Query 046517
Match_columns 142
No_of_seqs 116 out of 219
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 22:50:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rkg_A Magnesium transporter M 100.0 7.4E-35 2.5E-39 238.0 11.4 104 5-142 18-142 (261)
2 2f1e_A Protein APAG; APAG prot 39.0 21 0.00073 25.4 2.8 17 3-19 49-65 (127)
3 1xvs_A Protein APAG; MCSG APC2 38.5 22 0.00077 25.3 2.9 17 3-19 48-64 (126)
4 1tza_A APAG protein, SOR45; st 37.8 23 0.00078 25.6 2.8 17 3-19 48-64 (134)
5 1xq4_A Protein APAG; all beta 37.1 25 0.00087 25.5 3.0 17 3-19 53-69 (139)
6 2zkr_j 60S ribosomal protein L 33.5 11 0.00036 29.3 0.4 15 1-15 1-15 (203)
7 3r8s_J 50S ribosomal protein L 30.6 19 0.00065 26.3 1.4 13 3-15 12-24 (142)
8 3w1s_C Ubiquitin-like protein 30.2 55 0.0019 21.9 3.6 34 46-80 6-47 (91)
9 3v2d_N 50S ribosomal protein L 29.6 19 0.00067 26.2 1.3 14 3-16 10-23 (140)
10 2exn_A Hypothetical protein BO 28.5 20 0.0007 25.3 1.2 13 3-15 24-36 (136)
11 2ftc_H L13MT, MRP-L13, 39S rib 26.3 26 0.00087 25.8 1.4 13 3-15 15-27 (148)
12 4fgq_A Periplasmic protein; DU 23.1 9.4 0.00032 29.4 -1.5 28 11-38 82-109 (193)
13 3f3b_A Phage-like element PBSX 22.4 16 0.00056 26.3 -0.3 17 27-46 24-40 (126)
14 2zjr_G 50S ribosomal protein L 22.3 32 0.0011 26.0 1.4 14 3-16 38-51 (174)
No 1
>3rkg_A Magnesium transporter MRS2, mitochondrial; matrix located domain, hydrophobic GATE magnesium binding site, metal transport; 1.28A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.4e-35 Score=238.02 Aligned_cols=104 Identities=24% Similarity=0.305 Sum_probs=94.2
Q ss_pred EEEEEcCCCCeeEEE--ecHHHHHHHhCCCCCcccccCCCC-CCCceeeeeCCeE--------------EEEEecCCCch
Q 046517 5 TWLVVSESGQSRVEE--VGKHVIMRRTGLPARDLMVLDPLL-SYPSSILGRDRAI--------------EVLMLYSTNPL 67 (142)
Q Consensus 5 ~W~~~D~~G~~~~~e--~~K~~lm~r~gL~aRDLR~LDp~l-s~pssIL~Re~AI--------------eVLl~d~~~~~ 67 (142)
.|++||++|+++.++ ++|++||+++||+|||||+|||.+ +++||||+|++|| +|||||+.++.
T Consensus 18 ~ct~fD~~G~~~~~~~~~~K~~l~~~~~L~~RDLR~ld~~~~~~~PsIl~R~~aIlvnL~~irAII~~d~Vllfd~~~~~ 97 (261)
T 3rkg_A 18 SCTVFNSKGNIISMSEKFPKWSFLTEHSLFPRDLRKIDNSSIDIIPTIMCKPNCIVINLLHIKALIERDKVYVFDTTNPS 97 (261)
T ss_dssp EEEEECTTSCEEEEEEEEEHHHHHHHTTCCGGGGGGTSSCCSSCCCEEEECSSCEEEEETTEEEEECSSCEEEECCSCHH
T ss_pred EEEEECCCCCEEEecccccHHHHHHHcCCChhhHHHhcccccCCCceEEecCCeEEEechhceEEEEcceEEEEcCCCch
Confidence 699999999999876 999999999999999999999986 6778899999999 99999999987
Q ss_pred HH----HHHHHHHHhhhhhhcchhhhhhhccccccchhhccccCCCCCCcccCCCCCCcchHHHHHHHHHHHhccccCC
Q 046517 68 VV----QFVQDLQHFISSLQALSTQQVILSDMTSDLVNYELRKDDAPETSVVAGPKVLAFEFRALESCLESACGCLDSE 142 (142)
Q Consensus 68 v~----~Fv~~L~~rL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~LPFEFraLE~~Le~vcs~Le~E 142 (142)
+. .|+++|+.||.+ + ..+.+||||||||+||++||++||+|
T Consensus 98 ~~~~~~~f~~~l~~~l~~-~---------------------------------~~~~lPFEfraLEa~L~~v~~~Le~e 142 (261)
T 3rkg_A 98 AAAKLSVLMYDLESKLSS-T---------------------------------KNNSQFYEHRALESIFINVMSALETD 142 (261)
T ss_dssp HHHHHHHHHHHHHHHHHC-S---------------------------------SCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHhcc-C---------------------------------CCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 76 599999999981 1 13579999999999999999999975
No 2
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=39.04 E-value=21 Score=25.43 Aligned_cols=17 Identities=18% Similarity=0.565 Sum_probs=14.7
