BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046521
(202 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SUR3|RTNLA_ARATH Reticulon-like protein B1 OS=Arabidopsis thaliana GN=RTNLB1 PE=1
SV=1
Length = 275
Score = 105 bits (261), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 76/128 (59%), Gaps = 4/128 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LFG ++P+H +LGGG AD+ +WKN+ +S +L T W++FE++EY+ +TLLC+ +
Sbjct: 73 LFGREQPVHKVLGGGKPADIFMWKNKKMSGGVLGGATAAWVVFELMEYHLLTLLCHVMIV 132
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDRT----CTSLFANVNCLLTKFYDISCGENLK 137
++ LF+WS A I SPP + E+ + + + L +N + +I+ G +LK
Sbjct: 133 VLAVLFLWSNATMFINKSPPKIPEVHIPEEPILQLASGLRIEINRGFSSLREIASGRDLK 192
Query: 138 LYILAFCA 145
+++A
Sbjct: 193 KFLIAIAG 200
>sp|Q9SUT9|RTNLB_ARATH Reticulon-like protein B2 OS=Arabidopsis thaliana GN=RTNLB2 PE=1
SV=1
Length = 271
Score = 103 bits (256), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LFG +RP+H +LGGG AD+ +WK++ +S + TV W+LFE++EY+ +TLLC+ +
Sbjct: 69 LFGRERPVHKVLGGGKPADIFMWKDKKMSGGVFGGATVAWVLFELMEYHLLTLLCHVMIV 128
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDRT----CTSLFANVNCLLTKFYDISCGENLK 137
+ LF+WS A I SPP + E+ + + + L +N ++ +I+ G ++K
Sbjct: 129 ALAVLFLWSNATMFIHKSPPKIPEVHIPEEPLLQLASGLRIEINRGISSLREIASGRDIK 188
Query: 138 LYILAFCA 145
++ A
Sbjct: 189 KFLSAIAG 196
>sp|Q6DBN4|RTNLF_ARATH Reticulon-like protein B6 OS=Arabidopsis thaliana GN=RTNLB6 PE=1
SV=1
Length = 253
Score = 102 bits (253), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 80/130 (61%), Gaps = 5/130 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LFG ++P+H +LGGG AD+ LW+++ LSA++L V T IW+LFE++EY+F++L+C+ L F
Sbjct: 52 LFGREKPVHKVLGGGLPADVFLWRDKKLSASVLGVATAIWVLFELVEYHFLSLVCHILIF 111
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDRT----CTSLFANVNCLLTKFYDISCGENLK 137
+ LF+ S A + +PP + EI + + ++L +N I+ G +LK
Sbjct: 112 ALAALFLLSNAHAFMNKTPPKIPEIHIKEEHFLMIVSALRNELNQAFVILRSIALGRDLK 171
Query: 138 LYIL-AFCAW 146
+++ F W
Sbjct: 172 KFLMVVFGLW 181
>sp|Q9FFS0|RTNLD_ARATH Reticulon-like protein B4 OS=Arabidopsis thaliana GN=RTNLB4 PE=1
SV=1
Length = 257
Score = 101 bits (252), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 75/128 (58%), Gaps = 4/128 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LFG ++P+H +LGGG AD+ LW+N+ +S +L VT W+LFE+ EY+ + LC+F F
Sbjct: 52 LFGREKPVHKVLGGGKPADIFLWRNKKVSGGVLGAVTASWVLFELFEYHLLAFLCHFAIF 111
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLK 137
+ LF+WS A I S P + E+ + + + + L +N LT +I+ G+++K
Sbjct: 112 ALAALFLWSNACTFIHKSTPHIPEVHIPEDPILQLVSGLRIEINRGLTLLRNIASGKDVK 171
Query: 138 LYILAFCA 145
+IL
Sbjct: 172 KFILVIAG 179
>sp|Q9LJQ5|RTNLI_ARATH Reticulon-like protein B9 OS=Arabidopsis thaliana GN=RTNLB9 PE=2
SV=1
Length = 225
Score = 101 bits (251), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 80/145 (55%), Gaps = 4/145 (2%)
Query: 2 VVKASVKNCNTDLNIIMSGCLFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIW 61
