Query 046522
Match_columns 115
No_of_seqs 100 out of 280
Neff 4.7
Searched_HMMs 29240
Date Mon Mar 25 22:55:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h7h_A Transcription elongatio 100.0 1E-54 3.5E-59 314.5 5.2 109 6-115 7-116 (120)
2 2exu_A Transcription initiatio 100.0 1.8E-42 6.3E-47 267.6 2.5 96 14-115 2-98 (200)
3 3lpe_B DNA-directed RNA polyme 100.0 4.8E-32 1.6E-36 174.9 3.8 59 16-93 1-59 (59)
4 3p8b_A DNA-directed RNA polyme 100.0 9.1E-31 3.1E-35 178.2 5.7 69 6-92 13-81 (81)
5 1ryq_A DNA-directed RNA polyme 100.0 2.9E-30 1E-34 171.2 5.6 62 13-92 8-69 (69)
6 4ayb_P DNA-directed RNA polyme 85.1 0.41 1.4E-05 29.2 1.7 26 16-41 3-31 (48)
7 6rxn_A Rubredoxin; electron tr 76.2 1 3.5E-05 26.9 1.3 25 17-41 5-38 (46)
8 2apo_B Ribosome biogenesis pro 75.2 1.3 4.3E-05 28.0 1.5 21 15-40 5-25 (60)
9 3a43_A HYPD, hydrogenase nicke 74.7 1.7 5.7E-05 30.8 2.3 15 16-30 70-84 (139)
10 1e8j_A Rubredoxin; iron-sulfur 74.5 1.3 4.4E-05 26.9 1.4 13 17-29 4-16 (52)
11 3na7_A HP0958; flagellar bioge 73.1 0.8 2.7E-05 35.0 0.3 25 16-40 198-229 (256)
12 1faa_A Thioredoxin F; electron 69.7 0.73 2.5E-05 29.5 -0.5 69 30-105 43-121 (124)
13 3pwf_A Rubrerythrin; non heme 68.2 1.7 5.8E-05 31.8 1.1 24 16-41 138-161 (170)
14 1lko_A Rubrerythrin all-iron(I 67.7 1.5 5.2E-05 32.3 0.8 25 16-41 155-179 (191)
15 1twf_L ABC10-alpha, DNA-direct 67.6 2.9 0.0001 26.8 2.0 28 14-41 26-53 (70)
16 3vdp_A Recombination protein R 67.4 1.7 5.9E-05 33.5 1.1 54 15-90 67-121 (212)
17 2v3b_B Rubredoxin 2, rubredoxi 66.3 2.9 9.9E-05 25.6 1.7 25 17-41 4-44 (55)
18 2aus_D NOP10, ribosome biogene 66.1 2.3 8E-05 26.8 1.3 22 14-40 3-24 (60)
19 2kn9_A Rubredoxin; metalloprot 65.4 2.3 7.7E-05 28.2 1.2 27 15-41 26-68 (81)
20 3die_A Thioredoxin, TRX; elect 64.2 1.6 5.5E-05 26.6 0.3 69 30-105 25-104 (106)
21 2pu9_C TRX-F, thioredoxin F-ty 62.3 1.2 4.2E-05 27.8 -0.6 69 30-105 30-108 (111)
22 1yk4_A Rubredoxin, RD; electro 62.2 3.1 0.00011 25.1 1.3 13 17-29 3-15 (52)
23 2kdx_A HYPA, hydrogenase/ureas 62.0 3.2 0.00011 28.2 1.5 26 15-41 72-98 (119)
24 3gnj_A Thioredoxin domain prot 61.9 2.1 7.3E-05 26.3 0.5 69 30-105 28-107 (111)
25 3h0g_L DNA-directed RNA polyme 61.3 5.1 0.00017 25.4 2.2 26 15-40 20-45 (63)
26 2hl7_A Cytochrome C-type bioge 61.0 2 7E-05 28.5 0.3 39 70-113 41-82 (84)
27 1dx8_A Rubredoxin; electron tr 58.5 4.3 0.00015 26.0 1.5 26 16-41 7-48 (70)
28 1s24_A Rubredoxin 2; electron 58.0 3.6 0.00012 27.6 1.1 26 16-41 35-76 (87)
29 2gml_A Ribosomal large subunit 57.0 19 0.00064 27.6 5.2 49 60-110 58-106 (237)
30 1vdd_A Recombination protein R 56.6 1.9 6.5E-05 33.6 -0.4 54 15-90 53-107 (228)
31 2j23_A Thioredoxin; immune pro 56.3 6.4 0.00022 25.1 2.2 69 30-105 39-118 (121)
32 2kw0_A CCMH protein; oxidoredu 55.4 2.4 8.3E-05 28.6 -0.1 39 70-113 38-79 (90)
33 1dl6_A Transcription factor II 55.2 5.6 0.00019 24.2 1.6 41 14-61 9-53 (58)
34 1wjk_A C330018D20RIK protein; 52.7 7.9 0.00027 24.7 2.1 65 30-105 21-93 (100)
35 1dby_A Chloroplast thioredoxin 51.9 4.7 0.00016 24.6 0.9 69 30-105 25-104 (107)
36 1yuz_A Nigerythrin; rubrythrin 51.8 5.1 0.00018 29.8 1.2 25 15-41 170-194 (202)
37 4rxn_A Rubredoxin; electron tr 51.3 6 0.00021 24.2 1.3 12 17-28 4-15 (54)
38 3f3q_A Thioredoxin-1; His TAG, 49.9 4.7 0.00016 25.3 0.7 69 30-105 30-107 (109)
39 3dh3_A Ribosomal large subunit 48.1 41 0.0014 26.2 6.0 49 60-110 111-159 (290)
40 2zjr_Z 50S ribosomal protein L 47.4 7.3 0.00025 24.2 1.3 24 14-41 28-51 (60)
41 2dkt_A Ring finger and CHY zin 47.0 13 0.00044 26.9 2.7 23 14-40 56-78 (143)
42 3hxs_A Thioredoxin, TRXP; elec 43.8 16 0.00054 23.5 2.6 69 30-105 57-136 (141)
43 2xc2_A Thioredoxinn; oxidoredu 43.2 6.8 0.00023 24.6 0.6 69 30-105 39-115 (117)
44 2gmg_A Hypothetical protein PF 42.9 11 0.00037 26.1 1.7 24 16-40 67-91 (105)
45 3m9j_A Thioredoxin; oxidoreduc 41.6 7 0.00024 23.6 0.5 69 30-105 26-103 (105)
46 2oml_A Ribosomal large subunit 40.8 94 0.0032 22.0 6.6 43 60-104 55-98 (189)
47 2oe3_A Thioredoxin-3; electron 40.4 9.5 0.00032 24.3 1.0 69 30-105 36-113 (114)
48 3cxg_A Putative thioredoxin; m 40.3 20 0.00068 23.4 2.6 69 30-106 46-127 (133)
49 2yj7_A LPBCA thioredoxin; oxid 46.4 5.9 0.0002 23.6 0.0 53 30-89 25-80 (106)
50 3qfa_C Thioredoxin; protein-pr 40.1 12 0.00039 23.8 1.4 69 30-105 37-114 (116)
51 1thx_A Thioredoxin, thioredoxi 40.1 14 0.00047 22.5 1.7 69 30-105 31-110 (115)
52 2lcq_A Putative toxin VAPC6; P 39.6 9.7 0.00033 26.8 1.1 26 14-40 130-155 (165)
53 2fsv_C NAD(P) transhydrogenase 39.6 24 0.00083 27.0 3.3 40 71-111 67-107 (203)
54 2bzw_B BCL2-antagonist of cell 39.5 14 0.00048 19.8 1.4 11 68-78 2-12 (27)
55 2fcj_A Small toprim domain pro 39.3 25 0.00085 24.4 3.1 52 57-109 48-107 (119)
56 2l5l_A Thioredoxin; structural 39.1 7.6 0.00026 25.3 0.4 70 30-106 44-124 (136)
57 1djl_A Transhydrogenase DIII; 39.0 25 0.00086 27.0 3.3 40 71-111 66-106 (207)
58 3hz4_A Thioredoxin; NYSGXRC, P 37.8 6.3 0.00021 25.9 -0.2 69 30-104 30-108 (140)
59 3iyk_G VP2; icosahedral virus; 37.1 16 0.00054 32.1 2.1 27 80-106 232-258 (600)
60 2con_A RUH-035 protein, NIN on 36.4 27 0.00094 22.8 2.8 26 14-41 13-38 (79)
61 3tco_A Thioredoxin (TRXA-1); d 36.2 8.6 0.00029 23.2 0.3 69 30-105 27-106 (109)
62 3abi_A Putative uncharacterize 36.2 10 0.00036 29.4 0.8 39 73-111 322-363 (365)
63 3d6i_A Monothiol glutaredoxin- 36.1 17 0.00059 22.2 1.7 69 30-105 27-106 (112)
64 2vlu_A Thioredoxin, thioredoxi 36.0 10 0.00035 23.7 0.6 69 30-105 40-117 (122)
65 2dml_A Protein disulfide-isome 35.8 33 0.0011 21.5 3.1 69 30-105 41-121 (130)
66 1gh9_A 8.3 kDa protein (gene M 35.4 7.5 0.00026 24.9 -0.1 21 18-40 6-27 (71)
67 1ep7_A Thioredoxin CH1, H-type 34.3 12 0.00041 22.9 0.7 69 30-105 30-108 (112)
68 2olw_A Ribosomal large subunit 34.2 1.3E+02 0.0045 21.9 6.6 43 60-104 83-126 (217)
69 1xwb_A Thioredoxin; dimerizati 34.1 12 0.0004 22.5 0.7 69 30-105 26-104 (106)
70 1mek_A Protein disulfide isome 33.3 31 0.0011 20.9 2.6 73 30-106 30-115 (120)
71 1pno_A NAD(P) transhydrogenase 33.2 35 0.0012 25.7 3.3 40 71-111 44-84 (180)
72 2l6c_A Thioredoxin; oxidoreduc 33.1 18 0.00061 22.5 1.4 70 30-106 25-104 (110)
73 3v2d_5 50S ribosomal protein L 32.6 18 0.00062 22.4 1.4 22 15-40 29-50 (60)
74 2voc_A Thioredoxin; electron t 32.2 33 0.0011 21.2 2.6 70 30-106 23-103 (112)
75 1ilo_A Conserved hypothetical 31.9 7 0.00024 22.5 -0.6 50 31-87 6-55 (77)
76 3bvo_A CO-chaperone protein HS 31.3 20 0.00068 26.7 1.6 26 15-43 9-37 (207)
77 1v5i_B POIA1, IA-1=serine prot 31.2 64 0.0022 19.8 3.8 50 62-114 5-70 (76)
78 1vio_A Ribosomal small subunit 31.1 1.2E+02 0.004 22.3 5.9 48 60-109 108-155 (243)
79 2i4a_A Thioredoxin; acidophIle 30.7 15 0.0005 22.1 0.7 69 30-105 26-105 (107)
80 1d4o_A NADP(H) transhydrogenas 30.1 37 0.0013 25.6 2.9 40 71-111 43-83 (184)
81 2kuc_A Putative disulphide-iso 29.8 13 0.00045 23.5 0.3 74 30-106 33-119 (130)
82 2e0q_A Thioredoxin; electron t 29.2 19 0.00065 21.2 1.0 69 30-105 22-100 (104)
83 1fb6_A Thioredoxin M; electron 29.2 16 0.00056 21.8 0.7 72 30-105 24-103 (105)
84 3a9j_C Mitogen-activated prote 28.4 25 0.00084 18.8 1.3 23 15-40 7-29 (34)
85 2av4_A Thioredoxin-like protei 28.4 2.7 9.1E-05 30.9 -3.6 70 30-105 47-136 (160)
86 2ph0_A Uncharacterized protein 28.0 24 0.00082 25.8 1.6 37 71-107 18-59 (174)
87 3j20_Y 30S ribosomal protein S 27.8 19 0.00067 21.3 0.8 27 14-41 17-45 (50)
88 2qgv_A Hydrogenase-1 operon pr 27.2 31 0.0011 24.2 2.0 70 30-105 40-122 (140)
89 1syr_A Thioredoxin; SGPP, stru 26.9 9.4 0.00032 23.8 -0.7 69 30-105 32-109 (112)
90 3qt1_I DNA-directed RNA polyme 26.9 41 0.0014 23.6 2.5 27 14-43 22-56 (133)
91 3kcm_A Thioredoxin family prot 26.9 12 0.00042 24.1 -0.2 41 71-112 96-147 (154)
92 1ksk_A Ribosomal small subunit 26.9 1.6E+02 0.0054 21.4 5.9 44 60-104 109-152 (234)
93 3k7a_M Transcription initiatio 25.7 39 0.0013 26.6 2.5 28 15-42 20-52 (345)
94 2vm1_A Thioredoxin, thioredoxi 25.5 20 0.00068 21.9 0.6 69 30-105 34-111 (118)
95 1xou_A ESPA; coiled coil, heli 25.5 15 0.00051 28.0 0.0 20 91-110 99-120 (192)
96 2k4x_A 30S ribosomal protein S 25.1 38 0.0013 20.3 1.8 29 14-42 16-45 (55)
97 2vim_A Thioredoxin, TRX; thior 24.3 21 0.00073 21.2 0.6 68 31-105 26-102 (104)
98 1r71_A Transcriptional repress 24.3 65 0.0022 23.4 3.3 27 70-109 66-92 (178)
99 3q6o_A Sulfhydryl oxidase 1; p 24.1 20 0.00067 25.7 0.5 69 30-105 36-124 (244)
100 2bru_C NAD(P) transhydrogenase 23.9 35 0.0012 25.8 1.8 40 71-111 51-91 (186)
101 1pft_A TFIIB, PFTFIIBN; N-term 23.8 38 0.0013 19.3 1.6 25 15-40 4-31 (50)
102 3g9k_S Capsule biosynthesis pr 23.8 62 0.0021 23.5 3.1 24 88-111 115-138 (177)
103 3nw0_A Non-structural maintena 23.7 26 0.00088 26.6 1.1 22 15-40 179-200 (238)
104 3p2a_A Thioredoxin 2, putative 23.1 31 0.0011 22.4 1.3 71 31-105 62-140 (148)
105 1xfl_A Thioredoxin H1; AT3G510 23.1 23 0.00078 22.7 0.6 69 30-105 44-121 (124)
106 1nj3_A NPL4; NZF domain, rubre 23.1 33 0.0011 17.8 1.2 22 16-40 6-27 (31)
107 1nsw_A Thioredoxin, TRX; therm 22.9 24 0.00081 21.2 0.6 71 30-104 23-101 (105)
108 2kum_A C-C motif chemokine 27; 22.8 38 0.0013 22.3 1.7 21 55-78 46-66 (88)
109 3qou_A Protein YBBN; thioredox 22.8 67 0.0023 23.2 3.2 68 30-104 32-110 (287)
110 3irb_A Uncharacterized protein 22.7 22 0.00077 24.9 0.5 23 16-41 47-69 (145)
111 3emx_A Thioredoxin; structural 22.1 16 0.00053 23.8 -0.4 37 69-106 80-123 (135)
112 2l57_A Uncharacterized protein 21.6 23 0.00079 22.3 0.4 78 30-111 32-120 (126)
113 3j21_g 50S ribosomal protein L 21.5 55 0.0019 19.6 2.1 25 15-42 13-37 (51)
114 2gjf_A Designed protein; proca 21.5 61 0.0021 19.7 2.3 28 84-111 45-73 (78)
115 1v98_A Thioredoxin; oxidoreduc 21.4 31 0.0011 22.2 1.0 68 31-105 57-135 (140)
116 1ogy_B Diheme cytochrome C NAP 21.3 51 0.0017 23.5 2.2 23 3-25 37-64 (130)
117 2yzu_A Thioredoxin; redox prot 21.2 28 0.00097 20.6 0.7 72 30-105 24-103 (109)
118 1t00_A Thioredoxin, TRX; redox 21.2 29 0.001 21.1 0.8 72 30-105 29-108 (112)
119 1ha6_A Macrophage inflammatory 21.0 46 0.0016 20.3 1.7 18 60-78 43-61 (70)
120 1nd9_A Translation initiation 20.8 66 0.0023 17.4 2.2 23 71-108 6-28 (49)
121 1ti3_A Thioredoxin H, PTTRXH1; 20.7 28 0.00094 21.1 0.6 69 30-105 32-109 (113)
122 3uvt_A Thioredoxin domain-cont 20.7 47 0.0016 19.8 1.7 73 30-105 27-109 (111)
123 1m8a_A Small inducible cytokin 20.6 48 0.0016 20.3 1.7 19 60-78 43-61 (70)
124 2kwv_A RAD30 homolog B, DNA po 20.5 48 0.0016 19.9 1.6 17 90-106 19-35 (48)
125 2i1u_A Thioredoxin, TRX, MPT46 20.2 25 0.00085 21.7 0.3 72 30-105 36-115 (121)
126 2r6f_A Excinuclease ABC subuni 20.1 31 0.0011 31.7 1.0 83 15-104 266-366 (972)
No 1
>3h7h_A Transcription elongation factor SPT4; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=100.00 E-value=1e-54 Score=314.46 Aligned_cols=109 Identities=39% Similarity=0.876 Sum_probs=106.2
Q ss_pred CCCCCCCCccccccccCcccccchhhccCCCCCCC-CCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCC
Q 046522 6 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVP 84 (115)
Q Consensus 6 ~~~p~~~~r~lrAC~~C~~I~t~~qf~~~gCpnC~-~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~p 84 (115)
.++|+++ |++|||+.|++|+|.+||+.+|||||+ +|+|+||+|++++|||++|+|+|+|+||++|||||||+|++++|
T Consensus 7 ~~iP~~~-r~lrAC~~C~~V~t~~qF~~~gCpnC~~~l~m~~~~d~v~~ctT~~f~G~I~i~dP~~SwVAk~~~i~~~vP 85 (120)
T 3h7h_A 7 ETVPKDL-RHLRACLLCSLVKTIDQFEYDGCDNCDAYLQMKGNREMVYDCTSSSFDGIIAMMSPEDSWVSKWQRVSNFKP 85 (120)
T ss_dssp GGSCSSS-TTEEEETTTCBEEEHHHHHHHCCTTTHHHHCCTTCHHHHHHHEESCEEEEEEESCGGGCHHHHHTTCTTSCS
T ss_pred ccCCCcc-ccCeeeccCCceechhhccCCCCCCCcchhhccCCcccccccccCCcceEEEEeCCcHHHHHHHhccCCCCC
Confidence 5679986 999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred eeeEEEecCCCcHHHHHHHHhcCCeecCCCC
Q 046522 85 GCYTLAVSEALPEDLQNLCEDERVQYVPPKR 115 (115)
Q Consensus 85 G~YAi~V~g~lp~~i~~~l~~~gi~y~prd~ 115 (115)
|+|||+|+|+||++|+++||++||+|+|||.
T Consensus 86 G~YAlkV~g~lp~~i~~~le~~gi~y~prd~ 116 (120)
T 3h7h_A 86 GVYAVSVTGRLPQGIVRELKSRGVAYKSRDT 116 (120)
T ss_dssp EEEEEEECCCCCHHHHHHHHHTTCCCCCCCC
T ss_pred CeEEEEecCcCCHHHHHHHHHcCCeeeCCCC
Confidence 9999999999999999999999999999985
No 2
>2exu_A Transcription initiation protein SPT4/SPT5; helixs surrounding beta sheet; 2.23A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-42 Score=267.60 Aligned_cols=96 Identities=34% Similarity=0.857 Sum_probs=92.0
Q ss_pred ccccccccCcccccchhhccCCCCCCC-CCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeEEEec
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVS 92 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~-~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~ 92 (115)
|++|||+.|++|+|.+||..+|||||+ ++ +||+++++||||++|+|+|+||||++|||||||+|++++||+||++|.
T Consensus 2 ~~lrAC~~C~~i~t~~qf~~~gCpnC~~~l--~g~~~~v~~cts~~f~G~i~i~dp~~Swvakw~rl~~y~pG~YAisV~ 79 (200)
T 2exu_A 2 SSERACMLCGIVQTTNEFNRDGCPNCQGIF--EEAGVSTMECTSPSFEGLVGMCKPTKSWVAKWLSVDHSIAGMYAIKVD 79 (200)
T ss_dssp -CEEEETTTCBEEEHHHHHHHCCTTTHHHH--HHHTCCSGGGEESCEEEEEEESCTTTCHHHHHTTCTTSCSEEEEEEEC
T ss_pred CcceecccCCceechhHhccCCCCCCcccc--CCCcceeeecccCCeeeEEEEeCCcchHHHHHHhccccccceeeeccc
Confidence 689999999999999999999999996 66 789999999999999999999999999999999999999999999999
Q ss_pred CCCcHHHHHHHHhcCCeecCCCC
Q 046522 93 EALPEDLQNLCEDERVQYVPPKR 115 (115)
Q Consensus 93 g~lp~~i~~~l~~~gi~y~prd~ 115 (115)
|+||++++++|++ |+|||+
T Consensus 80 G~LPq~i~~lLp~----y~~r~~ 98 (200)
T 2exu_A 80 GRLPAEVVELLPH----YKPRDG 98 (200)
T ss_dssp SCCCHHHHTTCTT----CCCTTS
T ss_pred CcCcHHHHhhCCC----ccCCCc
Confidence 9999999999997 999985
No 3
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=99.97 E-value=4.8e-32 Score=174.90 Aligned_cols=59 Identities=34% Similarity=0.662 Sum_probs=54.4
Q ss_pred ccccccCcccccchhhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeEEEecC
Q 046522 16 LRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSE 93 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g 93 (115)
||||+.|++|++.+ |||||++ |||++|+|+|+|+||++|||||||+|+ +||+|||+|+.
