Query 046527
Match_columns 380
No_of_seqs 328 out of 2467
Neff 6.0
Searched_HMMs 46136
Date Fri Mar 29 13:00:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046527.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046527hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2078 tRNA modification enzy 100.0 2E-57 4.4E-62 450.7 18.7 293 1-365 156-458 (495)
2 COG2520 Predicted methyltransf 100.0 1.1E-44 2.4E-49 357.9 26.0 242 1-358 95-340 (341)
3 PF02475 Met_10: Met-10+ like- 100.0 1.3E-41 2.8E-46 315.2 20.1 157 1-158 8-166 (200)
4 PRK15128 23S rRNA m(5)C1962 me 99.8 2.5E-18 5.5E-23 174.6 25.8 155 2-161 123-288 (396)
5 COG1092 Predicted SAM-dependen 99.8 6.6E-18 1.4E-22 170.8 17.6 156 2-161 119-285 (393)
6 TIGR00479 rumA 23S rRNA (uraci 99.8 1.5E-16 3.3E-21 162.8 24.1 147 10-160 205-356 (431)
7 PF10672 Methyltrans_SAM: S-ad 99.8 4.9E-17 1.1E-21 158.6 19.5 154 2-161 25-191 (286)
8 COG2265 TrmA SAM-dependent met 99.7 2E-16 4.3E-21 162.2 19.1 142 12-160 211-357 (432)
9 TIGR02085 meth_trns_rumB 23S r 99.7 1.8E-15 3.9E-20 152.7 23.3 141 13-157 149-294 (374)
10 PRK11783 rlmL 23S rRNA m(2)G24 99.7 9.9E-16 2.1E-20 165.9 20.5 152 1-159 437-604 (702)
11 PRK03522 rumB 23S rRNA methylu 99.7 4.4E-15 9.5E-20 146.4 23.3 141 13-157 89-234 (315)
12 KOG2187 tRNA uracil-5-methyltr 99.6 1.1E-15 2.4E-20 156.7 11.2 145 13-162 296-449 (534)
13 PRK05031 tRNA (uracil-5-)-meth 99.6 1.2E-13 2.5E-18 139.1 20.3 136 14-161 131-271 (362)
14 PRK13168 rumA 23S rRNA m(5)U19 99.5 5.3E-13 1.2E-17 137.4 18.2 93 65-158 263-359 (443)
15 PF05958 tRNA_U5-meth_tr: tRNA 99.5 1.8E-13 3.9E-18 137.2 10.3 111 50-161 146-261 (352)
16 KOG1227 Putative methyltransfe 99.5 1.6E-13 3.6E-18 132.8 9.1 145 2-150 100-251 (351)
17 TIGR02143 trmA_only tRNA (urac 99.4 1.6E-12 3.5E-17 130.4 14.6 111 49-160 146-261 (353)
18 PRK04338 N(2),N(2)-dimethylgua 99.4 5.7E-12 1.2E-16 127.8 15.2 61 96-157 58-120 (382)
19 TIGR00308 TRM1 tRNA(guanine-26 99.4 3.4E-12 7.4E-17 129.1 13.5 96 63-159 2-110 (374)
20 PF13659 Methyltransf_26: Meth 99.4 8.8E-12 1.9E-16 103.8 11.7 62 96-157 1-63 (117)
21 PRK10909 rsmD 16S rRNA m(2)G96 99.3 7.1E-11 1.5E-15 109.8 16.7 98 48-157 12-115 (199)
22 COG2263 Predicted RNA methylas 99.3 1.2E-10 2.6E-15 106.9 14.0 62 93-156 43-105 (198)
23 COG4123 Predicted O-methyltran 99.3 3E-11 6.5E-16 115.6 10.4 68 92-159 41-110 (248)
24 TIGR00095 RNA methyltransferas 99.2 1.8E-10 3.9E-15 106.1 13.6 68 93-160 47-115 (189)
25 PF05175 MTS: Methyltransferas 99.2 2.9E-10 6.4E-15 102.4 12.3 86 67-154 2-91 (170)
26 TIGR03533 L3_gln_methyl protei 99.1 3.6E-10 7.7E-15 110.3 11.3 89 65-155 88-183 (284)
27 PRK14966 unknown domain/N5-glu 99.1 4.5E-09 9.8E-14 107.5 19.6 87 65-155 221-311 (423)
28 PF03602 Cons_hypoth95: Conser 99.1 6.6E-10 1.4E-14 102.1 12.1 68 94-161 41-109 (183)
29 COG0742 N6-adenine-specific me 99.1 5.4E-10 1.2E-14 102.8 11.2 68 93-160 41-109 (187)
30 TIGR03704 PrmC_rel_meth putati 99.1 5.4E-10 1.2E-14 107.2 11.5 87 65-157 53-146 (251)
31 COG2890 HemK Methylase of poly 99.1 3.6E-10 7.8E-15 110.2 9.9 87 65-154 79-170 (280)
32 TIGR00536 hemK_fam HemK family 99.0 7.9E-10 1.7E-14 107.6 10.1 89 65-155 81-176 (284)
33 PRK11805 N5-glutamine S-adenos 99.0 1E-09 2.2E-14 108.3 10.9 89 65-155 100-195 (307)
34 PF06325 PrmA: Ribosomal prote 99.0 1.1E-09 2.3E-14 107.8 10.0 84 65-148 128-215 (295)
35 PF12847 Methyltransf_18: Meth 99.0 1.5E-09 3.3E-14 89.5 8.7 59 95-153 1-61 (112)
36 TIGR00446 nop2p NOL1/NOP2/sun 99.0 1.1E-08 2.3E-13 98.8 15.2 65 91-156 67-134 (264)
37 PRK00107 gidB 16S rRNA methylt 99.0 1.4E-08 3E-13 93.7 15.2 64 91-155 41-106 (187)
38 PRK14967 putative methyltransf 99.0 7.5E-09 1.6E-13 97.0 13.6 62 92-155 33-95 (223)
39 PRK00377 cbiT cobalt-precorrin 99.0 2.5E-08 5.5E-13 91.8 16.0 66 92-157 37-105 (198)
40 PRK01544 bifunctional N5-gluta 99.0 2.5E-09 5.3E-14 112.3 10.3 89 65-155 82-200 (506)
41 TIGR00406 prmA ribosomal prote 99.0 1E-08 2.3E-13 100.0 13.8 89 64-152 125-217 (288)
42 TIGR00537 hemK_rel_arch HemK-r 98.9 9.3E-09 2E-13 92.9 12.0 61 93-155 17-77 (179)
43 PTZ00338 dimethyladenosine tra 98.9 9.8E-09 2.1E-13 100.9 10.7 90 66-155 7-96 (294)
44 PRK07402 precorrin-6B methylas 98.9 4.4E-08 9.6E-13 89.9 14.4 65 92-157 37-103 (196)
45 TIGR03534 RF_mod_PrmC protein- 98.9 1.4E-07 3.1E-12 88.6 17.9 88 65-155 56-148 (251)
46 TIGR01177 conserved hypothetic 98.9 1.9E-08 4.1E-13 99.9 11.7 64 91-155 178-241 (329)
47 COG2264 PrmA Ribosomal protein 98.8 1.1E-08 2.3E-13 100.5 9.3 80 65-144 129-212 (300)
48 PRK15001 SAM-dependent 23S rib 98.8 5.1E-08 1.1E-12 99.0 14.1 91 62-153 194-290 (378)
49 TIGR00091 tRNA (guanine-N(7)-) 98.8 5.6E-08 1.2E-12 89.4 13.0 64 95-159 16-81 (194)
50 PRK08287 cobalt-precorrin-6Y C 98.8 2.3E-07 5E-12 84.4 16.9 61 92-153 28-90 (187)
51 PRK14902 16S rRNA methyltransf 98.8 5.7E-08 1.2E-12 100.3 14.3 66 90-156 245-313 (444)
52 TIGR00138 gidB 16S rRNA methyl 98.8 5.7E-08 1.2E-12 88.9 12.6 61 95-156 42-104 (181)
53 COG2813 RsmC 16S RNA G1207 met 98.8 2.1E-08 4.5E-13 98.3 10.2 87 65-153 127-217 (300)
54 PRK00517 prmA ribosomal protei 98.8 1.5E-07 3.3E-12 89.9 16.0 83 64-146 85-171 (250)
55 PF09445 Methyltransf_15: RNA 98.8 9.3E-09 2E-13 92.9 6.9 65 97-161 1-65 (163)
56 PF01170 UPF0020: Putative RNA 98.8 1.2E-08 2.6E-13 93.2 6.9 67 90-156 23-100 (179)
57 PRK14968 putative methyltransf 98.8 7.9E-08 1.7E-12 86.2 12.0 61 94-154 22-83 (188)
58 PRK14896 ksgA 16S ribosomal RN 98.8 3.1E-08 6.6E-13 95.3 9.4 76 77-155 11-86 (258)
59 TIGR02469 CbiT precorrin-6Y C5 98.7 1.9E-07 4.1E-12 77.7 12.7 63 92-155 16-80 (124)
60 PLN02672 methionine S-methyltr 98.7 4.9E-08 1.1E-12 109.8 11.6 91 65-157 85-197 (1082)
61 smart00650 rADc Ribosomal RNA 98.7 3.4E-08 7.3E-13 88.7 8.5 62 92-156 10-71 (169)
62 PRK09489 rsmC 16S ribosomal RN 98.7 1.9E-07 4E-12 93.7 14.6 86 65-153 165-254 (342)
63 PRK00121 trmB tRNA (guanine-N( 98.7 1.6E-07 3.4E-12 87.1 12.9 62 95-157 40-103 (202)
64 PRK14904 16S rRNA methyltransf 98.7 1.3E-07 2.9E-12 97.7 13.6 65 91-156 246-313 (445)
65 COG2242 CobL Precorrin-6B meth 98.7 3.1E-08 6.8E-13 91.0 7.8 69 91-160 30-100 (187)
66 PRK09328 N5-glutamine S-adenos 98.7 5.1E-07 1.1E-11 86.4 16.6 86 65-153 76-167 (275)
67 COG2519 GCD14 tRNA(1-methylade 98.7 7.2E-08 1.6E-12 92.4 10.2 66 91-156 90-158 (256)
68 COG0116 Predicted N6-adenine-s 98.7 1.4E-07 3E-12 95.3 12.6 67 90-156 186-293 (381)
69 PF13847 Methyltransf_31: Meth 98.7 4.8E-08 1E-12 85.8 7.8 61 94-155 2-65 (152)
70 PRK11036 putative S-adenosyl-L 98.7 2.2E-07 4.8E-12 88.7 12.9 64 94-157 43-106 (255)
71 KOG2730 Methylase [General fun 98.7 4.9E-08 1.1E-12 91.7 7.9 93 70-162 67-161 (263)
72 PRK14901 16S rRNA methyltransf 98.7 3.3E-07 7.1E-12 94.5 14.7 65 91-156 248-315 (434)
73 PRK14903 16S rRNA methyltransf 98.7 6.2E-07 1.3E-11 92.6 16.7 80 76-156 218-300 (431)
74 PRK12335 tellurite resistance 98.7 4.2E-07 9.1E-12 88.6 14.7 83 69-154 91-177 (287)
75 PRK14121 tRNA (guanine-N(7)-)- 98.7 2E-07 4.4E-12 94.7 12.8 63 95-158 122-186 (390)
76 PRK10901 16S rRNA methyltransf 98.7 3.9E-07 8.6E-12 93.7 14.8 63 91-155 240-304 (427)
77 PRK11727 23S rRNA mA1618 methy 98.6 1.6E-07 3.5E-12 93.4 10.4 61 95-155 114-178 (321)
78 PHA03412 putative methyltransf 98.6 3E-07 6.5E-12 87.8 11.4 54 95-154 49-107 (241)
79 TIGR00080 pimt protein-L-isoas 98.6 2.2E-07 4.8E-12 86.6 9.7 64 91-155 73-139 (215)
80 TIGR00563 rsmB ribosomal RNA s 98.6 7.1E-07 1.5E-11 91.8 13.7 77 77-153 220-298 (426)
81 PF02353 CMAS: Mycolic acid cy 98.6 1.4E-07 3.1E-12 91.8 8.2 66 91-156 58-124 (273)
82 TIGR02021 BchM-ChlM magnesium 98.6 3.9E-07 8.5E-12 84.8 10.5 64 93-156 53-116 (219)
83 PLN02781 Probable caffeoyl-CoA 98.6 5.1E-07 1.1E-11 85.8 11.2 83 79-161 52-137 (234)
84 PRK13944 protein-L-isoaspartat 98.6 4E-07 8.7E-12 84.5 10.1 64 92-155 69-135 (205)
85 PRK11207 tellurite resistance 98.5 2.2E-07 4.9E-12 85.7 8.0 62 93-155 28-89 (197)
86 PHA03411 putative methyltransf 98.5 1.5E-06 3.2E-11 84.8 13.9 75 74-156 45-121 (279)
87 COG2230 Cfa Cyclopropane fatty 98.5 3.3E-07 7.2E-12 89.5 8.8 69 91-159 68-137 (283)
88 PRK11783 rlmL 23S rRNA m(2)G24 98.5 2.8E-07 6.1E-12 100.4 8.8 66 91-156 185-295 (702)
89 PF08704 GCD14: tRNA methyltra 98.5 7.1E-07 1.5E-11 85.8 9.7 64 91-154 36-102 (247)
90 PRK00274 ksgA 16S ribosomal RN 98.5 3.4E-07 7.4E-12 88.7 7.7 61 92-156 39-99 (272)
91 TIGR00477 tehB tellurite resis 98.5 6.2E-07 1.3E-11 82.6 8.7 59 94-154 29-87 (195)
92 PLN02396 hexaprenyldihydroxybe 98.4 6.4E-07 1.4E-11 89.2 8.9 63 94-156 130-192 (322)
93 PRK04266 fibrillarin; Provisio 98.4 1.1E-05 2.4E-10 76.5 16.9 61 91-154 68-130 (226)
94 PRK13942 protein-L-isoaspartat 98.4 1.3E-06 2.8E-11 81.7 10.0 64 91-155 72-138 (212)
95 PRK15451 tRNA cmo(5)U34 methyl 98.4 8.5E-07 1.9E-11 84.5 8.7 63 93-155 54-120 (247)
96 PLN02476 O-methyltransferase 98.4 2.1E-06 4.5E-11 83.9 11.5 82 80-161 103-187 (278)
97 PLN02244 tocopherol O-methyltr 98.4 1E-06 2.2E-11 88.1 9.1 62 94-155 117-179 (340)
98 COG0030 KsgA Dimethyladenosine 98.4 1.7E-06 3.6E-11 83.7 9.8 77 77-156 12-88 (259)
99 PRK00312 pcm protein-L-isoaspa 98.4 1.8E-06 4E-11 80.0 9.8 65 90-155 73-137 (212)
100 COG4076 Predicted RNA methylas 98.4 4.1E-07 8.8E-12 83.9 5.2 59 97-156 34-92 (252)
101 TIGR02752 MenG_heptapren 2-hep 98.4 2E-06 4.3E-11 80.3 9.8 63 92-155 42-107 (231)
102 PRK04457 spermidine synthase; 98.4 3.7E-06 8E-11 81.3 11.9 68 93-160 64-133 (262)
103 PF01596 Methyltransf_3: O-met 98.4 1.2E-05 2.5E-10 75.4 14.6 75 87-161 37-114 (205)
104 COG1867 TRM1 N2,N2-dimethylgua 98.4 4.9E-06 1.1E-10 83.5 12.7 99 61-160 5-118 (380)
105 TIGR03840 TMPT_Se_Te thiopurin 98.3 3.9E-06 8.5E-11 78.8 11.2 41 94-134 33-73 (213)
106 PRK13943 protein-L-isoaspartat 98.3 2.3E-06 5.1E-11 85.2 10.0 64 92-156 77-143 (322)
107 COG2227 UbiG 2-polyprenyl-3-me 98.3 7.9E-07 1.7E-11 84.7 6.2 63 94-158 58-120 (243)
108 COG2226 UbiE Methylase involve 98.3 2.4E-06 5.2E-11 81.7 9.6 63 93-156 49-113 (238)
109 PRK07580 Mg-protoporphyrin IX 98.3 3.6E-06 7.9E-11 78.1 10.2 61 93-153 61-121 (230)
110 KOG2904 Predicted methyltransf 98.3 3.8E-06 8.3E-11 81.4 10.1 98 48-153 102-208 (328)
111 TIGR00740 methyltransferase, p 98.3 2.3E-06 4.9E-11 80.8 8.5 64 93-156 51-118 (239)
112 PRK13255 thiopurine S-methyltr 98.3 4.9E-06 1.1E-10 78.5 10.4 42 93-134 35-76 (218)
113 PRK11873 arsM arsenite S-adeno 98.3 1.1E-05 2.5E-10 77.4 12.9 64 91-155 73-139 (272)
114 KOG1499 Protein arginine N-met 98.3 1.1E-06 2.3E-11 87.6 5.7 63 93-156 58-121 (346)
115 PF07021 MetW: Methionine bios 98.3 3.2E-06 6.9E-11 78.3 8.4 67 87-161 5-72 (193)
116 PF01209 Ubie_methyltran: ubiE 98.2 2.6E-06 5.6E-11 81.2 7.7 64 92-156 44-110 (233)
117 KOG3420 Predicted RNA methylas 98.2 9.3E-07 2E-11 78.5 3.9 59 95-155 48-107 (185)
118 TIGR00755 ksgA dimethyladenosi 98.2 4.1E-06 8.8E-11 80.2 8.6 62 92-156 26-87 (253)
119 PF02384 N6_Mtase: N-6 DNA Met 98.2 2.1E-06 4.5E-11 84.1 6.4 78 76-153 27-114 (311)
120 PRK10742 putative methyltransf 98.2 9.7E-06 2.1E-10 77.9 10.7 71 90-160 81-161 (250)
121 PF05185 PRMT5: PRMT5 arginine 98.2 2.6E-06 5.5E-11 88.5 7.0 61 96-156 187-253 (448)
122 COG1041 Predicted DNA modifica 98.2 2.3E-06 5E-11 85.5 6.4 80 76-156 175-258 (347)
123 PF02390 Methyltransf_4: Putat 98.2 1.4E-05 3.1E-10 74.0 11.3 63 98-161 20-84 (195)
124 PRK00811 spermidine synthase; 98.2 4.5E-05 9.7E-10 74.6 15.3 66 94-159 75-146 (283)
125 PF01135 PCMT: Protein-L-isoas 98.2 5E-06 1.1E-10 78.0 8.2 65 91-156 68-135 (209)
126 PF03848 TehB: Tellurite resis 98.2 6.3E-06 1.4E-10 76.5 8.7 66 87-155 23-88 (192)
127 PTZ00146 fibrillarin; Provisio 98.2 8.1E-05 1.8E-09 73.3 16.8 61 92-155 129-192 (293)
128 KOG1270 Methyltransferases [Co 98.2 1.8E-06 3.8E-11 83.2 4.5 62 96-157 90-156 (282)
129 PRK11188 rrmJ 23S rRNA methylt 98.1 4.4E-05 9.5E-10 71.4 13.5 53 92-156 48-103 (209)
130 PLN02585 magnesium protoporphy 98.1 6.7E-06 1.5E-10 81.7 8.4 61 95-155 144-208 (315)
131 COG2518 Pcm Protein-L-isoaspar 98.1 9.2E-06 2E-10 76.2 8.7 67 90-157 67-133 (209)
132 COG2521 Predicted archaeal met 98.1 4.7E-06 1E-10 79.2 6.5 70 92-161 131-202 (287)
133 KOG0820 Ribosomal RNA adenine 98.1 9E-06 1.9E-10 78.8 8.4 90 65-154 28-117 (315)
134 PF13649 Methyltransf_25: Meth 98.1 4.7E-06 1E-10 68.1 5.6 56 99-156 1-61 (101)
135 PF02005 TRM: N2,N2-dimethylgu 98.1 1.7E-05 3.7E-10 80.7 10.7 85 74-158 18-116 (377)
136 PRK10258 biotin biosynthesis p 98.1 1.4E-05 3E-10 75.8 9.2 54 95-154 42-95 (251)
137 cd02440 AdoMet_MTases S-adenos 98.1 3.8E-05 8.1E-10 59.6 10.2 58 98-156 1-59 (107)
138 PLN02233 ubiquinone biosynthes 98.1 1.1E-05 2.5E-10 77.7 7.8 64 92-155 70-138 (261)
139 TIGR01444 fkbM_fam methyltrans 98.1 1.1E-05 2.3E-10 69.6 6.8 56 98-154 1-58 (143)
140 TIGR03438 probable methyltrans 98.1 1.8E-05 3.8E-10 77.9 9.2 70 89-158 57-129 (301)
141 PRK03612 spermidine synthase; 98.0 2.4E-05 5.1E-10 82.7 10.6 67 93-159 295-369 (521)
142 PRK00216 ubiE ubiquinone/menaq 98.0 2E-05 4.3E-10 73.0 8.9 64 93-156 49-115 (239)
143 PRK01581 speE spermidine synth 98.0 0.00019 4.2E-09 72.7 16.0 68 92-159 147-222 (374)
144 TIGR03587 Pse_Me-ase pseudamin 98.0 1E-05 2.3E-10 75.4 6.3 62 88-155 36-99 (204)
145 TIGR02716 C20_methyl_CrtF C-20 98.0 2.2E-05 4.7E-10 77.0 8.8 63 92-155 146-210 (306)
146 smart00828 PKS_MT Methyltransf 98.0 1.9E-05 4.1E-10 73.4 7.9 58 97-154 1-60 (224)
147 PLN02336 phosphoethanolamine N 98.0 2.1E-05 4.6E-10 81.6 8.9 61 93-155 264-325 (475)
148 PLN03075 nicotianamine synthas 98.0 4.6E-05 1E-09 75.1 10.7 62 95-156 123-189 (296)
149 PRK00050 16S rRNA m(4)C1402 me 97.9 3.5E-05 7.6E-10 76.0 8.5 66 93-161 17-85 (296)
150 TIGR00417 speE spermidine synt 97.9 0.00035 7.6E-09 67.6 15.3 66 94-159 71-141 (270)
151 PRK14103 trans-aconitate 2-met 97.9 2E-05 4.4E-10 75.1 6.6 56 93-156 27-84 (255)
152 PLN02366 spermidine synthase 97.9 0.00012 2.6E-09 72.6 12.2 67 93-159 89-160 (308)
153 PRK01683 trans-aconitate 2-met 97.9 3.4E-05 7.4E-10 73.4 8.1 58 93-156 29-88 (258)
154 PTZ00098 phosphoethanolamine N 97.9 3E-05 6.4E-10 74.9 7.5 60 92-154 49-109 (263)
155 TIGR01983 UbiG ubiquinone bios 97.9 5.3E-05 1.1E-09 70.2 8.8 62 95-157 45-106 (224)
156 COG0220 Predicted S-adenosylme 97.9 0.00014 3E-09 69.2 11.8 64 97-161 50-115 (227)
157 PRK15068 tRNA mo(5)U34 methylt 97.9 7.6E-05 1.6E-09 74.3 9.9 63 94-156 121-184 (322)
158 PRK11705 cyclopropane fatty ac 97.9 5.1E-05 1.1E-09 77.4 8.8 60 92-155 164-224 (383)
159 KOG1500 Protein arginine N-met 97.9 2.5E-05 5.4E-10 77.7 6.2 62 94-156 176-238 (517)
160 PRK05134 bifunctional 3-demeth 97.8 0.00011 2.4E-09 68.7 10.2 63 93-157 46-108 (233)
161 PF10294 Methyltransf_16: Puta 97.8 4.6E-05 9.9E-10 69.2 7.0 63 92-155 42-108 (173)
162 PLN02589 caffeoyl-CoA O-methyl 97.8 0.00016 3.5E-09 69.7 11.0 81 81-161 65-148 (247)
163 PF08241 Methyltransf_11: Meth 97.8 1.9E-05 4E-10 62.1 3.8 53 100-156 1-54 (95)
164 PRK11933 yebU rRNA (cytosine-C 97.7 0.00077 1.7E-08 70.6 15.2 65 92-157 110-177 (470)
165 PRK08317 hypothetical protein; 97.7 0.00017 3.7E-09 66.4 9.2 63 91-155 15-80 (241)
166 PRK04148 hypothetical protein; 97.7 6E-05 1.3E-09 66.2 5.7 54 95-156 16-70 (134)
167 TIGR00478 tly hemolysin TlyA f 97.7 0.00011 2.3E-09 70.0 7.7 55 78-132 55-113 (228)
168 TIGR01934 MenG_MenH_UbiE ubiqu 97.7 0.00017 3.7E-09 66.1 8.8 61 93-156 37-100 (223)
169 PLN02823 spermine synthase 97.7 0.00098 2.1E-08 67.0 14.3 64 95-158 103-171 (336)
170 TIGR00452 methyltransferase, p 97.7 0.00023 4.9E-09 70.9 9.6 63 93-155 119-182 (314)
171 PF00398 RrnaAD: Ribosomal RNA 97.6 0.00011 2.4E-09 70.8 7.0 63 91-156 26-88 (262)
172 PRK05785 hypothetical protein; 97.6 0.00013 2.9E-09 68.9 7.2 43 94-136 50-93 (226)
173 PRK06922 hypothetical protein; 97.6 0.00025 5.3E-09 76.6 9.7 64 91-156 414-479 (677)
174 PF04816 DUF633: Family of unk 97.6 0.00018 4E-09 67.4 7.7 61 99-159 1-63 (205)
175 KOG1271 Methyltransferases [Ge 97.6 0.0002 4.4E-09 66.1 7.6 63 93-155 64-129 (227)
176 KOG3191 Predicted N6-DNA-methy 97.6 0.00045 9.9E-09 63.7 9.7 62 96-159 44-108 (209)
177 TIGR02987 met_A_Alw26 type II 97.6 0.00013 2.8E-09 77.0 7.2 66 76-141 5-87 (524)
178 TIGR02081 metW methionine bios 97.6 0.00025 5.4E-09 64.9 7.8 60 89-156 7-67 (194)
179 PRK06202 hypothetical protein; 97.6 0.00023 5.1E-09 66.8 7.7 56 94-153 59-120 (232)
180 COG4122 Predicted O-methyltran 97.5 0.00076 1.6E-08 63.9 10.6 76 84-159 48-127 (219)
181 PF13489 Methyltransf_23: Meth 97.5 0.00032 6.9E-09 60.7 7.5 41 92-132 19-59 (161)
182 PLN02336 phosphoethanolamine N 97.5 0.00028 6.1E-09 73.2 8.4 58 94-154 36-93 (475)
183 PRK01544 bifunctional N5-gluta 97.5 0.00081 1.7E-08 71.0 11.7 65 95-160 347-413 (506)
184 PLN02490 MPBQ/MSBQ methyltrans 97.4 0.00047 1E-08 69.4 8.4 58 94-155 112-171 (340)
185 TIGR02072 BioC biotin biosynth 97.4 0.00054 1.2E-08 63.2 8.0 56 95-155 34-91 (240)
186 COG3897 Predicted methyltransf 97.4 0.0001 2.2E-09 68.6 3.0 58 94-153 78-136 (218)
187 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.4 0.0025 5.5E-08 62.4 12.7 71 90-161 80-153 (283)
188 PF01564 Spermine_synth: Sperm 97.3 0.0062 1.3E-07 58.5 14.5 67 94-160 75-146 (246)
189 TIGR00438 rrmJ cell division p 97.3 0.00029 6.2E-09 64.2 4.9 55 89-155 26-83 (188)
190 PF01555 N6_N4_Mtase: DNA meth 97.3 0.00037 8E-09 63.7 5.7 43 93-135 189-231 (231)
191 PRK11088 rrmA 23S rRNA methylt 97.3 0.00059 1.3E-08 65.9 6.5 55 95-155 85-144 (272)
192 PRK13256 thiopurine S-methyltr 97.2 0.00063 1.4E-08 64.8 5.7 63 94-156 42-115 (226)
193 PF05401 NodS: Nodulation prot 97.2 0.00059 1.3E-08 63.6 5.2 58 96-156 44-101 (201)
194 COG4106 Tam Trans-aconitate me 97.1 0.00081 1.7E-08 63.7 5.8 59 94-158 29-89 (257)
195 PF13679 Methyltransf_32: Meth 97.1 0.0013 2.8E-08 57.5 6.7 62 94-155 24-93 (141)
196 KOG1540 Ubiquinone biosynthesi 97.1 0.002 4.3E-08 62.4 8.4 65 92-156 97-171 (296)
197 smart00138 MeTrc Methyltransfe 97.1 0.0012 2.7E-08 63.8 7.0 43 95-137 99-152 (264)
198 PF05724 TPMT: Thiopurine S-me 97.1 0.00063 1.4E-08 64.3 4.6 64 93-156 35-109 (218)
199 KOG2915 tRNA(1-methyladenosine 97.1 0.0084 1.8E-07 58.6 12.1 64 91-154 101-167 (314)
200 PRK11524 putative methyltransf 97.1 0.0011 2.4E-08 64.7 6.2 51 88-138 200-251 (284)
201 PHA01634 hypothetical protein 97.0 0.0015 3.2E-08 57.2 6.1 51 95-145 28-79 (156)
202 KOG1663 O-methyltransferase [S 97.0 0.0055 1.2E-07 58.4 10.1 71 92-162 70-143 (237)
203 PRK13699 putative methylase; P 96.9 0.0019 4E-08 61.4 6.4 47 93-139 161-207 (227)
204 PF08242 Methyltransf_12: Meth 96.9 9.7E-05 2.1E-09 59.8 -2.1 45 100-144 1-47 (99)
205 COG0144 Sun tRNA and rRNA cyto 96.9 0.0035 7.7E-08 63.4 8.7 84 76-160 137-224 (355)
206 COG2384 Predicted SAM-dependen 96.8 0.003 6.6E-08 59.8 6.4 70 88-157 9-80 (226)
207 KOG1501 Arginine N-methyltrans 96.7 0.0024 5.2E-08 65.8 5.6 54 98-151 69-123 (636)
208 TIGR00006 S-adenosyl-methyltra 96.7 0.012 2.6E-07 58.5 10.3 77 82-161 8-86 (305)
209 PF05971 Methyltransf_10: Prot 96.6 0.0062 1.4E-07 60.3 7.6 56 96-151 103-161 (299)
210 COG4976 Predicted methyltransf 96.6 0.0014 3E-08 62.7 2.7 58 96-159 126-183 (287)
211 PF02527 GidB: rRNA small subu 96.4 0.019 4.1E-07 53.0 9.3 64 91-155 43-109 (184)
212 PF00145 DNA_methylase: C-5 cy 96.4 0.0057 1.2E-07 59.2 6.1 53 98-158 2-55 (335)
213 PF08003 Methyltransf_9: Prote 96.4 0.017 3.8E-07 57.3 9.0 50 94-143 114-164 (315)
214 PF11599 AviRa: RRNA methyltra 96.4 0.011 2.3E-07 56.1 7.1 63 79-141 32-101 (246)
215 KOG2899 Predicted methyltransf 96.3 0.0052 1.1E-07 59.2 4.8 55 85-139 47-104 (288)
216 KOG1541 Predicted protein carb 96.3 0.0066 1.4E-07 57.8 5.2 56 96-157 51-106 (270)
217 KOG1253 tRNA methyltransferase 96.2 0.0063 1.4E-07 63.5 5.4 65 94-158 108-175 (525)
218 COG0421 SpeE Spermidine syntha 96.1 0.038 8.2E-07 54.4 9.8 64 97-160 78-146 (282)
219 COG0357 GidB Predicted S-adeno 96.1 0.023 5.1E-07 53.8 8.0 61 96-157 68-130 (215)
220 cd00315 Cyt_C5_DNA_methylase C 96.0 0.011 2.3E-07 57.6 5.7 53 98-157 2-55 (275)
221 PF08123 DOT1: Histone methyla 96.0 0.016 3.6E-07 54.3 6.3 63 92-154 39-111 (205)
222 COG4262 Predicted spermidine s 95.8 0.093 2E-06 53.4 11.0 70 91-160 285-362 (508)
223 PRK11760 putative 23S rRNA C24 95.7 0.015 3.3E-07 58.6 5.2 57 93-157 209-265 (357)
224 KOG3010 Methyltransferase [Gen 95.6 0.015 3.3E-07 55.8 4.5 53 84-136 21-74 (261)
225 KOG4058 Uncharacterized conser 95.5 0.02 4.2E-07 51.6 4.7 62 95-156 72-134 (199)
226 PF00891 Methyltransf_2: O-met 95.4 0.027 6E-07 53.0 5.7 54 93-154 98-153 (241)
227 COG3963 Phospholipid N-methylt 95.2 0.083 1.8E-06 48.5 7.8 63 92-160 45-110 (194)
228 PF03291 Pox_MCEL: mRNA cappin 95.1 0.055 1.2E-06 54.4 6.9 60 95-154 62-131 (331)
229 PF01728 FtsJ: FtsJ-like methy 95.1 0.035 7.5E-07 50.0 5.0 47 95-153 23-72 (181)
230 PF01795 Methyltransf_5: MraW 95.0 0.078 1.7E-06 52.9 7.5 79 80-161 6-86 (310)
231 COG1189 Predicted rRNA methyla 94.7 0.1 2.2E-06 50.2 7.1 57 76-132 57-117 (245)
232 COG0270 Dcm Site-specific DNA 94.6 0.048 1.1E-06 54.4 5.2 57 97-159 4-61 (328)
233 PF12147 Methyltransf_20: Puta 94.6 0.2 4.2E-06 49.7 9.1 61 96-156 136-200 (311)
234 COG0286 HsdM Type I restrictio 94.5 0.081 1.7E-06 55.8 6.8 77 76-152 167-249 (489)
235 TIGR00675 dcm DNA-methyltransf 94.5 0.053 1.2E-06 53.8 5.1 52 99-157 1-53 (315)
236 PRK10458 DNA cytosine methylas 94.5 0.072 1.6E-06 55.9 6.3 58 96-156 88-146 (467)
237 PF07091 FmrO: Ribosomal RNA m 94.3 0.11 2.4E-06 50.3 6.5 57 91-147 101-159 (251)
238 PF04445 SAM_MT: Putative SAM- 94.3 0.064 1.4E-06 51.4 4.9 68 91-158 69-146 (234)
239 KOG2671 Putative RNA methylase 94.2 0.03 6.5E-07 56.4 2.4 41 91-131 204-244 (421)
240 KOG1661 Protein-L-isoaspartate 94.1 0.062 1.3E-06 50.9 4.3 65 92-156 79-156 (237)
241 TIGR03439 methyl_EasF probable 93.9 0.4 8.6E-06 48.1 9.9 74 88-161 69-149 (319)
242 PF02086 MethyltransfD12: D12 93.9 0.068 1.5E-06 50.5 4.2 41 95-135 20-60 (260)
243 KOG1122 tRNA and rRNA cytosine 93.7 0.091 2E-06 54.2 5.0 66 91-157 237-305 (460)
244 KOG2361 Predicted methyltransf 93.6 0.059 1.3E-06 51.9 3.2 54 98-153 74-131 (264)
245 KOG4300 Predicted methyltransf 93.4 0.12 2.6E-06 48.9 4.8 58 98-156 79-138 (252)
246 COG0863 DNA modification methy 92.9 0.22 4.8E-06 47.9 6.2 49 92-140 219-267 (302)
247 COG1743 Adenine-specific DNA m 91.6 0.12 2.7E-06 56.7 2.7 67 91-159 86-152 (875)
248 PF05050 Methyltransf_21: Meth 91.4 0.36 7.8E-06 41.7 5.0 52 101-152 1-60 (167)
249 PF13578 Methyltransf_24: Meth 91.0 0.23 5E-06 40.6 3.3 61 100-161 1-66 (106)
250 KOG1975 mRNA cap methyltransfe 90.8 0.28 6.1E-06 49.3 4.2 64 93-156 115-184 (389)
251 PF05219 DREV: DREV methyltran 90.8 0.85 1.8E-05 44.5 7.4 41 95-135 94-134 (265)
252 PF01269 Fibrillarin: Fibrilla 90.8 1.4 3.1E-05 42.1 8.6 61 92-155 70-133 (229)
253 COG0500 SmtA SAM-dependent met 90.7 0.82 1.8E-05 36.0 6.1 55 99-155 52-109 (257)
254 KOG3115 Methyltransferase-like 89.9 0.43 9.2E-06 45.2 4.3 65 96-161 61-134 (249)
255 KOG0822 Protein kinase inhibit 88.6 0.4 8.8E-06 50.9 3.5 60 97-157 369-434 (649)
256 PF03059 NAS: Nicotianamine sy 88.4 1.3 2.8E-05 43.6 6.7 61 97-157 122-187 (276)
257 PF01861 DUF43: Protein of unk 87.9 4 8.6E-05 39.5 9.5 61 95-158 44-106 (243)
258 COG0275 Predicted S-adenosylme 87.3 3.4 7.3E-05 41.3 8.8 68 92-161 20-90 (314)
259 PF09243 Rsm22: Mitochondrial 87.3 0.92 2E-05 44.2 5.0 43 95-137 33-78 (274)
260 KOG0024 Sorbitol dehydrogenase 87.1 1.1 2.3E-05 45.2 5.3 46 90-135 164-212 (354)
261 KOG2078 tRNA modification enzy 86.6 0.047 1E-06 56.3 -4.6 136 1-142 306-459 (495)
262 TIGR00497 hsdM type I restrict 85.4 2.9 6.3E-05 44.2 7.9 71 73-143 193-271 (501)
263 PTZ00357 methyltransferase; Pr 85.0 1.2 2.7E-05 48.9 4.8 59 98-156 703-775 (1072)
264 COG0293 FtsJ 23S rRNA methylas 84.9 0.99 2.1E-05 42.5 3.6 52 91-154 41-95 (205)
265 KOG2198 tRNA cytosine-5-methyl 84.4 2.1 4.5E-05 43.7 5.9 66 90-156 150-221 (375)
266 KOG2651 rRNA adenine N-6-methy 84.3 2.4 5.3E-05 43.6 6.3 45 91-135 149-194 (476)
267 COG1062 AdhC Zn-dependent alco 82.7 2.4 5.3E-05 43.0 5.6 64 91-161 181-251 (366)
268 COG1064 AdhP Zn-dependent alco 82.6 2.6 5.6E-05 42.7 5.8 46 91-136 162-209 (339)
269 PF03141 Methyltransf_29: Puta 82.3 3 6.4E-05 44.2 6.2 71 65-135 81-160 (506)
270 COG3392 Adenine-specific DNA m 81.5 1.1 2.5E-05 43.9 2.6 40 91-130 23-62 (330)
