Query 046513
Match_columns 660
No_of_seqs 229 out of 729
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 22:45:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1wee_A PHD finger family prote 99.6 1.9E-16 6.5E-21 132.2 2.9 66 589-654 5-70 (72)
2 1wew_A DNA-binding family prot 99.4 1.8E-14 6.3E-19 122.1 1.2 58 596-654 12-76 (78)
3 2rsd_A E3 SUMO-protein ligase 99.4 6.5E-14 2.2E-18 115.9 1.0 54 597-651 7-66 (68)
4 3o7a_A PHD finger protein 13 v 99.3 1.3E-13 4.3E-18 108.7 0.7 49 599-649 3-51 (52)
5 3o70_A PHD finger protein 13; 99.3 2.1E-13 7.3E-18 113.3 2.1 53 596-650 15-67 (68)
6 1we9_A PHD finger family prote 99.3 3.1E-13 1.1E-17 109.9 2.2 58 596-653 2-61 (64)
7 1wep_A PHF8; structural genomi 99.3 3.5E-13 1.2E-17 114.4 1.6 56 596-651 8-64 (79)
8 2lv9_A Histone-lysine N-methyl 99.3 8.5E-13 2.9E-17 116.5 3.9 57 596-654 24-80 (98)
9 3kqi_A GRC5, PHD finger protei 99.3 1.7E-13 6E-18 115.2 -0.8 56 595-650 5-61 (75)
10 1wem_A Death associated transc 99.2 4.2E-13 1.4E-17 112.8 -2.7 57 596-653 12-73 (76)
11 2kgg_A Histone demethylase jar 99.1 6.5E-12 2.2E-16 99.0 0.1 46 603-648 6-52 (52)
12 2k16_A Transcription initiatio 99.0 8.5E-11 2.9E-15 98.3 2.9 58 596-654 14-72 (75)
13 3kv4_A PHD finger protein 8; e 98.9 7.5E-11 2.6E-15 128.4 -3.7 55 597-651 2-57 (447)
14 1wen_A Inhibitor of growth fam 98.9 1.4E-09 4.8E-14 91.2 4.6 54 597-654 13-69 (71)
15 2ri7_A Nucleosome-remodeling f 98.9 1.4E-10 4.8E-15 110.3 -1.8 55 596-650 4-59 (174)
16 3kv5_D JMJC domain-containing 98.8 2.7E-10 9.3E-15 125.2 -1.0 56 595-650 32-88 (488)
17 1weu_A Inhibitor of growth fam 98.8 1.7E-09 5.7E-14 94.9 4.0 54 597-654 33-89 (91)
18 3c6w_A P28ING5, inhibitor of g 98.8 1E-09 3.6E-14 88.8 1.2 50 597-650 6-58 (59)
19 2g6q_A Inhibitor of growth pro 98.8 1.3E-09 4.3E-14 89.2 1.4 51 597-651 8-61 (62)
20 1x4i_A Inhibitor of growth pro 98.7 1.4E-09 4.7E-14 91.0 0.6 52 596-651 2-56 (70)
21 2vnf_A ING 4, P29ING4, inhibit 98.7 2.5E-09 8.4E-14 86.8 1.1 50 597-650 7-59 (60)
22 2jmi_A Protein YNG1, ING1 homo 98.7 4.6E-09 1.6E-13 92.0 1.8 51 595-649 21-75 (90)
23 2xb1_A Pygopus homolog 2, B-ce 98.6 1.9E-09 6.6E-14 96.3 -2.5 55 603-657 6-68 (105)
24 2vpb_A Hpygo1, pygopus homolog 98.5 5.8E-09 2E-13 86.1 -2.0 46 603-648 12-64 (65)
25 3lqh_A Histone-lysine N-methyl 98.5 1.2E-08 4E-13 99.5 -0.6 53 602-654 4-67 (183)
26 3pur_A Lysine-specific demethy 98.2 3.5E-07 1.2E-11 101.2 2.6 53 597-649 37-93 (528)
27 1f62_A Transcription factor WS 98.1 1.8E-06 6E-11 67.1 3.3 46 603-650 3-50 (51)
28 2ku7_A MLL1 PHD3-CYP33 RRM chi 97.8 5.7E-06 1.9E-10 73.6 2.3 39 615-653 2-47 (140)
29 1mm2_A MI2-beta; PHD, zinc fin 97.7 2E-05 6.8E-10 63.9 4.1 53 597-653 6-59 (61)
30 2yt5_A Metal-response element- 97.7 6.1E-06 2.1E-10 67.1 0.6 56 598-653 4-64 (66)
31 2ku3_A Bromodomain-containing 97.7 3.5E-06 1.2E-10 70.6 -1.1 49 600-651 16-67 (71)
32 2l5u_A Chromodomain-helicase-D 97.6 1.9E-05 6.3E-10 64.0 2.3 51 597-651 8-59 (61)
33 3asl_A E3 ubiquitin-protein li 97.6 3.3E-05 1.1E-09 64.3 3.9 45 604-650 23-69 (70)
34 2e6r_A Jumonji/ARID domain-con 97.6 1.3E-05 4.6E-10 69.9 1.1 48 601-650 17-66 (92)
35 2yql_A PHD finger protein 21A; 97.6 1.9E-05 6.3E-10 62.8 1.8 50 596-649 5-55 (56)
36 3rsn_A SET1/ASH2 histone methy 97.6 5.1E-05 1.8E-09 73.8 4.8 54 598-651 3-60 (177)
37 2puy_A PHD finger protein 21A; 97.5 6.9E-06 2.4E-10 66.0 -1.4 51 600-654 5-56 (60)
38 1xwh_A Autoimmune regulator; P 97.5 2.9E-05 1E-09 63.7 1.7 51 599-653 7-58 (66)
39 2e6s_A E3 ubiquitin-protein li 97.5 9.6E-05 3.3E-09 62.8 4.7 44 604-649 31-76 (77)
40 2l43_A N-teminal domain from h 97.4 3.6E-05 1.2E-09 66.8 1.5 49 601-652 26-77 (88)
41 2lri_C Autoimmune regulator; Z 97.2 0.00035 1.2E-08 57.7 4.5 50 601-654 13-63 (66)
42 3shb_A E3 ubiquitin-protein li 97.2 0.00024 8.3E-09 60.4 3.6 44 604-649 31-76 (77)
43 3ask_A E3 ubiquitin-protein li 97.1 0.00021 7.3E-09 71.9 3.2 46 602-649 176-224 (226)
44 3u5n_A E3 ubiquitin-protein li 97.1 0.00033 1.1E-08 68.6 4.3 48 602-653 9-57 (207)
45 3v43_A Histone acetyltransfera 97.0 0.00049 1.7E-08 61.6 4.6 46 604-650 66-112 (112)
46 2kwj_A Zinc finger protein DPF 97.0 0.00026 9.1E-09 63.6 2.2 47 602-650 60-108 (114)
47 3o36_A Transcription intermedi 96.8 0.00071 2.4E-08 64.9 4.0 46 603-652 7-53 (184)
48 4gne_A Histone-lysine N-methyl 96.8 0.00046 1.6E-08 62.1 2.3 45 598-648 13-60 (107)
49 1wev_A Riken cDNA 1110020M19; 96.7 0.00033 1.1E-08 60.6 0.9 54 600-653 16-75 (88)
50 2ysm_A Myeloid/lymphoid or mix 96.7 0.00069 2.3E-08 60.2 2.8 48 602-651 56-105 (111)
51 4bbq_A Lysine-specific demethy 96.6 0.00078 2.7E-08 60.1 2.1 43 609-651 69-115 (117)
52 1fp0_A KAP-1 corepressor; PHD 96.4 0.0035 1.2E-07 54.7 5.4 49 599-651 24-73 (88)
53 2ysm_A Myeloid/lymphoid or mix 95.5 0.0097 3.3E-07 52.7 4.0 47 601-648 8-55 (111)
54 2rno_A Putative DNA-binding pr 92.5 0.034 1.2E-06 49.8 1.1 46 527-582 63-109 (110)
55 3v43_A Histone acetyltransfera 91.4 0.034 1.2E-06 49.6 -0.2 38 611-648 22-62 (112)
56 3ivp_A Putative transposon-rel 86.9 1.2 4.2E-05 39.0 6.5 107 164-285 8-114 (126)
57 2kwj_A Zinc finger protein DPF 86.5 0.11 3.9E-06 46.4 -0.5 37 611-647 19-58 (114)
58 2lbm_A Transcriptional regulat 81.9 0.5 1.7E-05 44.5 1.7 53 596-652 59-119 (142)
59 3ql9_A Transcriptional regulat 79.9 0.33 1.1E-05 45.0 -0.2 54 595-652 52-113 (129)
60 2l7p_A Histone-lysine N-methyl 70.8 1.8 6.3E-05 38.5 2.1 33 613-646 26-58 (100)
61 1b0n_A Protein (SINR protein); 68.2 10 0.00034 31.8 6.1 100 169-282 2-107 (111)
62 3op9_A PLI0006 protein; struct 68.1 10 0.00036 32.3 6.3 102 167-283 8-111 (114)
63 1yop_A KTI11P; zinc finger, me 65.2 2 6.9E-05 37.1 1.1 37 591-627 14-57 (83)
64 2jr7_A DPH3 homolog; DESR1, CS 64.5 1.9 6.3E-05 37.8 0.8 39 590-628 13-58 (89)
65 1wge_A Hypothetical protein 26 60.7 3.1 0.00011 35.9 1.5 38 590-627 20-64 (83)
66 2lq6_A Bromodomain-containing 55.1 4.5 0.00015 34.8 1.6 35 596-632 13-50 (87)
67 2v9v_A Selenocysteine-specific 53.8 30 0.001 30.3 6.9 67 333-401 59-128 (135)
68 2jx3_A Protein DEK; alpha heli 49.2 6.8 0.00023 36.2 1.9 80 187-287 21-109 (131)
69 1v2y_A 3300001G02RIK protein; 46.2 13 0.00043 33.0 3.1 21 521-541 22-42 (105)
70 2e61_A Zinc finger CW-type PWW 44.8 22 0.00075 29.5 4.1 31 614-646 17-49 (69)
71 1wil_A KIAA1045 protein; ring 40.8 9.3 0.00032 33.4 1.3 50 600-651 15-77 (89)
72 3lfp_A CSP231I C protein; tran 39.3 40 0.0014 27.9 5.0 87 169-277 2-92 (98)
73 2hqh_E Restin; beta/BETA struc 37.9 6.9 0.00024 27.1 0.0 13 87-99 1-13 (26)
74 1iym_A EL5; ring-H2 finger, ub 34.4 25 0.00087 25.9 2.7 46 602-651 7-53 (55)
75 1r7c_A Genome polyprotein; mem 34.1 14 0.00048 26.6 1.1 17 162-178 1-17 (31)
76 2dzj_A Synaptic glycoprotein S 33.7 26 0.00089 29.5 3.0 28 522-549 29-56 (88)
77 1weo_A Cellulose synthase, cat 31.3 8.9 0.0003 33.8 -0.4 47 603-652 19-69 (93)
78 1weq_A PHD finger protein 7; s 30.7 59 0.002 28.1 4.7 48 600-650 26-79 (85)
79 2bwf_A Ubiquitin-like protein 30.1 83 0.0028 24.5 5.3 20 521-540 18-37 (77)
80 1v5n_A PDI-like hypothetical p 29.3 21 0.00071 30.6 1.6 33 601-635 48-81 (89)
81 4eto_A Protein S100-A4; calciu 27.7 1E+02 0.0036 25.6 5.7 53 337-390 4-63 (93)
82 3a9j_A Ubiquitin; protein comp 25.9 44 0.0015 25.8 2.9 20 521-540 15-34 (76)
83 2l6l_A DNAJ homolog subfamily 25.7 20 0.00068 33.0 0.9 32 595-627 107-145 (155)
84 3mtn_B UBA80, ubcep1, ubiquiti 24.4 51 0.0018 26.2 3.1 20 521-540 18-37 (85)
85 1xax_A Hypothetical UPF0054 pr 24.0 18 0.00061 34.2 0.3 14 135-148 112-125 (154)
86 2wyq_A HHR23A, UV excision rep 23.9 1.3E+02 0.0044 24.0 5.4 20 521-540 20-39 (85)
87 3n22_A Protein S100-A2; EF-han 23.4 1.2E+02 0.0041 25.6 5.4 52 337-389 5-63 (98)
88 1xm5_A Hypothetical UPF0054 pr 23.0 17 0.00058 34.4 -0.1 14 135-148 112-125 (155)
89 2kzr_A Ubiquitin thioesterase 22.4 48 0.0016 27.3 2.6 21 520-540 13-34 (86)
90 1lva_A Selenocysteine-specific 22.1 1.6E+02 0.0056 29.0 6.9 67 333-401 59-128 (258)
91 1ndd_A NEDD8, protein (ubiquit 22.0 58 0.002 25.1 2.9 20 521-540 15-34 (76)
92 1oz9_A Hypothetical protein AQ 22.0 18 0.00063 33.9 -0.1 14 135-148 113-126 (150)
93 3n3k_B Ubiquitin; hydrolase, p 21.8 58 0.002 25.9 2.9 20 521-540 18-37 (85)
94 3czq_A Putative polyphosphate 21.7 56 0.0019 34.0 3.5 89 139-236 79-180 (304)
95 2e2z_A TIM15; protein import, 21.3 22 0.00075 31.7 0.3 26 600-625 13-48 (100)
96 2dzi_A Ubiquitin-like protein 21.1 59 0.002 25.6 2.8 19 521-539 22-40 (81)
97 3p57_A Myocyte-specific enhanc 20.3 54 0.0018 28.6 2.5 54 227-280 28-87 (90)
No 1
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.60 E-value=1.9e-16 Score=132.24 Aligned_cols=66 Identities=52% Similarity=1.109 Sum_probs=58.2
Q ss_pred ccccccCCCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 589 KLRYEGGNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 589 ~~r~e~g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
..++|.+++++.++|+||.+++||++|||||.|+.|||..|+|++..+..|+.|+|+.|.++..++
T Consensus 5 ~~~~e~~~~~~~~~C~C~~~~~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~~~ps 70 (72)
T 1wee_A 5 SSGMERGVDNWKVDCKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIELSGPS 70 (72)
T ss_dssp SCCCSCSSCSSEECCTTCCCSCCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHHCSSC
T ss_pred cccccCCCCCcceEeeCCCccCCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCCCCCC
Confidence 346788889999999999998888899999999999999999999766678999999998765543
No 2
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.43 E-value=1.8e-14 Score=122.15 Aligned_cols=58 Identities=33% Similarity=0.769 Sum_probs=50.3
Q ss_pred CCCccEEeecCCCCCCCCceeecC--CCCceecccccccCCCC-----CCCCceecCCCCCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACD--ICEVWQHTRCHGIEDSG-----TVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD--~C~vWQH~~CvgI~~~~-----~~pd~fvC~~C~~~~~~~ 654 (660)
.+++.++|+||..+++| +||||| .|+.|||+.||||+... ..++.|+|+.|..++.++
T Consensus 12 ~~~~~~~CiC~~~~~~g-~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~~~ 76 (78)
T 1wew_A 12 QPEIKVRCVCGNSLETD-SMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPS 76 (78)
T ss_dssp SCCCCCCCSSCCCCCCS-CEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCSCC
T ss_pred CCCCCEEeECCCcCCCC-CEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccCCC
Confidence 34689999999997777 999999 99999999999999764 457999999998876654
No 3
>2rsd_A E3 SUMO-protein ligase SIZ1; E3 SUMO ligase, plant homeodomain (PHD), histone binding; NMR {Oryza sativa japonica group}
Probab=99.37 E-value=6.5e-14 Score=115.92 Aligned_cols=54 Identities=37% Similarity=0.790 Sum_probs=45.5
Q ss_pred CCccEEeecCCCCCCCCceeecCC--CCceecccccccCCCC----CCCCceecCCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDI--CEVWQHTRCHGIEDSG----TVPPLFVCPRCCSSF 651 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~--C~vWQH~~CvgI~~~~----~~pd~fvC~~C~~~~ 651 (660)
.+..|+|+||.++++| +||+||. |+.|||..||||+..+ ..|+.|+|+.|+.++
T Consensus 7 ~e~~v~C~C~~~~~~g-~mI~CD~~~C~~W~H~~Cvgi~~~~~~~~~~p~~~~C~~Cr~~r 66 (68)
T 2rsd_A 7 PEAKVRCICSSTMVND-SMIQCEDQRCQVWQHLNCVLIPDKPGESAEVPPVFYCELCRLSR 66 (68)
T ss_dssp SSCEECCTTCCCSCCS-CEEECSCTTTCEEEETTTSCCCSSTTSCCCCCSSCCCHHHHHHH
T ss_pred CCCCEEeECCCCcCCC-CEEEECCCCCCCeEchhhCCCCcccccccCCCCcEECcCccCcc
Confidence 3568999999998888 8999994 9999999999998643 246799999997654
No 4
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=99.34 E-value=1.3e-13 Score=108.65 Aligned_cols=49 Identities=37% Similarity=0.872 Sum_probs=42.8
Q ss_pred ccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCC
Q 046513 599 WIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCS 649 (660)
Q Consensus 599 ~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~ 649 (660)
..++|+||.+++ |++|||||.|+.|||..|+|++.. ..|+.|+|+.|..
