Query 046517
Match_columns 142
No_of_seqs 116 out of 219
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:55:51 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046517.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046517hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2662 Magnesium transporters 100.0 5E-38 1.1E-42 268.8 8.8 120 1-142 62-195 (414)
2 PF02426 MIase: Muconolactone 69.9 7.9 0.00017 27.3 3.7 47 3-49 41-91 (91)
3 PF04379 DUF525: Protein of un 45.7 23 0.0005 24.7 2.7 17 3-19 32-48 (90)
4 PRK05461 apaG CO2+/MG2+ efflux 37.1 36 0.00078 25.3 2.7 17 3-19 49-65 (127)
5 PF07013 DUF1314: Protein of u 35.9 19 0.0004 28.5 1.0 42 2-43 57-108 (177)
6 TIGR03221 muco_delta muconolac 34.2 68 0.0015 22.7 3.6 47 3-49 40-90 (90)
7 PHA03371 circ protein; Provisi 32.7 22 0.00048 29.4 1.0 42 2-43 80-131 (240)
8 cd01806 Nedd8 Nebb8-like ubiq 31.6 91 0.002 19.6 3.7 30 10-39 7-44 (76)
9 COG1410 MetH Methionine syntha 29.3 41 0.00088 32.4 2.3 39 3-42 149-193 (842)
10 COG2967 ApaG Uncharacterized p 26.8 71 0.0015 24.0 2.8 17 3-19 48-64 (126)
11 CHL00159 rpl13 ribosomal prote 26.2 38 0.00082 25.8 1.3 14 3-16 13-26 (143)
12 TIGR01066 rplM_bact ribosomal 24.3 45 0.00099 25.2 1.4 14 3-16 10-23 (140)
13 COG0102 RplM Ribosomal protein 24.3 47 0.001 25.6 1.5 13 3-15 12-24 (148)
14 KOG0006 E3 ubiquitin-protein l 23.5 80 0.0017 27.7 2.9 33 7-39 5-47 (446)
15 PRK09216 rplM 50S ribosomal pr 22.9 48 0.001 25.3 1.3 14 3-16 12-25 (144)
16 cd01210 EPS8 Epidermal growth 22.3 1.3E+02 0.0028 22.6 3.5 50 31-80 48-124 (127)
17 PLN00205 ribisomal protein L13 20.2 62 0.0013 25.9 1.5 15 2-16 13-27 (191)
No 1
>KOG2662 consensus Magnesium transporters: CorA family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=5e-38 Score=268.76 Aligned_cols=120 Identities=50% Similarity=0.739 Sum_probs=103.4
Q ss_pred CCceEEEEEcCCCCeeEEEecHHHHHHHhCCCCCcccccCCCCCCCceeeeeCCeE--------------EEEEecCCCc
Q 046517 1 MGLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLMVLDPLLSYPSSILGRDRAI--------------EVLMLYSTNP 66 (142)
Q Consensus 1 ~~~r~W~~~D~~G~~~~~e~~K~~lm~r~gL~aRDLR~LDp~ls~pssIL~Re~AI--------------eVLl~d~~~~ 66 (142)
.++|+|++||++|++++.+++|++||+|+||+|||||++||+++||++||+||+|| +|+|||+.++
T Consensus 62 ~~~~sw~~~D~tGn~~~~e~dK~~i~~r~~L~aRDLR~ldp~~~~~ssIl~RE~aIVlNLe~IKAIItaeeVll~d~~~~ 141 (414)
T KOG2662|consen 62 SGSRSWTRFDATGNSTVLEVDKYTIMKRVGLPARDLRKLDPSLSYPSSILGRENAIVLNLEHIKAIITADEVLLLDSLDP 141 (414)
T ss_pred CcceEEEEEcCCCCeeeccccHHHHHHHcCCChhhhhhccccccCccccccccceEEeehhhhheeeehhheeEeccccc
Confidence 37899999999999999999999999999999999999999999999999999999 8999999999
Q ss_pred hHHHHHHHHHHhhhhhhcchhhhhhhccccccchhhccccCCCCCCcccCCCCCCcchHHHHHHHHHHHhccccCC
