Query 046523
Match_columns 371
No_of_seqs 154 out of 988
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:56:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ulx_A Stress-induced transcri 100.0 2E-54 7E-59 391.1 15.1 161 4-173 9-171 (174)
2 1ut7_A No apical meristem prot 100.0 1.4E-53 4.8E-58 384.9 13.8 157 5-173 12-168 (171)
3 1ldd_A APC2WHB, anaphase promo 25.6 35 0.0012 26.2 2.2 28 10-38 36-64 (74)
4 3cpr_A Dihydrodipicolinate syn 12.3 77 0.0026 29.8 1.6 19 9-28 117-135 (304)
5 3fkr_A L-2-keto-3-deoxyarabona 11.6 1.1E+02 0.0037 28.8 2.4 19 9-28 109-130 (309)
6 2vc6_A MOSA, dihydrodipicolina 10.4 98 0.0034 28.8 1.6 18 10-28 102-119 (292)
7 1xky_A Dihydrodipicolinate syn 10.2 1E+02 0.0034 28.9 1.6 19 9-28 113-131 (301)
8 3dz1_A Dihydrodipicolinate syn 10.1 1.1E+02 0.0039 28.7 2.0 18 9-28 108-125 (313)
9 3nr5_A MAF1, repressor of RNA 9.8 82 0.0028 27.6 0.8 13 42-54 119-131 (164)
10 4dox_A Coat protein; all helix 9.7 1.3E+02 0.0043 27.8 2.0 25 9-33 154-178 (226)
No 1
>3ulx_A Stress-induced transcription factor NAC1; NAC family, stress-responsive, DNA binding protein; 2.60A {Oryza sativa subsp} SCOP: b.143.1.1
Probab=100.00 E-value=2e-54 Score=391.13 Aligned_cols=161 Identities=50% Similarity=1.033 Sum_probs=135.6
Q ss_pred CCCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCC
Q 046523 4 GNGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGT 83 (371)
Q Consensus 4 ~~~~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~ 83 (371)
...++.|||||||+|||||||.|||++|+.+.+++.++|+++|||++|||+|++.+..+ +++|||||++++||++|.
T Consensus 9 ~~~~~~LPpGfRF~PTDeELV~~YL~~K~~g~~~~~~~I~evDvy~~~Pw~Lp~~~~~g---~~ewYFFs~r~~ky~~g~ 85 (174)
T 3ulx_A 9 AEAELNLPPGFRFHPTDDELVEHYLCRKAAGQRLPVPIIAEVDLYKFDPWDLPERALFG---AREWYFFTPRDRKYPNGS 85 (174)
T ss_dssp CCSTTTCCTTCCCCCCHHHHHHHTHHHHHHTCCCSSSCCEECCGGGSCGGGSGGGCSSC---SSEEEEEEECCC-----C
T ss_pred cccccCCCCcceeCCCHHHHHHHHHHHHhcCCCCCcCeeeecccccCCchhhhhhhccC---CceEEEEeccccccCCCC
Confidence 35678999999999999999999999999999999999999999999999999986533 579999999999999999
Q ss_pred cccccccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCC--cccccCCc
Q 046523 84 RTNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSS--SEVVQEDG 161 (371)
Q Consensus 84 R~nR~tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~~~~~~~~~--~~~~~~~~ 161 (371)
|+||+|++||||++|+++.|... +.+||+||+|+||.|+++++.||+|+||||+|......... ......++
T Consensus 86 R~nR~t~~G~WkatG~dk~I~~~------g~~vG~KktLvFy~g~~p~g~kT~WvMhEY~L~~~~~~~~~~~~~~~~~~~ 159 (174)
T 3ulx_A 86 RPNRAAGNGYWKATGADKPVAPR------GRTLGIKKALVFYAGKAPRGVKTDWIMHEYRLADAGRAAAGAKKGSLRLDD 159 (174)
T ss_dssp CSCEEETTEEEEECSCCEEECCS------SSCCEEEEEEEEEESSTTSCEEEEEEEEEEEECSCC-----------CCSS
T ss_pred CceeecCCceEccCCCCcEEeeC------CcEEEEEEEEEEecCCCCCCCcCCeEEEEEEeCCCCCcccccccCCCCCCC
Confidence 99999999999999999999764 68999999999999999999999999999999987543211 11235689
Q ss_pred EEEEEEEEeCCC
Q 046523 162 WVVCRVFKKKNH 173 (371)
Q Consensus 162 ~VLCRIykK~~~ 173 (371)
|||||||+|++.
