Query 046511
Match_columns 282
No_of_seqs 245 out of 1674
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:42:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046511.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046511hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iyz_A Aquaporin-4; water tran 100.0 1.3E-47 4.5E-52 357.3 18.9 200 71-270 50-274 (340)
2 2w2e_A AQY1, aquaporin, aquapo 100.0 1.6E-46 5.5E-51 343.8 19.2 207 65-272 37-271 (279)
3 3gd8_A Aquaporin-4; proton exc 100.0 8.2E-47 2.8E-51 335.8 16.5 197 71-267 2-223 (223)
4 3d9s_A Aquaporin-5, AQP-5; aqu 100.0 3.8E-46 1.3E-50 339.3 18.7 201 69-270 8-231 (266)
5 2o9g_A Aquaporin Z; integral m 100.0 4.1E-46 1.4E-50 333.6 17.4 197 71-268 3-233 (234)
6 2zz9_A Aquaporin-4; water tran 100.0 6.8E-46 2.3E-50 342.3 17.9 202 69-270 9-235 (301)
7 1j4n_A Aquaporin 1; membrane p 100.0 9.1E-46 3.1E-50 337.8 17.0 201 69-270 7-238 (271)
8 2b6o_A Aquaporin-0, lens fiber 100.0 1.7E-45 5.8E-50 334.7 18.3 202 68-270 5-228 (263)
9 3llq_A Aquaporin Z 2; aquapori 100.0 1.1E-45 3.6E-50 334.2 16.9 196 69-265 26-253 (256)
10 1ldf_A Glycerol uptake facilit 100.0 2.1E-45 7.2E-50 337.0 16.9 200 68-268 3-258 (281)
11 3cn5_A Aquaporin; membrane pro 100.0 8.1E-46 2.8E-50 342.4 13.9 200 68-268 56-290 (304)
12 2f2b_A Aquaporin AQPM; protein 100.0 4.7E-44 1.6E-48 322.4 16.0 196 71-266 3-245 (246)
13 3c02_A Aquaglyceroporin; membr 100.0 1.4E-44 4.7E-49 328.0 10.4 199 70-269 7-246 (258)
14 2b6o_A Aquaporin-0, lens fiber 99.5 2.4E-14 8.1E-19 129.8 7.9 101 169-269 8-112 (263)
15 3llq_A Aquaporin Z 2; aquapori 99.3 9E-13 3.1E-17 118.8 6.9 100 167-266 26-132 (256)
16 3d9s_A Aquaporin-5, AQP-5; aqu 99.3 7.4E-13 2.5E-17 120.1 5.9 99 169-267 10-112 (266)
17 2zz9_A Aquaporin-4; water tran 99.3 2.2E-12 7.5E-17 118.8 8.7 100 169-268 11-118 (301)
18 2o9g_A Aquaporin Z; integral m 99.3 2E-12 7E-17 115.1 6.4 98 170-267 4-108 (234)
19 1j4n_A Aquaporin 1; membrane p 99.3 1.9E-12 6.6E-17 117.7 5.7 99 169-267 9-120 (271)
20 2f2b_A Aquaporin AQPM; protein 99.3 4E-12 1.4E-16 114.0 6.8 99 169-267 3-124 (246)
21 3c02_A Aquaglyceroporin; membr 99.3 1.9E-12 6.7E-17 116.8 4.6 100 169-268 8-113 (258)
22 3iyz_A Aquaporin-4; water tran 99.3 2.2E-12 7.7E-17 120.1 5.1 100 169-268 50-157 (340)
23 2w2e_A AQY1, aquaporin, aquapo 99.3 5.4E-12 1.9E-16 115.1 7.0 100 169-268 43-155 (279)
24 3gd8_A Aquaporin-4; proton exc 99.2 4.1E-12 1.4E-16 112.4 5.3 98 170-267 3-108 (223)
25 3cn5_A Aquaporin; membrane pro 99.2 3.9E-12 1.3E-16 117.3 5.1 99 169-267 59-166 (304)
26 1ldf_A Glycerol uptake facilit 99.2 5.9E-12 2E-16 115.0 6.0 99 169-267 6-110 (281)
27 3kcu_A Probable formate transp 73.9 48 0.0017 29.5 13.2 71 121-191 98-182 (285)
28 3tds_E Formate/nitrite transpo 50.4 93 0.0032 27.4 9.5 71 121-191 95-177 (268)
29 3kly_A Putative formate transp 43.7 1.5E+02 0.0053 26.1 9.9 69 123-191 99-181 (280)
30 4fc4_A Nitrite transporter NIR 40.6 1.3E+02 0.0043 26.4 8.8 71 121-191 89-171 (261)
No 1
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=100.00 E-value=1.3e-47 Score=357.28 Aligned_cols=200 Identities=32% Similarity=0.505 Sum_probs=168.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhccc-CC---CCch----hhh------------hhhhccchHHHHHHHHhcCCCc
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQK-YS---GAET----LIG------------NAASHLNPSLTIAFAALRHFPW 130 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~~-~~---~~~~----~~g------------~s~aH~NPAVTla~~l~g~~~~ 130 (282)
+++|++++||+|||+|+|+++++.+.... .. .... .+| +|+||+|||||+++++.|+++|
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~ 129 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 129 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCH
Confidence 68999999999999999999998764321 11 1111 122 2456999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccCCC--cc--ccccchhHHHHHHHHHHHHHHHhhhheecccCc-cCchhhHH
Q 046511 131 VQVPAYIMAQVSASICASFALKAVFHPFMSGG--VT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRA-VGELAGIA 205 (282)
Q Consensus 131 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~--~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~~~~l~ 205 (282)
.+++.||+||++||++|++++|.++++...+. .+ .++.+..++|+.|+++||+|+++|+++..+++. .....|++
T Consensus 130 ~~~~~YiiAQ~lGA~~GA~lv~~~~~~~~~~~lg~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Ila~~d~~~~~~~~~~pl~ 209 (340)
T 3iyz_A 130 AKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVALA 209 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchhhcCceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHhhcCccCCcccchhhH
Confidence 99999999999999999999999987654322 22 246789999999999999999999998433332 24578999
Q ss_pred HHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 206 VGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 206 iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
||++|.+.++..+++||++|||||||||+++.++|.++||||+||++|+++|+++|++++.|+.+
T Consensus 210 IGl~v~i~~~~g~~~TG~amNPARdlGPal~~~~w~~~WVywvgPiiGailaallY~~l~~p~~~ 274 (340)
T 3iyz_A 210 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 274 (340)
T ss_pred HHHHHHHHHHhccCCccccccHHHHHHHHHHccCCCcEeehhHHHHHHHHHHHHHHHHHhCCChh
Confidence 99999988888889999999999999999999999999999999999999999999999987664
No 2
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=100.00 E-value=1.6e-46 Score=343.75 Aligned_cols=207 Identities=25% Similarity=0.324 Sum_probs=172.9
Q ss_pred CCCCChhHHHHHHHHHHHHHHHHHHHhhhhhh-ccc-----CCCC---ch----hhh------------hhhhccchHHH
Q 046511 65 IPVPNVSLTRKVGAEFVGTFILIFAATAGPIV-NQK-----YSGA---ET----LIG------------NAASHLNPSLT 119 (282)
Q Consensus 65 ~~~~~~~l~r~~~aEflGT~ilvf~g~~s~~~-~~~-----~~~~---~~----~~g------------~s~aH~NPAVT 119 (282)
.+++-++++|++++||+||++|+|+++++... +.. ..+. .. .+| +|++|+|||||
T Consensus 37 ~~~~~~~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVT 116 (279)
T 2w2e_A 37 GSDSVRNHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVT 116 (279)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHH
Confidence 34445678999999999999999999986422 211 1111 11 122 34569999999
Q ss_pred HHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCCCcccc--ccchhHHHHHHHHHHHHHHHhhhheecccCc
Q 046511 120 IAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSGGVTVP--SVNTGQAFALEFLITFNLLFVVTAVATDTRA 197 (282)
Q Consensus 120 la~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~t~p--~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~ 197 (282)
+++++.|+++|++++.||++|++||++|++++|.++++... ..+.| +.+..++++.|+++||+|++++++++.+++.
T Consensus 117 la~~~~g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~-~~t~~~~~~s~~~~~~~E~i~Tf~Lv~~Il~~~~~~~~ 195 (279)
T 2w2e_A 117 LALVLARAIPPFRGILMAFTQIVAGMAAAGAASAMTPGEIA-FANALGGGASRTRGLFLEAFGTAILCLTVLMLAVEKHR 195 (279)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCC-CSCCCCTTCCHHHHHHHHHHHHHHHHHHHHHHTTSCST
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccccce-eeccCCccccHHHHHHHHHHHHHHHHHHHHHHccCCCC
Confidence 99999999999999999999999999999999999976542 23444 5789999999999999999999998666655
Q ss_pred cCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCC-CceeeeeehhhHHHHHHHHHHHHhhcCCCCCC
Q 046511 198 VGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNY-EKLWIFLLAPTLGALAGATTYTVVKLRDNETD 272 (282)
Q Consensus 198 ~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~-~~~wvY~v~P~lGailaa~ly~~l~~~~~~~~ 272 (282)
...+.|+.||++|.+++++.+++||++|||||||||+++.+.| .++||||++|++|+++|+++|++++..++++.
