BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046527
(380 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZZN|A Chain A, The Complex Structure Of Atrm5 And Trnacys
pdb|2ZZN|B Chain B, The Complex Structure Of Atrm5 And Trnacys
pdb|3AY0|A Chain A, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
pdb|3AY0|B Chain B, Crystal Structure Of Methanocaldococcus Jannaschii Trm5 In
Complex With Adenosine
Length = 336
Score = 82.4 bits (202), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 72/125 (57%), Gaps = 1/125 (0%)
Query: 31 KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
K V + + EFRV E E LAGE+ +T K+ G +D + VY++ RL E RI+
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIM 190
Query: 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
+ + + DMFAG+GPF+I A + ++A D+NP ++ LK N K+NK+++ +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
D RE
Sbjct: 250 SDVRE 254
>pdb|2ZZM|A Chain A, The Complex Structure Of Atrm5 And Trnaleu
Length = 336
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 71/125 (56%), Gaps = 1/125 (0%)
Query: 31 KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
K V + + EFRV E E LAGE+ +T K+ G +D + VY++ RL E RI+
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIM 190
Query: 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
+ + + DMFAG+GPF+I A + ++A D+NP ++ L N K+NK+++ +
Sbjct: 191 KKVSLNDVVVDMFAGVGPFSI-ACKNAKKIYAIDINPHAIELLXKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
D RE
Sbjct: 250 SDVRE 254
>pdb|3A25|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Adomet
pdb|3A26|A Chain A, Crystal Structure Of P. Horikoshii Tyw2 In Complex With
Mesado
Length = 301
Score = 79.0 bits (193), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 74/128 (57%), Gaps = 3/128 (2%)
Query: 30 IKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRI 89
+KTV+ K G I E R P++E+L G D + V+ G +KLD + + ++ E +R+
Sbjct: 85 VKTVLRK-GHIHGETRKPDYELLYGSDTVTVHVEN-GIKYKLDVAKIMFSPANVKERVRM 142
Query: 90 ISQFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRA 148
+P E + DMFAGIG ++P A G V A + +P + +L N +NKV++ + A
Sbjct: 143 AKVAKPDELVVDMFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRMSA 202
Query: 149 YNMDAREF 156
YNMD R+F
Sbjct: 203 YNMDNRDF 210
>pdb|2YX1|A Chain A, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
pdb|2YX1|B Chain B, Crystal Structure Of M.Jannaschii Trna M1g37
Methyltransferase
Length = 336
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 70/125 (56%), Gaps = 1/125 (0%)
Query: 31 KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
K V + + EFRV E E LAGE+ +T K+ G +D + VY++ RL E RI
Sbjct: 131 KGVFRRKSEVKGEFRVRELEHLAGENRTLTIHKENGYRLWVDIAKVYFSPRLGGERARIX 190
Query: 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150
+ + + D FAG+GPF+I A + ++A D+NP ++ LK N K+NK+++ +
Sbjct: 191 KKVSLNDVVVDXFAGVGPFSI-ACKNAKKIYAIDINPHAIELLKKNIKLNKLEHKIIPIL 249
Query: 151 MDARE 155
D RE
