Query 046521
Match_columns 202
No_of_seqs 107 out of 352
Neff 5.2
Searched_HMMs 46136
Date Fri Mar 29 12:57:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046521.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046521hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1792 Reticulon [Intracellul 100.0 1.8E-48 3.9E-53 336.4 13.4 179 15-201 20-207 (230)
2 PF02453 Reticulon: Reticulon; 100.0 1.6E-36 3.5E-41 243.8 -7.3 156 38-201 1-167 (169)
3 PF04842 DUF639: Plant protein 80.8 7.5 0.00016 39.2 8.1 105 37-147 505-624 (683)
4 PF08372 PRT_C: Plant phosphor 72.6 2 4.4E-05 35.6 1.4 27 35-61 82-108 (156)
5 PF06398 Pex24p: Integral pero 62.3 63 0.0014 29.2 9.1 24 36-59 30-53 (359)
6 PF10256 Erf4: Golgin subfamil 56.2 75 0.0016 24.2 7.3 68 107-200 29-96 (118)
7 PRK15489 nfrB bacteriophage N4 49.8 44 0.00096 33.9 6.4 34 35-85 348-381 (703)
8 PF01484 Col_cuticle_N: Nemato 49.3 33 0.00071 22.2 3.8 31 169-199 11-44 (53)
9 COG5038 Ca2+-dependent lipid-b 37.7 30 0.00066 37.1 3.2 78 48-130 156-236 (1227)
10 KOG1889 Putative phosphoinosit 35.3 95 0.0021 30.9 5.9 81 24-105 485-576 (579)
11 PF02453 Reticulon: Reticulon; 29.2 21 0.00045 28.2 0.3 29 36-64 98-126 (169)
12 KOG1726 HVA22/DP1 gene product 26.1 1E+02 0.0022 27.2 4.1 30 165-200 81-110 (225)
13 KOG1792 Reticulon [Intracellul 23.3 28 0.00062 30.5 0.1 54 126-187 42-96 (230)
14 PF10958 DUF2759: Protein of u 20.7 1.2E+02 0.0026 20.9 2.7 27 45-75 18-44 (52)
No 1
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=1.8e-48 Score=336.38 Aligned_cols=179 Identities=33% Similarity=0.606 Sum_probs=172.2
Q ss_pred CccccCCCCCCCCccccccCCCceeeeeeeccccchhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhc
Q 046521 15 NIIMSGCLFGLQRPLHDILGGGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAG 94 (202)
Q Consensus 15 ~~~~~~~~f~r~~~~h~~LGgg~vaDlLlWRd~k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv~~~ll~~l~~lFi~s~~~~ 94 (202)
.+...+|+|+||+|+|+.+|||+++|+++|||+|.||++++++++.|++|+..+|+++|++|+++++.+.++|.|+++..
T Consensus 20 ~~~~~~rlf~~~~~v~~~lg~~~vaDlllWrdkk~s~~vl~~~~~~w~lf~~~~~~~vt~~~~i~ll~~~i~F~w~~~~~ 99 (230)
T KOG1792|consen 20 AIEKSSRLFGREGPVHKVLGGGKVADLLLWRDKKKSGTVLGVATALWLLFEFFSYNSVTLLCHILLLALAILFLWSKAVT 99 (230)
T ss_pred ccchhccccCCCccccccCCCCchhheeeeeccccceeehHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred ccCC-CCC--CCC-ceeechHHHH----HHHHHHHHHHHHhhhhccccCHHHHHH-HHHHHhccccccceEeccccccch
Q 046521 95 LIPM-SPP--TVD-EIRLSDRTCT----SLFANVNCLLTKFYDISCGENLKLYIL-AFCAWKHYRLCICDFKGRWIILPL 165 (202)
Q Consensus 95 ~~~~-~~p--~~p-~i~lsee~~~----~~~~~iN~~l~~l~~l~~g~d~~~~lk-~~~L~~~~~~~~ls~vGs~fs~~l 165 (202)
+++| ++| ..| |+++|||.+. +++.++|+.++++|++++|+|+++|+| ++.+|+ +|++|+|||+ +
T Consensus 100 ~~~k~~~~~~~lp~~i~ipee~~~~~a~~~~~~in~~l~~l~~ia~~~d~~~~lk~~v~lw~------lS~vGs~fn~-l 172 (230)
T KOG1792|consen 100 FLNKKSEPGAYLPVEITIPEEFVLALASSLRVEINQALSELRDIALGRDLKDFLKVAVGLWI------LSYVGSLFNF-L 172 (230)
T ss_pred HHhcCCCccccCCceeecCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH------HHHHHHhhhH-H
Confidence 8888 777 788 9999999999 888899999999999999999999999 999999 9999999999 9
Q ss_pred hHHHHhhhhhhhhhhHHHhhchHHHHHHHHHHhhcC
Q 046521 166 KVLKTCGGCLTISIPKFLTRFQGHLLKKRSICEQGI 201 (202)
Q Consensus 166 TLl~i~~v~~~fTlP~~Yekyq~~ID~~~~~~~~~~ 201 (202)
|++|+|++ ++||+|++||||||+||++++.+++++
T Consensus 173 Tll~ig~v-~~~TvP~~YEky~d~ID~~~~~~~~~~ 207 (230)
T KOG1792|consen 173 TLLYIGLV-LLFTVPVLYEKYEDQIDPYLGKVMEEL 207 (230)
T ss_pred HHHHHHHH-HHhcccchhHHhHHHHhHHHHHHHHHH
Confidence 99999999 999999999999999999999998763
No 2
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=100.00 E-value=1.6e-36 Score=243.75 Aligned_cols=156 Identities=22% Similarity=0.467 Sum_probs=43.6
Q ss_pred eeeeeeeccccchhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCC------CCCCceeechH
Q 046521 38 VADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSP------PTVDEIRLSDR 111 (202)
Q Consensus 38 vaDlLlWRd~k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv~~~ll~~l~~lFi~s~~~~~~~~~~------p~~p~i~lsee 111 (202)
|+|+++||||+.||.+|++++++|+++.+++||++|++|+++++++.+.+.+....+.+++.+ |+.++.++|||
T Consensus 1 V~dll~W~~~~~S~~v~~~~~~~~~l~~~~~~s~is~~s~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (169)
T PF02453_consen 1 VADLLLWRDPKKSGIVFGAILLFWLLFWLFNYSLISLVSYILLLLLAISFLYRLLSKVLSRSPKGPFKEPLDYDLEISEE 80 (169)
T ss_dssp ----------------------------------------------------THCCCTCCHHHHCTTHHHHCHHHHHCCH
T ss_pred CceeeEecCCCchHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCccCCccccccccHH
Confidence 689999999999999999999999999999999999999999999999999999999898866 45557899999
Q ss_pred HHH----HHHHHHHHHHHHhhhhccccCHHHHHH-HHHHHhccccccceEeccccccchhHHHHhhhhhhhhhhHHHhhc
Q 046521 112 TCT----SLFANVNCLLTKFYDISCGENLKLYIL-AFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRF 186 (202)
Q Consensus 112 ~~~----~~~~~iN~~l~~l~~l~~g~d~~~~lk-~~~L~~~~~~~~ls~vGs~fs~~lTLl~i~~v~~~fTlP~~Yeky 186 (202)
.++ ++++.+|+.+..+|++..++|++.++| ++++|+ ++++|+++|+ +|++|++++ ++||+|.+||+|
T Consensus 81 ~~~~~~~~~~~~~n~~~~~~~~l~~~~~~~~~l~~~~~l~~------l~~lg~~~s~-~~L~~l~~~-~~f~~P~ly~~~ 152 (169)
T PF02453_consen 81 RVERLADSVAEWINSVLSWLRRLVFGEDPKKSLKVFVVLYI------LSFLGSWFSF-LTLLYLGVL-GAFTVPKLYEKY 152 (169)
T ss_dssp HHHHHHHHCCCCCCHHHHHHHCCCHCT-TTGGG-----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHH------HHHHHHHcCH-HHHHHHHHH-HHHhhHHHHHHH
Confidence 888 666688999999999999999999999 999999 9999999999 999999999 999999999999
Q ss_pred hHHHHHHHHHHhhcC
Q 046521 187 QGHLLKKRSICEQGI 201 (202)
Q Consensus 187 q~~ID~~~~~~~~~~ 201 (202)
|++||++++++++|+
T Consensus 153 ~~~Id~~~~~~~~~~ 167 (169)
T PF02453_consen 153 QEEIDQYVAKVKEKV 167 (169)
T ss_dssp ---------------
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999986
No 3
>PF04842 DUF639: Plant protein of unknown function (DUF639); InterPro: IPR006927 The sequences in this family are plant proteins of unknown function.
