Query 046517
Match_columns 142
No_of_seqs 116 out of 219
Neff 5.7
Searched_HMMs 13730
Date Mon Mar 25 22:50:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046517.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046517hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2exna1 b.165.1.1 (A:1-128) Hy 46.1 3.4 0.00025 27.5 1.2 13 4-16 25-37 (128)
2 d1xq4a_ b.1.23.1 (A:) ApaG {Bo 42.3 9 0.00066 25.6 3.0 17 3-19 47-63 (123)
3 d1tzaa_ b.1.23.1 (A:) ApaG {Sh 40.1 9.3 0.00068 25.8 2.8 17 3-19 46-62 (132)
4 d1xvsa_ b.1.23.1 (A:) ApaG {Vi 34.9 13 0.00096 24.7 2.9 17 3-19 48-64 (124)
5 d2zjrg1 c.21.1.1 (G:30-171) Ri 31.7 8 0.00058 26.5 1.3 14 3-16 9-22 (142)
6 d1y7ma2 d.7.1.1 (A:1-48) Hypot 28.1 23 0.0016 19.2 2.7 23 22-44 12-34 (48)
7 d1m94a_ d.15.1.1 (A:) Ubiquiti 26.0 44 0.0032 19.2 4.0 31 8-38 6-44 (73)
8 d1uh6a_ d.15.1.1 (A:) Ubiquiti 23.2 52 0.0038 20.5 4.2 33 6-38 31-71 (100)
9 d2j01n1 c.21.1.1 (N:1-139) Rib 22.3 10 0.00073 25.9 0.3 13 3-15 10-22 (139)
10 d1j72a3 d.109.1.1 (A:241-347) 20.9 14 0.001 23.0 0.8 40 2-41 7-46 (107)
11 d2d28c1 d.52.10.1 (C:1-149) Ty 20.1 49 0.0036 21.1 3.7 47 24-70 57-120 (149)
No 1
>d2exna1 b.165.1.1 (A:1-128) Hypothetical protein BB0938 {Bordetella bronchiseptica [TaxId: 518]}
Probab=46.09 E-value=3.4 Score=27.47 Aligned_cols=13 Identities=38% Similarity=0.838 Sum_probs=11.3
Q ss_pred eEEEEEcCCCCee
Q 046517 4 RTWLVVSESGQSR 16 (142)
Q Consensus 4 r~W~~~D~~G~~~ 16 (142)
|.||++|++|+..
T Consensus 25 R~wmlvd~~G~fl 37 (128)
T d2exna1 25 KRWLVANDAGQWL 37 (128)
T ss_dssp CSEEEEETTSCEE
T ss_pred eeEEEECCCCCEE
Confidence 8899999999764
No 2
>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}
Probab=42.30 E-value=9 Score=25.56 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=14.8
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|..+|.+|+.+.++
T Consensus 47 sR~W~I~d~~g~~~eV~ 63 (123)
T d1xq4a_ 47 SRHWIITDGEERVQEVR 63 (123)
T ss_dssp EEEEEEECTTSCEEEEE
T ss_pred eeeEEEEeCCCCEEEcc
Confidence 69999999999988764
No 3
>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}
Probab=40.11 E-value=9.3 Score=25.84 Aligned_cols=17 Identities=18% Similarity=0.626 Sum_probs=14.8
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|.+|+.+.++
T Consensus 46 sR~W~I~d~~G~~~eV~ 62 (132)
T d1tzaa_ 46 TRHWIITDANGKTSEVQ 62 (132)
T ss_dssp EEEEEEEETTSCEEEEE
T ss_pred eeEEEEECCCCCEEEEe
Confidence 59999999999887665
No 4
>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}
Probab=34.88 E-value=13 Score=24.72 Aligned_cols=17 Identities=35% Similarity=0.743 Sum_probs=15.0
Q ss_pred ceEEEEEcCCCCeeEEE
Q 046517 3 LRTWLVVSESGQSRVEE 19 (142)
Q Consensus 3 ~r~W~~~D~~G~~~~~e 19 (142)
+|.|...|.+|+.+.++
T Consensus 48 sR~W~I~d~~g~~~~V~ 64 (124)
T d1xvsa_ 48 SRRWLITDADGKQTVVE 64 (124)