T Consensus 160 wVlCrvf~K~~~ 171 (174)
T 3ulx_A 160 WVLCRLYNKKNE 171 (174)
T ss_dssp EEEEEEEESCC-
T ss_pred EEEEEEEEcCCC
Confidence 999999999864
No 2
>1ut7_A No apical meristem protein; transcription regulation, transcription, transcription factor, DNA binding, abscisic acid response, NAC domain; 1.9A {Arabidopsis thaliana} SCOP: b.143.1.1 PDB: 1ut4_A 4dul_A 3swp_A 3swm_A
Probab=100.00 E-value=1.4e-53 Score=384.87 Aligned_cols=157 Identities=50% Similarity=0.984 Sum_probs=131.1
Q ss_pred CCCCCCCCCceeCCChHHHHHHHHHHhhcCCCCCcCeeeeccCCCCCCCCcccccccCCCCCceeEEEeccCCCCCCCCc
Q 046523 5 NGELSVPPGFRFHPTDEELLYYYLRKKVSFEAIDLDVIREVDLNKLEPWDLKDKCRIGSGPQNEWYFFSHKDKKYPTGTR 84 (371)
Q Consensus 5 ~~~~~LPpGfRF~PTDeELV~~YL~~Kv~g~pl~~~~I~evDVy~~ePwdL~~~~~~g~g~~~eWYFFs~r~kK~~~G~R 84 (371)
..++.|||||||+|||||||.|||++|+.+.+++.++|+++|||.+|||+|++.... .+++|||||++++||++|.|
T Consensus 12 ~~~~~lPpGfRF~PTDeELv~~YL~~K~~g~~~~~~~I~e~Diy~~~Pw~Lp~~~~~---g~~ewyFFs~r~~k~~~g~R 88 (171)
T 1ut7_A 12 LTQLSLPPGFRFYPTDEELMVQYLCRKAAGYDFSLQLIAEIDLYKFDPWVLPNKALF---GEKEWYFFSPRDRKYPNGSR 88 (171)
T ss_dssp CCSSCCCTTEEECCCHHHHHHHTHHHHHTTCCCSSCCSEECCGGGSCGGGHHHHSSS---CSSEEEEEEECCC-------
T ss_pred ccccCCCCcceeCCChHHHHHHHHHHHhcCCCCCCCeEeecccccCChhHhhchhhc---CCccEEEEeccccccCCCCc
Confidence 456799999999999999999999999999999999999999999999999998643 26899999999999999999
Q ss_pred ccccccCCeEeeccCCccEEeccccCCCCeeeEEEEEEEeecCCCCCCCCcCeEEEEEEeCCCCCCCCCcccccCCcEEE
Q 046523 85 TNRATTAGFWKATGRDKAIHITMANVNSSRRIGMRKTLVFYTGRAPHGQKTDWIMHEYRLDDDEYSSSSSEVVQEDGWVV 164 (371)
Q Consensus 85 ~nR~tggG~WK~tG~~K~I~~~~~~~~~g~~IG~KktL~Fy~gr~p~g~kT~WiMhEY~L~~~~~~~~~~~~~~~~~~VL 164 (371)
+||+|++||||++|+++.|... +.+||+||+|+||+|+++++.||+|+||||+|...... ......++|||
T Consensus 89 ~~R~t~~G~Wk~tG~~k~I~~~------~~~vG~KktLvFy~g~~p~g~kT~WvMhEY~l~~~~~~---~~~~~~~~~Vl 159 (171)
T 1ut7_A 89 PNRVAGSGYWKATGTDKIISTE------GQRVGIKKALVFYIGKAPKGTKTNWIMHEYRLIEPSRR---NGSTKLDDWVL 159 (171)
T ss_dssp CCEEETTEEEEEEEEEEEEEET------TEEEEEEEEEEEEESSTTSCEEEEEEEEEEEECCCC-----------CCEEE
T ss_pred ccccCCCCEEeccCCCceEEec------CcEEEEEEEEEEEcCcCCCCCcCCeEEEEEEcCCCccc---cCcccCCCEEE
Confidence 9999999999999999999875 69999999999999999999999999999999987521 11235689999
Q ss_pred EEEEEeCCC
Q 046523 165 CRVFKKKNH 173 (371)
Q Consensus 165 CRIykK~~~ 173 (371)
||||+|+..