Probab=80.84 E-value=7.5 Score=39.17 Aligned_cols=105 Identities=15% Similarity=0.222 Sum_probs=60.3
Q ss_pred ceeeeeeeccccchhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhcccCCC--------CCCCC---c
Q 046521 37 TVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMS--------PPTVD---E 105 (202)
Q Consensus 37 ~vaDlLlWRd~k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv~~~ll~~l~~lFi~s~~~~~~~~~--------~p~~p---~ 105 (202)
...++..|+||.+|...++....+.+ =.+.+|-+-++ ++.+++..+|.+-.+-.+|. +|+-. .
T Consensus 505 ~~~~l~~We~P~kt~~Fl~~~~~iI~-r~wl~Y~~p~~-----Ll~~a~~Ml~~r~~~~~g~~~~~v~V~~pP~~nTvEq 578 (683)
T PF04842_consen 505 WLQKLASWEEPLKTLVFLALFLYIIY-RGWLGYIFPAF-----LLFSAVFMLWLRYQGRLGKSFGEVTVRDPPPKNTVEQ 578 (683)
T ss_pred HHHHHhhccCcchhHHHHHHHHHHHH-HHHHHHHHHHH-----HHHHHHHHHHHHhhhccCCccceEEecCCCCccHHHH
Confidence 44578899999999998877654322 23444443332 22223333443332122221 12111 1
Q ss_pred eeechHHHH---HHHHHHHHHHHHhhhhccccCHHHHHH-HHHHHh
Q 046521 106 IRLSDRTCT---SLFANVNCLLTKFYDISCGENLKLYIL-AFCAWK 147 (202)
Q Consensus 106 i~lsee~~~---~~~~~iN~~l~~l~~l~~g~d~~~~lk-~~~L~~ 147 (202)
+--=++... ......|-++-++|.|.+....+-+-+ ++.|-.
T Consensus 579 ilalQ~Ais~~E~~iQ~~NI~LLKiRsllls~~PqaT~~Va~~Ll~ 624 (683)
T PF04842_consen 579 ILALQEAISQLEEYIQAANIVLLKIRSLLLSKFPQATNKVALALLG 624 (683)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 111112222 677788999999999999999998888 666655
No 4
>PF08372 PRT_C: Plant phosphoribosyltransferase C-terminal; InterPro: IPR013583 This domain is found at the C terminus of phosphoribosyltransferases and phosphoribosyltransferase-like proteins. It contains putative transmembrane regions. It often appears together with calcium-ion dependent C2 domains (IPR000008 from INTERPRO).
Probab=72.57 E-value=2 Score=35.63 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=22.8
Q ss_pred CCceeeeeeeccccchhHHHHHHHHHH
Q 046521 35 GGTVADMLLWKNRNLSAAILVVVTVIW 61 (202)
Q Consensus 35 gg~vaDlLlWRd~k~Sg~vl~~~t~~w 61 (202)
|.++..++-||||..|+...++++++-
T Consensus 82 gERl~allsWrdP~aT~lf~~~clv~a 108 (156)
T PF08372_consen 82 GERLQALLSWRDPRATALFVVFCLVAA 108 (156)
T ss_pred HHHHHHhhccCCccHHHHHHHHHHHHH
Confidence 678999999999999998887766543
No 5
>PF06398 Pex24p: Integral peroxisomal membrane peroxin; InterPro: IPR010482 Peroxisomes play diverse roles in the cell, compartmentalising many activities related to lipid metabolism and functioning in the decomposition of toxic hydrogen peroxide. Sequence similarity was identified between two hypothetical proteins and the peroxin integral membrane protein Pex24p [].
Probab=62.28 E-value=63 Score=29.24 Aligned_cols=24 Identities=25% Similarity=0.527 Sum_probs=18.7
Q ss_pred CceeeeeeeccccchhHHHHHHHH
Q 046521 36 GTVADMLLWKNRNLSAAILVVVTV 59 (202)
Q Consensus 36 g~vaDlLlWRd~k~Sg~vl~~~t~ 59 (202)
..+.+++.|+|+-.|-..+...+.