+ S + + I + LF QR +H I GGG VAD+LLW+ ++A +++ V+++W
Sbjct: 3 IFTGSSSDSEDERTIHKTTKLFTRQRSIHSIFGGGKVADILLWREPKIAATLVIGVSILW 62
Query: 62 LLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDRT----CTSLF 117
L E++EYNFITL+C+ M+ FIWS A+ + P + E+ L + + S
Sbjct: 63 FLMEVVEYNFITLICHASMTSMLFFFIWSTASDFLNWERPLIPEVVLDESSFKQLARSFH 122
Query: 118 ANVNCLLTKFYDISCGENLKLYILA 142
N +LTK D++CG + L+ L
Sbjct: 123 VRFNQILTKLLDVACGRDPPLFFLT 147
>sp|Q9SH59|RTNLC_ARATH Reticulon-like protein B3 OS=Arabidopsis thaliana GN=RTNLB3 PE=1
SV=1
Length = 255
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 72/128 (56%), Gaps = 4/128 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LFG ++PLH + GGG AD+ LW+N+ +S +L TV W+LFE+LEYN +TL +
Sbjct: 48 LFGREQPLHKLFGGGKPADIFLWRNKKVSGGVLGAATVSWILFELLEYNLLTLFGHISIL 107
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLK 137
+ LF+WS A+ I SP + E+ + + + + L +N T DI+ G +LK
Sbjct: 108 ALAVLFLWSSASTFIHKSPLHIPEVHIPEDVVLQLASGLRIEINRGFTVLRDIASGRDLK 167
Query: 138 LYILAFCA 145
++L
Sbjct: 168 KFLLVIAG 175
>sp|O82352|RTNLE_ARATH Reticulon-like protein B5 OS=Arabidopsis thaliana GN=RTNLB5 PE=1
SV=1
Length = 255
Score = 98.6 bits (244), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 49/143 (34%), Positives = 79/143 (55%), Gaps = 9/143 (6%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
+FG ++P+H +LGGG AD+ LW+++ LS A+L V T IW+LFE++EY+ ++LLC+
Sbjct: 52 MFGREKPVHKVLGGGKPADVFLWRDKKLSGAVLGVATAIWVLFELVEYHLLSLLCHISIL 111
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDRT----CTSLFANVNCLLTKFYDISCGENLK 137
+ LF+WS A LI + P + EI + + +SL +N I+ G +LK
Sbjct: 112 ALGGLFLWSNAHTLINKTSPQIPEIHVPEEAFLVVASSLRNELNQAFVILRSIALGRDLK 171
Query: 138 LYILAFCAWKHYRLCICDFKGRW 160
+++ L I G W
Sbjct: 172 KFLMVVVG-----LWIISVVGNW 189
>sp|Q9SS37|RTNLH_ARATH Reticulon-like protein B8 OS=Arabidopsis thaliana GN=RTNLB8 PE=1
SV=1
Length = 247
Score = 97.8 bits (242), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/125 (38%), Positives = 76/125 (60%), Gaps = 4/125 (3%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
LF Q+P+H +LGGG AD+LLW+N+ +SA++L+ T IW+LFE + ++F++L+CY L
Sbjct: 45 LFDRQKPIHHVLGGGKSADVLLWRNKKISASVLMGATAIWVLFEWINFHFLSLVCYALLL 104
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSD----RTCTSLFANVNCLLTKFYDISCGENLK 137
MI F+WS A+G + S V + L ++ VN L D++C NLK
Sbjct: 105 GMIAQFVWSNASGFLNRSQSRVPRLVLPKDFFAEVGVAVGKEVNRGLLFLQDLACKGNLK 164
Query: 138 LYILA 142
+++A
Sbjct: 165 QFLMA 169
>sp|A2RVT6|RTNLN_ARATH Reticulon-like protein B14 OS=Arabidopsis thaliana GN=RTNLB14 PE=2
SV=2
Length = 215
Score = 96.3 bits (238), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 49/119 (41%), Positives = 72/119 (60%), Gaps = 2/119 (1%)
Query: 29 LHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFI 88
L+ LGGG AD++ WKN+ S IL V T+IW LFE++EY FIT LC L + I
Sbjct: 22 LYHNLGGGRFADIMFWKNKKESGTILGVFTLIWFLFEVVEYPFITFLCQILLLFIFIFLI 81
Query: 89 WS--KAAGLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLKLYILAFCA 145
