Query 046518
Match_columns 94
No_of_seqs 118 out of 1010
Neff 7.3
Searched_HMMs 46136
Date Fri Mar 29 12:56:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046518.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046518hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd04660 nsLTP_like nsLTP_like: 99.7 1E-18 2.2E-23 104.6 3.7 69 22-92 1-70 (73)
2 PF14368 LTP_2: Probable lipid 99.7 8.4E-19 1.8E-23 108.4 -0.4 79 14-94 14-96 (96)
3 cd01959 nsLTP2 nsLTP2: Non-spe 99.7 8.1E-17 1.8E-21 95.0 3.5 64 26-94 3-66 (66)
4 cd01960 nsLTP1 nsLTP1: Non-spe 99.6 1.4E-16 3.1E-21 98.2 2.0 70 20-91 1-79 (89)
5 cd00010 AAI_LTSS AAI_LTSS: Alp 99.5 3.4E-15 7.5E-20 86.3 2.4 59 29-88 1-63 (63)
6 smart00499 AAI Plant lipid tra 99.3 1E-12 2.2E-17 77.3 3.6 73 22-94 1-79 (79)
7 PF00234 Tryp_alpha_amyl: Prot 99.0 1.5E-12 3.2E-17 79.8 -7.9 71 22-94 8-90 (90)
8 PF14547 Hydrophob_seed: Hydro 94.4 0.012 2.6E-07 36.2 0.1 72 22-93 2-81 (85)
9 cd01958 HPS_like HPS_like: Hyd 93.9 0.065 1.4E-06 33.0 2.7 72 21-93 3-82 (85)
10 cd00261 AAI_SS AAI_SS: Alpha-A 87.9 0.22 4.8E-06 31.1 0.7 68 27-94 13-108 (110)
11 PF05617 Prolamin_like: Prolam 58.0 5.3 0.00012 22.8 0.9 21 42-62 26-46 (70)
12 PF15240 Pro-rich: Proline-ric 33.3 37 0.00079 23.7 2.0 16 1-16 1-17 (179)
13 PF07172 GRP: Glycine rich pro 27.2 26 0.00057 21.7 0.5 8 3-10 9-16 (95)
14 PRK10040 hypothetical protein; 25.3 80 0.0017 17.5 2.1 20 15-34 14-33 (52)
No 1
>cd04660 nsLTP_like nsLTP_like: Non-specific lipid-transfer protein (nsLTP)-like subfamily; composed of predominantly uncharacterized proteins with similarity to nsLTPs, including Medicago truncatula MtN5, the root-specific Phaseolus vulgaris PVR3, Antirrhinum majus FIL1, and Lilium longiflorum LIM3. Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. The MtN5 gene is induced during root nodule development. FIL1 is thought to be important in petal and stamen formation. The LIM3 gene is induced during the early prophase stage of meiosis in lily microsporocytes.
Probab=99.75 E-value=1e-18 Score=104.61 Aligned_cols=69 Identities=52% Similarity=0.982 Sum_probs=58.7
Q ss_pred cccccccccCcccccCCCCC-CCCCHhHHHHHhcCCccccceeccCCCCCCCCCCHHHHhhhhccCCCCCCC
Q 046518 22 CNMTGAGLMACKPSVTPPNP-TRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAMQLPDKCKLPHPA 92 (94)
Q Consensus 22 C~~~~~~l~~C~~yv~g~~~-~~Ps~~CC~~v~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cgv~~p~ 92 (94)
|+.++..|++|++|++++++ .+||+.||+++|++++.|+|.+++.... ..||.++|.+||++||+++|+
T Consensus 1 C~~~~~~L~~C~~yl~~~~~~~~Ps~~CC~~vk~~~~~C~C~~~~~~~~--~~i~~~~a~~Lp~~Cgv~~p~ 70 (73)
T cd04660 1 CNMDLDLLAECQPYVTGPNPPPPPSRECCAALRRADLPCLCRYKTSLVL--QIIDPDKAVYLPAKCGLPLPP 70 (73)
T ss_pred CCCCHHHHHHHHHHHcCCCCCCCCCHHHHHHHHcCCcCCEeeccCCCcc--cccCHHHHHHHHHHcCCCCCC
Confidence 66777889999999997653 4699999999999999999998775322 259999999999999999986
No 2
>PF14368 LTP_2: Probable lipid transfer; PDB: 2RKN_A 1N89_A 1TUK_A.