271 KOG2920 Predicted methyltransf 81.2 1.2 2.5E-05 43.9 2.7 40 92-131 113-153 (282)
272 COG1568 Predicted methyltransf 81.1 6.4 0.00014 39.1 7.6 62 96-159 153-216 (354)
273 KOG0022 Alcohol dehydrogenase, 80.0 3.2 7E-05 41.8 5.3 46 90-135 187-235 (375)
274 COG1889 NOP1 Fibrillarin-like 79.8 6.4 0.00014 37.4 6.9 62 92-156 73-136 (231)
275 PRK10611 chemotaxis methyltran 79.4 5.8 0.00012 39.2 6.9 41 97-137 117-167 (287)
276 PF05891 Methyltransf_PK: AdoM 78.4 3.1 6.7E-05 39.6 4.5 63 96-159 56-119 (218)
277 PRK09424 pntA NAD(P) transhydr 78.0 3.9 8.5E-05 43.6 5.6 42 94-135 163-206 (509)
278 COG1352 CheR Methylase of chem 77.8 5.8 0.00013 38.9 6.3 68 69-136 64-148 (268)
279 PF06962 rRNA_methylase: Putat 77.7 4.9 0.00011 35.7 5.2 36 119-154 1-36 (140)
280 KOG1201 Hydroxysteroid 17-beta 77.6 6.2 0.00014 39.3 6.5 56 95-153 37-95 (300)
281 PF01739 CheR: CheR methyltran 77.3 4.7 0.0001 37.5 5.3 41 96-136 32-83 (196)
282 PF03721 UDPG_MGDP_dh_N: UDP-g 75.5 5.2 0.00011 36.7 5.0 45 109-161 15-59 (185)
283 PLN02232 ubiquinone biosynthes 75.0 9.2 0.0002 33.9 6.4 35 121-155 1-37 (160)
284 COG1063 Tdh Threonine dehydrog 74.7 8.2 0.00018 38.8 6.6 43 93-135 166-211 (350)
285 PF07942 N2227: N2227-like pro 73.9 4.8 0.00011 39.5 4.6 45 96-142 57-101 (270)
286 PF07279 DUF1442: Protein of u 73.8 28 0.00062 33.2 9.5 65 97-161 43-114 (218)
287 KOG4589 Cell division protein 72.6 4.7 0.0001 37.9 3.9 36 92-127 66-104 (232)
288 KOG3924 Putative protein methy 68.7 3 6.5E-05 43.0 1.9 63 91-153 188-260 (419)
289 PF05148 Methyltransf_8: Hypot 68.5 9.5 0.0002 36.3 5.1 39 88-127 65-103 (219)
290 cd08237 ribitol-5-phosphate_DH 68.4 9.2 0.0002 37.8 5.3 43 93-135 161-207 (341)
291 KOG2793 Putative N2,N2-dimethy 68.3 7 0.00015 37.9 4.3 46 95-141 86-132 (248)
292 KOG1596 Fibrillarin and relate 68.3 14 0.00031 36.1 6.3 96 51-155 113-216 (317)
293 PF07757 AdoMet_MTase: Predict 66.7 5 0.00011 34.3 2.6 33 96-128 59-91 (112)
294 PRK00536 speE spermidine synth 66.2 14 0.0003 36.1 5.9 43 94-136 71-113 (262)
295 PF11899 DUF3419: Protein of u 65.5 16 0.00034 37.7 6.4 48 89-137 29-77 (380)
296 PF04989 CmcI: Cephalosporin h 64.3 15 0.00032 34.7 5.5 76 76-154 14-95 (206)
297 PF00107 ADH_zinc_N: Zinc-bind 64.1 8.4 0.00018 31.9 3.5 31 105-135 1-32 (130)
298 COG3129 Predicted SAM-dependen 63.0 9.7 0.00021 37.0 4.0 54 95-150 78-136 (292)
299 PF06080 DUF938: Protein of un 62.5 15 0.00033 34.6 5.2 62 93-154 22-86 (204)
300 KOG2940 Predicted methyltransf 60.9 11 0.00023 36.8 3.9 42 95-136 72-114 (325)
301 cd08283 FDH_like_1 Glutathione 60.4 18 0.00039 36.4 5.7 46 91-136 180-228 (386)
302 PRK09880 L-idonate 5-dehydroge 59.9 19 0.00042 35.4 5.8 43 93-135 167-212 (343)
303 KOG3987 Uncharacterized conser 59.8 4.4 9.5E-05 38.7 1.1 40 96-135 113-152 (288)
304 TIGR02822 adh_fam_2 zinc-bindi 58.7 20 0.00044 35.2 5.7 45 91-135 161-207 (329)
305 PF04378 RsmJ: Ribosomal RNA s 58.2 24 0.00052 34.2 5.9 70 88-161 51-120 (245)
306 PLN02740 Alcohol dehydrogenase 57.7 18 0.0004 36.2 5.3 45 91-135 194-241 (381)
307 KOG0821 Predicted ribosomal RN 57.6 41 0.00089 32.6 7.2 62 93-156 48-110 (326)
308 TIGR02818 adh_III_F_hyde S-(hy 56.7 22 0.00047 35.5 5.6 45 91-135 181-228 (368)
309 PRK07326 short chain dehydroge 56.0 44 0.00096 30.4 7.2 56 96-155 6-65 (237)
310 PLN02780 ketoreductase/ oxidor 53.9 47 0.001 32.7 7.4 60 95-154 52-114 (320)
311 TIGR03201 dearomat_had 6-hydro 53.5 27 0.00058 34.4 5.6 45 91-135 162-208 (349)
312 cd05188 MDR Medium chain reduc 53.0 42 0.00091 30.6 6.5 45 91-135 130-176 (271)
313 cd08254 hydroxyacyl_CoA_DH 6-h 52.9 32 0.00069 33.0 5.9 45 91-135 161-207 (338)
314 PRK07063 short chain dehydroge 51.8 68 0.0015 29.8 7.8 59 95-154 6-68 (260)
315 KOG1269 SAM-dependent methyltr 51.7 15 0.00032 37.6 3.5 59 91-149 106-165 (364)
316 PRK05867 short chain dehydroge 51.7 54 0.0012 30.4 7.1 57 95-154 8-68 (253)
317 PF04672 Methyltransf_19: S-ad 51.6 20 0.00044 35.1 4.3 61 97-158 70-135 (267)
318 PLN03154 putative allyl alcoho 51.1 34 0.00073 33.9 5.9 44 91-134 154-200 (348)
319 cd08281 liver_ADH_like1 Zinc-d 50.7 30 0.00065 34.4 5.5 45 91-135 187-234 (371)
320 PRK08945 putative oxoacyl-(acy 50.6 64 0.0014 29.7 7.4 58 94-153 10-71 (247)
321 TIGR00571 dam DNA adenine meth 50.1 17 0.00038 35.1 3.6 43 90-134 19-62 (266)
322 cd08230 glucose_DH Glucose deh 50.0 34 0.00073 33.8 5.7 42 93-134 170-216 (355)
323 TIGR03451 mycoS_dep_FDH mycoth 49.9 31 0.00066 34.1 5.4 45 91-135 172-219 (358)
324 cd08301 alcohol_DH_plants Plan 49.5 34 0.00074 33.9 5.7 45 91-135 183-230 (369)
325 PRK07231 fabG 3-ketoacyl-(acyl 49.4 53 0.0011 30.0 6.6 55 96-154 5-63 (251)
326 PRK07062 short chain dehydroge 49.2 70 0.0015 29.8 7.5 60 95-155 7-70 (265)
327 PRK07102 short chain dehydroge 49.2 56 0.0012 30.0 6.7 57 98-156 3-63 (243)
328 PRK06194 hypothetical protein; 48.3 59 0.0013 30.7 6.9 57 96-155 6-66 (287)
329 TIGR02825 B4_12hDH leukotriene 47.8 48 0.001 32.0 6.3 45 91-135 134-181 (325)
330 PRK07904 short chain dehydroge 47.3 63 0.0014 30.3 6.8 61 93-155 5-71 (253)
331 TIGR03366 HpnZ_proposed putati 47.0 35 0.00076 32.5 5.1 43 93-135 118-163 (280)
332 cd08239 THR_DH_like L-threonin 46.9 37 0.00079 33.0 5.3 44 92-135 160-206 (339)
333 PF02737 3HCDH_N: 3-hydroxyacy 46.1 49 0.0011 30.0 5.7 41 99-139 2-44 (180)
334 cd08300 alcohol_DH_class_III c 45.9 44 0.00095 33.2 5.8 45 91-135 182-229 (368)
335 COG2933 Predicted SAM-dependen 45.9 27 0.00059 34.6 4.1 58 91-156 207-264 (358)
336 PRK08339 short chain dehydroge 45.7 83 0.0018 29.6 7.4 59 95-155 7-69 (263)
337 PRK08862 short chain dehydroge 45.6 74 0.0016 29.5 7.0 57 95-153 4-63 (227)
338 PRK06172 short chain dehydroge 45.3 95 0.0021 28.6 7.7 57 95-154 6-66 (253)
339 cd08294 leukotriene_B4_DH_like 45.1 50 0.0011 31.6 5.9 45 91-135 139-186 (329)
340 cd08295 double_bond_reductase_ 44.5 62 0.0014 31.5 6.6 46 91-136 147-195 (338)
341 PRK07677 short chain dehydroge 44.5 1E+02 0.0023 28.4 7.8 55 97-154 2-60 (252)
342 PRK06914 short chain dehydroge 44.4 71 0.0015 30.0 6.7 59 96-155 3-65 (280)
343 cd00401 AdoHcyase S-adenosyl-L 44.1 45 0.00097 34.7 5.7 44 92-135 198-243 (413)
344 KOG3201 Uncharacterized conser 43.9 11 0.00025 34.7 1.1 49 95-143 29-80 (201)
345 KOG1098 Putative SAM-dependent 43.7 21 0.00046 39.1 3.2 37 91-127 40-79 (780)
346 PRK08213 gluconate 5-dehydroge 43.5 85 0.0019 29.1 7.1 58 95-155 11-72 (259)
347 PRK08703 short chain dehydroge 42.0 98 0.0021 28.3 7.1 57 95-153 5-65 (239)
348 PRK08251 short chain dehydroge 41.6 1.2E+02 0.0026 27.7 7.7 58 97-155 3-64 (248)
349 PRK12939 short chain dehydroge 41.3 95 0.0021 28.3 6.9 58 95-155 6-67 (250)
350 cd08293 PTGR2 Prostaglandin re 41.2 2.6E+02 0.0057 26.9 10.4 45 92-136 149-199 (345)
351 PRK07523 gluconate 5-dehydroge 41.0 93 0.002 28.7 6.9 57 95-154 9-69 (255)
352 PLN02827 Alcohol dehydrogenase 40.9 54 0.0012 32.9 5.6 45 91-135 189-236 (378)
353 PF02254 TrkA_N: TrkA-N domain 40.8 50 0.0011 26.8 4.5 47 102-156 2-52 (116)
354 cd08277 liver_alcohol_DH_like 40.5 57 0.0012 32.4 5.6 45 91-135 180-227 (365)
355 PRK09242 tropinone reductase; 40.4 1.5E+02 0.0032 27.4 8.1 60 95-155 8-71 (257)
356 PRK06197 short chain dehydroge 40.4 1E+02 0.0022 29.6 7.3 60 95-155 15-78 (306)
357 PRK05854 short chain dehydroge 40.3 1.1E+02 0.0024 29.7 7.6 59 95-154 13-75 (313)
358 PRK07819 3-hydroxybutyryl-CoA 40.2 64 0.0014 31.5 5.8 41 98-138 7-49 (286)
359 PRK12429 3-hydroxybutyrate deh 40.0 1E+02 0.0022 28.2 6.9 56 96-154 4-63 (258)
360 PF01234 NNMT_PNMT_TEMT: NNMT/ 39.5 24 0.00053 34.3 2.7 43 95-137 56-99 (256)
361 PRK05786 fabG 3-ketoacyl-(acyl 39.3 1.1E+02 0.0023 27.8 7.0 57 95-155 4-64 (238)
362 PRK07454 short chain dehydroge 39.0 1.6E+02 0.0034 26.9 8.0 58 95-155 5-66 (241)
363 TIGR01202 bchC 2-desacetyl-2-h 38.8 49 0.0011 32.1 4.8 42 94-135 143-187 (308)
364 PRK13394 3-hydroxybutyrate deh 38.8 83 0.0018 29.0 6.1 56 96-154 7-66 (262)
365 PRK10904 DNA adenine methylase 38.7 26 0.00057 34.0 2.9 45 88-134 20-64 (271)
366 PRK09186 flagellin modificatio 38.6 1.1E+02 0.0024 28.1 6.9 59 95-154 3-65 (256)
367 PRK07890 short chain dehydroge 38.6 1.3E+02 0.0029 27.5 7.5 57 95-154 4-64 (258)
368 PRK06720 hypothetical protein; 38.5 1.6E+02 0.0035 26.3 7.8 58 95-154 15-75 (169)
369 PRK06949 short chain dehydroge 38.2 1.5E+02 0.0032 27.3 7.7 57 95-154 8-68 (258)
370 PRK09072 short chain dehydroge 37.5 1.2E+02 0.0026 28.1 7.1 56 96-155 5-64 (263)
371 KOG1709 Guanidinoacetate methy 37.5 1.4E+02 0.003 29.0 7.3 67 93-161 99-166 (271)
372 PRK07814 short chain dehydroge 37.3 1.5E+02 0.0032 27.7 7.7 58 95-155 9-70 (263)
373 PRK08217 fabG 3-ketoacyl-(acyl 37.3 1.2E+02 0.0027 27.5 7.0 57 95-154 4-64 (253)
374 PRK06035 3-hydroxyacyl-CoA deh 37.0 79 0.0017 30.6 5.9 41 98-138 5-47 (291)
375 TIGR00561 pntA NAD(P) transhyd 37.0 64 0.0014 34.6 5.6 41 95-135 163-205 (511)
376 KOG2912 Predicted DNA methylas 37.0 71 0.0015 32.6 5.5 52 100-153 107-162 (419)
377 PRK07666 fabG 3-ketoacyl-(acyl 36.8 1.6E+02 0.0036 26.7 7.8 56 96-154 7-66 (239)
378 PRK06124 gluconate 5-dehydroge 36.7 1.6E+02 0.0035 27.0 7.8 58 95-155 10-71 (256)
379 COG5379 BtaA S-adenosylmethion 36.2 91 0.002 31.5 6.1 47 92-138 60-106 (414)
380 PRK07576 short chain dehydroge 35.9 1.5E+02 0.0032 27.8 7.4 57 95-154 8-68 (264)
381 PRK06138 short chain dehydroge 35.9 1.2E+02 0.0026 27.6 6.8 56 96-155 5-64 (252)
382 PLN02668 indole-3-acetate carb 35.8 24 0.00051 36.5 2.1 21 96-116 64-84 (386)
383 PRK06181 short chain dehydroge 35.1 1.3E+02 0.0027 27.9 6.8 56 97-155 2-61 (263)
384 PRK10309 galactitol-1-phosphat 35.1 72 0.0016 31.2 5.3 44 91-134 156-202 (347)
385 PRK07831 short chain dehydroge 35.0 1.4E+02 0.0031 27.6 7.2 62 94-155 15-80 (262)
386 PRK11730 fadB multifunctional 35.0 73 0.0016 35.4 5.9 42 97-138 314-357 (715)
387 PRK07478 short chain dehydroge 34.8 1.6E+02 0.0036 27.0 7.5 56 96-154 6-65 (254)
388 PF05575 V_cholerae_RfbT: Vibr 34.7 23 0.0005 32.9 1.6 65 77-141 60-127 (286)
389 PRK12826 3-ketoacyl-(acyl-carr 34.7 1.5E+02 0.0033 26.9 7.2 58 95-155 5-66 (251)
390 PLN02662 cinnamyl-alcohol dehy 34.6 85 0.0019 30.1 5.7 60 95-155 3-66 (322)
391 COG0677 WecC UDP-N-acetyl-D-ma 34.4 33 0.00071 35.8 2.8 50 105-162 16-69 (436)
392 cd08238 sorbose_phosphate_red 34.4 72 0.0016 32.4 5.3 45 92-136 172-222 (410)
393 PLN02253 xanthoxin dehydrogena 34.2 1.3E+02 0.0029 28.1 6.9 57 95-155 17-77 (280)
394 COG4017 Uncharacterized protei 34.0 31 0.00066 32.7 2.3 47 93-139 42-89 (254)
395 PRK06125 short chain dehydroge 33.8 1.8E+02 0.004 26.8 7.7 58 95-154 6-67 (259)
396 KOG3178 Hydroxyindole-O-methyl 33.7 51 0.0011 33.6 4.0 55 96-155 178-232 (342)
397 cd08245 CAD Cinnamyl alcohol d 33.4 95 0.0021 29.8 5.8 44 91-134 158-203 (330)
398 PRK05875 short chain dehydroge 33.4 1.6E+02 0.0034 27.5 7.2 60 95-155 6-69 (276)
399 PLN02989 cinnamyl-alcohol dehy 33.0 89 0.0019 30.2 5.6 61 95-156 4-68 (325)
400 KOG2352 Predicted spermine/spe 32.9 28 0.00061 36.9 2.1 66 96-162 296-363 (482)
401 KOG2360 Proliferation-associat 32.3 49 0.0011 34.3 3.6 63 92-155 210-275 (413)
402 COG2961 ComJ Protein involved 32.1 1.1E+02 0.0025 30.0 5.9 70 88-161 82-151 (279)
403 COG0604 Qor NADPH:quinone redu 32.0 1.2E+02 0.0027 30.1 6.5 67 91-161 138-207 (326)
404 PRK12384 sorbitol-6-phosphate 31.8 2.1E+02 0.0046 26.3 7.7 58 97-155 3-64 (259)
405 PRK05876 short chain dehydroge 31.8 1.7E+02 0.0037 27.8 7.2 57 95-154 5-65 (275)
406 PRK08293 3-hydroxybutyryl-CoA 31.6 1.1E+02 0.0023 29.6 5.8 40 98-137 5-46 (287)
407 PRK07066 3-hydroxybutyryl-CoA 31.3 1.1E+02 0.0024 30.7 6.0 41 97-137 8-50 (321)
408 PLN02178 cinnamyl-alcohol dehy 31.2 89 0.0019 31.5 5.4 36 94-129 177-214 (375)
409 PRK05808 3-hydroxybutyryl-CoA 30.7 1E+02 0.0023 29.5 5.6 38 98-135 5-44 (282)
410 PRK05866 short chain dehydroge 30.4 1.9E+02 0.0041 27.8 7.4 56 96-154 40-99 (293)
411 cd05278 FDH_like Formaldehyde 30.1 1.1E+02 0.0024 29.4 5.7 45 91-135 163-210 (347)
412 PLN03209 translocon at the inn 30.0 1.4E+02 0.003 32.6 6.8 62 93-155 77-149 (576)
413 PRK11154 fadJ multifunctional 29.7 1.1E+02 0.0023 34.1 6.0 43 97-139 310-355 (708)
414 PRK12829 short chain dehydroge 29.5 1.8E+02 0.004 26.6 6.9 56 94-154 9-68 (264)
415 TIGR03206 benzo_BadH 2-hydroxy 29.4 2.4E+02 0.0053 25.6 7.6 56 96-154 3-62 (250)
416 PRK08267 short chain dehydroge 29.3 1.3E+02 0.0029 27.8 5.9 53 98-155 3-59 (260)
417 PLN02586 probable cinnamyl alc 29.1 98 0.0021 30.8 5.2 38 93-130 181-220 (360)
418 KOG3045 Predicted RNA methylas 28.9 71 0.0015 31.7 3.9 30 94-126 179-208 (325)
419 PRK09260 3-hydroxybutyryl-CoA 28.7 1.2E+02 0.0026 29.2 5.7 40 98-137 3-44 (288)
420 PF02636 Methyltransf_28: Puta 28.5 49 0.0011 31.5 2.8 43 97-139 20-72 (252)
421 PRK09291 short chain dehydroge 28.4 2.3E+02 0.0051 25.9 7.4 57 97-156 3-63 (257)
422 cd08255 2-desacetyl-2-hydroxye 28.4 1.2E+02 0.0025 28.4 5.3 45 91-135 93-140 (277)
423 PRK06200 2,3-dihydroxy-2,3-dih 28.1 1.8E+02 0.0038 27.0 6.5 55 95-155 5-63 (263)
424 PRK09496 trkA potassium transp 28.0 99 0.0021 31.6 5.1 52 96-155 231-286 (453)
425 PRK08085 gluconate 5-dehydroge 27.6 2.1E+02 0.0045 26.3 6.9 57 95-154 8-68 (254)
426 PRK06139 short chain dehydroge 27.6 2.4E+02 0.0052 27.9 7.6 57 95-154 6-66 (330)
427 PRK07024 short chain dehydroge 27.5 1.4E+02 0.0031 27.6 5.8 55 97-155 3-61 (257)
428 PRK08265 short chain dehydroge 27.4 2.4E+02 0.0052 26.3 7.3 55 95-155 5-63 (261)
429 KOG2798 Putative trehalase [Ca 27.4 91 0.002 31.7 4.5 52 96-149 151-204 (369)
430 KOG0725 Reductases with broad 27.4 3.1E+02 0.0066 26.6 8.2 60 95-154 7-70 (270)
431 PRK09422 ethanol-active dehydr 27.2 1.3E+02 0.0029 28.9 5.7 44 91-134 158-204 (338)
432 PRK06196 oxidoreductase; Provi 27.1 1.6E+02 0.0036 28.4 6.3 54 95-155 25-82 (315)
433 PRK07533 enoyl-(acyl carrier p 26.9 2.2E+02 0.0047 26.6 7.0 57 95-154 9-70 (258)
434 KOG1207 Diacetyl reductase/L-x 26.9 2.2E+02 0.0047 26.9 6.5 56 95-155 6-64 (245)
435 PRK07067 sorbitol dehydrogenas 26.9 2.4E+02 0.0052 26.0 7.1 53 96-154 6-62 (257)
436 PRK00745 4-oxalocrotonate taut 26.6 62 0.0014 23.6 2.5 31 303-333 1-36 (62)
437 COG1004 Ugd Predicted UDP-gluc 26.5 1E+02 0.0022 32.2 4.8 24 112-135 18-41 (414)
438 PRK05717 oxidoreductase; Valid 26.4 1.7E+02 0.0037 27.0 6.1 55 95-155 9-67 (255)
439 cd08285 NADP_ADH NADP(H)-depen 26.2 1.5E+02 0.0032 29.0 5.8 45 91-135 162-209 (351)
440 cd08242 MDR_like Medium chain 26.1 1.4E+02 0.0031 28.4 5.6 43 91-135 151-197 (319)
441 PRK07035 short chain dehydroge 26.1 3.3E+02 0.0072 24.9 7.9 56 96-154 8-67 (252)
442 cd08296 CAD_like Cinnamyl alco 25.8 1.4E+02 0.0031 28.8 5.7 44 92-135 160-205 (333)
443 cd08261 Zn_ADH7 Alcohol dehydr 25.5 1.5E+02 0.0032 28.6 5.7 45 91-135 155-201 (337)
444 COG1565 Uncharacterized conser 25.4 1.5E+02 0.0033 30.5 5.7 44 97-140 79-132 (370)
445 PRK07774 short chain dehydroge 25.3 2.5E+02 0.0053 25.6 6.9 58 95-155 5-66 (250)
446 PRK06113 7-alpha-hydroxysteroi 25.2 2.7E+02 0.0059 25.6 7.2 58 95-155 10-71 (255)
447 PLN02514 cinnamyl-alcohol dehy 25.2 2E+02 0.0043 28.5 6.6 42 93-134 178-221 (357)
448 PRK08415 enoyl-(acyl carrier p 25.2 2.3E+02 0.005 26.9 6.9 58 95-155 4-66 (274)
449 COG0338 Dam Site-specific DNA 25.2 31 0.00067 34.0 0.8 44 88-132 18-61 (274)
450 cd08241 QOR1 Quinone oxidoredu 25.1 2.3E+02 0.0049 26.4 6.7 44 91-134 135-181 (323)
451 PRK07530 3-hydroxybutyryl-CoA 24.8 1.7E+02 0.0036 28.3 5.8 42 97-138 5-48 (292)
452 KOG0804 Cytoplasmic Zn-finger 24.6 78 0.0017 33.4 3.6 25 335-359 102-126 (493)
453 PRK06940 short chain dehydroge 24.6 2.3E+02 0.0051 26.7 6.8 55 97-155 3-60 (275)
454 TIGR01963 PHB_DH 3-hydroxybuty 24.6 3.1E+02 0.0067 24.9 7.4 55 98-155 3-61 (255)
455 PRK08277 D-mannonate oxidoredu 24.6 3.6E+02 0.0078 25.1 8.0 57 95-154 9-69 (278)
456 PRK07417 arogenate dehydrogena 24.4 1.5E+02 0.0032 28.6 5.4 37 99-135 3-41 (279)
457 cd08234 threonine_DH_like L-th 24.4 1.5E+02 0.0032 28.5 5.4 45 91-135 155-202 (334)
458 cd08246 crotonyl_coA_red croto 24.1 1.5E+02 0.0032 29.7 5.5 44 92-135 190-236 (393)
459 KOG0023 Alcohol dehydrogenase, 24.1 1.5E+02 0.0032 30.4 5.2 46 91-136 177-224 (360)
460 KOG2782 Putative SAM dependent 24.0 72 0.0016 30.9 2.9 46 93-138 41-88 (303)
461 TIGR02441 fa_ox_alpha_mit fatt 23.3 1.4E+02 0.0031 33.3 5.6 43 97-139 336-380 (737)
462 PRK08594 enoyl-(acyl carrier p 23.2 2.4E+02 0.0052 26.4 6.5 56 95-154 6-69 (257)
463 cd01075 NAD_bind_Leu_Phe_Val_D 23.2 2E+02 0.0043 26.5 5.8 40 95-136 27-70 (200)
464 COG1255 Uncharacterized protei 22.9 1.5E+02 0.0032 26.0 4.3 48 93-155 12-62 (129)
465 TIGR02819 fdhA_non_GSH formald 22.8 1.7E+02 0.0036 29.8 5.6 45 91-135 181-228 (393)
466 PF07576 BRAP2: BRCA1-associat 22.7 73 0.0016 27.1 2.5 23 337-359 43-65 (110)
467 PLN02986 cinnamyl-alcohol dehy 22.5 1.9E+02 0.0042 27.8 5.8 59 96-155 5-67 (322)
468 TIGR00518 alaDH alanine dehydr 22.5 1.7E+02 0.0036 29.8 5.5 40 96-135 167-208 (370)
469 PF01262 AlaDh_PNT_C: Alanine 22.1 1.8E+02 0.0038 25.8 5.0 40 97-136 21-62 (168)
470 PRK03562 glutathione-regulated 22.0 94 0.002 33.9 3.8 49 98-156 402-454 (621)
471 PRK10083 putative oxidoreducta 21.8 2E+02 0.0043 27.7 5.7 45 91-135 156-204 (339)
472 TIGR00936 ahcY adenosylhomocys 21.8 1.6E+02 0.0035 30.7 5.2 38 93-130 192-231 (406)
473 PRK09496 trkA potassium transp 21.8 1.5E+02 0.0032 30.3 5.0 32 104-135 6-41 (453)
474 cd08243 quinone_oxidoreductase 21.7 2.4E+02 0.0053 26.4 6.2 44 91-134 138-184 (320)
475 PRK06130 3-hydroxybutyryl-CoA 21.7 2.1E+02 0.0046 27.7 5.9 41 97-137 5-47 (311)
476 PRK10538 malonic semialdehyde 21.4 2E+02 0.0044 26.4 5.5 48 103-155 6-57 (248)
477 PLN02545 3-hydroxybutyryl-CoA 21.3 2.2E+02 0.0047 27.5 5.9 41 97-137 5-47 (295)
478 PRK07097 gluconate 5-dehydroge 21.2 3.6E+02 0.0077 25.0 7.2 58 95-155 9-70 (265)
479 PRK06603 enoyl-(acyl carrier p 21.2 2.8E+02 0.006 26.0 6.5 58 95-155 7-69 (260)
480 PRK08340 glucose-1-dehydrogena 21.1 2E+02 0.0044 26.6 5.5 53 98-154 2-58 (259)
481 PRK08303 short chain dehydroge 21.0 3.2E+02 0.0069 26.6 7.0 57 95-154 7-77 (305)
482 PRK07453 protochlorophyllide o 20.8 3.3E+02 0.0071 26.3 7.0 57 95-154 5-65 (322)
483 PRK05599 hypothetical protein; 20.6 3.4E+02 0.0075 25.0 6.9 56 98-155 2-60 (246)
484 KOG0919 C-5 cytosine-specific 20.6 67 0.0015 31.5 2.0 40 97-136 4-46 (338)
485 PRK05993 short chain dehydroge 20.5 2.4E+02 0.0052 26.5 5.9 51 96-155 4-58 (277)
486 PRK06505 enoyl-(acyl carrier p 20.5 3.3E+02 0.0071 25.8 6.9 57 95-154 6-67 (271)
487 PRK09135 pteridine reductase; 20.4 3.6E+02 0.0079 24.3 6.9 59 95-155 5-68 (249)
488 COG1748 LYS9 Saccharopine dehy 20.4 1.7E+02 0.0037 30.3 5.1 55 97-156 2-59 (389)
489 COG3805 DodA Aromatic ring-cle 20.4 1.2E+02 0.0025 25.9 3.1 17 341-357 45-62 (120)
490 PRK08589 short chain dehydroge 20.3 4.5E+02 0.0098 24.6 7.7 56 95-154 5-64 (272)
491 cd08232 idonate-5-DH L-idonate 20.2 2E+02 0.0043 27.7 5.4 40 95-134 165-207 (339)
492 TIGR02632 RhaD_aldol-ADH rhamn 20.1 2.9E+02 0.0062 30.5 7.1 60 95-155 413-476 (676)
493 PF01210 NAD_Gly3P_dh_N: NAD-d 20.1 2.1E+02 0.0045 25.1 5.0 39 99-137 2-42 (157)
494 PRK05653 fabG 3-ketoacyl-(acyl 20.0 3.7E+02 0.0081 24.0 6.9 56 96-154 5-64 (246)
495 PF06564 YhjQ: YhjQ protein; 20.0 1E+02 0.0022 29.9 3.2 27 104-130 11-43 (243)
No 1
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=100.00 E-value=2e-57 Score=450.67 Aligned_cols=293 Identities=48% Similarity=0.812 Sum_probs=244.9
Q ss_pred CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527 1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS 80 (380)
Q Consensus 1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~ 80 (380)
||||+|+.++.+|++..|+++++||+ +.+++|++|.+.+++.||.+++++|+|+....++++|+|++|.+|++.+||++
T Consensus 156 hIaHLNl~~e~lpfk~iI~~Vi~DK~-n~~ktvv~K~~~Itn~yR~~~~eviAGe~n~vtevre~~~~Fk~DfskVYWns 234 (495)
T KOG2078|consen 156 HIAHLNLRDEQLPFKRIIGQVIYDKN-NLIKTVVNKIGRITNRYRNFKLEVIAGERNLVTEVREGGERFKFDFSKVYWNS 234 (495)
T ss_pred eeEEeeccchhccHHHHHHHHhhccC-CCceEeeecccchhhhhcccCceEecCCCceEEEEecCCeeEEEecceEEeec
Confidence 99999999999999999999999997 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEeccHHHHHHH
Q 046527 81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDAREFIRQ 159 (380)
Q Consensus 81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r-i~~~~~Da~e~l~~ 159 (380)
||.+|+.|+...+++|++|+|+|||+|+|++++++++|+|+++|+||++++|++.|+++|++..+ ++++++|+.+|+++
T Consensus 235 RL~~Eherlsg~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~Flr~ 314 (495)
T KOG2078|consen 235 RLSHEHERLSGLFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDFLRQ 314 (495)
T ss_pred cchhHHHHHhhccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999976 99999999999974
Q ss_pred HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527 160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE 239 (380)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
-.. .+.. ++.+ ++.+. | .++.+
T Consensus 315 e~~---~~~~-----~I~~-------------------------~v~~k---l-----------------~k~~~----- 336 (495)
T KOG2078|consen 315 EPL---PYKR-----LIAD-------------------------EVLDK---L-----------------MKKIG----- 336 (495)
T ss_pred CCc---hhhh-----HHHH-------------------------HHhhh---h-----------------hhhhc-----
Confidence 210 0000 0000 00000 0 00000
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhh-cccCC-CCcEEEEEeccc---C
Q 046527 240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQR-QYWKG-SLPWIHCYCFIR---A 314 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~-~~~~~-~~p~iH~Y~F~~---~ 314 (380)
+.+. ..+..+.|-...|.+++|+|||||++|++||++|+|.+.+ +.|.. .+|+||||||++ +
T Consensus 337 ---------t~~~----~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d~~~lplvhcy~F~k~~~~ 403 (495)
T KOG2078|consen 337 ---------TVVN----KIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPIDKTPLPLVHCYCFSKLFCD 403 (495)
T ss_pred ---------cccc----ccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccccccceeEEEEEEeecccC
Confidence 0000 0001111122346679999999999999999999999987 67744 789999999999 6
Q ss_pred CCchHH-HHHHHHHHhcccCCCC---eEEEeccCCCCCceEEEEEEechhhhccc
Q 046527 315 NETEEL-IISEAESALNACIQDP---IFHKVRNVAPNKAMFCLSFRLPEACFSAK 365 (380)
Q Consensus 315 ~~~~~~-~~~~~~~~lg~~~~~~---~~~~VR~VaP~k~m~c~sF~lp~~~~~~~ 365 (380)
.++.++ +.+++...++..+++. .+|.||+|||||.|||++|+||..+|-++
T Consensus 404 ~~s~e~~V~ar~~~~~kv~~e~~~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~ 458 (495)
T KOG2078|consen 404 VSSTEDLVTARIVAALKVFAEDGALVSLHLVRKVAPNKEMYCASFQLPANVLVNE 458 (495)
T ss_pred CCchHHHHHHHHHhhcceeeccccceeeeeeeccCCCcccchhhhhcHHHHhhhh
Confidence 666666 8889999999888775 89999999999999999999999999443
No 2
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=100.00 E-value=1.1e-44 Score=357.93 Aligned_cols=242 Identities=40% Similarity=0.592 Sum_probs=222.2
Q ss_pred CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527 1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS 80 (380)
Q Consensus 1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~ 80 (380)
+||+++++++..+|+..|+++|++.+ +.+++|+.+.+.+.|++|.+.+++|+|+..+.+.++|+||.|++|+.++||++
T Consensus 95 dIai~~~~~e~~~~~~~i~~ai~~~~-~~vk~V~~k~~~v~G~~R~~~le~laGe~~teTihrE~G~~f~vD~~Kv~Fsp 173 (341)
T COG2520 95 DIAILSIPDELEPYKREIAEAILRVH-GKVKAVLLKEGPVAGEFRVPRLEVLAGERRTETIHRENGCRFKVDVAKVYFSP 173 (341)
T ss_pred cEEEEeCCcccchHHHHHHHHHHhhc-cCeeEEEEecCccCCeEeccceEEeecCCCceEEEecCCEEEEEchHHeEECC
Confidence 59999999998899999999999976 99999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
++++|+.|++..+.+|++|+|||||+|+|++++|++|+ .|+|+|+||+|++++++|+++|++.+++++++||+++++.+
T Consensus 174 rl~~ER~Rva~~v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~ 253 (341)
T COG2520 174 RLSTERARVAELVKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPE 253 (341)
T ss_pred CchHHHHHHHhhhcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhc
Confidence 99999999999999999999999999999999999998 59999999999999999999999999999999999998755
Q ss_pred HhcCCCCCCCCcchhhhhhccCCCCcccccccccccccccccccccccccCCCCccccccccccCcccccccCCCCCCcc
Q 046527 160 LMTAPAGEINSESDVFNLKACGNSGIQANKKTGIENVGLDVQDKEVAGNITSNSEGLQNYCRNADASVTATKRPSDGCLE 239 (380)
Q Consensus 160 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (380)
+.