T Consensus 196 ~~~~~pl~IGl~v~~~~l~~g~~TG~s~NPAR~~GPal~~~~~~~~~WVy~vgPiiGa~la~~ly~~l~~~~~~~~ 271 (279)
T 2w2e_A 196 ATWFAPFVIGIALLIAHLICIYYTGAGLNPARSFGPAVAARSFPNYHWIYWLGPILGAFLAYSIWQMWKWLNYQTT 271 (279)
T ss_dssp TGGGHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHHTCCCTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCS
T ss_pred CcCcHHHHHHHHHHHHHHhcccccccccChHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHHHHHHccCCCcC
Confidence 5678999999999999999999999999999999999998765 68999999999999999999999987776644
No 3
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=100.00 E-value=8.2e-47 Score=335.84 Aligned_cols=197 Identities=30% Similarity=0.483 Sum_probs=165.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhccc-C--C-CCch----hhh------------hhhhccchHHHHHHHHhcCCCc
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQK-Y--S-GAET----LIG------------NAASHLNPSLTIAFAALRHFPW 130 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~~-~--~-~~~~----~~g------------~s~aH~NPAVTla~~l~g~~~~ 130 (282)
++||++++||+||++|+++++++.+...+ . . .... .+| +|++|+|||||+++++.|+++|
T Consensus 2 ~~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 81 (223)
T 3gd8_A 2 AFWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 81 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCH
Confidence 68999999999999999999997653211 1 1 1111 122 3456999999999999999999
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHhhccccCC--Ccc--ccccchhHHHHHHHHHHHHHHHhhhheecccCc-cCchhhHH
Q 046511 131 VQVPAYIMAQVSASICASFALKAVFHPFMSG--GVT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRA-VGELAGIA 205 (282)
Q Consensus 131 ~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~--~~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~~~~l~ 205 (282)
++++.|+++|++||++|++++|.++++...+ +.+ .|+.+..++++.|+++||+|+++++++.++++. .....|+.
T Consensus 82 ~~~~~Yi~AQ~lGA~~ga~lv~~~~~~~~~~~lg~~~~~~~~s~~~~~~~E~i~Tf~Lv~~i~~~~~~~~~~~~~~~pl~ 161 (223)
T 3gd8_A 82 AKSVFYIAAQCLGAIIGAGILYLVTPPSVVGGLGVTMVHGNLTAGHGLLVELIITFQLVFTIFASCDSKRTDVTGSIALA 161 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTCTTCSCCCSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcccccccceeeccCCCccCHHHHHHHHHHHHHHHHHHHHHHhccccCCccCCccHH
Confidence 9999999999999999999999998764322 222 357899999999999999999999997433333 24678999
Q ss_pred HHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 206 VGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 206 iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
||+++.+.++..+++||++|||||||||+++.++|+++||||++|++|+++|+++|++++.|
T Consensus 162 iGl~v~~~~~~g~~~TG~a~NPAR~~GP~l~~~~w~~~Wvy~vgP~~Ga~la~~~y~~~~~p 223 (223)
T 3gd8_A 162 IGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGGLYEYVFCP 223 (223)
T ss_dssp HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTCCTTTTHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHhccCCccccccHHHHHHHHHHhcCCCcEEeehhHHHHHHHHHHHHHHHHcCC
Confidence 99999888888889999999999999999999999999999999999999999999998865
No 4
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=100.00 E-value=3.8e-46 Score=339.30 Aligned_cols=201 Identities=26% Similarity=0.414 Sum_probs=170.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCch----hhh------------hhhhccchHHHHHHHHhcCCCcch
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAET----LIG------------NAASHLNPSLTIAFAALRHFPWVQ 132 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~~----~~g------------~s~aH~NPAVTla~~l~g~~~~~~ 132 (282)
+.+++|++++||+||++|+|+++++.+...+...... .+| +|++|+|||||+++++.|+++|++
T Consensus 8 ~~~~~r~~laEfiGT~~lv~~g~g~~~~~~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 87 (266)
T 3d9s_A 8 SVAFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLR 87 (266)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSSSCHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcCCCHHH
Confidence 4578999999999999999999998753322222211 122 345699999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccccC--CCccc--cccchhHHHHHHHHHHHHHHHhhhheecccCc--cCchhhHHH
Q 046511 133 VPAYIMAQVSASICASFALKAVFHPFMS--GGVTV--PSVNTGQAFALEFLITFNLLFVVTAVATDTRA--VGELAGIAV 206 (282)
Q Consensus 133 ~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~--~~~t~--p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~--~~~~~~l~i 206 (282)
++.||++|++||++|++++|.++++... .+.+. ++.+..++++.|+++||+|+++++++ .|+++ ...+.|+.|
T Consensus 88 ~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~g~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~-~d~~~~~~~~~~pl~I 166 (266)
T 3d9s_A 88 AFFYVAAQLVGAIAGAGILYGVAPLNARGNLAVNALNNNTTQGQAMVVELILTFQLALCIFAS-TDSRRTSPVGSPALSI 166 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTCCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCTTCCSCCCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccccccCceeeccCCccccHHHHHHHHHHHHHHHHHHHHHH-hcccCCCccchHHHHH
Confidence 9999999999999999999999875322 22333 36789999999999999999999997 56543 246789999
Q ss_pred HHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCc-eeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 207 GATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEK-LWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 207 Gl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~-~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
|+++.+.++..+++||++|||||||||+++.++|++ +||||++|++|+++|+++|++++.++.+
T Consensus 167 Gl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~ 231 (266)
T 3d9s_A 167 GLSVTLGHLVGIYFTGCSMNPARSFGPAVVMNRFSPAHWVFWVGPIVGAVLAAILYFYLLFPNSL 231 (266)
T ss_dssp HHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHTCCCTTHHHHHHHHHHHHHHHHHHHHHTTSCCSC
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHcCCcccCEeeeehHHHHHHHHHHHHHHHHhCCCch
Confidence 999999999999999999999999999999999998 9999999999999999999999877554
No 5
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=100.00 E-value=4.1e-46 Score=333.56 Aligned_cols=197 Identities=29% Similarity=0.486 Sum_probs=167.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--C-Cch----hhh------------hhhhccchHHHHHHHHhcCCCcc
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQKYS--G-AET----LIG------------NAASHLNPSLTIAFAALRHFPWV 131 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~--~-~~~----~~g------------~s~aH~NPAVTla~~l~g~~~~~ 131 (282)
+++|++++||+||++|+|+++++.+.+.... + ... .+| +|++|+|||||+++++.|+++|+
T Consensus 3 ~l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (234)
T 2o9g_A 3 HMFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAK 82 (234)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHH
Confidence 3789999999999999999999875543221 1 111 122 34569999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhcccc--C----------CCcccc-ccchhHHHHHHHHHHHHHHHhhhheecccCcc
Q 046511 132 QVPAYIMAQVSASICASFALKAVFHPFM--S----------GGVTVP-SVNTGQAFALEFLITFNLLFVVTAVATDTRAV 198 (282)
Q Consensus 132 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~--~----------~~~t~p-~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~ 198 (282)
+++.|+++|++||++|++++|.++++.. + .+.|.| +.+..++++.|+++||+|+++++++ .|+|..