Probab=99.71 E-value=8.4e-19 Score=108.44 Aligned_cols=79 Identities=33% Similarity=0.621 Sum_probs=49.6
Q ss_pred ccCCcCcCcccccccccCcccccCCCCCCCCCHhHHHHHhcC---CccccceeccCCCCCCCCCCHHHHhhhhccCCCCC
Q 046518 14 SHAQGTVICNMTGAGLMACKPSVTPPNPTRPTTACCTALSHA---DLECFCKYKNSKLLPSLGIDPKLAMQLPDKCKLPH 90 (94)
Q Consensus 14 ~~a~~~~~C~~~~~~l~~C~~yv~g~~~~~Ps~~CC~~v~~~---~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cgv~~ 90 (94)
.++....+|.+++....+|..|+.++ .+||++||+++|++ |+.|+|+++++.....++||.+|+.+||++||++.
T Consensus 14 ~~~~~~~~c~~~l~~c~~~~~~~~~~--~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cg~~~ 91 (96)
T PF14368_consen 14 PAAACCCSCANSLLPCCPCLCYVTGG--PAPSAACCSALKSVVQADPPCLCQLLNSPGAPGFGINVTRALALPAACGVPV 91 (96)
T ss_dssp ----BTTB-HCCCCHH--HHHHHCC-------HHHHHHHCC----HCCHHHCCCC-CCHCHHCCTCHHHHHHHHHCTSS-
T ss_pred cCCCCcchhHHHHhccccchhccCCC--CCCCHHHHHHHHHhccCCCCCHHHhcCccccccCCcCHHHHHHHHHHcCCCC
Confidence 33445567854444334447888743 47999999999996 89999999886443456899999999999999999
Q ss_pred CC-CC
Q 046518 91 PA-NC 94 (94)
Q Consensus 91 p~-~c 94 (94)
|+ .|
T Consensus 92 ~~~~C 96 (96)
T PF14368_consen 92 PPSKC 96 (96)
T ss_dssp S----
T ss_pred CCCCC
Confidence 87 45
No 3
>cd01959 nsLTP2 nsLTP2: Non-specific lipid-transfer protein type 2 (nsLTP2) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. nsLTP2 can bind lipids and sterols. Structure studies of rice nsLTPs show that the plasticity of the hydrophobic cavity is an important factor in ligand binding. The flexibility of the sLTP2 cavity allows its binding to rigid sterol molecules, whereas nsLTP1 cannot bind sterols despite its larger cavity size. The resulting nsLTP2/sterol complexes may bind to receptors that trigger defense responses. nsLTP2 gene exp
Probab=99.65 E-value=8.1e-17 Score=94.96 Aligned_cols=64 Identities=28% Similarity=0.703 Sum_probs=55.0
Q ss_pred cccccCcccccCCCCCCCCCHhHHHHHhcCCccccceeccCCCCCCCCCCHHHHhhhhccCCCCCCCCC
Q 046518 26 GAGLMACKPSVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPSLGIDPKLAMQLPDKCKLPHPANC 94 (94)
Q Consensus 26 ~~~l~~C~~yv~g~~~~~Ps~~CC~~v~~~~~~ClC~~~~~~~~~~~~in~~~a~~Lp~~Cgv~~p~~c 94 (94)
..+|++|++|++++ .+||.+||+.+|+.+ .|+|+|++++.+++ .||.++|.+|+++||+++| +|
T Consensus 3 ~~~L~~C~~ai~~~--~~Ps~~CC~~Lk~~~-~CLC~y~~~p~l~~-~i~~~~A~~l~~~Cgv~~P-~C 66 (66)
T cd01959 3 PTQLSPCLPAILGG--SPPSAACCAKLKEQQ-SCLCQYAKNPSLKQ-YVNSPNARKVLAACGVPYP-NC 66 (66)
T ss_pred hhhcccCHHHHhCC--CCCCHHHHHHHhcCC-CCeeeeecCccHHh-hcCcHHHHHHHHHcCCCCC-CC
Confidence 45789999999865 379999999999966 99999998766665 4999999999999999997 54
No 4