T Consensus 3 d~~~C~C~~~~~-~~~MI~Cd~C~~W~H~~Cvgi~~~-~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 3 DLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRD 51 (52)
T ss_dssp TCBCSTTCCBCT-TCCEEECTTTCCEEETTTTTCCGG-GCCSSCCCHHHHT
T ss_pred cCeEEEeCCcCC-CCCEEEcCCCCccccccccCCCcc-cCCCcEECcCCCC
Confidence 368999999876 459999999999999999999965 5689999999964
No 5
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=99.34 E-value=2.1e-13 Score=113.34 Aligned_cols=53 Identities=36% Similarity=0.800 Sum_probs=46.0
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSS 650 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~ 650 (660)
.+...++|+|+..++ |++|||||.|+.|||+.|+||+.. ..|+.|+|+.|...
T Consensus 15 ~~~~~~~CiC~~~~~-~~~MIqCd~C~~WfH~~Cvgi~~~-~~~~~~~C~~C~~s 67 (68)
T 3o70_A 15 YFQGLVTCFCMKPFA-GRPMIECNECHTWIHLSCAKIRKS-NVPEVFVCQKCRDS 67 (68)
T ss_dssp TTTTCCCSTTCCCCT-TCCEEECTTTCCEEETTTTTCCTT-SCCSSCCCHHHHTC
T ss_pred CCCCceEeECCCcCC-CCCEEECCCCCccccccccCcCcc-cCCCcEECCCCCCC
Confidence 456789999999866 569999999999999999999965 56899999999754
No 6
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=99.32 E-value=3.1e-13 Score=109.94 Aligned_cols=58 Identities=28% Similarity=0.710 Sum_probs=48.5
Q ss_pred CCCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCC-CCceecCCCCCCCCC
Q 046513 596 NDKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTV-PPLFVCPRCCSSFAP 653 (660)
Q Consensus 596 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~-pd~fvC~~C~~~~~~ 653 (660)
.++...+| +|+.+++++++|||||.|+.|||..|+|++..... ++.|+|+.|..+..+
T Consensus 2 s~~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 2 SSGSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp CCSSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 35677889 99999877679999999999999999999975433 689999999876543
No 7
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.30 E-value=3.5e-13 Score=114.36 Aligned_cols=56 Identities=29% Similarity=0.682 Sum_probs=48.2
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCC-CCCceecCCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGT-VPPLFVCPRCCSSF 651 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~-~pd~fvC~~C~~~~ 651 (660)
.+.+.++|+|+..+|++.+|||||.|+.|||..|++++..+. .++.|+|+.|....
T Consensus 8 ~~~~~~~C~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 8 MALVPVYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCCCSTTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred ccCCccEEEcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 467899999999987666999999999999999999986543 36899999998764
No 8
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=99.30 E-value=8.5e-13 Score=116.55 Aligned_cols=57 Identities=37% Similarity=0.908 Sum_probs=48.9
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
.+++.|+|+||..+++| .||+||.|..|||..|++++. ..+|+.|+|+.|.++....
T Consensus 24 ~~~d~vrCiC~~~~~~~-~mi~Cd~C~~w~H~~C~~~~~-~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 24 YGTDVTRCICGFTHDDG-YMICCDKCSVWQHIDCMGIDR-QHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp CCCCBCCCTTSCCSCSS-CEEEBTTTCBEEETTTTTCCT-TSCCSSBCCTTTSSSCCCH
T ss_pred CCCCCEEeECCCccCCC-cEEEcCCCCCcCcCcCCCCCc-cCCCCCEECCCCcCCCCCH
Confidence 34578999999998887 899999999999999999975 3568899999998876543
No 9
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=99.29 E-value=1.7e-13 Score=115.24 Aligned_cols=56 Identities=29% Similarity=0.664 Sum_probs=47.8
Q ss_pred CCCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCC-CCCceecCCCCCC
Q 046513 595 GNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGT-VPPLFVCPRCCSS 650 (660)
Q Consensus 595 g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~-~pd~fvC~~C~~~ 650 (660)
+.+.+.++|+|+.++|++++|||||.|+.|||..|+|+++.+. .++.|+|+.|...
T Consensus 5 ~~~~~~~yCiC~~~~~~~~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~ 61 (75)
T 3kqi_A 5 SMATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61 (75)
T ss_dssp TTCCCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHH
T ss_pred CCCCCeeEEECCCcCCCCCCEEEcCCCCCCEecccccccccccCCCCEEECCCCccc
Confidence 4578999999999877666999999999999999999997543 2489999999854
No 10
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=99.21 E-value=4.2e-13 Score=112.84 Aligned_cols=57 Identities=30% Similarity=0.715 Sum_probs=47.1
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCC-----CCCceecCCCCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGT-----VPPLFVCPRCCSSFAP 653 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~-----~pd~fvC~~C~~~~~~ 653 (660)
.+++.++|+|+..++++ +|||||.|+.|||..|+|++.... .+..|+|+.|..+..+
T Consensus 12 ~d~~~~~C~C~~~~~~~-~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~p 73 (76)
T 1wem_A 12 YDPNALYCICRQPHNNR-FMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGP 73 (76)
T ss_dssp CCTTCCCSTTCCCCCSS-CEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSCS
T ss_pred cCCCCCEEECCCccCCC-CEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccCc
Confidence 45678999999997755 899999999999999999986432 3689999999865544
No 11
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=99.12 E-value=6.5e-12 Score=98.95 Aligned_cols=46 Identities=26% Similarity=0.629 Sum_probs=39.6
Q ss_pred eecCCCCCCCCceeecC-CCCceecccccccCCCCCCCCceecCCCC
Q 046513 603 CECGAQDDDGERMVACD-ICEVWQHTRCHGIEDSGTVPPLFVCPRCC 648 (660)
Q Consensus 603 CiCG~~dDDGe~MIqCD-~C~vWQH~~CvgI~~~~~~pd~fvC~~C~ 648 (660)
|+|+.+++|+++||+|| .|+.|||..|+|++.....++.|+|+.|.
T Consensus 6 c~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 6 QNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp TTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 58999988888999999 89999999999998654345899999994
No 12
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=99.02 E-value=8.5e-11 Score=98.29 Aligned_cols=58 Identities=31% Similarity=0.729 Sum_probs=47.0
Q ss_pred CCCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 596 NDKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 596 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
.++....| +|+..++ |+.||+||.|..|||..|++++........|+|+.|..+..+.
T Consensus 14 ~~~~~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 14 WGNQIWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp SSCEEECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred cCCCCcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 35567789 8999864 5689999999999999999998755445799999998765443
No 13
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=98.87 E-value=7.5e-11 Score=128.43 Aligned_cols=55 Identities=31% Similarity=0.699 Sum_probs=46.1
Q ss_pred CCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCC-CCceecCCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTV-PPLFVCPRCCSSF 651 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~-pd~fvC~~C~~~~ 651 (660)
+.+.++|+|+.++|++.+|||||.|+.|||+.|+|++..+.. ++.|+|+.|..+.
T Consensus 2 ~~~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~ 57 (447)
T 3kv4_A 2 ASVPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLH 57 (447)
T ss_dssp -CCCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHH
T ss_pred CCCCeEEeCCCcCCCCCCeEEcCCCCcccccccCCcCcccccCCCEEECCCCcccc
Confidence 468999999998775569999999999999999999965433 4899999997643
No 14
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=98.86 E-value=1.4e-09 Score=91.16 Aligned_cols=54 Identities=31% Similarity=0.732 Sum_probs=44.1
Q ss_pred CCccEEeecCCCCCCCCceeecCC--CC-ceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDI--CE-VWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
++..++|+|+..+ +| .||+||. |. .|+|..|++++..+ ...|+|+.|.....+.
T Consensus 13 ~~~~~~C~C~~~~-~g-~MI~CD~~~C~~~wfH~~Cvgl~~~p--~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 13 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQESGPS 69 (71)
T ss_dssp TTSCCCSTTCCCS-CS-SEECCSCSSCSCCCEETTTTTCSSCC--SSCCCCTTTSSCSSSC
T ss_pred CCCCCEEECCCCC-CC-CEeEeeCCCCCCccEecccCCcCcCC--CCCEECCCCCcccccc
Confidence 4567899999975 57 7999999 77 79999999998532 3789999998776554
No 15
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=98.86 E-value=1.4e-10 Score=110.28 Aligned_cols=55 Identities=33% Similarity=0.794 Sum_probs=45.0
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCC-CCCCceecCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSG-TVPPLFVCPRCCSS 650 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~-~~pd~fvC~~C~~~ 650 (660)
.+++.++|+|+.++|++..||+||.|..|||..|+|++..+ ..++.|+|+.|...
T Consensus 4 ~~~~~~~C~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 4 GSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp ---CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCCCCcEeeCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 35688999999997766699999999999999999998643 24689999999864
No 16
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=98.83 E-value=2.7e-10 Score=125.24 Aligned_cols=56 Identities=32% Similarity=0.676 Sum_probs=47.3
Q ss_pred CCCCccEEeecCCCCCCCCceeecCCCCceecccccccCCCCC-CCCceecCCCCCC
Q 046513 595 GNDKWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGT-VPPLFVCPRCCSS 650 (660)
Q Consensus 595 g~d~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~-~pd~fvC~~C~~~ 650 (660)
+.+...++|+|+..+|++++|||||.|+.|||+.|+|++..+. .++.|+|+.|...
T Consensus 32 ~~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~ 88 (488)
T 3kv5_D 32 PPPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVL 88 (488)
T ss_dssp CCCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHH
T ss_pred cCCCCCeEEeCCCcCCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCC
Confidence 4467899999999877556999999999999999999997543 3589999999843
No 17
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=98.82 E-value=1.7e-09 Score=94.94 Aligned_cols=54 Identities=31% Similarity=0.732 Sum_probs=44.2
Q ss_pred CCccEEeecCCCCCCCCceeecCC--CC-ceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDI--CE-VWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
++..++|+|+..+ +| .||+||. |. .|+|..|++++..+ +..|+|+.|...+.+.