T Consensus 254 ~~------------------------------------------------------------------------------ 255 (341)
T COG2520 254 LG------------------------------------------------------------------------------ 255 (341)
T ss_pred cc------------------------------------------------------------------------------
Confidence 31
Q ss_pred cCCCCCCCCCCCCCccccccCCCCCCCCCCceeeEEEecCCchHHHHHHHHHHhhhhcccCCCCcEEEEEecccCCCchH
Q 046527 240 ENGTTNSASGRKGKTSKRMKGSELPNTKTWEHVDHIIMNLPASALKFLDAFRGLIQRQYWKGSLPWIHCYCFIRANETEE 319 (380)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~vmNLP~~A~eFLd~f~gl~~~~~~~~~~p~iH~Y~F~~~~~~~~ 319 (380)
.+||||||||.+|.+||+....+.+.+ ++||+|.|+++++.++
T Consensus 256 -------------------------------~aDrIim~~p~~a~~fl~~A~~~~k~~------g~iHyy~~~~e~~~~~ 298 (341)
T COG2520 256 -------------------------------VADRIIMGLPKSAHEFLPLALELLKDG------GIIHYYEFVPEDDIEE 298 (341)
T ss_pred -------------------------------cCCEEEeCCCCcchhhHHHHHHHhhcC------cEEEEEeccchhhccc
Confidence 189999999999999999999998765 7999999999888533
Q ss_pred ---HHHHHHHHHhcccCCCCeEEEeccCCCCCceEEEEEEec
Q 046527 320 ---LIISEAESALNACIQDPIFHKVRNVAPNKAMFCLSFRLP 358 (380)
Q Consensus 320 ---~~~~~~~~~lg~~~~~~~~~~VR~VaP~k~m~c~sF~lp 358 (380)
..+..+....|...+....|.|++|||+.++||+++++.
T Consensus 299 ~~~~~i~~~~~~~~~~~~v~~~r~VksysP~v~hv~vd~~v~ 340 (341)
T COG2520 299 RPEKRIKSAARKGGYKVEVLKVRRVKSYSPGVYHVVVDLRVL 340 (341)
T ss_pred chHHHHHHHHhhccCcceEEEEEEecccCCCeeEEEEEEEec
Confidence 334455666666677788999999999999999999875
No 3
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=100.00 E-value=1.3e-41 Score=315.21 Aligned_cols=157 Identities=50% Similarity=0.831 Sum_probs=130.7
Q ss_pred CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecC
Q 046527 1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNS 80 (380)
Q Consensus 1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~ 80 (380)
||||++++++.++|++.|+++|++++ |.+++|++|.+.+.+++|++++++|+|++.+.++++|+|++|.+|+.++||++
T Consensus 8 ~Iaiv~~~~~~~~~~~~I~~~i~~~~-~~vktV~~k~~~v~g~~R~~~~~~LaG~~~~~t~~~E~G~~f~~D~~kvyfs~ 86 (200)
T PF02475_consen 8 DIAIVNLPEELEPYKELIAEAILEKN-PNVKTVYNKIGIVEGEFRTPDLEVLAGEPRTETIHKENGIRFKVDLSKVYFSP 86 (200)
T ss_dssp TEEEEEB-CCCCHHHHHHHHHHHHHC--T-SEEEEE-S-SBTTTTB--EEEEEES--SEEEEEETTEEEEEETTTS---G
T ss_pred cEEEEeCCcccchHHHHHHHHHHHhc-cCceEEEEecCcCCCCcccccEEEEeCCCceEEEEEeCCEEEEEccceEEEcc
Confidence 79999999999999999999999976 99999999999889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
++.+|+.|++..+.+|++|+|+|||+|+|++++|+ +++.|+|+|+||+|++++++|+++|++++++.++++|+++++.
T Consensus 87 rl~~Er~Ri~~~v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~ 166 (200)
T PF02475_consen 87 RLSTERRRIANLVKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLP 166 (200)
T ss_dssp GGHHHHHHHHTC--TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---
T ss_pred ccHHHHHHHHhcCCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcC
Confidence 99999999999999999999999999999999999 6679999999999999999999999999999999999998865
No 4
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.82 E-value=2.5e-18 Score=174.63 Aligned_cols=155 Identities=14% Similarity=0.187 Sum_probs=123.7
Q ss_pred EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCcccc--ccccceEEEecCC-ccEEEEEeCCeEEEEccCc--
Q 046527 2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANE--FRVPEFEILAGED-NMVTEVKQYGATFKLDYSL-- 75 (380)
Q Consensus 2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~--~r~~~~elLaG~~-~~~~~v~E~G~~F~id~~~-- 75 (380)
++++++.+. +..++..|.++|.. . ...++|+.+.+..... -......+++|+. +....++|+|++|.+|+..
T Consensus 123 ~~vvq~~~~~~~~~~~~i~~aL~~-~-~~~~~i~~r~~~~~r~~egl~~~~~~~~G~~~~~~~~v~E~g~~f~vdl~~g~ 200 (396)
T PRK15128 123 FLVLQLLSAGAEYQRAALISALQT-L-YPECAIYDRSDVAVRKKEGMELTQGPVTGELPPALLPIEEHGMKLLVDIQGGH 200 (396)
T ss_pred EEEEEECcHHHHHhHHHHHHHHHH-H-cCCcEEEEcCcchhHHhcCCCccceEEecCCCCccEEEEECCEEEEEeccccc
Confidence 678888885 45688999999998 4 3346888775433211 1223456889985 5567799999999999874
Q ss_pred ---eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEe
Q 046527 76 ---VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYN 150 (380)
Q Consensus 76 ---ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~ 150 (380)
+|+++| +.+..+..+.+|++|||+|||+|.|++.++..++ +|+++|+|+.++++|++|+++|+++ +++++++
T Consensus 201 ktG~flDqr---~~R~~~~~~~~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~ 277 (396)
T PRK15128 201 KTGYYLDQR---DSRLATRRYVENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVR 277 (396)
T ss_pred ccCcChhhH---HHHHHHHHhcCCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEE
Confidence 998888 4445555567799999999999999999887776 9999999999999999999999997 4699999
Q ss_pred ccHHHHHHHHh
Q 046527 151 MDAREFIRQLM 161 (380)
Q Consensus 151 ~Da~e~l~~l~ 161 (380)
+|+.++++.+.
T Consensus 278 ~D~~~~l~~~~ 288 (396)
T PRK15128 278 DDVFKLLRTYR 288 (396)
T ss_pred ccHHHHHHHHH
Confidence 99999987654
No 5
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.78 E-value=6.6e-18 Score=170.77 Aligned_cols=156 Identities=21% Similarity=0.329 Sum_probs=128.8
Q ss_pred EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEecCCc-cccccc-cceEEEec-CCccEEEEEeCCeEEEEccC---
Q 046527 2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRV-PEFEILAG-EDNMVTEVKQYGATFKLDYS--- 74 (380)
Q Consensus 2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~-~~~elLaG-~~~~~~~v~E~G~~F~id~~--- 74 (380)
++|+|+.+. .++.++.|.++|.+ .++.+.+|+.+.+.. .+..+. .....++| .......+.|+|.+|.++..
T Consensus 119 ~~vvq~~s~~~~~~~~~i~~~l~~-~~~~~~~v~e~s~~~~r~~~~~~~~~~~~~g~~~~~~~~i~E~g~kf~v~~~~g~ 197 (393)
T COG1092 119 YLVVQLYSAGIEIFKEAILEALAE-AFPAPKGVYEKSDVRLRRREGLKGRSQYLKGEEAPEEVVIEENGVKFLVDLVDGL 197 (393)
T ss_pred EEEEEecccccccchHHHHHHHHH-hhcccceeEeccchhhhhhhcccccccccccccCCCcEEEEeCCeEEEEecCCcc
Confidence 578888885 66778899999999 557799999886322 111121 24456778 46677888999999999987
Q ss_pred --ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEe
Q 046527 75 --LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYN 150 (380)
Q Consensus 75 --~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~ 150 (380)
.||.++| +.++.+.....|++|||+||+||+||+++|..|+ +|++||+|..++++|++|+++|+++ +++.+++
T Consensus 198 kTGfFlDqR---~~R~~l~~~~~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~ 274 (393)
T COG1092 198 KTGFFLDQR---DNRRALGELAAGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIV 274 (393)
T ss_pred cceeeHHhH---HHHHHHhhhccCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeeh
Confidence 4999999 5566665555599999999999999999999999 9999999999999999999999996 5789999
Q ss_pred ccHHHHHHHHh
Q 046527 151 MDAREFIRQLM 161 (380)
Q Consensus 151 ~Da~e~l~~l~ 161 (380)
+|+.++++.+.
T Consensus 275 ~Dvf~~l~~~~ 285 (393)
T COG1092 275 GDVFKWLRKAE 285 (393)
T ss_pred hhHHHHHHHHH
Confidence 99999998875
No 6
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.76 E-value=1.5e-16 Score=162.81 Aligned_cols=147 Identities=22% Similarity=0.362 Sum_probs=119.8
Q ss_pred CCcccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-
Q 046527 10 ELLPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL- 87 (380)
Q Consensus 10 ~~lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~- 87 (380)
..++....|++.|... +|.+++|+...+.. ...+...+.++++|...+.+.+ +|..|.+++..|||.|+..++.+
T Consensus 205 ~~~~~~~~~~~~l~~~-~~~v~~v~~~~~~~~~~~~~g~~~~~l~G~~~~~~~~--~~~~~~~~~~~F~Q~N~~~~~~l~ 281 (431)
T TIGR00479 205 EGFPHKEELALELQER-YPDVKSICQNINPEKTNVIFGEETEQIAGEGPIYEKS--GDLSFSLSARDFFQVNSGQNEKLV 281 (431)
T ss_pred CccccHHHHHHHHHHh-CCCceEEEEEeCCCCCCeeeCCceEEEeCCCeEEEEE--CCEEEEECCCceeecCHHHHHHHH
Confidence 3446677888888874 59999998765433 3344455678899998777777 89999999999999988777654
Q ss_pred H-HH--hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 88 R-II--SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 88 r-~i--~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
. +. ..+.++++|||+|||+|.+++.+|+.+.+|+|+|+++.+++.|++|++.|++.+ ++++++|+.+++..+
T Consensus 282 ~~~~~~l~~~~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~~n-v~~~~~d~~~~l~~~ 356 (431)
T TIGR00479 282 DRALEALELQGEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGIAN-VEFLAGTLETVLPKQ 356 (431)
T ss_pred HHHHHHhccCCCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCCCc-eEEEeCCHHHHHHHH
Confidence 2 22 234677899999999999999999988899999999999999999999999976 999999998876543
No 7
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.76 E-value=4.9e-17 Score=158.57 Aligned_cols=154 Identities=23% Similarity=0.379 Sum_probs=113.4
Q ss_pred EEEEEcCCC-CcccHHHHHHHHHhccCCCeeEEEEe-cC-Cc--cccc-cccceEEEecCCccEEEEEeCCeEEEEccC-
Q 046527 2 IAHLNIHDE-LLPFKDVIAKVIYDKNYPRIKTVVNK-VG-TI--ANEF-RVPEFEILAGEDNMVTEVKQYGATFKLDYS- 74 (380)
Q Consensus 2 Iahinl~~~-~lp~k~~I~~aLldk~~p~iktVv~k-~~-~i--~~~~-r~~~~elLaG~~~~~~~v~E~G~~F~id~~- 74 (380)
..++++..+ ...++..|.++|.... + ..++.. .. .+ ...+ .....++++|+.+...++.|+|++|.+++.
T Consensus 25 ~lvvq~~~~~~~~~~~~l~~~L~~l~-~--~~~~~~~~~~~~~~~~r~~~~~~~~~l~G~~~~~~~v~E~gl~f~v~l~~ 101 (286)
T PF10672_consen 25 VLVVQLYSEGMERFLDELREALEALI-P--PGIYEKKQGRSIVLRKREKEGAPSEVLYGEPPEFFTVEENGLKFRVDLTD 101 (286)
T ss_dssp EEEEEE-SHHHHCTHHHHHHHHHHHH-C--CCECEEEEGGGCCCCHHTTTT-EEEEEESS-SSEEEEEETTEEEEEESSS
T ss_pred EEEEEECCcChHHHHHHHHHHHHHHh-h--cceeeeccccceeehhhhccCCCceEEecCCCCceEEEECCEEEEEEcCC
Confidence 356666654 4577788888887632 2 122222 11 11 1111 123567899998877889999999999986
Q ss_pred ----ceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEE
Q 046527 75 ----LVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRA 148 (380)
Q Consensus 75 ----~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~ 148 (380)
.+|.++| +.++++....+|.+|||+||++|+||+.++..|+ +|++||.|..+++++++|+++|+++ +++++
T Consensus 102 gqktGlFlDqR---~nR~~v~~~~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~ 178 (286)
T PF10672_consen 102 GQKTGLFLDQR---ENRKWVRKYAKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRF 178 (286)
T ss_dssp SSSTSS-GGGH---HHHHHHHHHCTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEE
T ss_pred CCcceEcHHHH---hhHHHHHHHcCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEE
Confidence 4999999 6666666678899999999999999999999987 8999999999999999999999997 67999
Q ss_pred EeccHHHHHHHHh
Q 046527 149 YNMDAREFIRQLM 161 (380)
Q Consensus 149 ~~~Da~e~l~~l~ 161 (380)
+++|+.++++.+.
T Consensus 179 ~~~Dvf~~l~~~~ 191 (286)
T PF10672_consen 179 IQGDVFKFLKRLK 191 (286)
T ss_dssp EES-HHHHHHHHH
T ss_pred EecCHHHHHHHHh
Confidence 9999999998754
No 8
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=99.72 E-value=2e-16 Score=162.24 Aligned_cols=142 Identities=25% Similarity=0.421 Sum_probs=117.5
Q ss_pred cccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HH
Q 046527 12 LPFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RI 89 (380)
Q Consensus 12 lp~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~ 89 (380)
++......+.++. .+|.+.+++..++.. .+........+++|... ++| |..|.+++.+|||.|..+++.+ ..
T Consensus 211 ~~~~~~~~~~~~~-~~~~~~~i~~~i~~~~~~~i~g~~~~~~~~~~~----i~e-~~~~~~~~~sF~Q~N~~~~ekl~~~ 284 (432)
T COG2265 211 LPELEQALRELLE-AFPEIKGIVQNINRAKTNVIEGDEEITLYGLES----IRE-GVSFQISPRSFFQVNPAVAEKLYET 284 (432)
T ss_pred chhHHHHHHHHHH-hhhhcceEEEEecCCCCceEEcceeEEEecccc----ccc-ceEEEeCCCCceecCHHHHHHHHHH
Confidence 5567788888888 579999998877654 34445556677777652 233 8999999999999999999876 22
Q ss_pred H---hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 90 I---SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 90 i---~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
+ ....++++|||+|||+|.||+++|++..+|+|+|++++|++.|++|++.|++.| +++..+|+++++...
T Consensus 285 a~~~~~~~~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~ 357 (432)
T COG2265 285 ALEWLELAGGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAW 357 (432)
T ss_pred HHHHHhhcCCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhc
Confidence 2 334577899999999999999999999999999999999999999999999999 999999999997654
No 9
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.71 E-value=1.8e-15 Score=152.67 Aligned_cols=141 Identities=12% Similarity=0.200 Sum_probs=110.9
Q ss_pred ccHHHHHHHHHhccCCCeeEEEEecCCc-cccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HHH
Q 046527 13 PFKDVIAKVIYDKNYPRIKTVVNKVGTI-ANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RII 90 (380)
Q Consensus 13 p~k~~I~~aLldk~~p~iktVv~k~~~i-~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~i 90 (380)
+..+.+.+.+.+ .+|.+.+|+...+.. .+.+...+..+++|.+.+.+.+ +|+.|.+++.+|||.+....+.+ ..+
T Consensus 149 ~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~g~~~~~l~G~~~i~e~~--~g~~~~~~~~~F~Q~n~~~~~~l~~~~ 225 (374)
T TIGR02085 149 AQIRRALPWLIE-QLPQLEVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NDVPLVIRPQSFFQTNPKVAAQLYATA 225 (374)
T ss_pred hhHHHHHHHHHH-HCCCcEEEEEEECCCCCCceECceEEEEcCCCeeEEEE--CCEEEEECCCccccCCHHHHHHHHHHH
Confidence 444555565655 348888886544332 2333334556789988777777 89999999999999999888876 332
Q ss_pred hc---cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 91 SQ---FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 91 ~~---i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.. ..++.+|||+|||+|.|++.+|..+.+|+|+|+++.|++.|++|++.|++++ ++++++|+.+++
T Consensus 226 ~~~l~~~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~~-~~~~~~d~~~~~ 294 (374)
T TIGR02085 226 RQWVREIPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLDN-LSFAALDSAKFA 294 (374)
T ss_pred HHHHHhcCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHHH
Confidence 22 2356899999999999999999988899999999999999999999999974 999999998876
No 10
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.69 E-value=9.9e-16 Score=165.87 Aligned_cols=152 Identities=17% Similarity=0.200 Sum_probs=116.2
Q ss_pred CEEEEEcCCC--------CcccHHHHHHHHHhccC-CCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEE
Q 046527 1 HIAHLNIHDE--------LLPFKDVIAKVIYDKNY-PRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKL 71 (380)
Q Consensus 1 hIahinl~~~--------~lp~k~~I~~aLldk~~-p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~i 71 (380)
+++++++... +..++..|.++|.+ .+ ...++|+.|...... .......+ |+.+....+.|+|++|.+
T Consensus 437 ~~~vvq~~~~~~~~~~~~~~~~~~~i~~~l~~-~~~~~~~~i~~k~~~~~~--g~~~~~~~-g~~~~~~~v~e~g~~f~v 512 (702)
T PRK11783 437 DWVVVQEYAAPKTIDEEKARQRLFDALAATPE-VLGIPPNKVVLKTRERQK--GKNQYQKL-AEKGEFLEVTEYGAKLLV 512 (702)
T ss_pred CEEEEEECCCccccCHHHHHHHHHHHHHHHHH-HhCCCCCEEEEEeehhcc--Ccchhhhc-cCCCceEEEEECCEEEEE
Confidence 3577777765 45678889999877 21 234688887332111 11111222 665666779999999999
Q ss_pred ccCc-----eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-C
Q 046527 72 DYSL-----VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-N 144 (380)
Q Consensus 72 d~~~-----ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ 144 (380)
++.. +|+++| +.++.+..+.+|.+|||+|||+|.|++.+++.|+ +|+++|+|+.++++|++|+++|++. +
T Consensus 513 ~~~~~~~tG~flDqr---~~R~~~~~~~~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~ 589 (702)
T PRK11783 513 NLTDYLDTGLFLDHR---PTRRMIGQMAKGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGR 589 (702)
T ss_pred EcCCCCcceECHHHH---HHHHHHHHhcCCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCcc
Confidence 9764 888888 4455566666789999999999999999999887 7999999999999999999999997 6
Q ss_pred cEEEEeccHHHHHHH
Q 046527 145 YVRAYNMDAREFIRQ 159 (380)
Q Consensus 145 ri~~~~~Da~e~l~~ 159 (380)
+++++++|+.++++.
T Consensus 590 ~v~~i~~D~~~~l~~ 604 (702)
T PRK11783 590 QHRLIQADCLAWLKE 604 (702)
T ss_pred ceEEEEccHHHHHHH
Confidence 799999999988744
No 11
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.69 E-value=4.4e-15 Score=146.43 Aligned_cols=141 Identities=13% Similarity=0.191 Sum_probs=109.9
Q ss_pred ccHHHHHHHHHhccCCCeeEEEEecCC-ccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-HHH
Q 046527 13 PFKDVIAKVIYDKNYPRIKTVVNKVGT-IANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-RII 90 (380)
Q Consensus 13 p~k~~I~~aLldk~~p~iktVv~k~~~-i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-r~i 90 (380)
+....+.+.+..+ +|.+.+|...... ..+.....+...++|.+.+.+.+ .|+.|.+.+..|||.++.+++.+ +.+
T Consensus 89 ~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~g~~~~~l~g~~~~~~~~--~~~~~~~~~~sF~Q~n~~~~~~l~~~v 165 (315)
T PRK03522 89 ARLRRALPWLQAQ-LPQLKVISVNIQPVHMAILEGEEEIFLTEQQALPERF--NGVPLFIRPQSFFQTNPAVAAQLYATA 165 (315)
T ss_pred hhHHHHHHHHHHH-CCCCEEEEEEECCCCCCcccCCceEEEeCCCeEEEEE--CCEEEEECCCeeeecCHHHHHHHHHHH
Confidence 4444555556553 5888888654433 23333344567789988877777 89999999999999998877765 222
Q ss_pred -hc--cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 91 -SQ--FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 91 -~~--i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.. ..++.+|||+|||+|.+++.+|+.+++|+|+|+++.+++.|++|++.|++. +++++++|+.+++
T Consensus 166 ~~~l~~~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l~-~v~~~~~D~~~~~ 234 (315)
T PRK03522 166 RDWVRELPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGLT-NVQFQALDSTQFA 234 (315)
T ss_pred HHHHHhcCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEEcCHHHHH
Confidence 11 235789999999999999999999999999999999999999999999996 4999999998765
No 12
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.1e-15 Score=156.70 Aligned_cols=145 Identities=18% Similarity=0.289 Sum_probs=118.1
Q ss_pred ccHHHHHHHHHhccCCCeeE----EEEec-CCccccccccceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH
Q 046527 13 PFKDVIAKVIYDKNYPRIKT----VVNKV-GTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL 87 (380)
Q Consensus 13 p~k~~I~~aLldk~~p~ikt----Vv~k~-~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~ 87 (380)
..++.|.+.+.+ +|...+ .|+.. ..+...--..+++++.|+..+.+.+ .|++|+|++..|||+|...+|.+
T Consensus 296 e~~~ki~~~f~~--~~~~a~~l~~l~~q~~~~ts~~~~~~~~~l~~~~~~I~E~l--~~ltF~iSp~AFFQ~Nt~~aevL 371 (534)
T KOG2187|consen 296 ELKKKIEQRFLS--GPGFASGLRVLYLQESGHTSDGQEGKPLQLVGGDPYITESL--LGLTFRISPGAFFQTNTSAAEVL 371 (534)
T ss_pred HHHHHHHHHHhc--ccccccceeEEEEecccccccCCCCCCeEEEccccEEEeec--CCeEEEECCchhhccCcHHHHHH
Confidence 445666666666 465443 33322 2222223346889999999899999 99999999999999999999986
Q ss_pred ----HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527 88 ----RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT 162 (380)
Q Consensus 88 ----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~ 162 (380)
+....+..++.++|+|||+|.|++.+|++..+|+|||++|+|++.|++|++.||++| ++|++|-+++.+..+..
T Consensus 372 ys~i~e~~~l~~~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~NgisN-a~Fi~gqaE~~~~sl~~ 449 (534)
T KOG2187|consen 372 YSTIGEWAGLPADKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGISN-ATFIVGQAEDLFPSLLT 449 (534)
T ss_pred HHHHHHHhCCCCCcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCccc-eeeeecchhhccchhcc
Confidence 333567888999999999999999999999999999999999999999999999998 99999999988877753
No 13
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=99.58 E-value=1.2e-13 Score=139.09 Aligned_cols=136 Identities=18% Similarity=0.241 Sum_probs=104.2
Q ss_pred cHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCC--eEEEEccCceeecChHHHHHH-HHH
Q 046527 14 FKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYG--ATFKLDYSLVYWNSRLEHEHL-RII 90 (380)
Q Consensus 14 ~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G--~~F~id~~~ff~n~rl~tE~~-r~i 90 (380)
....+++.+.++ +|.+ ++..+ .....+++|.+.+.+.+.-+| +.|++++.+|||.|+.+++.+ ..+
T Consensus 131 ~~~~~~~~l~~~-~~~~-~i~~~---------~~~~~~~~G~~~i~e~l~~~~~~~~~~~~~~sF~Q~N~~~~e~l~~~v 199 (362)
T PRK05031 131 EWEQAAKALRDA-LFNV-HLIGR---------SRKQKIVLDQDYVDERLPVAGREFIYRQVENSFTQPNAAVNEKMLEWA 199 (362)
T ss_pred HHHHHHHHHHHH-CCCc-EEEec---------CCCcEEEcCCCEEEEEEecCCcEEEEEeCCCCeeccCHHHHHHHHHHH
Confidence 334566666663 4766 55221 112367889887766663235 899999999999999888876 333
Q ss_pred -hccC-CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 91 -SQFR-PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 91 -~~i~-~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+. .+.+|||+|||+|.|++++++...+|+|+|.++.|++.|++|++.|++++ ++++++|+.++++.+.
T Consensus 200 ~~~~~~~~~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~~-v~~~~~d~~~~l~~~~ 271 (362)
T PRK05031 200 LDATKGSKGDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGIDN-VQIIRMSAEEFTQAMN 271 (362)
T ss_pred HHHhhcCCCeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCCc-EEEEECCHHHHHHHHh
Confidence 2232 23579999999999999999887899999999999999999999999975 9999999999987653
No 14
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.51 E-value=5.3e-13 Score=137.45 Aligned_cols=93 Identities=23% Similarity=0.381 Sum_probs=82.3
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHh--ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIIS--QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~--~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN 140 (380)
+|+.|++++..|||.++..++.+ .++. ...++++|||+|||+|.+++.+|+.+.+|+|+|+|+.+++.|++|++.|
T Consensus 263 ~g~~f~~~~~~F~q~n~~~~e~l~~~vl~~l~~~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~ 342 (443)
T PRK13168 263 FGLRLAFSPRDFIQVNAQVNQKMVARALEWLDPQPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRN 342 (443)
T ss_pred CCeEEEECCCCeEEcCHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHc
Confidence 79999999999999999888765 2222 3457889999999999999999999899999999999999999999999
Q ss_pred CCCCcEEEEeccHHHHHH
Q 046527 141 KVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 141 ~l~~ri~~~~~Da~e~l~ 158 (380)
++.+ ++++++|+.+.+.
T Consensus 343 ~~~~-v~~~~~d~~~~l~ 359 (443)
T PRK13168 343 GLDN-VTFYHANLEEDFT 359 (443)
T ss_pred CCCc-eEEEEeChHHhhh
Confidence 9976 9999999987653
No 15
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=99.47 E-value=1.8e-13 Score=137.23 Aligned_cols=111 Identities=24% Similarity=0.440 Sum_probs=79.6
Q ss_pred EEEecCCccEEE--EEeCCeEEEEccCceeecChHHHHHH-HH-HhccCC-CCeEEEecCCcchhHHHHhhcCCEEEEEe
Q 046527 50 EILAGEDNMVTE--VKQYGATFKLDYSLVYWNSRLEHEHL-RI-ISQFRP-GETICDMFAGIGPFAIPAAQKGCIVFAND 124 (380)
Q Consensus 50 elLaG~~~~~~~--v~E~G~~F~id~~~ff~n~rl~tE~~-r~-i~~i~~-g~~VLDlfcGvG~fsl~aA~~g~~V~avD 124 (380)
..+.|.+..... +.+.++.|++++.+|||.|+.+++.+ .. +..+.. +..|||+|||+|.||+++|..+.+|+|||
T Consensus 146 ~~~~~~~~v~~~l~~~~~~~~~~~~~~sFfQvN~~~~~~l~~~~~~~l~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE 225 (352)
T PF05958_consen 146 KIVLGQDYVEERLEIQDKGLSFRISPGSFFQVNPEQNEKLYEQALEWLDLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVE 225 (352)
T ss_dssp EEECS-CEEECE--ECCCTEEEEEETTS---SBHHHHHHHHHHHHHHCTT-TTEEEEES-TTTCCHHHHHCCSSEEEEEE
T ss_pred EEEccCcEEeeEeeeeccceEEEECCCcCccCcHHHHHHHHHHHHHHhhcCCCcEEEEeecCCHHHHHHHhhCCeEEEee
Confidence 344454433222 33457999999999999999888876 22 222221 23799999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 125 LNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 125 lnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
+++.|++.|++|++.|+++| ++++++++.++...+.