Sbjct: 250 SDVRE 254
>pdb|3A27|A Chain A, Crystal Structure Of M. Jannaschii Tyw2 In Complex With
Adomet
Length = 272
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/118 (37%), Positives = 64/118 (54%), Gaps = 3/118 (2%)
Query: 31 KTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII 90
K ++ I EFR P +IL G++ K+YG FKLD + + W+ E R+
Sbjct: 56 KAILLYTTQITGEFRTPHVKILYGKETETIH-KEYGCLFKLDVAKIMWSQGNIEERKRMA 114
Query: 91 SQFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYV 146
E + DMFAGIG F IP A+ K +V+A + NP + HYL N K+NK++N +
Sbjct: 115 FISNENEVVVDMFAGIGYFTIPLAKYSKPKLVYAIEKNPTAYHYLCENIKLNKLNNVI 172
>pdb|3K6R|A Chain A, Crystal Structure Of Putative Transferase Ph0793 From
Pyrococcus Horikoshii
Length = 278
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 3/128 (2%)
Query: 30 IKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRI 89
+KTV+ K G I E R P++E+L G D + V+ G +KLD + + ++ E +R
Sbjct: 62 VKTVLRK-GHIHGETRKPDYELLYGSDTVTVHVEN-GIKYKLDVAKIXFSPANVKERVRX 119
Query: 90 ISQFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRA 148
+P E + D FAGIG ++P A G V A + +P + +L N +NKV++ A
Sbjct: 120 AKVAKPDELVVDXFAGIGHLSLPIAVYGKAKVIAIEKDPYTFKFLVENIHLNKVEDRXSA 179
Query: 149 YNMDAREF 156
YN D R+F
Sbjct: 180 YNXDNRDF 187
>pdb|2VS1|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
+R +S+ GE I DM++G+G F I A++G V D N ++ + N ++N VD
Sbjct: 282 VRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD 338
>pdb|2JJQ|A Chain A, The Crystal Structure Of Pyrococcus Abyssi Trna
(Uracil-54, C5)-Methyltransferase In Complex With
S-Adenosyl-L- Homocysteine
Length = 425
Score = 41.6 bits (96), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
+R +S+ GE I DM++G+G F I A++G V D N ++ + N ++N VD
Sbjct: 282 VRKVSELVEGEKILDMYSGVGTFGIYLAKRGFNVKGFDSNEFAIEMARRNVEINNVD 338
>pdb|2AS0|A Chain A, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
pdb|2AS0|B Chain B, Crystal Structure Of Ph1915 (Apc 5817): A Hypothetical Rna
Methyltransferase
Length = 396
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 5/122 (4%)
Query: 28 PRIKTVVNK-VGTIANEFRVPEFE-ILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHE 85
P I+TV K G +PE E +L G++ T +++ A F +D L+
Sbjct: 146 PGIETVFEKNTGRSRRREGLPEIERVLLGKEKYRTIIQEGRAKFIVDXRGQKTGFFLDQR 205
Query: 86 HLRIISQ--FRPGETICDMFAGIGPFAIPAAQKGCI-VFANDLNPDSVHYLKINAKVNKV 142
R+ + +PG+ + D+F G FAI AA G V D +P ++ K NAK+N V
Sbjct: 206 ENRLALEKWVQPGDRVLDVFTYTGGFAIHAAIAGADEVIGIDKSPRAIETAKENAKLNGV 265
Query: 143 DN 144
++
Sbjct: 266 ED 267
>pdb|4DMG|A Chain A, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
pdb|4DMG|B Chain B, Thermus Thermophilus M5c1942 Methyltransferase Rlmo
Length = 393
Score = 35.4 bits (80), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFAND 124
+ RPGE + D+++ +G FA+ AA+KG A D
Sbjct: 210 AMVRPGERVLDVYSYVGGFALRAARKGAYALAVD 243
>pdb|2BH2|A Chain A, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine.