T Consensus 33 ~~e~~yCiC~~~~-~g-~MI~CD~~dC~~~WfH~~CVgl~~~p--~g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 33 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQESGPS 89 (91)
T ss_dssp SCCCBCSTTCCBC-CS-CCCCCSCSSCSCCCCCSTTTTCSSCC--CSSCCCTTTCCCCSSS
T ss_pred CCCCcEEECCCCC-CC-CEeEecCCCCCCCCEecccCCcCcCC--CCCEECcCccCcCCcC
Confidence 4577899999985 57 7999999 66 89999999998532 4789999998776554
No 18
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=98.78 E-value=1e-09 Score=88.80 Aligned_cols=50 Identities=28% Similarity=0.702 Sum_probs=40.4
Q ss_pred CCccEEeecCCCCCCCCceeecCC--CC-ceecccccccCCCCCCCCceecCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDI--CE-VWQHTRCHGIEDSGTVPPLFVCPRCCSS 650 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvgI~~~~~~pd~fvC~~C~~~ 650 (660)
.+..++|+|+..+ +| .||+||. |. .|+|..|+|++..+ ...|+|+.|..+
T Consensus 6 ~~e~~yC~C~~~~-~g-~mi~CD~~~C~~~wfH~~Cvgl~~~p--~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 6 SNEPTYCLCHQVS-YG-EMIGCDNPDCPIEWFHFACVDLTTKP--KGKWFCPRCVQE 58 (59)
T ss_dssp --CCEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCC--SSCCCCHHHHCC
T ss_pred CCCCcEEECCCCC-CC-CeeEeeCCCCCCCCEecccCCcccCC--CCCEECcCccCc
Confidence 4578999999974 57 7999999 77 79999999998643 378999999764
No 19
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=98.77 E-value=1.3e-09 Score=89.19 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=41.0
Q ss_pred CCccEEeecCCCCCCCCceeecCCCC---ceecccccccCCCCCCCCceecCCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDICE---VWQHTRCHGIEDSGTVPPLFVCPRCCSSF 651 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~C~---vWQH~~CvgI~~~~~~pd~fvC~~C~~~~ 651 (660)
.+..++|+|+.. ++| .||+||.|+ .|+|..|+|++.. ....|+|+.|..++
T Consensus 8 ~~e~~yC~C~~~-~~g-~MI~CD~c~C~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~~r 61 (62)
T 2g6q_A 8 PNEPTYCLCNQV-SYG-EMIGCDNEQCPIEWFHFSCVSLTYK--PKGKWYCPKCRGDN 61 (62)
T ss_dssp --CCEETTTTEE-CCS-EEEECSCTTCSSCEEETGGGTCSSC--CSSCCCCHHHHTCC
T ss_pred CCCCcEEECCCC-CCC-CeeeeeCCCCCcccEecccCCcCcC--CCCCEECcCcccCC
Confidence 356799999997 457 799999955 9999999999853 24799999997654
No 20
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=1.4e-09 Score=90.98 Aligned_cols=52 Identities=27% Similarity=0.658 Sum_probs=43.2
Q ss_pred CCCccEEeecCCCCCCCCceeecCCCC---ceecccccccCCCCCCCCceecCCCCCCC
Q 046513 596 NDKWIVKCECGAQDDDGERMVACDICE---VWQHTRCHGIEDSGTVPPLFVCPRCCSSF 651 (660)
Q Consensus 596 ~d~~~VrCiCG~~dDDGe~MIqCD~C~---vWQH~~CvgI~~~~~~pd~fvC~~C~~~~ 651 (660)
.++..++|+|+.. ++| .||+||.|+ .|+|..||+++.. ....|+|+.|....
T Consensus 2 ~~~~~~yC~C~~~-~~g-~MI~CD~cdC~~~WfH~~Cvgl~~~--p~~~w~Cp~C~~~~ 56 (70)
T 1x4i_A 2 SSGSSGYCICNQV-SYG-EMVGCDNQDCPIEWFHYGCVGLTEA--PKGKWYCPQCTAAM 56 (70)
T ss_dssp CCSCCCCSTTSCC-CCS-SEECCSCTTCSCCCEEHHHHTCSSC--CSSCCCCHHHHHHH
T ss_pred CCCCCeEEEcCCC-CCC-CEeEeCCCCCCccCCcccccccCcC--CCCCEECCCCCccc
Confidence 3567889999998 567 899999985 9999999999863 35899999997543
No 21
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=98.70 E-value=2.5e-09 Score=86.77 Aligned_cols=50 Identities=30% Similarity=0.740 Sum_probs=39.7
Q ss_pred CCccEEeecCCCCCCCCceeecCC--CC-ceecccccccCCCCCCCCceecCCCCCC
Q 046513 597 DKWIVKCECGAQDDDGERMVACDI--CE-VWQHTRCHGIEDSGTVPPLFVCPRCCSS 650 (660)
Q Consensus 597 d~~~VrCiCG~~dDDGe~MIqCD~--C~-vWQH~~CvgI~~~~~~pd~fvC~~C~~~ 650 (660)
++..++|+|+..+ +| .||+||. |. .|+|..|+|++..+ ...|+|+.|..+
T Consensus 7 ~~e~~~C~C~~~~-~g-~mi~CD~cdC~~~wfH~~Cvgl~~~p--~g~w~C~~C~~~ 59 (60)
T 2vnf_A 7 PNEPTYCLCHQVS-YG-EMIGCDNPDCSIEWFHFACVGLTTKP--RGKWFCPRCSQE 59 (60)
T ss_dssp --CCEETTTTEEC-CS-EEEECSCTTCSSCEEETGGGTCSSCC--SSCCCCHHHHC-
T ss_pred CCCCCEEECCCcC-CC-CEEEeCCCCCCCceEehhcCCCCcCC--CCCEECcCccCc
Confidence 4568999999975 57 7999999 55 89999999998532 378999999764
No 22
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=98.67 E-value=4.6e-09 Score=92.00 Aligned_cols=51 Identities=31% Similarity=0.636 Sum_probs=40.4
Q ss_pred CCCCccEEeecCCCCCCCCceeecCCCC---ceecccccccCCCCCCCCceecCC-CCC
Q 046513 595 GNDKWIVKCECGAQDDDGERMVACDICE---VWQHTRCHGIEDSGTVPPLFVCPR-CCS 649 (660)
Q Consensus 595 g~d~~~VrCiCG~~dDDGe~MIqCD~C~---vWQH~~CvgI~~~~~~pd~fvC~~-C~~ 649 (660)
.+++..++|+|+.. ++| .||+||.|+ .|+|..||||+..+ ...|+|+. |..
T Consensus 21 ~~~~~~~yCiC~~~-~~g-~MI~CD~c~C~~eWfH~~CVgl~~~p--~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 21 NNNQEEVYCFCRNV-SYG-PMVACDNPACPFEWFHYGCVGLKQAP--KGKWYCSKDCKE 75 (90)
T ss_dssp ---CCSCCSTTTCC-CSS-SEECCCSSSCSCSCEETTTSSCSSCT--TSCCCSSHHHHH
T ss_pred CCCCCCcEEEeCCC-CCC-CEEEecCCCCccccCcCccCCCCcCC--CCCccCChhhcc
Confidence 34567899999987 456 699999987 99999999998532 37999999 863
No 23
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=98.61 E-value=1.9e-09 Score=96.33 Aligned_cols=55 Identities=24% Similarity=0.741 Sum_probs=41.1
Q ss_pred e-ecCCCCCCCCceeecC-CCCceecccccccCCCC------CCCCceecCCCCCCCCCCccC
Q 046513 603 C-ECGAQDDDGERMVACD-ICEVWQHTRCHGIEDSG------TVPPLFVCPRCCSSFAPSRTE 657 (660)
Q Consensus 603 C-iCG~~dDDGe~MIqCD-~C~vWQH~~CvgI~~~~------~~pd~fvC~~C~~~~~~~~~~ 657 (660)
| +|+.+++|+..||+|| .|+.|+|..||||+... .....|+|+.|..+.....+.
T Consensus 6 C~iC~~p~~~~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~ 68 (105)
T 2xb1_A 6 CGACRSEVNDDQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSG 68 (105)
T ss_dssp CTTTCSBCCTTSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC---
T ss_pred CCCCCCccCCCCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCC
Confidence 5 6888865544899998 99999999999999632 123799999999776655443
No 24
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=98.51 E-value=5.8e-09 Score=86.06 Aligned_cols=46 Identities=22% Similarity=0.708 Sum_probs=38.2
Q ss_pred eecCCCCCCCCceeecC-CCCceecccccccCCCCC-----CC-CceecCCCC
Q 046513 603 CECGAQDDDGERMVACD-ICEVWQHTRCHGIEDSGT-----VP-PLFVCPRCC 648 (660)
Q Consensus 603 CiCG~~dDDGe~MIqCD-~C~vWQH~~CvgI~~~~~-----~p-d~fvC~~C~ 648 (660)
++|+.+.+++++||+|| .|+.|+|..||||+.... .| ..|+|+.|.
T Consensus 12 ~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvglt~~~~~~l~~e~~~~w~C~~C~ 64 (65)
T 2vpb_A 12 GICTNEVNDDQDAILCEASCQKWFHRICTGMTETAYGLLTAEASAVWGCDTCM 64 (65)
T ss_dssp TTTCSBCCTTSCEEEBTTTTCCEEEHHHHTCCHHHHHHHHHCTTEEECCHHHH
T ss_pred ccCCCccCCCCCeEecccCccccCchhccCCCHHHHHHhhccCCCcEECcCcc
Confidence 37999988878999999 999999999999996421 12 599999985
No 25
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=98.49 E-value=1.2e-08 Score=99.54 Aligned_cols=53 Identities=26% Similarity=0.755 Sum_probs=41.9
Q ss_pred Ee-ecCCCCCCCCc---eeecCCCCceecccccccCCCCC-----CC--CceecCCCCCCCCCC
Q 046513 602 KC-ECGAQDDDGER---MVACDICEVWQHTRCHGIEDSGT-----VP--PLFVCPRCCSSFAPS 654 (660)
Q Consensus 602 rC-iCG~~dDDGe~---MIqCD~C~vWQH~~CvgI~~~~~-----~p--d~fvC~~C~~~~~~~ 654 (660)
.| +|+..++++++ |||||.|+.|+|+.|+||++... .| ..|+|+.|.......
T Consensus 4 ~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~~ 67 (183)
T 3lqh_A 4 FCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPAE 67 (183)
T ss_dssp BCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSCH
T ss_pred cCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCHH
Confidence 48 59999877664 99999999999999999986311 23 389999998765443
No 26
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=98.21 E-value=3.5e-07 Score=101.25 Aligned_cols=53 Identities=25% Similarity=0.565 Sum_probs=39.2
Q ss_pred CCccEEeecCCC---CCCCCceeecCCCCceecccccccCCCCCC-CCceecCCCCC
Q 046513 597 DKWIVKCECGAQ---DDDGERMVACDICEVWQHTRCHGIEDSGTV-PPLFVCPRCCS 649 (660)
Q Consensus 597 d~~~VrCiCG~~---dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~-pd~fvC~~C~~ 649 (660)
+.....|.+... .+++.+||+||.|+.|+|+.||||+..++. .+.|+|+.|..
T Consensus 37 ~~~~~~~s~kk~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~ 93 (528)
T 3pur_A 37 EKEKPLMSKKKSHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVP 93 (528)
T ss_dssp -----CCSCCCTTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHH
T ss_pred hhhhccccccccccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcC
Confidence 344556665554 246679999999999999999999976554 48999999985
No 27
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=98.07 E-value=1.8e-06 Score=67.11 Aligned_cols=46 Identities=28% Similarity=0.678 Sum_probs=36.7
Q ss_pred e-ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCC
Q 046513 603 C-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSS 650 (660)
Q Consensus 603 C-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~ 650 (660)
| +|+..++++ .||.||.|..|+|..|++.+-. .+| ..|+|+.|...
T Consensus 3 C~vC~~~~~~~-~ll~Cd~C~~~~H~~Cl~p~l~-~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 3 CKVCRKKGEDD-KLILCDECNKAFHLFCLRPALY-EVPDGEWQCPACQPA 50 (51)
T ss_dssp CTTTCCSSCCS-CCEECTTTCCEECHHHHCTTCC-SCCSSCCSCTTTSCC
T ss_pred CCCCCCCCCCC-CEEECCCCChhhCcccCCCCcC-CCCCCcEECcCcccc
Confidence 5 699886655 8999999999999999975432 344 69999999653
No 28
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=97.82 E-value=5.7e-06 Score=73.64 Aligned_cols=39 Identities=23% Similarity=0.820 Sum_probs=31.1
Q ss_pred eeecCCCCceecccccccCCC-----CCC--CCceecCCCCCCCCC
Q 046513 615 MVACDICEVWQHTRCHGIEDS-----GTV--PPLFVCPRCCSSFAP 653 (660)
Q Consensus 615 MIqCD~C~vWQH~~CvgI~~~-----~~~--pd~fvC~~C~~~~~~ 653 (660)
||+||.|+.|+|..|++++++ ... ...|.|+.|......
T Consensus 2 mi~c~~c~~w~H~~c~~~~~~~~~~l~~lp~~~~~~c~~C~~~~~~ 47 (140)
T 2ku7_A 2 MMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHVD 47 (140)
T ss_dssp CCCCSCCSSCHHHHHCCCCHHHHHHHHSSCTTTTCCSSCCTTTSCC
T ss_pred ccccccCCCccCCcccccCHHHHHHHhhccccceeeCccccccccC
Confidence 999999999999999999852 122 348999999865443
No 29
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=97.74 E-value=2e-05 Score=63.86 Aligned_cols=53 Identities=25% Similarity=0.577 Sum_probs=39.4
Q ss_pred CCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCC
Q 046513 597 DKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAP 653 (660)
Q Consensus 597 d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~ 653 (660)
+.+...| +|+. .| .||.||.|..++|..|++.+-.......|+|+.|..+..+
T Consensus 6 d~~~~~C~vC~~---~g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~k 59 (61)
T 1mm2_A 6 DHHMEFCRVCKD---GG-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPALK 59 (61)
T ss_dssp CSSCSSCTTTCC---CS-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTCCT
T ss_pred cCCCCcCCCCCC---CC-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCchhc
Confidence 4455557 6874 34 6999999999999999996533222379999999876654
No 30
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=97.71 E-value=6.1e-06 Score=67.10 Aligned_cols=56 Identities=21% Similarity=0.428 Sum_probs=40.7
Q ss_pred CccEEe-ecCCCC-CCCCceeecCCCCceecccccccCCCCC---CCCceecCCCCCCCCC
Q 046513 598 KWIVKC-ECGAQD-DDGERMVACDICEVWQHTRCHGIEDSGT---VPPLFVCPRCCSSFAP 653 (660)
Q Consensus 598 ~~~VrC-iCG~~d-DDGe~MIqCD~C~vWQH~~CvgI~~~~~---~pd~fvC~~C~~~~~~ 653 (660)
.....| +|+..+ ++++.||.||.|..++|..|++++-... ....|+|+.|......
