BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046523
         (371 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3ULX|A Chain A, Crystal Structural Of The Conserved Domain Of Rice
           Stress-Responsive Nac1
          Length = 174

 Score =  151 bits (381), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 11/170 (6%)

Query: 6   GELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGP 65
            EL++PPGFRFHPTD+EL+ +YL +K + + + + +I EVDL K +PWDL ++   G+  
Sbjct: 11  AELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFGA-- 68

Query: 66  QNEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFY 125
             EWYFF+ +D+KYP            +WKATG DK +          R +G++K LVFY
Sbjct: 69  -REWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPV------APRGRTLGIKKALVFY 121

Query: 126 TGRAPHGQKTDWIMHEYRLDDDEYXXXXXEV--VQEDGWVVCRVFKKKNH 173
            G+AP G KTDWIMHEYRL D        +   ++ D WV+CR++ KKN 
Sbjct: 122 AGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDDWVLCRLYNKKNE 171


>pdb|1UT4|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT4|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|A Chain A, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|1UT7|B Chain B, Structure Of The Conserved Domain Of Anac, A Member Of The
           Nac Family Of Transcription Factors
 pdb|4DUL|A Chain A, Anac019 Nac Domain Crystal Form Iv
 pdb|4DUL|B Chain B, Anac019 Nac Domain Crystal Form Iv
          Length = 171

 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 12/170 (7%)

Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   G   +
Sbjct: 14  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 70

Query: 67  NEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFFS +D+KYP            +WKATG DK I          +R+G++K LVFY 
Sbjct: 71  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKALVFYI 124

Query: 127 GRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINR 176
           G+AP G KT+WIMHEYRL +        ++   D WV+CR++KK++   +
Sbjct: 125 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL---DDWVLCRIYKKQSSAQK 171


>pdb|3SWM|A Chain A, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|B Chain B, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|C Chain C, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWM|D Chain D, The Nac Domain Of Anac019 In Complex With Dna, Gold
           Derivative
 pdb|3SWP|A Chain A, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|B Chain B, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|C Chain C, Anac019 Nac Domain In Complex With Dna
 pdb|3SWP|D Chain D, Anac019 Nac Domain In Complex With Dna
          Length = 174

 Score =  150 bits (380), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 74/170 (43%), Positives = 103/170 (60%), Gaps = 12/170 (7%)

Query: 7   ELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQ 66
           +LS+PPGFRF+PTDEEL+  YL +K +     L +I E+DL K +PW L +K   G   +
Sbjct: 17  QLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALFG---E 73

Query: 67  NEWYFFSHKDKKYPXXXXXXXXXXXXFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYT 126
            EWYFFS +D+KYP            +WKATG DK I          +R+G++K LVFY 
Sbjct: 74  KEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDKIIS------TEGQRVGIKKALVFYI 127

Query: 127 GRAPHGQKTDWIMHEYRLDDDEYXXXXXEVVQEDGWVVCRVFKKKNHINR 176
           G+AP G KT+WIMHEYRL +        ++   D WV+CR++KK++   +
Sbjct: 128 GKAPKGTKTNWIMHEYRLIEPSRRNGSTKL---DDWVLCRIYKKQSSAQK 174


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.134    0.415 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,072,030
Number of Sequences: 62578
Number of extensions: 355266
Number of successful extensions: 637
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 625
Number of HSP's gapped (non-prelim): 4
length of query: 371
length of database: 14,973,337
effective HSP length: 100
effective length of query: 271
effective length of database: 8,715,537
effective search space: 2361910527
effective search space used: 2361910527
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)