T ss_dssp EEEEEEEETTCCEEEEE
T ss_pred eeEEEEEeCCCCEEEec
Confidence 59999999999888765
No 5
>d2zjrg1 c.21.1.1 (G:30-171) Ribosomal protein L13 {Deinococcus radiodurans [TaxId: 1299]}
Probab=31.75 E-value=8 Score=26.50 Aligned_cols=14 Identities=36% Similarity=0.667 Sum_probs=11.8
Q ss_pred ceEEEEEcCCCCee
Q 046517 3 LRTWLVVSESGQSR 16 (142)
Q Consensus 3 ~r~W~~~D~~G~~~ 16 (142)
-|.|.++|++|..-
T Consensus 9 ~r~W~viDA~~~~l 22 (142)
T d2zjrg1 9 EQNWVVVDASGVPL 22 (142)
T ss_dssp CCCEEEEECTTSBH
T ss_pred CccEEEEECCCCch
Confidence 37899999999864
No 6
>d1y7ma2 d.7.1.1 (A:1-48) Hypothetical protein YkuD, N-terminal domain {Bacillus subtilis [TaxId: 1423]}
Probab=28.12 E-value=23 Score=19.24 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=19.8
Q ss_pred HHHHHHHhCCCCCcccccCCCCC
Q 046517 22 KHVIMRRTGLPARDLMVLDPLLS 44 (142)
Q Consensus 22 K~~lm~r~gL~aRDLR~LDp~ls 44 (142)
=..|.+++|++..||+.+.|..+
T Consensus 12 L~~IA~~y~v~~~~i~~~N~~~~ 34 (48)
T d1y7ma2 12 LNSIAADFRISTAALLQANPSLQ 34 (48)
T ss_dssp HHHHHHHTTSCCCCCCCTSCTTC
T ss_pred HHHHHHHhCCCHHHHHHHcCCCC
Confidence 36799999999999999999643
No 7
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=25.97 E-value=44 Score=19.23 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=23.9
Q ss_pred EEcCCCCeeEEEec--------HHHHHHHhCCCCCcccc
Q 046517 8 VVSESGQSRVEEVG--------KHVIMRRTGLPARDLMV 38 (142)
Q Consensus 8 ~~D~~G~~~~~e~~--------K~~lm~r~gL~aRDLR~ 38 (142)
+-+.+|+...+++. |..|..+.|+|+-+.|+
T Consensus 6 vk~~~Gk~~~v~V~~~~tV~~lK~~I~~~~~i~~~~q~L 44 (73)
T d1m94a_ 6 VNDRLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVL 44 (73)
T ss_dssp EEETTTEEEEEEECTTSBHHHHHHHHHHHHCCTTTSEEE
T ss_pred EECCCCCEEEEEECCcCcHHHHHHHHHHhhcccccEEEE
Confidence 44566776666544 88999999999999984
No 8
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=23.17 E-value=52 Score=20.48 Aligned_cols=33 Identities=15% Similarity=0.202 Sum_probs=26.5
Q ss_pred EEEEcCCCCeeEEEec--------HHHHHHHhCCCCCcccc
Q 046517 6 WLVVSESGQSRVEEVG--------KHVIMRRTGLPARDLMV 38 (142)
Q Consensus 6 W~~~D~~G~~~~~e~~--------K~~lm~r~gL~aRDLR~ 38 (142)
..+-|.+|+...+++. |..|..+.|+|+...|+
T Consensus 31 V~V~~~~Gk~~~v~V~p~~TV~~LK~~I~~~~gip~~~qrL 71 (100)
T d1uh6a_ 31 VVCNDRLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVL 71 (100)
T ss_dssp EEEECSSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEE
T ss_pred EEEECCCCCEEEEEECCcChHHHHHHHHHHHHCCCcceEEE
Confidence 3456778988777654 89999999999999994
No 9
>d2j01n1 c.21.1.1 (N:1-139) Ribosomal protein L13 {Thermus thermophilus [TaxId: 274]}
Probab=22.27 E-value=10 Score=25.85 Aligned_cols=13 Identities=15% Similarity=0.700 Sum_probs=11.2
Q ss_pred ceEEEEEcCCCCe
Q 046517 3 LRTWLVVSESGQS 15 (142)
Q Consensus 3 ~r~W~~~D~~G~~ 15 (142)
-|.|.+||++|..