T Consensus 1 lrAC~~C~~v~~~~-----~CpnC~~------------~tt~~~~G~v~i~dP~~SwvAk~~~i~--~pG~YAl~V~~ 59 (59)
T 3lpe_B 1 MRACLKCKYLTNDE-----ICPICHS------------PTSENWIGLLIVINPEKSEIAKKAGID--IKGKYALSVKE 59 (59)
T ss_dssp CEEETTTCBEESSS-----BCTTTCC------------BEESCEECEEEESCTTTCHHHHHTTCC--SCEEECSEECC
T ss_pred CcccccCCcccCCC-----CCCCCCC------------CccCCEeeEEEEeCCchhHHHHHhCCC--CCcEEEEEeeC
Confidence 69999999999865 6999983 589999999999999999999999999 79999999963
No 4
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=99.96 E-value=9.1e-31 Score=178.17 Aligned_cols=69 Identities=22% Similarity=0.408 Sum_probs=55.2
Q ss_pred CCCCCCCCccccccccCcccccchhhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCe
Q 046522 6 AQIPTSFGHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPG 85 (115)
Q Consensus 6 ~~~p~~~~r~lrAC~~C~~I~t~~qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG 85 (115)
-.+|+.....+|||++|++|++.+ +||||++. +||++|+|+|+|+||++|||||||+|+ +||
T Consensus 13 ~~~~~~~~m~~rAC~~C~~v~~~d-----~CPnCgs~-----------~~T~~w~G~ViI~dPe~S~IAk~l~i~--~PG 74 (81)
T 3p8b_A 13 GLVPRGSHMSEKACRHCHYITSED-----RCPVCGSR-----------DLSEEWFDLVIIVDVENSEIAKKIGAK--VPG 74 (81)
T ss_dssp ---------CCEEETTTCBEESSS-----SCTTTCCC-----------CEESCEEEEEEESCTTTCHHHHHHTCC--SSE
T ss_pred ccccCCcchhHHHHhhCCCccCCC-----CCCCCCCC-----------ccCCccceEEEEeCChHhHHHHHhCCC--CCc
Confidence 357888778899999999999865 59999853 489999999999999999999999998 799
Q ss_pred eeEEEec
Q 046522 86 CYTLAVS 92 (115)
Q Consensus 86 ~YAi~V~ 92 (115)
+|||+|+
T Consensus 75 ~YAlkVr 81 (81)
T 3p8b_A 75 KYAIRVR 81 (81)
T ss_dssp EEEEEEC
T ss_pred eEEEEeC
Confidence 9999995
No 5
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=99.96 E-value=2.9e-30 Score=171.19 Aligned_cols=62 Identities=24% Similarity=0.468 Sum_probs=53.5
Q ss_pred CccccccccCcccccchhhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeEEEec
Q 046522 13 GHELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTLAVS 92 (115)
Q Consensus 13 ~r~lrAC~~C~~I~t~~qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~ 92 (115)
+...+||++|++|+ ..+|||||++. +||++|+|+|+|+||++|||||||+++ +||+|||+|+
T Consensus 8 ~~~~~AC~~C~~~~-----~~~~CPnC~s~-----------~tS~~w~G~ViI~dPe~S~IAK~l~i~--~pG~YAlkV~ 69 (69)
T 1ryq_A 8 GSSEKACRHCHYIT-----SEDRCPVCGSR-----------DLSEEWFDLVIIVDVENSEIAKKIGAK--VPGKYAIRVR 69 (69)
T ss_dssp ---CEEETTTCBEE-----SSSSCTTTCCC-----------CEESCEEEEEEESCGGGCHHHHHHTCC--SCEEEEEEEC
T ss_pred CchhhhHHhCCccc-----cCCcCCCccCC-----------ccCCccceEEEEeCCchhHHHHHhCCC--CCceEEEEeC
Confidence 35689999999998 24689999843 599999999999999999999999988 7999999995
No 6
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=85.09 E-value=0.41 Score=29.22 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=19.4
Q ss_pred ccccccCcccccchhhcc---CCCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRE---SGCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~---~gCpnC~~ 41 (115)
...|++|+...+.++-.. -.||+|+|
T Consensus 3 iY~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 3 VYRCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp --CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EEEeeccCCCccHHHHhhCCCcccCccCc
Confidence 357999999998887533 36999995
No 7
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=76.22 E-value=1 Score=26.85 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=17.0
Q ss_pred cccccCcccccch-----hhcc--C--CCCCCCC
Q 046522 17 RACLRCRLVKTYD-----QFRE--S--GCENCPF 41 (115)
Q Consensus 17 rAC~~C~~I~t~~-----qf~~--~--gCpnC~~ 41 (115)
--|..|++|-..+ .|.+ + .||.|+.
T Consensus 5 y~C~vCGyvyd~~~Gd~t~f~~lP~dw~CP~Cg~ 38 (46)
T 6rxn_A 5 YVCNVCGYEYDPAEHDNVPFDQLPDDWCCPVCGV 38 (46)
T ss_dssp EEETTTCCEECGGGGTTCCGGGSCTTCBCTTTCC
T ss_pred EECCCCCeEEeCCcCCCcchhhCCCCCcCcCCCC
Confidence 4699999998642 1222 1 5999983
No 8
>2apo_B Ribosome biogenesis protein NOP10; protein-protein complex, box H/ACA, snoRNP, pseudouridine synthase, RNA modification; 1.95A {Methanocaldococcus jannaschii} SCOP: g.41.16.1 PDB: 2aqc_A
Probab=75.18 E-value=1.3 Score=28.01 Aligned_cols=21 Identities=24% Similarity=0.713 Sum_probs=16.9
Q ss_pred cccccccCcccccchhhccCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
.++.|..|+.-.-. +.||+||
T Consensus 5 ~mr~C~~CgvYTLk-----~~CP~CG 25 (60)
T 2apo_B 5 RMKKCPKCGLYTLK-----EICPKCG 25 (60)
T ss_dssp CCEECTTTCCEESS-----SBCSSSC
T ss_pred hceeCCCCCCEecc-----ccCcCCC
Confidence 58999999877653 3499999
No 9
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=74.69 E-value=1.7 Score=30.83 Aligned_cols=15 Identities=13% Similarity=0.368 Sum_probs=12.1
Q ss_pred ccccccCcccccchh
Q 046522 16 LRACLRCRLVKTYDQ 30 (115)
Q Consensus 16 lrAC~~C~~I~t~~q 30 (115)
.--|+.|+..-+.++
T Consensus 70 ~~~C~~CG~~~~~~~ 84 (139)
T 3a43_A 70 VFKCRNCNYEWKLKE 84 (139)
T ss_dssp EEEETTTCCEEEGGG
T ss_pred cEECCCCCCEEeccc
Confidence 456999999987766
No 10
>1e8j_A Rubredoxin; iron-sulfur-protein, zinc-substitution, thermostability; NMR {Desulfovibrio gigas} SCOP: g.41.5.1 PDB: 1rdg_A 2dsx_A 1spw_A
Probab=74.54 E-value=1.3 Score=26.89 Aligned_cols=13 Identities=15% Similarity=0.248 Sum_probs=10.2
Q ss_pred cccccCcccccch
Q 046522 17 RACLRCRLVKTYD 29 (115)
Q Consensus 17 rAC~~C~~I~t~~ 29 (115)
--|..|++|-..+
T Consensus 4 y~C~~CGyvYd~~ 16 (52)
T 1e8j_A 4 YVCTVCGYEYDPA 16 (52)
T ss_dssp EECSSSCCCCCTT
T ss_pred EEeCCCCeEEcCC
Confidence 4599999998743
No 11
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=73.09 E-value=0.8 Score=34.98 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=19.6
Q ss_pred ccccccCcccccchhhcc-------CCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRE-------SGCENCP 40 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~-------~gCpnC~ 40 (115)
-++|..|++.++...|.. -.||+|+
T Consensus 198 ~~~C~GC~~~lppq~~~~i~~~~~Iv~Cp~Cg 229 (256)
T 3na7_A 198 KQACGGCFIRLNDKIYTEVLTSGDMITCPYCG 229 (256)
T ss_dssp TTBCTTTCCBCCHHHHHHHHHSSSCEECTTTC
T ss_pred CCccCCCCeeeCHHHHHHHHCCCCEEECCCCC
Confidence 369999999998875522 1599999
No 12
>1faa_A Thioredoxin F; electron transport; 1.85A {Spinacia oleracea} SCOP: c.47.1.1
Probab=69.72 E-value=0.73 Score=29.50 Aligned_cols=69 Identities=17% Similarity=0.179 Sum_probs=39.5
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEE-EeC--CChhHHHHHHhcCCCCC-------eeeEEEecCCCcHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIIS-VMD--PTRSWAARWLRIGRFVP-------GCYTLAVSEALPEDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~-i~d--P~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp~~i 99 (115)
.|....||.|... ....+-....+.|+.. -+| .+...+++.+++.. +| |...-+..|..++++
T Consensus 43 ~f~a~wC~~C~~~------~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l 115 (124)
T 1faa_A 43 DMFTQWCGPCKAM------APKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV-VPTFKILKENSVVGEVTGAKYDKL 115 (124)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSS-SSEEEEEETTEEEEEEESSCHHHH
T ss_pred EEECCcCHhHHHH------hHHHHHHHHHCCCCEEEEEecCcchHHHHHHcCCCe-eeEEEEEeCCcEEEEEcCCCHHHH
Confidence 4667789999721 0111112223333222 233 35688999999876 45 443344567668888
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 116 ~~~i~~ 121 (124)
T 1faa_A 116 LEAIQA 121 (124)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888775
No 13
>3pwf_A Rubrerythrin; non heme iron peroxidases, oxidative stress, oxidoreductase; 1.64A {Pyrococcus furiosus} PDB: 3mps_A 3pza_A 3qvd_A 1nnq_A 2hr5_A
Probab=68.24 E-value=1.7 Score=31.78 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=17.8
Q ss_pred ccccccCcccccchhhccCCCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
.--|..|++|...+- -+.||.|+.
T Consensus 138 ~~~C~~CG~i~~~~~--p~~CP~Cg~ 161 (170)
T 3pwf_A 138 VYICPICGYTAVDEA--PEYCPVCGA 161 (170)
T ss_dssp EEECTTTCCEEESCC--CSBCTTTCC
T ss_pred eeEeCCCCCeeCCCC--CCCCCCCCC
Confidence 455999999987432 257999983
No 14
>1lko_A Rubrerythrin all-iron(II) form; reduced form, DIIRON, four-helix bundle, rubre like, electron transport; 1.63A {Desulfovibrio vulgaris} SCOP: a.25.1.1 g.41.5.1 PDB: 1dvb_A 1jyb_A 1b71_A 1lkm_A 1lkp_A 1qyb_A 1s2z_A 1s30_A 1ryt_A
Probab=67.65 E-value=1.5 Score=32.27 Aligned_cols=25 Identities=20% Similarity=0.397 Sum_probs=18.2
Q ss_pred ccccccCcccccchhhccCCCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
.--|..|++|.+-+..- +.||.|+.
T Consensus 155 ~~~C~~CG~~~~g~~~p-~~CP~C~~ 179 (191)
T 1lko_A 155 KWRCRNCGYVHEGTGAP-ELCPACAH 179 (191)
T ss_dssp EEEETTTCCEEEEEECC-SBCTTTCC
T ss_pred eEEECCCCCEeeCCCCC-CCCCCCcC
Confidence 45699999997644322 47999983
No 15
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=67.62 E-value=2.9 Score=26.79 Aligned_cols=28 Identities=14% Similarity=0.382 Sum_probs=19.0
Q ss_pred ccccccccCcccccchhhccCCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
+-..-|..|+...+...=..--||+|+.
T Consensus 26 ~v~Y~C~~CG~~~e~~~~d~irCp~CG~ 53 (70)
T 1twf_L 26 TLKYICAECSSKLSLSRTDAVRCKDCGH 53 (70)
T ss_dssp CCCEECSSSCCEECCCTTSTTCCSSSCC
T ss_pred eEEEECCCCCCcceeCCCCCccCCCCCc
Confidence 3456799999985554211236999994
No 16
>3vdp_A Recombination protein RECR; zinc finger, DNA repair, DNA binding; 2.45A {Thermoanaerobacter tengcongensis} PDB: 3vdu_A 3ve5_D
Probab=67.45 E-value=1.7 Score=33.50 Aligned_cols=54 Identities=22% Similarity=0.382 Sum_probs=35.2
Q ss_pred cccccccCcccccchhhccCCCCCCCCCCCCCCcccccccCCCccceEEEEe-CCChhHHHHHHhcCCCCCeeeEEE
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVM-DPTRSWAARWLRIGRFVPGCYTLA 90 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~-dP~~SwVAk~l~i~~~~pG~YAi~ 90 (115)
+.+-|..|+-+.+.+. |+.|.. ...-.++|+|+ +|.+=|.-...+ .-.|.|-|-
T Consensus 67 ~i~~C~~C~nlte~~~-----C~IC~d--------------~~Rd~~~iCVVE~~~Dv~aiE~t~---~y~G~YhVL 121 (212)
T 3vdp_A 67 KLRYCKICFNITDKEV-----CDICSD--------------ENRDHSTICVVSHPMDVVAMEKVK---EYKGVYHVL 121 (212)
T ss_dssp HCEECTTTCCEESSSS-----CHHHHC--------------TTSEEEEEEEESSHHHHHHHHTTS---CCCEEEEEC
T ss_pred hCCcCCCCCCCCCCCc-----CCCCCC--------------CCCCCCEEEEECCHHHHHHHHhhC---ccceEEEec
Confidence 5688999999977554 999962 22236777777 554444433333 248999874
No 17
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=66.32 E-value=2.9 Score=25.55 Aligned_cols=25 Identities=16% Similarity=0.615 Sum_probs=17.7
Q ss_pred cccccCcccccchh------------hcc--C--CCCCCCC
Q 046522 17 RACLRCRLVKTYDQ------------FRE--S--GCENCPF 41 (115)
Q Consensus 17 rAC~~C~~I~t~~q------------f~~--~--gCpnC~~ 41 (115)
--|..|++|-..+. |.. + .||.|+.
T Consensus 4 y~C~~CGyvYd~~~Gdp~~gi~pGt~f~~lP~dw~CP~Cga 44 (55)
T 2v3b_B 4 WQCVVCGFIYDEALGLPEEGIPAGTRWEDIPADWVCPDCGV 44 (55)
T ss_dssp EEETTTCCEEETTTCBTTTTBCTTCCGGGSCTTCCCTTTCC
T ss_pred EEeCCCCeEECCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 46999999987643 322 2 6999984
No 18
>2aus_D NOP10, ribosome biogenesis protein NOP10; isomerase, structural protein, isomerase-structural protein; 2.10A {Pyrococcus abyssi} PDB: 3lwr_B 3lwo_B* 3lwq_B* 3lwp_B 3lwv_B 3hax_C* 2hvy_C* 3hay_C* 2ey4_E 3hjw_B* 2rfk_B* 3hjy_B 3mqk_B
Probab=66.12 E-value=2.3 Score=26.79 Aligned_cols=22 Identities=23% Similarity=0.621 Sum_probs=16.4
Q ss_pred ccccccccCcccccchhhccCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
..+|-|..|+.-.-. +.||+|+
T Consensus 3 s~mr~C~~Cg~YTLk-----~~CP~CG 24 (60)
T 2aus_D 3 FRIRKCPKCGRYTLK-----ETCPVCG 24 (60)
T ss_dssp -CCEECTTTCCEESS-----SBCTTTC
T ss_pred ccceECCCCCCEEcc-----ccCcCCC
Confidence 358999999876543 3499998
No 19
>2kn9_A Rubredoxin; metalloprotein, ssgcid, structural genomics, seattle structural genomics center for infectious electron transport, iron; NMR {Mycobacterium tuberculosis}
Probab=65.36 E-value=2.3 Score=28.25 Aligned_cols=27 Identities=19% Similarity=0.603 Sum_probs=19.2
Q ss_pred cccccccCcccccchh------------hcc--C--CCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQ------------FRE--S--GCENCPF 41 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~q------------f~~--~--gCpnC~~ 41 (115)
..--|..|++|-..+. |.+ + .||.|+.
T Consensus 26 ~~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 68 (81)
T 2kn9_A 26 KLFRCIQCGFEYDEALGWPEDGIAAGTRWDDIPDDWSCPDCGA 68 (81)
T ss_dssp CEEEETTTCCEEETTTCBTTTTBCTTCCTTTSCTTCCCTTTCC
T ss_pred ceEEeCCCCEEEcCCcCCcccCcCCCCChhHCCCCCcCCCCCC
Confidence 4578999999987632 322 2 5999984
No 20
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox enzymology, oxidoreductase, redox-active center, transport; 1.85A {Staphylococcus aureus} SCOP: c.47.1.1 PDB: 2o7k_A 2o85_A 2o89_A 2o87_A
Probab=64.24 E-value=1.6 Score=26.59 Aligned_cols=69 Identities=17% Similarity=0.330 Sum_probs=37.9
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCee-------eEEEecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPGC-------YTLAVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG~-------YAi~V~g~lp-~~ 98 (115)
.|....||.|... ....+-....|.+ ++.|---+...+++.+++.. +|=. ..-+..|..+ ++
T Consensus 25 ~f~~~~C~~C~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~~ 97 (106)
T 3die_A 25 DFWATACGPCKMI------APVLEELAADYEGKADILKLDVDENPSTAAKYEVMS-IPTLIVFKDGQPVDKVVGFQPKEN 97 (106)
T ss_dssp EEECSBCHHHHHH------HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS-BSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCCHHHHHH------hHHHHHHHHHhcCCcEEEEEECCcCHHHHHhCCCcc-cCEEEEEeCCeEEEEEeCCCCHHH
Confidence 3666789999821 1111223334443 33333344567899999876 4533 3334556665 56
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 98 l~~~l~~ 104 (106)
T 3die_A 98 LAEVLDK 104 (106)
T ss_dssp HHHHHHT
T ss_pred HHHHHHH
Confidence 6666653
No 21
>2pu9_C TRX-F, thioredoxin F-type, chloroplast; protein-protein complex, iron-sulfur, electron transport; 1.65A {Spinacia oleracea} PDB: 2pvo_C 1f9m_A
Probab=62.32 E-value=1.2 Score=27.85 Aligned_cols=69 Identities=16% Similarity=0.117 Sum_probs=38.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEE-EeC--CChhHHHHHHhcCCCCCe-------eeEEEecCCCcHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIIS-VMD--PTRSWAARWLRIGRFVPG-------CYTLAVSEALPEDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~-i~d--P~~SwVAk~l~i~~~~pG-------~YAi~V~g~lp~~i 99 (115)
.|....||.|... ....+-....+.++.. -+| .+...+++.+++.. +|- ...-+..|.-++++
T Consensus 30 ~f~a~wC~~C~~~------~~~l~~~~~~~~~v~~~~vd~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l 102 (111)
T 2pu9_C 30 DMFTQWCGPSKAM------APKYEKLAEEYLDVIFLKLDCNQENKTLAKELGIRV-VPTFKILKENSVVGEVTGAKYDKL 102 (111)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEECSSTTHHHHHHHCCSB-SSEEEEESSSSEEEEEESSCHHHH
T ss_pred EEECCcCHhHHHH------CHHHHHHHHHCCCeEEEEEecCcchHHHHHHcCCCe-eeEEEEEeCCcEEEEEcCCCHHHH
Confidence 4666789999721 0011112223333222 234 35688999999875 553 33334566667888
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 103 ~~~l~~ 108 (111)
T 2pu9_C 103 LEAIQA 108 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877764
No 22
>1yk4_A Rubredoxin, RD; electron transport; 0.69A {Pyrococcus abyssi} PDB: 2pya_A 1yk5_A 1bq8_A 1bq9_A* 3kyu_A 3kyv_A 3kyw_A 3kyx_A 3kyy_A 3ryg_A 3rz6_A 3rzt_A 3ss2_A 1brf_A 1caa_A 1cad_A 1vcx_A 1zrp_A 1iu5_A 1iu6_A ...
Probab=62.18 E-value=3.1 Score=25.13 Aligned_cols=13 Identities=23% Similarity=0.498 Sum_probs=10.2
Q ss_pred cccccCcccccch
Q 046522 17 RACLRCRLVKTYD 29 (115)
Q Consensus 17 rAC~~C~~I~t~~ 29 (115)
--|..|++|-..+
T Consensus 3 ~~C~~CGyvYd~~ 15 (52)
T 1yk4_A 3 LSCKICGYIYDED 15 (52)
T ss_dssp EEESSSSCEEETT
T ss_pred EEeCCCCeEECCC
Confidence 3599999998764
No 23
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=62.00 E-value=3.2 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=20.0
Q ss_pred cccccccCcccccchhhccC-CCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRES-GCENCPF 41 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~-gCpnC~~ 41 (115)
..--|..|+...+.+.+. . .||.|+.
