Query 046521
Match_columns 202
No_of_seqs 107 out of 352
Neff 5.2
Searched_HMMs 29240
Date Mon Mar 25 22:54:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046521.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046521hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ko2_A Reticulon-4; NOGO, memb 98.0 3.6E-07 1.2E-11 66.7 -2.6 57 85-141 12-79 (79)
2 2g31_A Reticulon-4; NOGO, heli 96.9 9.3E-06 3.2E-10 56.2 -5.8 47 89-135 3-60 (60)
3 2knc_A Integrin alpha-IIB; tra 28.7 84 0.0029 20.8 4.2 32 71-104 16-47 (54)
4 2l8s_A Integrin alpha-1; trans 26.4 1E+02 0.0035 20.4 4.3 31 71-103 13-43 (54)
5 4hfx_A Transcription elongatio 18.6 63 0.0022 23.8 2.2 22 180-201 68-89 (97)
6 4dxw_A Navrh, ION transport pr 17.7 1.5E+02 0.0051 23.4 4.5 54 75-141 133-187 (229)
7 2k1a_A Integrin alpha-IIB; sin 17.4 2E+02 0.0068 17.9 4.1 28 72-101 15-42 (42)
8 4f4l_A ION transport protein; 13.9 52 0.0018 24.0 0.7 49 76-137 7-56 (112)
9 4g8t_A Glucarate dehydratase; 11.0 93 0.0032 28.1 1.6 16 27-42 148-163 (464)
10 2bwb_A Ubiquitin-like protein 8.5 1.6E+02 0.0054 18.3 1.5 13 184-196 5-17 (46)
No 1
>2ko2_A Reticulon-4; NOGO, membrane protein, peripheral, DPC micelle, myelin INHI endoplasmic reticulum, membrane, phosphoprotein, transmembr; NMR {Mus musculus}
Probab=97.95 E-value=3.6e-07 Score=66.68 Aligned_cols=57 Identities=16% Similarity=0.160 Sum_probs=51.5
Q ss_pred HHHHHHHHhcccCCCCCCCC-------ceeechHHHH----HHHHHHHHHHHHhhhhccccCHHHHHH
Q 046521 85 TLFIWSKAAGLIPMSPPTVD-------EIRLSDRTCT----SLFANVNCLLTKFYDISCGENLKLYIL 141 (202)
Q Consensus 85 ~lFi~s~~~~~~~~~~p~~p-------~i~lsee~~~----~~~~~iN~~l~~l~~l~~g~d~~~~lk 141 (202)
.+.+|+++.+.++|++..+| |+.+|+|.++ .+..++|+++..+|+++++||+.+|+|
T Consensus 12 sfRiYk~vlqavqKtd~~hPFk~YLd~Di~ls~E~~~~~~~~~v~~in~~l~~LRrLfLVedlvDSLK 79 (79)
T 2ko2_A 12 GMRIYKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNSTIKELRRLFLVDDLVDSLK 79 (79)
T ss_dssp -CTHHHHTHHHHHCTTTTCCSHHHHHHHHHHTTCHHHHHHHCTTTHHHHHHHHHHHHHHHTCTTGGGC
T ss_pred HHHHHHHHHHHHHhCCCCCCccccccccccCCHHHHHHHHHHHHHHHHHHHHHHhHHhhcccHHHhcC
Confidence 34589999999999999999 9999999998 777889999999999999999999876
No 2
>2g31_A Reticulon-4; NOGO, helix, signaling protein; NMR {Homo sapiens} PDB: 2jv5_A
Probab=96.93 E-value=9.3e-06 Score=56.21 Aligned_cols=47 Identities=17% Similarity=0.277 Sum_probs=40.7
Q ss_pred HHHHhcccCCCCCCCC-------ceeechHHHH----HHHHHHHHHHHHhhhhccccC
Q 046521 89 WSKAAGLIPMSPPTVD-------EIRLSDRTCT----SLFANVNCLLTKFYDISCGEN 135 (202)
Q Consensus 89 ~s~~~~~~~~~~p~~p-------~i~lsee~~~----~~~~~iN~~l~~l~~l~~g~d 135 (202)
|.++.+.++|++..+| |+.+|+|.++ .+..++|+++..+|+++++||
T Consensus 3 Yk~vlqavqKt~~~hPFk~yLd~di~ls~e~~~~~~~~~v~~in~~l~~lrrLfLVed 60 (60)
