Query 046512
Match_columns 68
No_of_seqs 107 out of 323
Neff 4.8
Searched_HMMs 29240
Date Mon Mar 25 22:43:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b64_A Elongation factor 1-bet 81.1 0.68 2.3E-05 28.2 1.6 42 24-67 44-90 (91)
2 1f60_B Elongation factor EEF1B 78.3 0.69 2.3E-05 28.4 0.9 42 24-67 47-93 (94)
3 1gh8_A Translation elongation 66.4 2 6.9E-05 26.0 1.0 41 24-67 42-87 (89)
4 2ny1_A Envelope glycoprotein G 44.7 5.6 0.00019 29.3 0.5 15 22-36 71-85 (317)
5 2bf1_A SIV GP120, exterior mem 42.3 6 0.0002 29.1 0.3 15 22-36 72-86 (316)
6 2oy9_A UPF0223 protein BH2638; 39.1 5.8 0.0002 24.7 -0.2 17 18-34 61-77 (98)
7 2yy3_A Elongation factor 1-bet 39.0 7.2 0.00025 23.6 0.2 41 24-66 44-89 (91)
8 2nnw_A NOP5/NOP56 related prot 35.9 8.2 0.00028 28.7 0.2 18 19-38 13-30 (376)
9 4dkp_A Clade A/E 93TH057 HIV-1 35.4 9.6 0.00033 28.4 0.5 14 23-36 102-115 (353)
10 3jwd_A HIV-1 GP120 envelope gl 33.3 10 0.00035 28.6 0.3 14 23-36 115-128 (379)
11 3id6_A NOP5, PRE mRNA splicing 27.6 8.7 0.0003 27.2 -0.9 14 19-32 4-17 (268)
12 1zk6_A Foldase protein PRSA; a 25.8 14 0.00048 21.0 -0.1 15 21-35 78-92 (93)
13 3gpk_A PPIC-type peptidyl-prol 24.7 14 0.00048 22.4 -0.2 16 21-36 88-103 (112)
14 4g2p_A Chaperone SURA; structu 21.1 19 0.00063 21.4 -0.2 15 21-35 92-106 (110)
No 1
>1b64_A Elongation factor 1-beta; guanine nucleotide exchange factor, G-protein, translation elongation; NMR {Homo sapiens} SCOP: d.58.12.1
Probab=81.11 E-value=0.68 Score=28.23 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=33.1
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP 67 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p 67 (68)
-|.||+|.++. ++++. .++++++.++..+..-+.|-..+|.+
T Consensus 44 ~piafGikkL~i~~vveDd~v--~tD~lee~i~~~ed~VqSvdI~~~~k 90 (91)
T 1b64_A 44 VPVGYGIKKLQIQCVVEDDKV--GTDMLEEQITAFEDYVQSMDVAAFNK 90 (91)
T ss_dssp EESSSSCEEEEEEEEECTTSS--CHHHHHHHHTTCTTTEEEEEESCCBC
T ss_pred EEEEeeEEEEEEEEEEECCcc--ChHHHHHHHHhccCceeEEEEEEEEc
Confidence 36899998874 44443 68999999999888778888888875
No 2
>1f60_B Elongation factor EEF1BA; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: d.58.12.1 PDB: 1g7c_B* 2b7c_B 2b7b_B 1ije_B* 1ijf_B*
Probab=78.28 E-value=0.69 Score=28.40 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=32.7
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP 67 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p 67 (68)
-|.||+|.++. ++++. .++++++.++..+..-+.|-..+|.+
T Consensus 47 ~piafGlkkL~i~~vveDd~~--~tD~lee~i~~~ed~VqSvdI~~~~k 93 (94)
T 1f60_B 47 IPIGFGIKKLQINCVVEDDKV--SLDDLQQSIEEDEDHVQSTDIAAMQK 93 (94)