T Consensus 72 ~~~~C~~CG~~~e~~~~~-~~~CP~Cgs 98 (119)
T 2kdx_A 72 VELECKDCSHVFKPNALD-YGVCEKCHS 98 (119)
T ss_dssp CEEECSSSSCEECSCCST-TCCCSSSSS
T ss_pred ceEEcCCCCCEEeCCCCC-CCcCccccC
Confidence 356799999998876653 4 6999983
No 24
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.99A {Desulfitobacterium hafniense dcb-2} SCOP: c.47.1.0
Probab=61.91 E-value=2.1 Score=26.33 Aligned_cols=69 Identities=16% Similarity=0.298 Sum_probs=38.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCC-------eeeEEEecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVP-------GCYTLAVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp-~~ 98 (115)
.|....||.|..+ ....+-....|.| ++.|--.+...+++.+++.. +| |....+..|..+ ++
T Consensus 28 ~f~a~~C~~C~~~------~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~~ 100 (111)
T 3gnj_A 28 MFSRKNCHVCQKV------TPVLEELRLNYEESFGFYYVDVEEEKTLFQRFSLKG-VPQILYFKDGEYKGKMAGDVEDDE 100 (111)
T ss_dssp EEECSSCHHHHHH------HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS-SCEEEEEETTEEEEEEESSCCHHH
T ss_pred EEeCCCChhHHHH------HHHHHHHHHHcCCceEEEEEECCcChhHHHhcCCCc-CCEEEEEECCEEEEEEeccCCHHH
Confidence 3666789999821 1122223344443 33332334567899999876 45 444445667665 56
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 101 l~~~l~~ 107 (111)
T 3gnj_A 101 VEQMIAD 107 (111)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 25
>3h0g_L DNA-directed RNA polymerases I, II, and III subunit rpabc4; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=61.26 E-value=5.1 Score=25.35 Aligned_cols=26 Identities=19% Similarity=0.431 Sum_probs=20.3
Q ss_pred cccccccCcccccchhhccCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
-..-|..|+...+.+.-..-.||+|+
T Consensus 20 v~Y~C~~Cg~~~~l~~~~~iRC~~CG 45 (63)
T 3h0g_L 20 MIYLCADCGARNTIQAKEVIRCRECG 45 (63)
T ss_dssp CCCBCSSSCCBCCCCSSSCCCCSSSC
T ss_pred eEEECCCCCCeeecCCCCceECCCCC
Confidence 45789999998887753335799999
No 26
>2hl7_A Cytochrome C-type biogenesis protein CCMH; three-helices bundle, oxidoreductase; HET: PG4; 1.70A {Pseudomonas aeruginosa}
Probab=61.02 E-value=2 Score=28.52 Aligned_cols=39 Identities=21% Similarity=0.181 Sum_probs=30.9
Q ss_pred hhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhc---CCeecCC
Q 046522 70 RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE---RVQYVPP 113 (115)
Q Consensus 70 ~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~---gi~y~pr 113 (115)
+|-+|+-||.. +|..-..|.=.++|++.|-++ =|-|.|+
T Consensus 41 na~iA~dlR~~-----V~~~l~~G~sd~eI~~~~v~RYG~fVly~Pp 82 (84)
T 2hl7_A 41 NAPIAADLRKQ-----IYGQLQQGKSDGEIVDYMVARYGDFVRYKPP 82 (84)
T ss_dssp CSHHHHHHHHH-----HHHHHHHTCCHHHHHHHHHHHHTTTCEECCC
T ss_pred CcHHHHHHHHH-----HHHHHHcCCCHHHHHHHHHHhcCCeeeeeCC
Confidence 57899999855 344456899999999999988 4778776
No 27
>1dx8_A Rubredoxin; electron transport, zinc-substitution; NMR {Guillardia theta} SCOP: g.41.5.1 PDB: 1h7v_A
Probab=58.46 E-value=4.3 Score=25.97 Aligned_cols=26 Identities=19% Similarity=0.512 Sum_probs=18.2
Q ss_pred ccccccCcccccchh------------hcc--C--CCCCCCC
Q 046522 16 LRACLRCRLVKTYDQ------------FRE--S--GCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~q------------f~~--~--gCpnC~~ 41 (115)
.--|..|++|-..+. |.. + .||.|+.
T Consensus 7 ~y~C~vCGyiYd~~~Gdp~~gi~pGT~f~~lPddw~CP~Cga 48 (70)
T 1dx8_A 7 KYECEACGYIYEPEKGDKFAGIPPGTPFVDLSDSFMCPACRS 48 (70)
T ss_dssp CEEETTTCCEECTTTCCTTTTCCSSCCGGGSCTTCBCTTTCC
T ss_pred eEEeCCCCEEEcCCCCCcccCcCCCCchhhCCCCCcCCCCCC
Confidence 467999999987542 222 2 5999984
No 28
>1s24_A Rubredoxin 2; electron transport; NMR {Pseudomonas oleovorans} SCOP: g.41.5.1
Probab=57.95 E-value=3.6 Score=27.61 Aligned_cols=26 Identities=19% Similarity=0.604 Sum_probs=18.6
Q ss_pred ccccccCcccccch------------hhcc--C--CCCCCCC
Q 046522 16 LRACLRCRLVKTYD------------QFRE--S--GCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~------------qf~~--~--gCpnC~~ 41 (115)
.--|..|++|-..+ .|.+ + .||.|+.
T Consensus 35 ~y~C~vCGyvYD~~~Gdp~~gI~pGT~fedlPddW~CPvCga 76 (87)
T 1s24_A 35 KWICITCGHIYDEALGDEAEGFTPGTRFEDIPDDWCCPDCGA 76 (87)
T ss_dssp EEEETTTTEEEETTSCCTTTTCCSCCCGGGCCTTCCCSSSCC
T ss_pred eEECCCCCeEecCCcCCcccCcCCCCChhHCCCCCCCCCCCC
Confidence 46799999998763 2322 2 5999984
No 29
>2gml_A Ribosomal large subunit pseudouridine synthase F; RLUF, ribosome, RNA modifying enzyme, isomerase; 2.60A {Escherichia coli}
Probab=56.96 E-value=19 Score=27.57 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=34.5
Q ss_pred ceEEEEeCCChhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhcCCee
Q 046522 60 NGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~gi~y 110 (115)
+|+|.+.+-. .+..+.+.-...+.=.|-+.|.|.++++.++.|+ .|+..
T Consensus 58 SGLLLlT~dg-~~a~~L~~p~~~v~K~Y~a~V~G~~~~~~i~~l~-~Gv~l 106 (237)
T 2gml_A 58 QGLIFLTNHG-DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMS-AGVPI 106 (237)
T ss_dssp EEEEEEESCH-HHHHHHHHHHHHSCEEEEEEESSCCCHHHHHHHS-SCCEE
T ss_pred eeEEEEEcCH-HHHHHHhCccCCCCEEEEEEEcccCCHHHHHHHH-cCeEe
Confidence 7999997652 3444444333357889999999999999877764 46653
No 30
>1vdd_A Recombination protein RECR; helix-hairpin-helix, zinc finger, toprim, walker B ATP binding motif; 2.50A {Deinococcus radiodurans} SCOP: e.49.1.1 PDB: 2v1c_A
Probab=56.65 E-value=1.9 Score=33.64 Aligned_cols=54 Identities=20% Similarity=0.371 Sum_probs=31.9
Q ss_pred cccccccCcccccchhhccCCCCCCCCCCCCCCcccccccCCCccceEEEEe-CCChhHHHHHHhcCCCCCeeeEEE
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVM-DPTRSWAARWLRIGRFVPGCYTLA 90 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~-dP~~SwVAk~l~i~~~~pG~YAi~ 90 (115)
+.+-|..|+-+.+.+ -|+.|... ++| .+.|+|+ +|.+=|.-... ..-.|.|-|-
T Consensus 53 ~i~~C~~C~nlte~~-----~C~IC~d~----~Rd----------~~~iCVVE~~~Dv~aiE~t---~~y~G~YhVL 107 (228)
T 1vdd_A 53 DLHVCPICFNITDAE-----KCDVCADP----SRD----------QRTICVVEEPGDVIALERS---GEYRGLYHVL 107 (228)
T ss_dssp HCEECSSSCCEESSS-----SCHHHHCS----SSC----------TTEEEEESSHHHHHHTTTT---SSCCSEEEEC
T ss_pred cCeEcCCCCCCcCCC-----cCCCCCCC----CcC----------CCeEEEECCHHHHHHHHHh---cccceEEEec
Confidence 578899999996533 49999721 222 4566666 44333322222 2357888763
No 31
>2j23_A Thioredoxin; immune protein, autoreactivity, cross-reactivity, IGE, fungi, epitope, allergen; 1.41A {Malassezia sympodialis}
Probab=56.31 E-value=6.4 Score=25.15 Aligned_cols=69 Identities=22% Similarity=0.262 Sum_probs=38.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--E-EEEeCCC-hhHHHHHHhcCCCCCeeeE-------EEecCCCcHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--I-ISVMDPT-RSWAARWLRIGRFVPGCYT-------LAVSEALPED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~-I~i~dP~-~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~ 98 (115)
.|....||.|... ....+-....|.+ + ++.++-+ ...+++.+++.. +|-.+- -++.|.-+++
T Consensus 39 ~f~a~~C~~C~~~------~~~l~~l~~~~~~~~v~~~~vd~d~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~ 111 (121)
T 2j23_A 39 DFWATWCGPCKMI------GPVFEKISDTPAGDKVGFYKVDVDEQSQIAQEVGIRA-MPTFVFFKNGQKIDTVVGADPSK 111 (121)
T ss_dssp EEECTTCSTHHHH------HHHHHHHHTSTHHHHSEEEEEETTTCHHHHHHHTCCS-SSEEEEEETTEEEEEEESSCHHH
T ss_pred EEECCCCHhHHHH------HHHHHHHHHHCcCCcEEEEEEECcCCHHHHHHcCCCc-ccEEEEEECCeEEeeEcCCCHHH
Confidence 3566789999821 1111223344544 2 2334443 467899999875 665443 3345555677
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 112 l~~~l~~ 118 (121)
T 2j23_A 112 LQAAITQ 118 (121)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 32
>2kw0_A CCMH protein; oxidoreductase, cytochrome C maturation; NMR {Escherichia coli}
Probab=55.44 E-value=2.4 Score=28.62 Aligned_cols=39 Identities=26% Similarity=0.294 Sum_probs=30.7
Q ss_pred hhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhc---CCeecCC
Q 046522 70 RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDE---RVQYVPP 113 (115)
Q Consensus 70 ~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~---gi~y~pr 113 (115)
+|-+|+-||.. +|..-..|.=.++|++.|-++ =|-|.|+
T Consensus 38 nA~iA~dlR~~-----Vre~l~~G~Sd~eI~~~mv~RYGdfVly~Pp 79 (90)
T 2kw0_A 38 NSMIATDLRQK-----VYELMQEGKSKKEIVDYMVARYGNFVTYDPP 79 (90)
T ss_dssp CCHHHHHHHHH-----HHHHHHHTCCHHHHHHHHHHHHTTTCBCSCC
T ss_pred CcHHHHHHHHH-----HHHHHHcCCCHHHHHHHHHHhcCCeEEeeCC
Confidence 57899999855 344456899999999999988 4777775
No 33
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=55.20 E-value=5.6 Score=24.23 Aligned_cols=41 Identities=22% Similarity=0.452 Sum_probs=22.4
Q ss_pred ccccccccCc---ccccchhhccCCCCCCC-CCCCCCCcccccccCCCccce
Q 046522 14 HELRACLRCR---LVKTYDQFRESGCENCP-FFKMDEDHERVVDCTTPNFNG 61 (115)
Q Consensus 14 r~lrAC~~C~---~I~t~~qf~~~gCpnC~-~l~m~~~~d~v~~~tT~~f~G 61 (115)
.....|..|+ +|...+. -+--|.+|+ .++ +++.| ..+.|..
T Consensus 9 l~~~~Cp~C~~~~lv~D~~~-ge~vC~~CGlVl~-----e~~iD-~gpEWR~ 53 (58)
T 1dl6_A 9 LPRVTCPNHPDAILVEDYRA-GDMICPECGLVVG-----DRVID-VGSEWRT 53 (58)
T ss_dssp CSCCSBTTBSSSCCEECSSS-CCEECTTTCCEEC-----CSCCC-CCCSCCC
T ss_pred cccccCcCCCCCceeEeCCC-CeEEeCCCCCEEe-----ccccc-cCCcccc
Confidence 4556799995 3332221 012499999 432 33444 4666754
No 34
>1wjk_A C330018D20RIK protein; glutaredoxin, thioredoxin fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: c.47.1.1
Probab=52.70 E-value=7.9 Score=24.67 Aligned_cols=65 Identities=14% Similarity=0.152 Sum_probs=33.0
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce-EEEEeCCChhHHHHHHhcCCCCCeeeEEEecCCC-------cHHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG-IISVMDPTRSWAARWLRIGRFVPGCYTLAVSEAL-------PEDLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G-~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g~l-------p~~i~~ 101 (115)
.|...+||.|... ..+.+-...+..= .|-|-+|+.-.+++..+ ..+|-. -+.|+. ++++.+
T Consensus 21 ~f~~~~C~~C~~~------~~~L~~l~~~i~~~~vdi~~~~~~el~~~~g--~~vP~l---~~~g~~~~~~g~~~~~l~~ 89 (100)
T 1wjk_A 21 LFTKAPCPLCDEA------KEVLQPYKDRFILQEVDITLPENSTWYERYK--FDIPVF---HLNGQFLMMHRVNTSKLEK 89 (100)
T ss_dssp EEECSSCHHHHHH------HHHTSTTSSSSEEEEEETTSSTTHHHHHHSS--SSCSEE---EESSSEEEESSCCHHHHHH
T ss_pred EEeCCCCcchHHH------HHHHHHhhhCCeEEEEECCCcchHHHHHHHC--CCCCEE---EECCEEEEecCCCHHHHHH
Confidence 4667899999821 1112212222211 11111345677777777 447843 344443 566666
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|+.
T Consensus 90 ~l~~ 93 (100)
T 1wjk_A 90 QLRK 93 (100)
T ss_dssp HHHS
T ss_pred HHHH
Confidence 6653
No 35
>1dby_A Chloroplast thioredoxin M CH2; thioredoxin CH2, chloroplastic thioredoxin, oxidoreductase; NMR {Chlamydomonas reinhardtii} SCOP: c.47.1.1
Probab=51.86 E-value=4.7 Score=24.58 Aligned_cols=69 Identities=17% Similarity=0.279 Sum_probs=36.1
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCee-------eEEEecCCCcH-H
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPGC-------YTLAVSEALPE-D 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG~-------YAi~V~g~lp~-~ 98 (115)
.|....||.|... ....+-....|.+ ++.+--.+...+++.+++.. +|-. ..-+..|..+. +
T Consensus 25 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~ 97 (107)
T 1dby_A 25 DFWAPWCGPCRII------APVVDEIAGEYKDKLKCVKLNTDESPNVASEYGIRS-IPTIMVFKGGKKCETIIGAVPKAT 97 (107)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHHTCCS-SCEEEEESSSSEEEEEESCCCHHH
T ss_pred EEECCCCHhHHHH------HHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCCc-CCEEEEEeCCEEEEEEeCCCCHHH
Confidence 3556789999721 0111112223332 33332234567999999875 5543 33345676664 5
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 98 l~~~l~~ 104 (107)
T 1dby_A 98 IVQTVEK 104 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 36
>1yuz_A Nigerythrin; rubrythrin, rubredoxin, hemerythrin, electron transfer, DIIR center, oxidoreductase; 1.40A {Desulfovibrio vulgaris subsp} SCOP: a.25.1.1 g.41.5.1 PDB: 1yv1_A 1yux_A
Probab=51.76 E-value=5.1 Score=29.83 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=18.0
Q ss_pred cccccccCcccccchhhccCCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
..--|..|++|...+. -..||.|+.
T Consensus 170 ~~~~C~~CG~i~~g~~--p~~CP~C~~ 194 (202)
T 1yuz_A 170 KFHLCPICGYIHKGED--FEKCPICFR 194 (202)
T ss_dssp CEEECSSSCCEEESSC--CSBCTTTCC
T ss_pred cEEEECCCCCEEcCcC--CCCCCCCCC
Confidence 4567999999976421 146999983
No 37
>4rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.20A {Clostridium pasteurianum} SCOP: g.41.5.1 PDB: 5rxn_A 1bfy_A 1fhh_A 1fhm_A 1irn_A 1iro_A 1r0f_A 1r0g_A 1r0h_A 1r0i_A 1r0j_A 1t9q_A 1c09_A 1b2j_A 1b13_A 1smm_A 1smu_A 1smw_A 1be7_A 1t9o_A ...
Probab=51.33 E-value=6 Score=24.16 Aligned_cols=12 Identities=17% Similarity=0.429 Sum_probs=9.6
Q ss_pred cccccCcccccc
Q 046522 17 RACLRCRLVKTY 28 (115)
Q Consensus 17 rAC~~C~~I~t~ 28 (115)
--|..|++|-..
T Consensus 4 y~C~vCGyvYd~ 15 (54)
T 4rxn_A 4 YTCTVCGYIYDP 15 (54)
T ss_dssp EEETTTCCEECT
T ss_pred eECCCCCeEECC
Confidence 469999998765
No 38
>3f3q_A Thioredoxin-1; His TAG, electron transport, cytoplasm, deoxyribonucleotide synthesis, golgi apparatus, membrane, nucleus; 1.76A {Saccharomyces cerevisiae} PDB: 3f3r_A* 2i9h_A 2fa4_A 2hsy_A 3pin_A 4dss_B
Probab=49.93 E-value=4.7 Score=25.32 Aligned_cols=69 Identities=14% Similarity=0.194 Sum_probs=40.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccc--eEEEEeCCChhHHHHHHhcCCCCC-------eeeEEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFN--GIISVMDPTRSWAARWLRIGRFVP-------GCYTLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~--G~I~i~dP~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp~~i~ 100 (115)
.|....||.|..+ ...-++ ....+. .++.|--.+...+++.++|.. +| |...-++.|.-|+++.
T Consensus 30 ~f~a~wC~~C~~~--~p~l~~----l~~~~~~~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 102 (109)
T 3f3q_A 30 DFYATWCGPCKMI--APMIEK----FSEQYPQADFYKLDVDELGDVAQKNEVSA-MPTLLLFKNGKEVAKVVGANPAAIK 102 (109)
T ss_dssp EEECTTCHHHHHH--HHHHHH----HHHHCTTSEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESSCHHHHH
T ss_pred EEECCcCHhHHHH--HHHHHH----HHHHCCCCEEEEEECCCCHHHHHHcCCCc-cCEEEEEECCEEEEEEeCCCHHHHH
Confidence 4666789999821 111112 222332 344443445578899999876 45 4444456677788888
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 103 ~~i~~ 107 (109)
T 3f3q_A 103 QAIAA 107 (109)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 87764
No 39
>3dh3_A Ribosomal large subunit pseudouridine synthase F; protein-RNA complex, S4 domain, alpha/beta protein, isomerase, RNA-binding, rRNA processing; HET: FHU; 3.00A {Escherichia coli}
Probab=48.06 E-value=41 Score=26.16 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=36.3
Q ss_pred ceEEEEeCCChhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhcCCee
Q 046522 60 NGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQY 110 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~gi~y 110 (115)
+|+|.+.+-. .+..+.+.-...+.=.|-+.|.|.++++.++.|. .|+..
T Consensus 111 SGLllla~d~-~~~~~L~~~~~~v~K~Y~a~V~G~~~~~~i~~l~-~Gv~l 159 (290)
T 3dh3_A 111 QGLIFLTNHG-DLVNKILRAGNDHEKEYLVTVDKPITEEFIRGMS-AGVPI 159 (290)
T ss_dssp EEEEEEESCT-THHHHHHCGGGCCCEEEEEEESSCCCHHHHHHHH-TCCBC
T ss_pred cceEEEcCCH-HHHHHHHHhhCCcCEEEEEEECCCCCHHHHHHHh-cCccc
Confidence 7999998753 3555555444557889999999999999888774 46643
No 40
>2zjr_Z 50S ribosomal protein L32; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: g.41.8.5 PDB: 1j5a_M* 1jzy_M* 1jzz_M* 1k01_M* 1nkw_Z 1ond_Z* 1sm1_Z* 1yl3_5 2b66_5 2b9n_5 2b9p_5 2zjp_Y* 2zjq_Z 1jzx_M 3cf5_Y* 3dll_Y* 3pio_Z* 3pip_Z* 1nwy_Z* 1nwx_Z* ...
Probab=47.42 E-value=7.3 Score=24.16 Aligned_cols=24 Identities=29% Similarity=0.656 Sum_probs=17.6
Q ss_pred ccccccccCcccccchhhccCCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
..+-.|..|+-..-.-. -||+|++
T Consensus 28 p~l~~c~~cG~~~~pH~----vc~~CG~ 51 (60)
T 2zjr_Z 28 PNLTECPQCHGKKLSHH----ICPNCGY 51 (60)
T ss_dssp CCCEECTTTCCEECTTB----CCTTTCB
T ss_pred CCceECCCCCCEeCCce----EcCCCCc
Confidence 36788999998864432 5999983
No 41
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=47.02 E-value=13 Score=26.94 Aligned_cols=23 Identities=26% Similarity=0.741 Sum_probs=19.3
Q ss_pred ccccccccCcccccchhhccCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
-+.-.|..|+..++..+ .||+|+
T Consensus 56 ~~~vlCg~C~~~q~~~~----~C~~Cg 78 (143)
T 2dkt_A 56 VKEVQCINCEKLQHAQQ----TCEDCS 78 (143)
T ss_dssp CCCEEESSSCCEECSCS----BCSSSC
T ss_pred cceeeecccCccccccC----cCCCCC
Confidence 35789999999998765 599998
No 42
>3hxs_A Thioredoxin, TRXP; electron transport; 2.00A {Bacteroides fragilis} PDB: 3hyp_A
Probab=43.77 E-value=16 Score=23.50 Aligned_cols=69 Identities=22% Similarity=0.309 Sum_probs=38.2
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCeeeEE-------EecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPGCYTL-------AVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp-~~ 98 (115)
.|....||.|... ...-++ ....|.+ ++.|--.+...+++.++|.. +|-.+-+ ...|.++ ++
T Consensus 57 ~f~a~wC~~C~~~--~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~~g~~~~~~G~~~~~~ 129 (141)
T 3hxs_A 57 DFYADWCGPCKMV--APILEE----LSKEYAGKIYIYKVNVDKEPELARDFGIQS-IPTIWFVPMKGEPQVNMGALSKEQ 129 (141)
T ss_dssp EEECTTCTTHHHH--HHHHHH----HHHHTTTTCEEEEEETTTCHHHHHHTTCCS-SSEEEEECSSSCCEEEESCCCHHH
T ss_pred EEECCCCHHHHHH--HHHHHH----HHHHhcCceEEEEEECCCCHHHHHHcCCCC-cCEEEEEeCCCCEEEEeCCCCHHH
Confidence 4667789999821 111122 2333332 23333344568999999875 6665554 4455555 55
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|+.