>cd01960 nsLTP1 nsLTP1: Non-specific lipid-transfer protein type 1 (nsLTP1) subfamily; Plant nsLTPs are small, soluble proteins that facilitate the transfer of fatty acids, phospholipids, glycolipids, and steroids between membranes. In addition to lipid transport and assembly, nsLTPs also play a key role in the defense of plants against pathogens. There are two closely-related types of nsLTPs, types 1 and 2, which differ in protein sequence, molecular weight, and biological properties. nsLTPs contain an internal hydrophobic cavity, which serves as the binding site for lipids. The hydrophobic cavity accommodates various fatty acid ligands containing from ten to 18 carbon atoms. In general, the cavity is larger in nsLTP1 than in nsLTP2. nsLTP1 proteins are located in extracellular layers and in vacuolar structures. They may be involved in the formation of cutin layers on plant surfaces by transporting cutin monomers. Many nsLTP1 proteins have been characterized as allergens in humans.
Probab=99.62 E-value=1.4e-16 Score=98.23 Aligned_cols=70 Identities=27% Similarity=0.581 Sum_probs=57.6
Q ss_pred cCcccccccccCcccccCCCCCCCCCHhHHHHHhcC--------CccccceeccCCCCCCC-CCCHHHHhhhhccCCCCC
Q 046518 20 VICNMTGAGLMACKPSVTPPNPTRPTTACCTALSHA--------DLECFCKYKNSKLLPSL-GIDPKLAMQLPDKCKLPH 90 (94)
Q Consensus 20 ~~C~~~~~~l~~C~~yv~g~~~~~Ps~~CC~~v~~~--------~~~ClC~~~~~~~~~~~-~in~~~a~~Lp~~Cgv~~ 90 (94)
.+|.++...|+||++|++|++ ..|+++||++++++ |+.|+|..+... ...+ +||.+|+++||++||+++
T Consensus 1 ~~C~~v~~~l~~C~~y~~g~~-~~Ps~~CC~~v~~l~~~~~t~~~~~~~C~C~~~~-~~~~~~i~~~~a~~LP~~C~v~~ 78 (89)
T cd01960 1 ISCGQVTSLLAPCLGYLTGGG-PAPSPACCSGVKSLNGLAKTTADRQAACNCLKSA-AAGISGLNPGRAAGLPGKCGVSI 78 (89)
T ss_pred CCHHHHHhhHHhHHHHHhCCC-CCCChHHhhhhHHHhhccCCCCchhhhhhccccc-ccccCCCCHHHHHhChHhcccCC
Confidence 368889999999999999876 57999999999986 356788766542 3344 499999999999999997
Q ss_pred C
Q 046518 91 P 91 (94)
Q Consensus 91 p 91 (94)
|
T Consensus 79 ~ 79 (89)
T cd01960 79 P 79 (89)
T ss_pred C
Confidence 6
No 5
>cd00010 AAI_LTSS AAI_LTSS: Alpha-Amylase Inhibitors (AAI), Lipid Transfer (LT) and Seed Storage (SS) Protein family; a protein family unique to higher plants that includes cereal-type alpha-amylase inhibitors, lipid transfer proteins, seed storage proteins, and similar proteins. Proteins in this family are known to play important roles, in defending plants from insects and pathogens, lipid transport between intracellular membranes, and nutrient storage. Many proteins of this family have been identified as allergens in humans. These proteins contain a common pattern of eight cysteines that form four disulfide bridges.