T ss_dssp EEEETTEEEEEEEEEEETTTC--CHHHHHHHHHTCTTTEEEEEEEEEEE
T ss_pred EEEeeeeEEEEEEEEEECCcc--ChHHHHHHHHhccCceeEEEEEEEEc
Confidence 36899998873 33443 68999999999888777888888764
No 3
>1gh8_A Translation elongation factor 1BETA; alpha-beta sandwich, gene regulation, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus} SCOP: d.58.12.1
Probab=66.44 E-value=2 Score=25.98 Aligned_cols=41 Identities=12% Similarity=0.138 Sum_probs=30.2
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP 67 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p 67 (68)
-|.||+|.++. ++++. .++++++.++..+. -+.|...+|.+
T Consensus 42 ~piafGlk~L~i~~vveD~~~--~td~lee~i~~~e~-Vqsvdv~~~~r 87 (89)
T 1gh8_A 42 EPIAFGLVALNVMVVVGDAEG--GTEAAEESLSGIEG-VSNIEVTDVRR 87 (89)
T ss_dssp EECSSSCEEEEEEEEESSSCG--GGGHHHHHHTTSCS-SEEEEEEEEEE
T ss_pred EEEEcceeeEEEEEEEEcCCc--ChHHHHHHHhccCC-ccEEEEEEEEe
Confidence 36899998863 44454 58999999998887 66677776654
No 4
>2ny1_A Envelope glycoprotein GP120; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Human immunodeficiency virus 1} SCOP: d.172.1.1 PDB: 2nxz_A* 2nxy_A* 1g9m_G* 1rzj_G* 2ny7_G* 2ny5_G* 3idx_G* 3idy_G* 2ny2_A* 1gc1_G* 2ny4_A* 2ny3_A* 2ny6_A* 2ny0_A* 1yym_G* 1rzk_G* 1g9n_G* 1yyl_G* 2i5y_G* 2i60_G* ...
Probab=44.73 E-value=5.6 Score=29.25 Aligned_cols=15 Identities=7% Similarity=0.290 Sum_probs=12.2
Q ss_pred hhccceehhheeccc
Q 046512 22 YETASNYSLFLVYGL 36 (68)
Q Consensus 22 fEtAaGYaLFkv~~~ 36 (68)
|=+|||||+.|+.|.
T Consensus 71 yCAPaGfAiLKCndk 85 (317)
T 2ny1_A 71 YCAPAGFAILKCNNK 85 (317)
T ss_dssp CBCCTTEEEEEECCT
T ss_pred eecCCceEEEEECCC
Confidence 447899999999754
No 5
>2bf1_A SIV GP120, exterior membrane glycoprotein GP120; virus protein, envelope glycoprotein, AIDS, coat protein; HET: NAG BMA NDG FUC MAN; 4.0A {Simian immunodeficiency virus} PDB: 3fus_A*
Probab=42.27 E-value=6 Score=29.12 Aligned_cols=15 Identities=20% Similarity=0.370 Sum_probs=12.4
Q ss_pred hhccceehhheeccc
Q 046512 22 YETASNYSLFLVYGL 36 (68)
Q Consensus 22 fEtAaGYaLFkv~~~ 36 (68)
|=+|||||+.|+.|.
T Consensus 72 yCAPaGfAiLkCndk 86 (316)
T 2bf1_A 72 YCAPPGYALLRCNDT 86 (316)
T ss_dssp CCSCTTCCBCCCCSS
T ss_pred eecccceEEEEECCC
Confidence 457999999999854
No 6
>2oy9_A UPF0223 protein BH2638; PFAM, structural genomics, PSI-2, protein structure initiative; 1.60A {Bacillus halodurans c-125} SCOP: a.276.1.1
Probab=39.06 E-value=5.8 Score=24.74 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.5
Q ss_pred HHhHhhccceehhheec
Q 046512 18 LYLLYETASNYSLFLVY 34 (68)
Q Consensus 18 ~~vLfEtAaGYaLFkv~ 34 (68)
+.-=||..+||.+|++.