T Consensus 130 l~~~l~~ 136 (141)
T 3hxs_A 130 LKGYIDK 136 (141)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
No 43
>2xc2_A Thioredoxinn; oxidoreductase, protein disulfide reductase; 1.56A {Schistosoma mansoni} PDB: 2xbq_A 2xbi_A
Probab=43.16 E-value=6.8 Score=24.55 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=38.2
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCC-hhHHHHHHhcCCCCCeee-------EEEecCCCcHHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPT-RSWAARWLRIGRFVPGCY-------TLAVSEALPEDLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~-~SwVAk~l~i~~~~pG~Y-------Ai~V~g~lp~~i~~ 101 (115)
.|....||.|... ....+-....|.=.++.+|-+ ...+++.+++.. +|-.+ .-+..|.-++++.+
T Consensus 39 ~f~a~wC~~C~~~------~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~~ 111 (117)
T 2xc2_A 39 DFFATWCGPCKTI------APLFKELSEKYDAIFVKVDVDKLEETARKYNISA-MPTFIAIKNGEKVGDVVGASIAKVED 111 (117)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHTTSSSEEEEEETTTSHHHHHHTTCCS-SSEEEEEETTEEEEEEESSCHHHHHH
T ss_pred EEECCCCHhHHHH------hHHHHHHHHHcCcEEEEEECCccHHHHHHcCCCc-cceEEEEeCCcEEEEEeCCCHHHHHH
Confidence 4666789999721 111111233332233334544 467899999875 55433 33355655777777
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 112 ~l~~ 115 (117)
T 2xc2_A 112 MIKK 115 (117)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7764
No 44
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=42.90 E-value=11 Score=26.11 Aligned_cols=24 Identities=25% Similarity=0.602 Sum_probs=16.9
Q ss_pred ccccccCcccccchhhcc-CCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRE-SGCENCP 40 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~-~gCpnC~ 40 (115)
.-.|+.|++.- .+.+.. ..||.|+
T Consensus 67 p~~C~~CG~~F-~~~~~kPsrCP~Ck 91 (105)
T 2gmg_A 67 PAQCRKCGFVF-KAEINIPSRCPKCK 91 (105)
T ss_dssp CCBBTTTCCBC-CCCSSCCSSCSSSC
T ss_pred CcChhhCcCee-cccCCCCCCCcCCC
Confidence 45799999985 223223 5799998
No 45
>3m9j_A Thioredoxin; oxidoreductase; 1.10A {Homo sapiens} SCOP: c.47.1.1 PDB: 3m9k_A 2hsh_A 1erv_A 2ifq_A 2ifq_B 1auc_A 1eru_A 1ert_A 3kd0_A 1aiu_A 3trx_A 4trx_A 1trs_A 1tru_A 1trv_A 1trw_A 3e3e_A* 1cqg_A 1cqh_A 1mdi_A ...
Probab=41.59 E-value=7 Score=23.61 Aligned_cols=69 Identities=16% Similarity=0.234 Sum_probs=38.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE--EEEeCCChhHHHHHHhcCCCCC-------eeeEEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI--ISVMDPTRSWAARWLRIGRFVP-------GCYTLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~--I~i~dP~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp~~i~ 100 (115)
.|...+||.|... ....+-....|.++ +.+--.+...+++.+++.. +| |..--+..|.-++++.
T Consensus 26 ~f~~~~C~~C~~~------~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~l~ 98 (105)
T 3m9j_A 26 DFSATWCGPCKMI------KPFFHSLSEKYSNVIFLEVDVDDCQDVASESEVKS-MPTFQFFKKGQKVGEFSGANKEKLE 98 (105)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHSTTSEEEEEETTTCHHHHHHTTCCB-SSEEEEEETTEEEEEEESSCHHHHH
T ss_pred EEECCCChhhHHH------HHHHHHHHHHccCeEEEEEEhhhhHHHHHHcCCCc-CcEEEEEECCeEEEEEeCCCHHHHH
Confidence 3666789999721 11112233344442 2332334568899999876 55 4443445677667777
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 99 ~~l~~ 103 (105)
T 3m9j_A 99 ATINE 103 (105)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 46
>2oml_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, thrombin-cleaved, isomerase; 1.20A {Escherichia coli}
Probab=40.82 E-value=94 Score=21.96 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=31.0
Q ss_pred ceEEEEeCCChhHHHHHH-hcCCCCCeeeEEEecCCCcHHHHHHHH
Q 046522 60 NGIISVMDPTRSWAARWL-RIGRFVPGCYTLAVSEALPEDLQNLCE 104 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l-~i~~~~pG~YAi~V~g~lp~~i~~~l~ 104 (115)
+|+|.+.+- ...|+.+ .....+.=.|-..|.|.++++.+..++
T Consensus 55 SGlll~ak~--~~~~~~l~~~~~~v~K~Y~a~v~G~~~~~~~~~i~ 98 (189)
T 2oml_A 55 EGLLVLTNN--GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 98 (189)
T ss_dssp EEEEEEESC--HHHHHHHHSTTSCCCEEEEEEEESCCCHHHHHHHH
T ss_pred eeEEEEEcC--HHHHHHHhCccCCCcEEEEEEEcCCCCHHHHHHHH
Confidence 799998764 4444444 444568889999999999988655554
No 47
>2oe3_A Thioredoxin-3; electron transport, alpha/beta sandwich, oxidized, dimer; 1.80A {Saccharomyces cerevisiae} PDB: 2oe1_A 2oe0_A
Probab=40.36 E-value=9.5 Score=24.25 Aligned_cols=69 Identities=14% Similarity=0.204 Sum_probs=38.5
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE-EEEeCCC-hhHHHHHHhcCCCCCee-------eEEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI-ISVMDPT-RSWAARWLRIGRFVPGC-------YTLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~-I~i~dP~-~SwVAk~l~i~~~~pG~-------YAi~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....+.++ ++.+|-+ ...+++.+++.. +|-. ..-++.|..++++.
T Consensus 36 ~F~a~wC~~C~~~------~p~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 108 (114)
T 2oe3_A 36 DFYATWCGPCKMM------QPHLTKLIQAYPDVRFVKCDVDESPDIAKECEVTA-MPTFVLGKDGQLIGKIIGANPTALE 108 (114)
T ss_dssp EEECTTCHHHHHT------HHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS-BSEEEEEETTEEEEEEESSCHHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHCCCCEEEEEECCCCHHHHHHCCCCc-ccEEEEEeCCeEEEEEeCCCHHHHH
Confidence 4667789999822 11111223334332 2223433 467899998875 5543 33345666677887
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 109 ~~l~~ 113 (114)
T 2oe3_A 109 KGIKD 113 (114)
T ss_dssp HHHHT
T ss_pred HHHHh
Confidence 77764
No 48
>3cxg_A Putative thioredoxin; malaria, structural GEN oxidoreductase, structural genomics consortium, SGC; 2.00A {Plasmodium falciparum}
Probab=40.28 E-value=20 Score=23.40 Aligned_cols=69 Identities=13% Similarity=0.142 Sum_probs=40.3
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEE-EeCC-ChhHHHHHHhcCCCCCeeeEE-----------EecCCCc
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIIS-VMDP-TRSWAARWLRIGRFVPGCYTL-----------AVSEALP 96 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~-i~dP-~~SwVAk~l~i~~~~pG~YAi-----------~V~g~lp 96 (115)
.|....||-|..+ ....+-....| +++. -+|- +...+++.++|.. +|-.+-+ ++.|.-+
T Consensus 46 ~F~a~wC~~C~~~------~p~l~~l~~~~-~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~~~g~g~~~~~~~G~~~ 117 (133)
T 3cxg_A 46 KFGAVWCKPCNKI------KEYFKNQLNYY-YVTLVDIDVDIHPKLNDQHNIKA-LPTFEFYFNLNNEWVLVHTVEGANQ 117 (133)
T ss_dssp EEECTTCHHHHHT------HHHHHGGGGTE-ECEEEEEETTTCHHHHHHTTCCS-SSEEEEEEEETTEEEEEEEEESCCH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHhc-CEEEEEEeccchHHHHHhcCCCC-CCEEEEEEecCCCeEEEEEEcCCCH
Confidence 4667789999822 11222244445 3332 2443 3467899999875 5655443 3556667
Q ss_pred HHHHHHHHhc
Q 046522 97 EDLQNLCEDE 106 (115)
Q Consensus 97 ~~i~~~l~~~ 106 (115)
+++.+.|++.
T Consensus 118 ~~l~~~l~~~ 127 (133)
T 3cxg_A 118 NDIEKAFQKY 127 (133)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7787777653
No 49
>2yj7_A LPBCA thioredoxin; oxidoreductase; 1.65A {Synthetic construct}
Probab=46.43 E-value=5.9 Score=23.64 Aligned_cols=53 Identities=15% Similarity=0.359 Sum_probs=27.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEE--eCCC-hhHHHHHHhcCCCCCeeeEE
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISV--MDPT-RSWAARWLRIGRFVPGCYTL 89 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i--~dP~-~SwVAk~l~i~~~~pG~YAi 89 (115)
.|....||.|.... . ..+-....|.+-+.+ ++.+ ...+++.+++.. +|-.+-+
T Consensus 25 ~f~~~~C~~C~~~~--~----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~ 80 (106)
T 2yj7_A 25 DFWAPWCGPCRMIA--P----IIEELAKEYEGKVKVVKVNVDENPNTAAQYGIRS-IPTLLLF 80 (106)
Confidence 35567899998221 1 112234445432222 3332 456888888765 5654443
No 50
>3qfa_C Thioredoxin; protein-protein complex, rossmann fold, HO pyridine nucleotide disulfide oxidoreductase, electron TRAN oxidoreductase; HET: FAD; 2.20A {Homo sapiens} PDB: 3qfb_C*
Probab=40.13 E-value=12 Score=23.77 Aligned_cols=69 Identities=14% Similarity=0.182 Sum_probs=39.7
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE--EEEeCCChhHHHHHHhcCCCCC-------eeeEEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI--ISVMDPTRSWAARWLRIGRFVP-------GCYTLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~--I~i~dP~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....|.++ +.|--.+...+++.++|.. +| |...-++.|.-++++.
T Consensus 37 ~F~a~wC~~C~~~------~p~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 109 (116)
T 3qfa_C 37 DFSATWCGPSKMI------KPFFHSLSEKYSNVIFLEVDVDDCQDVASECEVKS-MPTFQFFKKGQKVGEFSGANKEKLE 109 (116)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHTTCTTSEEEEEETTTTHHHHHHTTCCS-SSEEEEESSSSEEEEEESCCHHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHCCCCEEEEEECCCCHHHHHHcCCcc-ccEEEEEeCCeEEEEEcCCCHHHHH
Confidence 4667789999821 11222234445443 2332334578999999876 44 4444456666666677
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 110 ~~l~~ 114 (116)
T 3qfa_C 110 ATINE 114 (116)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 51
>1thx_A Thioredoxin, thioredoxin 2; oxido-reductase, electron transport; 1.60A {Nostoc SP} SCOP: c.47.1.1
Probab=40.08 E-value=14 Score=22.53 Aligned_cols=69 Identities=10% Similarity=0.308 Sum_probs=36.9
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCeeeEE-------EecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPGCYTL-------AVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp-~~ 98 (115)
.|....||.|... ....+-....|.+ ++.|--.+...+++.+++.. +|-.+-+ +..|..+ ++
T Consensus 31 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~~ 103 (115)
T 1thx_A 31 YFWASWCGPCQLM------SPLINLAANTYSDRLKVVKLEIDPNPTTVKKYKVEG-VPALRLVKGEQILDSTEGVISKDK 103 (115)
T ss_dssp EEECTTCTTHHHH------HHHHHHHHHHTTTTCEEEEEESTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCCHHHHHh------HHHHHHHHHHhCCcEEEEEEEcCCCHHHHHHcCCCc-eeEEEEEcCCEEEEEecCCCCHHH
Confidence 4666789999721 1111112233332 33332234567899999875 6655553 3455554 56
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 104 l~~~l~~ 110 (115)
T 1thx_A 104 LLSFLDT 110 (115)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666653
No 52
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=39.61 E-value=9.7 Score=26.77 Aligned_cols=26 Identities=15% Similarity=0.295 Sum_probs=17.9
Q ss_pred ccccccccCcccccchhhccCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
....-|..|+-+.+... ...-||.|+
T Consensus 130 ~~~y~C~~Cg~~~~~~~-~~~~Cp~CG 155 (165)
T 2lcq_A 130 KWRYVCIGCGRKFSTLP-PGGVCPDCG 155 (165)
T ss_dssp CCCEEESSSCCEESSCC-GGGBCTTTC
T ss_pred cEEEECCCCCCcccCCC-CCCcCCCCC
Confidence 35678999998766321 113599998
No 53
>2fsv_C NAD(P) transhydrogenase subunit beta; NAD(P) transhydrogenase subunits, oxidoreductas; HET: NAD NAP; 2.30A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1e3t_A* 1hzz_C* 1nm5_C* 1u28_C* 1u2d_C* 1u2g_C* 2fr8_C* 2frd_C*
Probab=39.60 E-value=24 Score=27.03 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=34.0
Q ss_pred hHHHHHHhcCCCCCeeeEEE-ecCCCcHHHHHHHHhcCCeec
Q 046522 71 SWAARWLRIGRFVPGCYTLA-VSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~-V~g~lp~~i~~~l~~~gi~y~ 111 (115)
..+++.|+- +-+.-+|||- |-|++|-+.--.|.+.+++|-
T Consensus 67 ~el~~~L~~-~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd 107 (203)
T 2fsv_C 67 REMADVLKK-EGVEVSYAIHPVAGRMPGHMNVLLAEANVPYD 107 (203)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTCSSSTTHHHHHHHHTTCCGG
T ss_pred HHHHHHHHH-cCCeEEEEecccccCCCCCccEEEEEecCCHH
Confidence 667777763 3478899999 999999999999999999994
No 54
>2bzw_B BCL2-antagonist of cell death; transcription, apoptosis, phosphorylation, transcription complex, alternative splicing, mitochondrion; 2.3A {Mus musculus} PDB: 1g5j_B
Probab=39.51 E-value=14 Score=19.76 Aligned_cols=11 Identities=36% Similarity=0.722 Sum_probs=9.2
Q ss_pred CChhHHHHHHh
Q 046522 68 PTRSWAARWLR 78 (115)
Q Consensus 68 P~~SwVAk~l~ 78 (115)
|-.||+|+..|
T Consensus 2 p~~~~~A~rYG 12 (27)
T 2bzw_B 2 PPNLWAAQRYG 12 (27)
T ss_dssp CGGGHHHHHHH
T ss_pred chhHHHHHHHh
Confidence 66899999876
No 55
>2fcj_A Small toprim domain protein; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: MES; 1.30A {Geobacillus stearothermophilus} SCOP: c.136.1.1 PDB: 2i5r_A*
Probab=39.31 E-value=25 Score=24.42 Aligned_cols=52 Identities=15% Similarity=0.141 Sum_probs=37.5
Q ss_pred CccceEEEEeCCChh--HHHHHHh----cCC--CCCeeeEEEecCCCcHHHHHHHHhcCCe
Q 046522 57 PNFNGIISVMDPTRS--WAARWLR----IGR--FVPGCYTLAVSEALPEDLQNLCEDERVQ 109 (115)
Q Consensus 57 ~~f~G~I~i~dP~~S--wVAk~l~----i~~--~~pG~YAi~V~g~lp~~i~~~l~~~gi~ 109 (115)
..-.|+|+++||+.+ -+.|++. --+ |+|-.|+ -|..--|++|.+.|++.+..
T Consensus 48 ~~~r~VIi~TD~D~~GekIRk~i~~~lp~~~hafi~r~~~-gVE~a~~~~I~~aL~~~~~~ 107 (119)
T 2fcj_A 48 LEGYDVYLLADADEAGEKLRRQFRRMFPEAEHLYIDRAYR-EVAAAPIWHLAQVLLRARFD 107 (119)
T ss_dssp TTTSEEEEECCSSHHHHHHHHHHHHHCTTSEEECCCTTTC-STTTSCHHHHHHHHHHTTCC
T ss_pred hcCCCEEEEECCCccHHHHHHHHHHHCCCCcEEeccCCcc-CcccCCHHHHHHHHHhcccc
Confidence 347899999999873 4555442 111 5666665 78888999999999988654
No 56
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2, protein STRU initiative; NMR {Bacteroides vulgatus}
Probab=39.10 E-value=7.6 Score=25.30 Aligned_cols=70 Identities=17% Similarity=0.368 Sum_probs=37.0
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeCC-ChhHHHHHHhcCCCCCeeeEE-------EecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMDP-TRSWAARWLRIGRFVPGCYTL-------AVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~dP-~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp-~~ 98 (115)
.|....||.|..+ ....+-....|.+ .++.+|- +...+++.+++.. +|-.+-+ ...|.++ ++
T Consensus 44 ~f~a~wC~~C~~~------~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~~G~~~~~~G~~~~~~ 116 (136)
T 2l5l_A 44 DFYADWCGPCKMV------APILDELAKEYDGQIVIYKVDTEKEQELAGAFGIRS-IPSILFIPMEGKPEMAQGAMPKAS 116 (136)
T ss_dssp EEECTTSHHHHHH------HHHHHHHHHHTTTTCEEEEEETTTCHHHHHHTTCCS-SCEEEEECSSSCCEEEESCCCHHH
T ss_pred EEECCcCHHHHHH------HHHHHHHHHHhcCCEEEEEEeCCCCHHHHHHcCCCC-CCEEEEECCCCcEEEEeCCCCHHH
Confidence 4666789999721 0111112233332 2222333 3467899999875 6766554 3344444 56
Q ss_pred HHHHHHhc
Q 046522 99 LQNLCEDE 106 (115)
Q Consensus 99 i~~~l~~~ 106 (115)
+.+.|++.
T Consensus 117 l~~~l~~~ 124 (136)
T 2l5l_A 117 FKKAIDEF 124 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66666644
No 57
>1djl_A Transhydrogenase DIII; rossmann fold dinucleotide binding fold reverse binding of N oxidoreductase; HET: NAP; 2.00A {Homo sapiens} SCOP: c.31.1.4 PDB: 1pt9_A* 1u31_A*
Probab=38.96 E-value=25 Score=27.02 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=34.1
Q ss_pred hHHHHHHhcCCCCCeeeEEE-ecCCCcHHHHHHHHhcCCeec
Q 046522 71 SWAARWLRIGRFVPGCYTLA-VSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~-V~g~lp~~i~~~l~~~gi~y~ 111 (115)
..+++.|+- +-+.-+|||- |-|++|-+.--.|.+.+++|-
T Consensus 66 ~el~~~L~~-~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd 106 (207)
T 1djl_A 66 ADLVKMLTE-QGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYD 106 (207)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTCSSSTTHHHHHHHHTTCCGG
T ss_pred HHHHHHHHH-CCCeEEEEeCccCCCCCCCCcEEEEEeCCCHH
Confidence 667777763 3478899999 999999999999999999993
No 58
>3hz4_A Thioredoxin; NYSGXRC, PSI-II, reduced form, protein structure initiative, structural genomics; 2.30A {Methanosarcina mazei}
Probab=37.83 E-value=6.3 Score=25.94 Aligned_cols=69 Identities=16% Similarity=0.310 Sum_probs=38.5
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeC-CChhHHHHHHhcCC------CCCeeeEEEecCCCc-HHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMD-PTRSWAARWLRIGR------FVPGCYTLAVSEALP-EDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~d-P~~SwVAk~l~i~~------~~pG~YAi~V~g~lp-~~i 99 (115)
.|....|+.|..+ ....+-....+.+ .++.+| -+...+++.++|.. +..|....+..|..+ +++
T Consensus 30 ~F~a~wC~~C~~~------~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~G~~~~~~~G~~~~~~l 103 (140)
T 3hz4_A 30 MFYSPACPYCKAM------EPYFEEYAKEYGSSAVFGRINIATNPWTAEKYGVQGTPTFKFFCHGRPVWEQVGQIYPSIL 103 (140)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHHTTTSEEEEEETTTCHHHHHHHTCCEESEEEEEETTEEEEEEESSCCHHHH
T ss_pred EEECCCChhHHHH------HHHHHHHHHHhCCceEEEEEECCcCHhHHHHCCCCcCCEEEEEeCCcEEEEEcCCCCHHHH
Confidence 4666789999821 1122223444554 223334 34568899999876 224555446667764 555
Q ss_pred HHHHH
Q 046522 100 QNLCE 104 (115)
Q Consensus 100 ~~~l~ 104 (115)
.+.|+
T Consensus 104 ~~~l~ 108 (140)
T 3hz4_A 104 KNAVR 108 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 59
>3iyk_G VP2; icosahedral virus; HET: MNA; 7.00A {Bluetongue virus}
Probab=37.10 E-value=16 Score=32.14 Aligned_cols=27 Identities=19% Similarity=0.274 Sum_probs=23.3
Q ss_pred CCCCCeeeEEEecCCCcHHHHHHHHhc
Q 046522 80 GRFVPGCYTLAVSEALPEDLQNLCEDE 106 (115)
Q Consensus 80 ~~~~pG~YAi~V~g~lp~~i~~~l~~~ 106 (115)
.++..|.+++.|.|..|+.|.+++.+-
T Consensus 232 ~~~~~G~v~~~V~g~~p~~I~~ei~~L 258 (600)
T 3iyk_G 232 DKMVEGLTHLVIRGKTPEVIRDDIASL 258 (600)
T ss_pred HHHhcceeEEEEccCChHHHHHHHHHH
Confidence 456799999999999999999887653
No 60
>2con_A RUH-035 protein, NIN one binding protein; ribosome, RNA binding protein, unknown function, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.41.15.1
Probab=36.42 E-value=27 Score=22.77 Aligned_cols=26 Identities=15% Similarity=0.269 Sum_probs=18.5
Q ss_pred ccccccccCcccccchhhccCCCCCCCC
Q 046522 14 HELRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
+-...|-.|-.+.... .+.-||+|+.