T Consensus 160 Crv~~k~~~ 168 (171)
T 1ut7_A 160 CRIYKKQSS 168 (171)
T ss_dssp EEEEECC--
T ss_pred EEEEEcCCC
Confidence 999999865
No 3
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=25.60 E-value=35 Score=26.18 Aligned_cols=28 Identities=21% Similarity=0.315 Sum_probs=23.0
Q ss_pred CCCCceeCC-ChHHHHHHHHHHhhcCCCCC
Q 046523 10 VPPGFRFHP-TDEELLYYYLRKKVSFEAID 38 (371)
Q Consensus 10 LPpGfRF~P-TDeELV~~YL~~Kv~g~pl~ 38 (371)
.|.|+.|.. |++||-. ||-.|+....+.
T Consensus 36 ~~~~~~~~~it~~eL~~-fL~~~v~e~kL~ 64 (74)
T 1ldd_A 36 VPKDWGYNRITLQQLEG-YLNTLADEGRLK 64 (74)
T ss_dssp SCGGGCCTTCCHHHHHH-HHHHHHHTTSEE
T ss_pred CCCCCCCCcCCHHHHHH-HHHHHHhCCeEE
Confidence 367899998 9999888 799999877543
No 4
>3cpr_A Dihydrodipicolinate synthetase; (beta/alpha)8-barrel fold with A C-terminal alpha-helical segment, amino-acid biosynthesis, cytoplasm; HET: MCL; 2.20A {Corynebacterium glutamicum}
Probab=12.31 E-value=77 Score=29.79 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=15.1
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 046523 9 SVPPGFRFHPTDEELLYYYL 28 (371)
Q Consensus 9 ~LPpGfRF~PTDeELV~~YL 28 (371)
-+|| |.|.||+++|+.||-
T Consensus 117 v~~P-~y~~~~~~~l~~~f~ 135 (304)
T 3cpr_A 117 VVTP-YYSKPSQEGLLAHFG 135 (304)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred ECCC-CCCCCCHHHHHHHHH
Confidence 3566 568999999999874
No 5
>3fkr_A L-2-keto-3-deoxyarabonate dehydratase; DHDPS/NAL family, complex, pyruvate, lyase; HET: KPI; 1.80A {Azospirillum brasilense} PDB: 3fkk_A
Probab=11.55 E-value=1.1e+02 Score=28.85 Aligned_cols=19 Identities=21% Similarity=0.836 Sum_probs=15.0
Q ss_pred CCCCCce---eCCChHHHHHHHH
Q 046523 9 SVPPGFR---FHPTDEELLYYYL 28 (371)
Q Consensus 9 ~LPpGfR---F~PTDeELV~~YL 28 (371)
-+|| |. |.||+++|+.||-
T Consensus 109 v~~P-yy~~~~~~s~~~l~~~f~ 130 (309)
T 3fkr_A 109 AMPP-YHGATFRVPEAQIFEFYA 130 (309)
T ss_dssp ECCS-CBTTTBCCCHHHHHHHHH
T ss_pred EcCC-CCccCCCCCHHHHHHHHH
Confidence 4677 54 8999999999864
No 6
>2vc6_A MOSA, dihydrodipicolinate synthase; DHDPS, TIM barrel, schiff base, lyase; HET: MCL; 1.95A {Sinorhizobium meliloti}
Probab=10.35 E-value=98 Score=28.78 Aligned_cols=18 Identities=28% Similarity=0.517 Sum_probs=14.5
Q ss_pred CCCCceeCCChHHHHHHHH
Q 046523 10 VPPGFRFHPTDEELLYYYL 28 (371)
Q Consensus 10 LPpGfRF~PTDeELV~~YL 28 (371)
+|| |.|.||+++|+.||-
T Consensus 102 ~~P-~y~~~s~~~l~~~f~ 119 (292)
T 2vc6_A 102 VSP-YYNKPTQEGIYQHFK 119 (292)