pdb|2BH2|B Chain B, Crystal Structure Of E. Coli 5-Methyluridine
Methyltransferase Ruma In Complex With Ribosomal Rna
Substrate And S-Adenosylhomocysteine
Length = 433
Score = 32.7 bits (73), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144
+P + + D+F G+G F +P A + V + P V + NA++N + N
Sbjct: 285 QPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335
>pdb|1UWV|A Chain A, Crystal Structure Of Ruma, The Iron-Sulfur Cluster
Containing E. Coli 23s Ribosomal Rna 5-Methyluridine
Methyltransferase
Length = 433
Score = 31.6 bits (70), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144
+P + + D+F G G F +P A + V + P V + NA++N + N
Sbjct: 285 QPEDRVLDLFCGXGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLQN 335
>pdb|3KLK|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180 In Triclinic Apo- Form
Length = 1039
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 144 NYVRAYNMDAREFIRQLMTA----PAGEINSESDVFNLKACGNSGIQANKKTGIENV 196
N+VRA++ +A++ IRQ + A P GE N + + ++A N NKK + N+
Sbjct: 391 NFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNM 447
>pdb|3HZ3|A Chain A, Lactobacillus Reuteri N-Terminally Truncated Glucansucrase
Gtf180(D1025n)-Sucrose Complex
Length = 1039
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 32/57 (56%), Gaps = 4/57 (7%)
Query: 144 NYVRAYNMDAREFIRQLMTA----PAGEINSESDVFNLKACGNSGIQANKKTGIENV 196
N+VRA++ +A++ IRQ + A P GE N + + ++A N NKK + N+
Sbjct: 391 NFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGMEAYINDQNSTNKKWNLYNM 447
>pdb|4DWJ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|C Chain C, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|D Chain D, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|E Chain E, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|F Chain F, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|G Chain G, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4DWJ|H Chain H, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With Thymidine
Monophosphate
pdb|4EAQ|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4EAQ|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Complex With
3'-Azido-3'-Deoxythymidine-5'-Monophosphate
pdb|4F4I|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
pdb|4F4I|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus In Apo-Form
Length = 229
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 74 SLVYWNSRLEHEHLRIISQFRPGETI-CDMFA-----------GIGPFAIPAAQKGCIVF 121
++++ SR EH L++I + G+ + CD + GIG + A + I
Sbjct: 87 AMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAI-- 144
Query: 122 ANDLNPDSVHYLKINAKVNK 141
N L PD YL ++A+V +
Sbjct: 145 -NGLYPDLTIYLNVSAEVGR 163
>pdb|2CCJ|A Chain A, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCJ|B Chain B, Crystal Structure Of S. Aureus Thymidylate Kinase
Complexed With Thymidine Monophosphate
pdb|2CCK|A Chain A, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|2CCK|B Chain B, Crystal Structure Of Unliganded S. Aureus Thymidylate
Kinase
pdb|4GFD|A Chain A, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GFD|B Chain B, Thymidylate Kinase (Tmk) From S. Aureus In Complex With
Tk-666
pdb|4GSY|A Chain A, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4GSY|B Chain B, Crystal Structure Of Thymidylate Kinase From
Staphylococcus Aureus Bound To Inhibitor.
pdb|4HDC|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HDC|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk:
Compound 41)
pdb|4HEJ|A Chain A, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HEJ|B Chain B, Discovery Of Selective And Potent Inhibitors Of
Gram-Positive Bacterial Thymidylate Kinase (Tmk):
Compund 16
pdb|4HLC|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLC|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 5
pdb|4HLD|A Chain A, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
pdb|4HLD|B Chain B, Sulfonylpiperidines As Novel, Antibacterial Inhibitors Of
Gram- Positive Thymidylate Kinase (Tmk): Compound 11
Length = 205