Probab=99.53 E-value=3.4e-15 Score=86.34 Aligned_cols=59 Identities=32% Similarity=0.658 Sum_probs=49.5
Q ss_pred ccCcccccCCCCCCCCCHhHHHHHhcC---CccccceeccCCCCCCCCC-CHHHHhhhhccCCC
Q 046518 29 LMACKPSVTPPNPTRPTTACCTALSHA---DLECFCKYKNSKLLPSLGI-DPKLAMQLPDKCKL 88 (94)
Q Consensus 29 l~~C~~yv~g~~~~~Ps~~CC~~v~~~---~~~ClC~~~~~~~~~~~~i-n~~~a~~Lp~~Cgv 88 (94)
|+||++|++|++ ..||++||++++++ ++.|+|+++++.....+++ |.+++.+||++||+
T Consensus 1 L~~C~~y~~~~~-~~Ps~~CC~~l~~~~~~~~~ClC~~~~~~~~~~~~~~~~~~a~~LP~~Cgv 63 (63)
T cd00010 1 LAPCLSYLTGGA-TAPPSDCCSGLKSVVKSDPKCLCAALNGPGASLLGLKNATRALALPAACGL 63 (63)
T ss_pred CcchHHHHcCCC-CCCChHHHHHHHHHHhcChhhHHHHHcCccccccCcccHHHHHhchHhcCC
Confidence 579999999865 47999999999987 6899999888644443455 79999999999996
No 6
>smart00499 AAI Plant lipid transfer protein / seed storage protein / trypsin-alpha amylase inhibitor domain family.
Probab=99.34 E-value=1e-12 Score=77.34 Aligned_cols=73 Identities=26% Similarity=0.592 Sum_probs=57.3
Q ss_pred cccccccccCcccccCCCC-CCCCCHhHHHHHhcC-CccccceeccCCCCCCCC---CCHHHHhhhhccCCCCCC-CCC
Q 046518 22 CNMTGAGLMACKPSVTPPN-PTRPTTACCTALSHA-DLECFCKYKNSKLLPSLG---IDPKLAMQLPDKCKLPHP-ANC 94 (94)
Q Consensus 22 C~~~~~~l~~C~~yv~g~~-~~~Ps~~CC~~v~~~-~~~ClC~~~~~~~~~~~~---in~~~a~~Lp~~Cgv~~p-~~c 94 (94)
|......+.+|++|+++.. ...|+++||++++.+ +..|+|..+.......+. ++.+++..||+.||+..| +.|
T Consensus 1 C~~~~~~~~~c~~~~~~~~~~~~p~~~CC~~l~~~~~~~C~C~~~~~~~~~~~~~~~~~~~~a~~lp~~C~~~~~~~~C 79 (79)
T smart00499 1 CGQVLLQLAPCLSYLTGGSPGAPPSQQCCSQLRGLNSAQCRCLALRAAVLGILEIPGVNAQNAASLPSACGVPPPYTDC 79 (79)
T ss_pred ChhhhhhHHhhHHHHcCCCCCCCCchHHHHHHHHhcccCCcchhhhcccccccchhhhhHHHHHhhHHhcCCCCCCCCC
Confidence 5556667789999998763 357999999999999 999999977643222222 599999999999999987 444
No 7
>PF00234 Tryp_alpha_amyl: Protease inhibitor/seed storage/LTP family This is a small subfamily; InterPro: IPR003612 This domain is found is several proteins, including plant lipid transfer proteins [], seed storage proteins [] and trypsin-alpha amylase inhibitors [, ]. The domain forms a four-helical bundle in a right-handed superhelix with a folded leaf topology, which is stabilised by disulphide bonds, and which has an internal cavity. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; PDB: 1BFA_A 1BEA_A 1MID_A 1BE2_A 1LIP_A 3GSH_A 1JTB_A 1UVC_B 1BV2_A 1UVB_A ....