Q 046517 67 LVVQFVQDLQHFISSLQALSTQQVILSDMTSDLVNYELRKDDAPETSVVAGPKVLAFEFRALESCLESACGCLDSE 142 (142)
Q Consensus 67 ~v~~Fv~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~LPFEFraLE~~Le~vcs~Le~E 142 (142)
|.++..++++||.. .+.+. ..+.++ ..+..+.|||||||||+|||++|++||++
T Consensus 142 -v~~~~~el~~~l~~-~~~~~-----~~q~s~---------------~~~~~~~lPFEFrALE~aLe~~~s~L~~~ 195 (414)
T KOG2662|consen 142 -VIPYNEELQRRLPV-ELESR-----GNQLSS---------------DGGSKDELPFEFRALEVALEAACSFLDSR 195 (414)
T ss_pred -cchHHHHHHHHhcc-ccccc-----ccccCC---------------CCCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999982 32210 001110 11236899999999999999999999974
No 2
>PF02426 MIase: Muconolactone delta-isomerase; InterPro: IPR003464 This small enzyme forms a homodecameric complex, that catalyses the third step in the catabolism of catechol to succinate- and acetyl-coa in the beta-ketoadipate pathway (5.3.3.4 from EC). The protein has a ferredoxin-like fold according to SCOP.; GO: 0006725 cellular aromatic compound metabolic process
Probab=69.92 E-value=7.9 Score=27.35 Aligned_cols=47 Identities=26% Similarity=0.404 Sum_probs=37.4
Q ss_pred ceEEEEEcCCCCeeEEEecHHHHHHH--hCCCCCcccccC--CCCCCCcee
Q 046517 3 LRTWLVVSESGQSRVEEVGKHVIMRR--TGLPARDLMVLD--PLLSYPSSI 49 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e~~K~~lm~r--~gL~aRDLR~LD--p~ls~pssI 49 (142)
.+.|-+....|+..++++.=.+=+++ .+||...-..++ |+-.|||+|
T Consensus 41 ~~lWr~~G~~~n~~Ifdv~d~~eLh~lL~sLPL~p~m~i~VtpL~~Hps~~ 91 (91)
T PF02426_consen 41 RHLWRVVGRYANVSIFDVEDNDELHELLSSLPLFPYMDIEVTPLARHPSDI 91 (91)
T ss_pred eEEEEecCCcceEEEEECCCHHHHHHHHHhCCCccceeeeEEecccCCCCC
Confidence 36799999999999998876555554 689999888776 677999886
No 3
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=45.65 E-value=23 Score=24.73 Aligned_cols=17 Identities=24% Similarity=0.597 Sum_probs=13.9
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
.|.|...|.+|+.+.++
T Consensus 32 sR~W~I~d~~g~~~~V~ 48 (90)
T PF04379_consen 32 SRHWIITDADGHVEEVE 48 (90)
T ss_dssp EEEEEEEETTS-EEEEE
T ss_pred ccEEEEEeCCCCEEEEE
Confidence 59999999999888664
No 4
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=37.10 E-value=36 Score=25.30 Aligned_cols=17 Identities=24% Similarity=0.593 Sum_probs=14.6
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
.|.|+..|++|+.+.++
T Consensus 49 ~R~W~I~d~~g~~~~V~ 65 (127)
T PRK05461 49 SRHWLITDANGRVQEVR 65 (127)
T ss_pred eeeEEEEECCCCEEEEE
Confidence 59999999999887664
No 5
>PF07013 DUF1314: Protein of unknown function (DUF1314); InterPro: IPR010741 This family consists of several alphaherpesvirus proteins of around 200 residues in length. They belong to the varicellovirus ORF2 family and their function is unknown.