WS ++ LI PP+++++R+S+ LF +N + K YDIS G++ +L LA +
Sbjct: 82 WSYIGSSQLIQSKPPSINDLRISESNWRFLFNKINWFIIKLYDISSGKDFRLLFLAVVS 140
>sp|Q8GYH6|RTNLP_ARATH Reticulon-like protein B16 OS=Arabidopsis thaliana GN=RTNLB16 PE=2
SV=1
Length = 226
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 47/176 (26%), Positives = 89/176 (50%), Gaps = 13/176 (7%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
L G Q +H +GGG AD+LLW+ R+LS ++++ TV WL+FE F+++ L
Sbjct: 25 LLGRQITVHQFMGGGKAADLLLWRRRHLSLGVIIISTVAWLIFEFSGLPFLSVSSDVLLI 84
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDRTCTSLFAN----VNCLLTKFYDISCGENLK 137
+++ F+ ++ + ++ E+ LS+ S A+ +N LL +D++ G + +
Sbjct: 85 VIMISFVHARVSAFRNRQLHSLPELVLSEEMVNSAAASFRIKLNHLLVMAHDVTVGNDFR 144
Query: 138 LYI-LAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQGHLLK 192
L+ + C W + G +I L L G L+++IP +++Q + K
Sbjct: 145 LFFKVVICLW------LLSAIGSYI--SLCTLLYIGTILSVTIPALYSKYQSKVDK 192
>sp|Q9M392|RTNLL_ARATH Reticulon-like protein B12 OS=Arabidopsis thaliana GN=RTNLB12 PE=2
SV=1
Length = 203
Score = 71.6 bits (174), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 50/177 (28%), Positives = 90/177 (50%), Gaps = 11/177 (6%)
Query: 19 SGCLFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYF 78
S LF R +H+ILGGG VAD++LW+ +N+S I+ V W++FE Y TL+
Sbjct: 5 SDKLFNRDRTIHEILGGGIVADVMLWRKKNVSVGIVTVTIASWMVFEAFAYTIFTLISSV 64
Query: 79 LCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDRTCTS----LFANVNCLLTKFYDISCGE 134
L ++ LF+WSK+A ++ P + E ++S+ L +VN LL +DI+
Sbjct: 65 LLLLLSILFLWSKSASILNRPSPPLPEFQISEAMAEEASIWLRIHVNKLLQVSHDIAMAR 124
Query: 135 NLKLYILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQGHLL 191
+ +LY + L + G ++ + L + +++P F R++ +++
Sbjct: 125 DSELYTKVAVS-----LFLLSLIGS--LMDFQTLCHTSVLVVMTVPAFYERYEDYIV 174
>sp|Q9M145|RTNLG_ARATH Reticulon-like protein B7 OS=Arabidopsis thaliana GN=RTNLB7 PE=3
SV=2
Length = 244
Score = 68.2 bits (165), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 7/125 (5%)
Query: 22 LFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCF 81
+FG +RP+H +LGGG AD+LLW+++ ++ +L VTVIWLLF +T LC
Sbjct: 54 MFGRERPIHMVLGGGKPADVLLWRDKKVTLGLLSAVTVIWLLFGFGGRRLLTSLCRGSIL 113
Query: 82 IMITLFIWSKAAGLIPMSPPTVDEIRLSDR----TCTSLFANVNCLLTKFYDISCGENLK 137
++ F+WS A + SP + +I + ++ +++ +NC I+ ++K
Sbjct: 114 FLLLSFLWSNA---LNKSPENMMDIYIPEKPLLQAASAMTFELNCAFATLRSIALERDIK 170
Query: 138 LYILA 142
+++A
Sbjct: 171 NFVMA 175
>sp|Q9LT71|RTNLK_ARATH Reticulon-like protein B11 OS=Arabidopsis thaliana GN=RTNLB11 PE=2
SV=1
Length = 200
Score = 67.8 bits (164), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 83/169 (49%), Gaps = 13/169 (7%)
Query: 30 HDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIW 89
H LG G+VAD+LLW+NR + +L+ T W LFE YN ++ + L ++ F+W
Sbjct: 14 HQSLGAGSVADLLLWRNRTGAVILLISSTGFWFLFERAGYNLLSFVSNVLLLLVAIFFLW 73
Query: 90 SKAAGLI--PMSPPTVDEI--RLSDRTCTSLFANVNCLLTKFYDISCGEN-LKLYILAFC 144
+K+A ++ P+ P EI +++ L +N +L+ DI+ N ++L ++
