BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046522
(115 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q94C60|SPT42_ARATH Transcription elongation factor SPT4 homolog 2 OS=Arabidopsis
thaliana GN=At5g63670 PE=2 SV=1
Length = 116
Score = 219 bits (557), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 99/115 (86%), Positives = 111/115 (96%)
Query: 1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60
MGSAPAQIPTSFGHELRACLRCRLVKTYDQFR++GCENCPFFKM+EDHER+V+ TTPNFN
Sbjct: 1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRDAGCENCPFFKMEEDHERIVEVTTPNFN 60
Query: 61 GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115
GIISVMDP+RSWAARWLRIG+F PGCYTLAVSE LPE++Q+LC++ERVQYV PKR
Sbjct: 61 GIISVMDPSRSWAARWLRIGKFAPGCYTLAVSEPLPEEMQHLCQEERVQYVLPKR 115
>sp|Q8LCQ3|SPT41_ARATH Transcription elongation factor SPT4 homolog 1 OS=Arabidopsis
thaliana GN=At5g08565 PE=2 SV=3
Length = 116
Score = 215 bits (547), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 97/115 (84%), Positives = 108/115 (93%)
Query: 1 MGSAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFN 60
MG APAQIPTSFGHELRACLRCRLVKTYDQFR+SGCENCPFFK+++DHER+VD TTPNFN
Sbjct: 1 MGEAPAQIPTSFGHELRACLRCRLVKTYDQFRDSGCENCPFFKIEDDHERIVDVTTPNFN 60
Query: 61 GIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115
GIIS+MDP RSWAARWLRIG+F PGCYTLAVSEALPE++Q +C+ RVQYVPPKR
Sbjct: 61 GIISMMDPRRSWAARWLRIGKFAPGCYTLAVSEALPEEMQFICQQARVQYVPPKR 115
>sp|Q5RFH5|SPT4H_PONAB Transcription elongation factor SPT4 OS=Pongo abelii GN=SUPT4H1
PE=3 SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
I++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 IAMMSPGDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|Q4R941|SPT4H_MACFA Transcription elongation factor SPT4 OS=Macaca fascicularis
GN=SUPT4H1 PE=3 SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
I++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|P63272|SPT4H_HUMAN Transcription elongation factor SPT4 OS=Homo sapiens GN=SUPT4H1
PE=1 SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
I++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|Q3SYX6|SPT4H_BOVIN Transcription elongation factor SPT4 OS=Bos taurus GN=SUPT4H1 PE=3
SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
I++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|P63271|SPT41_MOUSE Transcription elongation factor SPT4 1 OS=Mus musculus GN=Supt4h1
PE=2 SV=1
Length = 117
Score = 95.1 bits (235), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
I++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 IAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|Q9TVQ5|SPT4H_DROME Transcription elongation factor SPT4 OS=Drosophila melanogaster
GN=spt4 PE=1 SV=1
Length = 116
Score = 94.7 bits (234), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 5/91 (5%)
Query: 16 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAA 74
LRACL C LVK++DQF GCENC F +M + + V D T+ NF+GII++ PT SW A
Sbjct: 13 LRACLVCSLVKSFDQFETDGCENCEEFLRMKNNKDNVYDHTSNNFDGIIALTTPTDSWVA 72
Query: 75 RWLRIGRFVPGCYTLAVSEALPE----DLQN 101
+W R+ RF G Y ++VS LP+ D++N
Sbjct: 73 KWQRLSRFTRGIYAISVSGTLPQSTLRDMKN 103
>sp|Q5HZ97|SPT4H_XENLA Transcription elongation factor SPT4 OS=Xenopus laevis GN=supt4h1
PE=3 SV=1
Length = 117
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 45/108 (41%), Positives = 64/108 (59%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