T Consensus 13 ~~iLrC~aCf~~t~~~--~k~FCp~CGn 38 (79)
T 2con_A 13 SYILRCHGCFKTTSDM--NRVFCGHCGN 38 (79)
T ss_dssp CEEEECSSSCCEESCS--SCCSCSSSCC
T ss_pred eeeeEecccceECCCc--ccccccccCc
Confidence 4578899999887643 1233999993
No 61
>3tco_A Thioredoxin (TRXA-1); disulfide oxidoreductase, oxidoreductase; 1.90A {Sulfolobus solfataricus} SCOP: c.47.1.0
Probab=36.20 E-value=8.6 Score=23.19 Aligned_cols=69 Identities=12% Similarity=0.203 Sum_probs=37.1
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCe-------eeEEEecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPG-------CYTLAVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG-------~YAi~V~g~lp-~~ 98 (115)
.|....||.|... ....+-....|.+ ++.+--.+...+++.+++.. +|- ...-+..|..+ ++
T Consensus 27 ~f~~~~C~~C~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~-~Pt~~~~~~g~~~~~~~g~~~~~~ 99 (109)
T 3tco_A 27 DCWAEWCAPCHLY------EPIYKKVAEKYKGKAVFGRLNVDENQKIADKYSVLN-IPTTLIFVNGQLVDSLVGAVDEDT 99 (109)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHTTTTSEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCCHHHHhh------hHHHHHHHHHhCCCceEEEEccccCHHHHHhcCccc-CCEEEEEcCCcEEEeeeccCCHHH
Confidence 3667789999821 1111112333332 33333334568899999876 554 33344566655 45
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 100 l~~~l~~ 106 (109)
T 3tco_A 100 LESTVNK 106 (109)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6665553
No 62
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=36.17 E-value=10 Score=29.44 Aligned_cols=39 Identities=8% Similarity=0.037 Sum_probs=27.5
Q ss_pred HHHHHhcCCCCCeeeEE---EecCCCcHHHHHHHHhcCCeec
Q 046522 73 AARWLRIGRFVPGCYTL---AVSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 73 VAk~l~i~~~~pG~YAi---~V~g~lp~~i~~~l~~~gi~y~ 111 (115)
+|+.+--.+..+|.++- .+..++++.++++|+++||.+.
T Consensus 322 ~a~lil~g~i~~GV~~PE~l~~~~~~~~~~l~~L~~~GI~I~ 363 (365)
T 3abi_A 322 ISRIVAENTCTFGVIPPEILGMREDTFRRIIDELKERGISIE 363 (365)
T ss_dssp HHHHHHTTCSCSEEECTHHHHHSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHcCCCCCCEEChhhcccchhhHHHHHHHHHHCCCeee
Confidence 34555434456899864 3456677889999999999864
No 63
>3d6i_A Monothiol glutaredoxin-3; thioredoxin-like, electron transport, redox- active center, transport, oxidoreductase; HET: CME; 1.50A {Saccharomyces cerevisiae}
Probab=36.10 E-value=17 Score=22.23 Aligned_cols=69 Identities=23% Similarity=0.274 Sum_probs=36.2
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCc--cceE-EEEeC-CChhHHHHHHhcCCCCCee-------eEEEecCCCcHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPN--FNGI-ISVMD-PTRSWAARWLRIGRFVPGC-------YTLAVSEALPED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~--f~G~-I~i~d-P~~SwVAk~l~i~~~~pG~-------YAi~V~g~lp~~ 98 (115)
.|....||.|... ...-++ .... +.++ ++.+| .+...+++.+++.. +|-. ..-+..|..+++
T Consensus 27 ~f~a~wC~~C~~~--~~~~~~----~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~ 99 (112)
T 3d6i_A 27 YFHTSWAEPCKAL--KQVFEA----ISNEPSNSNVSFLSIDADENSEISELFEISA-VPYFIIIHKGTILKELSGADPKE 99 (112)
T ss_dssp EEECCC--CHHHH--HHHHHH----HHHCGGGTTSEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEECSCCHHH
T ss_pred EEECCCCHHHHHH--HHHHHH----HHHhcCCCCEEEEEEecccCHHHHHHcCCCc-ccEEEEEECCEEEEEecCCCHHH
Confidence 3667789999721 011111 2222 1222 22234 34567899999875 5544 333466777888
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 100 l~~~l~~ 106 (112)
T 3d6i_A 100 YVSLLED 106 (112)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777764
No 64
>2vlu_A Thioredoxin, thioredoxin H isoform 2.; oxidoreductase, thioredoxin-fold, protein disulfide reductase; 1.70A {Hordeum vulgare var} PDB: 2vlt_A 2vlv_A 2iwt_A*
Probab=36.02 E-value=10 Score=23.74 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=38.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEE-EEeCC-ChhHHHHHHhcCCCCCeee-------EEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGII-SVMDP-TRSWAARWLRIGRFVPGCY-------TLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I-~i~dP-~~SwVAk~l~i~~~~pG~Y-------Ai~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....|.|+. +.+|- +...+++.+++.. +|-.+ .-+..|..++++.
T Consensus 40 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 112 (122)
T 2vlu_A 40 DFTASWCGPCRIM------APVFADLAKKFPNAVFLKVDVDELKPIAEQFSVEA-MPTFLFMKEGDVKDRVVGAIKEELT 112 (122)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESSCHHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHCCCcEEEEEECCCCHHHHHHcCCCc-ccEEEEEeCCEEEEEEeCcCHHHHH
Confidence 4666789999721 111112333444422 22343 3567899999875 56433 2345565677888
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 113 ~~l~~ 117 (122)
T 2vlu_A 113 AKVGL 117 (122)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 65
>2dml_A Protein disulfide-isomerase A6; thioredoxin domain-containing protein 7, endoplasmic reticulum, redox-active center, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=35.75 E-value=33 Score=21.49 Aligned_cols=69 Identities=7% Similarity=0.187 Sum_probs=36.4
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeCCC-hhHHHHHHhcCCCCCeeeEE--------EecCCCc-H
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMDPT-RSWAARWLRIGRFVPGCYTL--------AVSEALP-E 97 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~dP~-~SwVAk~l~i~~~~pG~YAi--------~V~g~lp-~ 97 (115)
.|....||.|..+ ...-++ ....+.+ .++.+|-+ ...+++.++|.. +|-.+-+ +..|..+ +
T Consensus 41 ~f~a~wC~~C~~~--~~~~~~----~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~~~~~~~~~~G~~~~~ 113 (130)
T 2dml_A 41 EFYAPWCGHCQRL--TPEWKK----AATALKDVVKVGAVNADKHQSLGGQYGVQG-FPTIKIFGANKNKPEDYQGGRTGE 113 (130)
T ss_dssp EEECTTCSTTGGG--HHHHHH----HHHHTTTTSEEEEEETTTCHHHHHHHTCCS-SSEEEEESSCTTSCEECCSCCSHH
T ss_pred EEECCCCHHHHhh--CHHHHH----HHHHhcCceEEEEEeCCCCHHHHHHcCCCc-cCEEEEEeCCCCeEEEeecCCCHH
Confidence 4666789999822 111112 2233333 22334433 467899999875 5655543 3455554 4
Q ss_pred HHHHHHHh
Q 046522 98 DLQNLCED 105 (115)
Q Consensus 98 ~i~~~l~~ 105 (115)
++.+.|.+
T Consensus 114 ~l~~~l~~ 121 (130)
T 2dml_A 114 AIVDAALS 121 (130)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 45555543
No 66
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=35.43 E-value=7.5 Score=24.95 Aligned_cols=21 Identities=19% Similarity=0.388 Sum_probs=15.2
Q ss_pred ccccCcccccchhhcc-CCCCCCC
Q 046522 18 ACLRCRLVKTYDQFRE-SGCENCP 40 (115)
Q Consensus 18 AC~~C~~I~t~~qf~~-~gCpnC~ 40 (115)
.|. |+...-.+...+ ..|| ||
T Consensus 6 ~C~-C~~~~~~~~~~kT~~C~-CG 27 (71)
T 1gh9_A 6 RCD-CGRALYSREGAKTRKCV-CG 27 (71)
T ss_dssp EET-TSCCEEEETTCSEEEET-TT
T ss_pred ECC-CCCEEEEcCCCcEEECC-CC
Confidence 588 888776665544 4799 99
No 67
>1ep7_A Thioredoxin CH1, H-type; electron transport; 2.10A {Chlamydomonas reinhardtii} SCOP: c.47.1.1 PDB: 1tof_A 1ep8_A
Probab=34.28 E-value=12 Score=22.85 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=36.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccc-e-EEEEeCC-ChhHHHHHHhcCCCCCee-------eEEEecCCCcHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFN-G-IISVMDP-TRSWAARWLRIGRFVPGC-------YTLAVSEALPEDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~-G-~I~i~dP-~~SwVAk~l~i~~~~pG~-------YAi~V~g~lp~~i 99 (115)
.|....||.|..+ ....+-....|. + .++.+|. +...+++.+++.. +|-. ..-+..|.-++++
T Consensus 30 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l 102 (112)
T 1ep7_A 30 DFTATWCGPCKMI------APLFETLSNDYAGKVIFLKVDVDAVAAVAEAAGITA-MPTFHVYKDGVKADDLVGASQDKL 102 (112)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHTTTTSEEEEEETTTTHHHHHHHTCCB-SSEEEEEETTEEEEEEESCCHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHcCCCeEEEEEECCchHHHHHHcCCCc-ccEEEEEECCeEEEEEcCCCHHHH
Confidence 3566789999721 011111223333 2 2233344 3467899999875 5543 3334456556777
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 103 ~~~l~~ 108 (112)
T 1ep7_A 103 KALVAK 108 (112)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776664
No 68
>2olw_A Ribosomal large subunit pseudouridine synthase E; bifurcated beta sheet, isomerase; 1.60A {Escherichia coli}
Probab=34.21 E-value=1.3e+02 Score=21.89 Aligned_cols=43 Identities=14% Similarity=0.176 Sum_probs=31.1
Q ss_pred ceEEEEeCCChhHHHHHH-hcCCCCCeeeEEEecCCCcHHHHHHHH
Q 046522 60 NGIISVMDPTRSWAARWL-RIGRFVPGCYTLAVSEALPEDLQNLCE 104 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l-~i~~~~pG~YAi~V~g~lp~~i~~~l~ 104 (115)
+|+|.+.+- ...|+.+ .....+.=.|-+.|.|.++++.+..++
T Consensus 83 SGllllAk~--~~~~~~L~~~~~~v~K~Y~A~V~G~~~~~~~~~i~ 126 (217)
T 2olw_A 83 EGLLVLTNN--GALQARLTQPGKRTGKIYYVQVEGIPTQDALEALR 126 (217)
T ss_dssp EEEEEEESC--HHHHHHHHCTTCCCCEEEEEEEESCCCHHHHHHHH
T ss_pred eeEEEEEcC--HHHHHHHHcccccCCEEEEEEEccCCCHHHHHHHh
Confidence 799999764 4455554 444558888999999999988654453
No 69
>1xwb_A Thioredoxin; dimerization, redox regulation, THI X-RAY electron transport; 2.20A {Drosophila melanogaster} SCOP: c.47.1.1 PDB: 1xw9_A 1xwc_A 1xwa_A
Probab=34.12 E-value=12 Score=22.49 Aligned_cols=69 Identities=14% Similarity=0.190 Sum_probs=36.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCcc-ce--EEEEeCCChhHHHHHHhcCCCCCe-------eeEEEecCCCcHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNF-NG--IISVMDPTRSWAARWLRIGRFVPG-------CYTLAVSEALPEDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f-~G--~I~i~dP~~SwVAk~l~i~~~~pG-------~YAi~V~g~lp~~i 99 (115)
.|....||.|... ....+-....+ .+ ++.+--.+...+++.+++.. +|- ...-+..|.-++++
T Consensus 26 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~l 98 (106)
T 1xwb_A 26 DFFATWCGPCKMI------SPKLVELSTQFADNVVVLKVDVDECEDIAMEYNISS-MPTFVFLKNGVKVEEFAGANAKRL 98 (106)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCHHHH
T ss_pred EEECCcCHHHHHh------hHHHHHHHHHhCCCeEEEEEeccchHHHHHHcCCCc-ccEEEEEcCCcEEEEEcCCCHHHH
Confidence 3566789999721 00111122233 22 23332233467899999875 554 33334556556777
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 99 ~~~i~~ 104 (106)
T 1xwb_A 99 EDVIKA 104 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 777664
No 70
>1mek_A Protein disulfide isomerase; electron transport, redox-active center, endoplasmic reticulum; NMR {Homo sapiens} SCOP: c.47.1.2
Probab=33.31 E-value=31 Score=20.85 Aligned_cols=73 Identities=12% Similarity=0.185 Sum_probs=36.7
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCC---CccceEEEEeCCChhHHHHHHhcCCCCCeeeEE---------EecCCC-c
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTT---PNFNGIISVMDPTRSWAARWLRIGRFVPGCYTL---------AVSEAL-P 96 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT---~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi---------~V~g~l-p 96 (115)
.|....||.|..+. ..-+++.+-.. .++. ++.+--.+...+++.+++.. +|-.+-+ +..|.. +
T Consensus 30 ~f~~~~C~~C~~~~--~~~~~~~~~~~~~~~~v~-~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~~~g~~~~ 105 (120)
T 1mek_A 30 EFYAPWCGHCKALA--PEYAKAAGKLKAEGSEIR-LAKVDATEESDLAQQYGVRG-YPTIKFFRNGDTASPKEYTAGREA 105 (120)
T ss_dssp EEECSSCSTTSTTH--HHHHHHHHTTTTTCCCCB-CEEEETTTCCSSHHHHTCCS-SSEEEEEESSCSSSCEECCCCSSH
T ss_pred EEECCCCHHHHHhh--HHHHHHHHHHhccCCcEE-EEEEcCCCCHHHHHHCCCCc-ccEEEEEeCCCcCCcccccCccCH
Confidence 46667899998321 11111211111 1111 23332233457888899875 6766554 333433 4
Q ss_pred HHHHHHHHhc
Q 046522 97 EDLQNLCEDE 106 (115)
Q Consensus 97 ~~i~~~l~~~ 106 (115)
+++.+.|++.
T Consensus 106 ~~l~~~l~~~ 115 (120)
T 1mek_A 106 DDIVNWLKKR 115 (120)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHHhc
Confidence 5666766653
No 71
>1pno_A NAD(P) transhydrogenase subunit beta; nucleotide binding fold, oxidoreductase; HET: NAP; 2.10A {Rhodospirillum rubrum} SCOP: c.31.1.4 PDB: 1pnq_A* 1xlt_C* 2oor_C* 1ptj_C* 2oo5_C*
Probab=33.21 E-value=35 Score=25.66 Aligned_cols=40 Identities=23% Similarity=0.270 Sum_probs=33.4
Q ss_pred hHHHHHHhcCCCCCeeeEEE-ecCCCcHHHHHHHHhcCCeec
Q 046522 71 SWAARWLRIGRFVPGCYTLA-VSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~-V~g~lp~~i~~~l~~~gi~y~ 111 (115)
..+++.|+- +-+.=+|||- |-|++|-..--.|.+.+++|-
T Consensus 44 ~el~~~L~~-~G~~V~faIHPVAGRMPGhmNVLLAEA~VPYd 84 (180)
T 1pno_A 44 REMADVLKK-EGVEVSYAIHPVAGRMPGHMNVLLAEANVPYD 84 (180)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTCTTSTTHHHHHHHHTTCCGG
T ss_pred HHHHHHHHH-CCCeEEEEeccccccCCCcceEEEEeeCCCHH
Confidence 456677763 3377899999 999999999999999999984
No 72
>2l6c_A Thioredoxin; oxidoreductase; NMR {Desulfovibrio vulgaris} PDB: 2l6d_A
Probab=33.13 E-value=18 Score=22.54 Aligned_cols=70 Identities=29% Similarity=0.406 Sum_probs=38.6
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE-EEEeC-CChhHHHHHHhcCCCCC-------eeeEEEecCCC-cHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI-ISVMD-PTRSWAARWLRIGRFVP-------GCYTLAVSEAL-PEDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~-I~i~d-P~~SwVAk~l~i~~~~p-------G~YAi~V~g~l-p~~i 99 (115)
.|....||.|... ....+-....+.++ +..+| .+...+++.+++.. +| |...-++.|.. ++++
T Consensus 25 ~f~a~wC~~C~~~------~~~l~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~v~~~~G~~~~~~l 97 (110)
T 2l6c_A 25 FFHKNLCPHCKNM------EKVLDKFGARAPQVAISSVDSEARPELMKELGFER-VPTLVFIRDGKVAKVFSGIMNPREL 97 (110)
T ss_dssp EEECSSCSTHHHH------HHHHHHHHTTCTTSCEEEEEGGGCHHHHHHTTCCS-SCEEEEEESSSEEEEEESCCCHHHH
T ss_pred EEECCCCHhHHHH------HHHHHHHHHHCCCcEEEEEcCcCCHHHHHHcCCcc-cCEEEEEECCEEEEEEcCCCCHHHH
Confidence 4667889999821 11112223333332 22233 34567899999875 55 44444566754 5566
Q ss_pred HHHHHhc
Q 046522 100 QNLCEDE 106 (115)
Q Consensus 100 ~~~l~~~ 106 (115)
.+.|+..
T Consensus 98 ~~~~~~~ 104 (110)
T 2l6c_A 98 QALYASI 104 (110)
T ss_dssp HHHHHTC
T ss_pred HHHHHHH
Confidence 6776644
No 73
>3v2d_5 50S ribosomal protein L32; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 2hgq_4 2hgj_4 2hgu_4 2j03_5 2jl6_5 2jl8_5 2v47_5 2v49_5 2wdi_5 2wdj_5 2wdl_5 2wdn_5 2wh2_5 2wh4_5 2wrj_5 2wrl_5 2wro_5 2wrr_5 2x9s_5 2x9u_5 ...
Probab=32.63 E-value=18 Score=22.35 Aligned_cols=22 Identities=27% Similarity=0.689 Sum_probs=15.5
Q ss_pred cccccccCcccccchhhccCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
.+-.|..|+-+.-.-. -||+||
T Consensus 29 ~l~~c~~cGe~~~~H~----vc~~CG 50 (60)
T 3v2d_5 29 TLVPCPECKAMKPPHT----VCPECG 50 (60)
T ss_dssp CCEECTTTCCEECTTS----CCTTTC
T ss_pred ceeECCCCCCeecceE----EcCCCC
Confidence 5778888887665433 488888
No 74
>2voc_A Thioredoxin; electron transport, homodimer, disulfide, transport, redox-active center; 1.50A {Bacillus subtilis} PDB: 2ipa_A 2gzy_A 2gzz_A
Probab=32.21 E-value=33 Score=21.19 Aligned_cols=70 Identities=16% Similarity=0.184 Sum_probs=37.0
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeCC-ChhHHHHHHhcCCCCCeeeE-------EEecCCCcH-H
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMDP-TRSWAARWLRIGRFVPGCYT-------LAVSEALPE-D 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~dP-~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~-~ 98 (115)
.|....||.|... ....+-....+.+ .++.+|- +...+++.+++.. +|-.+- -+..|..+. +
T Consensus 23 ~f~a~wC~~C~~~------~~~l~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~ 95 (112)
T 2voc_A 23 DFWAPWCGPSKMI------APVLEELDQEMGDKLKIVKIDVDENQETAGKYGVMS-IPTLLVLKDGEVVETSVGFKPKEA 95 (112)
T ss_dssp EEECTTBGGGGGH------HHHHHHHHHHHTTTCEEEEEETTTCCSHHHHTTCCS-BSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHhCCCcEEEEEECCCCHHHHHHcCCCc-ccEEEEEeCCEEEEEEeCCCCHHH
Confidence 4667789999821 1111112333332 2222333 3456899999875 554443 345677765 4
Q ss_pred HHHHHHhc
Q 046522 99 LQNLCEDE 106 (115)
Q Consensus 99 i~~~l~~~ 106 (115)
+.+.|++.
T Consensus 96 l~~~l~~~ 103 (112)
T 2voc_A 96 LQELVNKH 103 (112)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 55555543
No 75
>1ilo_A Conserved hypothetical protein MTH895; beta-alpha-beta-alpha-beta-BETA-alpha motif, structural genomics, PSI; NMR {Methanothermobacterthermautotrophicus str} SCOP: c.47.1.1
Probab=31.91 E-value=7 Score=22.49 Aligned_cols=50 Identities=14% Similarity=0.242 Sum_probs=24.6
Q ss_pred hccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeee
Q 046522 31 FRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCY 87 (115)
Q Consensus 31 f~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~Y 87 (115)
|...+||.|... ...-+++.+....++ .+.-+| +..+++.+++.. +|-.+
T Consensus 6 f~a~wC~~C~~~--~~~l~~~~~~~~~~~--~~~~v~--~~~~~~~~~v~~-~Pt~~ 55 (77)
T 1ilo_A 6 IYGTGCANCQML--EKNAREAVKELGIDA--EFEKIK--EMDQILEAGLTA-LPGLA 55 (77)
T ss_dssp EECSSSSTTHHH--HHHHHHHHHHTTCCE--EEEEEC--SHHHHHHHTCSS-SSCEE
T ss_pred EEcCCChhHHHH--HHHHHHHHHHcCCce--EEEEec--CHHHHHHCCCCc-CCEEE
Confidence 555689999721 011111222111111 122345 677888888865 56443
No 76
>3bvo_A CO-chaperone protein HSCB, mitochondrial precurso; structural genomics medical relev protein structure initiative, PSI-2; 3.00A {Homo sapiens}
Probab=31.32 E-value=20 Score=26.70 Aligned_cols=26 Identities=23% Similarity=0.568 Sum_probs=17.1
Q ss_pred cccccccCccc---ccchhhccCCCCCCCCCC
Q 046522 15 ELRACLRCRLV---KTYDQFRESGCENCPFFK 43 (115)
Q Consensus 15 ~lrAC~~C~~I---~t~~qf~~~gCpnC~~l~ 43 (115)
...+|-+|+.. .....|. |++|+.++
T Consensus 9 ~~~~Cw~C~~~~~~~~~~~~f---C~~c~~~q 37 (207)
T 3bvo_A 9 NYPRCWNCGGPWGPGREDRFF---CPQCRALQ 37 (207)
T ss_dssp --CBCSSSCCBCCSSCSCCCB---CTTTCCBC
T ss_pred CCCCCCCCCCCcccccccccc---cccccccC
Confidence 45789999985 3334443 99999543
No 77
>1v5i_B POIA1, IA-1=serine proteinase inhibitor; protease-inhibitor complex, subtilisin, hydrolase-Pro binding complex; 1.50A {Pleurotus ostreatus} SCOP: d.58.3.2 PDB: 1itp_A
Probab=31.19 E-value=64 Score=19.76 Aligned_cols=50 Identities=6% Similarity=0.021 Sum_probs=32.4
Q ss_pred EEEEeCCCh---------hHHHHHHhcCCCCCeee---EEE-ecCCCcHHHHHHHHhc---CCeecCCC
Q 046522 62 IISVMDPTR---------SWAARWLRIGRFVPGCY---TLA-VSEALPEDLQNLCEDE---RVQYVPPK 114 (115)
Q Consensus 62 ~I~i~dP~~---------SwVAk~l~i~~~~pG~Y---Ai~-V~g~lp~~i~~~l~~~---gi~y~prd 114 (115)
+|+++++.- +|+.+. + ..+-=.| +++ -.+.||++.++.|... .+.|.-.|
T Consensus 5 YIV~lk~~~~~~~~~~~~~~~~~~-g--g~i~~~y~~~~~~Gfa~~~~~~~l~~l~~~~~p~V~~VE~D 70 (76)
T 1v5i_B 5 FIVIFKNDVSEDKIRETKDEVIAE-G--GTITNEYNMPGMKGFAGELTPQSLTKFQGLQGDLIDSIEED 70 (76)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHHH-T--CCCCEEEEETTEEEEEEEECHHHHHHHHHTBTTTEEEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHHHHhh-C--CceEEEEEcCceeEEEEEcCHHHHHHHHhcCCCCCcEEcCC
Confidence 566676543 344443 2 2355566 455 4678999999999887 47777665
No 78
>1vio_A Ribosomal small subunit pseudouridine synthase A; structural genomics, lyase; 1.59A {Haemophilus influenzae} SCOP: d.265.1.3 d.66.1.5
Probab=31.07 E-value=1.2e+02 Score=22.33 Aligned_cols=48 Identities=15% Similarity=0.426 Sum_probs=33.9
Q ss_pred ceEEEEeCCChhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhcCCe
Q 046522 60 NGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQ 109 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~gi~ 109 (115)
+|++.+.+- ..+..+.+.-+..+.=.|-..|.|.++++.++.+.. |+.