T Consensus 226 ~~~~av~~A~~Na~~N~i~n-~~f~~~~~~~~~~~~~ 261 (352)
T PF05958_consen 226 IVEEAVEDARENAKLNGIDN-VEFIRGDAEDFAKALA 261 (352)
T ss_dssp S-HHHHHHHHHHHHHTT--S-EEEEE--SHHCCCHHC
T ss_pred CCHHHHHHHHHHHHHcCCCc-ceEEEeeccchhHHHH
Confidence 99999999999999999997 9999999998876654
No 16
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=99.46 E-value=1.6e-13 Score=132.84 Aligned_cols=145 Identities=25% Similarity=0.307 Sum_probs=108.9
Q ss_pred EEEEEcCCCCcccHHHHHHHHHhccCCCeeEE----EEecCCcc-ccccccceEEEecCCccEEEEEeCCeEEEEccCce
Q 046527 2 IAHLNIHDELLPFKDVIAKVIYDKNYPRIKTV----VNKVGTIA-NEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSLV 76 (380)
Q Consensus 2 Iahinl~~~~lp~k~~I~~aLldk~~p~iktV----v~k~~~i~-~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~f 76 (380)
+++++.+.-.-|-=+.|++.+.. +..++. +.+...+. ..-|++..++|+|+.. ++.++++|+.|.+|+..-
T Consensus 100 lvl~~~~sF~~~~W~~~~~e~w~---~va~sl~~~r~ar~~~vs~~~~R~~~v~~L~Gd~g-WV~~v~NGI~~~~d~t~~ 175 (351)
T KOG1227|consen 100 LVLFPVNSFNHPIWQKIFQELWS---VVAKSLGVSRLARNRLVSHLARRPPNVQPLYGDLG-WVKHVQNGITQIWDPTKT 175 (351)
T ss_pred EEEEeccccCChhHHHHHHHHHH---hhhhccchhhhhhccccCccccCCCcccccccccc-ceeehhcCeEEEechhhh
Confidence 45555555444444667777766 222222 22333332 2257889999999875 556667899999999987
Q ss_pred eecChHHHHHHHHHhccCCCCeEEEecCCcchhHH-HHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEe
Q 046527 77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAI-PAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYN 150 (380)
Q Consensus 77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl-~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~ 150 (380)
+|...-.+|..|+......|++|+|||||.|.|++ ++...|+ .|+|.|.||.+++.+++|++.|++.+++.++.
T Consensus 176 MFS~GN~~EK~Rv~~~sc~~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~ 251 (351)
T KOG1227|consen 176 MFSRGNIKEKKRVLNTSCDGEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITE 251 (351)
T ss_pred hhhcCcHHHHHHhhhcccccchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhh
Confidence 77777778999998888889999999999999999 6666776 99999999999999999999998776554443
No 17
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=99.43 E-value=1.6e-12 Score=130.44 Aligned_cols=111 Identities=19% Similarity=0.252 Sum_probs=89.9
Q ss_pred eEEEecCCccEEEEEeCC--eEEEEccCceeecChHHHHHH-HHH-hccC-CCCeEEEecCCcchhHHHHhhcCCEEEEE
Q 046527 49 FEILAGEDNMVTEVKQYG--ATFKLDYSLVYWNSRLEHEHL-RII-SQFR-PGETICDMFAGIGPFAIPAAQKGCIVFAN 123 (380)
Q Consensus 49 ~elLaG~~~~~~~v~E~G--~~F~id~~~ff~n~rl~tE~~-r~i-~~i~-~g~~VLDlfcGvG~fsl~aA~~g~~V~av 123 (380)
..+++|.+.+.+.+.-+| +.|++++..|||.|+.+.+.+ ..+ .... .+.+|||+|||+|.|++++++....|+|+
T Consensus 146 ~~~l~G~~~~~~~~~~~~~~~~~~~~~~~F~Q~N~~~~~~l~~~v~~~~~~~~~~vlDl~~G~G~~sl~la~~~~~v~~v 225 (353)
T TIGR02143 146 KKIVLDQDYVDETLPVAGREFIYRQVENSFTQPNAAVNIKMLEWACEVTQGSKGDLLELYCGNGNFSLALAQNFRRVLAT 225 (353)
T ss_pred cEEEcCCCEEEEEEecCCeEEEEEECCCCcccCCHHHHHHHHHHHHHHhhcCCCcEEEEeccccHHHHHHHHhCCEEEEE
Confidence 456778776555442245 889999999999998777765 333 2222 23479999999999999999888899999
Q ss_pred eCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 124 DLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 124 Dlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
|+++.+++.|++|++.|++++ ++++++|+.+++...
T Consensus 226 E~~~~av~~a~~n~~~~~~~~-v~~~~~d~~~~~~~~ 261 (353)
T TIGR02143 226 EIAKPSVNAAQYNIAANNIDN-VQIIRMSAEEFTQAM 261 (353)
T ss_pred ECCHHHHHHHHHHHHHcCCCc-EEEEEcCHHHHHHHH
Confidence 999999999999999999986 999999999988653
No 18
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=99.39 E-value=5.7e-12 Score=127.82 Aligned_cols=61 Identities=31% Similarity=0.459 Sum_probs=55.2
Q ss_pred CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
+.+|||+|||+|.+++.+|.... .|+++|+|+.+++.+++|+++|++.+ ++++++|+.+++
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~~-~~v~~~Da~~~l 120 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLEN-EKVFNKDANALL 120 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCc-eEEEhhhHHHHH
Confidence 46999999999999999987533 89999999999999999999999986 789999998775
No 19
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=99.39 E-value=3.4e-12 Score=129.06 Aligned_cols=96 Identities=30% Similarity=0.399 Sum_probs=76.8
Q ss_pred EeCCeEEEEc-cCceeecChHHHHHHHH------HhccCCC---CeEEEecCCcchhHHHHhhc--CC-EEEEEeCCHHH
Q 046527 63 KQYGATFKLD-YSLVYWNSRLEHEHLRI------ISQFRPG---ETICDMFAGIGPFAIPAAQK--GC-IVFANDLNPDS 129 (380)
Q Consensus 63 ~E~G~~F~id-~~~ff~n~rl~tE~~r~------i~~i~~g---~~VLDlfcGvG~fsl~aA~~--g~-~V~avDlnp~A 129 (380)
+|+..+|.+. ...+|+|++....|... .....++ -+|||+|||+|.+|+.+++. |+ +|+++|+||.|
T Consensus 2 ~EG~~~i~~p~~~~vFYNP~~~~nRDlsv~~~~~~~~~~~~~~~~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~A 81 (374)
T TIGR00308 2 KEGKAEILVPKKETVFYNPRMQFNRDLSVTCIQAFDNLYGKECYINIADALSASGIRAIRYAHEIEGVREVFANDINPKA 81 (374)
T ss_pred ccceEEEEecCCCCcccCchhhccccHHHHHHHHHHHhhCCcCCCEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHH
Confidence 5677777774 24689998877665421 1222344 38999999999999999987 44 99999999999
Q ss_pred HHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 130 VHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 130 ie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
++.+++|+++|++.+ ++++++|+..++..
T Consensus 82 v~~i~~N~~~N~~~~-~~v~~~Da~~~l~~ 110 (374)
T TIGR00308 82 VESIKNNVEYNSVEN-IEVPNEDAANVLRY 110 (374)
T ss_pred HHHHHHHHHHhCCCc-EEEEchhHHHHHHH
Confidence 999999999999985 89999999988754
No 20
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.35 E-value=8.8e-12 Score=103.82 Aligned_cols=62 Identities=29% Similarity=0.449 Sum_probs=58.8
Q ss_pred CCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
|.+|||+|||+|.+++.+++.+ .+++++|+||.++++++.|+..+++.++++++++|+.+..
T Consensus 1 g~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~ 63 (117)
T PF13659_consen 1 GDRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLP 63 (117)
T ss_dssp TEEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHH
T ss_pred CCEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhch
Confidence 5689999999999999999998 7999999999999999999999999888999999998875
No 21
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.32 E-value=7.1e-11 Score=109.84 Aligned_cols=98 Identities=19% Similarity=0.229 Sum_probs=71.4
Q ss_pred ceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH-----HHHhccCCCCeEEEecCCcchhHHHHhhcC-CEEE
Q 046527 48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL-----RIISQFRPGETICDMFAGIGPFAIPAAQKG-CIVF 121 (380)
Q Consensus 48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~-----r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~ 121 (380)
.++++.|.- .|.++.+.....+ |..++.+ .++....++.+|||+|||+|.+++.++.++ .+|+
T Consensus 12 ~mrIi~g~~--------~g~~l~~~~~~~~---Rp~~d~v~e~l~~~l~~~~~~~~vLDl~~GsG~l~l~~lsr~a~~V~ 80 (199)
T PRK10909 12 QIRIIGGQW--------RGRKLPVPDSPGL---RPTTDRVRETLFNWLAPVIVDARCLDCFAGSGALGLEALSRYAAGAT 80 (199)
T ss_pred CEEEEeecc--------CCCEeCCCCCCCc---CcCCHHHHHHHHHHHhhhcCCCEEEEcCCCccHHHHHHHHcCCCEEE
Confidence 477777752 4555554333222 3333443 222233567899999999999999765554 5999
Q ss_pred EEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 122 ANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 122 avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
++|+++++++.+++|++.+++.+ ++++++|+.+++
T Consensus 81 ~vE~~~~a~~~a~~Nl~~~~~~~-v~~~~~D~~~~l 115 (199)
T PRK10909 81 LLEMDRAVAQQLIKNLATLKAGN-ARVVNTNALSFL 115 (199)
T ss_pred EEECCHHHHHHHHHHHHHhCCCc-EEEEEchHHHHH
Confidence 99999999999999999999875 999999998765
No 22
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=1.2e-10 Score=106.95 Aligned_cols=62 Identities=32% Similarity=0.397 Sum_probs=55.0
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.-.|.+|+|+|||+|.+++.++..|+ +|+|+|++|++++.+++|+.. +.+.+.++.+|+.++
T Consensus 43 ~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~ 105 (198)
T COG2263 43 DLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDF 105 (198)
T ss_pred CcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhc
Confidence 34678999999999999999999986 999999999999999999988 344599999998764
No 23
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.25 E-value=3e-11 Score=115.61 Aligned_cols=68 Identities=18% Similarity=0.342 Sum_probs=61.8
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
......+|||+|||+|.+++.+|++ . ++|++||+++++++.|++|+++|+++++++++++|+.++.+.
T Consensus 41 ~~~~~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~ 110 (248)
T COG4123 41 PVPKKGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKA 110 (248)
T ss_pred ccccCCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhc
Confidence 3445789999999999999999988 4 699999999999999999999999999999999999988644
No 24
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.22 E-value=1.8e-10 Score=106.10 Aligned_cols=68 Identities=22% Similarity=0.273 Sum_probs=62.3
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
.-+|.+|||+|||+|.+++.++.+|+ .|++||.++.+++.+++|++.|++.++++++++|+.+++..+
T Consensus 47 ~~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~ 115 (189)
T TIGR00095 47 EIQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFL 115 (189)
T ss_pred hcCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHh
Confidence 34689999999999999999999987 899999999999999999999999877999999998887554
No 25
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.17 E-value=2.9e-10 Score=102.41 Aligned_cols=86 Identities=24% Similarity=0.277 Sum_probs=65.8
Q ss_pred eEEEEccCceeecCh-HHHHHH-HHHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCC
Q 046527 67 ATFKLDYSLVYWNSR-LEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKV 142 (380)
Q Consensus 67 ~~F~id~~~ff~n~r-l~tE~~-r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l 142 (380)
++|...++-|-+..- ..++.+ ..+... ++.+|||+|||+|.+++.+++.+. +|+++|+|+.|++.+++|++.|++
T Consensus 2 ~~~~~~~gvFs~~~~d~~t~lL~~~l~~~-~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~ 80 (170)
T PF05175_consen 2 LEFITHPGVFSPPRLDAGTRLLLDNLPKH-KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGL 80 (170)
T ss_dssp EEEEEETTSTTTTSHHHHHHHHHHHHHHH-TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTC
T ss_pred EEEEECCCeeCCCCCCHHHHHHHHHHhhc-cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCc
Confidence 356666665532221 233333 222222 678999999999999999999865 699999999999999999999999
Q ss_pred CCcEEEEeccHH
Q 046527 143 DNYVRAYNMDAR 154 (380)
Q Consensus 143 ~~ri~~~~~Da~ 154 (380)
++ ++++..|..
T Consensus 81 ~~-v~~~~~d~~ 91 (170)
T PF05175_consen 81 EN-VEVVQSDLF 91 (170)
T ss_dssp TT-EEEEESSTT
T ss_pred cc-ccccccccc
Confidence 98 999988864
No 26
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.12 E-value=3.6e-10 Score=110.31 Aligned_cols=89 Identities=24% Similarity=0.289 Sum_probs=71.2
Q ss_pred CCeEEEEccCceeecChHHHHH-H-HHHh-cc--CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEH-L-RIIS-QF--RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~-~-r~i~-~i--~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na 137 (380)
.|..|.+++..|+ +|..++. + ..+. .+ .++.+|||+|||+|.+++.+++. +.+|+|+|+|+.+++.|++|+
T Consensus 88 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~ 165 (284)
T TIGR03533 88 AGLEFYVDERVLI--PRSPIAELIEDGFAPWLEPEPVKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINI 165 (284)
T ss_pred cCcEEEECCCCcc--CCCchHHHHHHHHHHHhccCCCCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6889999998766 4433333 2 2222 12 34579999999999999999986 359999999999999999999
Q ss_pred HHcCCCCcEEEEeccHHH
Q 046527 138 KVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 138 ~lN~l~~ri~~~~~Da~e 155 (380)
+.|++.++++++++|+.+
T Consensus 166 ~~~~~~~~i~~~~~D~~~ 183 (284)
T TIGR03533 166 ERHGLEDRVTLIQSDLFA 183 (284)
T ss_pred HHcCCCCcEEEEECchhh
Confidence 999998789999999854
No 27
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.12 E-value=4.5e-09 Score=107.52 Aligned_cols=87 Identities=23% Similarity=0.341 Sum_probs=72.7
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN 140 (380)
.|..|.+++..+. +|..+|.+ .++..+.++.+|||+|||+|.+++.+++. +++|+|+|+|+.+++.|++|++.+
T Consensus 221 ~G~~f~V~p~vLI--PRpeTE~LVe~aL~~l~~~~rVLDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~ 298 (423)
T PRK14966 221 YGRRFAVNPNVLI--PRPETEHLVEAVLARLPENGRVWDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADL 298 (423)
T ss_pred cCcEEEeCCCccC--CCccHHHHHHHhhhccCCCCEEEEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 7889999998755 77777765 23345667789999999999999998865 469999999999999999999988
Q ss_pred CCCCcEEEEeccHHH
Q 046527 141 KVDNYVRAYNMDARE 155 (380)
Q Consensus 141 ~l~~ri~~~~~Da~e 155 (380)
+. +++++++|+.+
T Consensus 299 g~--rV~fi~gDl~e 311 (423)
T PRK14966 299 GA--RVEFAHGSWFD 311 (423)
T ss_pred CC--cEEEEEcchhc
Confidence 75 58999998754
No 28
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.12 E-value=6.6e-10 Score=102.06 Aligned_cols=68 Identities=25% Similarity=0.411 Sum_probs=59.3
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
-+|.+|||||||+|.+|+.++.+|+ +|+.||.|+.++..+++|++..++.++++++++|+..++.++.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~ 109 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLA 109 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHH
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhc
Confidence 5789999999999999999999987 9999999999999999999999999889999999999987764
No 29
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=99.11 E-value=5.4e-10 Score=102.77 Aligned_cols=68 Identities=28% Similarity=0.373 Sum_probs=62.7
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
.-.|.++||+|||+|++++.|+.+|+ +|+.||.|..++..+++|++..++..+++++.+|+..+++++
T Consensus 41 ~i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~ 109 (187)
T COG0742 41 EIEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQL 109 (187)
T ss_pred ccCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhc
Confidence 36789999999999999999999987 999999999999999999999998888999999999776655
No 30
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.11 E-value=5.4e-10 Score=107.18 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=67.8
Q ss_pred CCeEEEEccCceeecChHHHHHH-HHH-hcc---CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL-RII-SQF---RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~-r~i-~~i---~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na 137 (380)
.|..|.+++..|+ |+..++.+ +.+ ..+ ..+.+|||+|||+|.+++.+++. +.+|+++|+|+.+++.|++|+
T Consensus 53 ~g~~~~v~~~vf~--pr~~Te~Lv~~~l~~~~~~~~~~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~ 130 (251)
T TIGR03704 53 CGLRIAVDPGVFV--PRRRTEFLVDEAAALARPRSGTLVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNL 130 (251)
T ss_pred cCeEEEECCCCcC--CCccHHHHHHHHHHhhcccCCCCEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 6889999998765 56566654 222 222 23458999999999999999875 459999999999999999999
Q ss_pred HHcCCCCcEEEEeccHHHHH
Q 046527 138 KVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 138 ~lN~l~~ri~~~~~Da~e~l 157 (380)
+.|++ +++++|+.+.+
T Consensus 131 ~~~~~----~~~~~D~~~~l 146 (251)
T TIGR03704 131 ADAGG----TVHEGDLYDAL 146 (251)
T ss_pred HHcCC----EEEEeechhhc
Confidence 98873 67888886543
No 31
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.09 E-value=3.6e-10 Score=110.25 Aligned_cols=87 Identities=29% Similarity=0.321 Sum_probs=68.1
Q ss_pred CCeEEEEccCceeecChHHHHHHH-H-HhccCCCC-eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHLR-I-ISQFRPGE-TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~r-~-i~~i~~g~-~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~l 139 (380)
.|..|.++... +.+|..||.+- . +....... +|||+|||+|.+++.+|+.+. +|+|+|+||+|++.|++|++.
T Consensus 79 ~gl~~~v~~~v--liPr~dTe~Lve~~l~~~~~~~~~ilDlGTGSG~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~ 156 (280)
T COG2890 79 GGLRFKVDEGV--LIPRPDTELLVEAALALLLQLDKRILDLGTGSGAIAIALAKEGPDAEVIAVDISPDALALARENAER 156 (280)
T ss_pred cceeeeeCCCc--eecCCchHHHHHHHHHhhhhcCCcEEEecCChHHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHH
Confidence 78888888876 45676777652 2 12333333 799999999999999999875 999999999999999999999
Q ss_pred cCCCCcEEEEeccHH
Q 046527 140 NKVDNYVRAYNMDAR 154 (380)
Q Consensus 140 N~l~~ri~~~~~Da~ 154 (380)
|++ .++.++++|..
T Consensus 157 ~~l-~~~~~~~~dlf 170 (280)
T COG2890 157 NGL-VRVLVVQSDLF 170 (280)
T ss_pred cCC-ccEEEEeeecc
Confidence 999 44666665554
No 32
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.05 E-value=7.9e-10 Score=107.59 Aligned_cols=89 Identities=27% Similarity=0.363 Sum_probs=72.0
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHhcc---CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIISQF---RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i---~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na 137 (380)
.|..|.+++..+. +|..+|.+ ..+..+ .++.+|||+|||+|.+++.++... .+|+|+|+++.+++.|++|+
T Consensus 81 ~g~~f~v~~~vli--Pr~ete~lv~~~l~~~~~~~~~~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~ 158 (284)
T TIGR00536 81 YGLEFFVNEHVLI--PRPETEELVEKALASLISQNPILHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENA 158 (284)
T ss_pred cCeEEEECCCCcC--CCCccHHHHHHHHHHhhhcCCCCEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 6889999988644 66666654 222222 223689999999999999999864 59999999999999999999
Q ss_pred HHcCCCCcEEEEeccHHH
Q 046527 138 KVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 138 ~lN~l~~ri~~~~~Da~e 155 (380)
+.+++.++++++++|+.+
T Consensus 159 ~~~~~~~~v~~~~~d~~~ 176 (284)
T TIGR00536 159 EKNQLEHRVEFIQSNLFE 176 (284)
T ss_pred HHcCCCCcEEEEECchhc
Confidence 999998779999999754
No 33
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.05 E-value=1e-09 Score=108.31 Aligned_cols=89 Identities=24% Similarity=0.276 Sum_probs=70.7
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHhc-cCC--CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIISQ-FRP--GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~-i~~--g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na 137 (380)
.|..|.+++..|+ +|..++.+ ..+.. +.. ..+|||+|||+|.+++.++.. +.+|+++|+|+.+++.|++|+
T Consensus 100 ~g~~f~v~~~vli--pr~~te~lv~~~l~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~ 177 (307)
T PRK11805 100 CGLEFYVDERVLV--PRSPIAELIEDGFAPWLEDPPVTRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINI 177 (307)
T ss_pred cCcEEEECCCCcC--CCCchHHHHHHHHHHHhccCCCCEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHH
Confidence 6889999987755 44444332 22222 222 268999999999999999986 359999999999999999999
Q ss_pred HHcCCCCcEEEEeccHHH
Q 046527 138 KVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 138 ~lN~l~~ri~~~~~Da~e 155 (380)
+.+++.++++++++|+.+
T Consensus 178 ~~~~l~~~i~~~~~D~~~ 195 (307)
T PRK11805 178 ERHGLEDRVTLIESDLFA 195 (307)
T ss_pred HHhCCCCcEEEEECchhh
Confidence 999998889999999865
No 34
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.03 E-value=1.1e-09 Score=107.77 Aligned_cols=84 Identities=25% Similarity=0.407 Sum_probs=68.9
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN 140 (380)
+.....+||+..|-.-...|-++ +.+. ...+|++|||+|||+|.+++.+++.|+ +|+|+|++|.|++.|++|+++|
T Consensus 128 ~~~~I~idPg~AFGTG~H~TT~lcl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N 207 (295)
T PF06325_consen 128 DEIVIEIDPGMAFGTGHHPTTRLCLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELN 207 (295)
T ss_dssp TSEEEEESTTSSS-SSHCHHHHHHHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHT
T ss_pred CcEEEEECCCCcccCCCCHHHHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHc
Confidence 56778999998888766666554 4443 357889999999999999999999998 8999999999999999999999
Q ss_pred CCCCcEEE
Q 046527 141 KVDNYVRA 148 (380)
Q Consensus 141 ~l~~ri~~ 148 (380)
++.+++.+
T Consensus 208 ~~~~~~~v 215 (295)
T PF06325_consen 208 GVEDRIEV 215 (295)
T ss_dssp T-TTCEEE
T ss_pred CCCeeEEE
Confidence 99987654
No 35
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.01 E-value=1.5e-09 Score=89.47 Aligned_cols=59 Identities=24% Similarity=0.394 Sum_probs=55.8
Q ss_pred CCCeEEEecCCcchhHHHHhh--cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ--KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~--~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
||.+|||+|||+|.+++.+++ .+++|+|+|++|.+++.|++++...+..++++++++|+
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~ 61 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDA 61 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCC
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECcc
Confidence 578999999999999999999 68899999999999999999998888888899999998
No 36
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=98.99 E-value=1.1e-08 Score=98.83 Aligned_cols=65 Identities=26% Similarity=0.249 Sum_probs=58.0
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+.+|++|||+|||.|..++.++.. ...|+|+|+++..++.+++|++.+++.+ ++++++|+..+
T Consensus 67 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~ 134 (264)
T TIGR00446 67 LEPDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVLN-VAVTNFDGRVF 134 (264)
T ss_pred hCCCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCCc-EEEecCCHHHh
Confidence 45678999999999999999998875 2489999999999999999999999976 99999998754
No 37
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=98.99 E-value=1.4e-08 Score=93.66 Aligned_cols=64 Identities=25% Similarity=0.195 Sum_probs=57.2
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.++.+|||+|||+|.+++.+++. +++|+++|.++.+++.|++|++.+++.+ ++++++|+.+
T Consensus 41 ~~l~~g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~~-i~~~~~d~~~ 106 (187)
T PRK00107 41 PYLPGGERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLKN-VTVVHGRAEE 106 (187)
T ss_pred hhcCCCCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCCC-EEEEeccHhh
Confidence 44566899999999999999988863 5699999999999999999999999987 9999999865
No 38
>PRK14967 putative methyltransferase; Provisional
Probab=98.99 E-value=7.5e-09 Score=97.01 Aligned_cols=62 Identities=29% Similarity=0.392 Sum_probs=55.2
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++++|||+|||+|.+++.+++.+. +|+++|+++.+++.+++|+..+++ +++++++|+.+
T Consensus 33 ~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~ 95 (223)
T PRK14967 33 GLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWAR 95 (223)
T ss_pred ccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhh
Confidence 357789999999999999999998776 999999999999999999999887 37888888754
No 39
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=98.96 E-value=2.5e-08 Score=91.79 Aligned_cols=66 Identities=24% Similarity=0.312 Sum_probs=58.3
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.+.++.+|||+|||+|.+++.+++. +.+|+++|+++.+++.+++|++.+++.+++.++++|+.+++
T Consensus 37 ~~~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l 105 (198)
T PRK00377 37 RLRKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEIL 105 (198)
T ss_pred CCCCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhH
Confidence 4678899999999999999998864 35899999999999999999999997666999999987764
No 40
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.96 E-value=2.5e-09 Score=112.34 Aligned_cols=89 Identities=21% Similarity=0.228 Sum_probs=73.5
Q ss_pred CCeEEEEccCceeecChHHHHHH-H-HHhccC--------------------------CCCeEEEecCCcchhHHHHhhc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL-R-IISQFR--------------------------PGETICDMFAGIGPFAIPAAQK 116 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~-r-~i~~i~--------------------------~g~~VLDlfcGvG~fsl~aA~~ 116 (380)
.|..|.++++. +.||..||.+ . ++..+. ++.+|||+|||+|.+++.++..
T Consensus 82 ~g~~f~V~~~V--LIPRpeTE~Lve~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~ 159 (506)
T PRK01544 82 YSREFIVNKHV--LIPRSDTEVLVDVVFQCHSRESGNPEKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCE 159 (506)
T ss_pred cCcEEEeCCCc--ccCCCcHHHHHHHHHHHhhhccccccccccccccccccccccccCCCCEEEEccCchhHHHHHHHHH
Confidence 78999999986 5788888865 2 222211 3468999999999999998865
Q ss_pred --CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 117 --GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 117 --g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++|+|+|+|+.+++.|++|++.+++.+++.++++|+.+
T Consensus 160 ~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D~~~ 200 (506)
T PRK01544 160 LPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSNWFE 200 (506)
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecchhh
Confidence 469999999999999999999999998889999999754
No 41
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=98.95 E-value=1e-08 Score=100.05 Aligned_cols=89 Identities=20% Similarity=0.240 Sum_probs=71.0
Q ss_pred eCCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHH
Q 046527 64 QYGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 64 E~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~l 139 (380)
++.....++|+..|-.-...+..+ +.+. ...++++|||+|||+|.+++.+++.|+ +|+|+|+++.+++.+++|+..
T Consensus 125 ~~~~~i~ldpg~aFgtG~h~tt~l~l~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~ 204 (288)
T TIGR00406 125 EDALIIMLDPGLAFGTGTHPTTSLCLEWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAEL 204 (288)
T ss_pred CCcEEEEECCCCcccCCCCHHHHHHHHHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 356788999998887644444432 3332 345789999999999999999998876 899999999999999999999
Q ss_pred cCCCCcEEEEecc
Q 046527 140 NKVDNYVRAYNMD 152 (380)
Q Consensus 140 N~l~~ri~~~~~D 152 (380)
|++.+++.+..+|
T Consensus 205 n~~~~~~~~~~~~ 217 (288)
T TIGR00406 205 NQVSDRLQVKLIY 217 (288)
T ss_pred cCCCcceEEEecc
Confidence 9998767666554
No 42
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=98.94 E-value=9.3e-09 Score=92.93 Aligned_cols=61 Identities=30% Similarity=0.324 Sum_probs=54.1
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|++.+++ .++++++|+.+
T Consensus 17 ~~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~ 77 (179)
T TIGR00537 17 ELKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFK 77 (179)
T ss_pred hcCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEccccc
Confidence 44567899999999999999999888999999999999999999999987 37888888644
No 43
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.88 E-value=9.8e-09 Score=100.91 Aligned_cols=90 Identities=18% Similarity=0.230 Sum_probs=69.3
Q ss_pred CeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 046527 66 GATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY 145 (380)
Q Consensus 66 G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r 145 (380)
|.+.+-.++.-|..+....+.+.....+.++++|||+|||.|.++..++..+.+|+|+|+|+++++.+++++..++..++
T Consensus 7 ~~~~kk~~GQnFL~d~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~ 86 (294)
T PTZ00338 7 GMVFNKKFGQHILKNPLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASK 86 (294)
T ss_pred CcCcCCCCCccccCCHHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCc
Confidence 33333344444544443334333334567899999999999999999999888999999999999999999988776566
Q ss_pred EEEEeccHHH
Q 046527 146 VRAYNMDARE 155 (380)
Q Consensus 146 i~~~~~Da~e 155 (380)
++++++|+.+
T Consensus 87 v~ii~~Dal~ 96 (294)
T PTZ00338 87 LEVIEGDALK 96 (294)
T ss_pred EEEEECCHhh
Confidence 9999999865
No 44
>PRK07402 precorrin-6B methylase; Provisional
Probab=98.88 E-value=4.4e-08 Score=89.85 Aligned_cols=65 Identities=23% Similarity=0.301 Sum_probs=57.5
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.+.++.+|||+|||+|.+++.+++. +.+|+++|+++++++.+++|++.+++.+ ++++++|+.+.+
T Consensus 37 ~~~~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~~~-v~~~~~d~~~~~ 103 (196)
T PRK07402 37 RLEPDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGVKN-VEVIEGSAPECL 103 (196)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCC-eEEEECchHHHH
Confidence 4567899999999999999999865 4699999999999999999999999865 999999997644
No 45
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=98.88 E-value=1.4e-07 Score=88.61 Aligned_cols=88 Identities=26% Similarity=0.371 Sum_probs=66.7
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHhccC-CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIISQFR-PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~~i~-~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~l 139 (380)
.+..|.++...+. ++..++.+ .++..+. .+.+|||+|||+|.+++.++.. +..|+++|+++.+++.+++|+..
T Consensus 56 ~~~~~~~~~~~~~--p~~~~~~l~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~ 133 (251)
T TIGR03534 56 YGLDFKVSPGVLI--PRPDTEELVEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAAR 133 (251)
T ss_pred eceEEEECCCccc--CCCChHHHHHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHH
Confidence 5667777766543 33333332 2233332 3458999999999999999986 45999999999999999999999
Q ss_pred cCCCCcEEEEeccHHH
Q 046527 140 NKVDNYVRAYNMDARE 155 (380)
Q Consensus 140 N~l~~ri~~~~~Da~e 155 (380)
+++.+ +.++++|+.+
T Consensus 134 ~~~~~-~~~~~~d~~~ 148 (251)
T TIGR03534 134 LGLDN-VTFLQSDWFE 148 (251)
T ss_pred cCCCe-EEEEECchhc
Confidence 99874 8999998754
No 46
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=98.85 E-value=1.9e-08 Score=99.91 Aligned_cols=64 Identities=25% Similarity=0.344 Sum_probs=58.8
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.+|++|||+|||+|.+.+.++..++.|+|+|+++.+++.++.|++.+++.+ +.++++|+.+
T Consensus 178 ~~~~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~ 241 (329)
T TIGR01177 178 ARVTEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATK 241 (329)
T ss_pred hCCCCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhc
Confidence 457889999999999999999999989999999999999999999999999987 8888888754
No 47
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=98.84 E-value=1.1e-08 Score=100.53 Aligned_cols=80 Identities=28% Similarity=0.393 Sum_probs=66.0
Q ss_pred CCeEEEEccCceeecChHHHHHH--HHHh-ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL--RIIS-QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~--r~i~-~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN 140 (380)
+-+..++||+-.|-.-...|..+ +++. ...+|++|||+|||+|.+++.+++.|+ +|+|+|++|.|++.+++|+++|
T Consensus 129 ~~~~i~lDPGlAFGTG~HpTT~lcL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N 208 (300)
T COG2264 129 DELNIELDPGLAFGTGTHPTTSLCLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLN 208 (300)
T ss_pred CceEEEEccccccCCCCChhHHHHHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHc
Confidence 46778999998776544333332 3332 356899999999999999999999998 7999999999999999999999
Q ss_pred CCCC
Q 046527 141 KVDN 144 (380)
Q Consensus 141 ~l~~ 144 (380)
++..
T Consensus 209 ~v~~ 212 (300)
T COG2264 209 GVEL 212 (300)
T ss_pred CCch
Confidence 9985
No 48
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=98.83 E-value=5.1e-08 Score=99.00 Aligned_cols=91 Identities=16% Similarity=0.150 Sum_probs=63.2
Q ss_pred EEeCCeEEEEccCceeecChHHHHHHHHHhccC--CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527 62 VKQYGATFKLDYSLVYWNSRLEHEHLRIISQFR--PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 62 v~E~G~~F~id~~~ff~n~rl~tE~~r~i~~i~--~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na 137 (380)
+.+.++.|.-.++ +|--.++..-.+..+..+. .+.+|||+|||+|.+++.+++++ .+|+++|.|+.|++.+++|+
T Consensus 194 ~~~~~~~~~~~~g-VFs~~~LD~GtrllL~~lp~~~~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~ 272 (378)
T PRK15001 194 LEGTDWTIHNHAN-VFSRTGLDIGARFFMQHLPENLEGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNV 272 (378)
T ss_pred EcCceEEEEecCC-ccCCCCcChHHHHHHHhCCcccCCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHH
Confidence 4333334433344 4444444433333333333 24599999999999999999874 59999999999999999999
Q ss_pred HHcCCC--CcEEEEeccH
Q 046527 138 KVNKVD--NYVRAYNMDA 153 (380)
Q Consensus 138 ~lN~l~--~ri~~~~~Da 153 (380)
+.|+.. .+++++.+|+
T Consensus 273 ~~n~~~~~~~v~~~~~D~ 290 (378)
T PRK15001 273 ETNMPEALDRCEFMINNA 290 (378)
T ss_pred HHcCcccCceEEEEEccc
Confidence 999864 2578887775
No 49
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=98.82 E-value=5.6e-08 Score=89.41 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=57.3
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
...+|||+|||+|.+++.+|+.. ..|+|+|+++.+++.|++++..+++.+ ++++++|+.+++..