+++M P SW ++W RI F PG Y ++V+ LP+ + + V Y
Sbjct: 61 VAMMSPDDSWVSKWQRITNFKPGVYAVSVTGRLPQGIVRELKSRGVVY 108
>sp|Q6DGQ0|SPT4H_DANRE Transcription elongation factor SPT4 OS=Danio rerio GN=supt4h1
PE=3 SV=1
Length = 117
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 43/90 (47%), Positives = 58/90 (64%), Gaps = 2/90 (2%)
Query: 8 IPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGIISVM 66
+P H LRACL C LVKT DQF GC+NC + +M + E V +CT+ +F+G+I++M
Sbjct: 6 VPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCESYLQMKGNREMVYECTSSSFDGVIAMM 64
Query: 67 DPTRSWAARWLRIGRFVPGCYTLAVSEALP 96
P SW A+W RIG F PG Y + V+ LP
Sbjct: 65 SPEDSWVAKWQRIGNFKPGVYAVTVTGRLP 94
>sp|Q7S743|SPT4_NEUCR Transcription elongation factor spt-4 OS=Neurospora crassa (strain
ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC
987) GN=spt-4 PE=3 SV=1
Length = 120
Score = 94.0 bits (232), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 40/98 (40%), Positives = 62/98 (63%), Gaps = 1/98 (1%)
Query: 16 LRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAA 74
LRAC+ C +V TY +FR+ GC NC F + +++ CT+ F GII++ +P +SW A
Sbjct: 14 LRACMVCSIVMTYARFRDEGCPNCEDFLHLQGSPDQIDSCTSQVFEGIITIANPQKSWVA 73
Query: 75 RWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
+W R+ +V G Y VS LP+D++ ED+ +QY+P
Sbjct: 74 KWQRLDGYVKGVYATKVSGQLPDDVRTTLEDDGIQYIP 111
>sp|Q4I5W5|SPT4_GIBZE Transcription elongation factor SPT4 OS=Gibberella zeae (strain
PH-1 / ATCC MYA-4620 / FGSC 9075 / NRRL 31084) GN=SPT4
PE=3 SV=2
Length = 123
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 2/112 (1%)
Query: 3 SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNG 61
S+ + T LRAC+ C +V T +F+ GC NC F + +++ CT+ F G
Sbjct: 2 SSSNYVTTGQARNLRACMICSIVMTSQRFQNEGCPNCEEFLHLQHSPDQIESCTSQVFEG 61
Query: 62 IISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE-RVQYVP 112
+I++ +PT+SW A++ R+ +VPG Y + VS LP+D+++ EDE R+QY+P
Sbjct: 62 VITLANPTKSWIAKYQRLDSYVPGMYAIKVSGQLPDDVRSTLEDEYRIQYIP 113
>sp|Q9Z199|SPT42_MOUSE Transcription elongation factor SPT4 2 OS=Mus musculus GN=Supt4h2
PE=2 SV=1
Length = 117
Score = 92.4 bits (228), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 44/108 (40%), Positives = 63/108 (58%), Gaps = 2/108 (1%)
Query: 4 APAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGI 62
A +P H LRACL C LVKT DQF GC+NC + +M + E V DCT+ +F+GI
Sbjct: 2 ALETVPKDLRH-LRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGI 60
Query: 63 ISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110
++M P SW ++W R+ F PG Y ++V+ LP+ + + V Y
Sbjct: 61 NAMMSPEDSWVSKWQRVSNFKPGVYAVSVTGRLPQGIVRELKSRGVAY 108
>sp|Q9TZ93|SPT4H_CAEEL Transcription elongation factor SPT4 OS=Caenorhabditis elegans
GN=spt-4 PE=3 SV=1
Length = 120
Score = 90.9 bits (224), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 5 PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGII 63
A +P LRACL C LVK+ + F++ GCENC + D E+V DCT+ N++G+I
Sbjct: 2 SASVPADL-RNLRACLLCSLVKSVESFQKEGCENCEDVLHLKGDEEKVYDCTSANYDGMI 60
Query: 64 SVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115
+ M SW +W ++ R V G Y ++VS LP ++ + + V+Y P +R
Sbjct: 61 AAMSNNESWVCKWQKMQRKVKGMYAISVSGVLPNNIVSELKSLGVRYKPNQR 112
>sp|Q628A6|SPT4H_CAEBR Transcription elongation factor SPT4 OS=Caenorhabditis briggsae
GN=spt-4 PE=3 SV=1
Length = 120
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 65/112 (58%), Gaps = 2/112 (1%)