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|++|+.+.++
T Consensus 49 sRhW~Itd~~g~~~eV~ 65 (127)
T 2f1e_A 49 ARHWQITDGNGRTEQVD 65 (127)
T ss_dssp EEEEEEEETTSCEEEEE
T ss_pred eceEEEEeCCCCEEEEE
Confidence 59999999999988664
No 3
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=38.53 E-value=22 Score=25.30 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=14.7
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|++|+.+.++
T Consensus 48 sRhW~Itd~~g~~~eV~ 64 (126)
T 1xvs_A 48 SRRWLITDADGKQTVVE 64 (126)
T ss_dssp EEEEEEEETTCCEEEEE
T ss_pred ecEEEEEeCCCCEEEEE
Confidence 59999999999988664
No 4
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=37.82 E-value=23 Score=25.60 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.7
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|++|..+.++
T Consensus 48 sRhW~Itd~~g~~~eV~ 64 (134)
T 1tza_A 48 TRHWIITDANGKTSEVQ 64 (134)
T ss_dssp EEEEEEEETTSCEEEEE
T ss_pred ecEEEEEeCCCCEEEEE
Confidence 59999999999988664
No 5
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=37.08 E-value=25 Score=25.51 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=14.7
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|++|..+.++
T Consensus 53 sRhW~ItD~~G~~~eV~ 69 (139)
T 1xq4_A 53 SRHWIITDGEERVQEVR 69 (139)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred ecEEEEEeCCCCEEEEE
Confidence 59999999999988664
No 6
>2zkr_j 60S ribosomal protein L13A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=33.46 E-value=11 Score=29.35 Aligned_cols=15 Identities=27% Similarity=0.264 Sum_probs=7.9
Q ss_pred CCceEEEEEcCCCCe
Q 046517 1 MGLRTWLVVSESGQS 15 (142)
Q Consensus 1 ~~~r~W~~~D~~G~~ 15 (142)
|+.|.|.+||++|..
T Consensus 1 ~~~r~w~VIDA~g~~ 15 (203)
T 2zkr_j 1 MAEVQVLVLDGRGHL 15 (203)
T ss_dssp ------CEEECTTBB
T ss_pred CCCccEEEEeCCCCc
Confidence 567999999999865
No 7
>3r8s_J 50S ribosomal protein L13; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 1p85_H 1p86_H 1vs8_J 1vs6_J 2aw4_J 2awb_J 2gya_H 2gyc_H 1vt2_J 2i2v_J 2i2t_J* 2qao_J* 2qba_J* 2qbc_J* 2qbe_J 2qbg_J 2qbi_J* 2qbk_J* 2qov_J 2qox_J ...
Probab=30.63 E-value=19 Score=26.35 Aligned_cols=13 Identities=38% Similarity=0.902 Sum_probs=11.6
Q ss_pred ceEEEEEcCCCCe
Q 046517 3 LRTWLVVSESGQS 15 (142)
Q Consensus 3 ~r~W~~~D~~G~~ 15 (142)
.|.|.++|+.|..
T Consensus 12 ~r~W~viDA~g~~ 24 (142)
T 3r8s_J 12 KRDWYVVDATGKT 24 (142)
T ss_dssp CCCEEEEECTTCB
T ss_pred cCcEEEEeCCCCc
Confidence 5899999999976
No 8
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=30.20 E-value=55 Score=21.93 Aligned_cols=34 Identities=15% Similarity=0.055 Sum_probs=25.8
Q ss_pred CceeeeeCCeE--------EEEEecCCCchHHHHHHHHHHhhh
Q 046517 46 PSSILGRDRAI--------EVLMLYSTNPLVVQFVQDLQHFIS 80 (142)
Q Consensus 46 pssIL~Re~AI--------eVLl~d~~~~~v~~Fv~~L~~rL~ 80 (142)
+..|.+|=++| .+++. |.+..+..|+.-|++||.
T Consensus 6 ~~Kv~vrfk~~g~~P~l~k~KflV-~~~~t~~~~v~~lRkrL~ 47 (91)
T 3w1s_C 6 IQKIQIKFQPIGSIGQLKPSVCKI-SMSQSFAMVILFLKRRLK 47 (91)
T ss_dssp CCEEEEEEEECCC-------EEEE-ETTSBHHHHHHHHHHHHT
T ss_pred CCeEEEEEEecCCCCcccccEEEc-CCCCCHHHHHHHHHHhhC
Confidence 34678887777 55666 456789999999999998
No 9
>3v2d_N 50S ribosomal protein L13; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_M 2hgj_M 2hgu_M 2j03_N 2jl6_N 2jl8_N 2v47_N 2v49_N 2wdi_N 2wdj_N 2wdl_N 2wdn_N 2wh2_N 2wh4_N 2wrj_N 2wrl_N 2wro_N 2wrr_N 2x9s_N 2x9u_N ...