T Consensus 108 sGlll~ak~-~~~a~~l~~~~~~v~K~Y~a~v~g~~~~~~i~~~~~-g~~ 155 (243)
T 1vio_A 108 TGLVLLTDD-GQWSHRITSPKHHCEKTYLVTLADPVEENYSAACAE-GIL 155 (243)
T ss_dssp EEEEEEESC-HHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHHH-CCC
T ss_pred eEEEEEEEC-HHHHHHHhCCCCCCCEEEEEEEeCCCCHHHHHHHhC-CeE
Confidence 799998764 234555555445688899999999999886665543 443
No 79
>2i4a_A Thioredoxin; acidophIle, disulfide exchange, oxidoreductase; 1.00A {Acetobacter aceti}
Probab=30.71 E-value=15 Score=22.07 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=36.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeC-CChhHHHHHHhcCCCCCeeeEE-------EecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMD-PTRSWAARWLRIGRFVPGCYTL-------AVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~d-P~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp-~~ 98 (115)
.|....||.|... ....+-....|.| .++.+| .+...+++.+++.. +|-.+-+ +..|..+ ++
T Consensus 26 ~f~~~~C~~C~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~ 98 (107)
T 2i4a_A 26 DFWAEWCGPCKMI------GPALGEIGKEFAGKVTVAKVNIDDNPETPNAYQVRS-IPTLMLVRDGKVIDKKVGALPKSQ 98 (107)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHHTTSEEEEEEETTTCCHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCChhHHHH------hHHHHHHHHHhCCcEEEEEEECCCCHHHHHhcCCCc-cCEEEEEeCCEEEEEecCCCCHHH
Confidence 3566789999721 1111123333432 222234 33467899999875 6655443 3456655 45
Q ss_pred HHHHHHh
Q 046522 99 LQNLCED 105 (115)
Q Consensus 99 i~~~l~~ 105 (115)
+.+.|++
T Consensus 99 l~~~l~~ 105 (107)
T 2i4a_A 99 LKAWVES 105 (107)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666654
No 80
>1d4o_A NADP(H) transhydrogenase; nucleotide-binding fold, protein-NADP(H) complex, inverted binding of NADP(H), oxidoreductase; HET: NAP; 1.21A {Bos taurus} SCOP: c.31.1.4
Probab=30.06 E-value=37 Score=25.61 Aligned_cols=40 Identities=18% Similarity=0.173 Sum_probs=33.4
Q ss_pred hHHHHHHhcCCCCCeeeEEE-ecCCCcHHHHHHHHhcCCeec
Q 046522 71 SWAARWLRIGRFVPGCYTLA-VSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~-V~g~lp~~i~~~l~~~gi~y~ 111 (115)
..+++.|+- +-+.=+|||- |-|++|-..--.|.+.+++|-
T Consensus 43 ~el~~~L~~-~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd 83 (184)
T 1d4o_A 43 ADLVKMLSE-QGKKVRFGIHPVAGRMPGQLNVLLAEAGVPYD 83 (184)
T ss_dssp HHHHHHHHH-TTCEEEEEECTTCSSSTTHHHHHHHHHTCCGG
T ss_pred HHHHHHHHH-CCCeEEEEeccccccCCCcceEEEEEecCCHH
Confidence 456777763 3377899999 999999999999999999993
No 81
>2kuc_A Putative disulphide-isomerase; structural genomics, thioredo PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=29.75 E-value=13 Score=23.48 Aligned_cols=74 Identities=15% Similarity=0.097 Sum_probs=38.4
Q ss_pred hhccCCCCCCC-CCCCCCCcccccccCCCccceEEEEeCC---ChhHHHHHHhcCCCCCeeeEE--------EecCCCc-
Q 046522 30 QFRESGCENCP-FFKMDEDHERVVDCTTPNFNGIISVMDP---TRSWAARWLRIGRFVPGCYTL--------AVSEALP- 96 (115)
Q Consensus 30 qf~~~gCpnC~-~l~m~~~~d~v~~~tT~~f~G~I~i~dP---~~SwVAk~l~i~~~~pG~YAi--------~V~g~lp- 96 (115)
.|....||.|. ....-...+.+.+....++ .++-++- +..-+++.+++.. +|-.+-+ +..|..+
T Consensus 33 ~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~--~~~~vd~~~~~~~~~~~~~~v~~-~Pt~~~~d~~G~~~~~~~G~~~~ 109 (130)
T 2kuc_A 33 DCFTTWCGPCKRLSKVVFKDSLVADYFNRHF--VNLKMDMEKGEGVELRKKYGVHA-YPTLLFINSSGEVVYRLVGAEDA 109 (130)
T ss_dssp EECCTTCTHHHHHHHHGGGCHHHHHHHHHHS--EEEEECSSSTTHHHHHHHTTCCS-SCEEEEECTTSCEEEEEESCCCH
T ss_pred EEECCCCccHHHHHHHhcCcHHHHHHHhcCe--EEEEEecCCcchHHHHHHcCCCC-CCEEEEECCCCcEEEEecCCCCH
Confidence 36667899997 2110000011211111122 2333454 3678999999875 5655554 3456655
Q ss_pred HHHHHHHHhc
Q 046522 97 EDLQNLCEDE 106 (115)
Q Consensus 97 ~~i~~~l~~~ 106 (115)
+++.+.|++.
T Consensus 110 ~~l~~~l~~~ 119 (130)
T 2kuc_A 110 PELLKKVKLG 119 (130)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566777654
No 82
>2e0q_A Thioredoxin; electron transport; 1.49A {Sulfolobus tokodaii} PDB: 3hhv_A
Probab=29.24 E-value=19 Score=21.18 Aligned_cols=69 Identities=12% Similarity=0.222 Sum_probs=36.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeCCChhHHHHHHhcCCCCCeeeE-------EEecCCCc-HHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMDPTRSWAARWLRIGRFVPGCYT-------LAVSEALP-EDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~dP~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp-~~i 99 (115)
.|....||.|... ....+-....+.| ++.+--.+...+++.+++.. +|-.+- -+..|..+ +++
T Consensus 22 ~f~~~~C~~C~~~------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~~l 94 (104)
T 2e0q_A 22 DFWAEWCAPCLIL------APIIEELAEDYPQVGFGKLNSDENPDIAARYGVMS-LPTVIFFKDGEPVDEIIGAVPREEI 94 (104)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS-SCEEEEEETTEEEEEEESCCCHHHH
T ss_pred EEECCCChhHHHH------hHHHHHHHHHcCCceEEEEECCCCHHHHHhCCccc-cCEEEEEECCeEhhhccCCCCHHHH
Confidence 3556789999821 1111112333333 33332334577999999875 565443 34456655 556
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 95 ~~~l~~ 100 (104)
T 2e0q_A 95 EIRIKN 100 (104)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666653
No 83
>1fb6_A Thioredoxin M; electron transport; 2.10A {Spinacia oleracea} SCOP: c.47.1.1 PDB: 1fb0_A 1gl8_A 2puk_C
Probab=29.21 E-value=16 Score=21.78 Aligned_cols=72 Identities=14% Similarity=0.226 Sum_probs=35.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeE-------EEecCCCcH-HHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYT-------LAVSEALPE-DLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~-~i~~ 101 (115)
.|....||.|... ...-+++.+-...++ -++.+--.+...+++.+++.. +|-.+- -+..|..+. ++.+
T Consensus 24 ~f~~~~C~~C~~~--~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 99 (105)
T 1fb6_A 24 DFWAPWCGPCKLI--APVIDELAKEYSGKI-AVYKLNTDEAPGIATQYNIRS-IPTVLFFKNGERKESIIGAVPKSTLTD 99 (105)
T ss_dssp EEECTTCHHHHHH--HHHHHHHHHHTTTTC-EEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEEECCCHHHHHH
T ss_pred EEECCCChHHHHH--HHHHHHHHHHhcCce-EEEEEcCcchHHHHHhCCCCc-ccEEEEEeCCeEEEEEecCCCHHHHHH
Confidence 3566789999721 001111222122221 223332334567899999875 565443 335566664 5656
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 100 ~l~~ 103 (105)
T 1fb6_A 100 SIEK 103 (105)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6553
No 84
>3a9j_C Mitogen-activated protein kinase kinase kinase 7- interacting protein 2; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 2wwz_C 2wx0_C 2wx1_C 3a9k_C
Probab=28.37 E-value=25 Score=18.78 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=18.1
Q ss_pred cccccccCcccccchhhccCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
..-+|..|.++..... ..|..|+
T Consensus 7 ~~W~C~~CT~~N~~~~---~~Ce~C~ 29 (34)
T 3a9j_C 7 AQWNCTACTFLNHPAL---IRCEQCE 29 (34)
T ss_dssp CCEECTTTCCEECTTC---SBCTTTC
T ss_pred CcCCCCCCccccCCCC---CeeCCCC
Confidence 4578999999988765 3599986
No 85
>2av4_A Thioredoxin-like protein 4A (DIM1); U5 snRNP-SPECIFIC 15KD prote structural genomics, structural genomics consortium, SGC, U function; 1.73A {Plasmodium yoelii}
Probab=28.37 E-value=2.7 Score=30.92 Aligned_cols=70 Identities=9% Similarity=0.143 Sum_probs=47.2
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE--EEEeCC-ChhHHHHHHhcCC------CCCeeeEE---------Ee
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI--ISVMDP-TRSWAARWLRIGR------FVPGCYTL---------AV 91 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~--I~i~dP-~~SwVAk~l~i~~------~~pG~YAi---------~V 91 (115)
.|....|+.|... +-+.+-.+..+.|. +.-+|- +...+|...+|.. |..|.... ++
T Consensus 47 dF~A~WCgPCk~m------~PvleelA~e~~~~v~f~kVDVDe~~e~a~~y~V~siPT~~fFk~G~~v~vd~Gtgd~~k~ 120 (160)
T 2av4_A 47 RFGHDYDPDCMKM------DELLYKVADDIKNFCVIYLVDITEVPDFNTMYELYDPVSVMFFYRNKHMMIDLGTGNNNKI 120 (160)
T ss_dssp EEECTTSHHHHHH------HHHHHHHHHHHTTTEEEEEEETTTCCTTTTTTTCCSSEEEEEEETTEEEEEECSSSCCSCB
T ss_pred EEECCCChhHHHH------HHHHHHHHHHccCCcEEEEEECCCCHHHHHHcCCCCCCEEEEEECCEEEEEecCCCCcCeE
Confidence 4777889999832 33555677778772 333443 4588999999876 45777764 68
Q ss_pred cCCCc--HHHHHHHHh
Q 046522 92 SEALP--EDLQNLCED 105 (115)
Q Consensus 92 ~g~lp--~~i~~~l~~ 105 (115)
.|-+| +++++.|+.
T Consensus 121 vGa~~~k~~l~~~ie~ 136 (160)
T 2av4_A 121 NWPMNNKQEFIDIVET 136 (160)
T ss_dssp CSCCCCHHHHHHHHHH
T ss_pred EeecCCHHHHHHHHHH
Confidence 89888 456665553
No 86
>2ph0_A Uncharacterized protein; Q6D2T7, ERWCT, NESG, EWR41, structural genomics, PSI-2, protein structure initiative; 1.85A {Pectobacterium carotovorum}
Probab=27.97 E-value=24 Score=25.77 Aligned_cols=37 Identities=5% Similarity=-0.145 Sum_probs=32.6
Q ss_pred hHHHHHHhcCC-----CCCeeeEEEecCCCcHHHHHHHHhcC
Q 046522 71 SWAARWLRIGR-----FVPGCYTLAVSEALPEDLQNLCEDER 107 (115)
Q Consensus 71 SwVAk~l~i~~-----~~pG~YAi~V~g~lp~~i~~~l~~~g 107 (115)
..+|+.++++. -.||-+|.+|.++-.++++++|++-|
T Consensus 18 ~dla~~l~vSe~e~~~a~~~~~a~~l~~~~~~~lL~~l~~~G 59 (174)
T 2ph0_A 18 EDIAGKYNTSLFAVVEALPTAQCTLATGDRFDQVWDTIATWG 59 (174)
T ss_dssp HHHHHHTTSCHHHHHHTSCTTTEEEEEGGGHHHHHHHHTTSC
T ss_pred HHHHHHcCCCHHHHHHhCCCCcEEEeChHhHHHHHHHhhhcC
Confidence 57889998876 57999999999988999999999887
No 87
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=27.78 E-value=19 Score=21.27 Aligned_cols=27 Identities=19% Similarity=0.465 Sum_probs=14.9
Q ss_pred ccccccccCcc--cccchhhccCCCCCCCC
Q 046522 14 HELRACLRCRL--VKTYDQFRESGCENCPF 41 (115)
Q Consensus 14 r~lrAC~~C~~--I~t~~qf~~~gCpnC~~ 41 (115)
+..+-|..|+- ++.. .+...-|+.|++
T Consensus 17 ~~~k~CP~CG~~~fm~~-~~~R~~C~kCG~ 45 (50)
T 3j20_Y 17 RKNKFCPRCGPGVFMAD-HGDRWACGKCGY 45 (50)
T ss_dssp CSSEECSSSCSSCEEEE-CSSEEECSSSCC
T ss_pred EecccCCCCCCceEEec-CCCeEECCCCCC
Confidence 34677777764 3322 223345887774
No 88
>2qgv_A Hydrogenase-1 operon protein HYAE; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Shigella flexneri 2A} PDB: 2hfd_A
Probab=27.20 E-value=31 Score=24.25 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=48.6
Q ss_pred hhccCC--CCCCCCCCCCCCcccccccCCCccceE---EEEeCCCh-hHHHHHHhcCC------CCCeeeEEEecCCCcH
Q 046522 30 QFRESG--CENCPFFKMDEDHERVVDCTTPNFNGI---ISVMDPTR-SWAARWLRIGR------FVPGCYTLAVSEALPE 97 (115)
Q Consensus 30 qf~~~g--CpnC~~l~m~~~~d~v~~~tT~~f~G~---I~i~dP~~-SwVAk~l~i~~------~~pG~YAi~V~g~lp~ 97 (115)
.|.... |+-|..+ .-+.+.....|.|- |+-+|.++ ..+|...+|.. |..|.+.=++.|-.|.
T Consensus 40 dF~a~~crCgpCk~i------aPvleela~e~~g~~v~~~KVdvDe~~~lA~~ygV~sIPTlilFk~G~~v~~~~G~~~k 113 (140)
T 2qgv_A 40 LLSSDPKRTPEVSDN------PVMIGELLHEFPDYTWQVAIADLEQSEAIGDRFGAFRFPATLVFTGGNYRGVLNGIHPW 113 (140)
T ss_dssp EECCCTTTCTTTTHH------HHHHHHHHTTCTTSCCEEEECCHHHHHHHHHHHTCCSSSEEEEEETTEEEEEEESCCCH
T ss_pred EEeCCcccCCcHHHH------HhHHHHHHHHcCCCeEEEEEEECCCCHHHHHHcCCccCCEEEEEECCEEEEEEecCCCH
Confidence 344444 8888722 23556678888874 44466654 67999999977 6789998899999995
Q ss_pred -HHHHHHHh
Q 046522 98 -DLQNLCED 105 (115)
Q Consensus 98 -~i~~~l~~ 105 (115)
++.+.|++
T Consensus 114 ~~l~~~i~~ 122 (140)
T 2qgv_A 114 AELINLMRG 122 (140)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 55566553
No 89
>1syr_A Thioredoxin; SGPP, structural genomics, PSI, protein structure initiative structural genomics of pathogenic protozoa consortium; 2.95A {Plasmodium falciparum} SCOP: c.47.1.1
Probab=26.94 E-value=9.4 Score=23.75 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=35.7
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceE-EEEeCCC-hhHHHHHHhcCCCCCe-------eeEEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGI-ISVMDPT-RSWAARWLRIGRFVPG-------CYTLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~-I~i~dP~-~SwVAk~l~i~~~~pG-------~YAi~V~g~lp~~i~ 100 (115)
.|...+||.|..+ ....+-....|.++ ++.+|-+ ..-+++.+++.. +|- ...-+..|.-++++.
T Consensus 32 ~f~a~~C~~C~~~------~~~l~~l~~~~~~v~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 104 (112)
T 1syr_A 32 DFFAEWCGPCKRI------APFYEECSKTYTKMVFIKVDVDEVSEVTEKENITS-MPTFKVYKNGSSVDTLLGANDSALK 104 (112)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEETTTTHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCHHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHcCCCEEEEEECCCCHHHHHHcCCCc-ccEEEEEECCcEEEEEeCCCHHHHH
Confidence 4666789999821 11111122233332 2223433 356888888865 564 333334565456666
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 105 ~~l~~ 109 (112)
T 1syr_A 105 QLIEK 109 (112)
T ss_dssp HHHHT
T ss_pred HHHHH
Confidence 66653
No 90
>3qt1_I DNA-directed RNA polymerases I, II, and III subun; transferase-transcription complex, RNA polymerase II, transc elongation; 4.30A {Saccharomyces cerevisiae}
Probab=26.94 E-value=41 Score=23.63 Aligned_cols=27 Identities=22% Similarity=0.634 Sum_probs=19.9
Q ss_pred ccccccccCcccccch--------hhccCCCCCCCCCC
Q 046522 14 HELRACLRCRLVKTYD--------QFRESGCENCPFFK 43 (115)
Q Consensus 14 r~lrAC~~C~~I~t~~--------qf~~~gCpnC~~l~ 43 (115)
..++-|..|+=++... .| .|++|++..
T Consensus 22 ~~~~FCPeCgNmL~pked~~~~~l~~---~CrtCgY~~ 56 (133)
T 3qt1_I 22 TTFRFCRDCNNMLYPREDKENNRLLF---ECRTCSYVE 56 (133)
T ss_dssp CCCCBCTTTCCBCBCCBCTTTCCBCC---BCSSSCCBC
T ss_pred cCCeeCCCCCCEeeECccCCCceeEE---ECCCCCCcE
Confidence 4679999999887554 24 499999643
No 91
>3kcm_A Thioredoxin family protein; SGX, thioredoxin protein, PSI, structural genomics, protein initiative; 2.45A {Geobacter metallireducens gs-15}
Probab=26.89 E-value=12 Score=24.10 Aligned_cols=41 Identities=12% Similarity=0.133 Sum_probs=23.3
Q ss_pred hHHHHHHhcCCCCCeeeEE--------EecCC---CcHHHHHHHHhcCCeecC
Q 046522 71 SWAARWLRIGRFVPGCYTL--------AVSEA---LPEDLQNLCEDERVQYVP 112 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi--------~V~g~---lp~~i~~~l~~~gi~y~p 112 (115)
+.+++.+++.. +|..|-| +..|. -++++.+.|+...-...+
T Consensus 96 ~~~~~~~~v~~-~P~~~lid~~G~i~~~~~g~~~~~~~~l~~~l~~l~~~~~~ 147 (154)
T 3kcm_A 96 KRVGKLYGTTG-VPETFVIDRHGVILKKVVGAMEWDHPEVIAFLNNELSKARE 147 (154)
T ss_dssp CHHHHHHTCCS-BCEEEEECTTSBEEEEEESCCCTTSHHHHHHHHTC------
T ss_pred hHHHHHhCCCC-CCeEEEECCCCcEEEEEcCCCccccHHHHHHHHHHHHHhhh
Confidence 44888888765 6766655 33443 366888888876444443
No 92
>1ksk_A Ribosomal small subunit pseudouridine synthase A; RSUA, lyase; 2.00A {Escherichia coli} SCOP: d.265.1.3 d.66.1.5 PDB: 1ksl_A 1ksv_A*
Probab=26.85 E-value=1.6e+02 Score=21.39 Aligned_cols=44 Identities=14% Similarity=0.333 Sum_probs=31.7
Q ss_pred ceEEEEeCCChhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHH
Q 046522 60 NGIISVMDPTRSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCE 104 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~ 104 (115)
+|++.+.+- ..+..+.+.-+..+.=.|-+.|.|.++++.++.+.