Probab=98.97 E-value=1.5e-12 Score=79.79 Aligned_cols=71 Identities=25% Similarity=0.603 Sum_probs=55.5
Q ss_pred cccccccccCcccccCCCCCCCCCHhHHHHHhcCCccccceeccCCCCCC-----------CCCCHHHHhhhhccCCCCC
Q 046518 22 CNMTGAGLMACKPSVTPPNPTRPTTACCTALSHADLECFCKYKNSKLLPS-----------LGIDPKLAMQLPDKCKLPH 90 (94)
Q Consensus 22 C~~~~~~l~~C~~yv~g~~~~~Ps~~CC~~v~~~~~~ClC~~~~~~~~~~-----------~~in~~~a~~Lp~~Cgv~~ 90 (94)
|..+...+.+|.+|++++.. .|+..||++++.++..|.|..+... ..+ .+++..+|..||+.||+++
T Consensus 8 ~~~~~~~l~~c~~~~~~~~~-~~~~~CC~~L~~l~~~C~C~~i~~~-~~~~~~q~~~~~~~~~~~~~~a~~LP~~C~v~~ 85 (90)
T PF00234_consen 8 CSPVQVRLSPCLPYLQGGCQ-QPSQQCCQQLRQLDPQCRCEAIRQM-VRQVIQQQQQGGQEMQIMAQRAQNLPSMCNVSP 85 (90)
T ss_dssp CGTTSSHHHGGHHHHTTSSS-HHHHHHHHHHHHHHHHHHHHHHHHH-HHHSHHCTSTCSHHHHHHHHHHHHHHHHTTSSS
T ss_pred hhhccccccccHHHHhcccc-cchHHHhHHHHHHhHHhhCHHHHHH-HHhhhhhhhhhHHHHHHHHHHHHHHHHHCCCCC
Confidence 33334568999999997653 6999999999999999999976631 111 2588999999999999998
Q ss_pred CC-CC
Q 046518 91 PA-NC 94 (94)
Q Consensus 91 p~-~c 94 (94)
|+ .|
T Consensus 86 ~~~~C 90 (90)
T PF00234_consen 86 PYTDC 90 (90)
T ss_dssp SSS-G
T ss_pred CCCCC
Confidence 86 45
No 8
>PF14547 Hydrophob_seed: Hydrophobic seed protein
Probab=94.39 E-value=0.012 Score=36.20 Aligned_cols=72 Identities=18% Similarity=0.407 Sum_probs=44.7
Q ss_pred cccccccccCcccccC--C-CCCCCCCHhHHHHHhcC-C---ccccceeccCCCCCCCCCCHH-HHhhhhccCCCCCCCC
Q 046518 22 CNMTGAGLMACKPSVT--P-PNPTRPTTACCTALSHA-D---LECFCKYKNSKLLPSLGIDPK-LAMQLPDKCKLPHPAN 93 (94)
Q Consensus 22 C~~~~~~l~~C~~yv~--g-~~~~~Ps~~CC~~v~~~-~---~~ClC~~~~~~~~~~~~in~~-~a~~Lp~~Cgv~~p~~ 93 (94)
|-.+...|-.|.+.+- + ....++.++||.-++.+ | ..|+|..++...+...++|.. ....|-..||...|.+
T Consensus 2 CP~d~lkLgvC~~vL~l~~~~~g~~~~~~CC~li~gL~d~~AA~CLC~aika~vlg~i~~~ipv~l~~lln~CGk~~p~g 81 (85)
T PF14547_consen 2 CPRDALKLGVCANVLGLVNLVIGNPPRQPCCSLIAGLADLDAAVCLCTAIKANVLGLINVNIPVALNLLLNACGKTVPSG 81 (85)
T ss_pred CCCcchhhhhhhhhhhhhccccCCCCCCCcChHHhCcccchHHHHHHHHHhhhcccccccccccHHHHHHHHhCCcCcCC
Confidence 4444445666777661 0 01124788999999987 2 799998766432221233333 5556678899998865
No 9
>cd01958 HPS_like HPS_like: Hydrophobic Protein from Soybean (HPS)-like subfamily; composed of proteins with similarity to HPS, a small hydrophobic protein with unknown function related to cereal-type alpha-amylase inhibitors and lipid transfer proteins. In addition to HPS, members of this subfamily include a hybrid proline-rich protein (HyPRP) from maize, a dark-inducible protein (LeDI-2) from Lithospermum erythrorhizon, maize ZRP3 protein, and rice RcC3 protein. HyPRP is an embryo-specific protein