T Consensus 10 ~r~W~viDA~~~~ 22 (139)
T d2j01n1 10 EPRWVLIDAEGKT 22 (139)
T ss_dssp CCCCCEECCTTSB
T ss_pred cceEEEEeCCCCc
Confidence 4789999999975
No 10
>d1j72a3 d.109.1.1 (A:241-347) Macrophage capping protein Cap G {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.95 E-value=14 Score=22.99 Aligned_cols=40 Identities=23% Similarity=0.235 Sum_probs=28.1
Q ss_pred CceEEEEEcCCCCeeEEEecHHHHHHHhCCCCCcccccCC
Q 046517 2 GLRTWLVVSESGQSRVEEVGKHVIMRRTGLPARDLMVLDP 41 (142)
Q Consensus 2 ~~r~W~~~D~~G~~~~~e~~K~~lm~r~gL~aRDLR~LDp 41 (142)
+.|.+.+-|.+|...+.++.+..-+.+..|...|.=|||-
T Consensus 7 ~~~Ly~vs~~~G~~~~~~v~~~~p~~~~~L~s~dvfILD~ 46 (107)
T d1j72a3 7 AAALYKVSDATGQMNLTKVADSSPFALELLISDDCFVLDN 46 (107)
T ss_dssp CCEEEEEECTTSSCEEEEEECSSSBCGGGCCTTSEEEEEC
T ss_pred CCEEEEEECCCCCEEEEEEecCCccCHHHCCCCCEEEEec
Confidence 4688888899999988877554434555677777666653
No 11
>d2d28c1 d.52.10.1 (C:1-149) Type II secretion ATPase XpsE {Xanthomonas campestris [TaxId: 339]}
Probab=20.11 E-value=49 Score=21.14 Aligned_cols=47 Identities=13% Similarity=0.134 Sum_probs=30.0
Q ss_pred HHHHHhCCCCCcccccCCC-------C-CCCceeeeeCCeE---------EEEEecCCCchHHH
Q 046517 24 VIMRRTGLPARDLMVLDPL-------L-SYPSSILGRDRAI---------EVLMLYSTNPLVVQ 70 (142)
Q Consensus 24 ~lm~r~gL~aRDLR~LDp~-------l-s~pssIL~Re~AI---------eVLl~d~~~~~v~~ 70 (142)
.+.+.+|+|--|+.-+++. + ..|..++-|.+++ .|.+-||.|.....
T Consensus 57 ~la~~~g~p~vdl~~~~~~~~~~~~~~~~l~~~~~~~~~vlPl~~~~~~l~VA~~dP~d~~~~~ 120 (149)
T d2d28c1 57 TCAEVLGLPLVDARQLGDTPPEMLPEVQGLSLRFLKQFHLCPVGERDGRLDLWIADPYDDYAID 120 (149)
T ss_dssp HHHHHHTCCBCCGGGSCSSCCCC--CCCSCCHHHHHHHTEEEEEEETTEEEEEESCTTCHHHHH
T ss_pred HHHHHhccchhhhhhccCCcHHHHhHhhcCCHHHHHHhceeeeEEECCEEEEEEeCCCCHHHHH
Confidence 3455799999999865331 1 2455555555665 67777888765543
Done!