BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046518
         (94 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2RKN|A Chain A, X-Ray Structure Of The Self-Defense And Signaling
          Protein Dir1 From Arabidopsis Taliana
          Length = 77

 Score = 77.4 bits (189), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 37/74 (50%), Positives = 46/74 (62%)

Query: 21 ICNMTGAGLMACKPSVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAM 80
          +C M+   L  CKP+V+  NPT P+  CCTAL HAD  C C YKNS  L S G+DP+LA 
Sbjct: 4  LCGMSQDELNECKPAVSKENPTSPSQPCCTALQHADFACLCGYKNSPWLGSFGVDPELAS 63

Query: 81 QLPDKCKLPHPANC 94
           LP +C L +   C
Sbjct: 64 ALPKQCGLANAPTC 77


>pdb|4GIQ|R Chain R, Crystal Structure Of Mouse Rank Bound To Rankl
          Length = 174

 Score = 28.5 bits (62), Expect = 0.91,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 35  SVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAMQ 81
           +V P N T P    CTA  H + +C C  +N++  P  G    L + 
Sbjct: 71  AVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLN 117


>pdb|3ME2|R Chain R, Crystal Structure Of Mouse Rankl-Rank Complex
 pdb|3ME4|A Chain A, Crystal Structure Of Mouse Rank
 pdb|3ME4|B Chain B, Crystal Structure Of Mouse Rank
          Length = 216

 Score = 28.5 bits (62), Expect = 0.96,   Method: Compositional matrix adjust.
 Identities = 15/46 (32%), Positives = 22/46 (47%)

Query: 35  SVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAM 80
           +V P N T P    CTA  H + +C C  +N++  P  G    L +
Sbjct: 99  AVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQL 144


>pdb|3QBQ|B Chain B, Crystal Structure Of Extracellular Domains Of Mouse
           Rank-Rankl Complex
 pdb|3QBQ|D Chain D, Crystal Structure Of Extracellular Domains Of Mouse
           Rank-Rankl Complex
          Length = 170

 Score = 28.5 bits (62), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 22/47 (46%)

Query: 35  SVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAMQ 81
           +V P N T P    CTA  H + +C C  +N++  P  G    L + 
Sbjct: 70  AVDPGNHTAPRRCACTAGYHWNSDCECCRRNTECAPGFGAQHPLQLN 116


>pdb|1L6H|A Chain A, Solution Structure Of Plant Nsltp2 Purified From Rice
          (Oryza Sativa)
          Length = 69

 Score = 25.8 bits (55), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 11/21 (52%), Positives = 15/21 (71%), Gaps = 1/21 (4%)

Query: 43 RPTTACCTALSHADLECFCKY 63
          RPT ACC++L  A   CFC++
Sbjct: 20 RPTAACCSSL-RAQQGCFCQF 39


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.134    0.453 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,682,536
Number of Sequences: 62578
Number of extensions: 90490
Number of successful extensions: 135
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 130
Number of HSP's gapped (non-prelim): 7
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 45 (21.9 bits)