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~ 64 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTT 64 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSC
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcccc
Confidence 344557 799863 2334899999999999999999863221 2378999999765543
No 31
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=97.70 E-value=3.5e-06 Score=70.61 Aligned_cols=49 Identities=24% Similarity=0.683 Sum_probs=38.4
Q ss_pred cEEe-ecCCCC-CCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCCC
Q 046513 600 IVKC-ECGAQD-DDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSSF 651 (660)
Q Consensus 600 ~VrC-iCG~~d-DDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~~ 651 (660)
...| +|+..+ ++++.||.||.|..|+|..|++++. +| ..|+|+.|..+.
T Consensus 16 ~~~C~vC~~~~s~~~~~ll~CD~C~~~~H~~Cl~~~~---vP~g~W~C~~C~~~~ 67 (71)
T 2ku3_A 16 DAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSR 67 (71)
T ss_dssp SCSCSSSCCCCCCSSSCEEECSSSCCEEEHHHHTCSS---CCSSCCCCHHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCEEECCCCCCccccccCCCCc---CCCCCcCCccCcCcC
Confidence 3346 898864 3444899999999999999999984 44 689999997543
No 32
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=97.63 E-value=1.9e-05 Score=64.03 Aligned_cols=51 Identities=22% Similarity=0.480 Sum_probs=38.9
Q ss_pred CCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCC
Q 046513 597 DKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSF 651 (660)
Q Consensus 597 d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~ 651 (660)
+.+...| +|+. .| .||.||.|..|+|..|++.+-.......|+|+.|..+.
T Consensus 8 ~~~~~~C~vC~~---~g-~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~g 59 (61)
T 2l5u_A 8 TDHQDYCEVCQQ---GG-EIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKEG 59 (61)
T ss_dssp SCCCSSCTTTSC---CS-SEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGGS
T ss_pred CCCCCCCccCCC---CC-cEEECCCCChhhhhhccCCCCCCCCCCceECccccccc
Confidence 3455568 5886 34 79999999999999999986433233799999997653
No 33
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=97.63 E-value=3.3e-05 Score=64.33 Aligned_cols=45 Identities=31% Similarity=0.730 Sum_probs=35.2
Q ss_pred ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-C-ceecCCCCCC
Q 046513 604 ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-P-LFVCPRCCSS 650 (660)
Q Consensus 604 iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d-~fvC~~C~~~ 650 (660)
+||..++.| .||.||.|..|+|..|++.+-. .+| . .|+|+.|..+
T Consensus 23 ~C~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~-~~P~g~~W~C~~C~~~ 69 (70)
T 3asl_A 23 LCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRND 69 (70)
T ss_dssp TTCCCSCGG-GEEECTTTCCEEEGGGSSSCCS-SCCSSSCCCCTTTSCC
T ss_pred CCCCcCCCC-CEEEcCCCCCceecccCCCCcC-CCCCCCCcCCcCccCc
Confidence 578876555 8999999999999999995422 344 4 8999999753
No 34
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.60 E-value=1.3e-05 Score=69.92 Aligned_cols=48 Identities=27% Similarity=0.673 Sum_probs=38.3
Q ss_pred EEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCC
Q 046513 601 VKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSS 650 (660)
Q Consensus 601 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~ 650 (660)
..| +|+..++++ .||.||.|..|+|..|++.+-. .+| ..|+|+.|...
T Consensus 17 ~~C~vC~~~~~~~-~ll~CD~C~~~~H~~Cl~Ppl~-~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 17 YICQVCSRGDEDD-KLLFCDGCDDNYHIFCLLPPLP-EIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCSSSCCSGGGG-GCEECTTTCCEECSSSSSSCCS-SCCSSCCCCHHHHHH
T ss_pred CCCccCCCcCCCC-CEEEcCCCCchhccccCCCCcc-cCCCCCcCCccCcCc
Confidence 347 799986655 8999999999999999995532 344 69999999753
No 35
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.59 E-value=1.9e-05 Score=62.78 Aligned_cols=50 Identities=24% Similarity=0.586 Sum_probs=37.1
Q ss_pred CCCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCC
Q 046513 596 NDKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCS 649 (660)
Q Consensus 596 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~ 649 (660)
.+.....| +|+.. | .||.||.|..|+|..|++.+-.......|+|+.|..
T Consensus 5 ~~~~~~~C~vC~~~---g-~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 5 SSGHEDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp CCSSCCSCSSSCCS---S-CCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred cCCCCCCCccCCCC---C-eEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 34455568 68864 4 699999999999999999553222237999999954
No 36
>3rsn_A SET1/ASH2 histone methyltransferase complex subun; PHD domain, winged helix domain, binding, transcription; 2.10A {Homo sapiens} PDB: 3s32_A
Probab=97.56 E-value=5.1e-05 Score=73.81 Aligned_cols=54 Identities=26% Similarity=0.445 Sum_probs=39.2
Q ss_pred CccEEeecCCCCCCCCceeecCCCCceecccccccCCCCCCC----CceecCCCCCCC
Q 046513 598 KWIVKCECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP----PLFVCPRCCSSF 651 (660)
Q Consensus 598 ~~~VrCiCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p----d~fvC~~C~~~~ 651 (660)
+-...|-||.+-+-+..|+||+.|..|+|.+|+......-+| -.|.|..|.+..
T Consensus 3 ~~~~yCYCG~~~~~~~~mLqC~~C~qWFH~~Cl~~~~~~~lp~~~fY~F~C~~C~~~g 60 (177)
T 3rsn_A 3 TQAGSVDEENGRQLGEVELQCGICTKWFTADTFGIDTSSCLPFMTNYSFHCNVCHHSG 60 (177)
T ss_dssp --------CTTCCTTSCEEECTTTCCEEEGGGGTCCCTTCCTTCCSEEEECTTTSTTS
T ss_pred CeeeEEEcCCCCCCCceeEeeccccceecHHHhcccccCccccceeEEEEccccCCCC
Confidence 345689999988888899999999999999999987654455 478899998754
No 37
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=97.54 E-value=6.9e-06 Score=66.04 Aligned_cols=51 Identities=24% Similarity=0.578 Sum_probs=37.2
Q ss_pred cEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 600 IVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 600 ~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
...| +|+.. | .||.||.|..|+|..|++.+-.......|+|+.|.....+.
T Consensus 5 ~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 5 EDFCSVCRKS---G-QLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CSSCTTTCCC---S-SCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCcCCCCC---C-cEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 3347 68863 4 79999999999999999954322223799999997655433
No 38
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=97.49 E-value=2.9e-05 Score=63.66 Aligned_cols=51 Identities=20% Similarity=0.414 Sum_probs=37.6
Q ss_pred ccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCC
Q 046513 599 WIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAP 653 (660)
Q Consensus 599 ~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~ 653 (660)
+...| +|+. .| .||.||.|..|+|..|++.+-.......|+|+.|......
T Consensus 7 ~~~~C~vC~~---~g-~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~ 58 (66)
T 1xwh_A 7 NEDECAVCRD---GG-ELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQ 58 (66)
T ss_dssp CCCSBSSSSC---CS-SCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCC
T ss_pred CCCCCccCCC---CC-CEEEcCCCChhhcccccCCCcCcCCCCCeECccccCcccc
Confidence 44457 6885 34 6999999999999999995432222379999999865543
No 39
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.47 E-value=9.6e-05 Score=62.78 Aligned_cols=44 Identities=30% Similarity=0.698 Sum_probs=35.1
Q ss_pred ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-C-ceecCCCCC
Q 046513 604 ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-P-LFVCPRCCS 649 (660)
Q Consensus 604 iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d-~fvC~~C~~ 649 (660)
+|+..++.| .||.||.|..++|..|++.+-. .+| . .|+|+.|..
T Consensus 31 vC~~~~~~~-~ll~CD~C~~~yH~~Cl~Ppl~-~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 31 VCGGKHEPN-MQLLCDECNVAYHIYCLNPPLD-KVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCCCCCST-TEEECSSSCCEEETTSSSSCCS-SCCCSSCCCCTTTCC
T ss_pred CcCCcCCCC-CEEEcCCCCccccccccCCCcc-CCCCCCCcCCcCccC
Confidence 688876555 8999999999999999995422 345 3 799999964
No 40
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=97.42 E-value=3.6e-05 Score=66.79 Aligned_cols=49 Identities=27% Similarity=0.725 Sum_probs=39.1
Q ss_pred EEe-ecCCCC-CCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCCCC
Q 046513 601 VKC-ECGAQD-DDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSSFA 652 (660)
Q Consensus 601 VrC-iCG~~d-DDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~~~ 652 (660)
..| +|+..+ ++++.||.||.|..|+|..|++++. +| ..|+|+.|.....
T Consensus 26 ~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~---vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 26 AVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPY---IPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSS---CCSSCCCCHHHHHHTT
T ss_pred CcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCc---cCCCceECccccCccc
Confidence 446 899864 3445899999999999999999984 44 6999999976543
No 41
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=97.16 E-value=0.00035 Score=57.71 Aligned_cols=50 Identities=26% Similarity=0.632 Sum_probs=37.3
Q ss_pred EEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCCC
Q 046513 601 VKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAPS 654 (660)
Q Consensus 601 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~~ 654 (660)
..| +|+ +.| .||.||.|..++|..|+...-.......|+|+.|.....+.
T Consensus 13 ~~C~vC~---~~~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~p~ 63 (66)
T 2lri_C 13 ARCGVCG---DGT-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVTPA 63 (66)
T ss_dssp CCCTTTS---CCT-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCCCC
T ss_pred CCcCCCC---CCC-eEEECCCCCCceecccCCCccCcCCCCCEECccccCCCccC
Confidence 347 687 344 59999999999999999866432223789999998765544
No 42
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=97.15 E-value=0.00024 Score=60.40 Aligned_cols=44 Identities=32% Similarity=0.733 Sum_probs=33.8
Q ss_pred ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-Cc-eecCCCCC
Q 046513 604 ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PL-FVCPRCCS 649 (660)
Q Consensus 604 iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~-fvC~~C~~ 649 (660)
+|+..++.+ .||.||.|..++|..|++.+-. .+| .. |+|+.|..
T Consensus 31 vC~~~~d~~-~ll~CD~C~~~yH~~Cl~PpL~-~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 31 LCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN 76 (77)
T ss_dssp TTCCCSCGG-GEEECTTTCCEEETTTSSSCCS-SCCSSSCCCCTTTC-
T ss_pred ccCCCCCCc-ceeEeCCCCCccCcccCCCccc-CCCCCCceECcCccc
Confidence 577776555 8999999999999999995432 344 34 99999975
No 43
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=97.10 E-value=0.00021 Score=71.87 Aligned_cols=46 Identities=33% Similarity=0.790 Sum_probs=32.9
Q ss_pred Ee-ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-C-ceecCCCCC
Q 046513 602 KC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-P-LFVCPRCCS 649 (660)
Q Consensus 602 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d-~fvC~~C~~ 649 (660)
.| +||..++.| .|+.||.|..++|..|++.+-. .+| . .|+|+.|..
T Consensus 176 ~C~vC~~~~~~~-~lL~CD~C~~~yH~~CL~PPL~-~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPD-KQLMCDECDMAFHIYCLDPPLS-SVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC---CCEECSSSCCEECSCC--CCCC-SCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCC-CeEEcCCCCcceeCccCCCCcc-cCCCCCCCCCcCCcC
Confidence 46 688876555 8999999999999999995532 345 3 799999964
No 44
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=97.08 E-value=0.00033 Score=68.62 Aligned_cols=48 Identities=23% Similarity=0.488 Sum_probs=36.0
Q ss_pred Ee-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCCC
Q 046513 602 KC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFAP 653 (660)
Q Consensus 602 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~~ 653 (660)
.| +|+. .| .|+.||.|..|+|..|++.+-.......|+|+.|......
T Consensus 9 ~C~~C~~---~g-~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~~ 57 (207)
T 3u5n_A 9 WCAVCQN---GG-DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGKP 57 (207)
T ss_dssp SBTTTCC---CE-EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSSC
T ss_pred CCCCCCC---CC-ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcccc
Confidence 37 6873 34 5999999999999999976533222378999999876543
No 45
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=97.03 E-value=0.00049 Score=61.63 Aligned_cols=46 Identities=24% Similarity=0.645 Sum_probs=35.0
Q ss_pred ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCC
Q 046513 604 ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSS 650 (660)
Q Consensus 604 iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~ 650 (660)
+|+...++.+.|+.||.|..++|..|+..+-. .+| ..|+|+.|+++
T Consensus 66 vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~-~~P~~~W~C~~C~~k 112 (112)
T 3v43_A 66 SCRDQGKNADNMLFCDSCDRGFHMECCDPPLT-RMPKGMWICQICRPR 112 (112)
T ss_dssp TTCCCCCTTCCCEECTTTCCEECGGGCSSCCS-SCCSSCCCCTTTSCC
T ss_pred cccCcCCCccceEEcCCCCCeeecccCCCCCC-CCCCCCeECCCCCCc
Confidence 57765444448999999999999999975432 334 68999999764
No 46
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=96.96 E-value=0.00026 Score=63.60 Aligned_cols=47 Identities=26% Similarity=0.640 Sum_probs=37.1
Q ss_pred Ee-ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCC
Q 046513 602 KC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSS 650 (660)
Q Consensus 602 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~ 650 (660)
.| +||..+++| .|+.||.|..++|..|++.+-. .+| ..|+|+.|...
T Consensus 60 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~~~ 108 (114)
T 2kwj_A 60 SCILCGTSENDD-QLLFCDDCDRGYHMYCLNPPVA-EPPEGSWSCHLCWEL 108 (114)
T ss_dssp CCTTTTCCTTTT-TEEECSSSCCEEETTTSSSCCS-SCCSSCCCCHHHHHH
T ss_pred ccCcccccCCCC-ceEEcCCCCccccccccCCCcc-CCCCCCeECccccch
Confidence 45 688887666 7999999999999999995432 344 68999999643
No 47
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=96.81 E-value=0.00071 Score=64.92 Aligned_cols=46 Identities=22% Similarity=0.535 Sum_probs=35.1
Q ss_pred e-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCC
Q 046513 603 C-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFA 652 (660)
Q Consensus 603 C-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~ 652 (660)
| +|+. .| .|+.||.|..|+|..|+..+-.......|+|+.|.....
