BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046512
         (68 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|O94514|NOP56_SCHPO Nucleolar protein 56 OS=Schizosaccharomyces pombe (strain 972 /
          ATCC 24843) GN=nop56 PE=3 SV=1
          Length = 497

 Score = 54.3 bits (129), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/53 (50%), Positives = 36/53 (67%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +A YLLYE+A+ YSLF V G DQI   TK V+ S+ D++ F KV+   +F PF
Sbjct: 1  MADYLLYESATGYSLFDVVGADQIAAKTKEVQLSLQDISKFGKVVQLRSFIPF 53


>sp|Q54MT2|NOP56_DICDI Nucleolar protein 56 OS=Dictyostelium discoideum GN=nop56 PE=3
          SV=1
          Length = 540

 Score = 40.0 bits (92), Expect = 0.004,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 34/53 (64%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          +A ++L+ETA+ +++F + G++ I + T  V+ S+ D + FSKV   +   PF
Sbjct: 1  MATHILFETATGFNIFQLSGMESIAEFTDQVQKSMQDFSKFSKVCKMVGSLPF 53


>sp|Q12460|NOP56_YEAST Nucleolar protein 56 OS=Saccharomyces cerevisiae (strain ATCC
          204508 / S288c) GN=NOP56 PE=1 SV=1
          Length = 504

 Score = 40.0 bits (92), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 1/51 (1%)

Query: 19 YLLYETASNYSLFLVY-GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          YLL+E  + Y++F V    D IG   K V+  I D   F+K++  ++F PF
Sbjct: 6  YLLFEEPTGYAVFKVKLQQDDIGSRLKEVQEQINDFGAFTKLIELVSFAPF 56


>sp|Q5RA29|NOP56_PONAB Nucleolar protein 56 OS=Pongo abelii GN=NOP56 PE=2 SV=1
          Length = 594

 Score = 33.1 bits (74), Expect = 0.54,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + L++L+E A  Y+L  +  +++I      V  S+ +L  F  ++  +AF PF
Sbjct: 2  VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHNIVRLVAFCPF 54


>sp|O00567|NOP56_HUMAN Nucleolar protein 56 OS=Homo sapiens GN=NOP56 PE=1 SV=4
          Length = 594

 Score = 33.1 bits (74), Expect = 0.55,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + L++L+E A  Y+L  +  +++I      V  S+ +L  F  ++  +AF PF
Sbjct: 2  VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHSIVRLVAFCPF 54


>sp|Q95K50|NOP56_MACFA Nucleolar protein 56 OS=Macaca fascicularis GN=NOP56 PE=2 SV=1
          Length = 594

 Score = 32.7 bits (73), Expect = 0.59,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 29/53 (54%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + L++L+E A  Y+L  +  +++I      V  S+ +L  F  ++  +AF PF
Sbjct: 2  VLLHVLFEHAVGYALLALKEVEEISLLQPQVEESVLNLGKFHNIVRLVAFCPF 54


>sp|Q9D6Z1|NOP56_MOUSE Nucleolar protein 56 OS=Mus musculus GN=Nop56 PE=1 SV=2
          Length = 580

 Score = 31.2 bits (69), Expect = 2.0,   Method: Composition-based stats.
 Identities = 15/53 (28%), Positives = 28/53 (52%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + L++L+E A  Y+L  +  +++I      V   + +L  F  V+  +AF PF
Sbjct: 2  VLLHVLFEHAVGYALLALKEVEEISLLLPQVEECVLNLGKFHNVVRLVAFCPF 54


>sp|Q21276|YZVL_CAEEL Uncharacterized NOP5 family protein K07C5.4 OS=Caenorhabditis
          elegans GN=K07C5.4 PE=3 SV=1
          Length = 486

 Score = 30.0 bits (66), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 15/55 (27%), Positives = 29/55 (52%)

Query: 14 ASIALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + +  ++LYE A+ Y+L  +   D  G   + V ++  D   FS+++   +F PF
Sbjct: 2  SEVPHFVLYEHAAGYALMKIKEFDDAGLILQEVDAAHADGYKFSQIVELASFDPF 56


>sp|Q3SZ63|NOP56_BOVIN Nucleolar protein 56 OS=Bos taurus GN=NOP56 PE=2 SV=1
          Length = 596

 Score = 29.6 bits (65), Expect = 6.3,   Method: Composition-based stats.
 Identities = 14/53 (26%), Positives = 28/53 (52%)

Query: 16 IALYLLYETASNYSLFLVYGLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHPF 68
          + L++L+E A  Y+L  +  +++I      V   + +L  F  ++  +AF PF
Sbjct: 2  VLLHVLFEHAVGYALLALKEVEEIILLLPQVEECVLNLGKFHNIVRLVAFCPF 54


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.328    0.137    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,994,173
Number of Sequences: 539616
Number of extensions: 486709
Number of successful extensions: 1533
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1524
Number of HSP's gapped (non-prelim): 10
length of query: 68
length of database: 191,569,459
effective HSP length: 40
effective length of query: 28
effective length of database: 169,984,819
effective search space: 4759574932
effective search space used: 4759574932
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)