T Consensus 30 d~vl~il~W~~p~~t~~~L~l~t~ 53 (359)
T PF06398_consen 30 DRVLRILTWTNPDYTLSFLLLYTF 53 (359)
T ss_pred HHHHHeEEeCCCCcchHHHHHHHH
Confidence 467889999999988877765543
No 6
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=56.24 E-value=75 Score=24.19 Aligned_cols=68 Identities=13% Similarity=0.108 Sum_probs=42.7
Q ss_pred eechHHHHHHHHHHHHHHHHhhhhccccCHHHHHHHHHHHhccccccceEeccccccchhHHHHhhhhhhhhhhHHHhhc
Q 046521 107 RLSDRTCTSLFANVNCLLTKFYDISCGENLKLYILAFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRF 186 (202)
Q Consensus 107 ~lsee~~~~~~~~iN~~l~~l~~l~~g~d~~~~lk~~~L~~~~~~~~ls~vGs~fs~~lTLl~i~~v~~~fTlP~~Yeky 186 (202)
.+|++..+.+...+|..+...++-....++...+ +.. +|+ ++ ...-.-..|+|.
T Consensus 29 ~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~--------------------l~~-lt~-~l----~~~~~~~~~~~~ 82 (118)
T PF10256_consen 29 YISPEEFEEIINTINQILKEAFEPISWRNIIENI--------------------LGC-LTL-GL----SSLCFKTHYKRK 82 (118)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH--------------------HHH-HHH-HH----HHHHHHHHHHHH
Confidence 5899988899999999987765443333333222 222 221 11 111125578999
Q ss_pred hHHHHHHHHHHhhc
Q 046521 187 QGHLLKKRSICEQG 200 (202)
Q Consensus 187 q~~ID~~~~~~~~~ 200 (202)
..++|++++-+.++
T Consensus 83 ~~~le~~l~~~N~~ 96 (118)
T PF10256_consen 83 LRELEKYLEQLNEE 96 (118)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999877663
No 7
>PRK15489 nfrB bacteriophage N4 adsorption protein B; Provisional
Probab=49.79 E-value=44 Score=33.93 Aligned_cols=34 Identities=24% Similarity=0.577 Sum_probs=22.8
Q ss_pred CCceeeeeeeccccchhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHH
Q 046521 35 GGTVADMLLWKNRNLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMIT 85 (202)
Q Consensus 35 gg~vaDlLlWRd~k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv~~~ll~~l~~ 85 (202)
|.....-++|||+|- .+| |++++++|++++..+.
T Consensus 348 ~~~~~~y~~~rdrkg------~~t-----------~~~~~~~y~~~~~~~~ 381 (703)
T PRK15489 348 GSLATRYLLFRDRKG------IVT-----------SLVSIIAYVLLLNFLL 381 (703)
T ss_pred chHhhhhhhhhccch------hHH-----------HHHHHHHHHHHHHHHH
Confidence 455556788999991 112 6778888887766554
No 8
>PF01484 Col_cuticle_N: Nematode cuticle collagen N-terminal domain; InterPro: IPR002486 The function of this domain is unknown. It is found in the N-terminal region of nematode cuticle collagens (see IPR008160 from INTERPRO). Cuticle is a tough elastic structure secreted by hypodermal cells and is primarily composed of collagen proteins [, ].; GO: 0042302 structural constituent of cuticle
Probab=49.33 E-value=33 Score=22.24 Aligned_cols=31 Identities=16% Similarity=0.187 Sum_probs=21.2
Q ss_pred HHhhhhhhhhhhHHHh---hchHHHHHHHHHHhh
Q 046521 169 KTCGGCLTISIPKFLT---RFQGHLLKKRSICEQ 199 (202)
Q Consensus 169 ~i~~v~~~fTlP~~Ye---kyq~~ID~~~~~~~~ 199 (202)
.++++++.+++|.+|. +.|++++.-++-+|.