T Consensus 61 l~reFE~~SGYS~Y~~V 77 (98)
T 2oy9_A 61 LFRAYEQENDVSCYQTI 77 (98)
T ss_dssp HHHHHHTTSSCCHHHHH
T ss_pred HHHHHHHHhCCcHHHHH
Confidence 45668999999999985
No 7
>2yy3_A Elongation factor 1-beta; structural genomics, NPPSFA, national Pro protein structural and functional analyses; 2.50A {Pyrococcus horikoshii}
Probab=39.01 E-value=7.2 Score=23.60 Aligned_cols=41 Identities=5% Similarity=-0.002 Sum_probs=27.7
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeecccc
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFH 66 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~ 66 (68)
-|.||+|-++. ++++. ..++++++.++..+. -+.|...+|.
T Consensus 44 ~pIafGlk~L~i~~vveD~~~-~~tD~lee~i~~~e~-VqSvdV~~~~ 89 (91)
T 2yy3_A 44 EPIAFGLVALKFYVLGRDEEG-YSFDEVAEKFEEVEN-VESAEVETVS 89 (91)
T ss_dssp EECTTSCEEEEEEEEECSSTT-CCHHHHHHHHHHSTT-EEEEEEEEEE
T ss_pred EEEEcceeeEEEEEEEECCCc-cccHHHHHHHhcCCC-ceEEEEEEEE
Confidence 36799988863 43443 158999999888774 4556666654
No 8
>2nnw_A NOP5/NOP56 related protein; box C/D; 2.70A {Pyrococcus furiosus} PDB: 3nvi_A 3nmu_A 3nvk_A* 3nvm_A
Probab=35.88 E-value=8.2 Score=28.70 Aligned_cols=18 Identities=6% Similarity=0.050 Sum_probs=12.2
Q ss_pred HhHhhccceehhheeccccc
Q 046512 19 YLLYETASNYSLFLVYGLDQ 38 (68)
Q Consensus 19 ~vLfEtAaGYaLFkv~~~~~ 38 (68)
..|+||+.|| |.+.+.++
T Consensus 13 ~~l~~~~~G~--~~~~e~g~ 30 (376)
T 2nnw_A 13 AFISENVRGI--YAFDENGN 30 (376)
T ss_dssp -CEEECSSEE--EEBCSSSC
T ss_pred HHHHhcccee--EEEcCCCc
Confidence 6689999999 55554443
No 9
>4dkp_A Clade A/E 93TH057 HIV-1 GP120 core; CD4 mimic, AWS-I-50, viral protein-I complex; HET: NAG EPE 0LL; 1.80A {Human immunodeficiency virus type 1} PDB: 4dko_A* 4dkq_A* 4dkr_A* 3se8_G* 3ngb_G* 3se9_G* 3tgt_A* 3u7y_G* 3rjq_A* 3tgs_A* 3tgr_A* 3tih_A 3tgq_A* 3jwo_A* 2qad_A* 3hi1_G* 3dnl_B 3dnn_B 3dno_B 3dnl_C ...
Probab=35.37 E-value=9.6 Score=28.45 Aligned_cols=14 Identities=14% Similarity=0.178 Sum_probs=11.7
Q ss_pred hccceehhheeccc
Q 046512 23 ETASNYSLFLVYGL 36 (68)
Q Consensus 23 EtAaGYaLFkv~~~ 36 (68)
=+|||||+.|+.|.
T Consensus 102 CAPaGfAiLkCndk 115 (353)
T 4dkp_A 102 CTPAGYVILKCNDK 115 (353)
T ss_dssp ECCTTEEEEEECCT
T ss_pred cCCchheEEEecCc
Confidence 46899999999854
No 10
>3jwd_A HIV-1 GP120 envelope glycoprotein; HIV-1 viral spike, molecular motion, protein architecture, R triggered entry, type 1 fusion protein, cell membrane, DISU bond; HET: YCM NAG; 2.61A {Human immunodeficiency virus 1} PDB: 1meq_A
Probab=33.29 E-value=10 Score=28.56 Aligned_cols=14 Identities=0% Similarity=0.126 Sum_probs=11.6
Q ss_pred hccceehhheeccc
Q 046512 23 ETASNYSLFLVYGL 36 (68)
Q Consensus 23 EtAaGYaLFkv~~~ 36 (68)
=+||||||.|+.|.