Probab=35.89 E-value=19 Score=28.51 Aligned_cols=42 Identities=29% Similarity=0.397 Sum_probs=30.8
Q ss_pred CceEEEEEcC-CCCeeEEE---------ecHHHHHHHhCCCCCcccccCCCC
Q 046517 2 GLRTWLVVSE-SGQSRVEE---------VGKHVIMRRTGLPARDLMVLDPLL 43 (142)
Q Consensus 2 ~~r~W~~~D~-~G~~~~~e---------~~K~~lm~r~gL~aRDLR~LDp~l 43 (142)
..|+++.+-. +|++--.| -.=|++++.+||+-|||-++|-.+
T Consensus 57 ~~RkF~iy~~~~~~vyGyE~~tgLH~La~sLhdfL~~~GlSqRDl~v~~~~~ 108 (177)
T PF07013_consen 57 SCRKFVIYLSRNGSVYGYENGTGLHFLAKSLHDFLTTKGLSQRDLMVWDGTF 108 (177)
T ss_pred CCceEEEEEccCCeEEeecCCcchhhhhHHHHHHHHHcCcccccEEEEeeeE
Confidence 4577777665 44444444 235899999999999999999765
No 6
>TIGR03221 muco_delta muconolactone delta-isomerase. Members of this protein family are muconolactone delta-isomerase (EC 5.3.3.4), the CatC protein of the ortho cleavage pathway for metabolizing aromatic compounds by way of catechol.
Probab=34.21 E-value=68 Score=22.72 Aligned_cols=47 Identities=30% Similarity=0.446 Sum_probs=36.7
Q ss_pred ceEEEEEcCCCCeeEEEecHHHHHHH--hCCCCCcccccC--CCCCCCcee
Q 046517 3 LRTWLVVSESGQSRVEEVGKHVIMRR--TGLPARDLMVLD--PLLSYPSSI 49 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e~~K~~lm~r--~gL~aRDLR~LD--p~ls~pssI 49 (142)
.+.|=+...-+|..++++.-++=+++ .+||..--+.|+ |+-.|||+|
T Consensus 40 ~~lWRv~G~~~n~sifdv~s~~eLh~iL~sLPL~p~m~i~VtpL~~HPs~~ 90 (90)
T TIGR03221 40 RHLWRVAGEYANYSIFDVESNDELHTLLSGLPLFPYMDIEVTPLARHPSSI 90 (90)
T ss_pred EEEEEecCCceeEEEEEcCCHHHHHHHHHhCCCCcceEeEEEEccCCCCCC
Confidence 47788888888888998887666665 799998888777 666888876
No 7
>PHA03371 circ protein; Provisional
Probab=32.68 E-value=22 Score=29.39 Aligned_cols=42 Identities=29% Similarity=0.394 Sum_probs=30.9
Q ss_pred CceEEEEEcC-CCCeeEEE---------ecHHHHHHHhCCCCCcccccCCCC
Q 046517 2 GLRTWLVVSE-SGQSRVEE---------VGKHVIMRRTGLPARDLMVLDPLL 43 (142)
Q Consensus 2 ~~r~W~~~D~-~G~~~~~e---------~~K~~lm~r~gL~aRDLR~LDp~l 43 (142)
..|+++.+-. +|++--.| -.=|++++.+||+-|||-++|-.+
T Consensus 80 ~~RkF~iyl~r~~sVyGYE~gtGLH~LA~sLhdFL~~~GLSqRDl~v~d~~~ 131 (240)
T PHA03371 80 SGRKFVIYLSRNGSVYGYENGTGLHFLAKSLHDFLTTKGLSQRDLMVVDGTF 131 (240)
T ss_pred CCceEEEEEccCCeEEeecCCcchhhhHHHHHHHHHhcCccccceEEEeeee
Confidence 3577777655 44544444 235899999999999999999765
No 8
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=31.61 E-value=91 Score=19.61 Aligned_cols=30 Identities=13% Similarity=0.370 Sum_probs=21.7
Q ss_pred cCCCCeeEEEec--------HHHHHHHhCCCCCccccc
Q 046517 10 SESGQSRVEEVG--------KHVIMRRTGLPARDLMVL 39 (142)
Q Consensus 10 D~~G~~~~~e~~--------K~~lm~r~gL~aRDLR~L 39 (142)