Query: 5 PAQIPTSFGHELRACLRCRLVKTYDQFRESGCENC-PFFKMDEDHERVVDCTTPNFNGII 63
A IP+ LRACL C L+K+ D F+ GCENC + D E+V DCT+ N++G+I
Sbjct: 2 AASIPSDL-RNLRACLLCSLIKSVDAFQTDGCENCDEVLHLKGDEEKVYDCTSANYDGMI 60
Query: 64 SVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115
+ M SW +W ++ R V G Y ++VS +LP ++ + + V+Y +R
Sbjct: 61 AAMSNDDSWVCKWQKMQRRVKGIYAISVSGSLPSNVVSDLKSMGVRYKANQR 112
>sp|Q4WU00|SPT4_ASPFU Transcription elongation factor spt4 OS=Neosartorya fumigata
(strain ATCC MYA-4609 / Af293 / CBS 101355 / FGSC A1100)
GN=spt4 PE=3 SV=1
Length = 156
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 39/111 (35%), Positives = 65/111 (58%), Gaps = 1/111 (0%)
Query: 3 SAPAQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNG 61
S+ + S LRAC+ C LV+ + +F GC NC + +++ + +CT+ F G
Sbjct: 2 SSSYYVTPSQQRTLRACMVCSLVQLHSKFMRDGCPNCDNVLGLRGNNDAIQECTSQVFEG 61
Query: 62 IISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
+I++ DP+ SW ARW R+ +V G Y + V+ +LP+D+ ED V+Y+P
Sbjct: 62 LITLRDPSTSWVARWQRLEGYVAGTYAVKVTGSLPDDVITNLEDSGVRYIP 112
>sp|P0CR68|SPT4_CRYNJ Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=SPT4 PE=3 SV=1
Length = 113
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 9 PTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMD 67
P S ELRACL C ++++ + F GC NC +M ERV +CT+ ++G+I++++
Sbjct: 3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIE 62
Query: 68 PTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
P+ SW ARW RI + + G Y + V+ P+D+ + E Y P
Sbjct: 63 PSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRP 107
>sp|P0CR69|SPT4_CRYNB Transcription elongation factor SPT4 OS=Cryptococcus neoformans
var. neoformans serotype D (strain B-3501A) GN=SPT4 PE=3
SV=1
Length = 113
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/105 (36%), Positives = 61/105 (58%), Gaps = 1/105 (0%)
Query: 9 PTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMD 67
P S ELRACL C ++++ + F GC NC +M ERV +CT+ ++G+I++++
Sbjct: 3 PKSGRAELRACLVCSILQSTNDFLTQGCPNCEDILEMRGSAERVAECTSLLYDGMIAMIE 62
Query: 68 PTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
P+ SW ARW RI + + G Y + V+ P+D+ + E Y P
Sbjct: 63 PSESWVARWQRIDKRMRGIYAVRVTGRAPQDVIDAIEARGGVYRP 107
>sp|Q752J8|SPT4_ASHGO Transcription elongation factor SPT4 OS=Ashbya gossypii (strain
ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 76.6 bits (187), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 1/86 (1%)
Query: 17 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARW 76
RAC+ C +V+T ++F GC NC +E ++CT+P+F G++ + PT+SW A+W
Sbjct: 5 RACMLCGIVQTTNEFTRDGCPNCQGI-FEEASVSAIECTSPSFEGLVGMCKPTKSWVAKW 63
Query: 77 LRIGRFVPGCYTLAVSEALPEDLQNL 102
+ + ++VPG Y + V LP ++ +L
Sbjct: 64 ISVEQYVPGMYAIKVDGRLPVEVVDL 89
>sp|P81205|SPT4_KLULA Transcription elongation factor SPT4 OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=SPT4 PE=3 SV=1
Length = 102
Score = 75.5 bits (184), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 32/86 (37%), Positives = 52/86 (60%), Gaps = 1/86 (1%)
Query: 17 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARW 76
RAC+ C LV++ +F +GC NC +E V+CT+P+F G++ + P+RSW ARW
Sbjct: 5 RACMLCGLVQSTAEFNRNGCPNCQSI-FEEAGVSAVECTSPSFEGLVGMCKPSRSWVARW 63
Query: 77 LRIGRFVPGCYTLAVSEALPEDLQNL 102
+ I ++PG Y + + LP ++ L
Sbjct: 64 MSIDSYIPGMYAVKIDGRLPIEVTEL 89
>sp|Q6FMX1|SPT4_CANGA Transcription elongation factor SPT4 OS=Candida glabrata (strain
ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=SPT4 PE=3 SV=1
Length = 102
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 17 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARW 76
RAC+ C +V+T ++F GC NC +E ++CT+P+F G++ + PT+SW A+W
Sbjct: 5 RACMLCGIVQTTNEFGRVGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKW 63
Query: 77 LRIGRFVPGCYTLAVSEALPEDLQNL 102
L + +PG Y + V LP ++ L
Sbjct: 64 LSVDANIPGMYAVKVDGRLPPEVVEL 89
>sp|Q5AK73|SPT4_CANAL Transcription elongation factor SPT4 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=SPT4 PE=3 SV=1
Length = 112
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Query: 17 RACLRCRLVKTYDQFRESGCENCP--FFKMDEDHERVVDCTTPNFNGIISVMDPTR-SWA 73
RAC+ C +++ F + GC NC D+++V DCT+P+F G++++ + + SW
Sbjct: 7 RACMLCGIIQPMKSFIDYGCPNCESLLHYQYNDNKQVQDCTSPSFEGLVALGEDNKGSWV 66
Query: 74 ARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
ARWLRI F G Y + V+ LP + E++ V Y P
Sbjct: 67 ARWLRIDSFTAGLYAVKVNGKLPPSIIAELEEQNVIYRP 105
>sp|P32914|SPT4_YEAST Transcription elongation factor SPT4 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=SPT4 PE=1 SV=1
Length = 102
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 50/86 (58%), Gaps = 1/86 (1%)
Query: 17 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARW 76
RAC+ C +V+T ++F GC NC +E ++CT+P+F G++ + PT+SW A+W
Sbjct: 5 RACMLCGIVQTTNEFNRDGCPNCQGI-FEEAGVSTMECTSPSFEGLVGMCKPTKSWVAKW 63
Query: 77 LRIGRFVPGCYTLAVSEALPEDLQNL 102
L + + G Y + V LP ++ L
Sbjct: 64 LSVDHSIAGMYAIKVDGRLPAEVVEL 89
>sp|Q6BHA5|SPT4_DEBHA Transcription elongation factor SPT4 OS=Debaryomyces hansenii
(strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 /
IGC 2968) GN=SPT4 PE=3 SV=2
Length = 111
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 58/99 (58%), Gaps = 4/99 (4%)
Query: 17 RACLRCRLVKTYDQFRESGCENCP---FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWA 73
RAC+ C +++ + +F + GC NC F+ +ED++ V DCT+P+F G++++ D T+S
Sbjct: 7 RACMLCGIIQPFRKFVDFGCPNCESVLHFQDNEDNQ-VQDCTSPSFEGLVALGDETKSPG 65
Query: 74 ARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
LRI FV G Y + ++ LP + D+ + Y P
Sbjct: 66 GERLRIDSFVAGLYAVKINGKLPPHIIGDLADQNISYRP 104
>sp|Q9P7K8|SPT4_SCHPO Transcription elongation factor spt4 OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=spt4 PE=1 SV=1
Length = 105
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 17 RACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARW 76
RACL C +V + F GC N + + V T+P F GI+++M PT SW ARW
Sbjct: 10 RACLICGIVLPHSVFANKGCPN-------DGVDDVETFTSPVFEGIMAMMSPTESWVARW 62
Query: 77 LRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQYVP 112
RI F PG Y V L ED+ + Y P
Sbjct: 63 QRIDTFTPGIYATRVQGVLNEDVVESLRRRGINYRP 98
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.139 0.460
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 47,093,355
Number of Sequences: 539616
Number of extensions: 1717477
Number of successful extensions: 4066
Number of sequences better than 100.0: 28
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 4017
Number of HSP's gapped (non-prelim): 28
length of query: 115
length of database: 191,569,459
effective HSP length: 83
effective length of query: 32
effective length of database: 146,781,331
effective search space: 4697002592
effective search space used: 4697002592
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 55 (25.8 bits)