T Consensus 115 CAPaGfAiLKCndk 128 (379)
T 3jwd_A 115 CAPAGFAILKCNNK 128 (379)
T ss_dssp ECCTTEEEEECCCS
T ss_pred cCCchheEEEecCC
Confidence 46899999999854
No 11
>3id6_A NOP5, PRE mRNA splicing protein; C/D guide RNA, 2'-O-methylation, coiled-coil, methyltransfer binding, rRNA processing; HET: SAM; 2.60A {Sulfolobus solfataricus}
Probab=27.60 E-value=8.7 Score=27.25 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=11.1
Q ss_pred HhHhhccceehhhe
Q 046512 19 YLLYETASNYSLFL 32 (68)
Q Consensus 19 ~vLfEtAaGYaLFk 32 (68)
.-|+|++.||-.|.
T Consensus 4 ~yl~~~~~G~~a~d 17 (268)
T 3id6_A 4 IYLIEHVIGAVAYD 17 (268)
T ss_dssp EEEEEETTEEEEEC
T ss_pred EEEEecceeeEEEC
Confidence 34789999998884
No 12
>1zk6_A Foldase protein PRSA; alpha/beta structure, isomerase; NMR {Bacillus subtilis}
Probab=25.79 E-value=14 Score=20.96 Aligned_cols=15 Identities=13% Similarity=0.080 Sum_probs=12.4
Q ss_pred Hhhccceehhheecc
Q 046512 21 LYETASNYSLFLVYG 35 (68)
Q Consensus 21 LfEtAaGYaLFkv~~ 35 (68)
.++|..||-|++|.+
T Consensus 78 pv~t~~G~hIi~v~~ 92 (93)
T 1zk6_A 78 PVKTQYGYHIIKKTE 92 (93)
T ss_dssp CEECSSCEEEEEEEE
T ss_pred eEEECCEEEEEEEec
Confidence 468999999999874
No 13
>3gpk_A PPIC-type peptidyl-prolyl CIS-trans isomerase; rotamase,ppiase domain, 11189O3,PSI2., structural genomics; 1.55A {Novosphingobium aromaticivorans}
Probab=24.72 E-value=14 Score=22.36 Aligned_cols=16 Identities=13% Similarity=0.231 Sum_probs=13.4
Q ss_pred Hhhccceehhheeccc
Q 046512 21 LYETASNYSLFLVYGL 36 (68)
Q Consensus 21 LfEtAaGYaLFkv~~~ 36 (68)
.++|..||-|++|.+.
T Consensus 88 pv~t~~G~hIikv~~~ 103 (112)
T 3gpk_A 88 PVEIRGGFSILYLIDK 103 (112)
T ss_dssp EEEETTEEEEEEEEEE
T ss_pred eEEECCEEEEEEEEeE
Confidence 4689999999999753
No 14
>4g2p_A Chaperone SURA; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, pcsep; 1.82A {Salmonella enterica subsp}
Probab=21.05 E-value=19 Score=21.44 Aligned_cols=15 Identities=7% Similarity=0.118 Sum_probs=12.7
Q ss_pred Hhhccceehhheecc
Q 046512 21 LYETASNYSLFLVYG 35 (68)
Q Consensus 21 LfEtAaGYaLFkv~~ 35 (68)
.++|..||-+++|.+
T Consensus 92 pv~t~~G~hIikv~~ 106 (110)
T 4g2p_A 92 PVHSSFGWHLIELLD 106 (110)
T ss_dssp CEEETTEEEEEEEEE
T ss_pred cEEECCEEEEEEEEE
Confidence 468999999999974
Done!