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 74 SLVYWNSRLEHEHLRIISQFRPGETI-CDMFA-----------GIGPFAIPAAQKGCIVF 121
++++ SR EH L++I + G+ + CD + GIG + A + I
Sbjct: 63 AMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAI-- 120
Query: 122 ANDLNPDSVHYLKINAKVNK 141
N L PD YL ++A+V +
Sbjct: 121 -NGLYPDLTIYLNVSAEVGR 139
>pdb|2CWW|A Chain A, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
pdb|2CWW|B Chain B, Crystal Structure Of Thermus Thermophilus Ttha1280, A
Putative Sam- Dependent Rna Methyltransferase, In
Complex With S-Adenosyl-L- Homocysteine
Length = 382
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 46/101 (45%), Gaps = 10/101 (9%)
Query: 90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAY 149
+ +FR GE D+F+ G FA+ A V A D + +++ + NA++N + N VR
Sbjct: 205 MERFR-GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVL 262
Query: 150 NMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKK 190
+A + +R+L E + F+L KK
Sbjct: 263 EANAFDLLRRL--------EKEGERFDLVVLDPPAFAKGKK 295
>pdb|2CCG|A Chain A, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
pdb|2CCG|B Chain B, Crystal Structure Of His-Tagged S. Aureus Thymidylate
Kinase Complexed With Thymidine Monophosphate (Tmp)
Length = 225
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 15/80 (18%)
Query: 74 SLVYWNSRLEHEHLRIISQFRPGETI-CDMFA-----------GIGPFAIPAAQKGCIVF 121
++++ SR EH L++I + G+ + CD + GIG + A + I
Sbjct: 83 AMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAI-- 140
Query: 122 ANDLNPDSVHYLKINAKVNK 141
N L PD YL ++A+V +
Sbjct: 141 -NGLYPDLTIYLNVSAEVGR 159
>pdb|1VBJ|A Chain A, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
pdb|1VBJ|B Chain B, The Crystal Structure Of Prostaglandin F Synthase From
Trypanosoma Brucei
Length = 281
Score = 29.6 bits (65), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 212 NSEGLQNYCRNADASVTATKRPSDGCLEENGTTNSASGRKGKTSKRM 258
N + L YC++ + +VTA G L E+ + G+ GKT+ ++
Sbjct: 174 NQKALCEYCKSKNIAVTAWSPLGQGHLVEDARLKAIGGKYGKTAAQV 220
>pdb|1WXW|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXW|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|A Chain A, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|B Chain B, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|C Chain C, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
pdb|1WXX|D Chain D, Crystal Structure Of Tt1595, A Putative Sam-Dependent
Methyltransferase From Thermus Thermophillus Hb8
Length = 382
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 10/99 (10%)
Query: 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151
+FR GE D+F+ G FA+ A V A D + +++ + NA++N + N VR
Sbjct: 207 RFR-GERALDVFSYAGGFALHLALGFREVVAVDSSAEALRRAEENARLNGLGN-VRVLEA 264
Query: 152 DAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKK 190
+A + +R+L E + F+L KK
Sbjct: 265 NAFDLLRRL--------EKEGERFDLVVLDPPAFAKGKK 295
>pdb|4AFR|A Chain A, The Structure Of Metacaspase 2 (C213a Mutant) From T.
Brucei
pdb|4AFV|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Calcium Chloride
Length = 367
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 70 KLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC 118
++D + +++ H H ++ PG+T+ +F GI + AA GC
Sbjct: 64 RVDVDAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGC 112
>pdb|4AFP|A Chain A, The Structure Of Metacaspase 2 From T. Brucei Determined
In The Presence Of Samarium
Length = 367
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 70 KLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC 118
++D + +++ H H ++ PG+T+ +F GI + AA GC
Sbjct: 64 RVDVDAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGC 112
>pdb|4AF8|A Chain A, The Structural Basis For Metacaspase Substrate Specificity
And Activation
Length = 367
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 70 KLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC 118
++D + +++ H H ++ PG+T+ +F GI + AA GC
Sbjct: 64 RVDVDAAFRDAKGLHGHQPWVATPLPGQTVRALFIGINYYGTSAALSGC 112
>pdb|3FGB|A Chain A, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b.