T Consensus 7 C~~C~~---~g-~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 7 CAVCQN---GG-ELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp CTTTCC---CS-SCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred cccCCC---CC-eeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 6 6873 35 599999999999999997653322236899999987654
No 48
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=96.79 E-value=0.00046 Score=62.14 Aligned_cols=45 Identities=29% Similarity=0.582 Sum_probs=33.2
Q ss_pred CccEEe-ecCCCCCCCCceeecC--CCCceecccccccCCCCCCCCceecCCCC
Q 046513 598 KWIVKC-ECGAQDDDGERMVACD--ICEVWQHTRCHGIEDSGTVPPLFVCPRCC 648 (660)
Q Consensus 598 ~~~VrC-iCG~~dDDGe~MIqCD--~C~vWQH~~CvgI~~~~~~pd~fvC~~C~ 648 (660)
.....| +|+ +.| .||.|| .|..|+|..|+++... ....|+|+.|.
T Consensus 13 ~~~~~C~~C~---~~G-~ll~CD~~~Cp~~fH~~Cl~L~~~--P~g~W~Cp~c~ 60 (107)
T 4gne_A 13 MHEDYCFQCG---DGG-ELVMCDKKDCPKAYHLLCLNLTQP--PYGKWECPWHQ 60 (107)
T ss_dssp SSCSSCTTTC---CCS-EEEECCSTTCCCEECTGGGTCSSC--CSSCCCCGGGB
T ss_pred CCCCCCCcCC---CCC-cEeEECCCCCCcccccccCcCCcC--CCCCEECCCCC
Confidence 344558 476 345 799999 8999999999997642 13678888664
No 49
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=96.72 E-value=0.00033 Score=60.59 Aligned_cols=54 Identities=24% Similarity=0.616 Sum_probs=39.8
Q ss_pred cEEe-ecCCCCCC-CCceeecCCCCceecccccccCCCC---CCC-CceecCCCCCCCCC
Q 046513 600 IVKC-ECGAQDDD-GERMVACDICEVWQHTRCHGIEDSG---TVP-PLFVCPRCCSSFAP 653 (660)
Q Consensus 600 ~VrC-iCG~~dDD-Ge~MIqCD~C~vWQH~~CvgI~~~~---~~p-d~fvC~~C~~~~~~ 653 (660)
...| +|+..++. ++.||.||.|...+|..|.+.+-.. .+| ..|+|+.|......
T Consensus 16 ~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 4457 79987542 2379999999999999999976432 133 78999999865433
No 50
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=96.70 E-value=0.00069 Score=60.16 Aligned_cols=48 Identities=29% Similarity=0.665 Sum_probs=37.5
Q ss_pred Ee-ecCCCCCCCCceeecCCCCceecccccccCCCCCCC-CceecCCCCCCC
Q 046513 602 KC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVP-PLFVCPRCCSSF 651 (660)
Q Consensus 602 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~p-d~fvC~~C~~~~ 651 (660)
.| +|+...++. .|+.||.|..++|..|+..+-. .+| ..|+|+.|....
T Consensus 56 ~C~~C~~~~~~~-~ll~Cd~C~~~yH~~Cl~ppl~-~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGEDS-KMLVCDTCDKGYHTFCLQPVMK-SVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSCCT-TEEECSSSCCEEEGGGSSSCCS-SCCSSCCCCHHHHCCS
T ss_pred cccccCccCCCC-CeeECCCCCcHHhHHhcCCccc-cCCCCCcCCcCCcCcC
Confidence 45 588876665 8999999999999999996533 334 799999996543
No 51
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=96.55 E-value=0.00078 Score=60.07 Aligned_cols=43 Identities=26% Similarity=0.707 Sum_probs=32.9
Q ss_pred CCCCCceeecCCCCceecccccccCCCC----CCCCceecCCCCCCC
Q 046513 609 DDDGERMVACDICEVWQHTRCHGIEDSG----TVPPLFVCPRCCSSF 651 (660)
Q Consensus 609 dDDGe~MIqCD~C~vWQH~~CvgI~~~~----~~pd~fvC~~C~~~~ 651 (660)
.+.++.|++|+.|+.|+|..|+++..+. ..++.|.|+.|.+..
T Consensus 69 ~~~~~~m~~C~~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~~~ 115 (117)
T 4bbq_A 69 QDFEKKLMECCICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQED 115 (117)
T ss_dssp CCGGGSCEEETTTCCEECGGGCCSCCCCEECSSSSSEEECTTTC---
T ss_pred cccCcceEEeeecCCeEECCCCCCCccccccccCCCCeECCCCcCCC
Confidence 3445679999999999999999997542 346789999998653
No 52
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=96.44 E-value=0.0035 Score=54.69 Aligned_cols=49 Identities=24% Similarity=0.468 Sum_probs=35.9
Q ss_pred ccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCC
Q 046513 599 WIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSF 651 (660)
Q Consensus 599 ~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~ 651 (660)
....| +|+.. | .++.||.|..-+|..|+..+-.......|+|+.|....
T Consensus 24 n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 33457 68853 4 59999999999999999554322223799999998554
No 53
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=95.50 E-value=0.0097 Score=52.70 Aligned_cols=47 Identities=23% Similarity=0.495 Sum_probs=36.3
Q ss_pred EEe-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCC
Q 046513 601 VKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCC 648 (660)
Q Consensus 601 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~ 648 (660)
..| +|+...+.. .||.|+.|...+|..|+++.........|+|+.|.
T Consensus 8 ~~C~~C~~~g~~~-~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 8 ANCAVCDSPGDLL-DQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp SCBTTTCCCCCTT-TSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCcCCCCCCCCc-CCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 347 698875544 68999999999999999998643224788888874
No 54
>2rno_A Putative DNA-binding protein; SUMO ligase, sumoylation, metal-BI zinc-finger, ligase; NMR {Oryza sativa subsp}
Probab=92.49 E-value=0.034 Score=49.77 Aligned_cols=46 Identities=22% Similarity=0.086 Sum_probs=36.1
Q ss_pred CCHHHH-HHHHHHHHHHHHhhhcceeeeeecccccCCcchhhcceeccCCeEEEeee
Q 046513 527 STVLEL-KEAAESALRDTYCIMENLGVTDVVNMQKLDDGELLFGAVESGSQVWIQGY 582 (660)
Q Consensus 527 ATv~dL-K~ea~~afrDtY~~~~~f~ve~l~~~~~~~d~~~~~g~i~sg~~v~vrG~ 582 (660)
+.-+-+ |++|.+.++|||++|+...+++| ++ ++++.|+.++.++|+
T Consensus 63 ~~K~~v~kE~vaKIVDDtYRKMqvSgAtDL---AS-------k~q~~sd~s~k~k~E 109 (110)
T 2rno_A 63 GRKNSLTKEAVAKIVDDTYRKMQIQCAPDL---AT-------RSHSGSDFSFRPIEE 109 (110)
T ss_dssp STTGGGSHHHHHHHHHHHHHHHHCTTCCCS---CT-------TCSSCSSSCSCCCTT
T ss_pred cccccccHHHHHHHHHHHHHHHhccCCccc---cc-------cCccccCcccccCCC
Confidence 333444 99999999999999999999999 44 677777776666654
No 55
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=91.40 E-value=0.034 Score=49.60 Aligned_cols=38 Identities=21% Similarity=0.451 Sum_probs=28.2
Q ss_pred CCCceeecCCCCceecccccccCCCC--CC-CCceecCCCC
Q 046513 611 DGERMVACDICEVWQHTRCHGIEDSG--TV-PPLFVCPRCC 648 (660)
Q Consensus 611 DGe~MIqCD~C~vWQH~~CvgI~~~~--~~-pd~fvC~~C~ 648 (660)
+++.||.|+.|...+|..|+++.... .+ ...|.|+.|.
T Consensus 22 ~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 22 KPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 44689999999999999999875211 11 3678777774
No 56
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=86.89 E-value=1.2 Score=38.97 Aligned_cols=107 Identities=13% Similarity=0.114 Sum_probs=84.7
Q ss_pred cchhhhHHHHhhhccceeeeeeeccccccchhhhhhhhhcCCcccccccccccccccccchHHHHHHHHHhhcCchhhhh
Q 046513 164 REIMDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNII 243 (660)
Q Consensus 164 ~~iMd~WDrlC~~LraRkVSv~DvSkK~gmdlRLLh~Va~G~sWyG~WGY~fg~GsFgvt~~~Y~~Aie~Lss~pL~~~~ 243 (660)
.+.|.|.+||=.....+.+|..+++++-|+.-.-+..+-.|. -..+.++..+-.++| +++++.|+
T Consensus 8 ~~~~~~g~~lk~~R~~~glsq~~lA~~~gis~~~is~~E~g~--------------~~p~~~~l~~ia~~l-~v~~~~l~ 72 (126)
T 3ivp_A 8 YDFRALGLAIKEARKKQGLTREQVGAMIEIDPRYLTNIENKG--------------QHPSLQVLYDLVSLL-NVSVDEFF 72 (126)
T ss_dssp CCTHHHHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHHSC--------------CCCCHHHHHHHHHHH-TCCSHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCCHHHHHHHhCcCHHHHHHHHCCC--------------CCCCHHHHHHHHHHH-CcCHHHHh
Confidence 367899999988888899999999999998887776665543 356777777776766 57888887
Q ss_pred hcccCCcchhhHHHHHHHhhccchhhhhhHHHHHHHHHHhhc
Q 046513 244 QDFCGTDLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTVKS 285 (660)
Q Consensus 244 ~~~~~~~~~~~~~~ii~~Y~~lS~~~L~Tl~dL~~fmL~l~s 285 (660)
..-...........++..+..+++..+..+.+++..++..+.
T Consensus 73 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~i~~~i~~l~~~~~ 114 (126)
T 3ivp_A 73 LPASSQVKSTKRRQLENKIDNFTDADLVIMESVADGIVKSKE 114 (126)
T ss_dssp SCCCCCCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCccccchHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 755444344577889999999999999999999999987653
No 57
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=86.47 E-value=0.11 Score=46.42 Aligned_cols=37 Identities=24% Similarity=0.461 Sum_probs=27.2
Q ss_pred CCCceeecCCCCceecccccccCCCC--CCC-CceecCCC
Q 046513 611 DGERMVACDICEVWQHTRCHGIEDSG--TVP-PLFVCPRC 647 (660)
Q Consensus 611 DGe~MIqCD~C~vWQH~~CvgI~~~~--~~p-d~fvC~~C 647 (660)
+++.||.|+.|...+|..|+++.... .++ ..|.|+.|
T Consensus 19 ~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C 58 (114)
T 2kwj_A 19 RPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC 58 (114)
T ss_dssp CCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG
T ss_pred CCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc
Confidence 44589999999999999999986321 122 46776665
No 58
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=81.91 E-value=0.5 Score=44.46 Aligned_cols=53 Identities=19% Similarity=0.408 Sum_probs=38.1
Q ss_pred CCCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCCC-------CCCCceecCCCCCCCC
Q 046513 596 NDKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSG-------TVPPLFVCPRCCSSFA 652 (660)
Q Consensus 596 ~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~-------~~pd~fvC~~C~~~~~ 652 (660)
+|...-+| +|+ +.| -.+.||.|-.=+|..|+..+-.+ ...+.|.|+.|.....
T Consensus 59 ~Dg~~d~C~vC~---~GG-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl 119 (142)
T 2lbm_A 59 SDGMDEQCRWCA---EGG-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPL 119 (142)
T ss_dssp TTSCBCSCSSSC---CCS-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTT
T ss_pred CCCCCCeecccC---CCC-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccH
Confidence 34555556 565 455 58999999999999999954321 1247999999987543
No 59
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=79.87 E-value=0.33 Score=44.99 Aligned_cols=54 Identities=19% Similarity=0.400 Sum_probs=38.3
Q ss_pred CCCCccEEe-ecCCCCCCCCceeecCCCCceecccccccCCC-----C--CCCCceecCCCCCCCC
Q 046513 595 GNDKWIVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDS-----G--TVPPLFVCPRCCSSFA 652 (660)
Q Consensus 595 g~d~~~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~-----~--~~pd~fvC~~C~~~~~ 652 (660)
++|...-+| +|+ |.| -.+.||.|-.=+|..|+...-. . ...+.|.|..|.++.+
T Consensus 52 d~Dg~~~~C~vC~---dGG-~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 52 DSDGMDEQCRWCA---EGG-NLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CTTSCBSSCTTTC---CCS-EEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred CCCCCCCcCeecC---CCC-eeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 334455557 677 345 6899999999999999985311 1 1248999999987643
No 60
>2l7p_A Histone-lysine N-methyltransferase ASHH2; CW-domain; NMR {Arabidopsis thaliana}
Probab=70.79 E-value=1.8 Score=38.55 Aligned_cols=33 Identities=21% Similarity=0.465 Sum_probs=24.6
Q ss_pred CceeecCCCCceecccccccCCCCCCCCceecCC
Q 046513 613 ERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPR 646 (660)
Q Consensus 613 e~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~ 646 (660)
+.+||||.|..|--.. .++......|+.|+|..
T Consensus 26 ~~WVQCD~C~KWRrLP-~~~~~~~~~pd~W~C~m 58 (100)
T 2l7p_A 26 SAWVRCDDCFKWRRIP-ASVVGSIDESSRWICMN 58 (100)
T ss_dssp SEEEECTTTCCEEEEC-HHHHTTSTTSSCCCGGG
T ss_pred CeEEeeCCCCccccCC-hhHccccCCCCCceeCC
Confidence 4799999999998776 44433334579999965
No 61
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=68.21 E-value=10 Score=31.82 Aligned_cols=100 Identities=10% Similarity=0.128 Sum_probs=69.4
Q ss_pred hHHHHhhhccceeeeeeeccccccchhhhhhhhhcCCcccccccccccccccccchHHHHHHHHHhhcCchhhhhhcccC
Q 046513 169 LWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCG 248 (660)
Q Consensus 169 ~WDrlC~~LraRkVSv~DvSkK~gmdlRLLh~Va~G~sWyG~WGY~fg~GsFgvt~~~Y~~Aie~Lss~pL~~~~~~~~~ 248 (660)
|-++|=.....+.+|..+++++-|+.-.-+.-+-.|. .-..+.+...+-.++| +++++.|+..-..