T Consensus 83 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~~~~ 161 (234)
T 2o9g_A 83 EVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGA-TDKFAP 161 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-TSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccccccceeeecCCCccchHHHHHHHHHHHHHHHHHHHHh-cCCCCc
Confidence 9999999999999999999999987431 1 123556 5789999999999999999999997 576666
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCC--CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 199 GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNY--EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 199 ~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~--~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
..+.|+.||++|.+.+++.+++||++|||||||||+++.++| +++||||++|++|+++|+++|++++.++
T Consensus 162 ~~~~pl~IGl~v~~~~~~~g~~TG~s~NPAR~lGPal~~g~~~~~~~Wv~~vgP~~Ga~la~~~y~~~~~~~ 233 (234)
T 2o9g_A 162 AGFAPIAIGLACTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKR 233 (234)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCSHHHHSHHHHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred cchHHHHHHHHHHHHHHHccCCCccccChHHHHHHHHHhCCCCCceeeeeehHHhHHHHHHHHHHHHHcCCC
Confidence 678999999999999999999999999999999999998764 5999999999999999999999997653
No 6
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=100.00 E-value=6.8e-46 Score=342.31 Aligned_cols=202 Identities=31% Similarity=0.502 Sum_probs=167.5
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhcccC----CCCch----hhh------------hhhhccchHHHHHHHHhcCC
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQKY----SGAET----LIG------------NAASHLNPSLTIAFAALRHF 128 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~----~~~~~----~~g------------~s~aH~NPAVTla~~l~g~~ 128 (282)
+.+++|++++||+|||+|+|+++++.+..... ..... .+| +|++|+|||||+++++.|++
T Consensus 9 ~~~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g~~ 88 (301)
T 2zz9_A 9 TQAFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKI 88 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTSSS
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHhcCC
Confidence 45799999999999999999999976543211 11111 122 45669999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHHhhccccCCC--ccc--cccchhHHHHHHHHHHHHHHHhhhheecccCc-cCchhh
Q 046511 129 PWVQVPAYIMAQVSASICASFALKAVFHPFMSGG--VTV--PSVNTGQAFALEFLITFNLLFVVTAVATDTRA-VGELAG 203 (282)
Q Consensus 129 ~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~~--~t~--p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~~~~ 203 (282)
+|++++.||+||++||++|++++|.++++...++ .+. ++.+..++|+.|+++||+|+++++++.++++. ...+.|
T Consensus 89 ~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~Tf~Lv~~Il~~~d~~~~~~~~~~p 168 (301)
T 2zz9_A 89 SIAKSVFYITAQCLGAIIGAGILYLVTPPSVVGGLGVTTVHGNLTAGHGLLVELIITFQLVFTIFASCDDKRTDVTGSVA 168 (301)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHTTSCSCGGGTSSCCCCCSSCCHHHHHHHHHHHHHHHHHHHHHHSCSSSSCCSSCHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCceeeecCCcccchHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHh
Confidence 9999999999999999999999999998754322 222 36789999999999999999999997433333 246789
Q ss_pred HHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 204 IAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 204 l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
++||++|.+.++..+++||++|||||||||+++.++|.++||||++|++|+++|+++|++++.++.+
T Consensus 169 l~IGl~v~i~~~~g~~~TG~a~NPAR~~GPal~~~~w~~~WVy~vgPiiGailaa~ly~~l~~~~~~ 235 (301)
T 2zz9_A 169 LAIGFSVAIGHLFAINYTGASMNPARSFGPAVIMGNWENHWIYWVGPIIGAVLAGALYEYVFCPDVE 235 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCTTTTHHHHHHHHHHHHHHHHHHTTTC----
T ss_pred HHHHHHHHHHHHHhcCCcccccCcHHHHHHHHHhCCCcceeeeeeHHHHHHHHHHHHHHHHhCCchh
Confidence 9999999988888889999999999999999999999999999999999999999999999876543
No 7
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=100.00 E-value=9.1e-46 Score=337.77 Aligned_cols=201 Identities=27% Similarity=0.460 Sum_probs=168.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhcc------cCCC---Cch----hh------------hhhhhccchHHHHHHH
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQ------KYSG---AET----LI------------GNAASHLNPSLTIAFA 123 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~------~~~~---~~~----~~------------g~s~aH~NPAVTla~~ 123 (282)
+.+++|++++||+||++|+|+++++.+... ...+ ... .+ .+|++|+|||||++++
T Consensus 7 ~~~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~ 86 (271)
T 1j4n_A 7 KKLFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLL 86 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHH
Confidence 457899999999999999999998765321 1111 111 12 2345699999999999
Q ss_pred HhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccccCC----CccccccchhHHHHHHHHHHHHHHHhhhheecccCc--
Q 046511 124 ALRHFPWVQVPAYIMAQVSASICASFALKAVFHPFMSG----GVTVPSVNTGQAFALEFLITFNLLFVVTAVATDTRA-- 197 (282)
Q Consensus 124 l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~----~~t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-- 197 (282)
+.|+++|++++.||++|++||++|++++|.++++.... ..+.|+++..++++.|+++||+|+++++++ .|+++
T Consensus 87 ~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~E~i~T~~Lv~~i~~~-~d~~~~~ 165 (271)
T 1j4n_A 87 LSCQISVLRAIMYIIAQCVGAIVATAILSGITSSLPDNSLGLNALAPGVNSGQGLGIEIIGTLQLVLCVLAT-TDRRRRD 165 (271)
T ss_dssp HTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTCCTTCCCCCTTCCTTGGGHHHHHHHHHHHHHHHHH-TCSSCCC
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccccccCCCccchHHHHHHHHHHHHHHHHHHHhh-ccccCCC
Confidence 99999999999999999999999999999998653221 123467888999999999999999999987 55543
Q ss_pred cCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 198 VGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 198 ~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
...+.|+.||++|.+.++..+++||++|||||||||+++.++|+++||||++|++|+++|+++|++++.++.+
T Consensus 166 ~~~~~pl~IGl~v~~~~~~~~~~TG~a~NPAR~~Gpal~~~~~~~~wv~~vgP~~Ga~la~~~y~~~~~~~~~ 238 (271)
T 1j4n_A 166 LGGSGPLAIGFSVALGHLLAIDYTGCGINPARSFGSSVITHNFQDHWIFWVGPFIGAALAVLIYDFILAPRSS 238 (271)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHTTCCTTTTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred ccccHHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHhCCCcceeHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 2468899999999988888889999999999999999999999999999999999999999999999876543
No 8
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=100.00 E-value=1.7e-45 Score=334.65 Aligned_cols=202 Identities=25% Similarity=0.419 Sum_probs=171.2
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCCCCc----hhhh------------hhhhccchHHHHHHHHhcCCCcc
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVNQKYSGAE----TLIG------------NAASHLNPSLTIAFAALRHFPWV 131 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~~~~----~~~g------------~s~aH~NPAVTla~~l~g~~~~~ 131 (282)
++.+++|++++||+||++|+++++++.+......... ..+| ++++|+|||||+++++.|+++|.
T Consensus 5 ~~~~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~~~~~ 84 (263)
T 2b6o_A 5 RSASFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLL 84 (263)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTCSCHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcCCCHH
Confidence 4567899999999999999999998775322211111 1122 34569999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccCC--Cc--cccccchhHHHHHHHHHHHHHHHhhhheecccCc--cCchhhHH
Q 046511 132 QVPAYIMAQVSASICASFALKAVFHPFMSG--GV--TVPSVNTGQAFALEFLITFNLLFVVTAVATDTRA--VGELAGIA 205 (282)
Q Consensus 132 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~--~~--t~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~--~~~~~~l~ 205 (282)
+++.|+++|++||++|+++++.++++.... +. +.|+++..++++.|+++||+|+++++++ .|+++ ...+.|+.
T Consensus 85 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~E~i~Tf~Lv~~il~~-~d~~~~~~~~~~pl~ 163 (263)
T 2b6o_A 85 RAICYVVAQLLGAVAGAAVLYSVTPPAVRGNLALNTLHPGVSVGQATIVEIFLTLQFVLCIFAT-YDERRNGRLGSVALA 163 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCTTTCSSCSCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHH-SCTTSCSSCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHH-hcccCCCCcccHHHH
Confidence 999999999999999999999999864322 22 2357889999999999999999999997 55443 35688999
Q ss_pred HHHHHHHHHHHhcCCCcCccChhhhHHHHHhccCCCceeeeeehhhHHHHHHHHHHHHhhcCCCC
Q 046511 206 VGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGNYEKLWIFLLAPTLGALAGATTYTVVKLRDNE 270 (282)
Q Consensus 206 iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~~~ 270 (282)
||++|.+++++.+++||++|||||||||+++.++|+++||||++|++|+++|+++|++++.++.+
T Consensus 164 IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~~~Wvy~vgP~~Ga~la~~~y~~l~~~~~~ 228 (263)
T 2b6o_A 164 VGFSLTLGHLFGMYYTGAGMNPARSFAPAILTRNFTNHWVYWVGPVIGAGLGSLLYDFLLFPRLK 228 (263)
T ss_dssp HHHHHHHHHHHHTTTSTTCCCHHHHHHHHHHHTCCTTCTHHHHHHHHHHHHHHHHHHTTTSCCSS
T ss_pred HHHHHHHHHHhccCCCcccccHHHHHHHHHHcCCccceeHHHHHHHHHHHHHHHHHHHHhCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999876543
No 9
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=100.00 E-value=1.1e-45 Score=334.20 Aligned_cols=196 Identities=31% Similarity=0.518 Sum_probs=164.6
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHhhhhhhcccCC--CC-ch----hhh------------hhhhccchHHHHHHHHhcCCC
Q 046511 69 NVSLTRKVGAEFVGTFILIFAATAGPIVNQKYS--GA-ET----LIG------------NAASHLNPSLTIAFAALRHFP 129 (282)
Q Consensus 69 ~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~~--~~-~~----~~g------------~s~aH~NPAVTla~~l~g~~~ 129 (282)
.++++|++++||+||++|+++++++.+.+.... +. .. .+| +|++|+|||||+++++.|+++
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 105 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFP 105 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCC
Confidence 457899999999999999999999865443222 11 11 122 345699999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccc--cC--------CCcccc-ccchhHHHHHHHHHHHHHHHhhhheecccCcc
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFHPF--MS--------GGVTVP-SVNTGQAFALEFLITFNLLFVVTAVATDTRAV 198 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~--~~--------~~~t~p-~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~~ 198 (282)
|++++.||++|++||++|++++|.++++. .+ .+++.| ..+..++++.|+++||+|+++++++ .|+|..
