Query 046512
Match_columns 68
No_of_seqs 107 out of 323
Neff 4.8
Searched_HMMs 13730
Date Mon Mar 25 22:43:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046512.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046512hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1b64a_ d.58.12.1 (A:) Guanine 79.1 0.41 3E-05 27.7 1.6 42 24-67 44-90 (91)
2 d1f60b_ d.58.12.1 (B:) Guanine 77.2 0.36 2.6E-05 27.9 0.9 41 25-67 44-89 (90)
3 d2nxya1 d.172.1.1 (A:83-491) g 58.5 1.2 8.5E-05 30.9 0.5 15 23-37 72-86 (316)
4 d2oy9a1 a.276.1.1 (A:6-90) Unc 50.7 1.4 0.0001 25.5 -0.2 17 18-34 56-72 (85)
5 d1jnsa_ d.26.1.1 (A:) Parvulin 36.9 3.6 0.00026 22.5 0.1 14 22-35 77-90 (92)
6 d1gh8a_ d.58.12.1 (A:) aEF-1be 33.3 7 0.00051 21.9 1.0 39 24-65 42-85 (89)
7 d1m5ya3 d.26.1.1 (A:279-386) P 29.6 4.9 0.00036 22.4 -0.1 16 22-37 91-106 (108)
8 d2pv2a1 d.26.1.1 (A:172-274) P 29.5 4.9 0.00036 22.0 -0.2 15 21-35 87-101 (103)
9 d1eq3a_ d.26.1.1 (A:) Parvulin 18.9 11 0.00082 20.7 -0.0 15 21-35 80-94 (96)
10 d2ns9a1 d.129.3.10 (A:10-156) 18.2 44 0.0032 17.2 2.5 27 34-60 6-32 (147)
No 1
>d1b64a_ d.58.12.1 (A:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=79.06 E-value=0.41 Score=27.66 Aligned_cols=42 Identities=14% Similarity=0.268 Sum_probs=33.0
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP 67 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p 67 (68)
-|.||+|.++. ++++. .++++++.++..+..-+.|...+|++
T Consensus 44 ~PIaFGlkkL~i~~vveDd~~--~~D~lee~i~~~Ed~VqsvdI~s~nk 90 (91)
T d1b64a_ 44 VPVGYGIKKLQIQCVVEDDKV--GTDMLEEQITAFEDYVQSMDVAAFNK 90 (91)
T ss_dssp EESSSSCEEEEEEEEECTTSS--CHHHHHHHHTTCTTTEEEEEESCCBC
T ss_pred EEEEeeeeeEEEEEEEEeCCc--ChHHHHHHHHhhcCceeEEEEEEeec
Confidence 36799998874 44443 68999999999988778888888875
No 2
>d1f60b_ d.58.12.1 (B:) Guanine nucleotide exchange factor (GEF) domain from elongation factor-1 beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=77.24 E-value=0.36 Score=27.86 Aligned_cols=41 Identities=10% Similarity=0.061 Sum_probs=32.6
Q ss_pred cceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccccC
Q 046512 25 ASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAFHP 67 (68)
Q Consensus 25 AaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF~p 67 (68)
|.||+|.++. ++++ ..++++++.++..+..-+.|-..+|++
T Consensus 44 PiafGlkkL~i~~vveDd~--~~~D~lee~i~~~Ed~VqSvdI~~~~k 89 (90)
T d1f60b_ 44 PIGFGIKKLQINCVVEDDK--VSLDDLQQSIEEDEDHVQSTDIAAMQK 89 (90)
T ss_dssp EEETTEEEEEEEEEEETTT--CCHHHHHHHHHTCTTTEEEEEEEEEEE
T ss_pred EEeeeeeeEEEEEEEEeCC--cCHHHHHHHHHhhcCceeEEEEEEEec
Confidence 6899999874 3344 368999999999988888888888865
No 3
>d2nxya1 d.172.1.1 (A:83-491) gp120 core {Human immunodeficiency virus type 1 [TaxId: 11676]}
Probab=58.52 E-value=1.2 Score=30.89 Aligned_cols=15 Identities=0% Similarity=0.118 Sum_probs=12.3
Q ss_pred hccceehhheecccc
Q 046512 23 ETASNYSLFLVYGLD 37 (68)
Q Consensus 23 EtAaGYaLFkv~~~~ 37 (68)
=+|+||||+|+.|.+
T Consensus 72 CAPaG~aiLKCnd~~ 86 (316)
T d2nxya1 72 CAPAGFAILKCNNKT 86 (316)
T ss_dssp BCCTTEEEEEECCTT
T ss_pred eccchheeeeecCcc
Confidence 478999999998643
No 4
>d2oy9a1 a.276.1.1 (A:6-90) Uncharacterized protein BH2638 {Bacillus halodurans [TaxId: 86665]}
Probab=50.69 E-value=1.4 Score=25.45 Aligned_cols=17 Identities=24% Similarity=0.444 Sum_probs=14.2
Q ss_pred HHhHhhccceehhheec
Q 046512 18 LYLLYETASNYSLFLVY 34 (68)
Q Consensus 18 ~~vLfEtAaGYaLFkv~ 34 (68)
+.-=||.++||.+|++.