T Consensus 2 ~~~~l~~~r~~~gltq~~lA~~~gis~~~i~~~e~g~-------------~~~p~~~~l~~ia~~l-~v~~~~l~~~~~~ 67 (111)
T 1b0n_A 2 IGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNL-------------QTNPSIQFLEKVSAVL-DVSVHTLLDEKHE 67 (111)
T ss_dssp CHHHHHHHHHHTTCCHHHHHHHHTCCHHHHHHHHTTC-------------CSCCCHHHHHHHHHHH-TCCHHHHHCCTTC
T ss_pred hHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC-------------CCCCCHHHHHHHHHHH-CcCHHHHhcCCCC
Confidence 3466766777788999999999999887776665540 2345566666656655 5788888754321
Q ss_pred Ccc-----hhhHHHHHHHh-hccchhhhhhHHHHHHHHHH
Q 046513 249 TDL-----CREMKQIFHHY-RDMSETLLLTLKDLLRFMLT 282 (660)
Q Consensus 249 ~~~-----~~~~~~ii~~Y-~~lS~~~L~Tl~dL~~fmL~ 282 (660)
+.. ....+.+...| +.|++.....+.+++.+|..
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~l~~e~~~~i~~~i~~l~~ 107 (111)
T 1b0n_A 68 TEYDGQLDSEWEKLVRDAMTSGVSKKQFREFLDYQKWRKS 107 (111)
T ss_dssp C-----CCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHH
T ss_pred CCCcccccHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence 111 23456677889 99999999888888888764
No 62
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=68.15 E-value=10 Score=32.26 Aligned_cols=102 Identities=12% Similarity=0.051 Sum_probs=77.7
Q ss_pred hhhHHHHhhhccceeeeeeeccccccchhhhhhhhhcCCcccccccccccccccccchHHHHHHHHHhhcCchhhhhhcc
Q 046513 167 MDLWDRICTNLRTCKVTVEDVSKKKSMDLRLLHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDF 246 (660)
Q Consensus 167 Md~WDrlC~~LraRkVSv~DvSkK~gmdlRLLh~Va~G~sWyG~WGY~fg~GsFgvt~~~Y~~Aie~Lss~pL~~~~~~~ 246 (660)
|.|.+||=.....+.+|..+++++-|+...-+..+-.|. -..+.+...+-.++| +++++.|+..-
T Consensus 8 ~~~~~~l~~~r~~~glsq~~lA~~~gis~~~i~~~e~g~--------------~~p~~~~l~~la~~l-~v~~~~l~~~~ 72 (114)
T 3op9_A 8 HQFAENLSRLKKEHGLKNHQIAELLNVQTRTVAYYMSGE--------------TKPDIEKLIRLATYF-HLSIDELVGYV 72 (114)
T ss_dssp CCHHHHHHHHHHHHTCCHHHHHHHHTSCHHHHHHHHHTS--------------SCCCHHHHHHHHHHH-TCCHHHHHTCC
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHcCC--------------CCCCHHHHHHHHHHh-CCCHHHHhcCC
Confidence 568899988888899999999999998877666555443 346667777666666 58888887654
Q ss_pred cCC--cchhhHHHHHHHhhccchhhhhhHHHHHHHHHHh
Q 046513 247 CGT--DLCREMKQIFHHYRDMSETLLLTLKDLLRFMLTV 283 (660)
Q Consensus 247 ~~~--~~~~~~~~ii~~Y~~lS~~~L~Tl~dL~~fmL~l 283 (660)
... .....++.++..+..+++..+..+.+++.++..+
T Consensus 73 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~i~~~i~~i~~~ 111 (114)
T 3op9_A 73 QEDKVWNDLSLKQWLLSLNLRSEEEIAKIKILVDTVETL 111 (114)
T ss_dssp CC--CCSCHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHH
T ss_pred CcccccCcHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 332 2235688899999999999999999998888765
No 63
>1yop_A KTI11P; zinc finger, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: g.41.17.1 PDB: 1yws_A
Probab=65.23 E-value=2 Score=37.09 Aligned_cols=37 Identities=24% Similarity=0.626 Sum_probs=28.1
Q ss_pred ccccCCCCccEEeecCCCC-------CCCCceeecCCCCceecc
Q 046513 591 RYEGGNDKWIVKCECGAQD-------DDGERMVACDICEVWQHT 627 (660)
Q Consensus 591 r~e~g~d~~~VrCiCG~~d-------DDGe~MIqCD~C~vWQH~ 627 (660)
.+..+.+.|.-.|.||... .+|+..++|+.|.-|-..
T Consensus 14 ~~de~~~~y~ypCrCGd~F~it~edL~~ge~iv~C~sCSL~I~V 57 (83)
T 1yop_A 14 TFEPENQMFTYPCPCGDRFQIYLDDMFEGEKVAVCPSCSLMIDV 57 (83)
T ss_dssp EEETTTTEEEEEETTTEEEEEEHHHHHTTCCEEECSSSCCEEEC
T ss_pred EEcCCCCEEEEeCCCCCeEEECHHHHhCCCEEEECCCCccEEEE
Confidence 3444445688999999642 478899999999999755
No 64
>2jr7_A DPH3 homolog; DESR1, CSL zinc finger, metal binding protein; NMR {Homo sapiens}
Probab=64.48 E-value=1.9 Score=37.80 Aligned_cols=39 Identities=21% Similarity=0.680 Sum_probs=29.4
Q ss_pred cccccCCCCccEEeecCCCC-------CCCCceeecCCCCceeccc
Q 046513 590 LRYEGGNDKWIVKCECGAQD-------DDGERMVACDICEVWQHTR 628 (660)
Q Consensus 590 ~r~e~g~d~~~VrCiCG~~d-------DDGe~MIqCD~C~vWQH~~ 628 (660)
+.+..+.+.|.-.|.||... .+|+..++|+.|.-|--..
T Consensus 13 m~~de~~~~y~ypCrCGd~F~IteedLe~ge~iv~C~sCSL~IkV~ 58 (89)
T 2jr7_A 13 FQYDEDSETYFYPCPCGDNFSITKEDLENGEDVATCPSCSLIIKVI 58 (89)
T ss_dssp SEEETTTTEEEEECTTSSEEEEEHHHHHHTCCEEECTTTCCEEEEE
T ss_pred cEEcCCCCEEEEcCCCCCEEEECHHHHhCCCEEEECCCCccEEEEE
Confidence 34444456788999999852 4688899999999997654
No 65
>1wge_A Hypothetical protein 2610018L09RIK; diphthamide,CSL zinc finger, ADP-ribosylating toxin, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.17.1
Probab=60.67 E-value=3.1 Score=35.94 Aligned_cols=38 Identities=21% Similarity=0.719 Sum_probs=28.7
Q ss_pred cccccCCCCccEEeecCCCC-------CCCCceeecCCCCceecc
Q 046513 590 LRYEGGNDKWIVKCECGAQD-------DDGERMVACDICEVWQHT 627 (660)
Q Consensus 590 ~r~e~g~d~~~VrCiCG~~d-------DDGe~MIqCD~C~vWQH~ 627 (660)
+.+..+...|.-.|.||-.. .+|+..++|+.|.-|-..
T Consensus 20 m~~de~~~~y~y~CrCGd~F~it~edL~~ge~iv~C~sCSL~I~V 64 (83)
T 1wge_A 20 FQYDEDSETYFYPCPCGDNFAITKEDLENGEDVATCPSCSLIIKV 64 (83)
T ss_dssp SCCBTTTTEEEECCSSSSCEEEEHHHHHTTCCEEECTTTCCEEEE
T ss_pred ceEccCCCEEEEeCCCCCEEEECHHHHhCCCEEEECCCCceEEEE
Confidence 34444445688889999862 478889999999999755
No 66
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=55.07 E-value=4.5 Score=34.75 Aligned_cols=35 Identities=23% Similarity=0.633 Sum_probs=28.0
Q ss_pred CCCccEEe-ecCCCCCCCCceeecCC--CCceeccccccc
Q 046513 596 NDKWIVKC-ECGAQDDDGERMVACDI--CEVWQHTRCHGI 632 (660)
Q Consensus 596 ~d~~~VrC-iCG~~dDDGe~MIqCD~--C~vWQH~~CvgI 632 (660)
.+.|...| +|+.+ ..| --|||.. |...+|..|...
T Consensus 13 ~~R~~l~C~iC~~~-~~G-AciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 13 PARWKLTCYLCKQK-GVG-ASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCCCCCBTTTTBC-CSS-CEEECSCTTTCCEEEHHHHHH
T ss_pred hHHhcCCCcCCCCC-CCc-EeEecCCCCCCCcCcHHHHHH
Confidence 35688899 79875 346 7999986 999999999753
No 67
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=53.81 E-value=30 Score=30.28 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=50.2
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcccCCCCCccHHHHHHHHhcccCCchhHHHHHHhc--Cccee-cCcEEEE
Q 046513 333 WSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSM--NNVIV-GSHIVHR 401 (660)
Q Consensus 333 Ws~~r~~~A~~~~v~vLr~~~a~~~~~~~wvsR~~LR~aar~~IGdtgLLD~~LK~l--~~~vv-~~~vvrr 401 (660)
++.+.++..++.+++.|.+-=.+. .-..+|+|.+||..+-+.+ ++.+.+.+|..| .|+++ .|..|+-
T Consensus 59 ~~~~~~~~l~~~l~~~L~~yH~~~-P~~~G~~keeLr~~~~~~~-~~~~~~~ll~~l~~~g~l~~~~~~v~L 128 (135)
T 2v9v_A 59 ISTERYQAWWQAVTRALEEFHSRY-PLRPGLAREELRSRYFSRL-PARVYQALLEEWSREGRLQLAANTVAL 128 (135)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHC-TTSSCEEHHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEECSSEEEE
T ss_pred ecHHHHHHHHHHHHHHHHHHHHhC-CCccCCCHHHHHHHhcccC-CHHHHHHHHHHHHHCCCEEecCCEEEC
Confidence 789999999999999996532222 1223899999999886545 899999999988 56555 3556654
No 68
>2jx3_A Protein DEK; alpha helix, SAF/SAP motif, DNA binding, chromosomal rearrangement, DNA-binding, nucleus, phosphorylation, proto oncogene; NMR {Homo sapiens}
Probab=49.23 E-value=6.8 Score=36.21 Aligned_cols=80 Identities=21% Similarity=0.269 Sum_probs=52.0
Q ss_pred ccccccchhhhhhhhhcCCccccc---------ccccccccccccchHHHHHHHHHhhcCchhhhhhcccCCcchhhHHH
Q 046513 187 VSKKKSMDLRLLHGVAYGHSWFGR---------WGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQDFCGTDLCREMKQ 257 (660)
Q Consensus 187 vSkK~gmdlRLLh~Va~G~sWyG~---------WGY~fg~GsFgvt~~~Y~~Aie~Lss~pL~~~~~~~~~~~~~~~~~~ 257 (660)
+|+..-.+|++||-|.||.+=-.. =||.|. ...+.|+++.|.|..+....+.. +-+
T Consensus 21 i~k~k~d~Lk~LH~ilfgr~Gk~~~~KknI~~FsGF~~~-----~~~~~~~k~~e~l~K~~~~~L~~----------~c~ 85 (131)
T 2jx3_A 21 LSKKKTDELRNLHKLLYNRPGTVSSLKKNVGQFSGFPFE-----KGSVQYKKKEEMLKKFRNAMLKS----------ICE 85 (131)
T ss_dssp HHTCCHHHHHHHHHHTSSSCCCSHHHHHHHHTSSCSSCC-----CSSHHHHHHHHHHHHHHHHHHHH----------HHH
T ss_pred HcccCHHHHHHHHHHHcCCCChHhHHHHHHHhcCCCCCC-----ccHHHHHHHHHHHHccCHHHHHH----------HHH
Confidence 445555679999999998753111 245554 44578999999999999888853 555
Q ss_pred HHHHhhccchhhhhhHHHHHHHHHHhhccc
Q 046513 258 IFHHYRDMSETLLLTLKDLLRFMLTVKSCA 287 (660)
Q Consensus 258 ii~~Y~~lS~~~L~Tl~dL~~fmL~l~s~~ 287 (660)
|+..=++-+ -.||..-+|++...+
T Consensus 86 iL~l~~~g~------keelv~ril~FL~~P 109 (131)
T 2jx3_A 86 VLDLERSGV------NSELVKRILNFLMHP 109 (131)
T ss_dssp TTTCCSCSC------HHHHHHHHHHTTTSC
T ss_pred HHCCCCCCc------HHHHHHHHHHHHhCc
Confidence 555444433 345666666666443
No 69
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=46.21 E-value=13 Score=33.01 Aligned_cols=21 Identities=33% Similarity=0.512 Sum_probs=18.6
Q ss_pred eeecCCCCHHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESALR 541 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~afr 541 (660)
|.|++++||.|||+..+..+.
T Consensus 22 v~V~~~~TV~dLK~~I~~~~~ 42 (105)
T 1v2y_A 22 VVVVQNATVLDLKKAIQRYVQ 42 (105)
T ss_dssp EEECTTCBHHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHhC
Confidence 678899999999999998873
No 70
>2e61_A Zinc finger CW-type PWWP domain protein 1; ZF-CW domain, structural genomics, NPPSFA, national project protein structural and functional analyses; NMR {Homo sapiens} PDB: 2rr4_A*
Probab=44.81 E-value=22 Score=29.54 Aligned_cols=31 Identities=23% Similarity=0.616 Sum_probs=22.1
Q ss_pred ceeecC--CCCceecccccccCCCCCCCCceecCC
Q 046513 614 RMVACD--ICEVWQHTRCHGIEDSGTVPPLFVCPR 646 (660)
Q Consensus 614 ~MIqCD--~C~vWQH~~CvgI~~~~~~pd~fvC~~ 646 (660)
.+|||| .|..|--.. .++.. ...|+.|+|..
