Query 046521
Match_columns 202
No_of_seqs 107 out of 352
Neff 5.2
Searched_HMMs 13730
Date Mon Mar 25 22:54:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046521.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046521hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1nvpb_ a.32.1.1 (B:) Large ch 10.1 97 0.0071 18.0 2.5 19 178-199 1-19 (43)
2 d2axtl1 f.23.31.1 (L:1-37) Pho 9.5 84 0.0061 17.7 2.0 21 165-186 14-34 (37)
3 d1au1a_ a.26.1.3 (A:) Interfer 8.7 1.6E+02 0.012 21.3 4.0 41 94-134 22-73 (166)
4 d1z8ua1 a.7.11.1 (A:2-91) Alph 6.8 2.1E+02 0.015 18.9 3.4 27 108-134 31-58 (90)
5 d1wb8a1 a.2.11.1 (A:4-92) Fe s 6.7 2.5E+02 0.018 18.0 3.9 35 96-130 4-52 (89)
6 d1i5za1 a.4.5.4 (A:138-206) Ca 6.0 2.8E+02 0.02 16.1 4.5 26 105-130 27-56 (69)
7 d1b5ea_ d.117.1.1 (A:) dCMP hy 5.9 65 0.0047 25.0 0.4 21 181-201 216-236 (241)
8 d2yw6a1 a.25.1.1 (A:17-157) Do 5.9 1.4E+02 0.01 20.0 2.3 21 179-199 38-58 (141)
9 d2f2ac1 a.137.12.1 (C:3-94) Gl 5.9 2E+02 0.014 18.2 2.9 27 105-131 15-41 (92)
10 d2gsva1 a.23.7.1 (A:3-69) Hypo 5.7 1.3E+02 0.0095 18.9 1.7 17 176-192 2-18 (67)
No 1
>d1nvpb_ a.32.1.1 (B:) Large chain TOA1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.09 E-value=97 Score=18.05 Aligned_cols=19 Identities=11% Similarity=0.184 Sum_probs=12.3
Q ss_pred hhhHHHhhchHHHHHHHHHHhh
Q 046521 178 SIPKFLTRFQGHLLKKRSICEQ 199 (202)
Q Consensus 178 TlP~~Yekyq~~ID~~~~~~~~ 199 (202)
|+|++|+ .-|+..++.+|+
T Consensus 1 tV~kvY~---~VIedVI~~vR~ 19 (43)
T d1nvpb_ 1 TVPKLYR---SVIEDVINDVRD 19 (43)
T ss_dssp CHHHHHH---HHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHHHHHH
Confidence 5677765 566666666654
No 2
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=9.55 E-value=84 Score=17.70 Aligned_cols=21 Identities=10% Similarity=0.055 Sum_probs=15.7
Q ss_pred hhHHHHhhhhhhhhhhHHHhhc
Q 046521 165 LKVLKTCGGCLTISIPKFLTRF 186 (202)
Q Consensus 165 lTLl~i~~v~~~fTlP~~Yeky 186 (202)
-|-+|.|.+ ..|.+-+++..|
T Consensus 14 rtsLy~GlL-lifvl~vLFssY 34 (37)
T d2axtl1 14 RTSLYLGLL-LILVLALLFSSY 34 (37)
T ss_dssp HHHHHHHHH-HHHHHHHHHHHH
T ss_pred hhhHHHHHH-HHHHHHHHHHHH
Confidence 366788888 888887777665
No 3
>d1au1a_ a.26.1.3 (A:) Interferon-beta {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.65 E-value=1.6e+02 Score=21.34 Aligned_cols=41 Identities=5% Similarity=-0.018 Sum_probs=25.4
Q ss_pred cccCCCCCCCC----ceeechHHHH-------HHHHHHHHHHHHhhhhcccc
Q 046521 94 GLIPMSPPTVD----EIRLSDRTCT-------SLFANVNCLLTKFYDISCGE 134 (202)
Q Consensus 94 ~~~~~~~p~~p----~i~lsee~~~-------~~~~~iN~~l~~l~~l~~g~ 134 (202)
+-+++++|+.+ |+.+|+|... .+...+...+.....++..+
T Consensus 22 ~~M~~~~~~CLkdr~dF~fP~e~~~~~q~qk~~a~~v~~emlqqif~LF~~~ 73 (166)
T d1au1a_ 22 WQLNGRLEYCLKDRMNFDIPEEIKQLQQFQKEDAALTIYEMLQNIFAIFRQD 73 (166)
T ss_dssp TTSCCCCSGGGGGCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHHHTSC
T ss_pred HHccCCChhhhhcCcCCCCCHHHhccchhhHHHHHHHHHHHHHHHHHHHcCC
Confidence 44555555433 8999999887 44445555666666666554
No 4
>d1z8ua1 a.7.11.1 (A:2-91) Alpha-hemoglobin stabilizing protein AHSP {Human (Homo sapiens) [TaxId: 9606]}
Probab=6.81 E-value=2.1e+02 Score=18.90 Aligned_cols=27 Identities=15% Similarity=0.199 Sum_probs=23.6
Q ss_pred echHHHH-HHHHHHHHHHHHhhhhcccc
Q 046521 108 LSDRTCT-SLFANVNCLLTKFYDISCGE 134 (202)
Q Consensus 108 lsee~~~-~~~~~iN~~l~~l~~l~~g~ 134 (202)
+|||... .+..++|-.++.++.-..|+
T Consensus 31 iseedMvtvV~DWvn~Yinyy~~~~~Ge 58 (90)
T d1z8ua1 31 VSEEDMVTVVEDWMNFYINYYRQQVTGE 58 (90)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTTCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 7788777 88899999999999999886
No 5
>d1wb8a1 a.2.11.1 (A:4-92) Fe superoxide dismutase (FeSOD) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=6.72 E-value=2.5e+02 Score=17.95 Aligned_cols=35 Identities=17% Similarity=0.236 Sum_probs=24.6
Q ss_pred cCCCCCCCC------ceeechHHHH--------HHHHHHHHHHHHhhhh
Q 046521 96 IPMSPPTVD------EIRLSDRTCT--------SLFANVNCLLTKFYDI 130 (202)
Q Consensus 96 ~~~~~p~~p------~i~lsee~~~--------~~~~~iN~~l~~l~~l 130 (202)
.+-+-|+.| |=.+|+|+.+ .=+..+|.++......