T ss_dssp ECC-CSSCCCHHHHHHHHH
T ss_pred cCC-CCCCCCHHHHHHHHH
Confidence 455 568999999999874
No 7
>1xky_A Dihydrodipicolinate synthase; TIM barrel, , lysine biosynthesis;spine, lyase; 1.94A {Bacillus anthracis} SCOP: c.1.10.1 PDB: 1xl9_A 3hij_A*
Probab=10.16 E-value=1e+02 Score=28.93 Aligned_cols=19 Identities=21% Similarity=0.434 Sum_probs=14.8
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 046523 9 SVPPGFRFHPTDEELLYYYL 28 (371)
Q Consensus 9 ~LPpGfRF~PTDeELV~~YL 28 (371)
-+|| |.|.||+++|+.||-
T Consensus 113 v~~P-~y~~~s~~~l~~~f~ 131 (301)
T 1xky_A 113 LVAP-YYNKPSQEGMYQHFK 131 (301)
T ss_dssp EECC-CSSCCCHHHHHHHHH
T ss_pred EcCC-CCCCCCHHHHHHHHH
Confidence 3456 568999999999873
No 8
>3dz1_A Dihydrodipicolinate synthase; lysine biosynthesis, pyruvate, TIM barrel, NYSGXRC, PSI2, structural genomics; 1.87A {Rhodopseudomonas palustris} SCOP: c.1.10.0
Probab=10.08 E-value=1.1e+02 Score=28.72 Aligned_cols=18 Identities=33% Similarity=0.540 Sum_probs=13.8
Q ss_pred CCCCCceeCCChHHHHHHHH
Q 046523 9 SVPPGFRFHPTDEELLYYYL 28 (371)
Q Consensus 9 ~LPpGfRF~PTDeELV~~YL 28 (371)
-+||- |.||+++|+.||-
T Consensus 108 v~~P~--~~~s~~~l~~~f~ 125 (313)
T 3dz1_A 108 IAPPP--SLRTDEQITTYFR 125 (313)
T ss_dssp ECCCT--TCCSHHHHHHHHH
T ss_pred ECCCC--CCCCHHHHHHHHH
Confidence 46674 5699999999864
No 9
>3nr5_A MAF1, repressor of RNA polymerase III transcription MAF; RNA-POL III transcriptional repressor, RNA-POL III; 1.55A {Homo sapiens}
Probab=9.81 E-value=82 Score=27.65 Aligned_cols=13 Identities=23% Similarity=0.291 Sum_probs=10.9
Q ss_pred eeeccCCCCCCCC
Q 046523 42 IREVDLNKLEPWD 54 (371)
Q Consensus 42 I~evDVy~~ePwd 54 (371)
+.++|||.+.|..
T Consensus 119 l~dC~IYsY~Pd~ 131 (164)
T 3nr5_A 119 LAECDIYSYNPDL 131 (164)
T ss_dssp GGGCEEEEECCCG
T ss_pred ccCCeEEEEcCCC
Confidence 6778999999973
No 10
>4dox_A Coat protein; all helix capsid protein, virus capsid structure, viral PROT; 2.70A {Papaya mosaic virus}
Probab=9.75 E-value=1.3e+02 Score=27.81 Aligned_cols=25 Identities=32% Similarity=0.418 Sum_probs=17.0
Q ss_pred CCCCCceeCCChHHHHHHHHHHhhc
Q 046523 9 SVPPGFRFHPTDEELLYYYLRKKVS 33 (371)
Q Consensus 9 ~LPpGfRF~PTDeELV~~YL~~Kv~ 33 (371)
.-+-|..+.||++|+|.+=..+++.
T Consensus 154 ~P~~GLiR~PT~~E~iA~~t~K~ia 178 (226)
T 4dox_A 154 QPPSGLTRSPTQEERIANATNKQVH 178 (226)
T ss_dssp CCTTCCSSCCCHHHHHHHHTC----
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHH
Confidence 3344899999999999986655443
Done!