T Consensus 17 ~WVQCd~p~C~KWR~LP-~~~~~-~~lpd~W~C~m 49 (69)
T 2e61_A 17 VWVQCSFPNCGKWRRLC-GNIDP-SVLPDNWSCDQ 49 (69)
T ss_dssp CEEECSSTTTCCEEECC-SSCCT-TTSCTTCCGGG
T ss_pred eEEEeCccccCcccCCc-ccccc-ccCCCcCEeCC
Confidence 799999 999998662 22222 23689999963
No 71
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=40.77 E-value=9.3 Score=33.38 Aligned_cols=50 Identities=16% Similarity=0.354 Sum_probs=35.3
Q ss_pred cEEe-ecCCCCCCCCceeecCCCCceecccccccC---CCC--------C-CCCceecCCCCCCC
Q 046513 600 IVKC-ECGAQDDDGERMVACDICEVWQHTRCHGIE---DSG--------T-VPPLFVCPRCCSSF 651 (660)
Q Consensus 600 ~VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~---~~~--------~-~pd~fvC~~C~~~~ 651 (660)
..-| +|..-. .+ -++.|..|..-+|..|..-. +.+ + ...-|.|+.|..-.
T Consensus 15 D~~C~VC~~~t-~~-~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~CenL~ 77 (89)
T 1wil_A 15 DEMCDVCEVWT-AE-SLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCDNIN 77 (89)
T ss_dssp SCCCTTTCCCC-SS-CCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTCCCC
T ss_pred CcccCcccccc-cc-ceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccchhh
Confidence 3447 688753 33 69999999999999998553 221 1 13689999997543
No 72
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=39.26 E-value=40 Score=27.86 Aligned_cols=87 Identities=13% Similarity=0.195 Sum_probs=62.1
Q ss_pred hHHHHhhhccceeeeeeeccccccchhhh----hhhhhcCCcccccccccccccccccchHHHHHHHHHhhcCchhhhhh
Q 046513 169 LWDRICTNLRTCKVTVEDVSKKKSMDLRL----LHGVAYGHSWFGRWGYKFFHGSFGVREQNYNRAIEILSSLELDNIIQ 244 (660)
Q Consensus 169 ~WDrlC~~LraRkVSv~DvSkK~gmdlRL----Lh~Va~G~sWyG~WGY~fg~GsFgvt~~~Y~~Aie~Lss~pL~~~~~ 244 (660)
|-+||-.....+.+|..+++++-|+...- +..+-.| --..+.+...+-.++| +++++.|+.
T Consensus 2 ~g~~lk~~R~~~glsq~~lA~~~gis~~~~~~~is~~E~g--------------~~~p~~~~l~~la~~l-~v~~~~l~~ 66 (98)
T 3lfp_A 2 LIRRLKDARLRAGISQEKLGVLAGIDEASASARMNQYEKG--------------KHAPDFEMANRLAKVL-KIPVSYLYT 66 (98)
T ss_dssp CHHHHHHHHHHHTCCHHHHHHHTTCCHHHHHHHHHHHHHT--------------SSCCCHHHHHHHHHHH-TSCGGGGGC
T ss_pred HHHHHHHHHHHcCCCHHHHHHHhCCCcchhhhHHHHHHCC--------------CCCCCHHHHHHHHHHH-CcCHHHHhC
Confidence 44666666667889999999999987665 5544443 3346667766666666 588888865
Q ss_pred cccCCcchhhHHHHHHHhhccchhhhhhHHHHH
Q 046513 245 DFCGTDLCREMKQIFHHYRDMSETLLLTLKDLL 277 (660)
Q Consensus 245 ~~~~~~~~~~~~~ii~~Y~~lS~~~L~Tl~dL~ 277 (660)
. . .....++..|+.|++.....+ +++
T Consensus 67 ~---~---~~~~~~~~~~~~l~~~~~~~~-~~l 92 (98)
T 3lfp_A 67 P---E---DDLAQIILTWNELNEQERKRI-NFY 92 (98)
T ss_dssp C---C---HHHHHHHHHHTTCCHHHHHHH-HHH
T ss_pred C---C---hhHHHHHHHHHhCCHHHHHHH-HHH
Confidence 2 2 268899999999999887766 544
No 73
>2hqh_E Restin; beta/BETA structure, zinc finger motif, structural protein, binding; 1.80A {Homo sapiens}
Probab=37.93 E-value=6.9 Score=27.14 Aligned_cols=13 Identities=38% Similarity=1.147 Sum_probs=9.4
Q ss_pred CCCCCCCCccccC
Q 046513 87 SPQPYCDQCRCSG 99 (660)
Q Consensus 87 s~~~~Cd~Cr~vG 99 (660)
+.+|||+.|-+.|
T Consensus 1 ~~RpYCe~CE~FG 13 (26)
T 2hqh_E 1 GSRPYCEICEMFG 13 (26)
T ss_dssp ---CEETTTTEES
T ss_pred CCCccchHHHHhC
Confidence 4689999999988
No 74
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=34.42 E-value=25 Score=25.92 Aligned_cols=46 Identities=26% Similarity=0.444 Sum_probs=32.8
Q ss_pred Ee-ecCCCCCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCC
Q 046513 602 KC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSF 651 (660)
Q Consensus 602 rC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~ 651 (660)
.| ||-...++|+..+....|+-.+|..|+.---. ....||.|+...
T Consensus 7 ~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~----~~~~CP~Cr~~~ 53 (55)
T 1iym_A 7 ECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLG----SHSTCPLCRLTV 53 (55)
T ss_dssp CCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTT----TCCSCSSSCCCS
T ss_pred cCccCCccccCCCceEECCCCCCcccHHHHHHHHH----cCCcCcCCCCEe
Confidence 47 68877777655666667999999999865422 245799997543
No 75
>1r7c_A Genome polyprotein; membrane anchor domain, HCV NS5A protein, structure, peptide, membrane protein; NMR {Synthetic} SCOP: j.35.1.1 PDB: 1r7d_A 1r7e_A 1r7f_A 1r7g_A
Probab=34.14 E-value=14 Score=26.59 Aligned_cols=17 Identities=41% Similarity=0.884 Sum_probs=13.5
Q ss_pred cccchhhhHHHHhhhcc
Q 046513 162 CGREIMDLWDRICTNLR 178 (660)
Q Consensus 162 sG~~iMd~WDrlC~~Lr 178 (660)
+|.=|-++||.+|+.|-
T Consensus 1 ~~swL~~iwdWvctvLs 17 (31)
T 1r7c_A 1 SGSWLRDIWDWICEVLS 17 (31)
T ss_dssp CCCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHH
Confidence 35567899999999874
No 76
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=33.67 E-value=26 Score=29.55 Aligned_cols=28 Identities=18% Similarity=0.209 Sum_probs=21.6
Q ss_pred eecCCCCHHHHHHHHHHHHHHHHhhhcc
Q 046513 522 MIPLHSTVLELKEAAESALRDTYCIMEN 549 (660)
Q Consensus 522 vlp~~ATv~dLK~ea~~afrDtY~~~~~ 549 (660)
-+++++||.|||...++....+|.-=|+
T Consensus 29 ~v~~~~TV~~lK~~I~~~~~~i~~~~Qr 56 (88)
T 2dzj_A 29 KVEPHATIAEIKNLFTKTHPQWYPARQS 56 (88)
T ss_dssp EECSSCBHHHHHHHHHHHCSSSCTTTCC
T ss_pred EcCCCCcHHHHHHHHHHHhcCCChHHeE
Confidence 5899999999999999866556544333
No 77
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=31.30 E-value=8.9 Score=33.77 Aligned_cols=47 Identities=30% Similarity=0.678 Sum_probs=36.4
Q ss_pred e-ecCCC---CCCCCceeecCCCCceecccccccCCCCCCCCceecCCCCCCCC
Q 046513 603 C-ECGAQ---DDDGERMVACDICEVWQHTRCHGIEDSGTVPPLFVCPRCCSSFA 652 (660)
Q Consensus 603 C-iCG~~---dDDGe~MIqCD~C~vWQH~~CvgI~~~~~~pd~fvC~~C~~~~~ 652 (660)
| |||-. ..||++.|+|..|..--=-.|+-....+ -.=.|+.|.-+-.
T Consensus 19 CqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErke---G~q~CpqCktrYk 69 (93)
T 1weo_A 19 CEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERRE---GTQNCPQCKTRYK 69 (93)
T ss_dssp CSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHT---SCSSCTTTCCCCC
T ss_pred cccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhc---cCccccccCCccc
Confidence 6 78875 5889999999999998888888776433 3447999975543
No 78
>1weq_A PHD finger protein 7; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.67 E-value=59 Score=28.15 Aligned_cols=48 Identities=23% Similarity=0.556 Sum_probs=34.9
Q ss_pred cEEeecCCC-C---CCC-CceeecCCCC-ceecccccccCCCCCCCCceecCCCCCC
Q 046513 600 IVKCECGAQ-D---DDG-ERMVACDICE-VWQHTRCHGIEDSGTVPPLFVCPRCCSS 650 (660)
Q Consensus 600 ~VrCiCG~~-d---DDG-e~MIqCD~C~-vWQH~~CvgI~~~~~~pd~fvC~~C~~~ 650 (660)
...|+|..- + ++| =.+|-|..|. .=-|..|..+.. .++.|.|..|..-
T Consensus 26 A~~Clc~~GR~~~~~~~~W~L~lC~~Cgs~gtH~~Cs~l~~---~~~~weC~~C~~v 79 (85)
T 1weq_A 26 APICLYEQGRDSFEDEGRWRLILCATCGSHGTHRDCSSLRP---NSKKWECNECLPA 79 (85)
T ss_dssp CSCCCSTTCSSCCBSSSTTBCEECSSSCCCEECSGGGTCCT---TCSCCCCTTTSCC
T ss_pred ccccCCCCCcccccCCCCEEEEeCcccCCchhHHHHhCCcC---CCCCEECCcCccc
Confidence 445777552 1 233 3688999998 678999999863 4689999999853
No 79
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=30.12 E-value=83 Score=24.49 Aligned_cols=20 Identities=45% Similarity=0.456 Sum_probs=16.8
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
+-++++.||+|||...+...
T Consensus 18 ~~v~~~~tV~~LK~~i~~~~ 37 (77)
T 2bwf_A 18 VNVAPESTVLQFKEAINKAN 37 (77)
T ss_dssp EEECTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHh
Confidence 45788999999999988754
No 80
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=29.25 E-value=21 Score=30.61 Aligned_cols=33 Identities=27% Similarity=0.591 Sum_probs=27.5
Q ss_pred EEe-ecCCCCCCCCceeecCCCCceecccccccCCC
Q 046513 601 VKC-ECGAQDDDGERMVACDICEVWQHTRCHGIEDS 635 (660)
Q Consensus 601 VrC-iCG~~dDDGe~MIqCD~C~vWQH~~CvgI~~~ 635 (660)
..| .|+.. -.| ++..|+.|+.-.|..|+..+..
T Consensus 48 ~~C~~C~~~-~~~-~~Y~C~~C~f~lH~~Ca~~p~~ 81 (89)
T 1v5n_A 48 YTCDKCEEE-GTI-WSYHCDECDFDLHAKCALNEDT 81 (89)
T ss_dssp CCCTTTSCC-CCS-CEEECTTTCCCCCHHHHHCSSC
T ss_pred eEeCCCCCc-CCC-cEEEcCCCCCeEcHHhcCCCCc
Confidence 568 68886 456 8999999999999999988754
No 81
>4eto_A Protein S100-A4; calcium-binding protein, EF-hand, structural genomics, PSI-B protein structure initiative, NEW YORK structural genomics consortium; 1.54A {Homo sapiens} PDB: 1m31_A 2q91_A 3cga_A 3ko0_A* 3m0w_A*
Probab=27.68 E-value=1e+02 Score=25.59 Aligned_cols=53 Identities=15% Similarity=0.355 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCccHHHHHHHHhcccC-------CchhHHHHHHhcC
Q 046513 337 RLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIG-------DTGLLDYVLKSMN 390 (660)
Q Consensus 337 r~~~A~~~~v~vLr~~~a~~~~~~~wvsR~~LR~aar~~IG-------dtgLLD~~LK~l~ 390 (660)
.++.+.+.+.++.+.--... +.++-||+.+||...++.+| +..-+|-+++.++
T Consensus 4 ~le~~~~~l~~~F~~fd~~d-g~~G~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~D 63 (93)
T 4eto_A 4 PLEKALDVMVSTFHKYSGKE-GDKFKLNKSELKELLTRELPSFLGKRTDEAAFQKLMSNLD 63 (93)
T ss_dssp HHHHHHHHHHHHHHHHHTSS-SSTTSBCHHHHHHHHHHHCGGGC---CCHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHcccC-CCCCeECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHHC
Confidence 47788888888887653121 21137999999999997454 4567888888773
No 82
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=25.92 E-value=44 Score=25.83 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.9
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
+-+++++||+|||...++..
T Consensus 15 i~v~~~~tv~~lK~~i~~~~ 34 (76)
T 3a9j_A 15 LEVEPSDTIENVKAKIQDKE 34 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH
Confidence 56788999999999988764
No 83
>2l6l_A DNAJ homolog subfamily C member 24; DPH4, Zn-CSL, J-domain, chaperone; NMR {Homo sapiens}
Probab=25.74 E-value=20 Score=32.98 Aligned_cols=32 Identities=25% Similarity=0.820 Sum_probs=24.0
Q ss_pred CCCCccEEeecCCCC----C---CCCceeecCCCCceecc
Q 046513 595 GNDKWIVKCECGAQD----D---DGERMVACDICEVWQHT 627 (660)
Q Consensus 595 g~d~~~VrCiCG~~d----D---DGe~MIqCD~C~vWQH~ 627 (660)
+...+...|.||... + +| ..|.|+.|..|...