+.+|....++++ |..|..+.|+|+.+.|++
T Consensus 7 ~~~g~~~~~~v~~~~tv~~lK~~i~~~~g~~~~~qrL~ 44 (76)
T cd01806 7 TLTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLI 44 (76)
T ss_pred eCCCCEEEEEECCCCCHHHHHHHHhHhhCCChhhEEEE
Confidence 345655544433 788999999999999965
No 9
>COG1410 MetH Methionine synthase I, cobalamin-binding domain [Amino acid transport and metabolism]
Probab=29.27 E-value=41 Score=32.42 Aligned_cols=39 Identities=26% Similarity=0.554 Sum_probs=29.3
Q ss_pred ceEEEEEcCCCCeeEEE-----ecHHH-HHHHhCCCCCcccccCCC
Q 046517 3 LRTWLVVSESGQSRVEE-----VGKHV-IMRRTGLPARDLMVLDPL 42 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e-----~~K~~-lm~r~gL~aRDLR~LDp~ 42 (142)
..-.|-||++|.....+ ++|.- ++.++|+||.|+ ++||.
T Consensus 149 aVVvma~DE~GqA~t~eRK~eIakR~y~l~~~~gfpp~dI-IfDPn 193 (842)
T COG1410 149 AVVVMTIDEEGQARTAERKFEIAKRAYILTEEVGFPPEDI-IFDPN 193 (842)
T ss_pred cEEEEeeccccccccHHHHHHHHHHHHHHHHhcCCCchhe-eeccc
Confidence 44568899999888653 33333 777899999998 78885
No 10
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=26.77 E-value=71 Score=23.96 Aligned_cols=17 Identities=29% Similarity=0.575 Sum_probs=14.8
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|-|+..|.+|+...++
T Consensus 48 sR~W~ITd~~g~v~eV~ 64 (126)
T COG2967 48 SRYWLITDGNGRVTEVE 64 (126)
T ss_pred eeEEEEecCCCcEEEEE
Confidence 58999999999988764
No 11
>CHL00159 rpl13 ribosomal protein L13; Validated
Probab=26.15 E-value=38 Score=25.83 Aligned_cols=14 Identities=21% Similarity=0.593 Sum_probs=12.0
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
.|.|.++|+.|+.-
T Consensus 13 ~r~W~viDA~~~~l 26 (143)
T CHL00159 13 NRKWYIIDAKDQTL 26 (143)
T ss_pred CCCEEEEeCCCCch
Confidence 48999999999764
No 12
>TIGR01066 rplM_bact ribosomal protein L13, bacterial type. This model distinguishes ribosomal protein L13 of bacteria and organelles from its eukarytotic and archaeal counterparts.
Probab=24.31 E-value=45 Score=25.24 Aligned_cols=14 Identities=36% Similarity=0.779 Sum_probs=11.9
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
.|.|.+||+.|+.-
T Consensus 10 ~r~W~viDA~~~~l 23 (140)
T TIGR01066 10 KRKWYVVDAAGKTL 23 (140)
T ss_pred cccEEEEeCCCCch
Confidence 58999999998763
No 13
>COG0102 RplM Ribosomal protein L13 [Translation, ribosomal structure and biogenesis]
Probab=24.28 E-value=47 Score=25.58 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=11.3
Q ss_pred ceEEEEEcCCCCe
Q 046517 3 LRTWLVVSESGQS 15 (142)
Q Consensus 3 ~r~W~~~D~~G~~ 15 (142)
.|.|.++|+.|..
