BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046517
(142 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3H8E|A Chain A, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8E|B Chain B, Low Ph Native Structure Of Leucine Aminopeptidase From
Pseud Putida
pdb|3H8F|A Chain A, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|B Chain B, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|C Chain C, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|D Chain D, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|E Chain E, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8F|F Chain F, High Ph Native Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|F Chain F, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|A Chain A, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|B Chain B, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|C Chain C, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|D Chain D, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
pdb|3H8G|E Chain E, Bestatin Complex Structure Of Leucine Aminopeptidase From
Pseudomonas Putida
Length = 497
Score = 29.3 bits (64), Expect = 0.79, Method: Composition-based stats.
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 7 LVVSESGQSRVEEVGKHVIMRRTGLP-ARDLMVLDPLLSYPS 47
L+ ++GQ+ VE KH TG+ RDL L P L +PS
Sbjct: 159 LLADKAGQAEVERAVKHASAIATGMAFTRDLGNLPPNLCHPS 200
>pdb|4A5O|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|C Chain C, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
pdb|4A5O|D Chain D, Crystal Structure Of Pseudomonas Aeruginosa N5, N10-
Methylenetetrahydrofolate Dehydrogenase-Cyclohydrolase
(Fold)
Length = 286
Score = 27.3 bits (59), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 27/46 (58%)
Query: 35 DLMVLDPLLSYPSSILGRDRAIEVLMLYSTNPLVVQFVQDLQHFIS 80
DL +D ++ S+I+GR A+E+L+ T + +F +DL +S
Sbjct: 158 DLYGMDAVVVGASNIVGRPMALELLLGGCTVTVTHRFTRDLADHVS 203
>pdb|1B0A|A Chain A, 5,10, Methylene-Tetrahydropholate
DehydrogenaseCYCLOHYDROLASE FROM E COLI
Length = 288
Score = 27.3 bits (59), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 12/47 (25%), Positives = 28/47 (59%)
Query: 35 DLMVLDPLLSYPSSILGRDRAIEVLMLYSTNPLVVQFVQDLQHFISS 81
D L+ ++ S+I+GR ++E+L+ T + +F ++L+H + +
Sbjct: 156 DTFGLNAVVIGASNIVGRPMSMELLLAGCTTTVTHRFTKNLRHHVEN 202
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 26.2 bits (56), Expect = 6.9, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 62 YSTNPLVVQFVQDLQHFISSLQALSTQQ 89
YS N ++ Q+LQHF SSL L+ Q
Sbjct: 549 YSLNHIMTSKKQELQHFPSSLAFLNLTQ 576
>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|B Chain B, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|C Chain C, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
pdb|4G2N|D Chain D, Crystal Structure Of Putative D-Isomer Specific
2-Hydroxyacid Dehydrogenase, Nad-Binding From
Polaromonas Sp. Js6 66
Length = 345
Score = 26.2 bits (56), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 46 PSSILGRDRAIEVLMLYSTNPLVVQFVQDLQHFISSLQALS 86
PS I R EVL + +T + + ++ LQ + ++ LS
Sbjct: 62 PSGIASRAHGAEVLFVTATEAITAEVIRKLQPGLKTIATLS 102
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 26.2 bits (56), Expect = 7.2, Method: Composition-based stats.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 62 YSTNPLVVQFVQDLQHFISSLQALSTQQ 89
YS N ++ Q+LQHF SSL L+ Q
Sbjct: 525 YSLNHIMTSKKQELQHFPSSLAFLNLTQ 552
>pdb|4GF0|A Chain A, Crystal Structure Of Glutahtione Transferase Homolog From
Sulfitobacter, Target Efi-501084, With Bound Glutathione
pdb|4GF0|B Chain B, Crystal Structure Of Glutahtione Transferase Homolog From
Sulfitobacter, Target Efi-501084, With Bound Glutathione
Length = 215
Score = 25.8 bits (55), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 86 STQQVILSDMTSDLVNYELRKDDAPETSVVAGPKVLAFEFRALESCLESACGCLDSE 142
+ QQ DMT+ + D E+ ++ GP VL +F + L C LD +
Sbjct: 120 AKQQSSFEDMTAQVPETMAACADFVESDILRGPYVLGEDFSLADPYLFVVCNWLDGD 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,657
Number of Sequences: 62578
Number of extensions: 115865
Number of successful extensions: 248
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 238
Number of HSP's gapped (non-prelim): 11
length of query: 142
length of database: 14,973,337
effective HSP length: 89
effective length of query: 53
effective length of database: 9,403,895
effective search space: 498406435
effective search space used: 498406435
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)