T Consensus 16 ~~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~n-i~~i~~d~~~~~~~ 81 (194)
T TIGR00091 16 KAPLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLKN-LHVLCGDANELLDK 81 (194)
T ss_pred CCceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCCC-EEEEccCHHHHHHh
Confidence 45699999999999999999873 489999999999999999999999985 99999999987643
No 50
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=98.82 E-value=2.3e-07 Score=84.38 Aligned_cols=61 Identities=26% Similarity=0.288 Sum_probs=54.7
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
.+.++.+|||+|||+|.+++.+++.+ .+|+++|+++.+++.|++|++.+++.+ ++++++|+
T Consensus 28 ~~~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~~~-i~~~~~d~ 90 (187)
T PRK08287 28 ELHRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGCGN-IDIIPGEA 90 (187)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCCCC-eEEEecCc
Confidence 45688899999999999999999864 499999999999999999999998865 89998875
No 51
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=98.82 E-value=5.7e-08 Score=100.29 Aligned_cols=66 Identities=24% Similarity=0.257 Sum_probs=58.8
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+..+.+|++|||+|||+|.+++.++.. ..+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.+.
T Consensus 245 ~l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~~-v~~~~~D~~~~ 313 (444)
T PRK14902 245 ALDPKGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLTN-IETKALDARKV 313 (444)
T ss_pred HhCCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCCcccc
Confidence 345678899999999999999999975 3599999999999999999999999987 99999998764
No 52
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=98.81 E-value=5.7e-08 Score=88.86 Aligned_cols=61 Identities=25% Similarity=0.262 Sum_probs=54.8
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
++.+|||+|||+|.+++.++..+ ++|+++|.++.+++.+++|++.+++.+ ++++++|+.++
T Consensus 42 ~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~~-i~~i~~d~~~~ 104 (181)
T TIGR00138 42 DGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLNN-VEIVNGRAEDF 104 (181)
T ss_pred CCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCCC-eEEEecchhhc
Confidence 48899999999999999988654 589999999999999999999999876 99999998763
No 53
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=2.1e-08 Score=98.31 Aligned_cols=87 Identities=20% Similarity=0.234 Sum_probs=61.8
Q ss_pred CCeEEEEccCceeecChHHHHHHHHHhcc--CCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHLRIISQF--RPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~i--~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN 140 (380)
.+++|.=+++-|-+ .++..-.+.++..+ ..+..|||+|||.|.+|+.+|+... +|+.+|.|..|++.+++|++.|
T Consensus 127 ~~~~~~t~pGVFS~-~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N 205 (300)
T COG2813 127 HELTFKTLPGVFSR-DKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAAN 205 (300)
T ss_pred CceEEEeCCCCCcC-CCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHc
Confidence 34555555554443 33322222223322 3344999999999999999999864 9999999999999999999999
Q ss_pred CCCCcEEEEeccH
Q 046527 141 KVDNYVRAYNMDA 153 (380)
Q Consensus 141 ~l~~ri~~~~~Da 153 (380)
++++. .++..|.
T Consensus 206 ~~~~~-~v~~s~~ 217 (300)
T COG2813 206 GVENT-EVWASNL 217 (300)
T ss_pred CCCcc-EEEEecc
Confidence 99974 5565443
No 54
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=98.81 E-value=1.5e-07 Score=89.91 Aligned_cols=83 Identities=29% Similarity=0.401 Sum_probs=63.2
Q ss_pred eCCeEEEEccCceeecChHHHHH--HHHH-hccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHH
Q 046527 64 QYGATFKLDYSLVYWNSRLEHEH--LRII-SQFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 64 E~G~~F~id~~~ff~n~rl~tE~--~r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~l 139 (380)
+......++++-.|......+.. ++.+ ....++.+|||+|||+|.+++.+++.|+ +|+|+|+++.+++.|++|++.
T Consensus 85 ~~~~~i~i~p~~afgtg~h~tt~~~l~~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~ 164 (250)
T PRK00517 85 PDEINIELDPGMAFGTGTHPTTRLCLEALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAEL 164 (250)
T ss_pred CCeEEEEECCCCccCCCCCHHHHHHHHHHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHH
Confidence 34556788888766653333222 2233 2356889999999999999999988877 699999999999999999999
Q ss_pred cCCCCcE
Q 046527 140 NKVDNYV 146 (380)
Q Consensus 140 N~l~~ri 146 (380)
|++.+.+
T Consensus 165 ~~~~~~~ 171 (250)
T PRK00517 165 NGVELNV 171 (250)
T ss_pred cCCCceE
Confidence 9885433
No 55
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.81 E-value=9.3e-09 Score=92.94 Aligned_cols=65 Identities=29% Similarity=0.354 Sum_probs=55.7
Q ss_pred CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
++|+|+|||+|.-++.+|+.+.+|+|+|++|.-+++|++|++.-|+.++|.++++|..+.++.+.
T Consensus 1 ~~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~ 65 (163)
T PF09445_consen 1 TTVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLK 65 (163)
T ss_dssp SEEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB-
T ss_pred CEEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhcc
Confidence 47999999999999999999999999999999999999999999999999999999999876543
No 56
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.78 E-value=1.2e-08 Score=93.21 Aligned_cols=67 Identities=33% Similarity=0.604 Sum_probs=52.9
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcCC--E---------EEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKGC--I---------VFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~---------V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
++.+.+|++|||.|||+|++.+.+|..+. . ++|.|+++.+++.+++|++..++.+.+.+.+.|+.++
T Consensus 23 la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~~~~~D~~~l 100 (179)
T PF01170_consen 23 LAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYIDFIQWDAREL 100 (179)
T ss_dssp HTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEEEEE--GGGG
T ss_pred HhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceEEEecchhhc
Confidence 35678899999999999999999987644 4 7899999999999999999999998899998888654
No 57
>PRK14968 putative methyltransferase; Provisional
Probab=98.78 E-value=7.9e-08 Score=86.20 Aligned_cols=61 Identities=34% Similarity=0.446 Sum_probs=55.2
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCc-EEEEeccHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNY-VRAYNMDAR 154 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~r-i~~~~~Da~ 154 (380)
.++.+|||+|||+|.+++.++..+.+|+++|+++.+++.+++|+..+++.++ +.++++|+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~ 83 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLF 83 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEecccc
Confidence 6788999999999999999999988999999999999999999999988754 778887753
No 58
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.76 E-value=3.1e-08 Score=95.26 Aligned_cols=76 Identities=16% Similarity=0.228 Sum_probs=59.0
Q ss_pred eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
|..++...+.......+.++++|||+|||+|.++..+++.+.+|+++|+++.+++.+++++.. . ++++++++|+.+
T Consensus 11 fl~d~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~--~-~~v~ii~~D~~~ 86 (258)
T PRK14896 11 FLIDDRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIA--A-GNVEIIEGDALK 86 (258)
T ss_pred ccCCHHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhcc--C-CCEEEEEecccc
Confidence 443443333332233466889999999999999999999988999999999999999998854 2 358999998753
No 59
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=98.75 E-value=1.9e-07 Score=77.71 Aligned_cols=63 Identities=33% Similarity=0.493 Sum_probs=54.8
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++++|||+|||.|.++..+++. +.+|+++|+++.+++.+++|++.+++.+ ++++.+|+..
T Consensus 16 ~~~~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~~~-~~~~~~~~~~ 80 (124)
T TIGR02469 16 RLRPGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGVSN-IVIVEGDAPE 80 (124)
T ss_pred CCCCCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCCCc-eEEEeccccc
Confidence 3456789999999999999999986 3599999999999999999999988875 8888887653
No 60
>PLN02672 methionine S-methyltransferase
Probab=98.74 E-value=4.9e-08 Score=109.78 Aligned_cols=91 Identities=22% Similarity=0.214 Sum_probs=72.2
Q ss_pred CCeEEEEccCceeecChHHHHHH-HHHhccC----CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL-RIISQFR----PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~~i~----~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na 137 (380)
.|+.|.++++. +.+|..+|.+ ..+.... ++.+|||+|||+|.+++.+++.. ++|+|+|+|++|++.|++|+
T Consensus 85 ~~l~~~V~p~V--LIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na 162 (1082)
T PLN02672 85 KKLTMMEIPSI--FIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINL 162 (1082)
T ss_pred cCCceeeCCCc--ccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHH
Confidence 78888888885 5677777765 2232221 34689999999999999999864 59999999999999999999
Q ss_pred HHcCCC---------------CcEEEEeccHHHHH
Q 046527 138 KVNKVD---------------NYVRAYNMDAREFI 157 (380)
Q Consensus 138 ~lN~l~---------------~ri~~~~~Da~e~l 157 (380)
+.|+++ ++++++++|+.+.+
T Consensus 163 ~~n~l~~~~~~~~~~~~~~l~~rV~f~~sDl~~~~ 197 (1082)
T PLN02672 163 YLNALDDDGLPVYDGEGKTLLDRVEFYESDLLGYC 197 (1082)
T ss_pred HHcCcccccccccccccccccccEEEEECchhhhc
Confidence 998653 46899999987654
No 61
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=98.74 E-value=3.4e-08 Score=88.67 Aligned_cols=62 Identities=21% Similarity=0.356 Sum_probs=54.0
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.++++|||+|||+|.++..+++++.+|+++|+++.+++.+++|+.. . ++++++++|+.++
T Consensus 10 ~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~--~-~~v~ii~~D~~~~ 71 (169)
T smart00650 10 NLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAA--A-DNLTVIHGDALKF 71 (169)
T ss_pred CCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhcc--C-CCEEEEECchhcC
Confidence 356788999999999999999999988999999999999999999854 2 3589999998654
No 62
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=98.74 E-value=1.9e-07 Score=93.74 Aligned_cols=86 Identities=12% Similarity=0.162 Sum_probs=64.3
Q ss_pred CCeEEEEccCceeecCh-HHHHHH-HHHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc
Q 046527 65 YGATFKLDYSLVYWNSR-LEHEHL-RIISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~r-l~tE~~-r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN 140 (380)
.++.+...++.|++... ..++.+ ..+.. ....+|||+|||+|.+++.+++.+ .+|+++|+++.|++.+++|++.|
T Consensus 165 ~~l~i~~~pgvFs~~~lD~gt~lLl~~l~~-~~~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n 243 (342)
T PRK09489 165 DGLTVKTLPGVFSRDGLDVGSQLLLSTLTP-HTKGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAAN 243 (342)
T ss_pred CCEEEEeCCCCCCCCCCCHHHHHHHHhccc-cCCCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHc
Confidence 56778888888887543 222322 21221 234589999999999999999874 49999999999999999999999
Q ss_pred CCCCcEEEEeccH
Q 046527 141 KVDNYVRAYNMDA 153 (380)
Q Consensus 141 ~l~~ri~~~~~Da 153 (380)
++.. +++.+|+
T Consensus 244 ~l~~--~~~~~D~ 254 (342)
T PRK09489 244 GLEG--EVFASNV 254 (342)
T ss_pred CCCC--EEEEccc
Confidence 9864 5666665
No 63
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=98.73 E-value=1.6e-07 Score=87.10 Aligned_cols=62 Identities=16% Similarity=0.139 Sum_probs=55.0
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
++.+|||+|||+|.++..+++.. .+|+|+|+++.+++.|++|++.+++.+ ++++++|+.+.+
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~~~-v~~~~~d~~~~l 103 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGLTN-LRLLCGDAVEVL 103 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCCCC-EEEEecCHHHHH
Confidence 57899999999999999998763 589999999999999999999999865 999999994443
No 64
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=98.73 E-value=1.3e-07 Score=97.72 Aligned_cols=65 Identities=23% Similarity=0.263 Sum_probs=57.0
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
....+|++|||+|||+|..++.++.. +.+|+|+|+++.+++.+++|++.+|+.+ ++++++|+.++
T Consensus 246 l~~~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~~-v~~~~~Da~~~ 313 (445)
T PRK14904 246 LNPQPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGITI-IETIEGDARSF 313 (445)
T ss_pred cCCCCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCCe-EEEEeCccccc
Confidence 34578899999999999999988864 3599999999999999999999999975 99999998654
No 65
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=98.73 E-value=3.1e-08 Score=91.01 Aligned_cols=69 Identities=30% Similarity=0.380 Sum_probs=62.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
..+.+|+++||+|||+|.+++.+|..+ ++|+|+|.++++++..++|++..+++| ++++.+|+.+.+..+
T Consensus 30 L~~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg~~n-~~vv~g~Ap~~L~~~ 100 (187)
T COG2242 30 LRPRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFGVDN-LEVVEGDAPEALPDL 100 (187)
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCCc-EEEEeccchHhhcCC
Confidence 356899999999999999999999543 599999999999999999999999876 999999999998755
No 66
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.73 E-value=5.1e-07 Score=86.37 Aligned_cols=86 Identities=24% Similarity=0.314 Sum_probs=65.9
Q ss_pred CCeEEEEccCceeecChHHHHHH-HHHh---ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHL-RIIS---QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~-r~i~---~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~ 138 (380)
.|..|.++...+ .+|..+|.+ ..+. ...++.+|||+|||+|.+++.++... .+|+++|+++.+++.+++|+.
T Consensus 76 ~~~~~~~~~~~l--ipr~~te~l~~~~~~~~~~~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~ 153 (275)
T PRK09328 76 WGLDFKVSPGVL--IPRPETEELVEWALEALLLKEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK 153 (275)
T ss_pred cCcEEEECCCce--eCCCCcHHHHHHHHHhccccCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH
Confidence 567788777643 455555554 2221 23567899999999999999999875 699999999999999999998
Q ss_pred HcCCCCcEEEEeccH
Q 046527 139 VNKVDNYVRAYNMDA 153 (380)
Q Consensus 139 lN~l~~ri~~~~~Da 153 (380)
++...++.++++|+
T Consensus 154 -~~~~~~i~~~~~d~ 167 (275)
T PRK09328 154 -HGLGARVEFLQGDW 167 (275)
T ss_pred -hCCCCcEEEEEccc
Confidence 44444689998876
No 67
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=98.71 E-value=7.2e-08 Score=92.35 Aligned_cols=66 Identities=20% Similarity=0.161 Sum_probs=59.7
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+.+|++|+|.|.|+|.++..+|.. | .+|+++|+.++.++.|++|++..++.+++++..+|+.+.
T Consensus 90 ~gi~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~ 158 (256)
T COG2519 90 LGISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREG 158 (256)
T ss_pred cCCCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEecccccc
Confidence 56889999999999999999999964 3 399999999999999999999999999899998888764
No 68
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.71 E-value=1.4e-07 Score=95.32 Aligned_cols=67 Identities=25% Similarity=0.490 Sum_probs=59.9
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcCC-----------------------------------------EEEEEeCCHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKGC-----------------------------------------IVFANDLNPD 128 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~-----------------------------------------~V~avDlnp~ 128 (380)
++...+++.++|.+||+|+|.|.+|..+. .++|+|+++.
T Consensus 186 lagw~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r 265 (381)
T COG0116 186 LAGWKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPR 265 (381)
T ss_pred HcCCCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHH
Confidence 35677889999999999999999998763 2779999999
Q ss_pred HHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 129 SVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 129 Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+++.|+.|+...|+.+.|++.++|+..+
T Consensus 266 ~i~~Ak~NA~~AGv~d~I~f~~~d~~~l 293 (381)
T COG0116 266 HIEGAKANARAAGVGDLIEFKQADATDL 293 (381)
T ss_pred HHHHHHHHHHhcCCCceEEEEEcchhhC
Confidence 9999999999999999999999998654
No 69
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=98.69 E-value=4.8e-08 Score=85.75 Aligned_cols=61 Identities=23% Similarity=0.354 Sum_probs=54.6
Q ss_pred CCCCeEEEecCCcchhHHHHhh-c--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQ-K--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~-~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++.+|||+|||+|.++..++. . +.+|+|+|+|+.+++.|+.+++.+++. +++++++|+.+
T Consensus 2 ~~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~ 65 (152)
T PF13847_consen 2 KSNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIED 65 (152)
T ss_dssp TTTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTC
T ss_pred CCCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhc
Confidence 4678999999999999999994 3 569999999999999999999999999 49999999976
No 70
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=98.69 E-value=2.2e-07 Score=88.69 Aligned_cols=64 Identities=22% Similarity=0.223 Sum_probs=59.1
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.++.+|||+|||+|.+++.+++.+.+|+++|+++.+++.|++++...++.++++++++|+.++.
T Consensus 43 ~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~ 106 (255)
T PRK11036 43 PRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIA 106 (255)
T ss_pred CCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHh
Confidence 4567999999999999999999999999999999999999999999998877999999998863
No 71
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.69 E-value=4.9e-08 Score=91.71 Aligned_cols=93 Identities=24% Similarity=0.268 Sum_probs=75.4
Q ss_pred EEccCceee-cChHHHHHHHH-HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 046527 70 KLDYSLVYW-NSRLEHEHLRI-ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVR 147 (380)
Q Consensus 70 ~id~~~ff~-n~rl~tE~~r~-i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~ 147 (380)
.++....|| .+...++++.. +.....-++|+|.|||+|+-++..|.+++.|+++|++|.-+.+|++|++.-|+.+||+
T Consensus 67 ~md~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rIt 146 (263)
T KOG2730|consen 67 YMDREGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRIT 146 (263)
T ss_pred eecccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeE
Confidence 445555555 34444555422 1222256799999999999999999999999999999999999999999999999999
Q ss_pred EEeccHHHHHHHHhc
Q 046527 148 AYNMDAREFIRQLMT 162 (380)
Q Consensus 148 ~~~~Da~e~l~~l~~ 162 (380)
+++||..+....+..
T Consensus 147 FI~GD~ld~~~~lq~ 161 (263)
T KOG2730|consen 147 FICGDFLDLASKLKA 161 (263)
T ss_pred EEechHHHHHHHHhh
Confidence 999999999887763
No 72
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=3.3e-07 Score=94.51 Aligned_cols=65 Identities=23% Similarity=0.259 Sum_probs=58.3
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
....+|++|||+|||+|..++.++... .+|+|+|+++..++.+++|++.+|+.+ ++++++|+.+.
T Consensus 248 l~~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~~-v~~~~~D~~~~ 315 (434)
T PRK14901 248 LDPQPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLKS-IKILAADSRNL 315 (434)
T ss_pred hCCCCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCCe-EEEEeCChhhc
Confidence 456789999999999999999998752 489999999999999999999999987 99999998754
No 73
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=98.68 E-value=6.2e-07 Score=92.57 Aligned_cols=80 Identities=16% Similarity=0.208 Sum_probs=65.0
Q ss_pred eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc
Q 046527 76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD 152 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D 152 (380)
.|..+..+......+..+.+|++|||+|||.|..+++++.. +.+|+|+|+++..++.+++|++..|+.+ ++++++|
T Consensus 218 ~~~~Qd~~s~~~~~~l~~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~~-v~~~~~D 296 (431)
T PRK14903 218 LATVQGESSQIVPLLMELEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLSS-IEIKIAD 296 (431)
T ss_pred eEEEECHHHHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCCe-EEEEECc
Confidence 34444444433333456788999999999999999998875 4599999999999999999999999976 8999999
Q ss_pred HHHH
Q 046527 153 AREF 156 (380)
Q Consensus 153 a~e~ 156 (380)
+.++
T Consensus 297 a~~l 300 (431)
T PRK14903 297 AERL 300 (431)
T ss_pred hhhh
Confidence 8765
No 74
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=98.68 E-value=4.2e-07 Score=88.56 Aligned_cols=83 Identities=22% Similarity=0.175 Sum_probs=61.9
Q ss_pred EEEccCceeecCh----HHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527 69 FKLDYSLVYWNSR----LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144 (380)
Q Consensus 69 F~id~~~ff~n~r----l~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ 144 (380)
|...+..+|+... ...+.+..+..+ ++.+|||+|||+|.+++.+++.|.+|+|+|+|+.+++.++++++.+++ +
T Consensus 91 fy~~~~~~f~~~~~~~~~~~~~~~~~~~~-~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l-~ 168 (287)
T PRK12335 91 FYCKPEDYFHKKYNLTATHSEVLEAVQTV-KPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL-N 168 (287)
T ss_pred EEEcchhhHhhhhccccccHHHHHHhhcc-CCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC-c
Confidence 5555555555432 112222333333 445999999999999999999999999999999999999999999988 3
Q ss_pred cEEEEeccHH
Q 046527 145 YVRAYNMDAR 154 (380)
Q Consensus 145 ri~~~~~Da~ 154 (380)
+++...|+.
T Consensus 169 -v~~~~~D~~ 177 (287)
T PRK12335 169 -IRTGLYDIN 177 (287)
T ss_pred -eEEEEechh
Confidence 777777654
No 75
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=98.68 E-value=2e-07 Score=94.75 Aligned_cols=63 Identities=14% Similarity=0.224 Sum_probs=57.5
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
.+..+||+|||+|.+++.+|+.. ..++|+|+++.+++.|.+++..+++.| +.++++|+..++.
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL~N-V~~i~~DA~~ll~ 186 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNLKN-LLIINYDARLLLE 186 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCc-EEEEECCHHHhhh
Confidence 45799999999999999999874 599999999999999999999999987 9999999987763
No 76
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=98.67 E-value=3.9e-07 Score=93.73 Aligned_cols=63 Identities=19% Similarity=0.165 Sum_probs=56.1
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
....+|++|||+|||+|..++.++..+ .+|+|+|+++.+++.+++|++.+++. ++++++|+.+
T Consensus 240 l~~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~~--~~~~~~D~~~ 304 (427)
T PRK10901 240 LAPQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGLK--ATVIVGDARD 304 (427)
T ss_pred cCCCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCCC--eEEEEcCccc
Confidence 356789999999999999999999864 49999999999999999999999985 6789999865
No 77
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=98.63 E-value=1.6e-07 Score=93.43 Aligned_cols=61 Identities=13% Similarity=0.172 Sum_probs=51.7
Q ss_pred CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEe-ccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYN-MDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~-~Da~e 155 (380)
++.++||+|||+|.+...++.+ +.+++|+|+++.|++.|++|++.| ++.++|++.. .|...
T Consensus 114 ~~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~ 178 (321)
T PRK11727 114 ANVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKA 178 (321)
T ss_pred CCceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhh
Confidence 4579999999999888877765 569999999999999999999999 8998888864 44443
No 78
>PHA03412 putative methyltransferase; Provisional
Probab=98.62 E-value=3e-07 Score=87.80 Aligned_cols=54 Identities=20% Similarity=0.178 Sum_probs=45.5
Q ss_pred CCCeEEEecCCcchhHHHHhhc-----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQK-----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~-----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.+|||+|||+|.+++.++++ ..+|+++|+++.++++|++|+. .+.++++|+.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~ 107 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADAL 107 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchh
Confidence 4679999999999999998864 3489999999999999998852 2678887765
No 79
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=98.60 E-value=2.2e-07 Score=86.62 Aligned_cols=64 Identities=19% Similarity=0.179 Sum_probs=57.4
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.++++|||+|||+|.++..+++... +|+++|+++++++.|++|++.+++.+ ++++++|+.+
T Consensus 73 l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~~~-v~~~~~d~~~ 139 (215)
T TIGR00080 73 LELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGLDN-VIVIVGDGTQ 139 (215)
T ss_pred hCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCCCC-eEEEECCccc
Confidence 3577899999999999999999998743 59999999999999999999999865 9999999865
No 80
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=98.58 E-value=7.1e-07 Score=91.78 Aligned_cols=77 Identities=16% Similarity=0.007 Sum_probs=59.1
Q ss_pred eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
|..+..+...........+|++|||+|||.|..++.++.. .++|+|+|+++..++.+++|++.+|+...+++..+|+
T Consensus 220 ~~~Qd~~s~~~~~~L~~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~ 298 (426)
T TIGR00563 220 VTVQDASAQWVATWLAPQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDG 298 (426)
T ss_pred EEEECHHHHHHHHHhCCCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEecccc
Confidence 3344433333333345678999999999999999999975 2599999999999999999999999874444466654
No 81
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=98.58 E-value=1.4e-07 Score=91.78 Aligned_cols=66 Identities=26% Similarity=0.454 Sum_probs=54.3
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+++|++|||+|||.|.+++.+|++ |++|+|+.+|++.++++++.++..|+.+++++..+|.+++
T Consensus 58 ~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~ 124 (273)
T PF02353_consen 58 LGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDL 124 (273)
T ss_dssp TT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-
T ss_pred hCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeecccc
Confidence 45789999999999999999999998 9999999999999999999999999999999999998765
No 82
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=98.57 E-value=3.9e-07 Score=84.82 Aligned_cols=64 Identities=25% Similarity=0.251 Sum_probs=58.0
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..++.+|||+|||+|.++..++..+.+|+|+|+++.+++.|++++..++..+++.+.++|+.+.
T Consensus 53 ~~~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~ 116 (219)
T TIGR02021 53 PLKGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSL 116 (219)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhC
Confidence 4568999999999999999999988899999999999999999999888766699999998764
No 83
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=98.56 E-value=5.1e-07 Score=85.84 Aligned_cols=83 Identities=16% Similarity=0.056 Sum_probs=69.6
Q ss_pred cChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 79 NSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 79 n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+......+..+....+.++|||+|||+|.-++.++.. +.+|+++|+++++++.|++|++.+++.++++++.+|+.+
T Consensus 52 v~~~~g~~L~~l~~~~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~ 131 (234)
T PLN02781 52 VPVDEGLFLSMLVKIMNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALS 131 (234)
T ss_pred cCHHHHHHHHHHHHHhCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHH
Confidence 34434445566667778899999999999977777653 349999999999999999999999999999999999999
Q ss_pred HHHHHh
Q 046527 156 FIRQLM 161 (380)
Q Consensus 156 ~l~~l~ 161 (380)
.+..+.
T Consensus 132 ~L~~l~ 137 (234)
T PLN02781 132 ALDQLL 137 (234)
T ss_pred HHHHHH
Confidence 998875
No 84
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.55 E-value=4e-07 Score=84.51 Aligned_cols=64 Identities=22% Similarity=0.225 Sum_probs=57.3
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++++|||+|||+|.++..+++. +.+|+++|+++.+++.+++|+..+++.++++++++|+.+
T Consensus 69 ~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~ 135 (205)
T PRK13944 69 EPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKR 135 (205)
T ss_pred CCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCccc
Confidence 4578899999999999999988875 359999999999999999999999988779999999865
No 85
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=98.54 E-value=2.2e-07 Score=85.68 Aligned_cols=62 Identities=24% Similarity=0.202 Sum_probs=56.1
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..++.+|||+|||+|.+++.+|++|.+|+|+|+|+.+++.++++++.+++.+ +++..+|+.+
T Consensus 28 ~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~~~-v~~~~~d~~~ 89 (197)
T PRK11207 28 VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENLDN-LHTAVVDLNN 89 (197)
T ss_pred cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCCCc-ceEEecChhh
Confidence 3456899999999999999999999999999999999999999999999875 8888888754
No 86
>PHA03411 putative methyltransferase; Provisional
Probab=98.54 E-value=1.5e-06 Score=84.80 Aligned_cols=75 Identities=17% Similarity=0.131 Sum_probs=56.9
Q ss_pred CceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527 74 SLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151 (380)
Q Consensus 74 ~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~ 151 (380)
...|+.++...... +.....+.+|||+|||+|.+++.++.+ +.+|+++|+|+.+++.+++|. . +++++++
T Consensus 45 ~G~FfTP~~i~~~f--~~~~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~-----~-~v~~v~~ 116 (279)
T PHA03411 45 SGAFFTPEGLAWDF--TIDAHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL-----P-EAEWITS 116 (279)
T ss_pred ceeEcCCHHHHHHH--HhccccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC-----c-CCEEEEC
Confidence 45677776444332 223344569999999999999988875 459999999999999999874 2 3788999
Q ss_pred cHHHH
Q 046527 152 DAREF 156 (380)
Q Consensus 152 Da~e~ 156 (380)
|++++
T Consensus 117 D~~e~ 121 (279)
T PHA03411 117 DVFEF 121 (279)
T ss_pred chhhh
Confidence 98765
No 87
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=98.52 E-value=3.3e-07 Score=89.48 Aligned_cols=69 Identities=26% Similarity=0.392 Sum_probs=63.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
..+.+|++|||+|||.|.+++.+|+. +++|+|+++|+...+.+++-++.-|++++++++..|.+++-..
T Consensus 68 l~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r~~~~gl~~~v~v~l~d~rd~~e~ 137 (283)
T COG2230 68 LGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKRIAARGLEDNVEVRLQDYRDFEEP 137 (283)
T ss_pred cCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHHHHHcCCCcccEEEeccccccccc
Confidence 46789999999999999999999987 7899999999999999999999999998899999999887443
No 88
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.50 E-value=2.8e-07 Score=100.42 Aligned_cols=66 Identities=21% Similarity=0.363 Sum_probs=57.4
Q ss_pred hcc-CCCCeEEEecCCcchhHHHHhhcC--------------------------------------------CEEEEEeC
Q 046527 91 SQF-RPGETICDMFAGIGPFAIPAAQKG--------------------------------------------CIVFANDL 125 (380)
Q Consensus 91 ~~i-~~g~~VLDlfcGvG~fsl~aA~~g--------------------------------------------~~V~avDl 125 (380)
..+ .++..++|.|||+|+|.+.+|..+ .+++|+|+
T Consensus 185 a~w~~~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Di 264 (702)
T PRK11783 185 SGWPQEGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDI 264 (702)
T ss_pred cCCCCCCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEEC
Confidence 344 568899999999999999987531 26999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 126 NPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 126 np~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
++.+++.|++|+..+|+.+.+++.++|+.++
T Consensus 265 d~~av~~A~~N~~~~g~~~~i~~~~~D~~~~ 295 (702)
T PRK11783 265 DPRVIQAARKNARRAGVAELITFEVKDVADL 295 (702)
T ss_pred CHHHHHHHHHHHHHcCCCcceEEEeCChhhc
Confidence 9999999999999999998899999998764
No 89
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=98.47 E-value=7.1e-07 Score=85.82 Aligned_cols=64 Identities=20% Similarity=0.318 Sum_probs=53.7
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
..+.+|++||+.|.|+|.+++.+++. + .+|+.+|.+++.++.|++|++.+++.+.+++.+.|+.
T Consensus 36 l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~ 102 (247)
T PF08704_consen 36 LDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVC 102 (247)
T ss_dssp TT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GG
T ss_pred cCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEeccee
Confidence 56899999999999999999999975 2 4999999999999999999999999988999999985
No 90
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.47 E-value=3.4e-07 Score=88.73 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=54.2
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.++++|||+|||+|.++..+++.+.+|+|+|+++.+++.+++++.. ++++++++|+.++
T Consensus 39 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~ 99 (272)
T PRK00274 39 GPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKV 99 (272)
T ss_pred CCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcC
Confidence 467889999999999999999999988999999999999999988742 3599999998864
No 91
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=98.46 E-value=6.2e-07 Score=82.63 Aligned_cols=59 Identities=20% Similarity=0.115 Sum_probs=52.1
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++.+|||+|||+|.+++.++++|.+|+|+|+++.+++.++++++.+++. +.+..+|+.
T Consensus 29 ~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~~--v~~~~~d~~ 87 (195)
T TIGR00477 29 VAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENLP--LRTDAYDIN 87 (195)
T ss_pred CCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCCC--ceeEeccch
Confidence 34579999999999999999999999999999999999999999988874 667777764
No 92
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=98.45 E-value=6.4e-07 Score=89.24 Aligned_cols=63 Identities=21% Similarity=0.258 Sum_probs=56.8
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+|.+|||+|||.|.++..+++.|++|+|+|.++++++.|++++..+++..+++++++|+.++
T Consensus 130 ~~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l 192 (322)
T PLN02396 130 FEGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKL 192 (322)
T ss_pred CCCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHh
Confidence 356799999999999999999999999999999999999999988877665699999998765
No 93
>PRK04266 fibrillarin; Provisional
Probab=98.44 E-value=1.1e-05 Score=76.52 Aligned_cols=61 Identities=20% Similarity=0.199 Sum_probs=51.4
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
..+.+|.+|||+|||+|.+++.++... .+|+|+|+++.+++.+.++++.. .+ +.++.+|+.
T Consensus 68 l~i~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~--~n-v~~i~~D~~ 130 (226)
T PRK04266 68 FPIKKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER--KN-IIPILADAR 130 (226)
T ss_pred CCCCCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc--CC-cEEEECCCC
Confidence 456789999999999999999999874 48999999999999988887643 33 788888875
No 94
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.43 E-value=1.3e-06 Score=81.69 Aligned_cols=64 Identities=20% Similarity=0.116 Sum_probs=57.0
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.++++|||+|||+|.++..+++.. .+|+++|+++++++.+++|++.+++.+ ++++++|+.+
T Consensus 72 l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~~~-v~~~~gd~~~ 138 (212)
T PRK13942 72 LDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGYDN-VEVIVGDGTL 138 (212)
T ss_pred cCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCC-eEEEECCccc
Confidence 457889999999999999999888763 599999999999999999999999875 9999999753
No 95
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=98.42 E-value=8.5e-07 Score=84.54 Aligned_cols=63 Identities=19% Similarity=0.360 Sum_probs=56.2
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++.+|||+|||+|..++.+++. +++|+|+|+++.+++.|++++..+++.++++++++|+.+
T Consensus 54 ~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~ 120 (247)
T PRK15451 54 VQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRD 120 (247)
T ss_pred CCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhh
Confidence 467889999999999999988762 469999999999999999999998888779999999865
No 96
>PLN02476 O-methyltransferase
Probab=98.42 E-value=2.1e-06 Score=83.95 Aligned_cols=82 Identities=16% Similarity=0.100 Sum_probs=70.7
Q ss_pred ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.+...+..+....+.++|||+|+|+|..++.+|.. +.+|+++|.+++.++.|++|++.+|+.++|+++.+|+.+.