T 2g31_A 3 YKGVIQAIQKSDEGHPFRAYLESEVAISEELVQKYSNSALGHVNCTIKELRRLFLVDD 60 (60)
T ss_dssp CCTTTTHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHGGGTCHHHHHHHHTSSCTTC
T ss_pred HHHHHHHHHhCCCCCCchhccccCcCCCHHHHHHHHHHHHHHHHHHHHHHhHhhccCC
Confidence 4556677788888888 9999999999 777889999999999999987
No 3
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=28.67 E-value=84 Score=20.75 Aligned_cols=32 Identities=19% Similarity=0.554 Sum_probs=21.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCC
Q 046521 71 FITLLCYFLCFIMITLFIWSKAAGLIPMSPPTVD 104 (202)
Q Consensus 71 ~iSlv~~~ll~~l~~lFi~s~~~~~~~~~~p~~p 104 (202)
++|+++-++++++++..+|+ .++++|..|+..
T Consensus 16 i~svl~GLllL~li~~~LwK--~GFFkR~~~~~~ 47 (54)
T 2knc_A 16 LVGVLGGLLLLTILVLAMWK--VGFFKRNRPPLE 47 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHTTTTCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCcccCCCCCcc
Confidence 35666666676777766774 478888766543
No 4
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=26.44 E-value=1e+02 Score=20.40 Aligned_cols=31 Identities=13% Similarity=0.418 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhcccCCCCCCC
Q 046521 71 FITLLCYFLCFIMITLFIWSKAAGLIPMSPPTV 103 (202)
Q Consensus 71 ~iSlv~~~ll~~l~~lFi~s~~~~~~~~~~p~~ 103 (202)
++|+++-++++++++..+|+ .++++|..|+.
T Consensus 13 i~svl~GLLLL~Lii~~LwK--~GFFKR~~~~~ 43 (54)
T 2l8s_A 13 LLSAFAGLLLLMLLILALWK--IGFFKRPLKKK 43 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--HHHTTSCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHH--cCcccCCCcch
Confidence 35666667777777766774 47888876543
No 5
>4hfx_A Transcription elongation factor B polypeptide 3; structural genomics, PSI-biology, northeast structural genom consortium, NESG; 2.54A {Homo sapiens}
Probab=18.62 E-value=63 Score=23.76 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=18.4
Q ss_pred hHHHhhchHHHHHHHHHHhhcC
Q 046521 180 PKFLTRFQGHLLKKRSICEQGI 201 (202)
Q Consensus 180 P~~Yekyq~~ID~~~~~~~~~~ 201 (202)
=-+|.+++++-|+.+..+.++|
T Consensus 68 RelY~rl~~ere~kL~~lT~~I 89 (97)
T 4hfx_A 68 REMYLRLQDAREQRLRVLTKNI 89 (97)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 4589999999999999988877
No 6
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=17.72 E-value=1.5e+02 Score=23.37 Aligned_cols=54 Identities=15% Similarity=0.306 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHH-hcccCCCCCCCCceeechHHHHHHHHHHHHHHHHhhhhccccCHHHHHH
Q 046521 75 LCYFLCFIMITLFIWSKA-AGLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLKLYIL 141 (202)
Q Consensus 75 v~~~ll~~l~~lFi~s~~-~~~~~~~~p~~p~i~lsee~~~~~~~~iN~~l~~l~~l~~g~d~~~~lk 141 (202)
+.++++++++..++++.+ .++++..+|.. + +.+-.+.-.+.++.+|+||.+...