T Consensus 109 sGlll~ak~-~~~~~~l~~~~~~v~K~Y~a~v~g~~~~~~i~~~~ 152 (234)
T 1ksk_A 109 TGLVLMTDD-GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFA 152 (234)
T ss_dssp EEEEEEESC-HHHHHHHHCTTSCCCEEEEEEESSCCCTTHHHHHH
T ss_pred eeEEEEEcC-HHHHHHHhCCCCCCCeEEEEEEccCCCHHHHHHHH
Confidence 799999764 23344555434468899999999999988666654
No 93
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=25.69 E-value=39 Score=26.59 Aligned_cols=28 Identities=14% Similarity=0.336 Sum_probs=15.5
Q ss_pred cccccccCccc----ccchhhccCCCCCCC-CC
Q 046522 15 ELRACLRCRLV----KTYDQFRESGCENCP-FF 42 (115)
Q Consensus 15 ~lrAC~~C~~I----~t~~qf~~~gCpnC~-~l 42 (115)
....|..|+-- .....=-+--|.+|| ++
T Consensus 20 ~~~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~Vl 52 (345)
T 3k7a_M 20 IVLTCPECKVYPPKIVERFSEGDVVCALCGLVL 52 (345)
T ss_dssp CCCCCSTTCCSCCCCCCCSSSCSCCCSSSCCCC
T ss_pred CCCcCcCCCCCCCceEEECCCCCEecCCCCeEc
Confidence 34579999652 221110013599999 55
No 94
>2vm1_A Thioredoxin, thioredoxin H isoform 1.; oxidoreductase, protein disulfide reductase, thioredoxin-FOL; 1.7A {Hordeum vulgare var} PDB: 2vm2_A
Probab=25.50 E-value=20 Score=21.95 Aligned_cols=69 Identities=19% Similarity=0.215 Sum_probs=37.3
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEE-EEeCCC-hhHHHHHHhcCCCCCeeeE-------EEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGII-SVMDPT-RSWAARWLRIGRFVPGCYT-------LAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I-~i~dP~-~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....|.++. ..+|-+ ...+++.+++.. +|-.+- -++.|.-++++.
T Consensus 34 ~f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~l~ 106 (118)
T 2vm1_A 34 DFTASWCGPCRVI------APVFAEYAKKFPGAIFLKVDVDELKDVAEAYNVEA-MPTFLFIKDGEKVDSVVGGRKDDIH 106 (118)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEETTTSHHHHHHTTCCS-BSEEEEEETTEEEEEEESCCHHHHH
T ss_pred EEECCCCHhHHHH------hHHHHHHHHHCCCcEEEEEEcccCHHHHHHcCCCc-CcEEEEEeCCeEEEEecCCCHHHHH
Confidence 3666789999721 111111223333332 223443 467899999875 564333 345565567777
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 107 ~~l~~ 111 (118)
T 2vm1_A 107 TKIVA 111 (118)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 95
>1xou_A ESPA; coiled coil, helix bundle, heterodimer, structural protein/chaperone complex; 2.80A {Escherichia coli} SCOP: a.231.1.1
Probab=25.45 E-value=15 Score=27.98 Aligned_cols=20 Identities=15% Similarity=0.423 Sum_probs=0.0
Q ss_pred ecCCCcHHHHHHHHh--cCCee
Q 046522 91 VSEALPEDLQNLCED--ERVQY 110 (115)
Q Consensus 91 V~g~lp~~i~~~l~~--~gi~y 110 (115)
..+.||+|+++.+.+ +||..
T Consensus 99 ak~~LP~dVI~Ymrd~~NgItV 120 (192)
T 1xou_A 99 AKAQLPDEVISYINDPRNDITI 120 (192)
T ss_dssp ----------------------
T ss_pred ccccCCHHHHHHHHccCCCeee
Confidence 578999999999999 89864
No 96
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=25.10 E-value=38 Score=20.34 Aligned_cols=29 Identities=21% Similarity=0.449 Sum_probs=15.8
Q ss_pred ccccccccCccccc-chhhccCCCCCCCCC
Q 046522 14 HELRACLRCRLVKT-YDQFRESGCENCPFF 42 (115)
Q Consensus 14 r~lrAC~~C~~I~t-~~qf~~~gCpnC~~l 42 (115)
+..+-|..|+-.+- ...|..--|..|++.
T Consensus 16 ~~~~fCPkCG~~~~ma~~~dr~~C~kCgyt 45 (55)
T 2k4x_A 16 RKHRFCPRCGPGVFLAEHADRYSCGRCGYT 45 (55)
T ss_dssp CSSCCCTTTTTTCCCEECSSEEECTTTCCC
T ss_pred EccccCcCCCCceeEeccCCEEECCCCCCE
Confidence 34677888875322 122223348888744
No 97
>2vim_A Thioredoxin, TRX; thioredoxin fold, oxidoreductase; 1.38A {Fasciola hepatica}
Probab=24.34 E-value=21 Score=21.19 Aligned_cols=68 Identities=16% Similarity=0.155 Sum_probs=35.8
Q ss_pred hccCCCCCCCCCCCCCCcccccccCCCccceE-EEEeCCC-hhHHHHHHhcCCCCCeeeE-------EEecCCCcHHHHH
Q 046522 31 FRESGCENCPFFKMDEDHERVVDCTTPNFNGI-ISVMDPT-RSWAARWLRIGRFVPGCYT-------LAVSEALPEDLQN 101 (115)
Q Consensus 31 f~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~-I~i~dP~-~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~i~~ 101 (115)
|...+||.|... ....+-....+.++ +..++.+ ...+++.+++.. +|-.+- -+..|.-++++.+
T Consensus 26 f~~~~C~~C~~~------~~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~G~~~~~l~~ 98 (104)
T 2vim_A 26 FFAQWCGPCRNI------APKVEALAKEIPEVEFAKVDVDQNEEAAAKYSVTA-MPTFVFIKDGKEVDRFSGANETKLRE 98 (104)
T ss_dssp EECTTCHHHHHH------HHHHHHHHHHCTTSEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESSCHHHHHH
T ss_pred EECCCCHHHHHh------hHHHHHHHHHCCCCEEEEEeccCCHHHHHHcCCcc-ccEEEEEeCCcEEEEEeCCCHHHHHH
Confidence 566789999721 11111122233332 2334544 467899999875 564333 3345644566666
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 99 ~l~~ 102 (104)
T 2vim_A 99 TITR 102 (104)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 6653
No 98
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=24.31 E-value=65 Score=23.37 Aligned_cols=27 Identities=19% Similarity=0.399 Sum_probs=18.9
Q ss_pred hhHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhcCCe
Q 046522 70 RSWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERVQ 109 (115)
Q Consensus 70 ~SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~gi~ 109 (115)
.|||++.+++- .||+++++.+.+..|.
T Consensus 66 ~s~V~~~LrLl-------------~Lp~~v~~~v~~g~is 92 (178)
T 1r71_A 66 PAFITQHVTLL-------------DLPEKIADAFNTGRVR 92 (178)
T ss_dssp HHHHHHHHGGG-------------SCCHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHH-------------cCCHHHHHHHHcCCCC
Confidence 45666666544 5899999988877664
No 99
>3q6o_A Sulfhydryl oxidase 1; protein disulfide isomerase, thioredoxin, thioredoxin fold, oxidoreductase, reductive methylation; HET: MLY; 2.05A {Homo sapiens}
Probab=24.09 E-value=20 Score=25.74 Aligned_cols=69 Identities=22% Similarity=0.269 Sum_probs=39.8
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce-----EEEEeC---CChhHHHHHHhcCCCCCeeeEEE-----------
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG-----IISVMD---PTRSWAARWLRIGRFVPGCYTLA----------- 90 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G-----~I~i~d---P~~SwVAk~l~i~~~~pG~YAi~----------- 90 (115)
.|+...|+.|..+ .. ..+-....+.| .++-+| .+...+++.++|.. +|-.+.+.
T Consensus 36 ~F~a~wC~~C~~~--~p----~~~~l~~~~~~~~~~v~~~~vd~~~~~~~~l~~~~~v~~-~Pt~~~~~~g~~~~~g~~~ 108 (244)
T 3q6o_A 36 EFFASWCGHCIAF--AP----TWXALAEDVKAWRPALYLAALDCAEETNSAVCRDFNIPG-FPTVRFFXAFTXNGSGAVF 108 (244)
T ss_dssp EEECTTCHHHHHH--HH----HHHHHHHHTGGGTTTEEEEEEETTSTTTHHHHHHTTCCS-SSEEEEECTTCCSSSCEEC
T ss_pred EEECCcCHHHHHH--HH----HHHHHHHHHHhccCcEEEEEEeCCchhhHHHHHHcCCCc-cCEEEEEeCCCcCCCCeeE
Confidence 5777889999821 11 11223334443 222344 56789999999875 67666665
Q ss_pred -ecCCCcHHHHHHHHh
Q 046522 91 -VSEALPEDLQNLCED 105 (115)
Q Consensus 91 -V~g~lp~~i~~~l~~ 105 (115)
+.|.-++++.+.|++
T Consensus 109 ~~~g~~~~~l~~~i~~ 124 (244)
T 3q6o_A 109 PVAGADVQTLRERLID 124 (244)
T ss_dssp CCTTCCHHHHHHHHHH
T ss_pred ecCCCCHHHHHHHHHH
Confidence 344446666655544
No 100
>2bru_C NAD(P) transhydrogenase subunit beta; paramagnetic transhydrogenase, inner membrane, membrane, oxidoreductase, transmembrane; HET: NAD NAP; NMR {Escherichia coli}
Probab=23.92 E-value=35 Score=25.81 Aligned_cols=40 Identities=23% Similarity=0.295 Sum_probs=32.3
Q ss_pred hHHHHHHhcCCCCCeeeEEE-ecCCCcHHHHHHHHhcCCeec
Q 046522 71 SWAARWLRIGRFVPGCYTLA-VSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~-V~g~lp~~i~~~l~~~gi~y~ 111 (115)
..+++.|+- +-+.=+|||- |-|++|-..--.|.+.+++|-
T Consensus 51 ~el~~~L~~-~G~~V~faIHPVAGRMPGhMNVLLAEA~VPYd 91 (186)
T 2bru_C 51 AEITEKLRA-RGINVRFGIHPVAGRLPGHMNVLLAEAKVPYD 91 (186)
T ss_dssp HHHHHHHHH-HCCEEEEEECSSSSSSSSTHHHHHHHHTCCTT
T ss_pred HHHHHHHHH-CCCeEEEEeccccccCCCcceEEEEecCCCHH
Confidence 456666653 2367789999 999999999999999999984
No 101
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=23.84 E-value=38 Score=19.25 Aligned_cols=25 Identities=20% Similarity=0.569 Sum_probs=14.6
Q ss_pred cccccccCcc---cccchhhccCCCCCCC
Q 046522 15 ELRACLRCRL---VKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~---I~t~~qf~~~gCpnC~ 40 (115)
...+|..|+- +...+. .+-.|++|+
T Consensus 4 ~~~~CP~C~~~~l~~d~~~-gelvC~~CG 31 (50)
T 1pft_A 4 KQKVCPACESAELIYDPER-GEIVCAKCG 31 (50)
T ss_dssp SCCSCTTTSCCCEEEETTT-TEEEESSSC
T ss_pred ccEeCcCCCCcceEEcCCC-CeEECcccC
Confidence 3568999954 332221 012599999
No 102
>3g9k_S Capsule biosynthesis protein CAPD; CAPD protein, the great lakes regional C excellence, GLRCE, capsule biogenesis/degradation; HET: GLU; 1.79A {Bacillus anthracis} PDB: 3ga9_S*
Probab=23.76 E-value=62 Score=23.46 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.5
Q ss_pred EEEecCCCcHHHHHHHHhcCCeec
Q 046522 88 TLAVSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 88 Ai~V~g~lp~~i~~~l~~~gi~y~ 111 (115)
.+.++..+|++++++|+.+|-...
T Consensus 115 ~~~~E~~~~~~~~~~L~~~Gh~v~ 138 (177)
T 3g9k_S 115 TAYTEIQLSSEVKNELSRKGLNVK 138 (177)
T ss_dssp EEEESSCCCHHHHHHHHTTTCEEE
T ss_pred eEEEcCCCCHHHHHHHHHcCCeeE
Confidence 477899999999999999986654
No 103
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=23.75 E-value=26 Score=26.60 Aligned_cols=22 Identities=27% Similarity=0.696 Sum_probs=17.2
Q ss_pred cccccccCcccccchhhccCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
...-|..|+-|.+..+ .|++|+
T Consensus 179 ~i~~C~iC~~iv~~g~----~C~~C~ 200 (238)
T 3nw0_A 179 AVKICNICHSLLIQGQ----SCETCG 200 (238)
T ss_dssp TCCBCTTTCSBCSSCE----ECSSSC
T ss_pred CCCcCcchhhHHhCCc----ccCccC
Confidence 3677999999998654 488887
No 104
>3p2a_A Thioredoxin 2, putative thioredoxin-like protein; structural genomics, center for structural genomics of infec diseases, csgid; 2.19A {Yersinia pestis}
Probab=23.14 E-value=31 Score=22.42 Aligned_cols=71 Identities=15% Similarity=0.240 Sum_probs=36.4
Q ss_pred hccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeE-------EEecCCCc-HHHHHH
Q 046522 31 FRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYT-------LAVSEALP-EDLQNL 102 (115)
Q Consensus 31 f~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp-~~i~~~ 102 (115)
|....|+.|... ...-+++.+-...+ --++.|--.+...+++.++|.. +|-.+- -+..|.++ +++.+.
T Consensus 62 F~a~wC~~C~~~--~p~l~~~~~~~~~~-~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~~ 137 (148)
T 3p2a_A 62 FWAPWCGPCRSF--APIFAETAAERAGK-VRFVKVNTEAEPALSTRFRIRS-IPTIMLYRNGKMIDMLNGAVPKAPFDNW 137 (148)
T ss_dssp EECSSCHHHHHH--HHHHHHHHHHTTTT-CEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEESSCCCHHHHHHH
T ss_pred EECCCCHHHHHH--HHHHHHHHHHcCCc-eEEEEEECcCCHHHHHHCCCCc-cCEEEEEECCeEEEEEeCCCCHHHHHHH
Confidence 566789999721 11111222222122 1233443345578899999876 554433 34566666 445555
Q ss_pred HHh
Q 046522 103 CED 105 (115)
Q Consensus 103 l~~ 105 (115)
|++
T Consensus 138 l~~ 140 (148)
T 3p2a_A 138 LDE 140 (148)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 105
>1xfl_A Thioredoxin H1; AT3G51030, structural genomics, protein structure initiative, CESG, center for eukaryotic structural genomics; NMR {Arabidopsis thaliana} SCOP: c.47.1.1
Probab=23.13 E-value=23 Score=22.71 Aligned_cols=69 Identities=19% Similarity=0.238 Sum_probs=38.4
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEE-eCCC-hhHHHHHHhcCCCCCeee-------EEEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISV-MDPT-RSWAARWLRIGRFVPGCY-------TLAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i-~dP~-~SwVAk~l~i~~~~pG~Y-------Ai~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....|.++..+ +|-+ ...+++.+++.. +|-.+ .-+..|.-++++.
T Consensus 44 ~f~a~wC~~C~~~------~~~l~~l~~~~~~v~~~~vd~d~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~l~ 116 (124)
T 1xfl_A 44 DFTASWCGPCRFI------APFFADLAKKLPNVLFLKVDTDELKSVASDWAIQA-MPTFMFLKEGKILDKVVGAKKDELQ 116 (124)
T ss_dssp EEECTTCHHHHHH------HHHHHHHHHHCSSEEEEEEETTTSHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCHHHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHHCCCcEEEEEECccCHHHHHHcCCCc-cCEEEEEECCEEEEEEeCCCHHHHH
Confidence 3666789999821 11112233334443322 3443 467899999875 56433 3345565567777
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 117 ~~l~~ 121 (124)
T 1xfl_A 117 STIAK 121 (124)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77764
No 106
>1nj3_A NPL4; NZF domain, rubredoxin knuckle, beta-ribbon, zinc- finger, ubiquitin, protein binding; NMR {Rattus norvegicus} SCOP: g.41.11.1 PDB: 1q5w_A
Probab=23.11 E-value=33 Score=17.83 Aligned_cols=22 Identities=27% Similarity=0.767 Sum_probs=16.7
Q ss_pred ccccccCcccccchhhccCCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRESGCENCP 40 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~~gCpnC~ 40 (115)
.-+|..|.++..... ..|..|+
T Consensus 6 ~W~C~~CTf~N~~~~---~~Ce~C~ 27 (31)
T 1nj3_A 6 MWACQHCTFMNQPGT---GHCEMCS 27 (31)
T ss_dssp CEECSSSCCEECSSC---SSCSSSC
T ss_pred cccCCcccccCCCCC---CccCCcC
Confidence 467899999887664 4588886
No 107
>1nsw_A Thioredoxin, TRX; thermostability, electron transport; 1.90A {Alicyclobacillus acidocaldarius} SCOP: c.47.1.1 PDB: 1rqm_A 1quw_A 1nw2_A
Probab=22.88 E-value=24 Score=21.17 Aligned_cols=71 Identities=11% Similarity=0.179 Sum_probs=36.1
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeEE-------EecCCCcH-HHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTL-------AVSEALPE-DLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp~-~i~~ 101 (115)
.|....||.|... ...-+.+.+-...++ -++.+--.+...+++.+++.. +|-.+-+ +..|..+. ++.+
T Consensus 23 ~f~~~~C~~C~~~--~~~l~~~~~~~~~~v-~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~ 98 (105)
T 1nsw_A 23 DFWAAWCGPCRMM--APVLEEFAEAHADKV-TVAKLNVDENPETTSQFGIMS-IPTLILFKGGRPVKQLIGYQPKEQLEA 98 (105)
T ss_dssp EEECTTCHHHHHH--HHHHHHHHHHSTTTC-EEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred EEECCCCHHHHHH--HHHHHHHHHHhcCCc-EEEEEECcCCHHHHHHcCCcc-ccEEEEEeCCeEEEEEecCCCHHHHHH
Confidence 3666789999721 011112222122221 233332334567899999875 5655443 35566664 4555
Q ss_pred HHH
Q 046522 102 LCE 104 (115)
Q Consensus 102 ~l~ 104 (115)
.|+
T Consensus 99 ~l~ 101 (105)
T 1nsw_A 99 QLA 101 (105)
T ss_dssp HTT
T ss_pred HHH
Confidence 554
No 108
>2kum_A C-C motif chemokine 27; CCL27, ctack, cytokine, disulfide bond, polymorph signaling protein; NMR {Homo sapiens}
Probab=22.82 E-value=38 Score=22.34 Aligned_cols=21 Identities=14% Similarity=0.433 Sum_probs=16.1
Q ss_pred CCCccceEEEEeCCChhHHHHHHh
Q 046522 55 TTPNFNGIISVMDPTRSWAARWLR 78 (115)
Q Consensus 55 tT~~f~G~I~i~dP~~SwVAk~l~ 78 (115)
+|.. +.|.. ||++.||-++++
T Consensus 46 ~tk~--r~vCA-dP~~~WVq~~mk 66 (88)
T 2kum_A 46 HLAQ--RSICI-HPQNPSLSQWFE 66 (88)
T ss_dssp EETT--EEEEE-CSSCHHHHHHHH
T ss_pred EECC--CeEeC-CCchHHHHHHHH
Confidence 4553 55665 999999999986
No 109
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=22.77 E-value=67 Score=23.19 Aligned_cols=68 Identities=18% Similarity=0.420 Sum_probs=38.9
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccce--EEEEeCC-ChhHHHHHHhcCCCCCeeeEE-------EecCCCcH-H
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNG--IISVMDP-TRSWAARWLRIGRFVPGCYTL-------AVSEALPE-D 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G--~I~i~dP-~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp~-~ 98 (115)
.|....|+-|..+ ..+.+-....+.| .++-+|- +...+++..+|.. +|-.+-+ +..|..+. .
T Consensus 32 ~f~a~wC~~C~~~------~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~~ 104 (287)
T 3qou_A 32 YFWSERSQHCLQL------TPILESLAAQYNGQFILAKLDCDAEQMIAAQFGLRA-IPTVYLFQNGQPVDGFQGPQPEEA 104 (287)
T ss_dssp EEECTTCTTTTTT------HHHHHHHHHHHTSSSEEEEEETTTCHHHHHTTTCCS-SSEEEEEETTEEEEEEESCCCHHH
T ss_pred EEECCCChHHHHH------HHHHHHHHHHcCCCeEEEEEeCccCHHHHHHcCCCC-CCeEEEEECCEEEEEeeCCCCHHH
Confidence 4777889999832 1122233445554 2333443 4478999999875 5654443 45566665 4
Q ss_pred HHHHHH
Q 046522 99 LQNLCE 104 (115)
Q Consensus 99 i~~~l~ 104 (115)
+.+.|.
T Consensus 105 l~~~l~ 110 (287)
T 3qou_A 105 IRALLD 110 (287)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 555554
No 110
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=22.72 E-value=22 Score=24.92 Aligned_cols=23 Identities=26% Similarity=0.517 Sum_probs=17.1
Q ss_pred ccccccCcccccchhhccCCCCCCCC
Q 046522 16 LRACLRCRLVKTYDQFRESGCENCPF 41 (115)
Q Consensus 16 lrAC~~C~~I~t~~qf~~~gCpnC~~ 41 (115)
..-|..|+.+.-.-+ .-||.|+.