Sbjct: 74 AKSATVLNRPLPPVPNMEIPEEFANKAADDLRVWINYVLSIASDITIARNPIRLLQVSLV 133
Query: 145 AWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQGHLLKK 193
W + G ++ L G L++S P ++Q H+ +K
Sbjct: 134 LWA------ISYVG--TLINSLTLVYIGVLLSLSFPIVYEKYQDHIDEK 174
>sp|Q9ZU43|RTNLO_ARATH Reticulon-like protein B15 OS=Arabidopsis thaliana GN=RTNLB15 PE=2
SV=2
Length = 191
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 52/160 (32%), Positives = 83/160 (51%), Gaps = 8/160 (5%)
Query: 29 LHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFI 88
+ ILG G VAD+ LWK++ S LV+ T+ W L E +E + LLC L +M+ LF+
Sbjct: 4 VDQILGDGAVADLCLWKDKINSGITLVMATLFWFLLEFMEARLVPLLCSILLLLMLILFL 63
Query: 89 WSKAAGL-IPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWK 147
W+K + PPT +E+ D +LF+ + L Y+I+ G++ K ++
Sbjct: 64 WAKFGEVFFTRRPPTPEELNQPDSPLKALFSMMEGHLLMLYEIAYGKDNKTFLKTIL--- 120
Query: 148 HYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQ 187
Y I + G +I L L +L C C +++IP +FQ
Sbjct: 121 -YVAIIYNI-GSYISL-LTILYICLVC-SMTIPVVYMQFQ 156
>sp|Q6NPD8|RTNLJ_ARATH Reticulon-like protein B10 OS=Arabidopsis thaliana GN=RTNLB10 PE=2
SV=1
Length = 201
Score = 57.0 bits (136), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 13/182 (7%)
Query: 25 LQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMI 84
++ +H + G+VAD+++WKNR +L T++W LFE Y+F + ++
Sbjct: 1 MEESVHQSIRFGSVADLIMWKNRRGGFLLLGSTTLLWFLFEKCGYSFFPFVVNTQLLSVV 60
Query: 85 TLFIWSKAAGLIPMSPPTVDEIRLSDR----TCTSLFANVNCLLTKFYDISCGENLK-LY 139
LF+W+K+A L P + + +++ ++ +N +L +I G N K L+
Sbjct: 61 ILFLWAKSAILFNRPMPQLPNLEITEEFVFMVADAIRVWINTVLAVAREIYVGRNAKQLF 120
Query: 140 ILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQGHLLKKRSICEQ 199
++ W F G + L + G L++ IP R+Q + +K S+ +
Sbjct: 121 RVSVVLWT------VSFVGNF--LNFLTILYLGVVLSLLIPFLYERYQDLIDEKLSLTHR 172
Query: 200 GI 201
I
Sbjct: 173 VI 174
>sp|O64837|RTNLM_ARATH Reticulon-like protein B13 OS=Arabidopsis thaliana GN=RTNLB13 PE=2
SV=1
Length = 206
Score = 37.0 bits (84), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 5/84 (5%)
Query: 28 PLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLF 87
P DI V D+ LW+ + L+ + L+V T W+L + IT++ + ++ +F
Sbjct: 11 PKSDI-----VEDIYLWRRKKLAFSTLLVSTSTWILLSFYGFTTITIVSWIGIAVVSMIF 65
Query: 88 IWSKAAGLIPMSPPTVDEIRLSDR 111
+W L+ P + + +S+
Sbjct: 66 LWGSLLRLLSKVEPELSGLEVSEE 89
>sp|Q67ZE1|HSDD2_ARATH 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2
OS=Arabidopsis thaliana GN=3BETAHSD/D2 PE=2 SV=2
Length = 564
Score = 32.3 bits (72), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Query: 32 ILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSK 91
ILGGG VAD LLWK+ + + ++ I+ F +T L L + LF+
Sbjct: 378 ILGGGKVADTLLWKDLKQTLIAIFILISIYYNFVATGSTVVTALSKALLVASVFLFLH-- 435
Query: 92 AAGLIP 97
G++P
Sbjct: 436 --GILP 439
>sp|Q9URT2|YJU3_SCHPO Uncharacterized protein P25A2.03 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=SPCP25A2.03 PE=1 SV=1
Length = 752
Score = 31.6 bits (70), Expect = 4.0, Method: Composition-based stats.
Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 94 GLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISC 132
G + +SPP+ +SDRT S +N L T ++D+ C
Sbjct: 197 GKVELSPPSTP---ISDRTDLSYHKKLNTLFTAYWDLQC 232
>sp|P17662|SPIKE_IBVD3 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus
(strain D3896) GN=S PE=3 SV=2
Length = 550
Score = 31.2 bits (69), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 38 VADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIP 97
A + W +A++ + +L+ + F T C F F++ + A+G P
Sbjct: 65 TAGAIYWSKNFSAASVAMTAPQNGMLWSTAQ--FCTAHCNFTDFVVFVTHCYKSASGSCP 122
Query: 98 MSP--PTVDEIRLSDRTCTSLFANVNCLLTKF 127
++ P IR+S +SLF N+ +TK+
Sbjct: 123 LTGLIPQY-HIRISAMKNSSLFYNLTVAVTKY 153
>sp|P30206|SPIKE_IBVU1 Spike glycoprotein (Fragment) OS=Avian infectious bronchitis virus
(strain UK/123/82) GN=S PE=3 SV=1
Length = 520
Score = 31.2 bits (69), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 38 VADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIP 97
A + W +A++ + +L+ + F T C F F++ + A+G P
Sbjct: 47 TAGAIYWSKNFSAASVAMTAPQNGMLWSTAQ--FCTAHCNFTDFVVFVTHCYKSASGSCP 104
Query: 98 MSP--PTVDEIRLSDRTCTSLFANVNCLLTKF 127
++ P IR+S +SLF N+ +TK+
Sbjct: 105 LTGLIPQY-HIRISAMKNSSLFYNLTVAVTKY 135
>sp|B1XTA2|UPPP_POLNS Undecaprenyl-diphosphatase OS=Polynucleobacter necessarius subsp.
necessarius (strain STIR1) GN=uppP PE=3 SV=1
Length = 281
Score = 30.8 bits (68), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 48/107 (44%), Gaps = 26/107 (24%)
Query: 17 IMSGCLFGLQRPLH---------DILGGGTVADML-LWK-----NRNLSAAILV------ 55
I+ G LFGL R + ++GG T ++L LWK + + AI+V
Sbjct: 176 IIGGMLFGLPRAVATEFSFFLAIPVIGGATAYELLKLWKAPVAFSGEFTLAIVVGFIAAF 235
Query: 56 ---VVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMS 99
V V WL+ + +NFI Y + F ++ LF + GLI S
Sbjct: 236 ISAFVCVRWLIHYVAHHNFIPFAWYRIAFGILVLF--TSYTGLIAWS 280
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.332 0.146 0.486
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 73,357,871
Number of Sequences: 539616
Number of extensions: 2769486
Number of successful extensions: 6579
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6554
Number of HSP's gapped (non-prelim): 26
length of query: 202
length of database: 191,569,459
effective HSP length: 112
effective length of query: 90
effective length of database: 131,132,467
effective search space: 11801922030
effective search space used: 11801922030
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (22.0 bits)
S2: 58 (26.9 bits)