that contains an N-terminal proline-rich domain and a C-terminal HPS-like cysteine-rich domain. It has been suggested that HyPRP may be involved in the stability and defense of the developing embryo. LeDI-2 is a root-specific protein that may be involved in regulating the biosynthesis of shikonin derivatives in L. erythrorhizon. Maize ZRP3 and rice RcC3 are root-specific proteins whose functions are yet to be determined. It has been reported that ZRP3 largely accumulates in a distinct subset
Probab=93.94 E-value=0.065 Score=32.98 Aligned_cols=72 Identities=19% Similarity=0.390 Sum_probs=43.6
Q ss_pred CcccccccccCcccccCCCC---CCCCCHhHHHHHhcC---C-ccccceeccCCCCCCCCCCHH-HHhhhhccCCCCCCC
Q 046518 21 ICNMTGAGLMACKPSVTPPN---PTRPTTACCTALSHA---D-LECFCKYKNSKLLPSLGIDPK-LAMQLPDKCKLPHPA 92 (94)
Q Consensus 21 ~C~~~~~~l~~C~~yv~g~~---~~~Ps~~CC~~v~~~---~-~~ClC~~~~~~~~~~~~in~~-~a~~Lp~~Cgv~~p~ 92 (94)
.|-.+...|--|..-+-..+ ..+|.++||.-++.+ | ..|+|..++.+.+. +.+|.. +..-+-..||...|+
T Consensus 3 ~CP~dalkLgvCanvL~l~~~~~g~~~~~~CC~ll~GL~dldAA~CLCtaikan~lg-i~~~~pv~l~llln~CGk~~P~ 81 (85)
T cd01958 3 TCPRDALKLGVCANVLGLSLLLLGTPAVQPCCPLIGGLADLDAAVCLCTAIKANILG-ISINIPVALSLLLNSCGRNVPP 81 (85)
T ss_pred CCCcchHHhchhHhhhhccccccCCCccchHHHHHcCchhhheeeeeeeeeeccccC-cccccChhHHHHHHHHcCcCCC
Confidence 34444445555666542101 135779999999987 2 79999977753222 233334 444455679999886
Q ss_pred C
Q 046518 93 N 93 (94)
Q Consensus 93 ~ 93 (94)
+
T Consensus 82 g 82 (85)
T cd01958 82 G 82 (85)
T ss_pred C
Confidence 5
No 10
>cd00261 AAI_SS AAI_SS: Alpha-Amylase Inhibitors (AAIs) and Seed Storage (SS) Protein subfamily; composed of cereal-type AAIs and SS proteins. They are mainly present in the seeds of a variety of plants. AAIs play an important role in the natural defenses of plants against insects and pathogens such as fungi, bacteria and viruses. AAIs impede the digestion of plant starch and proteins by inhibiting digestive alpha-amylases and proteinases. Also included in this subfamily are SS proteins such as 2S albumin, gamma-gliadin, napin, and prolamin. These AAIs and SS proteins are also known allergens in humans.
Probab=87.85 E-value=0.22 Score=31.11 Aligned_cols=68 Identities=21% Similarity=0.420 Sum_probs=43.9
Q ss_pred ccccCcccccCC---CCC----------CCCCHhHHHHHhcCCccccceeccCC---CCCCC------------CCCHHH
Q 046518 27 AGLMACKPSVTP---PNP----------TRPTTACCTALSHADLECFCKYKNSK---LLPSL------------GIDPKL 78 (94)
Q Consensus 27 ~~l~~C~~yv~g---~~~----------~~Ps~~CC~~v~~~~~~ClC~~~~~~---~~~~~------------~in~~~ 78 (94)
..|.+|..|+.- +.. ......||+.++.++..|.|..+... ..... ..-...