T Consensus 106 ~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~~~~~~~~~~~~~~~~t~p~~~s~~~~f~~E~i~Tf~Lv~~il~~-~d~~~~ 184 (256)
T 3llq_A 106 ASSLVPYVIAQVAGAIVAAAALYVIATGKAGIDLGGFASNGYGEHSPGGYSLVSALLIEIILTAFFLIVILGS-THGRVP 184 (256)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHTTBTTCCCTTTTCCCCGGGSTTCCCHHHHHHHHHHHHHHHHHHHHHH-HSTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccccccccccCCcccCHHHHHHHHHHHHHHHHHHHHHh-cCCCCC
Confidence 99999999999999999999999988531 11 123556 5789999999999999999999986 677766
Q ss_pred CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhccC--CCceeeeeehhhHHHHHHHHHHHHhh
Q 046511 199 GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAGN--YEKLWIFLLAPTLGALAGATTYTVVK 265 (282)
Q Consensus 199 ~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~~--~~~~wvY~v~P~lGailaa~ly~~l~ 265 (282)
..+.|+.||++|.++.++.+++||++|||||||||+++.++ |+++||||++|++|+++|+++|+++.
T Consensus 185 ~~~~pl~IGl~v~~i~~~~g~~TG~a~NPAR~lGPal~~g~~~~~~~WVy~vgPi~Ga~la~~~y~~l~ 253 (256)
T 3llq_A 185 AGFAPIAIGLALTLIHLISIPVTNTSVNPARSTGQALFVGGWALQQLWLFWLAPIVGGAAGAVIWKLFG 253 (256)
T ss_dssp TTCHHHHHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHCHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHhccccccccChHHHHHHHHHcCCCcccceeeeeeHHHHHHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999865 56899999999999999999999985
No 10
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=100.00 E-value=2.1e-45 Score=337.05 Aligned_cols=200 Identities=31% Similarity=0.436 Sum_probs=162.7
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhcc--cC-CCCc---hhh------------hhhhhccchHHHHHHHHhcCCC
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVNQ--KY-SGAE---TLI------------GNAASHLNPSLTIAFAALRHFP 129 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~--~~-~~~~---~~~------------g~s~aH~NPAVTla~~l~g~~~ 129 (282)
++++++|++++||+||++|+|+++++..... +. .+.. ..+ .+|++|+|||||+++++.|+++
T Consensus 3 ~~~~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 82 (281)
T 1ldf_A 3 QTSTLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFD 82 (281)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCC
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCC
Confidence 3457899999999999999999998654321 11 1111 111 2355699999999999999999
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHhhccccC--------------------CCcccc--ccchhHHHHHHHHHHHHHHHh
Q 046511 130 WVQVPAYIMAQVSASICASFALKAVFHPFMS--------------------GGVTVP--SVNTGQAFALEFLITFNLLFV 187 (282)
Q Consensus 130 ~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~--------------------~~~t~p--~~s~~~~~~~E~i~Tf~Lv~~ 187 (282)
|++++.||++|++||++|++++|.++++... ..+|.| +++..++|+.|+++||+|+++
T Consensus 83 ~~~~~~Yi~AQ~lGA~~ga~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~f~t~p~~~~s~~~~~~~E~i~Tf~Lv~~ 162 (281)
T 1ldf_A 83 KRKVIPFIVSQVAGAFCAAALVYGLYYNLFFDFEQTHHIVRGSVESVDLAGTFSTYPNPHINFVQAFAVEMVITAILMGL 162 (281)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTSGGGHHHHTTTSCCCCTTCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccceeeccCCccccHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999865310 123555 478999999999999999999
Q ss_pred hhheecccCcc---CchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-------CC------Cceeeeeehhh
Q 046511 188 VTAVATDTRAV---GELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-------NY------EKLWIFLLAPT 251 (282)
Q Consensus 188 v~~~~~d~~~~---~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-------~~------~~~wvY~v~P~ 251 (282)
++++ .|+++. +.+.|+.||++|.+++++.+++||++|||||||||+++.. .| .++||||++|+
T Consensus 163 il~~-~d~~~~~~~~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~g~g~~~~~~~~~~~~~WVy~vgPi 241 (281)
T 1ldf_A 163 ILAL-TDDGNGVPRGPLAPLLIGLLIAVIGASMGPLTGTAMNPARDFGPKVFAWLAGWGNVAFTGGRDIPYFLVPLFGPI 241 (281)
T ss_dssp HHHH-HCTTSSSCCGGGHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTTTHHHHTTCSSCTTHHHHHHHH
T ss_pred HHHH-hccCCCCcccchHHHHHHHHHHHHHHhcccccccccCcHhhHHHHHHHHhcccccccccccCCCceeeHHhHHHH
Confidence 9997 454432 4689999999999999999999999999999999999851 12 27999999999
Q ss_pred HHHHHHHHHHHHhhcCC
Q 046511 252 LGALAGATTYTVVKLRD 268 (282)
Q Consensus 252 lGailaa~ly~~l~~~~ 268 (282)
+|+++|+++|++++.++
T Consensus 242 ~Ga~la~~~y~~l~~~~ 258 (281)
T 1ldf_A 242 VGAIVGAFAYRKLIGRH 258 (281)
T ss_dssp HHHHHHHHHHHHHTGGG
T ss_pred HHHHHHHHHHHHHhCcc
Confidence 99999999999997654
No 11
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=100.00 E-value=8.1e-46 Score=342.41 Aligned_cols=200 Identities=28% Similarity=0.430 Sum_probs=167.1
Q ss_pred CChhHHHHHHHHHHHHHHHHHHHhhhhhhcccC----CCC-ch----hh------------hhhhhccchHHHHHHHHhc
Q 046511 68 PNVSLTRKVGAEFVGTFILIFAATAGPIVNQKY----SGA-ET----LI------------GNAASHLNPSLTIAFAALR 126 (282)
Q Consensus 68 ~~~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~----~~~-~~----~~------------g~s~aH~NPAVTla~~l~g 126 (282)
++.+++|++++||+||++|+|+++++.+..... .+. .. .+ ++|++|+|||||+++++.|
T Consensus 56 ~~~~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g 135 (304)
T 3cn5_A 56 KLWSFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLAR 135 (304)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTT
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhC
Confidence 456889999999999999999999876543211 111 11 12 2345699999999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHhhcccc---CCCccc--cccchhHHHHHHHHHHHHHHHhhhheecccCc-c-C
Q 046511 127 HFPWVQVPAYIMAQVSASICASFALKAVFHPFM---SGGVTV--PSVNTGQAFALEFLITFNLLFVVTAVATDTRA-V-G 199 (282)
Q Consensus 127 ~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~---~~~~t~--p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~-~ 199 (282)
+++|++++.||+||++||++|++++|.++++.+ ..+.+. ++.+..++|+.|+++||+|+++|+.+ +|+++ . +
T Consensus 136 ~~~~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~~~~~~~g~~~~~~~~s~~~~f~~E~i~TfiLv~~Il~~-~d~~~~~~~ 214 (304)
T 3cn5_A 136 KVELLRALVYMIAQCLGAICGVGLVKAFMKGPYNQFGGGANSVALGYNKGTALGAEIIGTFVLVYTVFSA-TDPKRSARD 214 (304)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHTTTTCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHT-EEEEEESTT
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcccccCCCccHHHHHHHHHHHHHHHHHHHhhe-ecCccCCCC
Confidence 999999999999999999999999999987632 222322 36789999999999999999999976 55332 2 2
Q ss_pred c----hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh---ccCCCceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 200 E----LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA---AGNYEKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 200 ~----~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~---~~~~~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
. +.|+.||++|++++++.+++||++|||||||||+++ .++|+++||||++|++|+++|+++|++++.++
T Consensus 215 ~~~~~lapl~IGl~V~~~~l~~g~~TG~amNPAR~~GPal~~~~~~~w~~~WvywvgPiiGa~laa~~y~~l~~~~ 290 (304)
T 3cn5_A 215 SHVPILAPLPIGFAVFMVHLATIPITGTGINPARSFGAAVIFNSNKVWDDQWIFWVGPFIGAAVAAAYHQYVLRAA 290 (304)
T ss_dssp SCCEEECHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHCCHHHHHHTTHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred cccccchHHHHHHHHHHHHHhccCCCccccChHHHHHHHHHHccCCCcCceEEEeehHHHHHHHHHHHHHHHhCCC
Confidence 2 789999999999999999999999999999999999 56799999999999999999999999998764
No 12
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=100.00 E-value=4.7e-44 Score=322.42 Aligned_cols=196 Identities=34% Similarity=0.491 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhhhhcc---c--------CCC-----C---c----hhhh------------hhhhccc
Q 046511 71 SLTRKVGAEFVGTFILIFAATAGPIVNQ---K--------YSG-----A---E----TLIG------------NAASHLN 115 (282)
Q Consensus 71 ~l~r~~~aEflGT~ilvf~g~~s~~~~~---~--------~~~-----~---~----~~~g------------~s~aH~N 115 (282)
+++|++++||+||++|+|+++++.+... + ..+ . . ..+| +|++|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 5789999999999999999998765322 1 001 0 0 0122 3456999
Q ss_pred hHHHHHHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhccc--c--CCCcccc--ccchhHHHHHHHHHHHHHHHhhh
Q 046511 116 PSLTIAFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHPF--M--SGGVTVP--SVNTGQAFALEFLITFNLLFVVT 189 (282)
Q Consensus 116 PAVTla~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~~--~--~~~~t~p--~~s~~~~~~~E~i~Tf~Lv~~v~ 189 (282)
||||+++++.|+++|++++.|+++|++||++|++++|.++++. . ..+.+.| +.+..++++.|+++||+|+++++
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~t~p~~~~~~~~~~~~E~i~Tf~Lv~~i~ 162 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGIGAATVGGLGATAPFPGISYWQAMLAEVVGTFLLMITIM 162 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCTHHHHTTGGGCCCCCTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhcceeeeccCccccchHHHHHHHHHHHHHHHheee
Confidence 9999999999999999999999999999999999999999872 1 1234555 67899999999999999999999
Q ss_pred heecccCccCchhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh--c----cCCCceeeeeehhhHHHHHHHHHHHH
Q 046511 190 AVATDTRAVGELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA--A----GNYEKLWIFLLAPTLGALAGATTYTV 263 (282)
Q Consensus 190 ~~~~d~~~~~~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~--~----~~~~~~wvY~v~P~lGailaa~ly~~ 263 (282)
.+++|++......|+.+|++|.+.+++.+++||+++||||||||+++ . .+|+++|+||++|++|+++|+++|++
T Consensus 163 ~~~~~~~~~~~~~pl~iGl~v~~~~~~~g~~TG~~iNPAr~lgp~l~~~~~g~~~~w~~~~vy~vap~~Ga~laa~~y~~ 242 (246)
T 2f2b_A 163 GIAVDERAPKGFAGIIIGLTVAGIITTLGNISGSSLNPARTFGPYLNDMIFAGTDLWNYYSIYVIGPIVGAVLAALTYQY 242 (246)
T ss_dssp HHTTSTTSCTTCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCGGGTTHHHHHHHHHHHHHHHHHHH
T ss_pred EEecCCCCCCceeeHHHHHHHHHHHhcccccCCCccCHHHHHHHHHHHHHcCCCCCcceEEEeeeHHHHHHHHHHHHHHH
Confidence 97666665567899999999999999999999999999999999993 2 36888889999999999999999999
Q ss_pred hhc
Q 046511 264 VKL 266 (282)
Q Consensus 264 l~~ 266 (282)
++.