T Consensus 107 ~~~~f~~~CrCG~~f~i~~~~l~~~-~~v~C~sCSl~~~v 145 (155)
T 2l6l_A 107 GDHSFYLSCRCGGKYSVSKDEAEEV-SLISCDTCSLIIEL 145 (155)
T ss_dssp TTTEEEEECSSSCEEEEETTHHHHC-CEEECSSSSCEEEE
T ss_pred CCcEEEEcCCCCCeEEecHHHhCCC-CEEECCCCceEEEE
Confidence 345788999999742 2 34 68999999999743
No 84
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=24.35 E-value=51 Score=26.18 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.9
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
|-+++++||.|||...++..
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3mtn_B 18 LEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EEECTTCBHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHH
Confidence 45788999999999998764
No 85
>1xax_A Hypothetical UPF0054 protein HI0004; structural genomics, MMP, hydrolase, protein structure initiative, S2F, structure 2 function project; NMR {Haemophilus influenzae}
Probab=24.02 E-value=18 Score=34.22 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=12.5
Q ss_pred hhcccccccCccce
Q 046513 135 ILHGLIHCNGFGHL 148 (660)
Q Consensus 135 lLHG~iH~NGfGHL 148 (660)
+.||+.|..||-|-
T Consensus 112 ~vHG~LHLlGyDH~ 125 (154)
T 1xax_A 112 VVHGSLHLLGYDHI 125 (154)
T ss_dssp HHHHHHTTTCCCCC
T ss_pred HHHHHHHhcCCCCC
Confidence 57999999999995
No 86
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=23.85 E-value=1.3e+02 Score=23.97 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=17.2
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
+-+++++||.|||...+..+
T Consensus 20 ~~v~~~~TV~~lK~~i~~~~ 39 (85)
T 2wyq_A 20 IRMEPDETVKVLKEKIEAEK 39 (85)
T ss_dssp EEECTTSBHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHhhc
Confidence 45788999999999998875
No 87
>3n22_A Protein S100-A2; EF-hand, calcium-binding, zinc-binding, tumor supressor, CAL binding protein; 1.30A {Homo sapiens} SCOP: a.39.1.2 PDB: 2rgi_A 4duq_A
Probab=23.40 E-value=1.2e+02 Score=25.58 Aligned_cols=52 Identities=19% Similarity=0.316 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHHhhhcccCCCCCccHHHHHHHHhccc----C---CchhHHHHHHhc
Q 046513 337 RLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHI----G---DTGLLDYVLKSM 389 (660)
Q Consensus 337 r~~~A~~~~v~vLr~~~a~~~~~~~wvsR~~LR~aar~~I----G---dtgLLD~~LK~l 389 (660)
.++.+.+.+.++.+.--.+.+.++ -||+.+||..+++.. | +..-+|-+++.+
T Consensus 5 ~le~~i~~l~~~F~~fd~~dgdgG-~Is~~EL~~~l~~~lg~~l~~~~~~~ev~~~i~~~ 63 (98)
T 3n22_A 5 SLEQALAVLVTTFHKYSSQEGDKF-KLSKGEMKELLHKELPSFVGEKVDEEGLKKLMGSL 63 (98)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSTT-SBCHHHHHHHHHHHCHHHHCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCCC-eECHHHHHHHHHHHhhhhccCCCCHHHHHHHHHHh
Confidence 577888888888876421211122 799999999998633 3 456788888876
No 88
>1xm5_A Hypothetical UPF0054 protein YBEY; structural genomics, protein structure initiative, nysgxrc target T842, PFAM family UPF0054, PSI; 2.70A {Escherichia coli} SCOP: d.92.1.15
Probab=22.97 E-value=17 Score=34.40 Aligned_cols=14 Identities=36% Similarity=0.959 Sum_probs=12.5
Q ss_pred hhcccccccCccce
Q 046513 135 ILHGLIHCNGFGHL 148 (660)
Q Consensus 135 lLHG~iH~NGfGHL 148 (660)
+.||+.|..||-|-
T Consensus 112 ~vHG~LHLlGyDH~ 125 (155)
T 1xm5_A 112 VVHGSLHLLGYDHI 125 (155)
T ss_dssp HHHHHHHHTTCCCS
T ss_pred HHHHHHHhcCCCCC
Confidence 57999999999994
No 89
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=22.44 E-value=48 Score=27.30 Aligned_cols=21 Identities=14% Similarity=0.219 Sum_probs=17.5
Q ss_pred eee-ecCCCCHHHHHHHHHHHH
Q 046513 520 LVM-IPLHSTVLELKEAAESAL 540 (660)
Q Consensus 520 lvv-lp~~ATv~dLK~ea~~af 540 (660)
+|. |++++||+|||...+...
T Consensus 13 ~v~~l~~~~Tv~~Lk~~I~~~~ 34 (86)
T 2kzr_A 13 LLQGLSSRTRLRELQGQIAAIT 34 (86)
T ss_dssp EECSCCTTCBHHHHHHHHHHHT
T ss_pred EeeecCCCCCHHHHHHHHHHHh
Confidence 455 889999999999988764
No 90
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=22.09 E-value=1.6e+02 Score=29.04 Aligned_cols=67 Identities=16% Similarity=0.214 Sum_probs=49.3
Q ss_pred ccHHHHHHHHHHHHHHHHHhhhcccCCCCCccHHHHHHHHhcccCCchhHHHHHHhc--Cccee-cCcEEEE
Q 046513 333 WSARRLESAAEVIVNALQEQKAENLGHGGGMSRQKLRDAARMHIGDTGLLDYVLKSM--NNVIV-GSHIVHR 401 (660)
Q Consensus 333 Ws~~r~~~A~~~~v~vLr~~~a~~~~~~~wvsR~~LR~aar~~IGdtgLLD~~LK~l--~~~vv-~~~vvrr 401 (660)
++.+.++...+.++++|.+--.+. .-...|++.+||..+-+.+ ++.|++.+|..| .|.++ .|+.|+.
T Consensus 59 ~~~~~~~~~~~~l~~~L~~~H~~~-P~~~G~~~~~L~~~~~~~~-~~~l~~~ll~~l~~~g~l~~~~~~v~l 128 (258)
T 1lva_A 59 ISTERYQAWWQAVTRALEEFHSRY-PLRPGLAREELRSRYFSRL-PARVYQALLEEWSREGRLQLAANTVAL 128 (258)
T ss_dssp EEHHHHHHHHHHHHHHHHHHHHHC-TTSSCEEHHHHHHHHCTTS-CHHHHHHHHHHHHHTTSEEEETTEEEE
T ss_pred EcHHHHHHHHHHHHHHHHHHHHhC-CCccCCCHHHHHHhccccC-CHHHHHHHHHHHHHCCCEEecCCEEeC
Confidence 689999999999999997532222 1222799999999986545 789999999988 66554 3556554
No 91
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=22.00 E-value=58 Score=25.11 Aligned_cols=20 Identities=25% Similarity=0.207 Sum_probs=16.7
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
+-+++++||.|||...++..
T Consensus 15 ~~v~~~~tv~~lK~~i~~~~ 34 (76)
T 1ndd_A 15 IDIEPTDKVERIKERVEEKE 34 (76)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCChHHHHHHHHHHHH
Confidence 45788999999999988753
No 92
>1oz9_A Hypothetical protein AQ_1354; matrix metalloproteinase type fold, structural genomics, BSG structure funded by NIH; 1.89A {Aquifex aeolicus} SCOP: d.92.1.15
Probab=21.96 E-value=18 Score=33.90 Aligned_cols=14 Identities=43% Similarity=0.971 Sum_probs=12.2
Q ss_pred hhcccccccCccce
Q 046513 135 ILHGLIHCNGFGHL 148 (660)
Q Consensus 135 lLHG~iH~NGfGHL 148 (660)
+.||+.|..||-|-
T Consensus 113 ~vHG~LHLlGyDH~ 126 (150)
T 1oz9_A 113 IVHGIVHLLGYDHE 126 (150)
T ss_dssp HHHHHHHHTTCCST
T ss_pred HHHHHHHhcCCCCC
Confidence 46899999999994
No 93
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=21.79 E-value=58 Score=25.94 Aligned_cols=20 Identities=10% Similarity=0.117 Sum_probs=16.8
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESAL 540 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~af 540 (660)
+-+++++||.|||...++..
T Consensus 18 ~~v~~~~tV~~lK~~i~~~~ 37 (85)
T 3n3k_B 18 LEVEPSDTIENVKAKIQDKE 37 (85)
T ss_dssp EECCTTCBHHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHHH
Confidence 45778999999999998764
No 94
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=21.74 E-value=56 Score=34.02 Aligned_cols=89 Identities=17% Similarity=0.305 Sum_probs=62.0
Q ss_pred cccccCccceEEeccccCCCccccccchhhhHHHHhhhccceeeeeeeccccccch------hhhhhhh-hcC------C
Q 046513 139 LIHCNGFGHLLSINGIEGGSGYLCGREIMDLWDRICTNLRTCKVTVEDVSKKKSMD------LRLLHGV-AYG------H 205 (660)
Q Consensus 139 ~iH~NGfGHLl~vNGrEgGS~~LsG~~iMd~WDrlC~~LraRkVSv~DvSkK~gmd------lRLLh~V-a~G------~ 205 (660)
.++.+|.|-|+.+.|++|--+ |.+| .+|...|..|.+.|.=+..=-+-| -|..... +.| .
T Consensus 79 ~~~~~~~~vlIvfEG~DgAGK---gt~I----k~L~e~Ldprg~~V~~~~~Pt~eE~~~~yl~R~~~~LP~~G~IvIfDR 151 (304)
T 3czq_A 79 WMQATGKRVMAVFEGRDAAGK---GGAI----HATTANMNPRSARVVALTKPTETERGQWYFQRYVATFPTAGEFVLFDR 151 (304)
T ss_dssp HHHHHCCCEEEEEEESTTSSH---HHHH----HHHHTTSCTTTEEEEECCSCCHHHHTSCTTHHHHTTCCCTTCEEEEEE
T ss_pred HHHHcCCCeEEEEeCCCCCCH---HHHH----HHHHHHhcccCCeEEEeCCcChHHHhchHHHHHHHhcccCCeEEEEEC
Confidence 344568999999999998766 4444 577888888877776555443333 2333333 555 5
Q ss_pred cccccccccccccccccchHHHHHHHHHhhc
Q 046513 206 SWFGRWGYKFFHGSFGVREQNYNRAIEILSS 236 (660)
Q Consensus 206 sWyG~WGY~fg~GsFgvt~~~Y~~Aie~Lss 236 (660)
+||++-+|.-..| +++.+.|+++++.|..
T Consensus 152 swYs~v~~~rv~g--~~~~~e~~~~~~~In~ 180 (304)
T 3czq_A 152 SWYNRAGVEPVMG--FCTPDQYEQFLKEAPR 180 (304)
T ss_dssp CGGGGTTHHHHHT--SSCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHhc--CCCHHHHHHHHHHHHH
Confidence 9999999987665 4568888888887644
No 95
>2e2z_A TIM15; protein import, zinc finger, protein transport, chaperone regulator; NMR {Saccharomyces cerevisiae}
Probab=21.29 E-value=22 Score=31.74 Aligned_cols=26 Identities=23% Similarity=0.799 Sum_probs=20.4
Q ss_pred cEEe-ecCCC---------CCCCCceeecCCCCcee
Q 046513 600 IVKC-ECGAQ---------DDDGERMVACDICEVWQ 625 (660)
Q Consensus 600 ~VrC-iCG~~---------dDDGe~MIqCD~C~vWQ 625 (660)
.+.| +|+.. +..|-..|+|+.|+.|.
T Consensus 13 ~FTC~~C~tRs~k~iSk~aY~~GvViv~C~gC~n~H 48 (100)
T 2e2z_A 13 AFTCKKCNTRSSHTMSKQAYEKGTVLISCPHCKVRH 48 (100)
T ss_dssp EEEETTTTEEEEEEEEHHHHHTSEEEEECTTTCCEE
T ss_pred EEEccCCCCcchhhcCHHHhhCCEEEEEcCCCccce
Confidence 4567 67763 57898999999999985
No 96
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.14 E-value=59 Score=25.64 Aligned_cols=19 Identities=21% Similarity=0.300 Sum_probs=16.4
Q ss_pred eeecCCCCHHHHHHHHHHH
Q 046513 521 VMIPLHSTVLELKEAAESA 539 (660)
Q Consensus 521 vvlp~~ATv~dLK~ea~~a 539 (660)
+-+++++||+|||...++.
T Consensus 22 ~~v~~~~tV~~LK~~i~~~ 40 (81)
T 2dzi_A 22 LQVPEDELVSTLKQLVSEK 40 (81)
T ss_dssp EEECSSCBHHHHHHHHHHH
T ss_pred EEECCCCcHHHHHHHHHHH
Confidence 5678999999999998875
No 97
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=20.34 E-value=54 Score=28.59 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=35.7
Q ss_pred HHHHHHH--hhcCchhhhhhcccCCc---chhhHHHHHHHhhccch-hhhhhHHHHHHHH
Q 046513 227 YNRAIEI--LSSLELDNIIQDFCGTD---LCREMKQIFHHYRDMSE-TLLLTLKDLLRFM 280 (660)
Q Consensus 227 Y~~Aie~--Lss~pL~~~~~~~~~~~---~~~~~~~ii~~Y~~lS~-~~L~Tl~dL~~fm 280 (660)
+++|-|. |-...++.|++.-.+.- .++.++.|+++|+..++ ++=.|-.|++.++
T Consensus 28 ~KKA~ELsvLCda~Valiifs~~gk~~~f~s~~~~~il~rY~~~~~~~~~~~~~d~~e~~ 87 (90)
T 3p57_A 28 MKKAYELSVLCDCEIALIIFNSSNKLFQYASTDMDKVLLKYTEYNEPHESRTNSDIVEAL 87 (90)
T ss_dssp HHHHHHHHHHHTCEEEEEEECTTCCEEEEESSCHHHHHHHHHHCCSCCCEECHHHHHHHH
T ss_pred HHHHHHHHhccCCceEEEEECCCCCEEEeCCCCHHHHHHHHHhcCcccccCChHhHHHHH
Confidence 5667665 88888888875432210 02479999999999886 3445556666543
Done!