T Consensus 11 ~~ai~~~l~~~p~i~~~i~~~~~~~~~em~~fk~ 44 (53)
T PF01484_consen 11 TVAILSCLITVPSIYNDIQNFQSELDDEMEEFKE 44 (53)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444447899999997 566677776666654
No 9
>COG5038 Ca2+-dependent lipid-binding protein, contains C2 domain [General function prediction only]
Probab=37.66 E-value=30 Score=37.09 Aligned_cols=78 Identities=21% Similarity=0.432 Sum_probs=42.4
Q ss_pred cchhHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCCceeechHHHH---HHHHHHHHHH
Q 046521 48 NLSAAILVVVTVIWLLFEILEYNFITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVDEIRLSDRTCT---SLFANVNCLL 124 (202)
Q Consensus 48 k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv~~~ll~~l~~lFi~s~~~~~~~~~~p~~p~i~lsee~~~---~~~~~iN~~l 124 (202)
.-++++|+++.+.|+ |...++++.+++ ++.+...++|..-..-++|+....=.=+.++|... .=.+|+|..|
T Consensus 156 qs~~i~l~~~v~Swi-fg~~~fs~~slf----fii~~~~~vY~~~~~rv~rnird~v~~~~~~ek~~nd~ESveWLNtfL 230 (1227)
T COG5038 156 QSVAIVLIGSVASWI-FGYLGFSFASLF----FIILVTMYVYRTCIKRVRRNIRDLVQQELSEEKLENDYESVEWLNTFL 230 (1227)
T ss_pred hhhhHHHHHHHHHHH-HHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHH
Confidence 356888999888875 455555554432 22233445666555444443322112244444444 4456777777
Q ss_pred HHhhhh
Q 046521 125 TKFYDI 130 (202)
Q Consensus 125 ~~l~~l 130 (202)
.++=-|
T Consensus 231 ~KfW~i 236 (1227)
T COG5038 231 QKFWPI 236 (1227)
T ss_pred Hhheec
Confidence 776444
No 10
>KOG1889 consensus Putative phosphoinositide phosphatase [Lipid transport and metabolism]
Probab=35.28 E-value=95 Score=30.91 Aligned_cols=81 Identities=12% Similarity=0.130 Sum_probs=47.6
Q ss_pred CCCCccccccCCCceeeeee----------eccccchhHHHHHHHHHHHHHHHhC-CchhHHHHHHHHHHHHHHHHHHHH
Q 046521 24 GLQRPLHDILGGGTVADMLL----------WKNRNLSAAILVVVTVIWLLFEILE-YNFITLLCYFLCFIMITLFIWSKA 92 (202)
Q Consensus 24 ~r~~~~h~~LGgg~vaDlLl----------WRd~k~Sg~vl~~~t~~w~Lf~~~~-ys~iSlv~~~ll~~l~~lFi~s~~ 92 (202)
.||.+.+-.+|+=.|.|... |+---.-+ ++.+++.+...-.++. =|++-.+.+....++...+++.+.
T Consensus 485 ~rQDsiDL~lG~f~v~~s~s~~~pl~~~~~~~~~~~p~-i~lva~~m~~is~l~~~~~l~~~l~w~~~~~~s~~~i~~~g 563 (579)
T KOG1889|consen 485 TRQDSIDLFLGNFRVDVSRSDLSPLPLRRGLYILAAPI-IFLVALSMFIISLLFSTPNLLYRLFWFAIMVVSIAVILING 563 (579)
T ss_pred cccchHHHhcCCcccccccccCCCcccccCceeehhhH-HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhheech
Confidence 48889999999877777764 32222212 2222332222222221 344444455555556666778888
Q ss_pred hcccCCCCCCCCc
Q 046521 93 AGLIPMSPPTVDE 105 (202)
Q Consensus 93 ~~~~~~~~p~~p~ 105 (202)
.+++|+|.+..|.
T Consensus 564 ~~fvnwPrl~~p~ 576 (579)
T KOG1889|consen 564 DQFVNWPRLVLPQ 576 (579)
T ss_pred HHhcCCccccCcc
Confidence 9999999887774
No 11
>PF02453 Reticulon: Reticulon; InterPro: IPR003388 Eukaryotic proteins of the reticulon (RTN) family all share an association with the endoplasmic reticulum (ER). Whereas amino-terminal regions are not related to one another, all reticulon proteins share a 200 amino acid residue region of sequence similarity at the C-terminal. This region contains two large hydrophobic regions separated by a 66 residue hydrophilic segment. The conserved hydrophobic C-terminal portion has been shown to play an essential role in the association of reticulons with the ER membrane. The hydrophobic portions are supposed to be membrane-embedded and the hydrophilic 66 residue localized to the lumenal/extracellular face of the membrane. Most reticulons have a di-lysine ER retention motif at the C-terminal. Because of their likely association with the rough as well as the smooth ER, the reticulons might play some role in transport processes or in regulation of intracellular calcium levels. It has been suggested that the reticulons may be serving as ER-associated channel-like complexes [, , , ].; GO: 0005783 endoplasmic reticulum; PDB: 2KO2_A 2JV5_A 2G31_A.