T Consensus 4 ~~f~Lp~LPY~~~aLeP~Is~~Tm~~Hh~kHH~~YV~~lN~~l~~~~~~ 52 (89)
T d1wb8a1 4 KKYELPPLPYKIDALEPYISKDIIDVHYNGHHKGYVNGANSLLERLEKV 52 (89)
T ss_dssp CCCCCCCCSSCTTTTTTTSCHHHHHHHHHTHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCCCCCccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567777 3379999988 6677788888766543
No 6
>d1i5za1 a.4.5.4 (A:138-206) Catabolite gene activator protein (CAP), C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=6.02 E-value=2.8e+02 Score=16.15 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=19.9
Q ss_pred ceeechHHHH----HHHHHHHHHHHHhhhh
Q 046521 105 EIRLSDRTCT----SLFANVNCLLTKFYDI 130 (202)
Q Consensus 105 ~i~lsee~~~----~~~~~iN~~l~~l~~l 130 (202)
++.++++... .-++.+|+.++.+++-
T Consensus 27 ~l~lt~~~lA~~~G~sRetvsr~L~~l~~~ 56 (69)
T d1i5za1 27 QIKITRQEIGQIVGCSRETVGRILKMLEDQ 56 (69)
T ss_dssp EEECCHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred ecCCCHHHHHHHHCCCHHHHHHHHHHHHHC
Confidence 6788887776 5577888888888764
No 7
>d1b5ea_ d.117.1.1 (A:) dCMP hydroxymethylase {Bacteriophage T4 [TaxId: 10665]}
Probab=5.95 E-value=65 Score=25.02 Aligned_cols=21 Identities=14% Similarity=-0.072 Sum_probs=18.6
Q ss_pred HHHhhchHHHHHHHHHHhhcC
Q 046521 181 KFLTRFQGHLLKKRSICEQGI 201 (202)
Q Consensus 181 ~~Yekyq~~ID~~~~~~~~~~ 201 (202)
=+||++-+++|++++..+++|
T Consensus 216 HIY~nh~~~v~~~~~~~~~~~ 236 (241)
T d1b5ea_ 216 HVYSRHFYLVDHWWKTGETHI 236 (241)
T ss_dssp EEEGGGHHHHHHHHHHCCSCC
T ss_pred EEcHHHHHHHHHHHHhccccc
Confidence 469999999999999888876
No 8
>d2yw6a1 a.25.1.1 (A:17-157) Dodecameric ferritin homolog {Mycobacterium smegmatis [TaxId: 1772]}
Probab=5.94 E-value=1.4e+02 Score=19.99 Aligned_cols=21 Identities=10% Similarity=-0.061 Sum_probs=17.5
Q ss_pred hhHHHhhchHHHHHHHHHHhh
Q 046521 179 IPKFLTRFQGHLLKKRSICEQ 199 (202)
Q Consensus 179 lP~~Yekyq~~ID~~~~~~~~ 199 (202)
.-.+|+.-++++|...+.+++
T Consensus 38 fee~y~~~~~~~D~iAERi~~ 58 (141)
T d2yw6a1 38 IDPQVELVRGYADEVAERIAT 58 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 467789999999999988875
No 9
>d2f2ac1 a.137.12.1 (C:3-94) Glu-tRNAGln amidotransferase C subunit, GatC {Staphylococcus aureus [TaxId: 1280]}
Probab=5.89 E-value=2e+02 Score=18.20 Aligned_cols=27 Identities=7% Similarity=0.127 Sum_probs=22.0
Q ss_pred ceeechHHHHHHHHHHHHHHHHhhhhc
Q 046521 105 EIRLSDRTCTSLFANVNCLLTKFYDIS 131 (202)
Q Consensus 105 ~i~lsee~~~~~~~~iN~~l~~l~~l~ 131 (202)
.++++|+....+...+|..+..+..+-
T Consensus 15 rL~l~deE~~~~~~~l~~Il~~~~~L~ 41 (92)
T d2f2ac1 15 RLQISPEETEEMANTLESILDFAKQND 41 (92)
T ss_dssp TCCCCTTHHHHHHHHHHHHHHHHGGGG
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 467888888889999999998887664
No 10
>d2gsva1 a.23.7.1 (A:3-69) Hypothetical protein YvfG {Bacillus subtilis [TaxId: 1423]}
Probab=5.75 E-value=1.3e+02 Score=18.87 Aligned_cols=17 Identities=24% Similarity=0.542 Sum_probs=13.9
Q ss_pred hhhhhHHHhhchHHHHH
Q 046521 176 TISIPKFLTRFQGHLLK 192 (202)
Q Consensus 176 ~fTlP~~Yekyq~~ID~ 192 (202)
+||+|.+-|+++++|..
T Consensus 2 LFsv~~fi~Nf~~~i~m 18 (67)
T d2gsva1 2 LFSVPYFIENLKQHIEM 18 (67)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHh
Confidence 58999999988887753
Done!