T Consensus 243 l~~ 245 (246)
T 2f2b_A 243 LTS 245 (246)
T ss_dssp HTC
T ss_pred HcC
Confidence 864
No 13
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=100.00 E-value=1.4e-44 Score=327.96 Aligned_cols=199 Identities=26% Similarity=0.386 Sum_probs=160.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhhhhhcccC--CCCch----hh------------hhhhhccchHHHHHHHHhcCCCcc
Q 046511 70 VSLTRKVGAEFVGTFILIFAATAGPIVNQKY--SGAET----LI------------GNAASHLNPSLTIAFAALRHFPWV 131 (282)
Q Consensus 70 ~~l~r~~~aEflGT~ilvf~g~~s~~~~~~~--~~~~~----~~------------g~s~aH~NPAVTla~~l~g~~~~~ 131 (282)
++++|++++||+||++|+|+++++....... ..... .+ .+|++|+|||||+++++.|+++|+
T Consensus 7 ~~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~ 86 (258)
T 3c02_A 7 KSYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLK 86 (258)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHH
Confidence 3689999999999999999999865432211 12211 11 234569999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccccCC-------Ccc--ccccchhHHHHHHHHHHHHHHHhhhheecccCc---cC
Q 046511 132 QVPAYIMAQVSASICASFALKAVFHPFMSG-------GVT--VPSVNTGQAFALEFLITFNLLFVVTAVATDTRA---VG 199 (282)
Q Consensus 132 ~~~~Yi~aQ~lGa~~ga~l~~~~~~~~~~~-------~~t--~p~~s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~---~~ 199 (282)
+++.|+++|++||++|++++|.++++.... +.. ..+.+..++++.|+++||+|+++++++ .|+|+ ..
T Consensus 87 ~~~~Yi~AQ~lGa~~ga~l~~~~~~~~~~~~~~~~~~~~~~~~~t~p~~~~~~~E~i~Tf~Lv~~i~~~-~d~~~~~~~~ 165 (258)
T 3c02_A 87 KIPVYFFAQLLGAFVGTSTVYGLYHGFISNSKIPQFAWETSRNPSISLTGAFFNELILTGILLLVILVV-VDENICGKFH 165 (258)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTCSCTTCSSCCCCTTSCHHHHHHHHHHHHHHHHHHHHHH-HCHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcchhhhhccccccccccccCCCCchHHHHHHHHHHHHHHHHHHHHH-hCcccCCccc
Confidence 999999999999999999999998753211 000 013445669999999999999999997 55542 34
Q ss_pred chh-hHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc------CC----CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 200 ELA-GIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG------NY----EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 200 ~~~-~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~------~~----~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
.+. |+.||++|.+++++.+++||++|||||||||+++.. .| +++||||++|++|+++|+++|++++.++
T Consensus 166 ~~~~pl~IGl~v~~~~~~~g~~TG~a~NPAR~~GPal~~~~~~g~~~~~~~~~y~Wv~~vgP~~Ga~la~~~y~~~~~~~ 245 (258)
T 3c02_A 166 ILKLSSVVGLIILCIGITFGGNTGFALNPSRDLGSRFLSLIAYGKDTFTKDNFYFWVPLVAPCVGSVVFCQFYDKVICPL 245 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCTHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred ccHHHHHHHHHHHHHHHhccCccCCCcChHHHHHHHHHHhccccccccccCCceeehHHHHHHHHHHHHHHHHHHHhccc
Confidence 577 999999999999999999999999999999999862 24 5699999999999999999999997654
Q ss_pred C
Q 046511 269 N 269 (282)
Q Consensus 269 ~ 269 (282)
.
T Consensus 246 ~ 246 (258)
T 3c02_A 246 V 246 (258)
T ss_dssp H
T ss_pred C
Confidence 3
No 14
>2b6o_A Aquaporin-0, lens fiber major intrinsic protein; aquaporin-0 junctions, AQP0, lens MIP, lipid-protein interac membrane, lipid bilayer; HET: MC3; 1.90A {Ovis aries} SCOP: f.19.1.1 PDB: 1ymg_A* 2b6p_A 2c32_A 1sor_A 3m9i_A*
Probab=99.50 E-value=2.4e-14 Score=129.76 Aligned_cols=101 Identities=22% Similarity=0.226 Sum_probs=85.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecccCc-cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCcee
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATDTRA-VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEKLW 244 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~~w 244 (282)
+..+.++.|+++||+|+++.+......+. ... ..++.+|+++++.+++.+++||+|+|||++++.++..+ +|...|
T Consensus 8 ~~~~~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~l~i~l~~Gl~v~~~i~~~g~iSGahlNPAVTla~~~~g~~~~~~~~ 87 (263)
T 2b6o_A 8 SFWRAIFAEFFATLFYVFFGLGASLRWAPGPLHVLQVALAFGLALATLVQAVGHISGAHVNPAVTFAFLVGSQMSLLRAI 87 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCCSSSCHHHHHHHHHHHHHHHHHHHGGGTTCCCCSHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHHhhccCcCeeChHHHHHHHHhcCCCHHHHH
Confidence 56788999999999999998876433221 122 35788999999999999999999999999999999876 688999
Q ss_pred eeeehhhHHHHHHHHHHHHhhcCCC
Q 046511 245 IFLLAPTLGALAGATTYTVVKLRDN 269 (282)
Q Consensus 245 vY~v~P~lGailaa~ly~~l~~~~~ 269 (282)
+||++|++|+++|+.+++.++.++.
T Consensus 88 ~Yi~AQ~lGa~~ga~l~~~~~~~~~ 112 (263)
T 2b6o_A 88 CYVVAQLLGAVAGAAVLYSVTPPAV 112 (263)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHccccc
Confidence 9999999999999999999986543
No 15
>3llq_A Aquaporin Z 2; aquaporin tetramer, membrane protein, water channel, structu genomics, PSI-2, protein structure initiative; 2.01A {Agrobacterium tumefaciens str}
Probab=99.35 E-value=9e-13 Score=118.83 Aligned_cols=100 Identities=28% Similarity=0.321 Sum_probs=81.6
Q ss_pred ccchhHHHHHHHHHHHHHHHhhhheec-cc--C-ccCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-C
Q 046511 167 SVNTGQAFALEFLITFNLLFVVTAVAT-DT--R-AVGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-N 239 (282)
Q Consensus 167 ~~s~~~~~~~E~i~Tf~Lv~~v~~~~~-d~--~-~~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~ 239 (282)
..+..+.++.|+++||+|++..+.... .. + .... ...+.+|++|++.+++.+.+||+++|||.+++.++.+. +
T Consensus 26 ~~~l~r~~laEflGT~lLv~~G~G~~~~~~~~~~~~~~~l~iala~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~ 105 (256)
T 3llq_A 26 SYVMGRKLLAEFFGTFWLVFGGCGSAVFAAAFPELGIGFTGVALAFGLTVLTMAYAVGGISGGHFNPAVSVGLTVAGRFP 105 (256)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHheeeccccceEchHHHHHHHHhcCCC
Confidence 346788999999999999998665422 11 1 1112 34688999999999999999999999999999999976 7
Q ss_pred CCceeeeeehhhHHHHHHHHHHHHhhc
Q 046511 240 YEKLWIFLLAPTLGALAGATTYTVVKL 266 (282)
Q Consensus 240 ~~~~wvY~v~P~lGailaa~ly~~l~~ 266 (282)
|.....|+++|++|+++|+++.+.++.