T Consensus 133 l~~~~~~l~~~~~ifa~~g~~lf~~~~~~~--F-----------~~~~~a~~~lf~~~t~~~w~~i~~ 187 (229)
T 4dxw_A 133 VFFVSLLLFIILYIYATMGAILFGNDDPSR--W-----------GDLGISLITLFQVLTLSSWETVML 187 (229)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTTSCTT--T-----------SSHHHHHHHHHHHHTTSSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccc--c-----------cCHHHHHHHHHHHHccCCHHHHHH
Confidence 334445555556677765 46666655421 1 123345556778999999987654
No 7
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=17.35 E-value=2e+02 Score=17.89 Aligned_cols=28 Identities=21% Similarity=0.554 Sum_probs=17.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcccCCCCC
Q 046521 72 ITLLCYFLCFIMITLFIWSKAAGLIPMSPP 101 (202)
Q Consensus 72 iSlv~~~ll~~l~~lFi~s~~~~~~~~~~p 101 (202)
+|+++-++++++++..+|+ .++++|..|
T Consensus 15 ~s~l~GLllL~li~~~LwK--~GFFkR~~~ 42 (42)
T 2k1a_A 15 VGVLGGLLLLTILVLAMWK--VGFFKRNRP 42 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHH--TTTTCCCCC
T ss_pred HHHHHHHHHHHHHHHHHHH--cCcccCCCC
Confidence 4566666666666666663 477777653
No 8
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=13.89 E-value=52 Score=23.99 Aligned_cols=49 Identities=12% Similarity=0.213 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHHHHH-hcccCCCCCCCCceeechHHHHHHHHHHHHHHHHhhhhccccCHH
Q 046521 76 CYFLCFIMITLFIWSKA-AGLIPMSPPTVDEIRLSDRTCTSLFANVNCLLTKFYDISCGENLK 137 (202)
Q Consensus 76 ~~~ll~~l~~lFi~s~~-~~~~~~~~p~~p~i~lsee~~~~~~~~iN~~l~~l~~l~~g~d~~ 137 (202)
+++++++++..++++.+ .++++...|. - ...+-.+.-.+.++.++|||.
T Consensus 7 ~nv~~ll~l~~~ifAi~G~~lFg~~~~~---------~----F~~~~~s~ltLF~i~T~e~W~ 56 (112)
T 4f4l_A 7 GSVAALLTVVFYIAAVMATNLYGATFPE---------W----FGDLSKSLYTLFQVMTLESWS 56 (112)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHTTTCHH---------H----HSSHHHHHHHHHHHHTTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCccc---------c----ccCHHHHHHHHHHHHHccccH
Confidence 44455555666677766 4556544321 1 123344555677888899885
No 9
>4g8t_A Glucarate dehydratase; enolase, enzyme function INI EFI, structural genomics, lyase; 1.70A {Actinobacillus succinogenes} PDB: 1ec7_A 1ec8_A* 1ec9_A* 1ecq_A* 1jdf_A* 3pwi_A* 1jct_A* 3pwg_A* 1bqg_A
Probab=10.98 E-value=93 Score=28.11 Aligned_cols=16 Identities=25% Similarity=0.488 Sum_probs=13.2
Q ss_pred CccccccCCCceeeee
Q 046521 27 RPLHDILGGGTVADML 42 (202)
Q Consensus 27 ~~~h~~LGgg~vaDlL 42 (202)
.|+|++||||++.|-+
T Consensus 148 ~Pv~~LLGgG~~Rd~V 163 (464)
T 4g8t_A 148 VTVASLLGDGQQRDAV 163 (464)
T ss_dssp SBTGGGSTTSCCCSEE
T ss_pred CcHHHHhCCCCCCceE
Confidence 5899999998887654
No 10
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=8.46 E-value=1.6e+02 Score=18.25 Aligned_cols=13 Identities=15% Similarity=0.404 Sum_probs=11.1
Q ss_pred hhchHHHHHHHHH
Q 046521 184 TRFQGHLLKKRSI 196 (202)
Q Consensus 184 ekyq~~ID~~~~~ 196 (202)
++|+++|++..+|
T Consensus 5 ~~~~~~i~~L~~M 17 (46)
T 2bwb_A 5 ERYEHQLRQLNDM 17 (46)
T ss_dssp HHTHHHHHHHHHT
T ss_pred HHHHHHHHHHHHc
Confidence 7899999988876
Done!