T Consensus 47 ~~rC~~CG~~~~PPr---~~Cp~C~s 69 (145)
T 3irb_A 47 GSKCSKCGRIFVPAR---SYCEHCFV 69 (145)
T ss_dssp EEECTTTCCEEESCC---SEETTTTE
T ss_pred EEEeCCCCcEEcCch---hhCcCCCC
Confidence 467999998875544 35999983
No 111
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.25A {Aeropyrum pernix}
Probab=22.11 E-value=16 Score=23.85 Aligned_cols=37 Identities=16% Similarity=0.066 Sum_probs=24.6
Q ss_pred ChhHHHHHHhcCCCCC-------eeeEEEecCCCcHHHHHHHHhc
Q 046522 69 TRSWAARWLRIGRFVP-------GCYTLAVSEALPEDLQNLCEDE 106 (115)
Q Consensus 69 ~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp~~i~~~l~~~ 106 (115)
+...+++.++|.. +| |.-.-++.|..+++....+-++
T Consensus 80 ~~~~l~~~~~v~~-~Pt~~~~~~G~~v~~~~G~~~~~~~~~~i~~ 123 (135)
T 3emx_A 80 AARLEMNKAGVEG-TPTLVFYKEGRIVDKLVGATPWSLKVEKARE 123 (135)
T ss_dssp HHHHHHHHHTCCS-SSEEEEEETTEEEEEEESCCCHHHHHHHHHH
T ss_pred hhHHHHHHcCCce-eCeEEEEcCCEEEEEEeCCCCHHHHHHHHHH
Confidence 4577888999876 55 3333456677787777665543
No 112
>2l57_A Uncharacterized protein; structural genomics, unknown function, thioredoxin-like, PSI protein structure initiative; NMR {Clostridium perfringens}
Probab=21.56 E-value=23 Score=22.26 Aligned_cols=78 Identities=13% Similarity=0.134 Sum_probs=40.5
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEe--CCChhHHHHHHhcCCCCCeeeE--------EEecCCCc-HH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVM--DPTRSWAARWLRIGRFVPGCYT--------LAVSEALP-ED 98 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~--dP~~SwVAk~l~i~~~~pG~YA--------i~V~g~lp-~~ 98 (115)
.|....||.|... ...-+++.+-...++ -++.|- -.+...+++.+++.. +|-.+- -+..|..+ ++
T Consensus 32 ~f~a~wC~~C~~~--~~~l~~~~~~~~~~v-~~~~v~~~~d~~~~~~~~~~v~~-~Pt~~~~~~~G~~~~~~~G~~~~~~ 107 (126)
T 2l57_A 32 MFKTDTCPYCVEM--QKELSYVSKEREGKF-NIYYARLEEEKNIDLAYKYDANI-VPTTVFLDKEGNKFYVHQGLMRKNN 107 (126)
T ss_dssp EEECSSCHHHHHH--HHHHHHHHHHSSSSC-EEEEEETTSSHHHHHHHHTTCCS-SSEEEEECTTCCEEEEEESCCCHHH
T ss_pred EEECCCCccHHHH--HHHHHHHHHHhcCCe-EEEEEeCCCCchHHHHHHcCCcc-eeEEEEECCCCCEEEEecCCCCHHH
Confidence 4667789999721 011112222111121 123332 233577999999875 554443 34567665 56
Q ss_pred HHHHHHhcCCeec
Q 046522 99 LQNLCEDERVQYV 111 (115)
Q Consensus 99 i~~~l~~~gi~y~ 111 (115)
+.+.|+...-.-.
T Consensus 108 l~~~l~~~~~~~~ 120 (126)
T 2l57_A 108 IETILNSLGVKEG 120 (126)
T ss_dssp HHHHHHHHCCCCC
T ss_pred HHHHHHHHhcccc
Confidence 7777776644433
No 113
>3j21_g 50S ribosomal protein L40E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=21.52 E-value=55 Score=19.62 Aligned_cols=25 Identities=24% Similarity=0.741 Sum_probs=19.2
Q ss_pred cccccccCcccccchhhccCCCCCCCCC
Q 046522 15 ELRACLRCRLVKTYDQFRESGCENCPFF 42 (115)
Q Consensus 15 ~lrAC~~C~~I~t~~qf~~~gCpnC~~l 42 (115)
.-.-|..|+......-|. |..|++.
T Consensus 13 ~k~iCpkC~a~~~~gaw~---CrKCG~~ 37 (51)
T 3j21_g 13 KKYVCLRCGATNPWGAKK---CRKCGYK 37 (51)
T ss_dssp SEEECTTTCCEECTTCSS---CSSSSSC
T ss_pred CCccCCCCCCcCCCCcee---cCCCCCc
Confidence 457799999988777664 9999843
No 114
>2gjf_A Designed protein; procarboxypeptidase, de novo protein; NMR {}
Probab=21.45 E-value=61 Score=19.67 Aligned_cols=28 Identities=11% Similarity=0.321 Sum_probs=22.8
Q ss_pred Cee-eEEEecCCCcHHHHHHHHhcCCeec
Q 046522 84 PGC-YTLAVSEALPEDLQNLCEDERVQYV 111 (115)
Q Consensus 84 pG~-YAi~V~g~lp~~i~~~l~~~gi~y~ 111 (115)
+|. .-|.|.-..=+++.+.|++.||.|.
T Consensus 45 ~~~~vdI~V~p~~~~~f~~~L~~~~I~y~ 73 (78)
T 2gjf_A 45 PGQPVVILIPSDMVEWFLEMLKAKGIPFT 73 (78)
T ss_dssp TTCCEEEEECTTSHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEEECHHHHHHHHHHHHHCCCcEE
Confidence 443 5577888888899999999999995
No 115
>1v98_A Thioredoxin; oxidoreductase, structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.82A {Thermus thermophilus}
Probab=21.43 E-value=31 Score=22.21 Aligned_cols=68 Identities=16% Similarity=0.213 Sum_probs=35.2
Q ss_pred hccCCCCCCCCCCCCCCcccccccCCCccce---EEEEeCCChhHHHHHHhcCCCCCeeeE-------EEecCCCc-HHH
Q 046522 31 FRESGCENCPFFKMDEDHERVVDCTTPNFNG---IISVMDPTRSWAARWLRIGRFVPGCYT-------LAVSEALP-EDL 99 (115)
Q Consensus 31 f~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G---~I~i~dP~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp-~~i 99 (115)
|...+||.|..+ ....+-....|.| ++.|--.+...+++.+++.. +|-.+- -+..|..+ +++
T Consensus 57 f~~~~C~~C~~~------~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l 129 (140)
T 1v98_A 57 FFAPWCGPCRLV------SPILEELARDHAGRLKVVKVNVDEHPGLAARYGVRS-VPTLVLFRRGAPVATWVGASPRRVL 129 (140)
T ss_dssp EECTTCHHHHHH------HHHHHHHHHHTTTTEEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHHH
T ss_pred EECCCCHHHHHH------HHHHHHHHHHccCceEEEEEECCCCHHHHHHCCCCc-cCEEEEEeCCcEEEEEeCCCCHHHH
Confidence 445689999721 1111112233332 33333334568999999865 565443 23456554 556
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 130 ~~~i~~ 135 (140)
T 1v98_A 130 EERLRP 135 (140)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 665553
No 116
>1ogy_B Diheme cytochrome C NAPB molecule: nitrate reductase; oxidoreductase; HET: MGD HEC; 3.2A {Rhodobacter sphaeroides} SCOP: a.138.1.3
Probab=21.30 E-value=51 Score=23.50 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=17.3
Q ss_pred CCCCCCCCCCC-----ccccccccCccc
Q 046522 3 SAPAQIPTSFG-----HELRACLRCRLV 25 (115)
Q Consensus 3 ~~~~~~p~~~~-----r~lrAC~~C~~I 25 (115)
.++++||.+.. ++.-.|+.||.-
T Consensus 37 ~qPPlIPH~i~gy~It~~~N~ClsCH~~ 64 (130)
T 1ogy_B 37 EQPPVIPHSIEGYQLSVNANRCLECHRR 64 (130)
T ss_dssp TSCCCBCSCCTTCCBSSSCBGGGGTSCC
T ss_pred CCCCCCCccccCceecCCCCcCcccCCc
Confidence 57888998742 356899999963
No 117
>2yzu_A Thioredoxin; redox protein, electron transport, structural genomics; 1.90A {Thermus thermophilus} PDB: 2cvk_A
Probab=21.24 E-value=28 Score=20.63 Aligned_cols=72 Identities=15% Similarity=0.195 Sum_probs=37.0
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeEE-------EecCCCc-HHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYTL-------AVSEALP-EDLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YAi-------~V~g~lp-~~i~~ 101 (115)
.|....||.|... ...-+++.+-...++ -++.|--.+...+++.+++.. +|-.+-+ +..|..+ +++.+
T Consensus 24 ~f~~~~C~~C~~~--~~~l~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~~l~~ 99 (109)
T 2yzu_A 24 DFWAEWCAPCRMI--APILEEIAKEYEGKL-LVAKLDVDENPKTAMRYRVMS-IPTVILFKDGQPVEVLVGAQPKRNYQA 99 (109)
T ss_dssp EEECTTCHHHHHH--HHHHHHHHHHTBTTB-EEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred EEECCCCHHHHHh--hHHHHHHHHHhhCce-EEEEEECCCCHhHHHhCCCCc-CCEEEEEeCCcEeeeEeCCCCHHHHHH
Confidence 3566789999821 011112222122121 123332244567999999875 6655443 3456664 56666
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 100 ~l~~ 103 (109)
T 2yzu_A 100 KIEK 103 (109)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 6664
No 118
>1t00_A Thioredoxin, TRX; redox regulation, multifunction macromolecule, electron transport; 1.51A {Streptomyces coelicolor}
Probab=21.22 E-value=29 Score=21.06 Aligned_cols=72 Identities=15% Similarity=0.166 Sum_probs=36.0
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeee-------EEEecCCCc-HHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCY-------TLAVSEALP-EDLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~Y-------Ai~V~g~lp-~~i~~ 101 (115)
.|....||.|... ...-+++.+-...++ -++.+--.+...+++.+++.. +|-.+ .-+..|..+ +++.+
T Consensus 29 ~f~~~~C~~C~~~--~~~l~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~G~~~~~~l~~ 104 (112)
T 1t00_A 29 DFWAAWCGPCRQI--APSLEAIAAEYGDKI-EIVKLNIDENPGTAAKYGVMS-IPTLNVYQGGEVAKTIVGAKPKAAIVR 104 (112)
T ss_dssp EEECTTCHHHHHH--HHHHHHHHHHTTTTC-EEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred EEECCCCHhHHhc--CHHHHHHHHHhcCCe-EEEEEEcCCCHHHHHhCCCCc-ccEEEEEeCCEEEEEEeCCCCHHHHHH
Confidence 4566789999711 001111221111221 233332234577999999875 56433 233566665 55666
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 105 ~l~~ 108 (112)
T 1t00_A 105 DLED 108 (112)
T ss_dssp HTHH
T ss_pred HHHH
Confidence 6553
No 119
>1ha6_A Macrophage inflammatory protein 3 alpha; immune system, chemiokine, mouse, CCL20/MIP-3A, defensins; NMR {Mus musculus} SCOP: d.9.1.1
Probab=21.03 E-value=46 Score=20.32 Aligned_cols=18 Identities=22% Similarity=0.610 Sum_probs=13.9
Q ss_pred ceE-EEEeCCChhHHHHHHh
Q 046522 60 NGI-ISVMDPTRSWAARWLR 78 (115)
Q Consensus 60 ~G~-I~i~dP~~SwVAk~l~ 78 (115)
.|- |.+ ||+..||-+++.
T Consensus 43 ~g~~vC~-dP~~~WVq~~i~ 61 (70)
T 1ha6_A 43 KRKSVCA-DPKQNWVKRAVN 61 (70)
T ss_dssp SSSSEEE-CTTSHHHHHHHH
T ss_pred CCCEEeC-CCChHHHHHHHH
Confidence 454 554 999999999874
No 120
>1nd9_A Translation initiation factor IF-2; NMR {Escherichia coli} SCOP: a.6.1.6
Probab=20.82 E-value=66 Score=17.45 Aligned_cols=23 Identities=17% Similarity=0.019 Sum_probs=18.1
Q ss_pred hHHHHHHhcCCCCCeeeEEEecCCCcHHHHHHHHhcCC
Q 046522 71 SWAARWLRIGRFVPGCYTLAVSEALPEDLQNLCEDERV 108 (115)
Q Consensus 71 SwVAk~l~i~~~~pG~YAi~V~g~lp~~i~~~l~~~gi 108 (115)
..+|+.++++ +.++++.|.+.||
T Consensus 6 ~~lAkel~~~---------------~k~l~~~l~~~g~ 28 (49)
T 1nd9_A 6 KTLAAERQTS---------------VERLVQQFADAGI 28 (49)
T ss_dssp THHHHHHSSS---------------HHHHHHHHHHHTS
T ss_pred HHHHHHHCcC---------------HHHHHHHHHHcCC
Confidence 4577777665 5789999999998
No 121
>1ti3_A Thioredoxin H, PTTRXH1; oxidoreductase; NMR {Populus tremula} SCOP: c.47.1.1
Probab=20.71 E-value=28 Score=21.07 Aligned_cols=69 Identities=16% Similarity=0.206 Sum_probs=37.4
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEE-eCCC-hhHHHHHHhcCCCCCeeeE-------EEecCCCcHHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISV-MDPT-RSWAARWLRIGRFVPGCYT-------LAVSEALPEDLQ 100 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i-~dP~-~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~~i~ 100 (115)
.|....||.|... ....+-....|.++..+ +|-+ ...+++.+++.. +|-.+- -+..|.-++++.
T Consensus 32 ~f~~~~C~~C~~~------~~~l~~~~~~~~~v~~~~v~~~~~~~~~~~~~v~~-~Pt~~~~~~G~~~~~~~g~~~~~l~ 104 (113)
T 1ti3_A 32 DFTASWCPPCKMI------APIFAELAKKFPNVTFLKVDVDELKAVAEEWNVEA-MPTFIFLKDGKLVDKTVGADKDGLP 104 (113)
T ss_dssp EEECSSCHHHHHH------HHHHHHHHHHCSSEEEEEEETTTCHHHHHHHHCSS-TTEEEEEETTEEEEEEECCCTTHHH
T ss_pred EEECCCCHHHHHH------HHHHHHHHHhCCCcEEEEEEccccHHHHHhCCCCc-ccEEEEEeCCEEEEEEecCCHHHHH
Confidence 3566789999721 11111123334343322 3433 467899999875 664433 234555567777
Q ss_pred HHHHh
Q 046522 101 NLCED 105 (115)
Q Consensus 101 ~~l~~ 105 (115)
+.|++
T Consensus 105 ~~l~~ 109 (113)
T 1ti3_A 105 TLVAK 109 (113)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77664
No 122
>3uvt_A Thioredoxin domain-containing protein 5; thioredoxin-like fold, isomerase; 2.00A {Homo sapiens} PDB: 2diz_A 3uj1_A
Probab=20.65 E-value=47 Score=19.82 Aligned_cols=73 Identities=15% Similarity=0.230 Sum_probs=36.2
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEE-EeC-CChhHHHHHHhcCCCCC-------eeeEEEecCCCc-HHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIIS-VMD-PTRSWAARWLRIGRFVP-------GCYTLAVSEALP-EDL 99 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~-i~d-P~~SwVAk~l~i~~~~p-------G~YAi~V~g~lp-~~i 99 (115)
.|....||.|... ...-+.+.+-...+..++.. .+| .+...+++.+++.. +| |....+..|..+ +++
T Consensus 27 ~f~~~~C~~C~~~--~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~v~~-~Pt~~~~~~g~~~~~~~g~~~~~~l 103 (111)
T 3uvt_A 27 KFYAPWCGHCKTL--APTWEELSKKEFPGLAGVKIAEVDCTAERNICSKYSVRG-YPTLLLFRGGKKVSEHSGGRDLDSL 103 (111)
T ss_dssp EEECSSCHHHHHH--HHHHHHHHTCCCCC-CCEEEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEECSCCSHHHH
T ss_pred EEECCCChhHHHh--hHHHHHHHHHhhccCCceEEEEEeccccHhHHHhcCCCc-ccEEEEEeCCcEEEeccCCcCHHHH
Confidence 4667889999821 01111111111111123222 234 34467899999876 45 444445666654 455
Q ss_pred HHHHHh
Q 046522 100 QNLCED 105 (115)
Q Consensus 100 ~~~l~~ 105 (115)
.+.|++
T Consensus 104 ~~~l~~ 109 (111)
T 3uvt_A 104 HRFVLS 109 (111)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555543
No 123
>1m8a_A Small inducible cytokine A20; CC-chemokine, IL-8 type dimer; 1.70A {Synthetic} SCOP: d.9.1.1 PDB: 2jyo_A 2hci_A
Probab=20.62 E-value=48 Score=20.25 Aligned_cols=19 Identities=16% Similarity=0.504 Sum_probs=14.2
Q ss_pred ceEEEEeCCChhHHHHHHh
Q 046522 60 NGIISVMDPTRSWAARWLR 78 (115)
Q Consensus 60 ~G~I~i~dP~~SwVAk~l~ 78 (115)
.|--.=+||+..||-+++.
T Consensus 43 ~g~~vC~dP~~~WVq~~i~ 61 (70)
T 1m8a_A 43 KKLSVCANPKQTWVKYIVR 61 (70)
T ss_dssp TCCEEEECTTSHHHHHHHH
T ss_pred CCCEEeCCCChHHHHHHHH
Confidence 5543335999999999885
No 124
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=20.47 E-value=48 Score=19.93 Aligned_cols=17 Identities=29% Similarity=0.341 Sum_probs=14.1
Q ss_pred EecCCCcHHHHHHHHhc
Q 046522 90 AVSEALPEDLQNLCEDE 106 (115)
Q Consensus 90 ~V~g~lp~~i~~~l~~~ 106 (115)
.|--.||.||+++|-+.
T Consensus 19 eVF~~LP~dIQ~Ells~ 35 (48)
T 2kwv_A 19 EVFKQLPADIQEEILSG 35 (48)
T ss_dssp GGTTTSCHHHHHHHTTC
T ss_pred HHHHHCcHHHHHHHHhc
Confidence 57789999999998654
No 125
>2i1u_A Thioredoxin, TRX, MPT46; redox protein, electron transport; 1.30A {Mycobacterium tuberculosis} PDB: 3nof_A 3o6t_A* 2l4q_A 2l59_A
Probab=20.15 E-value=25 Score=21.66 Aligned_cols=72 Identities=15% Similarity=0.186 Sum_probs=35.9
Q ss_pred hhccCCCCCCCCCCCCCCcccccccCCCccceEEEEeCCChhHHHHHHhcCCCCCeeeE-------EEecCCCcH-HHHH
Q 046522 30 QFRESGCENCPFFKMDEDHERVVDCTTPNFNGIISVMDPTRSWAARWLRIGRFVPGCYT-------LAVSEALPE-DLQN 101 (115)
Q Consensus 30 qf~~~gCpnC~~l~m~~~~d~v~~~tT~~f~G~I~i~dP~~SwVAk~l~i~~~~pG~YA-------i~V~g~lp~-~i~~ 101 (115)
.|....||.|... ...-+++.+-...++ -++.|--.+...+++.+++.. +|-.+- .+..|..+. ++.+
T Consensus 36 ~f~~~~C~~C~~~--~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~i~~-~Pt~~~~~~g~~~~~~~G~~~~~~l~~ 111 (121)
T 2i1u_A 36 DFWATWCGPCKMV--APVLEEIATERATDL-TVAKLDVDTNPETARNFQVVS-IPTLILFKDGQPVKRIVGAKGKAALLR 111 (121)
T ss_dssp EEECTTCHHHHHH--HHHHHHHHHHTTTTC-EEEEEETTTCHHHHHHTTCCS-SSEEEEEETTEEEEEEESCCCHHHHHH
T ss_pred EEECCCCHHHHHH--HHHHHHHHHHhcCCe-EEEEEECCCCHHHHHhcCCCc-CCEEEEEECCEEEEEecCCCCHHHHHH
Confidence 3566789999821 011112222111111 233332233567899999875 554433 335566654 4666
Q ss_pred HHHh
Q 046522 102 LCED 105 (115)
Q Consensus 102 ~l~~ 105 (115)
.|++
T Consensus 112 ~l~~ 115 (121)
T 2i1u_A 112 ELSD 115 (121)
T ss_dssp HTCS
T ss_pred HHHH
Confidence 5553
No 126
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=20.12 E-value=31 Score=31.68 Aligned_cols=83 Identities=22% Similarity=0.328 Sum_probs=44.4
Q ss_pred cccccccCccc---ccchhhccC---C-CCCCCCCCCC--CCccccc-ccCCCccceEEEEeCC-ChhH-------HHHH
Q 046522 15 ELRACLRCRLV---KTYDQFRES---G-CENCPFFKMD--EDHERVV-DCTTPNFNGIISVMDP-TRSW-------AARW 76 (115)
Q Consensus 15 ~lrAC~~C~~I---~t~~qf~~~---g-CpnC~~l~m~--~~~d~v~-~~tT~~f~G~I~i~dP-~~Sw-------VAk~ 76 (115)
...||..|++- .+...|.-+ | ||.|.-+... -|.+.+. |-.-+--+|.|.-..+ ..+| +|+.
T Consensus 266 ~~~~cp~~g~~~~~~~p~~FSfN~p~GaCp~C~G~G~~~~~d~~~~ipd~~~sl~~gai~~~~~~~~~~~~~~~~~~~~~ 345 (972)
T 2r6f_A 266 EKHACPYCGFSIGELEPRLFSFNSPFGACPDCDGLGAKLEVDLDLVIPNDELTLKEHAIAPWEPQSSQYYPQLLEAVCRH 345 (972)
T ss_dssp SSEECTTTCCEEECCCGGGGCSSSTTTBCTTTTSCCEEEEECHHHHCSSSCCBGGGCSSSSSCC----CHHHHHHHHHHH
T ss_pred ccccCCCCCCcCCCCChhhcCcCCCCCCCCCCcCccceEeeCHHHcCCCCCCchhcCCEeeccCCcchHHHHHHHHHHHH
Confidence 45899999986 345556432 4 9999944211 1111221 1112223444443332 2455 4666
Q ss_pred HhcCCCCCeeeEEEecCCCcHHHHHHHH
Q 046522 77 LRIGRFVPGCYTLAVSEALPEDLQNLCE 104 (115)
Q Consensus 77 l~i~~~~pG~YAi~V~g~lp~~i~~~l~ 104 (115)
.+++-.+| -.+||++..+.|-
T Consensus 346 ~~~~~~~p-------~~~l~~~~~~~~l 366 (972)
T 2r6f_A 346 YGIPMDVP-------VKDLPKEQLDKIL 366 (972)
T ss_dssp HCCCSSCB-------GGGSCHHHHHHHH
T ss_pred cCCCCCCc-------hHHCCHHHHHHHc
Confidence 77776555 4578888887764
Done!