T Consensus 106 ~~~~~~YiiAQ~lGA~~ga~lv~~~~~ 132 (256)
T 3llq_A 106 ASSLVPYVIAQVAGAIVAAAALYVIAT 132 (256)
T ss_dssp GGGHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999888874
No 16
>3d9s_A Aquaporin-5, AQP-5; aquaglyceroporin, membrane protein, water transport, X-RAY diffraction, lipid, phosphatidylserine, PSF, NPA, AR/R, water channel; HET: PS6; 2.00A {Homo sapiens}
Probab=99.34 E-value=7.4e-13 Score=120.11 Aligned_cols=99 Identities=26% Similarity=0.295 Sum_probs=83.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecccCc-cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCcee
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATDTRA-VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEKLW 244 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~~-~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~~w 244 (282)
+..+.++.|+++||+|++........... ... ...+.+|++|++.+++.+++||+|+|||++++.++... +|...+
T Consensus 10 ~~~r~~laEfiGT~~lv~~g~g~~~~~~~~~~~~l~ial~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~~~ 89 (266)
T 3d9s_A 10 AFLKAVFAEFLATLIFVFFGLGSALKWPSALPTILQIALAFGLAIGTLAQALGPVSGGHINPAITLALLVGNQISLLRAF 89 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHTSSSCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHcccCcceECHHHHHHHHHhcCCCHHHHH
Confidence 56788999999999999987765432211 112 35788999999999999999999999999999999986 688999
Q ss_pred eeeehhhHHHHHHHHHHHHhhcC
Q 046511 245 IFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 245 vY~v~P~lGailaa~ly~~l~~~ 267 (282)
.|+++|++|+++|+.+.+.++..
T Consensus 90 ~Yi~AQ~lGA~~ga~l~~~~~~~ 112 (266)
T 3d9s_A 90 FYVAAQLVGAIAGAGILYGVAPL 112 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHccc
Confidence 99999999999999999988743
No 17
>2zz9_A Aquaporin-4; water transport, water channel, two-dimensional crystal, electron diffraction, electron microscopy, membrane protein; HET: PEE; 2.80A {Rattus norvegicus} PDB: 2d57_A
Probab=99.33 E-value=2.2e-12 Score=118.78 Aligned_cols=100 Identities=21% Similarity=0.288 Sum_probs=83.8
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecccC-c----cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATDTR-A----VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d~~-~----~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.++.++.||++||+|++..+....... . ... ...+.+|++|++.+++.+++||+|+|||.+++.++... .|
T Consensus 11 ~~~r~~lAEflGT~lLv~~g~Gs~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~ 90 (301)
T 2zz9_A 11 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 90 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSCCTTCC-CCCCCCHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHHHHTSSSCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCcchHHHHHHHHHHHHHhhheeccCCcceeChHHHHHHHHhcCCCH
Confidence 5788999999999999998776432211 1 111 35788999999999999999999999999999999976 69
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
.....|+++|++|+++|+++.+.++.++
T Consensus 91 ~~~~~YiiAQ~lGAi~Ga~lv~~~~~~~ 118 (301)
T 2zz9_A 91 AKSVFYITAQCLGAIIGAGILYLVTPPS 118 (301)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHTTSCSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999999999999887653
No 18
>2o9g_A Aquaporin Z; integral membrane protein, structural genomics, P protein structure initiative, center for structures of MEMB proteins, CSMP; HET: BOG; 1.90A {Escherichia coli} PDB: 2o9f_A* 2o9d_A* 2o9e_A 1rc2_B* 2abm_A* 3nk5_A* 3nka_A* 3nkc_A*
Probab=99.30 E-value=2e-12 Score=115.15 Aligned_cols=98 Identities=22% Similarity=0.225 Sum_probs=81.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhheecccC-c---cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCc
Q 046511 170 TGQAFALEFLITFNLLFVVTAVATDTR-A---VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEK 242 (282)
Q Consensus 170 ~~~~~~~E~i~Tf~Lv~~v~~~~~d~~-~---~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~ 242 (282)
..+.++.|+++|++|++.......-.+ . ... ...+.+|+.|++.+++.+++||+|+|||.+++.++..+ +|..
T Consensus 4 l~r~~~aEf~GT~~lv~~g~g~~~~~~~~~~~~~~~l~ia~~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 83 (234)
T 2o9g_A 4 MFRKLAAESFGTFWLVFGGSGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKE 83 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcccCCCCCCcChHHHHHHHHHHHHHHHHHhhccCcceeCHHHHHHHHHhCCCCHHH
Confidence 467899999999999998655422111 1 111 25688999999999999999999999999999999976 6888
Q ss_pred eeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 243 LWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 243 ~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
...|+++|++|+++|+.+.+.++..
T Consensus 84 ~~~Yi~aQ~lGa~~ga~l~~~~~~~ 108 (234)
T 2o9g_A 84 VVGYVIAQVVGGIVAAALLYLIASG 108 (234)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999888764
No 19
>1j4n_A Aquaporin 1; membrane protein, channel protein, transmembrane helices; HET: BNG; 2.20A {Bos taurus} SCOP: f.19.1.1 PDB: 1h6i_A 1fqy_A 1ih5_A
Probab=99.29 E-value=1.9e-12 Score=117.67 Aligned_cols=99 Identities=20% Similarity=0.316 Sum_probs=81.6
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecc-------cCccC-----chhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATD-------TRAVG-----ELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA 236 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d-------~~~~~-----~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~ 236 (282)
+..+.++.||++|++|++........ ++..+ ....+++|+.|++.+++.+++||+|+|||.+++.++.
T Consensus 9 ~~~r~~~aEflGT~llv~~g~g~~~~~~~~~~~~~~~g~~~~~~~ial~~Gl~v~~~i~~~g~iSGaHlNPAVTla~~~~ 88 (271)
T 1j4n_A 9 LFWRAVVAEFLAMILFIFISIGSALGFHYPIKSNQTTGAVQDNVKVSLAFGLSIATLAQSVGHISGAHLNPAVTLGLLLS 88 (271)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCCCSSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccCcccchHHHHHHHHHHHHHHHHHHhcCCcceEcHHHHHHHHHc
Confidence 46788999999999999976553211 11111 1357889999999999999999999999999999999
Q ss_pred cc-CCCceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 237 AG-NYEKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 237 ~~-~~~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
+. +|.....|+++|++|+++|+.+.+.++..
T Consensus 89 g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 120 (271)
T 1j4n_A 89 CQISVLRAIMYIIAQCVGAIVATAILSGITSS 120 (271)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 76 68889999999999999999998888753
No 20
>2f2b_A Aquaporin AQPM; protein, integral membrane protein, channel, structural GENO PSI-2, protein structure initiative; 1.68A {Methanothermobacter marburgensis str} PDB: 2evu_A 3ne2_A*
Probab=99.27 E-value=4e-12 Score=113.97 Aligned_cols=99 Identities=24% Similarity=0.306 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecc----cC--------ccC-----c-----hhhHHHHHHHHHHHHHhcCCCcCccC
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATD----TR--------AVG-----E-----LAGIAVGATVMLNILIAGPSSGGSMN 226 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d----~~--------~~~-----~-----~~~l~iGl~V~~~~~~~g~~tG~~lN 226 (282)
+..+.++.|+++||+|++........ ++ +.+ . ...+.+|+.|++.+++.+++||+|+|
T Consensus 3 ~~~~~~~aEfiGT~~lv~~g~g~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaH~N 82 (246)
T 2f2b_A 3 SLTKRCIAEFIGTFILVFFGAGSAAVTLMIASGGTSPNPFNIGIGLLGGLGDWVAIGLAFGFAIAASIYALGNISGCHIN 82 (246)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSTTCCSTTTTTTHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCccccccccccccccccccchhHHHHHHHHHHHHHhheecccccceeC
Confidence 46788999999999999986543211 00 001 1 16788999999999999999999999
Q ss_pred hhhhHHHHHhcc-CCCceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 227 PVRTLGPAVAAG-NYEKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 227 PAr~lgpal~~~-~~~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
||.+++..+.++ +|.....|+++|++|+++|+.+.+.++.+
T Consensus 83 PAVTla~~~~g~~~~~~~~~Yi~AQ~lGa~~ga~l~~~~~~~ 124 (246)
T 2f2b_A 83 PAVTIGLWSVKKFPGREVVPYIIAQLLGAAFGSFIFLQCAGI 124 (246)
T ss_dssp HHHHHHHHHTTSSCGGGHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCc
Confidence 999999999976 79999999999999999999999988866
No 21
>3c02_A Aquaglyceroporin; membrane protein, glycerol, water, transport, structural GEN PSI-2, protein structure initiative; HET: BOG; 2.05A {Plasmodium falciparum}
Probab=99.27 E-value=1.9e-12 Score=116.84 Aligned_cols=100 Identities=25% Similarity=0.361 Sum_probs=82.2
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecc---cCccCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCc
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATD---TRAVGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEK 242 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d---~~~~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~ 242 (282)
+..+.++.|+++||+|++....+... .+.... ...+..|+.|++.+++.+++||+|+|||.+++.++..+ +|..