T Consensus 103 ~~~~g~lL~~L~~~~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~ 182 (278)
T PLN02476 103 SPDQAQLLAMLVQILGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAES 182 (278)
T ss_pred CHHHHHHHHHHHHhcCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHH
Confidence 4444444556666777899999999999999999974 3489999999999999999999999998999999999999
Q ss_pred HHHHh
Q 046527 157 IRQLM 161 (380)
Q Consensus 157 l~~l~ 161 (380)
++.+.
T Consensus 183 L~~l~ 187 (278)
T PLN02476 183 LKSMI 187 (278)
T ss_pred HHHHH
Confidence 98874
No 97
>PLN02244 tocopherol O-methyltransferase
Probab=98.40 E-value=1e-06 Score=88.12 Aligned_cols=62 Identities=24% Similarity=0.177 Sum_probs=57.2
Q ss_pred CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.++++|||+|||+|.++..+++. +++|+|+|+++.+++.++++++.+++.++++++.+|+.+
T Consensus 117 ~~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~ 179 (340)
T PLN02244 117 KRPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALN 179 (340)
T ss_pred CCCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCccc
Confidence 56889999999999999999986 789999999999999999999999998779999999865
No 98
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.38 E-value=1.7e-06 Score=83.71 Aligned_cols=77 Identities=17% Similarity=0.270 Sum_probs=60.9
Q ss_pred eecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 77 YWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 77 f~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
|..+....+..-....+.+++.||++|+|.|.++..+++++++|+|+|+++..++.+++... ..++++++++|+.++
T Consensus 12 FL~d~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~---~~~n~~vi~~DaLk~ 88 (259)
T COG0030 12 FLIDKNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFA---PYDNLTVINGDALKF 88 (259)
T ss_pred cccCHHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcc---cccceEEEeCchhcC
Confidence 34333333333334567779999999999999999999999999999999999999998865 234599999999754
No 99
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=98.38 E-value=1.8e-06 Score=80.01 Aligned_cols=65 Identities=20% Similarity=0.153 Sum_probs=57.9
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
...+.++.+|||+|||+|.++..++..+.+|+++|.++.+++.+++|++.+++.+ +++..+|+.+
T Consensus 73 ~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~~~~~~-v~~~~~d~~~ 137 (212)
T PRK00312 73 LLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQLGLHN-VSVRHGDGWK 137 (212)
T ss_pred hcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHHCCCCc-eEEEECCccc
Confidence 3456788999999999999999888877799999999999999999999999887 9999998743
No 100
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.38 E-value=4.1e-07 Score=83.89 Aligned_cols=59 Identities=27% Similarity=0.291 Sum_probs=55.6
Q ss_pred CeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+++.|||+|+|.+++.+|.+..+|+|+|.+|.-+.+|.+|+..+|+.+ ++++.+|++.+
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g~~n-~evv~gDA~~y 92 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPGDVN-WEVVVGDARDY 92 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCCCcc-eEEEecccccc
Confidence 799999999999999999997899999999999999999999999887 99999999754
No 101
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=98.37 E-value=2e-06 Score=80.31 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=55.6
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++.+|||+|||+|.++..++.. +.+|+++|+++.+++.++++++.+++. +++++++|+.+
T Consensus 42 ~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~-~v~~~~~d~~~ 107 (231)
T TIGR02752 42 NVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGLH-NVELVHGNAME 107 (231)
T ss_pred CCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCCC-ceEEEEechhc
Confidence 4567899999999999999999875 359999999999999999999888886 49999999865
No 102
>PRK04457 spermidine synthase; Provisional
Probab=98.37 E-value=3.7e-06 Score=81.32 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=58.8
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
..+..+|||+|||.|.++..+++. +.+|+++|++|.+++.|+++...++..++++++.+|+.+++...
T Consensus 64 ~~~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~ 133 (262)
T PRK04457 64 NPRPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH 133 (262)
T ss_pred CCCCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC
Confidence 345679999999999999988876 35999999999999999999877766667999999999998643
No 103
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=98.36 E-value=1.2e-05 Score=75.38 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=65.2
Q ss_pred HHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 87 LRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
+..+....+..+||++|+|+|.-++.+|.. +++|+++|.+|+.++.|++|++..|+.++|+++.+|+.++++.+.
T Consensus 37 L~~l~~~~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~ 114 (205)
T PF01596_consen 37 LQMLVRLTRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELA 114 (205)
T ss_dssp HHHHHHHHT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHH
T ss_pred HHHHHHhcCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHH
Confidence 444445556789999999999999999975 569999999999999999999999999999999999999999886
No 104
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.36 E-value=4.9e-06 Score=83.53 Aligned_cols=99 Identities=25% Similarity=0.399 Sum_probs=73.9
Q ss_pred EEEeCCeEEEEcc--------CceeecChHHHHHHH---HHhccCC--CCeEEEecCCcchhHHHHhhc-CC-EEEEEeC
Q 046527 61 EVKQYGATFKLDY--------SLVYWNSRLEHEHLR---IISQFRP--GETICDMFAGIGPFAIPAAQK-GC-IVFANDL 125 (380)
Q Consensus 61 ~v~E~G~~F~id~--------~~ff~n~rl~tE~~r---~i~~i~~--g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDl 125 (380)
.++|++.++.+.- ..+|+|+++...+.. .+..+.+ ..+|+|.+||+|.=||.+|.- +. +|+.+|+
T Consensus 5 ~v~EG~~~i~vP~~~~~~~~~~pVFYNP~m~~NRDlsV~~l~~~~~~~~~~v~DalsatGiRgIRya~E~~~~~v~lNDi 84 (380)
T COG1867 5 EVKEGSAKIYVPDPYKGGSKRAPVFYNPAMEFNRDLSVLVLKAFGKLLPKRVLDALSATGIRGIRYAVETGVVKVVLNDI 84 (380)
T ss_pred EeecCceEEEcCCCCCCCCCCCcceeCchhhhccchhHHHHHHhhccCCeEEeecccccchhHhhhhhhcCccEEEEccC
Confidence 3445555555532 238999987766532 1222221 679999999999999999976 44 8999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 126 NPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 126 np~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
||.|++.+++|+++|...+ ..+++.|+-.++.+.
T Consensus 85 sp~Avelik~Nv~~N~~~~-~~v~n~DAN~lm~~~ 118 (380)
T COG1867 85 SPKAVELIKENVRLNSGED-AEVINKDANALLHEL 118 (380)
T ss_pred CHHHHHHHHHHHHhcCccc-ceeecchHHHHHHhc
Confidence 9999999999999996666 677779998887653
No 105
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=98.35 E-value=3.9e-06 Score=78.84 Aligned_cols=41 Identities=17% Similarity=0.105 Sum_probs=38.5
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~ 134 (380)
.++.+|||+|||.|.-++.+|.+|..|+|+|+|+.|++.+.
T Consensus 33 ~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~ 73 (213)
T TIGR03840 33 PAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFF 73 (213)
T ss_pred CCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHH
Confidence 57789999999999999999999999999999999999864
No 106
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=98.34 E-value=2.3e-06 Score=85.23 Aligned_cols=64 Identities=16% Similarity=0.062 Sum_probs=56.4
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.++++|||+|||+|.+++.+++.. ..|+++|.++++++.|++|++.+++++ +.++++|+.+.
T Consensus 77 ~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~~n-V~~i~gD~~~~ 143 (322)
T PRK13943 77 GLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGIEN-VIFVCGDGYYG 143 (322)
T ss_pred CCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCCCc-EEEEeCChhhc
Confidence 46788999999999999999999763 369999999999999999999999875 89999987643
No 107
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=98.34 E-value=7.9e-07 Score=84.70 Aligned_cols=63 Identities=21% Similarity=0.272 Sum_probs=55.9
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
-+|.+|||+|||.|.++.++|+.|+.|+|+|+++.+++.|+..+..+++. +.+.+..+++...
T Consensus 58 l~g~~vLDvGCGgG~Lse~mAr~Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~ 120 (243)
T COG2227 58 LPGLRVLDVGCGGGILSEPLARLGASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLAS 120 (243)
T ss_pred CCCCeEEEecCCccHhhHHHHHCCCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHh
Confidence 37899999999999999999999999999999999999999999999886 5667777766543
No 108
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=98.34 E-value=2.4e-06 Score=81.74 Aligned_cols=63 Identities=24% Similarity=0.318 Sum_probs=57.8
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+|.+|||++||+|-+++.+++.. ++|+++|+|+.+++.+++-+..-++.+ ++++.+||.+.
T Consensus 49 ~~~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~L 113 (238)
T COG2226 49 IKPGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENL 113 (238)
T ss_pred CCCCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhC
Confidence 3489999999999999999999886 599999999999999999999888888 99999999865
No 109
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=98.32 E-value=3.6e-06 Score=78.14 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=55.4
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
..++.+|||+|||+|.++..+++.+..|+++|+++.+++.|+++....++.+++.+..+|.
T Consensus 61 ~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 121 (230)
T PRK07580 61 DLTGLRILDAGCGVGSLSIPLARRGAKVVASDISPQMVEEARERAPEAGLAGNITFEVGDL 121 (230)
T ss_pred CCCCCEEEEEeCCCCHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccCcEEEEcCc
Confidence 3567899999999999999999998899999999999999999998888866799999983
No 110
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=98.30 E-value=3.8e-06 Score=81.44 Aligned_cols=98 Identities=17% Similarity=0.217 Sum_probs=72.7
Q ss_pred ceEEEecCCccEEEEEeCCeEEEEccCceeecChHHHHHH--HHHh-----ccCCCCeEEEecCCcchhHHHHhhc--CC
Q 046527 48 EFEILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHL--RIIS-----QFRPGETICDMFAGIGPFAIPAAQK--GC 118 (380)
Q Consensus 48 ~~elLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~--r~i~-----~i~~g~~VLDlfcGvG~fsl~aA~~--g~ 118 (380)
.++.+-|+-++ +++.....++- +.+|..||-. .++. ...++..+||+|||+|++++.++.. -+
T Consensus 102 PlQYIlg~~~F------~~l~l~~~pgV--lIPRpETEE~V~~Vid~~~~~~~~~~~~ildlgtGSGaIslsll~~L~~~ 173 (328)
T KOG2904|consen 102 PLQYILGSQPF------GDLDLVCKPGV--LIPRPETEEWVEAVIDALNNSEHSKHTHILDLGTGSGAISLSLLHGLPQC 173 (328)
T ss_pred ChhheeccCcc------CCceEEecCCe--eecCccHHHHHHHHHHHHhhhhhcccceEEEecCCccHHHHHHHhcCCCc
Confidence 55666665543 44555555553 4566666632 2222 2345668999999999999999875 35
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 119 ~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
+|+|+|.++.|+..|.+|+..+++.+++.+++-+.
T Consensus 174 ~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~m 208 (328)
T KOG2904|consen 174 TVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIM 208 (328)
T ss_pred eEEEEeccHHHHHHHHHHHHHHhhcCceEEEeccc
Confidence 99999999999999999999999999999987654
No 111
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=98.30 E-value=2.3e-06 Score=80.83 Aligned_cols=64 Identities=14% Similarity=0.154 Sum_probs=55.8
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+.++.+|||+|||+|.++..+++. +++|+++|+++.+++.|++++...+...+++++++|+.++
T Consensus 51 ~~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~ 118 (239)
T TIGR00740 51 VTPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHV 118 (239)
T ss_pred CCCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhC
Confidence 357889999999999999999874 4699999999999999999998776666699999999754
No 112
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=98.29 E-value=4.9e-06 Score=78.45 Aligned_cols=42 Identities=17% Similarity=0.142 Sum_probs=38.9
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~ 134 (380)
+.++.+|||+|||.|.-++.+|.+|..|+|+|+++.|++.+.
T Consensus 35 ~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~ 76 (218)
T PRK13255 35 LPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFF 76 (218)
T ss_pred CCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHH
Confidence 356789999999999999999999999999999999999874
No 113
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=98.28 E-value=1.1e-05 Score=77.43 Aligned_cols=64 Identities=27% Similarity=0.351 Sum_probs=54.5
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.+|++|||+|||+|..++.+++. + .+|+++|+++.+++.|++|+..+++.+ ++++.+|+.+
T Consensus 73 ~~~~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~~~-v~~~~~d~~~ 139 (272)
T PRK11873 73 AELKPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGYTN-VEFRLGEIEA 139 (272)
T ss_pred ccCCCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCCCC-EEEEEcchhh
Confidence 35678999999999999988877764 3 379999999999999999999888864 8888888743
No 114
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=98.27 E-value=1.1e-06 Score=87.59 Aligned_cols=63 Identities=17% Similarity=0.276 Sum_probs=58.7
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+.++++|||+|||+|.+++.+|+.|+ +|+|||-+.-+ +.|++.+..|++++.|+++.+.+++.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi 121 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDI 121 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEE
Confidence 56799999999999999999999998 99999988877 99999999999999999999998776
No 115
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=98.27 E-value=3.2e-06 Score=78.28 Aligned_cols=67 Identities=19% Similarity=0.205 Sum_probs=55.4
Q ss_pred HHHHhccCCCCeEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 87 LRIISQFRPGETICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..++..+.+|.+|||+|||-|.+-..+.. +++.++|+|++++.+..+..+ | +.++++|+.+.+..+.
T Consensus 5 ~~I~~~I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~r----G----v~Viq~Dld~gL~~f~ 72 (193)
T PF07021_consen 5 QIIAEWIEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVAR----G----VSVIQGDLDEGLADFP 72 (193)
T ss_pred HHHHHHcCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHc----C----CCEEECCHHHhHhhCC
Confidence 34556789999999999999999988876 577999999999988776644 3 5689999999876553
No 116
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=98.25 E-value=2.6e-06 Score=81.16 Aligned_cols=64 Identities=23% Similarity=0.416 Sum_probs=48.6
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
...+|.+|||++||+|-++..+++. + .+|+++|+++.+++.|++.++..+..+ |+++++|+.+.
T Consensus 44 ~~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~~-i~~v~~da~~l 110 (233)
T PF01209_consen 44 GLRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQN-IEFVQGDAEDL 110 (233)
T ss_dssp T--S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT--S-EEEEE-BTTB-
T ss_pred CCCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCCC-eeEEEcCHHHh
Confidence 4678899999999999999999876 2 499999999999999999999888874 99999999764
No 117
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.23 E-value=9.3e-07 Score=78.52 Aligned_cols=59 Identities=20% Similarity=0.332 Sum_probs=50.1
Q ss_pred CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|+.++|+|||.|.+++.++..+. .|+|+|++|+|++.+.+|+....+. +.+.++|+.+
T Consensus 48 Egkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEvq--idlLqcdild 107 (185)
T KOG3420|consen 48 EGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEVQ--IDLLQCDILD 107 (185)
T ss_pred cCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhhh--hheeeeeccc
Confidence 689999999999999988877665 8999999999999999999887765 4667666543
No 118
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.23 E-value=4.1e-06 Score=80.16 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=54.1
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
...++++|||+|||+|.++..+++.+..|+++|+++.+++.++.+... ..+++++++|+.++
T Consensus 26 ~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~ 87 (253)
T TIGR00755 26 NVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKV 87 (253)
T ss_pred CCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcC
Confidence 456789999999999999999999988999999999999999988743 33589999998653
No 119
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.22 E-value=2.1e-06 Score=84.07 Aligned_cols=78 Identities=18% Similarity=0.356 Sum_probs=54.8
Q ss_pred eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---------CCEEEEEeCCHHHHHHHHHHHHHcCCCCc-
Q 046527 76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---------GCIVFANDLNPDSVHYLKINAKVNKVDNY- 145 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---------g~~V~avDlnp~Aie~a~~Na~lN~l~~r- 145 (380)
.|+.|+...+.+..+....++++|+|.+||+|.|.+.+... ...++|+|+++.++..++.|+.++++...
T Consensus 27 ~~~TP~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~ 106 (311)
T PF02384_consen 27 QFYTPREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSN 106 (311)
T ss_dssp GC---HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBG
T ss_pred eeehHHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccc
Confidence 46677765555544446677889999999999999988862 34899999999999999999998876642
Q ss_pred EEEEeccH
Q 046527 146 VRAYNMDA 153 (380)
Q Consensus 146 i~~~~~Da 153 (380)
..+..+|.
T Consensus 107 ~~i~~~d~ 114 (311)
T PF02384_consen 107 INIIQGDS 114 (311)
T ss_dssp CEEEES-T
T ss_pred cccccccc
Confidence 34666654
No 120
>PRK10742 putative methyltransferase; Provisional
Probab=98.21 E-value=9.7e-06 Score=77.93 Aligned_cols=71 Identities=17% Similarity=0.186 Sum_probs=62.4
Q ss_pred HhccCCCC--eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc------C--CCCcEEEEeccHHHHHHH
Q 046527 90 ISQFRPGE--TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN------K--VDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 90 i~~i~~g~--~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN------~--l~~ri~~~~~Da~e~l~~ 159 (380)
+..+++|. +|||++||.|..++.++..|++|+++|.+|.+...+++|++.. + +..+++++++|+.+++..
T Consensus 81 Avglk~g~~p~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~ 160 (250)
T PRK10742 81 AVGIKGDYLPDVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTD 160 (250)
T ss_pred HhCCCCCCCCEEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhh
Confidence 34567888 9999999999999999999999999999999999999999874 2 225699999999999976
Q ss_pred H
Q 046527 160 L 160 (380)
Q Consensus 160 l 160 (380)
.
T Consensus 161 ~ 161 (250)
T PRK10742 161 I 161 (250)
T ss_pred C
Confidence 4
No 121
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=98.20 E-value=2.6e-06 Score=88.49 Aligned_cols=61 Identities=31% Similarity=0.415 Sum_probs=52.9
Q ss_pred CCeEEEecCCcchhHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKG------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+.+|+|+|||+|+++..+++.+ .+|+|||.|+.|+..+++-++.|+++++|+++++|++++
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v 253 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREV 253 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTS
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCC
Confidence 5789999999999998887765 399999999999999988888999999999999999886
No 122
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=98.20 E-value=2.3e-06 Score=85.53 Aligned_cols=80 Identities=23% Similarity=0.388 Sum_probs=65.0
Q ss_pred eeecChHHHHHHHH---HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec-
Q 046527 76 VYWNSRLEHEHLRI---ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM- 151 (380)
Q Consensus 76 ff~n~rl~tE~~r~---i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~- 151 (380)
||..-.+..+..|. ++.+++|+.|||.|||||+|.+.+...|++|+|.|++..+++-++.|++.-++++ ..+...
T Consensus 175 f~~p~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~ 253 (347)
T COG1041 175 FFRPGSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVL 253 (347)
T ss_pred ccCcCCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEec
Confidence 55554444444444 3678899999999999999999999999999999999999999999999999887 444554
Q ss_pred cHHHH
Q 046527 152 DAREF 156 (380)
Q Consensus 152 Da~e~ 156 (380)
||...
T Consensus 254 Da~~l 258 (347)
T COG1041 254 DATNL 258 (347)
T ss_pred ccccC
Confidence 87654
No 123
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=98.20 E-value=1.4e-05 Score=74.04 Aligned_cols=63 Identities=27% Similarity=0.346 Sum_probs=55.6
Q ss_pred eEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 98 TICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
.+||+|||.|.|.+.+|... ..++|+|+....+..+...+...++.| +.++++|+..++..+.
T Consensus 20 l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l~N-v~~~~~da~~~l~~~~ 84 (195)
T PF02390_consen 20 LILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGLKN-VRFLRGDARELLRRLF 84 (195)
T ss_dssp EEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTTSS-EEEEES-CTTHHHHHS
T ss_pred eEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcccc-eEEEEccHHHHHhhcc
Confidence 89999999999999999874 499999999999999999999999998 9999999999988764
No 124
>PRK00811 spermidine synthase; Provisional
Probab=98.20 E-value=4.5e-05 Score=74.57 Aligned_cols=66 Identities=11% Similarity=0.001 Sum_probs=55.4
Q ss_pred CCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHc--CC--CCcEEEEeccHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVN--KV--DNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN--~l--~~ri~~~~~Da~e~l~~ 159 (380)
...++||++|||.|.++..+++. + .+|++||+++.+++.|+++.... +. +.+++++.+|+++++..
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~ 146 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE 146 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh
Confidence 45679999999999999999886 3 49999999999999999987642 22 45799999999998743
No 125
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=98.19 E-value=5e-06 Score=78.03 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=54.3
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-CC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-GC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+++|++|||+|||+|.++..+|.. |. .|+++|.++..++.|++|++..++.+ +.++.+|+...
T Consensus 68 L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~~n-v~~~~gdg~~g 135 (209)
T PF01135_consen 68 LDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGIDN-VEVVVGDGSEG 135 (209)
T ss_dssp TTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTTHS-EEEEES-GGGT
T ss_pred HhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhccCc-eeEEEcchhhc
Confidence 45899999999999999999999976 32 79999999999999999999999986 99999998643
No 126
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=98.19 E-value=6.3e-06 Score=76.51 Aligned_cols=66 Identities=24% Similarity=0.267 Sum_probs=52.1
Q ss_pred HHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 87 LRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 87 ~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+..+..+ +..++||++||.|--++.+|++|..|+|+|.|+.+++.+++-++..+++ |+....|..+
T Consensus 23 ~~a~~~~-~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~l~--i~~~~~Dl~~ 88 (192)
T PF03848_consen 23 LEAVPLL-KPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEGLD--IRTRVADLND 88 (192)
T ss_dssp HHHCTTS--SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT-T--EEEEE-BGCC
T ss_pred HHHHhhc-CCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcCce--eEEEEecchh
Confidence 3333334 4569999999999999999999999999999999999999999888886 8888888643
No 127
>PTZ00146 fibrillarin; Provisional
Probab=98.19 E-value=8.1e-05 Score=73.29 Aligned_cols=61 Identities=23% Similarity=0.199 Sum_probs=48.5
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++++|||+|||+|.++.++|... ..|+|+|+++.+.+.+..-++.. .| |.++.+|++.
T Consensus 129 ~IkpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r--~N-I~~I~~Da~~ 192 (293)
T PTZ00146 129 PIKPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR--PN-IVPIIEDARY 192 (293)
T ss_pred ccCCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc--CC-CEEEECCccC
Confidence 46899999999999999999999873 38999999998886666554321 33 7888888763
No 128
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=98.16 E-value=1.8e-06 Score=83.24 Aligned_cols=62 Identities=24% Similarity=0.243 Sum_probs=52.7
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC-----cEEEEeccHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN-----YVRAYNMDAREFI 157 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~-----ri~~~~~Da~e~l 157 (380)
|..|||+|||.|.++.++|+.|+.|+|+|.++++++.|++....+-+.+ ++++.+.|+++..
T Consensus 90 g~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~ 156 (282)
T KOG1270|consen 90 GMKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT 156 (282)
T ss_pred CceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc
Confidence 4789999999999999999999999999999999999999977665543 3667777766553
No 129
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=98.15 E-value=4.4e-05 Score=71.38 Aligned_cols=53 Identities=28% Similarity=0.335 Sum_probs=43.6
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.+|.+|||+|||+|.++..+++.. ..|+|+|+++ .+++.+ ++++++|+.+.
T Consensus 48 ~~~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~-----------~~~~~~-v~~i~~D~~~~ 103 (209)
T PRK11188 48 LFKPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILP-----------MDPIVG-VDFLQGDFRDE 103 (209)
T ss_pred cCCCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEeccc-----------ccCCCC-cEEEecCCCCh
Confidence 35789999999999999999998863 4899999998 134455 88999998764
No 130
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=98.14 E-value=6.7e-06 Score=81.73 Aligned_cols=61 Identities=31% Similarity=0.386 Sum_probs=52.4
Q ss_pred CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC----CCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV----DNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l----~~ri~~~~~Da~e 155 (380)
++.+|||+|||+|.+++.+++.|.+|+|+|+++.+++.+++++..... ...+.+..+|+.+
T Consensus 144 ~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~ 208 (315)
T PLN02585 144 AGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLES 208 (315)
T ss_pred CCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhh
Confidence 578999999999999999999999999999999999999999876421 1247888888754
No 131
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.14 E-value=9.2e-06 Score=76.18 Aligned_cols=67 Identities=16% Similarity=0.128 Sum_probs=62.0
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
+..+.+|++||++|||+|.-+..+|+...+|+++|..+...+.|++|++..|+.| |.++++|.....
T Consensus 67 ~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~n-V~v~~gDG~~G~ 133 (209)
T COG2518 67 LLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYEN-VTVRHGDGSKGW 133 (209)
T ss_pred HhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCCc-eEEEECCcccCC
Confidence 3567899999999999999999999998899999999999999999999999998 999999987553
No 132
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.13 E-value=4.7e-06 Score=79.24 Aligned_cols=70 Identities=23% Similarity=0.350 Sum_probs=59.2
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHHHHHHHHh
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~e~l~~l~ 161 (380)
.+++|++|||.|.|-|.+++.++++|+ .|+.+|.||..++.|.-|-.--++. ..++++.||+.++++.+.
T Consensus 131 ~~~~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~ 202 (287)
T COG2521 131 KVKRGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFD 202 (287)
T ss_pred ccccCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCC
Confidence 356799999999999999999999999 9999999999999988765333332 347999999999987764
No 133
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.12 E-value=9e-06 Score=78.81 Aligned_cols=90 Identities=16% Similarity=0.249 Sum_probs=75.0
Q ss_pred CCeEEEEccCceeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527 65 YGATFKLDYSLVYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDN 144 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ 144 (380)
.|..|.-|++.-+..+.+...-+...+.++++++||++|-|+|.++..+...|++|+|+|++|.++..+.+-.+--..++
T Consensus 28 ~~~kfnkd~GQHilkNp~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~ 107 (315)
T KOG0820|consen 28 GGSKFNKDFGQHILKNPLVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSG 107 (315)
T ss_pred cCcccccccchhhhcCHHHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccc
Confidence 56788888888777776554444444678999999999999999999999999999999999999999988876555568
Q ss_pred cEEEEeccHH
Q 046527 145 YVRAYNMDAR 154 (380)
Q Consensus 145 ri~~~~~Da~ 154 (380)
+.+++.+|..
T Consensus 108 kLqV~~gD~l 117 (315)
T KOG0820|consen 108 KLQVLHGDFL 117 (315)
T ss_pred eeeEEecccc
Confidence 8899988864
No 134
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=98.12 E-value=4.7e-06 Score=68.14 Aligned_cols=56 Identities=25% Similarity=0.300 Sum_probs=47.8
Q ss_pred EEEecCCcchhHHHHhhcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 99 ICDMFAGIGPFAIPAAQKG-----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 99 VLDlfcGvG~fsl~aA~~g-----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
|||+|||+|..+..++... .+++++|+++++++.++++....++ .++++++|+.++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l 61 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDL 61 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCH
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHC
Confidence 7999999999999999874 6999999999999999999988776 489999999773
No 135
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=98.11 E-value=1.7e-05 Score=80.70 Aligned_cols=85 Identities=25% Similarity=0.355 Sum_probs=62.5
Q ss_pred CceeecChHHHHHHHH------Hh----ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHc
Q 046527 74 SLVYWNSRLEHEHLRI------IS----QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 74 ~~ff~n~rl~tE~~r~------i~----~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN 140 (380)
..+|+|+.....|... +. ....+-+|||.+||+|.=|+..++- + .+|+++|+||+|++.+++|+++|
T Consensus 18 ~~vFYNP~~~~nRDlsvl~~~~~~~~~~~~~~~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N 97 (377)
T PF02005_consen 18 APVFYNPVMEFNRDLSVLAIRYLAVLKEKRKGPIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELN 97 (377)
T ss_dssp SSSS--GGGHHHHHHHHHH---HHHHHHCH-S-EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHC
T ss_pred CCcccCcchhcccceeehhHHHHHHhhhhhcCCceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhc
Confidence 4588898876665311 11 1223448999999999999999987 2 39999999999999999999999
Q ss_pred CCCC-cEEEEeccHHHHHH
Q 046527 141 KVDN-YVRAYNMDAREFIR 158 (380)
Q Consensus 141 ~l~~-ri~~~~~Da~e~l~ 158 (380)
++++ ++++.++|+..++.
T Consensus 98 ~~~~~~~~v~~~DAn~ll~ 116 (377)
T PF02005_consen 98 GLEDERIEVSNMDANVLLY 116 (377)
T ss_dssp T-SGCCEEEEES-HHHHHC
T ss_pred cccCceEEEehhhHHHHhh
Confidence 9998 79999999998774
No 136
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=98.10 E-value=1.4e-05 Score=75.83 Aligned_cols=54 Identities=19% Similarity=0.070 Sum_probs=45.2
Q ss_pred CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++.+|||+|||+|.++..++..+++|+++|+++.+++.++++.. .+.++++|+.
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~ 95 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIE 95 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcc
Confidence 46799999999999999999888999999999999999988742 1346667654
No 137
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=98.10 E-value=3.8e-05 Score=59.62 Aligned_cols=58 Identities=26% Similarity=0.345 Sum_probs=46.9
Q ss_pred eEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 98 TICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+++|+|||.|.++..++. ...+++++|+++.+++.++++...++.. ++.++.+|+.+.
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 59 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAALLAD-NVEVLKGDAEEL 59 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhccccc-ceEEEEcChhhh
Confidence 489999999999999987 4569999999999999999755544443 478888877654
No 138
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=98.06 E-value=1.1e-05 Score=77.66 Aligned_cols=64 Identities=17% Similarity=0.276 Sum_probs=52.1
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHH--cCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKV--NKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~l--N~l~~ri~~~~~Da~e 155 (380)
.+.++.+|||+|||+|.++..+++. + ++|+|+|+++++++.|+++... .+...+++++++|+.+
T Consensus 70 ~~~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~ 138 (261)
T PLN02233 70 GAKMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATD 138 (261)
T ss_pred CCCCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEccccc
Confidence 4578899999999999999999875 3 4999999999999999887642 2223358999999864
No 139
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=98.05 E-value=1.1e-05 Score=69.62 Aligned_cols=56 Identities=32% Similarity=0.358 Sum_probs=50.2
Q ss_pred eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 98 TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++||+|||+|.+++.+++.+. +|+++|.+|.+++.+++|++.|++.+ +.+++..+.
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~~-v~~~~~al~ 58 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLPN-VVLLNAAVG 58 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEEeeee
Confidence 589999999999999998765 79999999999999999999999876 888876554
No 140
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=98.05 E-value=1.8e-05 Score=77.89 Aligned_cols=70 Identities=10% Similarity=0.017 Sum_probs=56.9
Q ss_pred HHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 89 IISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
++..+.++.+|||+|||+|.++..+++. +.+|+++|+|+++++.+++++....-.-++.++++|+.+.+.
T Consensus 57 ia~~~~~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~ 129 (301)
T TIGR03438 57 IAAATGAGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLA 129 (301)
T ss_pred HHHhhCCCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhh
Confidence 4455677889999999999999999877 469999999999999999998754322247789999987643
No 141
>PRK03612 spermidine synthase; Provisional
Probab=98.04 E-value=2.4e-05 Score=82.75 Aligned_cols=67 Identities=18% Similarity=0.132 Sum_probs=55.1
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc-----CCC-CcEEEEeccHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN-----KVD-NYVRAYNMDAREFIRQ 159 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN-----~l~-~ri~~~~~Da~e~l~~ 159 (380)
..+.++|||+|||.|..+..+++.. .+|+++|+|+++++.+++|...+ .++ .+++++.+|++++++.
T Consensus 295 ~~~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~ 369 (521)
T PRK03612 295 SARPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRK 369 (521)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHh
Confidence 3567899999999999999988874 49999999999999999964332 233 4799999999988743
No 142
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=98.04 E-value=2e-05 Score=73.03 Aligned_cols=64 Identities=22% Similarity=0.262 Sum_probs=56.2
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..++.+|||+|||.|.++..++..+ .+|+++|+++.+++.+++++..+++.+.+.++.+|+.+.
T Consensus 49 ~~~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~ 115 (239)
T PRK00216 49 VRPGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEAL 115 (239)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccC
Confidence 4467899999999999999998875 699999999999999999998877776789999988653
No 143
>PRK01581 speE spermidine synthase; Validated
Probab=98.02 E-value=0.00019 Score=72.71 Aligned_cols=68 Identities=19% Similarity=0.139 Sum_probs=54.0
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHH---Hc--CC-CCcEEEEeccHHHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAK---VN--KV-DNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~---lN--~l-~~ri~~~~~Da~e~l~~ 159 (380)
.....++||++|||.|.....+++.. .+|++||+++++++.|+..-. .+ .+ +.+++++.+|+++++..
T Consensus 147 ~h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~ 222 (374)
T PRK01581 147 KVIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSS 222 (374)
T ss_pred hCCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHh
Confidence 34556799999999999888888764 499999999999999996311 22 23 36899999999998753
No 144
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=98.01 E-value=1e-05 Score=75.36 Aligned_cols=62 Identities=13% Similarity=0.072 Sum_probs=50.5
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.+..+.++.+|||+|||+|.++..++.. +.+|+|+|+|+.+++.|+++. . .+.+.++|+.+
T Consensus 36 ~~l~~~~~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~-----~-~~~~~~~d~~~ 99 (204)
T TIGR03587 36 RALNRLPKIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYL-----P-NINIIQGSLFD 99 (204)
T ss_pred HHHHhcCCCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhC-----C-CCcEEEeeccC
Confidence 33455678889999999999999999876 569999999999999999874 2 25677787654
No 145
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=98.00 E-value=2.2e-05 Score=77.01 Aligned_cols=63 Identities=17% Similarity=0.211 Sum_probs=56.8
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++.+|||+|||+|.+++.++++. .+|+++|+ |.+++.+++|+...++.++++++.+|+.+
T Consensus 146 ~~~~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~ 210 (306)
T TIGR02716 146 KLDGVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYK 210 (306)
T ss_pred CCCCCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccC
Confidence 45677899999999999999999874 58999997 89999999999999999999999999864
No 146
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=98.00 E-value=1.9e-05 Score=73.36 Aligned_cols=58 Identities=14% Similarity=0.227 Sum_probs=52.7
Q ss_pred CeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 97 ETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++|||+|||.|.++..+++.. ++|+++|+++.+++.+++++...++.++++++.+|+.