pdb|3FGB|B Chain B, Crystal Structure Of The Q89zh8_bactn Protein From
Bacteroides Thetaiotaomicron. Northeast Structural
Genomics Consortium Target Btr289b
Length = 361
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 117 GCIVFANDLNPDSVHYLKI--NAKVNKVDNYVR-----AYNMDAREFIRQLMTAPAG 166
G +FA+DL D +H + NAK + D +++ +Y ++A R L AP G
Sbjct: 158 GKYLFADDLGTDQIHKFIVNPNAKADNEDVFLKEGSPASYKVEAGSGPRHLTFAPNG 214
>pdb|1DUS|A Chain A, Mj0882-A Hypothetical Protein From M. Jannaschii
Length = 194
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDARE 155
+ I D+ G G I A + D+N ++ K N K+N +DNY +R + D E
Sbjct: 54 DDILDLGCGYGVIGIALADEVKSTTXADINRRAIKLAKENIKLNNLDNYDIRVVHSDLYE 113
Query: 156 FIR-----QLMTAP 164
++ +++T P
Sbjct: 114 NVKDRKYNKIITNP 127
>pdb|3KLL|A Chain A, Crystal Structure Of Lactobacillus Reuteri N-Terminally
Truncated Glucansucrase Gtf180-Maltose Complex
Length = 1039
Score = 28.9 bits (63), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 144 NYVRAYNMDAREFIRQLMTA----PAGEINSESDVFNLKACGNSGIQANKKTGIEN 195
N+VRA++ +A++ IRQ + A P GE N + + +A N NKK + N
Sbjct: 391 NFVRAHDSNAQDQIRQAIQAATGKPYGEFNLDDEKKGXEAYINDQNSTNKKWNLYN 446
>pdb|4GVL|A Chain A, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|B Chain B, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|C Chain C, Crystal Structure Of The Gsuk Rck Domain
pdb|4GVL|D Chain D, Crystal Structure Of The Gsuk Rck Domain
Length = 462
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 84 HEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
H H+RI+++ E + ++A F + A G + N L +L V
Sbjct: 330 HSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFLSEGMAV---- 385
Query: 144 NYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGI 193
F R L A AG+ +E+ + L C I+A + I
Sbjct: 386 ------------FRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAPDRADI 423
>pdb|3GDH|A Chain A, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|B Chain B, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
pdb|3GDH|C Chain C, Methyltransferase Domain Of Human Trimethylguanosine
Synthase 1 (Tgs1) Bound To M7gtp And
Adenosyl-Homocysteine (Active Form)
Length = 241
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 83 EHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV 142
EH R+ F+ + + D F G+G I A G V A D++P + + NA+V +
Sbjct: 67 EHIAGRVSQSFK-CDVVVDAFCGVGGNTIQFALTGMRVIAIDIDPVKIALARNNAEVYGI 125
Query: 143 DNYV 146
+ +
Sbjct: 126 ADKI 129
>pdb|4GX0|A Chain A, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|B Chain B, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|C Chain C, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX0|D Chain D, Crystal Structure Of The Gsuk L97d Mutant
pdb|4GX1|A Chain A, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|B Chain B, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|C Chain C, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX1|D Chain D, Crystal Structure Of The Gsuk Bound To Adp
pdb|4GX2|A Chain A, Gsuk Channel Bound To Nad
pdb|4GX2|B Chain B, Gsuk Channel Bound To Nad
pdb|4GX2|C Chain C, Gsuk Channel Bound To Nad
pdb|4GX2|D Chain D, Gsuk Channel Bound To Nad
Length = 565
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 25/110 (22%), Positives = 41/110 (37%), Gaps = 16/110 (14%)
Query: 84 HEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD 143
H H+RI+++ E + ++A F + A G + N L +L V
Sbjct: 433 HSHIRIVARANGEENVDQLYAAGADFVVSNASVGANILGNLLEHKESAFLSEGMAV---- 488
Query: 144 NYVRAYNMDAREFIRQLMTAPAGEINSESDVFNLKACGNSGIQANKKTGI 193
F R L A AG+ +E+ + L C I+A + I
Sbjct: 489 ------------FRRPLPPAMAGKTIAETRLRPLTGCSIVAIEAPDRADI 526
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.133 0.397
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,965,527
Number of Sequences: 62578
Number of extensions: 447323
Number of successful extensions: 1500
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1467
Number of HSP's gapped (non-prelim): 38
length of query: 380
length of database: 14,973,337
effective HSP length: 101
effective length of query: 279
effective length of database: 8,652,959
effective search space: 2414175561
effective search space used: 2414175561
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)