BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046512
         (68 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1ROV|A Chain A, Lipoxygenase-3 Treated With Cumene Hydroperoxide
          Length = 857

 Score = 28.9 bits (63), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 29  SLFLVYGLDQIGQNTKAVRSSIFDLN 54
           S FL YGL  + QN   +  S FDLN
Sbjct: 270 SDFLTYGLKSVSQNVLPLLQSAFDLN 295


>pdb|1IK3|A Chain A, Lipoxygenase-3 (Soybean) Complex With 13(S)-Hydroperoxy-
           9(Z),11(E)-Octadecadienoic Acid
 pdb|1HU9|A Chain A, Lipoxygenase-3 (Soybean) Complex With 4-Hydroperoxy-2-
           Methoxy-Phenol
 pdb|1JNQ|A Chain A, Lipoxygenase-3 (Soybean) Complex With Epigallocathechin
           (Egc)
 pdb|1N8Q|A Chain A, Lipoxygenase In Complex With Protocatechuic Acid
 pdb|1NO3|A Chain A, Refined Structure Of Soybean Lipoxygenase-3 With
           4-nitrocatechol At 2.15 Angstrom Resolution
 pdb|1RRH|A Chain A, Soybean Lipoxygenase (Lox-3) At Ambient Temperatures At
           2.0 A Resolution
 pdb|1RRL|A Chain A, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
 pdb|1RRL|B Chain B, Soybean Lipoxygenase (Lox-3) At 93k At 2.0 A Resolution
 pdb|1LNH|A Chain A, Lipoxygenase-3(Soybean) Non-Heme Fe(Ii) Metalloprotein
          Length = 857

 Score = 28.9 bits (63), Expect = 0.80,   Method: Composition-based stats.
 Identities = 13/26 (50%), Positives = 15/26 (57%)

Query: 29  SLFLVYGLDQIGQNTKAVRSSIFDLN 54
           S FL YGL  + QN   +  S FDLN
Sbjct: 270 SDFLTYGLKSVSQNVLPLLQSAFDLN 295


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.327    0.136    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,204,711
Number of Sequences: 62578
Number of extensions: 25239
Number of successful extensions: 38
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 36
Number of HSP's gapped (non-prelim): 2
length of query: 68
length of database: 14,973,337
effective HSP length: 38
effective length of query: 30
effective length of database: 12,595,373
effective search space: 377861190
effective search space used: 377861190
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)