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~ 60 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSA 60 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccc
Confidence 379999999999999998763 6999999999999999999999999888999998874
No 147
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.99 E-value=2.1e-05 Score=81.61 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=52.6
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++.+|||+|||+|.+++.+++. +++|+|+|+++.+++.|++|+. +...++++.++|+.+
T Consensus 264 ~~~~~~vLDiGcG~G~~~~~la~~~~~~v~gvDiS~~~l~~A~~~~~--~~~~~v~~~~~d~~~ 325 (475)
T PLN02336 264 LKPGQKVLDVGCGIGGGDFYMAENFDVHVVGIDLSVNMISFALERAI--GRKCSVEFEVADCTK 325 (475)
T ss_pred CCCCCEEEEEeccCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHhh--cCCCceEEEEcCccc
Confidence 567889999999999999999875 6799999999999999999875 444568999998754
No 148
>PLN03075 nicotianamine synthase; Provisional
Probab=97.99 E-value=4.6e-05 Score=75.15 Aligned_cols=62 Identities=10% Similarity=0.044 Sum_probs=51.5
Q ss_pred CCCeEEEecCCcchhHH-HHhh-c--CCEEEEEeCCHHHHHHHHHHHHH-cCCCCcEEEEeccHHHH
Q 046527 95 PGETICDMFAGIGPFAI-PAAQ-K--GCIVFANDLNPDSVHYLKINAKV-NKVDNYVRAYNMDAREF 156 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl-~aA~-~--g~~V~avDlnp~Aie~a~~Na~l-N~l~~ri~~~~~Da~e~ 156 (380)
+.++|+|+|||-|+++. .++. . +.+++++|+++++++.|++++.. .++.++++|..+|+.+.
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~ 189 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPSANDVARRLVSSDPDLSKRMFFHTADVMDV 189 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHhhhccCccCCcEEEECchhhc
Confidence 67899999999887744 3432 2 34899999999999999999964 78988999999999763
No 149
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=97.92 E-value=3.5e-05 Score=76.02 Aligned_cols=66 Identities=17% Similarity=0.088 Sum_probs=57.4
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+|.+++|++||.|..+..+++.. .+|+|+|.+|++++.+++.+.. .++++++++|..++...+.
T Consensus 17 ~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l~ 85 (296)
T PRK00050 17 IKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVLA 85 (296)
T ss_pred CCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHHH
Confidence 4678899999999999999999874 5999999999999999988754 4579999999999876654
No 150
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=97.92 E-value=0.00035 Score=67.64 Aligned_cols=66 Identities=12% Similarity=-0.010 Sum_probs=54.0
Q ss_pred CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~~ 159 (380)
...++||++|||.|.++..+++.. .+|+++|+++.+++.++++....+ + ..+++++.+|++++++.
T Consensus 71 ~~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~ 141 (270)
T TIGR00417 71 PNPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLAD 141 (270)
T ss_pred CCCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHh
Confidence 345699999999999998888774 489999999999999999875432 2 24688999999998754
No 151
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=97.91 E-value=2e-05 Score=75.12 Aligned_cols=56 Identities=23% Similarity=0.294 Sum_probs=47.9
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..++.+|||+|||+|.++..++.. +++|+|+|+++.+++.|+++ .++++++|+.++
T Consensus 27 ~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~ 84 (255)
T PRK14103 27 AERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDW 84 (255)
T ss_pred CCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhC
Confidence 357889999999999999999987 56999999999999998763 267888998754
No 152
>PLN02366 spermidine synthase
Probab=97.91 E-value=0.00012 Score=72.64 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=56.3
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHc--CCC-CcEEEEeccHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVN--KVD-NYVRAYNMDAREFIRQ 159 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN--~l~-~ri~~~~~Da~e~l~~ 159 (380)
....++||++|||.|.++..+++.. .+|+.+|+++..++.+++..... +++ .+++++.+|++++++.
T Consensus 89 ~~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~ 160 (308)
T PLN02366 89 IPNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKN 160 (308)
T ss_pred CCCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhh
Confidence 3567899999999999999998874 38999999999999999987542 343 4899999999999854
No 153
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=97.91 E-value=3.4e-05 Score=73.36 Aligned_cols=58 Identities=10% Similarity=0.092 Sum_probs=49.5
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+.++.+|||+|||+|.++..++.. +++|+|+|+++.+++.++++. . ++.++.+|+.++
T Consensus 29 ~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~-----~-~~~~~~~d~~~~ 88 (258)
T PRK01683 29 LENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL-----P-DCQFVEADIASW 88 (258)
T ss_pred CcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC-----C-CCeEEECchhcc
Confidence 467889999999999999999976 469999999999999999874 2 378888998754
No 154
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=97.90 E-value=3e-05 Score=74.88 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=51.3
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.++.+|||+|||+|.++..++.. +++|+++|+++.+++.|+++... .+++.+.++|+.
T Consensus 49 ~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~---~~~i~~~~~D~~ 109 (263)
T PTZ00098 49 ELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD---KNKIEFEANDIL 109 (263)
T ss_pred CCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc---CCceEEEECCcc
Confidence 4578899999999999999988864 67999999999999999988653 345889988875
No 155
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=97.89 E-value=5.3e-05 Score=70.18 Aligned_cols=62 Identities=19% Similarity=0.218 Sum_probs=55.4
Q ss_pred CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.+.+|||+|||+|.++..+++.+..|+++|+++.+++.+++++..+++. .+.+..+|+.++.
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~ 106 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPLL-KIEYRCTSVEDLA 106 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCCC-ceEEEeCCHHHhh
Confidence 4789999999999999999988889999999999999999999888775 3788999987764
No 156
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=97.89 E-value=0.00014 Score=69.25 Aligned_cols=64 Identities=20% Similarity=0.214 Sum_probs=59.5
Q ss_pred CeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 97 ETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
.++||+|||.|.|.+.+|+..- ..+|||+....+..|..-+...++.| +.++++||.+++..+.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~N-lri~~~DA~~~l~~~~ 115 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLKN-LRLLCGDAVEVLDYLI 115 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCCc-EEEEcCCHHHHHHhcC
Confidence 4899999999999999999864 89999999999999999999999986 9999999999998875
No 157
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=97.86 E-value=7.6e-05 Score=74.33 Aligned_cols=63 Identities=16% Similarity=0.125 Sum_probs=50.0
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+|.+|||+|||.|.++..++..|+ .|+|+|.++.++..++......+...++.++.+|+.+.
T Consensus 121 l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~l 184 (322)
T PRK15068 121 LKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQL 184 (322)
T ss_pred CCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHC
Confidence 4688999999999999999998876 79999999998876554443333344589999988654
No 158
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=97.86 E-value=5.1e-05 Score=77.35 Aligned_cols=60 Identities=23% Similarity=0.305 Sum_probs=51.6
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+|.+|||+|||+|.+++.+++. +++|+|+|+++++++.+++++. ++ .+++..+|+.+
T Consensus 164 ~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~--~l--~v~~~~~D~~~ 224 (383)
T PRK11705 164 QLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCA--GL--PVEIRLQDYRD 224 (383)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhc--cC--eEEEEECchhh
Confidence 4578999999999999999999975 7799999999999999999984 33 27788888764
No 159
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=97.85 E-value=2.5e-05 Score=77.75 Aligned_cols=62 Identities=19% Similarity=0.245 Sum_probs=56.5
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..|++|||+|||+|.++..+|+.|+ +|+|||-+. +.++|+.=++-|++.+||.++.|.+++.
T Consensus 176 F~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEAS~-MAqyA~~Lv~~N~~~~rItVI~GKiEdi 238 (517)
T KOG1500|consen 176 FQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEASE-MAQYARKLVASNNLADRITVIPGKIEDI 238 (517)
T ss_pred cCCcEEEEecCCccHHHHHHHHhCcceEEEEehhH-HHHHHHHHHhcCCccceEEEccCccccc
Confidence 4688999999999999999999987 999999764 7789999999999999999999998775
No 160
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=97.84 E-value=0.00011 Score=68.68 Aligned_cols=63 Identities=17% Similarity=0.159 Sum_probs=55.7
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
..++..|||+|||+|.++..+++.+++|+++|+++.+++.+++++..+++ .+.+..+|+.++.
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~ 108 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELA 108 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhh
Confidence 34688999999999999999999988999999999999999999988776 3788888887765
No 161
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=97.83 E-value=4.6e-05 Score=69.16 Aligned_cols=63 Identities=25% Similarity=0.329 Sum_probs=45.5
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNK--VDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~--l~~ri~~~~~Da~e 155 (380)
...++.+||+||||+|..|+.+++. +++|+.-|.++ +++.++.|++.|+ ...++.+...|..+
T Consensus 42 ~~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~ 108 (173)
T PF10294_consen 42 ELFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGD 108 (173)
T ss_dssp GGTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS
T ss_pred hhcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecC
Confidence 4567899999999999999999998 56999999999 9999999999998 56668877766543
No 162
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=97.82 E-value=0.00016 Score=69.65 Aligned_cols=81 Identities=12% Similarity=0.066 Sum_probs=68.4
Q ss_pred hHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 81 RLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 81 rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
......+..+....+-++||++|+++|.-++.+|.. +.+|+++|.+++.++.|++|++..|+.++|+++.+|+.+.+
T Consensus 65 ~~~g~lL~~l~~~~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L 144 (247)
T PLN02589 65 ADEGQFLNMLLKLINAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVL 144 (247)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHH
Confidence 333344444455556779999999999999988864 45999999999999999999999999999999999999999
Q ss_pred HHHh
Q 046527 158 RQLM 161 (380)
Q Consensus 158 ~~l~ 161 (380)
.++.
T Consensus 145 ~~l~ 148 (247)
T PLN02589 145 DQMI 148 (247)
T ss_pred HHHH
Confidence 9876
No 163
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=97.82 E-value=1.9e-05 Score=62.11 Aligned_cols=53 Identities=25% Similarity=0.308 Sum_probs=43.7
Q ss_pred EEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 100 CDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 100 LDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
||+|||.|.++..+++. +.+|+++|.++.+++.++++....+ +.+.++|+.++
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~~----~~~~~~d~~~l 54 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNEG----VSFRQGDAEDL 54 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTST----EEEEESBTTSS
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhcccccC----chheeehHHhC
Confidence 79999999999999999 7799999999999999999875443 55888886554
No 164
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=97.73 E-value=0.00077 Score=70.61 Aligned_cols=65 Identities=25% Similarity=0.213 Sum_probs=58.4
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
...+|++|||+|||.|.=+.++|..- ..|+|+|+++.-++.+++|++..|+.+ +.+.+.|+..+.
T Consensus 110 ~~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~n-v~v~~~D~~~~~ 177 (470)
T PRK11933 110 DDNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVSN-VALTHFDGRVFG 177 (470)
T ss_pred CCCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCe-EEEEeCchhhhh
Confidence 56799999999999999999998752 389999999999999999999999987 899999988653
No 165
>PRK08317 hypothetical protein; Provisional
Probab=97.72 E-value=0.00017 Score=66.36 Aligned_cols=63 Identities=22% Similarity=0.152 Sum_probs=51.4
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.++.+|||+|||+|.++..++... ++|+++|+++.+++.++++.. .....+.+..+|+.+
T Consensus 15 ~~~~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~--~~~~~~~~~~~d~~~ 80 (241)
T PRK08317 15 LAVQPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAA--GLGPNVEFVRGDADG 80 (241)
T ss_pred cCCCCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhh--CCCCceEEEeccccc
Confidence 356788999999999999999998763 599999999999999999833 223358888888754
No 166
>PRK04148 hypothetical protein; Provisional
Probab=97.71 E-value=6e-05 Score=66.20 Aligned_cols=54 Identities=20% Similarity=0.134 Sum_probs=45.9
Q ss_pred CCCeEEEecCCcch-hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 95 PGETICDMFAGIGP-FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 95 ~g~~VLDlfcGvG~-fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
++.+|+|+|||.|. ++..+++.|..|+|+|+||.+++.++++. +.++.+|+.+-
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p 70 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNP 70 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCC
Confidence 45789999999996 99999999999999999999999887762 46788887643
No 167
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=97.70 E-value=0.00011 Score=70.01 Aligned_cols=55 Identities=22% Similarity=0.259 Sum_probs=42.8
Q ss_pred ecChHHHHHHHHHhcc---CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHH
Q 046527 78 WNSRLEHEHLRIISQF---RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHY 132 (380)
Q Consensus 78 ~n~rl~tE~~r~i~~i---~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~ 132 (380)
+.+|-......++..+ .+|.+|||+|||+|.|+.++++.|+ +|+|+|+++.++..
T Consensus 55 ~vsr~~~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~ 113 (228)
T TIGR00478 55 FVSRGGEKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAE 113 (228)
T ss_pred hhhhhHHHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHH
Confidence 4455444444555443 4688999999999999999999976 89999999987765
No 168
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=97.70 E-value=0.00017 Score=66.09 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=51.6
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..++.+|||+|||.|.++..+++... +++++|+++.+++.++++.. ..+++.++.+|+.+.
T Consensus 37 ~~~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~ 100 (223)
T TIGR01934 37 VFKGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEAL 100 (223)
T ss_pred cCCCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcC
Confidence 34788999999999999999987753 89999999999999999875 344588999988653
No 169
>PLN02823 spermine synthase
Probab=97.67 E-value=0.00098 Score=66.97 Aligned_cols=64 Identities=22% Similarity=0.224 Sum_probs=54.5
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIR 158 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~ 158 (380)
..++||.+|+|.|..+..+++.. .+|++||+++..++.+++....++ + +.+++++.+|++++++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~ 171 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELE 171 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHh
Confidence 45789999999999999888753 489999999999999999986553 2 3689999999999884
No 170
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=97.66 E-value=0.00023 Score=70.87 Aligned_cols=63 Identities=16% Similarity=0.046 Sum_probs=48.8
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+|++|||+|||+|.++..++..|+ .|+|+|.++.++..++...+..+...++.+..+|+.+
T Consensus 119 ~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~ 182 (314)
T TIGR00452 119 PLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQ 182 (314)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHH
Confidence 45689999999999999999988886 7999999999988765443332323457888887654
No 171
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=97.65 E-value=0.00011 Score=70.82 Aligned_cols=63 Identities=22% Similarity=0.309 Sum_probs=53.9
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+.+++.|+|+|+|.|.++..++..+.+|+++|+++..++.+++... ...+++++++|+.++
T Consensus 26 ~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~---~~~~~~vi~~D~l~~ 88 (262)
T PF00398_consen 26 LDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFA---SNPNVEVINGDFLKW 88 (262)
T ss_dssp HTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCT---TCSSEEEEES-TTTS
T ss_pred cCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhh---hcccceeeecchhcc
Confidence 345689999999999999999999999999999999999999998765 234699999998753
No 172
>PRK05785 hypothetical protein; Provisional
Probab=97.63 E-value=0.00013 Score=68.88 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=38.7
Q ss_pred CCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~N 136 (380)
.++.+|||+|||+|.++..+++. +.+|+|+|+|+++++.|++.
T Consensus 50 ~~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~ 93 (226)
T PRK05785 50 GRPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVA 93 (226)
T ss_pred CCCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhc
Confidence 45789999999999999999988 57999999999999998763
No 173
>PRK06922 hypothetical protein; Provisional
Probab=97.61 E-value=0.00025 Score=76.56 Aligned_cols=64 Identities=19% Similarity=0.198 Sum_probs=53.3
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+.++.+|||+|||+|.++..++.. +.+|+|+|+++.+++.|+.++..++. ++.++++|+.++
T Consensus 414 ~d~~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g~--~ie~I~gDa~dL 479 (677)
T PRK06922 414 LDYIKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEGR--SWNVIKGDAINL 479 (677)
T ss_pred hhhcCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCC--CeEEEEcchHhC
Confidence 34457889999999999999888865 45999999999999999999876553 478899998763
No 174
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=97.61 E-value=0.00018 Score=67.37 Aligned_cols=61 Identities=20% Similarity=0.237 Sum_probs=53.3
Q ss_pred EEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 99 ICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 99 VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
|+|+||--|.+++.+.+.|. +|+|+|+++..++.|++|++.+++.+++++..+|..+.+..
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~ 63 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKP 63 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--G
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCC
Confidence 78999999999999999986 89999999999999999999999999999999999887643
No 175
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=97.60 E-value=0.0002 Score=66.06 Aligned_cols=63 Identities=17% Similarity=0.226 Sum_probs=56.3
Q ss_pred cCCCC-eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGE-TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~-~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.+.. +|||||||-|.+-..+++.|- ..+|+|-++.|++.|+.-++.++++|.|++.+.|+.+
T Consensus 64 v~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~GvDYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~ 129 (227)
T KOG1271|consen 64 VSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGVDYSEKAVELAQNIAERDGFSNEIRFQQLDITD 129 (227)
T ss_pred hcccccceeeccCCchHHHHHHHHhcCCCCccccccCHHHHHHHHHHHHhcCCCcceeEEEeeccC
Confidence 34443 999999999999999999875 6999999999999999999999999999999999865
No 176
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=97.59 E-value=0.00045 Score=63.67 Aligned_cols=62 Identities=23% Similarity=0.311 Sum_probs=53.7
Q ss_pred CCeEEEecCCcchhHHHHhhc-C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQK-G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~-g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
.+.++++|||+|..+-++++. + ...++.|+||.|++...+.++.|+.. +.+++.|....|+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~~~--~~~V~tdl~~~l~~ 108 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNRVH--IDVVRTDLLSGLRN 108 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcCCc--cceeehhHHhhhcc
Confidence 678999999999999999976 2 37899999999999999999999975 67888888776643
No 177
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=97.59 E-value=0.00013 Score=76.96 Aligned_cols=66 Identities=11% Similarity=0.095 Sum_probs=48.4
Q ss_pred eeecChHHHHHH-HHHh-ccC-----CCCeEEEecCCcchhHHHHhhcC----------CEEEEEeCCHHHHHHHHHHHH
Q 046527 76 VYWNSRLEHEHL-RIIS-QFR-----PGETICDMFAGIGPFAIPAAQKG----------CIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 76 ff~n~rl~tE~~-r~i~-~i~-----~g~~VLDlfcGvG~fsl~aA~~g----------~~V~avDlnp~Aie~a~~Na~ 138 (380)
-|+.+...++.+ ..+. ... ...+|||.+||+|.|.+.++... ..++|+|+++.+++.++.|+.
T Consensus 5 qfyTP~~ia~~mv~~~~~~~~~~~~~~~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~ 84 (524)
T TIGR02987 5 TFFTPPDIAKAMVANLVNEIGKNDKSTKTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLG 84 (524)
T ss_pred ccCCcHHHHHHHHHHHhhhcchhhcccceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHh
Confidence 355666555544 3332 221 34589999999999999988542 378999999999999999987
Q ss_pred HcC
Q 046527 139 VNK 141 (380)
Q Consensus 139 lN~ 141 (380)
..+
T Consensus 85 ~~~ 87 (524)
T TIGR02987 85 EFA 87 (524)
T ss_pred hcC
Confidence 665
No 178
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=97.56 E-value=0.00025 Score=64.91 Aligned_cols=60 Identities=18% Similarity=0.190 Sum_probs=47.7
Q ss_pred HHhccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 89 IISQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+...+.++.+|||+|||+|.++..++.. +..++++|+++++++.++.+ .++++++|+.+.
T Consensus 7 i~~~i~~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~ 67 (194)
T TIGR02081 7 ILNLIPPGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEG 67 (194)
T ss_pred HHHhcCCCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhc
Confidence 3344667889999999999999988765 45899999999999887642 257888888654
No 179
>PRK06202 hypothetical protein; Provisional
Probab=97.56 E-value=0.00023 Score=66.83 Aligned_cols=56 Identities=27% Similarity=0.242 Sum_probs=44.1
Q ss_pred CCCCeEEEecCCcchhHHHHhhc----C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK----G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~----g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
.++.+|||+|||+|.++..++.. | .+|+|+|+++.+++.|+++...++ +.+..+|+
T Consensus 59 ~~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~~----~~~~~~~~ 120 (232)
T PRK06202 59 DRPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRPG----VTFRQAVS 120 (232)
T ss_pred CCCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccCC----CeEEEEec
Confidence 56779999999999999988752 3 499999999999999998875544 34444444
No 180
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=97.52 E-value=0.00076 Score=63.94 Aligned_cols=76 Identities=16% Similarity=0.146 Sum_probs=66.5
Q ss_pred HHHHHHHhccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEe-ccHHHHHHH
Q 046527 84 HEHLRIISQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYN-MDAREFIRQ 159 (380)
Q Consensus 84 tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~-~Da~e~l~~ 159 (380)
...++.+....+.++||++|++.|.-++.+|.. ..+++++|.|++.++.|++|++..|++++|+++. +|+.+.+..
T Consensus 48 g~~L~~L~~~~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~ 127 (219)
T COG4122 48 GALLRLLARLSGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSR 127 (219)
T ss_pred HHHHHHHHHhcCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHh
Confidence 344566667778899999999999999999875 2389999999999999999999999999999999 699998876
No 181
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=97.52 E-value=0.00032 Score=60.70 Aligned_cols=41 Identities=27% Similarity=0.546 Sum_probs=38.4
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHY 132 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~ 132 (380)
...++.+|||+|||.|.++..++..|.+|+++|+++.+++.
T Consensus 19 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~ 59 (161)
T PF13489_consen 19 RLKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK 59 (161)
T ss_dssp CTTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH
T ss_pred ccCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh
Confidence 36788999999999999999999999999999999999998
No 182
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=97.52 E-value=0.00028 Score=73.24 Aligned_cols=58 Identities=24% Similarity=0.252 Sum_probs=48.0
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.++. .++...+++++++|+.
T Consensus 36 ~~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~---~~~~~~~i~~~~~d~~ 93 (475)
T PLN02336 36 YEGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNES---INGHYKNVKFMCADVT 93 (475)
T ss_pred cCCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHH---HhccCCceEEEEeccc
Confidence 357799999999999999999988899999999999987654 3443345888888885
No 183
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=97.51 E-value=0.00081 Score=71.03 Aligned_cols=65 Identities=12% Similarity=0.159 Sum_probs=56.2
Q ss_pred CCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
.+..+||+|||.|.|.+.+|... ..++|+|+....+..+.+.+...++.| +.++++|+..+...+
T Consensus 347 ~~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l~N-~~~~~~~~~~~~~~~ 413 (506)
T PRK01544 347 KRKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNITN-FLLFPNNLDLILNDL 413 (506)
T ss_pred CCceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCCCe-EEEEcCCHHHHHHhc
Confidence 46799999999999999999885 489999999999999999998899987 889999876655443
No 184
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=97.43 E-value=0.00047 Score=69.38 Aligned_cols=58 Identities=16% Similarity=0.137 Sum_probs=48.8
Q ss_pred CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.++.+|||+|||+|.+++.+++. +.+|+++|.++.+++.|+++...+ +++++.+|+.+
T Consensus 112 ~~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~~----~i~~i~gD~e~ 171 (340)
T PLN02490 112 DRNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPLK----ECKIIEGDAED 171 (340)
T ss_pred CCCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhcc----CCeEEeccHHh
Confidence 46789999999999999988875 359999999999999999987532 36788888864
No 185
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=97.41 E-value=0.00054 Score=63.22 Aligned_cols=56 Identities=16% Similarity=0.093 Sum_probs=46.8
Q ss_pred CCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+|||+|||+|.++..++..+. +|+++|+++.+++.++.+.. .++.++.+|+.+
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~ 91 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEK 91 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhh
Confidence 457899999999999999998764 78999999999999887653 247788888764
No 186
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=97.40 E-value=0.0001 Score=68.59 Aligned_cols=58 Identities=33% Similarity=0.412 Sum_probs=51.7
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
-.|++|||+|+|+|.-++.+++.|+ .|++.|+.|.+...++.|++.|++. +.+...|.
T Consensus 78 VrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~angv~--i~~~~~d~ 136 (218)
T COG3897 78 VRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAANGVS--ILFTHADL 136 (218)
T ss_pred cccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhhccce--eEEeeccc
Confidence 3689999999999999999999987 8999999999999999999999975 56666554
No 187
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.38 E-value=0.0025 Score=62.42 Aligned_cols=71 Identities=32% Similarity=0.286 Sum_probs=61.3
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
+....+|+.|||+||+-|.=+.++|..- ..|+|+|+++.-+..++.|++..|+.+ +.+.+.|+........
T Consensus 80 ~L~~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~~-v~~~~~D~~~~~~~~~ 153 (283)
T PF01189_consen 80 ALDPQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVFN-VIVINADARKLDPKKP 153 (283)
T ss_dssp HHTTTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-SS-EEEEESHHHHHHHHHH
T ss_pred cccccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCce-EEEEeecccccccccc
Confidence 3467889999999999999999988752 499999999999999999999999987 8888899998876554
No 188
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=97.34 E-value=0.0062 Score=58.50 Aligned_cols=67 Identities=16% Similarity=0.130 Sum_probs=54.8
Q ss_pred CCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCC---CCcEEEEeccHHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKV---DNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l---~~ri~~~~~Da~e~l~~l 160 (380)
...++||-+|.|.|..+-.+.+.. .+|++||++|..++.+++-...... +.|++++.+|++.++++.
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~ 146 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKET 146 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTS
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhc
Confidence 467899999999999999998875 4999999999999999997665322 368999999999998653
No 189
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=97.32 E-value=0.00029 Score=64.19 Aligned_cols=55 Identities=27% Similarity=0.354 Sum_probs=43.3
Q ss_pred HHhccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 89 IISQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
....+.+|++|||+|||+|.++..++... .+|+++|+++.. +..+ ++++++|+.+
T Consensus 26 ~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~-----------~~~~-i~~~~~d~~~ 83 (188)
T TIGR00438 26 KFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK-----------PIEN-VDFIRGDFTD 83 (188)
T ss_pred HhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc-----------cCCC-ceEEEeeCCC
Confidence 34556889999999999999999888763 379999999954 2233 7788888754
No 190
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.32 E-value=0.00037 Score=63.69 Aligned_cols=43 Identities=26% Similarity=0.404 Sum_probs=36.6
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
-.+|+.|||.|||+|+.++++.+.|.+.+|+|+++..++.|++
T Consensus 189 t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 189 TNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp S-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred hccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 3679999999999999999999999999999999999999874
No 191
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=97.25 E-value=0.00059 Score=65.91 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=44.4
Q ss_pred CCCeEEEecCCcchhHHHHhhcC-----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG-----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g-----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+|||+|||+|.++..++... ..|+|+|+|+.+++.|+++. . .+.+..+|+.+
T Consensus 85 ~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~-----~-~~~~~~~d~~~ 144 (272)
T PRK11088 85 KATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY-----P-QVTFCVASSHR 144 (272)
T ss_pred CCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC-----C-CCeEEEeeccc
Confidence 45789999999999999887642 37999999999999997652 2 36788888754
No 192
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=97.17 E-value=0.00063 Score=64.76 Aligned_cols=63 Identities=14% Similarity=0.104 Sum_probs=49.9
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH-------cC----CCCcEEEEeccHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV-------NK----VDNYVRAYNMDAREF 156 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l-------N~----l~~ri~~~~~Da~e~ 156 (380)
.++.+||+.+||.|.-++.+|..|..|+|+|+++.|++.+.+.... +. -...++++++|..++
T Consensus 42 ~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gD~f~l 115 (226)
T PRK13256 42 NDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNTINYEVIHGNDYKLYKGDDIEIYVADIFNL 115 (226)
T ss_pred CCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcCCCcceecccccceeccCceEEEEccCcCC
Confidence 4578999999999999999999999999999999999998652100 00 013588888888764
No 193
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=97.16 E-value=0.00059 Score=63.62 Aligned_cols=58 Identities=17% Similarity=0.177 Sum_probs=46.6
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
-..+||+|||.|.|+..+|.++.+++++|+++.|++.|++... +..+ |++.++|+.++
T Consensus 44 y~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~--~~~~-V~~~~~dvp~~ 101 (201)
T PF05401_consen 44 YRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLA--GLPH-VEWIQADVPEF 101 (201)
T ss_dssp EEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTT--T-SS-EEEEES-TTT-
T ss_pred cceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcC--CCCC-eEEEECcCCCC
Confidence 3689999999999999999998899999999999999998875 4554 99999999765
No 194
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=97.13 E-value=0.00081 Score=63.67 Aligned_cols=59 Identities=14% Similarity=0.151 Sum_probs=49.6
Q ss_pred CCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
..-..|.|+|||.|.-+-.++++ ++.|+|+|.|+++++.|+.- +.+ ++|..+|++.+-.
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~r-----lp~-~~f~~aDl~~w~p 89 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQR-----LPD-ATFEEADLRTWKP 89 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHh-----CCC-CceecccHhhcCC
Confidence 34579999999999999999987 57999999999999998543 344 7899999987743
No 195
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=97.11 E-value=0.0013 Score=57.52 Aligned_cols=62 Identities=18% Similarity=0.141 Sum_probs=50.8
Q ss_pred CCCCeEEEecCCcchhHHHHhh-----c-CCEEEEEeCCHHHHHHHHHHHHHcC--CCCcEEEEeccHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQ-----K-GCIVFANDLNPDSVHYLKINAKVNK--VDNYVRAYNMDARE 155 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~-----~-g~~V~avDlnp~Aie~a~~Na~lN~--l~~ri~~~~~Da~e 155 (380)
.+...|+|+|||-|.++..++. . +.+|+++|.++..++.+.+..+..+ +..++.+..++..+
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 93 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIAD 93 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhh
Confidence 5678999999999999999998 3 5699999999999999999988776 54456666655543
No 196
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=97.11 E-value=0.002 Score=62.36 Aligned_cols=65 Identities=23% Similarity=0.208 Sum_probs=55.2
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC--------CEEEEEeCCHHHHHHHHHHHHHcCCCCc--EEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG--------CIVFANDLNPDSVHYLKINAKVNKVDNY--VRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g--------~~V~avDlnp~Aie~a~~Na~lN~l~~r--i~~~~~Da~e~ 156 (380)
...++..|||++||+|-++..+.+.. .+|+..|+||+++..+++-++.-++... +.++++||++.
T Consensus 97 ~p~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~L 171 (296)
T KOG1540|consen 97 GPGKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDL 171 (296)
T ss_pred CCCCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccC
Confidence 34567899999999999999888651 4899999999999999999987777654 89999999764
No 197
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=97.10 E-value=0.0012 Score=63.82 Aligned_cols=43 Identities=14% Similarity=0.180 Sum_probs=34.5
Q ss_pred CCCeEEEecCCcch----hHHHHhhc-------CCEEEEEeCCHHHHHHHHHHH
Q 046527 95 PGETICDMFAGIGP----FAIPAAQK-------GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 95 ~g~~VLDlfcGvG~----fsl~aA~~-------g~~V~avDlnp~Aie~a~~Na 137 (380)
++.+|||+|||+|- +++.++.. +.+|+|+|+|+.+++.|++.+
T Consensus 99 ~~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~ 152 (264)
T smart00138 99 RRVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGI 152 (264)
T ss_pred CCEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCC
Confidence 45699999999995 55555543 248999999999999999864
No 198
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=97.07 E-value=0.00063 Score=64.29 Aligned_cols=64 Identities=23% Similarity=0.213 Sum_probs=49.2
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH-HHHHcC---C-------CCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI-NAKVNK---V-------DNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~-Na~lN~---l-------~~ri~~~~~Da~e~ 156 (380)
..++.+||+.+||.|.-.+.+|..|..|+|+|+++.|++.+.+ |..... + .++|+++++|.+++
T Consensus 35 ~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~~~~~~~~~~~~~~~~~i~~~~gDfF~l 109 (218)
T PF05724_consen 35 LKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLEPTVTSVGGFKRYQAGRITIYCGDFFEL 109 (218)
T ss_dssp TSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTEEECTTCTTEEEETTSSEEEEES-TTTG
T ss_pred CCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccCCCcccccceeeecCCceEEEEcccccC
Confidence 5677899999999999999999999999999999999999843 321111 0 13588999998874
No 199
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.0084 Score=58.56 Aligned_cols=64 Identities=13% Similarity=0.185 Sum_probs=58.3
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
..+.+|.+||+.|+|+|.++.++++.- .+++..|....-++.|++-.+..++.+.+++...|+-
T Consensus 101 L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc 167 (314)
T KOG2915|consen 101 LEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVC 167 (314)
T ss_pred hcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecc
Confidence 467899999999999999999999875 3999999999999999999999999988999987763
No 200
>PRK11524 putative methyltransferase; Provisional
Probab=97.05 E-value=0.0011 Score=64.72 Aligned_cols=51 Identities=24% Similarity=0.267 Sum_probs=45.1
Q ss_pred HHHhcc-CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 88 RIISQF-RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 88 r~i~~i-~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
+++... .+|++|||.|||+|+-++.+.+.|.+.+|+|++++.++.|++-+.