T Consensus 56 l~reFe~~SGYS~Y~~v 72 (85)
T d2oy9a1 56 LFRAYEQENDVSCYQTI 72 (85)
T ss_dssp HHHHHHTTSSCCHHHHH
T ss_pred HHHHHHHhcCCcHHHHH
Confidence 35568999999999985
No 5
>d1jnsa_ d.26.1.1 (A:) Parvulin 10 (rotamase C) {Escherichia coli [TaxId: 562]}
Probab=36.89 E-value=3.6 Score=22.53 Aligned_cols=14 Identities=21% Similarity=0.216 Sum_probs=12.3
Q ss_pred hhccceehhheecc
Q 046512 22 YETASNYSLFLVYG 35 (68)
Q Consensus 22 fEtAaGYaLFkv~~ 35 (68)
++|+.||-+++|.+
T Consensus 77 i~t~~G~HIikv~d 90 (92)
T d1jnsa_ 77 LHTQFGYHIIKVLY 90 (92)
T ss_dssp EEETTEEEEEEEEC
T ss_pred EEeCCeEEEEEEEe
Confidence 68999999999974
No 6
>d1gh8a_ d.58.12.1 (A:) aEF-1beta {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=33.32 E-value=7 Score=21.88 Aligned_cols=39 Identities=13% Similarity=0.187 Sum_probs=26.5
Q ss_pred ccceehhheec-----cccccccchHHHHHHhcCHHhhhcceeeccc
Q 046512 24 TASNYSLFLVY-----GLDQIGQNTKAVRSSIFDLNCFSKVLHFMAF 65 (68)
Q Consensus 24 tAaGYaLFkv~-----~~~~i~~~~~~v~~~~~d~~~f~k~VkL~aF 65 (68)
-|.||+|.++. ++++ ..++++++.++..+.. +.|...+|
T Consensus 42 ~PiaFGLk~L~v~~vv~D~~--g~~D~lee~i~~ie~V-qsvev~~~ 85 (89)
T d1gh8a_ 42 EPIAFGLVALNVMVVVGDAE--GGTEAAEESLSGIEGV-SNIEVTDV 85 (89)
T ss_dssp EECSSSCEEEEEEEEESSSC--GGGGHHHHHHTTSCSS-EEEEEEEE
T ss_pred EEEEcceEeEEEEEEEEcCC--cChHHHHHHHhccCCC-cEEEeEEe
Confidence 47899998874 4343 3689999999887763 44444444
No 7
>d1m5ya3 d.26.1.1 (A:279-386) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=29.61 E-value=4.9 Score=22.40 Aligned_cols=16 Identities=6% Similarity=0.125 Sum_probs=13.1
Q ss_pred hhccceehhheecccc
Q 046512 22 YETASNYSLFLVYGLD 37 (68)
Q Consensus 22 fEtAaGYaLFkv~~~~ 37 (68)
+||+.||-+++|.+-.
T Consensus 91 i~t~~G~hIikl~~~r 106 (108)
T d1m5ya3 91 VHSSFGWHLIELLDTR 106 (108)
T ss_dssp EECSSCEEEEEEEEEE
T ss_pred EEeCCEEEEEEEEEEe
Confidence 5899999999997543
No 8
>d2pv2a1 d.26.1.1 (A:172-274) Porin chaperone SurA, PPIase domains {Escherichia coli [TaxId: 562]}
Probab=29.46 E-value=4.9 Score=22.05 Aligned_cols=15 Identities=7% Similarity=0.191 Sum_probs=12.8
Q ss_pred Hhhccceehhheecc
Q 046512 21 LYETASNYSLFLVYG 35 (68)
Q Consensus 21 LfEtAaGYaLFkv~~ 35 (68)
.+||+-||-+++|.+
T Consensus 87 pi~t~~G~hIikl~~ 101 (103)
T d2pv2a1 87 PIRSGVGFHILKVND 101 (103)
T ss_dssp EEEETTEEEEEEEEE
T ss_pred cEEECCEEEEEEEee
Confidence 579999999999863
No 9
>d1eq3a_ d.26.1.1 (A:) Parvulin {Human (Homo sapiens), hpar14 [TaxId: 9606]}
Probab=18.93 E-value=11 Score=20.67 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=12.5
Q ss_pred Hhhccceehhheecc
Q 046512 21 LYETASNYSLFLVYG 35 (68)
Q Consensus 21 LfEtAaGYaLFkv~~ 35 (68)
-+||..||-+++|.+
T Consensus 80 pi~T~~G~HIikv~~ 94 (96)
T d1eq3a_ 80 PVKTKFGYHIIMVEG 94 (96)
T ss_dssp CEEETTEEEEEEEEE
T ss_pred CEecCCeEEEEEEee
Confidence 468889999999974
No 10
>d2ns9a1 d.129.3.10 (A:10-156) Hypothetical protein APE2225 {Aeropyrum pernix [TaxId: 56636]}
Probab=18.20 E-value=44 Score=17.21 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=20.9
Q ss_pred ccccccccchHHHHHHhcCHHhhhcce
Q 046512 34 YGLDQIGQNTKAVRSSIFDLNCFSKVL 60 (68)
Q Consensus 34 ~~~~~i~~~~~~v~~~~~d~~~f~k~V 60 (68)
..+=+|....+.|++.+.|+++..+..
T Consensus 6 e~si~I~ap~e~Vw~~l~D~~~~~~w~ 32 (147)
T d2ns9a1 6 EGSFEVSKTPEEVFEFLTDPKRFSRAF 32 (147)
T ss_dssp EEEEEESSCHHHHHHHHTCHHHHGGGS
T ss_pred EEEEEEcCCHHHHHHHHhCHhhhhhcc
Confidence 334456678899999999999987764
Done!