Probab=29.21 E-value=21 Score=28.17 Aligned_cols=29 Identities=14% Similarity=0.202 Sum_probs=12.8
Q ss_pred CceeeeeeeccccchhHHHHHHHHHHHHH
Q 046521 36 GTVADMLLWKNRNLSAAILVVVTVIWLLF 64 (202)
Q Consensus 36 g~vaDlLlWRd~k~Sg~vl~~~t~~w~Lf 64 (202)
....+++.|+|++.|..+++++.++..+.
T Consensus 98 ~~~~~l~~~~~~~~~l~~~~~l~~l~~lg 126 (169)
T PF02453_consen 98 SWLRRLVFGEDPKKSLKVFVVLYILSFLG 126 (169)
T ss_dssp HHHHCCCHCT-TTGGG-------------
T ss_pred HHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 35568999999999999887776655544
No 12
>KOG1726 consensus HVA22/DP1 gene product-related proteins [Defense mechanisms]
Probab=26.13 E-value=1e+02 Score=27.20 Aligned_cols=30 Identities=7% Similarity=-0.077 Sum_probs=20.6
Q ss_pred hhHHHHhhhhhhhhhhHHHhhchHHHHHHHHHHhhc
Q 046521 165 LKVLKTCGGCLTISIPKFLTRFQGHLLKKRSICEQG 200 (202)
Q Consensus 165 lTLl~i~~v~~~fTlP~~Yekyq~~ID~~~~~~~~~ 200 (202)
.+.+|=-++ -|. -.++|++||+.+..++++
T Consensus 81 ~~~vY~~f~-----~p~-ls~~E~eid~~l~~~k~~ 110 (225)
T KOG1726|consen 81 ASYVYRKFL-----RPF-LSKHEEEIDRMLVEAKER 110 (225)
T ss_pred cHHHHHHHh-----hhh-hhhHHHHHHHHHHHHHHH
Confidence 555555554 222 247799999999998875
No 13
>KOG1792 consensus Reticulon [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.34 E-value=28 Score=30.54 Aligned_cols=54 Identities=13% Similarity=-0.077 Sum_probs=41.2
Q ss_pred HhhhhccccCHHHHHH-HHHHHhccccccceEeccccccchhHHHHhhhhhhhhhhHHHhhch
Q 046521 126 KFYDISCGENLKLYIL-AFCAWKHYRLCICDFKGRWIILPLKVLKTCGGCLTISIPKFLTRFQ 187 (202)
Q Consensus 126 ~l~~l~~g~d~~~~lk-~~~L~~~~~~~~ls~vGs~fs~~lTLl~i~~v~~~fTlP~~Yekyq 187 (202)
+..|+..++|.+.++. .+.... +-.+-..++. .++...+-+ .++++++.|-.++
T Consensus 42 ~vaDlllWrdkk~s~~vl~~~~~------~w~lf~~~~~-~~vt~~~~i-~ll~~~i~F~w~~ 96 (230)
T KOG1792|consen 42 KVADLLLWRDKKKSGTVLGVATA------LWLLFEFFSY-NSVTLLCHI-LLLALAILFLWSK 96 (230)
T ss_pred chhheeeeeccccceeehHHHHH------HHHHHHHhhh-hHHHHHHHH-HHHHHHHHHHHHH
Confidence 4679999999999988 666666 5566677777 777777777 7888887777664
No 14
>PF10958 DUF2759: Protein of unknown function (DUF2759); InterPro: IPR024490 This family of proteins with unknown function appear to be restricted to Bacillales.
Probab=20.68 E-value=1.2e+02 Score=20.93 Aligned_cols=27 Identities=30% Similarity=0.544 Sum_probs=15.3
Q ss_pred ccccchhHHHHHHHHHHHHHHHhCCchhHHH
Q 046521 45 KNRNLSAAILVVVTVIWLLFEILEYNFITLL 75 (202)
Q Consensus 45 Rd~k~Sg~vl~~~t~~w~Lf~~~~ys~iSlv 75 (202)
|+|+.-|..|+++++ ..|-+ +|+.|++
T Consensus 18 K~KN~l~i~F~~~t~--~VFGw--FtimTii 44 (52)
T PF10958_consen 18 KNKNFLGIGFALVTV--AVFGW--FTIMTII 44 (52)
T ss_pred HHhhHHHHHHHHHHH--HHHHH--HHHHHHH
Confidence 667777777766665 34444 2444444
Done!