T Consensus 13 ~~L~~C~~yl~qq~~~~~~~~~~~~~~~~~~~qqCCqqL~~i~~qcrC~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (110)
T cd00261 13 QPLNSCREYLRQQCSGVGGPPVWPQQSCEVLRQQCCQQLAQIPEQCRCEALRQMVQGVIQQQQQQQEQQQGQEVERMRQA 92 (110)
T ss_pred ccCcHHHHHHHHhccCCCCCCCcCccccHHHHHHHHHHHHhCcHhhhHHHHHHHHHHHHHhhhccccccCcChHHHHHHH
Confidence 346778888741 110 01237899999999999999965420 00000 123458
Q ss_pred HhhhhccCCCCCCCCC
Q 046518 79 AMQLPDKCKLPHPANC 94 (94)
Q Consensus 79 a~~Lp~~Cgv~~p~~c 94 (94)
|..||..||+..++.|
T Consensus 93 a~~Lp~~C~~~~~~~C 108 (110)
T cd00261 93 AQNLPSMCNLYPPPYC 108 (110)
T ss_pred HHhhchhcCCCCCCCC
Confidence 9999999999875556
No 11
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=58.02 E-value=5.3 Score=22.77 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=18.5
Q ss_pred CCCCHhHHHHHhcCCccccce
Q 046518 42 TRPTTACCTALSHADLECFCK 62 (94)
Q Consensus 42 ~~Ps~~CC~~v~~~~~~ClC~ 62 (94)
...+++||.++..++..|.=.
T Consensus 26 ~~i~~~CC~~i~~~g~~C~~~ 46 (70)
T PF05617_consen 26 KNIGPECCKAINKMGKDCHPA 46 (70)
T ss_pred CCCChHHHHHHHHHhHhHHHH
Confidence 468899999999998888877
No 12
>PF15240 Pro-rich: Proline-rich
Probab=33.27 E-value=37 Score=23.67 Aligned_cols=16 Identities=25% Similarity=0.223 Sum_probs=8.1
Q ss_pred ChHH-HHHHHHhhhccC
Q 046518 1 MVVG-IGVGMSIGSSHA 16 (94)
Q Consensus 1 ~~~~-~~~a~~~~~~~a 16 (94)
|+|+ |.+|++.+.++.
T Consensus 1 MLlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 1 MLLVLLSVALLALSSAQ 17 (179)
T ss_pred ChhHHHHHHHHHhhhcc
Confidence 5444 445655555543
No 13
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=27.23 E-value=26 Score=21.70 Aligned_cols=8 Identities=13% Similarity=0.264 Sum_probs=3.3
Q ss_pred HHHHHHHH
Q 046518 3 VGIGVGMS 10 (94)
Q Consensus 3 ~~~~~a~~ 10 (94)
+.+++|++
T Consensus 9 L~l~LA~l 16 (95)
T PF07172_consen 9 LGLLLAAL 16 (95)
T ss_pred HHHHHHHH
Confidence 33444443
No 14
>PRK10040 hypothetical protein; Provisional
Probab=25.27 E-value=80 Score=17.48 Aligned_cols=20 Identities=20% Similarity=0.453 Sum_probs=16.3
Q ss_pred cCCcCcCcccccccccCccc
Q 046518 15 HAQGTVICNMTGAGLMACKP 34 (94)
Q Consensus 15 ~a~~~~~C~~~~~~l~~C~~ 34 (94)
+..+...|+..+..+.-|.+
T Consensus 14 a~a~n~PCSG~KGGis~C~g 33 (52)
T PRK10040 14 ADAGNKPCSGKKGGISHCTG 33 (52)
T ss_pred HHhcCCCCCCCCCCcccccC
Confidence 44567889999999999986
Done!