T Consensus 12 ~r~w~vIDA~g~v 24 (148)
T COG0102 12 ERKWYVIDAEGKV 24 (148)
T ss_pred cceEEEEeCCCCC
Confidence 5899999999954
No 14
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=23.53 E-value=80 Score=27.75 Aligned_cols=33 Identities=36% Similarity=0.605 Sum_probs=24.0
Q ss_pred EEEcCCCCeeE--EEec--------HHHHHHHhCCCCCccccc
Q 046517 7 LVVSESGQSRV--EEVG--------KHVIMRRTGLPARDLMVL 39 (142)
Q Consensus 7 ~~~D~~G~~~~--~e~~--------K~~lm~r~gL~aRDLR~L 39 (142)
+.|..+|.+.. ++++ |-.+.++.||||-|||+|
T Consensus 5 vqf~~~~~~h~l~v~v~~~t~I~~lke~Vak~~gvp~D~L~vi 47 (446)
T KOG0006|consen 5 VQFNKTGSSHGLPVEVDSDTSIFQLKEVVAKRQGVPADQLRVI 47 (446)
T ss_pred EEeCCccccCceeEEEecCCCHHHHHHHHHHhhCCChhheEEE
Confidence 45666776552 2332 677888999999999987
No 15
>PRK09216 rplM 50S ribosomal protein L13; Reviewed
Probab=22.93 E-value=48 Score=25.27 Aligned_cols=14 Identities=29% Similarity=0.674 Sum_probs=11.8
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
.|.|.+||+.|+.-
T Consensus 12 ~~~W~viDA~~~~l 25 (144)
T PRK09216 12 ERKWYVIDAEGKVL 25 (144)
T ss_pred CCCEEEEeCCCCch
Confidence 48899999999764
No 16
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=22.27 E-value=1.3e+02 Score=22.57 Aligned_cols=50 Identities=26% Similarity=0.313 Sum_probs=32.7
Q ss_pred CCCCcccccCCCC-----CCCceeeeeCCeE----------------------EEEEecCCCchHHHHHHHHHHhhh
Q 046517 31 LPARDLMVLDPLL-----SYPSSILGRDRAI----------------------EVLMLYSTNPLVVQFVQDLQHFIS 80 (142)
Q Consensus 31 L~aRDLR~LDp~l-----s~pssIL~Re~AI----------------------eVLl~d~~~~~v~~Fv~~L~~rL~ 80 (142)
+..+.++++|+-. +||.+...+-+|. ++.+|.-..-.....+++|+.-+.
T Consensus 48 v~~~~v~LlD~etk~elE~fpl~~I~~~~a~~~~~~ynslL~~vvq~~~~~~~e~hlFQc~~v~A~~i~~DL~~a~~ 124 (127)
T cd01210 48 VRYQWVTLLDYETKEELESYPLSLIQEPTAFTSMELYNSILLFVVQEPGGSRTEMHIFQCQRVGAEHLVEDLQQALS 124 (127)
T ss_pred EcCCeEEEEcCCCcChhhcCCHhhccccceecCCCCcCceEEEEEeCCCCCCCcEEEEEeccccHHHHHHHHHHHHh
Confidence 4667788999854 7887677777776 455554444445666777776553
No 17
>PLN00205 ribisomal protein L13 family protein; Provisional
Probab=20.20 E-value=62 Score=25.92 Aligned_cols=15 Identities=27% Similarity=0.326 Sum_probs=12.4
Q ss_pred CceEEEEEcCCCCee
Q 046517 2 GLRTWLVVSESGQSR 16 (142)
Q Consensus 2 ~~r~W~~~D~~G~~~ 16 (142)
..|.|.+||++|+.-
T Consensus 13 ~~r~W~VIDA~~~iL 27 (191)
T PLN00205 13 EGLRWRVFDAKGQVL 27 (191)
T ss_pred CCCcEEEEeCCCCch
Confidence 468999999999764
Done!