Probab=29.60 E-value=19 Score=26.24 Aligned_cols=14 Identities=14% Similarity=0.598 Sum_probs=11.9
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
.|.|.++|+.|..-
T Consensus 10 ~r~w~viDA~~~~L 23 (140)
T 3v2d_N 10 EPRWVLIDAEGKTL 23 (140)
T ss_dssp CCCEEEEECSSSBT
T ss_pred cceEEEEeCCCCch
Confidence 58999999999763
No 10
>2exn_A Hypothetical protein BOR11; beta barrel containing fold, autostructure, autoassign, structure, structural genomics, PSI; NMR {Bordetella bronchiseptica} SCOP: b.165.1.1
Probab=28.54 E-value=20 Score=25.29 Aligned_cols=13 Identities=38% Similarity=0.853 Sum_probs=11.2
Q ss_pred ceEEEEEcCCCCe
Q 046517 3 LRTWLVVSESGQS 15 (142)
Q Consensus 3 ~r~W~~~D~~G~~ 15 (142)
=|.||++|.+|+.
T Consensus 24 DR~wmlvd~~G~~ 36 (136)
T 2exn_A 24 QKRWLVANDAGQW 36 (136)
T ss_dssp CCSEEEEETTSCE
T ss_pred CCcEEEEeCCCCE
Confidence 3899999999965
No 11
>2ftc_H L13MT, MRP-L13, 39S ribosomal protein L13, mitochondrial; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus}
Probab=26.28 E-value=26 Score=25.81 Aligned_cols=13 Identities=23% Similarity=0.516 Sum_probs=11.4
Q ss_pred ceEEEEEcCCCCe
Q 046517 3 LRTWLVVSESGQS 15 (142)
Q Consensus 3 ~r~W~~~D~~G~~ 15 (142)
.|.|.++|+.|..
T Consensus 15 ~r~w~viDA~g~~ 27 (148)
T 2ftc_H 15 ARIWYLLDGKMQP 27 (148)
T ss_pred cCcEEEEeCCCCc
Confidence 5899999999965
No 12
>4fgq_A Periplasmic protein; DUF920, protease, calcium binding, hydrolase; 1.65A {Legionella pneumophila subsp} PDB: 4fgo_A 4fgp_A
Probab=23.11 E-value=9.4 Score=29.42 Aligned_cols=28 Identities=18% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCCCeeEEEecHHHHHHHhCCCCCcccc
Q 046517 11 ESGQSRVEEVGKHVIMRRTGLPARDLMV 38 (142)
Q Consensus 11 ~~G~~~~~e~~K~~lm~r~gL~aRDLR~ 38 (142)
..|.|+-.-+-|+..+.+.|+|+.+||+
T Consensus 82 g~GDCEDyaI~K~~~L~~~G~p~~~Lri 109 (193)
T 4fgq_A 82 GGGDCEDFAIIKYFTLVAVGVPSDQLRI 109 (193)
T ss_dssp TEECHHHHHHHHHHHHHHHTCCGGGEEE
T ss_pred CCcCcHHHHHHHHHHHHHcCCCHHHeEE
Confidence 3577887788899999999999999994
No 13
>3f3b_A Phage-like element PBSX protein XKDH; NESG X-RAY SR362 P54328 structure, structural genomics, PSI- 2, protein structure initiative; 2.50A {Bacillus subtilis}
Probab=22.39 E-value=16 Score=26.27 Aligned_cols=17 Identities=53% Similarity=1.040 Sum_probs=14.7
Q ss_pred HHhCCCCCcccccCCCCCCC
Q 046517 27 RRTGLPARDLMVLDPLLSYP 46 (142)
Q Consensus 27 ~r~gL~aRDLR~LDp~ls~p 46 (142)
-++|+|+.||. |.+|||
T Consensus 24 gkfGIP~e~lq---p~~sYp 40 (126)
T 3f3b_A 24 GRFGIPADRLQ---PVISYP 40 (126)
T ss_dssp BTTTBCCCTTS---CEEECC
T ss_pred cccCCChhhcC---cccccC
Confidence 47999999998 888886
No 14
>2zjr_G 50S ribosomal protein L13; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: c.21.1.1 PDB: 1nwx_H* 1nwy_H* 1sm1_H* 1xbp_H* 2zjp_G* 2zjq_G 1nkw_H 3cf5_G* 3dll_G* 3pio_G* 3pip_G* 1pnu_H 1pny_H 1vor_K 1vou_K 1vow_K 1voy_K 1vp0_K
Probab=22.34 E-value=32 Score=26.01 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.9
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
.|.|.++|+.|..-
T Consensus 38 ~r~W~vIDA~g~~L 51 (174)
T 2zjr_G 38 EQNWVVVDASGVPL 51 (174)
T ss_dssp CCCEEEEECTTSBH
T ss_pred cccEEEEeCCCCch
Confidence 58999999999763
Done!