T Consensus 8 ~~~~~~~aEflGT~~lv~~G~g~~~~~~~~~~~~~~l~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 87 (258)
T 3c02_A 8 SYVREFIGEFLGTFVLMFLGEGATANFHTTGLSGDWYKLCLGWGLAVFFGILVSAKLSGAHLNLAVSIGLSSINKFDLKK 87 (258)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCccHHHHHHHHHHHHHHHHheecccCcCeeChHHHHHHHHhCCCcHHH
Confidence 56788999999999999975543211 111122 25678899999999999999999999999999999976 7999
Q ss_pred eeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 243 LWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 243 ~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
...|+++|++|+++|+.+.+.++.++
T Consensus 88 ~~~Yi~AQ~lGa~~ga~l~~~~~~~~ 113 (258)
T 3c02_A 88 IPVYFFAQLLGAFVGTSTVYGLYHGF 113 (258)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcchh
Confidence 99999999999999999988887643
No 22
>3iyz_A Aquaporin-4; water transport, water channel, two-dimensional C membrane protein, baculovirus expression system, glycoprote membrane; 10.00A {Rattus norvegicus}
Probab=99.27 E-value=2.2e-12 Score=120.14 Aligned_cols=100 Identities=21% Similarity=0.280 Sum_probs=82.0
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecc--cCc---cC--chhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CC
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATD--TRA---VG--ELAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NY 240 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d--~~~---~~--~~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~ 240 (282)
+.++.++.||++||+|++..++.... +.. .. ....+++|++|++.+++++.+||+++|||.+++.++... +|
T Consensus 50 ~l~r~~lAEflGT~lLV~~G~Gs~a~~~~~~~~~~~g~l~Iala~GlaV~~~v~~~g~ISGAHlNPAVTlal~l~G~~~~ 129 (340)
T 3iyz_A 50 AFWKAVTAEFLAMLIFVLLSVGSTINWGGSENPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISI 129 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHheeEeeccCcCeeChHHHHHHHHcCCCCH
Confidence 46889999999999999976654321 111 11 135788999999999999999999999999999999876 68
Q ss_pred CceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 241 EKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 241 ~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
.....|+++|++|+++|+++.+.++..+
T Consensus 130 ~~~~~YiiAQ~lGA~~GA~lv~~~~~~~ 157 (340)
T 3iyz_A 130 AKSVFYITAQCLGAIIGAGILYLVTPPS 157 (340)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcchh
Confidence 8899999999999999999988876543
No 23
>2w2e_A AQY1, aquaporin, aquaporin PIP2-7 7; yeast, gating, membrane protein; HET: BOG; 1.15A {Komagataella pastoris} PDB: 2w1p_A*
Probab=99.26 E-value=5.4e-12 Score=115.13 Aligned_cols=100 Identities=22% Similarity=0.291 Sum_probs=81.3
Q ss_pred chhHHHHHHHHHHHHHHHhhhhee---cccC----ccC---c--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHh
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVA---TDTR----AVG---E--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVA 236 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~---~d~~----~~~---~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~ 236 (282)
+..+.++.||++||+|++..+..+ .... ... . ..++.+|++|++.+++.+.+||+++|||.+++.++.
T Consensus 43 ~~~r~~laEfiGT~~Lv~~g~g~~~~~~~~~~~~~~~~~~~~~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~~~ 122 (279)
T 2w2e_A 43 NHFIAMSGEFVGTFLFLWSAFVIAQIANQAPETPDGGSNPAQLIMISFGFGFGVMVGVFITYRVSGGNLNPAVTLALVLA 122 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCGGGCCCHHHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCccHHHHHHHHHHHHHHHHHHHhhcCccccChHHHHHHHHc
Confidence 466788999999999998755431 1110 111 1 356889999999999999999999999999999999
Q ss_pred cc-CCCceeeeeehhhHHHHHHHHHHHHhhcCC
Q 046511 237 AG-NYEKLWIFLLAPTLGALAGATTYTVVKLRD 268 (282)
Q Consensus 237 ~~-~~~~~wvY~v~P~lGailaa~ly~~l~~~~ 268 (282)
+. +|.....|+++|++|+++|+++.+.++..+
T Consensus 123 g~~~~~~~~~YiiAQ~lGA~~ga~lv~~~~~~~ 155 (279)
T 2w2e_A 123 RAIPPFRGILMAFTQIVAGMAAAGAASAMTPGE 155 (279)
T ss_dssp TSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCSS
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 76 688899999999999999999988887543
No 24
>3gd8_A Aquaporin-4; proton exclusion, structural genomics protein structure initiative, center for structures of MEMB proteins, CSMP, glycoprotein; HET: BOG; 1.80A {Homo sapiens}
Probab=99.25 E-value=4.1e-12 Score=112.40 Aligned_cols=98 Identities=21% Similarity=0.296 Sum_probs=80.4
Q ss_pred hhHHHHHHHHHHHHHHHhhhheecc--cCc---cCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCC
Q 046511 170 TGQAFALEFLITFNLLFVVTAVATD--TRA---VGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYE 241 (282)
Q Consensus 170 ~~~~~~~E~i~Tf~Lv~~v~~~~~d--~~~---~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~ 241 (282)
.++.++.|+++||+|++.-...... ++. ... ...+.+|+.|++.+++.+++||+|+|||.+++.++..+ +|.
T Consensus 3 ~~r~~~aEfiGT~~lv~~g~g~~~~~~~~~~~~~~~~~~ia~~~Gl~v~~~v~~~g~iSGaHlNPAVTla~~~~g~~~~~ 82 (223)
T 3gd8_A 3 FWKAVTAEFLAMLIFVLLSLGSTINWGGTEKPLPVDMVLISLCFGLSIATMVQCFGHISGGHINPAVTVAMVCTRKISIA 82 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHTTSSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHHHHHheecccccceEcHHHHHHHHHcCCCCHH
Confidence 4688999999999999976654321 111 111 35688999999999999999999999999999999876 688
Q ss_pred ceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 242 KLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 242 ~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
....|+++|++|+++|+.+.+.++.+
T Consensus 83 ~~~~Yi~AQ~lGA~~ga~lv~~~~~~ 108 (223)
T 3gd8_A 83 KSVFYIAAQCLGAIIGAGILYLVTPP 108 (223)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 89999999999999999998877643
No 25
>3cn5_A Aquaporin; membrane protein, transmembrane, transport, transport protein; 2.05A {Spinacia oleracea} PDB: 3cn6_A 3cll_A 1z98_A 2b5f_A
Probab=99.24 E-value=3.9e-12 Score=117.28 Aligned_cols=99 Identities=21% Similarity=0.309 Sum_probs=81.9
Q ss_pred chhHHHHHHHHHHHHHHHhhhheecc---cC---ccCc--hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-C
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVATD---TR---AVGE--LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-N 239 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~d---~~---~~~~--~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~ 239 (282)
+..+.++.||++||+|++........ .. .... ...+++|++|++.+++.+.+||+++|||.+++.++... +
T Consensus 59 ~~~r~~lAEfiGT~lLv~~g~gsv~~~~~~~~~~~~~g~l~iala~Glav~~~v~~~g~iSGaHlNPAVTla~~l~g~~~ 138 (304)
T 3cn5_A 59 SFWRAAIAEFIATLLFLYITVATVIGHSKETVVCGSVGLLGIAWAFGGMIFVLVYCTAGISGGHINPAVTFGLFLARKVE 138 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSTTCSCHHHHHHHHHHHHHHHHHHHHTTTTCCCCSHHHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHeEeccccCCCCCCCceeehhhhhhhhheeeeEeeccCCCccCcHHHHHHHHhCCCC
Confidence 57789999999999999986543211 11 1111 35688899999999999999999999999999999976 6
Q ss_pred CCceeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 240 YEKLWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 240 ~~~~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
|.....|+++|++|+++|+++.+.++.+
T Consensus 139 ~~~~~~YiiAQ~lGAi~Ga~lv~~~~~~ 166 (304)
T 3cn5_A 139 LLRALVYMIAQCLGAICGVGLVKAFMKG 166 (304)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 8889999999999999999999888754
No 26
>1ldf_A Glycerol uptake facilitator protein; glycerol-conducting membrane channel protein, transport PROT; HET: BOG; 2.10A {Escherichia coli} SCOP: f.19.1.1 PDB: 1fx8_A* 1lda_A* 1ldi_A*
Probab=99.24 E-value=5.9e-12 Score=114.98 Aligned_cols=99 Identities=21% Similarity=0.247 Sum_probs=81.7
Q ss_pred chhHHHHHHHHHHHHHHHhhhheec----ccCccCc-hhhHHHHHHHHHHHHHhcCCCcCccChhhhHHHHHhcc-CCCc
Q 046511 169 NTGQAFALEFLITFNLLFVVTAVAT----DTRAVGE-LAGIAVGATVMLNILIAGPSSGGSMNPVRTLGPAVAAG-NYEK 242 (282)
Q Consensus 169 s~~~~~~~E~i~Tf~Lv~~v~~~~~----d~~~~~~-~~~l~iGl~V~~~~~~~g~~tG~~lNPAr~lgpal~~~-~~~~ 242 (282)
+..+.++.||++||+|++....+.. .+...+. ...+.+|+.|++.+++.+.+||+|+|||.+++.++... +|..
T Consensus 6 ~~~~~~laEflGT~~Lv~~G~g~~~~~~l~~~~~g~~~ia~~~Glav~~~i~~~g~iSGaHlNPAVTla~~~~g~~~~~~ 85 (281)
T 1ldf_A 6 TLKGQCIAEFLGTGLLIFFGVGCVAALKVAGASFGQWEISVIFGLGVAMAIYLTAGVSGAHLNPAVTIALWLFACFDKRK 85 (281)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCSHHHHHHHHHHSCCCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHHhheecccCcCeeChHHHHHHHHcCCCCHHH
Confidence 5678899999999999997554321 1111121 25788899999999999999999999999999999986 7999
Q ss_pred eeeeeehhhHHHHHHHHHHHHhhcC
Q 046511 243 LWIFLLAPTLGALAGATTYTVVKLR 267 (282)
Q Consensus 243 ~wvY~v~P~lGailaa~ly~~l~~~ 267 (282)
...|+++|++|+++|+.+.+.++.+
T Consensus 86 ~~~Yi~AQ~lGA~~ga~l~~~~~~~ 110 (281)
T 1ldf_A 86 VIPFIVSQVAGAFCAAALVYGLYYN 110 (281)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999998887754
No 27
>3kcu_A Probable formate transporter 1; TCDB ID 2.A.44.1.1, channel, cell inner membrane, cell membrane, membrane, transmembrane; HET: MA5; 2.24A {Escherichia coli O157} PDB: 3kcv_A 3q7k_A
Probab=73.93 E-value=48 Score=29.49 Aligned_cols=71 Identities=11% Similarity=0.127 Sum_probs=42.8
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhh---ccc-cCCCc----------cccccchhHHHHHHHHHHHHHHH
Q 046511 121 AFAALRHFPWVQVPAYIMAQVSASICASFALKAVF---HPF-MSGGV----------TVPSVNTGQAFALEFLITFNLLF 186 (282)
Q Consensus 121 a~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~---~~~-~~~~~----------t~p~~s~~~~~~~E~i~Tf~Lv~ 186 (282)
.-.+.||.+|.+.+--+.-=.+|=++|++++-.+. ... ...+. ..-+.+..+.|+-=+++.++..+
T Consensus 98 ~a~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVcl 177 (285)
T 3kcu_A 98 VAKASGRITWGQLAKNWLNVYFGNLVGALLFVLLMWLSGEYMTANGQWGLNVLQTADHKVHHTFIEAVCLGILANLMVCL 177 (285)
T ss_dssp HHHTTTCCCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 34568899998876666555555555555443321 111 11110 01145788888888889988888
Q ss_pred hhhhe
Q 046511 187 VVTAV 191 (282)
Q Consensus 187 ~v~~~ 191 (282)
.+...
T Consensus 178 aVw~~ 182 (285)
T 3kcu_A 178 AVWMS 182 (285)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87764
No 28
>3tds_E Formate/nitrite transporter; membrane protein; HET: PG4 BOG; 1.98A {Clostridium difficile} PDB: 3tdo_A* 3tdr_A* 3te0_A* 3tdx_A* 3te2_A* 3te1_A* 3tdp_A*
Probab=50.36 E-value=93 Score=27.39 Aligned_cols=71 Identities=11% Similarity=0.047 Sum_probs=45.8
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhc--cccCCCcc------c----cccchhHHHHHHHHHHHHHHHhh
Q 046511 121 AFAALRHFPWVQVPAYIMAQVSASICASFALKAVFH--PFMSGGVT------V----PSVNTGQAFALEFLITFNLLFVV 188 (282)
Q Consensus 121 a~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~--~~~~~~~t------~----p~~s~~~~~~~E~i~Tf~Lv~~v 188 (282)
.-++.||.+|.+.+--+.-=.+|=++|++++-.++. .....+.. . -+.+..+.|+-=+++.++..+.+
T Consensus 95 ~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~sg~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaV 174 (268)
T 3tds_E 95 AGMLNKGVSIKDTSKIWAYSWVGNLIGALVLGIIFVGTGLVDKGPVAEFFANTAASKASMPFTALFFRGILCNILVCVSV 174 (268)
T ss_dssp HHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSSHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCcHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 345788999999887777767777777665544332 11111100 0 14577888888888888888877
Q ss_pred hhe
Q 046511 189 TAV 191 (282)
Q Consensus 189 ~~~ 191 (282)
...
T Consensus 175 w~~ 177 (268)
T 3tds_E 175 LCS 177 (268)
T ss_dssp HHH
T ss_pred HHH
Confidence 754
No 29
>3kly_A Putative formate transporter 1; membrane protein, channel, structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Vibrio cholerae} PDB: 3klz_A*
Probab=43.66 E-value=1.5e+02 Score=26.07 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=44.6
Q ss_pred HHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhc---c-ccCCCc----------cccccchhHHHHHHHHHHHHHHHhh
Q 046511 123 AALRHFPWVQVPAYIMAQVSASICASFALKAVFH---P-FMSGGV----------TVPSVNTGQAFALEFLITFNLLFVV 188 (282)
Q Consensus 123 ~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~---~-~~~~~~----------t~p~~s~~~~~~~E~i~Tf~Lv~~v 188 (282)
.+.||.+|++.+--+.-=.+|=++|++++-.+.. . ....+. ..-+.+..+.|+-=+++.++..+.+
T Consensus 99 ~~~~~is~~~~lr~W~~v~~gNliGal~~a~l~~~s~~~~~~~~~~~~~~~~ia~~K~~~~~~~~f~~GIlcN~lVclaV 178 (280)
T 3kly_A 99 KASGKISWKELVRNWTVVYFGNLCGSIILVFIMLATRQFMEDGGQLGLNAMAISQHKLHHTFLQAFALGLMCNILVCLAV 178 (280)
T ss_dssp SSSSSCCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTTTTHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 5678899999887776666666666665443321 1 111110 0114578888888888999888887
Q ss_pred hhe
Q 046511 189 TAV 191 (282)
Q Consensus 189 ~~~ 191 (282)
...
T Consensus 179 w~~ 181 (280)
T 3kly_A 179 WMT 181 (280)
T ss_dssp HHH
T ss_pred HHH
Confidence 764
No 30
>4fc4_A Nitrite transporter NIRC; alpha-helical inner membrane protein, ION channel, cytoplasm membrane, transport protein; HET: BOG; 2.40A {Salmonella enterica subsp}
Probab=40.62 E-value=1.3e+02 Score=26.40 Aligned_cols=71 Identities=8% Similarity=-0.027 Sum_probs=43.1
Q ss_pred HHHHhcCCCcchhhHHHHHHHHHHHHHHHHHHHhhcc---c-cCC-Cc---cc----cccchhHHHHHHHHHHHHHHHhh
Q 046511 121 AFAALRHFPWVQVPAYIMAQVSASICASFALKAVFHP---F-MSG-GV---TV----PSVNTGQAFALEFLITFNLLFVV 188 (282)
Q Consensus 121 a~~l~g~~~~~~~~~Yi~aQ~lGa~~ga~l~~~~~~~---~-~~~-~~---t~----p~~s~~~~~~~E~i~Tf~Lv~~v 188 (282)
.-++.||.+|++.+--+.-=.+|=++|++++-.++.. . ... .. .. -+.+..+.|+-=+++.++..+.+
T Consensus 89 ~~~~~~~~s~~~~lr~W~~v~~gNliGa~~~a~l~~~~g~~~~~~~~~~~~~ia~~K~~~~~~~~f~~gIlcN~lVclaV 168 (261)
T 4fc4_A 89 LGVKAGTISHGQMWAILPQTWLGNLVGSVFVALLYSWGGGSLLPVDTSIVHSVALAKTTAPATVLFFKGALCNWLVCLAI 168 (261)
T ss_dssp HHHHHTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTSSCTTSHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHH
Confidence 3456789999998877766666666666554333211 1 001 10 01 13467788888888888888877
Q ss_pred hhe
Q 046511 189 TAV 191 (282)
Q Consensus 189 ~~~ 191 (282)
...
T Consensus 169 w~~ 171 (261)
T 4fc4_A 169 WMA 171 (261)
T ss_dssp HHH
T ss_pred HHH
Confidence 664
Done!