T Consensus 200 rlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 200 RIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred HHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 444433 589999999999999999999999999999999999999998874
No 201
>PHA01634 hypothetical protein
Probab=97.03 E-value=0.0015 Score=57.16 Aligned_cols=51 Identities=14% Similarity=-0.020 Sum_probs=47.1
Q ss_pred CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCc
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNY 145 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~r 145 (380)
.+++|+|+|+++|.-++..+.+|+ .|+++|.+|...+.+++|++.|.+-++
T Consensus 28 k~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nnI~DK 79 (156)
T PHA01634 28 YQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFNICDK 79 (156)
T ss_pred cCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhheeeec
Confidence 588999999999999999999988 899999999999999999999976553
No 202
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.00 E-value=0.0055 Score=58.39 Aligned_cols=71 Identities=17% Similarity=0.097 Sum_probs=63.1
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT 162 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~ 162 (380)
++-..++++|+|..+|.=++..|.. +.+|+++|+|+++++++.+=.+..|+..+|+++.+++.+.|.++.+
T Consensus 70 ~~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~l~~ 143 (237)
T KOG1663|consen 70 RLLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDELLA 143 (237)
T ss_pred HHhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHHHHh
Confidence 3445789999999999888877754 5699999999999999999999999999999999999999999875
No 203
>PRK13699 putative methylase; Provisional
Probab=96.93 E-value=0.0019 Score=61.41 Aligned_cols=47 Identities=21% Similarity=0.206 Sum_probs=42.4
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l 139 (380)
-.+|+.|||.|||+|..++.+.+.|.+.+|+|++++.++.+.+.++.
T Consensus 161 s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 161 THPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 35899999999999999999999999999999999999998877643
No 204
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=96.92 E-value=9.7e-05 Score=59.78 Aligned_cols=45 Identities=16% Similarity=0.138 Sum_probs=36.6
Q ss_pred EEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCC
Q 046527 100 CDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDN 144 (380)
Q Consensus 100 LDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ 144 (380)
||+|||+|.++..++.. ..+++++|+|+.+++.+++........+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~ 47 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDN 47 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcc
Confidence 79999999999999988 5699999999999998888888776543
No 205
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=96.91 E-value=0.0035 Score=63.36 Aligned_cols=84 Identities=27% Similarity=0.310 Sum_probs=68.1
Q ss_pred eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527 76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~ 151 (380)
.|+.+-.+......+....+|++|||+||+-|+=+.++|... ..|+|+|.++.=++.+++|++..|+.+ +.+++.
T Consensus 137 ~~~vQd~sS~l~a~~L~p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~ 215 (355)
T COG0144 137 LIYVQDEASQLPALVLDPKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNK 215 (355)
T ss_pred EEEEcCHHHHHHHHHcCCCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEec
Confidence 444444444444445677899999999999999999999763 468999999999999999999999998 889999
Q ss_pred cHHHHHHHH
Q 046527 152 DAREFIRQL 160 (380)
Q Consensus 152 Da~e~l~~l 160 (380)
|++.+....
T Consensus 216 d~~~~~~~~ 224 (355)
T COG0144 216 DARRLAELL 224 (355)
T ss_pred ccccccccc
Confidence 988765544
No 206
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.77 E-value=0.003 Score=59.76 Aligned_cols=70 Identities=14% Similarity=0.165 Sum_probs=62.6
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.++..+..+..++|+||--|.+++.+.+.+. .+++.|+++..++.|.+|+..|++.+++++..+|....+
T Consensus 9 ~va~~V~~~~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l 80 (226)
T COG2384 9 TVANLVKQGARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVL 80 (226)
T ss_pred HHHHHHHcCCceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCcccc
Confidence 3445677888899999999999999998864 899999999999999999999999999999999996554
No 207
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=96.71 E-value=0.0024 Score=65.78 Aligned_cols=54 Identities=19% Similarity=0.209 Sum_probs=50.6
Q ss_pred eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec
Q 046527 98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM 151 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~ 151 (380)
.|||+|+|+|.+++.+++.|+ .|+|+|.-..+.++|++-...||++++|.+++.
T Consensus 69 ~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInk 123 (636)
T KOG1501|consen 69 FVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINK 123 (636)
T ss_pred EEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeecc
Confidence 589999999999999999988 999999999999999999999999988888764
No 208
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=96.69 E-value=0.012 Score=58.46 Aligned_cols=77 Identities=16% Similarity=0.196 Sum_probs=61.6
Q ss_pred HHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 82 LEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 82 l~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
+-.|.+..+ ...+|.+++|.-+|-|.-+..+++.. ++|+|+|.+|.|++.+++.++. ..+++++++++-.++...
T Consensus 8 ll~Evl~~L-~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~--~~~R~~~i~~nF~~l~~~ 84 (305)
T TIGR00006 8 LLDEVVEGL-NIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSD--FEGRVVLIHDNFANFFEH 84 (305)
T ss_pred hHHHHHHhc-CcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhh--cCCcEEEEeCCHHHHHHH
Confidence 333444433 35678899999999999999999762 6999999999999999998764 356799999999888766
Q ss_pred Hh
Q 046527 160 LM 161 (380)
Q Consensus 160 l~ 161 (380)
+.
T Consensus 85 l~ 86 (305)
T TIGR00006 85 LD 86 (305)
T ss_pred HH
Confidence 64
No 209
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=96.61 E-value=0.0062 Score=60.29 Aligned_cols=56 Identities=18% Similarity=0.229 Sum_probs=41.0
Q ss_pred CCeEEEecCCcchh-HHHHhh-cCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEec
Q 046527 96 GETICDMFAGIGPF-AIPAAQ-KGCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYNM 151 (380)
Q Consensus 96 g~~VLDlfcGvG~f-sl~aA~-~g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~~ 151 (380)
.-++||+|+|.-.+ .+..++ .+.+++|.|+++.+++.|++|++.| +++++|+++..
T Consensus 103 ~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~ 161 (299)
T PF05971_consen 103 KVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQ 161 (299)
T ss_dssp --EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE-
T ss_pred ceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEc
Confidence 35799999987644 554444 3779999999999999999999999 99999998765
No 210
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=96.59 E-value=0.0014 Score=62.65 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=46.2
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
-+++||+|||+|.++..+-....+.+|+|+|..+++.|.+. ++-+ +..++|+..|++.
T Consensus 126 F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eK----g~YD--~L~~Aea~~Fl~~ 183 (287)
T COG4976 126 FRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEK----GLYD--TLYVAEAVLFLED 183 (287)
T ss_pred cceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhc----cchH--HHHHHHHHHHhhh
Confidence 47999999999999999988888999999999999988754 3333 3556666666543
No 211
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=96.45 E-value=0.019 Score=53.02 Aligned_cols=64 Identities=23% Similarity=0.138 Sum_probs=52.9
Q ss_pred hccCCCC-eEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 91 SQFRPGE-TICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 91 ~~i~~g~-~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..+.... +++|+|+|.|.-|+++|-.. .+|+.+|.+..=+..++.-+...+++| ++++++++++
T Consensus 43 ~~~~~~~~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~n-v~v~~~R~E~ 109 (184)
T PF02527_consen 43 PFLPDFGKKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLSN-VEVINGRAEE 109 (184)
T ss_dssp GCS-CCCSEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-SS-EEEEES-HHH
T ss_pred hhhccCCceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCCC-EEEEEeeecc
Confidence 3344444 89999999999999988653 489999999999999999999999997 9999999998
No 212
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=96.44 E-value=0.0057 Score=59.16 Aligned_cols=53 Identities=30% Similarity=0.509 Sum_probs=45.7
Q ss_pred eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
+|+|||||.|.+++-+-..|. -|.|+|+++.|++..+.|.. ....+|+.++-.
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~ 55 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDP 55 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHH
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------cccccccccccc
Confidence 689999999999999998886 79999999999999999974 578889877654
No 213
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=96.37 E-value=0.017 Score=57.27 Aligned_cols=50 Identities=16% Similarity=0.148 Sum_probs=39.8
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVD 143 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~ 143 (380)
-.|++|||+|||.|.++..++..|+ .|+|+|-++..+-..+--...-|.+
T Consensus 114 L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg~~ 164 (315)
T PF08003_consen 114 LKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLGQD 164 (315)
T ss_pred cCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhCCC
Confidence 4689999999999999999999987 7999999998776644433333333
No 214
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=96.36 E-value=0.011 Score=56.11 Aligned_cols=63 Identities=21% Similarity=0.231 Sum_probs=43.0
Q ss_pred cChHHHHHH-HHHhcc-C-CCCeEEEecCCcchhHHHHhhc--C--CEEEEEeCCHHHHHHHHHHHHHcC
Q 046527 79 NSRLEHEHL-RIISQF-R-PGETICDMFAGIGPFAIPAAQK--G--CIVFANDLNPDSVHYLKINAKVNK 141 (380)
Q Consensus 79 n~rl~tE~~-r~i~~i-~-~g~~VLDlfcGvG~fsl~aA~~--g--~~V~avDlnp~Aie~a~~Na~lN~ 141 (380)
.-|+..|.. |.+... . ..-++||.|||.|.+--.++-. . ..|+|-|+|++++++|++|+.+..
T Consensus 32 PVRLAsEi~qR~l~~l~~~~p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt 101 (246)
T PF11599_consen 32 PVRLASEIFQRALHYLEGKGPYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLT 101 (246)
T ss_dssp -HHHHHHHHHHHHCTSSS-S-EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCS
T ss_pred cHHHHHHHHHHHHHhhcCCCCeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhcc
Confidence 457777765 333322 2 2348999999999986655532 2 289999999999999999998753
No 215
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=96.31 E-value=0.0052 Score=59.15 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=45.1
Q ss_pred HHHHHH-hccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHH
Q 046527 85 EHLRII-SQFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 85 E~~r~i-~~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~l 139 (380)
.+++.+ .....+..+||+||..|.+++.+|+. |+ .|+|+|+++..++.|++|++.
T Consensus 47 ~rLk~L~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~ 104 (288)
T KOG2899|consen 47 PRLKVLEKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRF 104 (288)
T ss_pred hhhhhccccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhccc
Confidence 344444 23456789999999999999999987 44 899999999999999999753
No 216
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=96.27 E-value=0.0066 Score=57.77 Aligned_cols=56 Identities=16% Similarity=0.128 Sum_probs=44.8
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
..-|||+|||+|.-+-.+...|...+|+|+||.+++.|.+ -.. +. .++.+|.-+.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~-~e~---eg--dlil~DMG~Gl 106 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVE-REL---EG--DLILCDMGEGL 106 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHH-hhh---hc--CeeeeecCCCC
Confidence 5689999999999999998889999999999999999997 222 22 35666765443
No 217
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.25 E-value=0.0063 Score=63.52 Aligned_cols=65 Identities=25% Similarity=0.353 Sum_probs=57.7
Q ss_pred CCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
.++-+|||..|++|.-+|..|+. | .+|+++|.++.+++..++|++.|++++.++...+|+...+-
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~ 175 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMY 175 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHH
Confidence 34568999999999999999975 2 38999999999999999999999999999999999987653
No 218
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=96.10 E-value=0.038 Score=54.37 Aligned_cols=64 Identities=14% Similarity=0.094 Sum_probs=55.2
Q ss_pred CeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC--C-CCcEEEEeccHHHHHHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK--V-DNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~--l-~~ri~~~~~Da~e~l~~l 160 (380)
++||-+|.|.|..+-.+++.. .+++.||++|..++++++=...-. . +.|++++.+|+.++++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~ 146 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC 146 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC
Confidence 599999999999999999987 499999999999999998764432 2 478999999999998654
No 219
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=96.10 E-value=0.023 Score=53.75 Aligned_cols=61 Identities=23% Similarity=0.191 Sum_probs=54.9
Q ss_pred CCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
+.+++|+|+|.|.-|+++|-. ..+|+-+|.+..=+..++.-....+++| ++++++.++++-
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~n-v~i~~~RaE~~~ 130 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLEN-VEIVHGRAEEFG 130 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCCC-eEEehhhHhhcc
Confidence 689999999999999998843 3479999999999999999999999998 999999998875
No 220
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.04 E-value=0.011 Score=57.61 Aligned_cols=53 Identities=28% Similarity=0.451 Sum_probs=43.7
Q ss_pred eEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 98 TICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
+|+|+|||.|.+++-+...|. .|+++|+++.+++..+.|.. + .++++|+.++.
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~-----~--~~~~~Di~~~~ 55 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFP-----N--KLIEGDITKID 55 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCC-----C--CCccCccccCc
Confidence 589999999999998888877 68999999999999998863 2 15677877654
No 221
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=95.95 E-value=0.016 Score=54.30 Aligned_cols=63 Identities=17% Similarity=0.244 Sum_probs=42.2
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHH-------cCCC-CcEEEEeccHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKV-------NKVD-NYVRAYNMDAR 154 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~l-------N~l~-~ri~~~~~Da~ 154 (380)
.+.++++.+|+|||+|-..+.+|.. ++ +++|||+.+...+.|+.+.+. .+.. ..+++.++|..
T Consensus 39 ~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~gdfl 111 (205)
T PF08123_consen 39 NLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIHGDFL 111 (205)
T ss_dssp T--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEECS-TT
T ss_pred CCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeeccCcc
Confidence 4678999999999999999987754 55 699999999999988875543 3332 35778888864
No 222
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=95.77 E-value=0.093 Score=53.45 Aligned_cols=70 Identities=19% Similarity=0.157 Sum_probs=57.1
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHH---cC--CC-CcEEEEeccHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKV---NK--VD-NYVRAYNMDAREFIRQL 160 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~l---N~--l~-~ri~~~~~Da~e~l~~l 160 (380)
..++.-+.||-+|.|-|.-.-.+.+.- .+|+-||++|.+++.+++|..+ |+ ++ .|+++++.|+..+++..
T Consensus 285 s~~~~a~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a 362 (508)
T COG4262 285 SSVRGARSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTA 362 (508)
T ss_pred ccccccceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhh
Confidence 344566899999999999998998875 3999999999999999977543 32 33 58999999999998654
No 223
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=95.69 E-value=0.015 Score=58.58 Aligned_cols=57 Identities=23% Similarity=0.265 Sum_probs=44.2
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
+.+|.++||+||+.|+|+-.++++|++|+|||..+-+ ..+.. ..+|+.+.+|...+.
T Consensus 209 ~~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~~---~~~V~h~~~d~fr~~ 265 (357)
T PRK11760 209 LAPGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLMD---TGQVEHLRADGFKFR 265 (357)
T ss_pred cCCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----HhhhC---CCCEEEEeccCcccC
Confidence 4689999999999999999999999999999966522 22211 235888888876653
No 224
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=95.59 E-value=0.015 Score=55.83 Aligned_cols=53 Identities=21% Similarity=0.170 Sum_probs=43.1
Q ss_pred HHHHHHHhccCCCC-eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527 84 HEHLRIISQFRPGE-TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 84 tE~~r~i~~i~~g~-~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N 136 (380)
++....+..+.++. .+||+|||+|.-++.+|..-.+|+|+|+|+.+++.|++-
T Consensus 21 tdw~~~ia~~~~~h~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~ 74 (261)
T KOG3010|consen 21 TDWFKKIASRTEGHRLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKH 74 (261)
T ss_pred HHHHHHHHhhCCCcceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcC
Confidence 44555556666665 899999999977888888778999999999999988864
No 225
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=0.02 Score=51.57 Aligned_cols=62 Identities=24% Similarity=0.280 Sum_probs=54.8
Q ss_pred CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+..+.+|+|+|-|-+.+.+++.|. ..+++|+||..+.+.+-.+-..++..+..|.+.|..++
T Consensus 72 ~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~ 134 (199)
T KOG4058|consen 72 PKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKV 134 (199)
T ss_pred CCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhc
Confidence 334799999999999999999985 89999999999999999999999988888888777654
No 226
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=95.42 E-value=0.027 Score=53.03 Aligned_cols=54 Identities=28% Similarity=0.252 Sum_probs=44.4
Q ss_pred cCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+....+|+|+|+|.|.+++.+++. +.+++..|+ |..++.+++ .+||+++.+|..
T Consensus 98 ~~~~~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f 153 (241)
T PF00891_consen 98 FSGFKTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFF 153 (241)
T ss_dssp TTTSSEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TT
T ss_pred ccCccEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHH
Confidence 456679999999999999999987 359999999 999998888 668999999987
No 227
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=95.23 E-value=0.083 Score=48.47 Aligned_cols=63 Identities=22% Similarity=0.226 Sum_probs=51.4
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQL 160 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l 160 (380)
....|.-||++|.|+|.|+-.+.++|. .++++|.|++.+..+.+-. .+ +.+++||+.+.=..+
T Consensus 45 ~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~-----p~-~~ii~gda~~l~~~l 110 (194)
T COG3963 45 DPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLY-----PG-VNIINGDAFDLRTTL 110 (194)
T ss_pred CcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhC-----CC-ccccccchhhHHHHH
Confidence 356688999999999999999999875 8999999999999876542 33 679999998764333
No 228
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=95.09 E-value=0.055 Score=54.36 Aligned_cols=60 Identities=18% Similarity=0.140 Sum_probs=42.0
Q ss_pred CCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHHHHHHHHHH---------cCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVHYLKINAKV---------NKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie~a~~Na~l---------N~l~~ri~~~~~Da~ 154 (380)
++.+|||||||-|+-..=....+ ..++|+|++..+++.|++-.+. .+..=...++.+|..
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f 131 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCF 131 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTC
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccc
Confidence 68899999999888666555544 4999999999999999998722 111113567888775
No 229
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=95.08 E-value=0.035 Score=50.02 Aligned_cols=47 Identities=32% Similarity=0.333 Sum_probs=36.9
Q ss_pred CCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
++.+|||+||+.|+|+-.++.++ .+|+|+|+.+. ..+.+ +..+++|.
T Consensus 23 ~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~-----------~~~~~-~~~i~~d~ 72 (181)
T PF01728_consen 23 KGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM-----------DPLQN-VSFIQGDI 72 (181)
T ss_dssp TTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST-----------GS-TT-EEBTTGGG
T ss_pred cccEEEEcCCcccceeeeeeecccccceEEEEecccc-----------ccccc-eeeeeccc
Confidence 34899999999999999999998 59999999987 22233 66667776
No 230
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=94.98 E-value=0.078 Score=52.86 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=55.9
Q ss_pred ChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 80 SRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 80 ~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
|-+..|.+..+. ..++.+++|.--|.|+-+..++.. .++|+|+|.+|+|++.+++++. ...+++.+++++-.++-
T Consensus 6 PVll~Evl~~L~-~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~--~~~~r~~~~~~~F~~l~ 82 (310)
T PF01795_consen 6 PVLLKEVLEALN-PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLK--KFDDRFIFIHGNFSNLD 82 (310)
T ss_dssp -TTHHHHHHHHT---TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTC--CCCTTEEEEES-GGGHH
T ss_pred cccHHHHHHhhC-cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHh--hccceEEEEeccHHHHH
Confidence 334445554443 567889999999999999999976 4699999999999999988765 33678999999877776
Q ss_pred HHHh
Q 046527 158 RQLM 161 (380)
Q Consensus 158 ~~l~ 161 (380)
..+.
T Consensus 83 ~~l~ 86 (310)
T PF01795_consen 83 EYLK 86 (310)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6554
No 231
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=94.67 E-value=0.1 Score=50.17 Aligned_cols=57 Identities=21% Similarity=0.265 Sum_probs=44.2
Q ss_pred eeecChHHHHHHHHHhc---cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHH
Q 046527 76 VYWNSRLEHEHLRIISQ---FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHY 132 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~---i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~ 132 (380)
-.|.+|-.......+.. ..+|.++||+|+-+|.|+-.+.++|+ .|+|+|..-.-+.|
T Consensus 57 ~~yVSRG~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~ 117 (245)
T COG1189 57 QPYVSRGGLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHW 117 (245)
T ss_pred cCccccHHHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCH
Confidence 34567755554444433 35799999999999999999999987 99999988766655
No 232
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=94.64 E-value=0.048 Score=54.39 Aligned_cols=57 Identities=32% Similarity=0.454 Sum_probs=47.2
Q ss_pred CeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
-+++|||||.|++.+-+...|. -+.++|++|.+++..+.|... -.++..|+.++..+
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~ 61 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGE 61 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChh
Confidence 4799999999999998888886 789999999999999988643 35677888776543
No 233
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=94.60 E-value=0.2 Score=49.69 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=54.3
Q ss_pred CCeEEEecCCcchhHHHHhhcC----CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKG----CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g----~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.-+|+|+.||.|-.-+-+.... ..|..+|.+|..++..++-++.+|+++.++|.++|+++.
T Consensus 136 pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~ 200 (311)
T PF12147_consen 136 PVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDR 200 (311)
T ss_pred ceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCH
Confidence 4589999999999988777652 389999999999999999999999999679999999875
No 234
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=94.53 E-value=0.081 Score=55.84 Aligned_cols=77 Identities=17% Similarity=0.266 Sum_probs=57.4
Q ss_pred eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcC------CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 046527 76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKG------CIVFANDLNPDSVHYLKINAKVNKVDNYVRAY 149 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g------~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~ 149 (380)
=|+.|+...+.+..+....+..+|+|..||+|.+-+.+++.- ...+|.|+++..+..++.|+-++++...+...
T Consensus 167 EfyTP~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~ 246 (489)
T COG0286 167 EFYTPREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIR 246 (489)
T ss_pred ccCChHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccc
Confidence 355677555554333334677899999999999988877542 46999999999999999999999987323444
Q ss_pred ecc
Q 046527 150 NMD 152 (380)
Q Consensus 150 ~~D 152 (380)
.+|
T Consensus 247 ~~d 249 (489)
T COG0286 247 HGD 249 (489)
T ss_pred ccc
Confidence 444
No 235
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.51 E-value=0.053 Score=53.84 Aligned_cols=52 Identities=27% Similarity=0.365 Sum_probs=42.7
Q ss_pred EEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 99 ICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 99 VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
|+|||||.|.+++-+-+.|. -|.++|+++.+++..+.|.. + .++.+|+.++-
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~-----~--~~~~~Di~~~~ 53 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFG-----N--KVPFGDITKIS 53 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCC-----C--CCCccChhhhh
Confidence 68999999999999988887 46789999999999998852 2 34668887764
No 236
>PRK10458 DNA cytosine methylase; Provisional
Probab=94.50 E-value=0.072 Score=55.95 Aligned_cols=58 Identities=28% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.-+++|+|||+|++++-+-..|. -|.++|+++.|.+.-+.|.. ...+ ..++++|+.++
T Consensus 88 ~~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~--~~p~-~~~~~~DI~~i 146 (467)
T PRK10458 88 AFRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWY--CDPA-THRFNEDIRDI 146 (467)
T ss_pred CceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcC--CCCc-cceeccChhhC
Confidence 34899999999999998887776 68999999999998888742 1111 34566777665
No 237
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=94.32 E-value=0.11 Score=50.29 Aligned_cols=57 Identities=23% Similarity=0.404 Sum_probs=43.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEE
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNKVDNYVR 147 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~ 147 (380)
..+....+|+|++||.-|++++..... ..++|+|++..+++.+..-+...++..++.
T Consensus 101 ~~~~~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~~~~~~~ 159 (251)
T PF07091_consen 101 GRIPPPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLGVPHDAR 159 (251)
T ss_dssp CCS---SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT-CEEEE
T ss_pred hcCCCCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhCCCccee
Confidence 334557899999999999999888664 599999999999999999988888765443
No 238
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=94.30 E-value=0.064 Score=51.43 Aligned_cols=68 Identities=28% Similarity=0.375 Sum_probs=47.4
Q ss_pred hccCCCC--eEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH---cC-C----CCcEEEEeccHHHHHH
Q 046527 91 SQFRPGE--TICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV---NK-V----DNYVRAYNMDAREFIR 158 (380)
Q Consensus 91 ~~i~~g~--~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l---N~-l----~~ri~~~~~Da~e~l~ 158 (380)
..+++|. +|||.-+|-|.=++.+|..|++|+++|.||-....++.-++. .. + ..+++++++|..+++.
T Consensus 69 ~Glk~~~~~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~ 146 (234)
T PF04445_consen 69 VGLKPGMRPSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLR 146 (234)
T ss_dssp TT-BTTB---EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCC
T ss_pred hCCCCCCCCEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHh
Confidence 4456654 999999999999999998899999999999988877754432 21 1 1479999999999987
No 239
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=94.16 E-value=0.03 Score=56.40 Aligned_cols=41 Identities=29% Similarity=0.609 Sum_probs=38.9
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVH 131 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie 131 (380)
+.+++|+.|+|.|.|+|.|-+++|..|+.|+|-|++-..+.
T Consensus 204 Amv~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vr 244 (421)
T KOG2671|consen 204 AMVKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVR 244 (421)
T ss_pred hccCCCCEEecCccccCceeeehhhhcceeeccccchheee
Confidence 56889999999999999999999999999999999998887
No 240
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=94.15 E-value=0.062 Score=50.87 Aligned_cols=65 Identities=23% Similarity=0.260 Sum_probs=51.9
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-C---CEEEEEeCCHHHHHHHHHHHHHcC--------CC-CcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-G---CIVFANDLNPDSVHYLKINAKVNK--------VD-NYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g---~~V~avDlnp~Aie~a~~Na~lN~--------l~-~ri~~~~~Da~e~ 156 (380)
.+.+|...||+|+|+|.++..++.. | ..++|||.-|+.++++++|+...- ++ .++.++.+|.+..
T Consensus 79 ~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGDgr~g 156 (237)
T KOG1661|consen 79 HLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGDGRKG 156 (237)
T ss_pred hhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCCcccc
Confidence 4789999999999999999988854 3 355999999999999999987542 21 3467778887654
No 241
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=93.93 E-value=0.4 Score=48.06 Aligned_cols=74 Identities=9% Similarity=0.014 Sum_probs=55.6
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhh------cCCEEEEEeCCHHHHHHHHHHHHHcCCCC-cEEEEeccHHHHHHHH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQ------KGCIVFANDLNPDSVHYLKINAKVNKVDN-YVRAYNMDAREFIRQL 160 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~------~g~~V~avDlnp~Aie~a~~Na~lN~l~~-ri~~~~~Da~e~l~~l 160 (380)
.++..+.++..++|+|||.|.=+-.+.. +...-+++|+|.++++.+..++..-.+.. .+..+++|..+.+..+
T Consensus 69 ~Ia~~i~~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~v~~l~gdy~~~l~~l 148 (319)
T TIGR03439 69 DIAASIPSGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVRCAGLLGTYDDGLAWL 148 (319)
T ss_pred HHHHhcCCCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeEEEEEEecHHHHHhhc
Confidence 4456778888999999999986444332 23478999999999999999998444443 3455899998887665
Q ss_pred h
Q 046527 161 M 161 (380)
Q Consensus 161 ~ 161 (380)
.
T Consensus 149 ~ 149 (319)
T TIGR03439 149 K 149 (319)
T ss_pred c
Confidence 4
No 242
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=93.86 E-value=0.068 Score=50.50 Aligned_cols=41 Identities=34% Similarity=0.500 Sum_probs=31.5
Q ss_pred CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
+..+++|+|||+|..++.+...+.+|+.+|+++..+...+.
T Consensus 20 ~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 20 KHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred CCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 57899999999999999887778899999999998887663
No 243
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=93.75 E-value=0.091 Score=54.20 Aligned_cols=66 Identities=36% Similarity=0.401 Sum_probs=56.9
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc--C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK--G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
...++|++|||+||--|.=+.++|.. + ..|+|+|.|..-++.+..|+...|+.+ ..+.+.|.++|-
T Consensus 237 L~Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~n-tiv~n~D~~ef~ 305 (460)
T KOG1122|consen 237 LDPQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVTN-TIVSNYDGREFP 305 (460)
T ss_pred cCCCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCCc-eEEEccCccccc
Confidence 45689999999999999988877754 2 389999999999999999999999998 567889998663
No 244
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=93.61 E-value=0.059 Score=51.92 Aligned_cols=54 Identities=24% Similarity=0.410 Sum_probs=43.4
Q ss_pred eEEEecCCcchhHHHHhhcCC----EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 98 TICDMFAGIGPFAIPAAQKGC----IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~~g~----~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
++|++|||+|....++.+-.. .|+|.|-+|.|++..+.|...+- .++.....|.
T Consensus 74 ~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai~~vk~~~~~~e--~~~~afv~Dl 131 (264)
T KOG2361|consen 74 TILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAIELVKKSSGYDE--SRVEAFVWDL 131 (264)
T ss_pred hheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHHHHHHhccccch--hhhcccceec
Confidence 799999999999999997633 89999999999999999986654 3344444443
No 245
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=93.40 E-value=0.12 Score=48.95 Aligned_cols=58 Identities=16% Similarity=-0.008 Sum_probs=47.0
Q ss_pred eEEEecCCcchhHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEE-EEeccHHHH
Q 046527 98 TICDMFAGIGPFAIPAA-QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVR-AYNMDAREF 156 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA-~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~-~~~~Da~e~ 156 (380)
.||++|||+|+-=-..- +.+++|+++|.|+.+-+.|.+.++.++-.. ++ ++.+|++..
T Consensus 79 ~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~k~~~-~~~fvva~ge~l 138 (252)
T KOG4300|consen 79 DVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEKKPLQ-VERFVVADGENL 138 (252)
T ss_pred ceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhccCcc-eEEEEeechhcC
Confidence 47999999998544333 457899999999999999999999996655 55 888887654
No 246
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=92.92 E-value=0.22 Score=47.89 Aligned_cols=49 Identities=27% Similarity=0.352 Sum_probs=44.1
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN 140 (380)
.-.+|++|||.|+|+|..++.+.+.|...+++|++++-++.+.+-+...
T Consensus 219 ~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 219 YSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred cCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 4568999999999999999999999999999999999999998877644
No 247
>COG1743 Adenine-specific DNA methylase containing a Zn-ribbon [DNA replication, recombination, and repair]
Probab=91.56 E-value=0.12 Score=56.72 Aligned_cols=67 Identities=25% Similarity=0.226 Sum_probs=51.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
.....+..++|.|+|-|.+.+.+++.|+.|+++|+||-++-.++..+..-+--. ....-|+..+...
T Consensus 86 ~~~~~~~~~lDPfAG~GSIPlEAlRLG~~v~AvelnPvAylfLKavlEyPkkfg--~~liedv~~~~~w 152 (875)
T COG1743 86 ETPFEGPKLLDPFAGGGSIPLEALRLGLEVVAVELNPVAYLFLKAVLEYPKKFG--PELIEDVERWGAW 152 (875)
T ss_pred cCcccCCcccccccCCCccchHHHhcCceeEEEecccHHHHHHHHHHhcchhhh--HHHHHHHHHHHHH
Confidence 445567799999999999999999999999999999999999999876532111 1233466666544
No 248
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=91.36 E-value=0.36 Score=41.71 Aligned_cols=52 Identities=29% Similarity=0.232 Sum_probs=34.4
Q ss_pred EecCCcc--hhHHHHh--hc--CCEEEEEeCCHHHHHHHHHH--HHHcCCCCcEEEEecc
Q 046527 101 DMFAGIG--PFAIPAA--QK--GCIVFANDLNPDSVHYLKIN--AKVNKVDNYVRAYNMD 152 (380)
Q Consensus 101 DlfcGvG--~fsl~aA--~~--g~~V~avDlnp~Aie~a~~N--a~lN~l~~ri~~~~~D 152 (380)
|+||+.| ...+..+ .. +.+|+++|.+|..++.++.| +.+|...+.++++...
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~~~~~l~~~~~~~~~~~~~ 60 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRNLNLALNDKDGEVEFHPYA 60 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH--HHHTTTSTTGGEEEE-
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHHHHHHhcCCCceEEEEEee
Confidence 8999999 5555443 22 45999999999999999999 8888665446665543
No 249
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=91.01 E-value=0.23 Score=40.56 Aligned_cols=61 Identities=15% Similarity=0.065 Sum_probs=23.2
Q ss_pred EEecCCcchhHHHHhhc---C--CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 100 CDMFAGIGPFAIPAAQK---G--CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 100 LDlfcGvG~fsl~aA~~---g--~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
|++|++.|..++.+++. . .+++++|..+. .+..+++++..++.++++++++|..+++..+.
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~ 66 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLP 66 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHH
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcC
Confidence 57888888888877653 2 27999999997 44555555556777789999999999988775
No 250
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=90.85 E-value=0.28 Score=49.29 Aligned_cols=64 Identities=14% Similarity=0.052 Sum_probs=50.3
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcC-CCC----cEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNK-VDN----YVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~-l~~----ri~~~~~Da~e~ 156 (380)
.++++.++|||||-|+=.+-.-+.|. ..+|+|+..-+++.|++-.+... ... .+.++.+|....
T Consensus 115 ~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc~~~ 184 (389)
T KOG1975|consen 115 TKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADCFKE 184 (389)
T ss_pred hccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEeccchh
Confidence 36789999999999999888777765 89999999999999998665321 111 368999997543
No 251
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=90.83 E-value=0.85 Score=44.51 Aligned_cols=41 Identities=22% Similarity=0.157 Sum_probs=36.3
Q ss_pred CCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
...++||+|||-|..+..++....+|++-|.|+.+...+++
T Consensus 94 ~~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~ 134 (265)
T PF05219_consen 94 KDKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSK 134 (265)
T ss_pred cCCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHh
Confidence 45689999999999999999988899999999999776554
No 252
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=90.75 E-value=1.4 Score=42.13 Aligned_cols=61 Identities=23% Similarity=0.241 Sum_probs=46.3
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+++|.+||-||+.+|+..-+++-.. ..|+|||.+|.+.+.+-.=++.- .+|-.+.+||+.
T Consensus 70 ~ik~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~ 133 (229)
T PF01269_consen 70 PIKPGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARH 133 (229)
T ss_dssp S--TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTS
T ss_pred CCCCCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCC
Confidence 46789999999999999999998752 39999999999988887555432 248889899873
No 253
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=90.68 E-value=0.82 Score=35.95 Aligned_cols=55 Identities=25% Similarity=0.280 Sum_probs=36.7
Q ss_pred EEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 99 ICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 99 VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++|++||+|... .++.. +..++++|.++.++..++......+... +.+..+|...
T Consensus 52 ~ld~~~g~g~~~-~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 109 (257)
T COG0500 52 VLDIGCGTGRLA-LLARLGGRGAYVVGVDLSPEMLALARARAEGAGLGL-VDFVVADALG 109 (257)
T ss_pred eEEecCCcCHHH-HHHHhCCCCceEEEEeCCHHHHHHHHhhhhhcCCCc-eEEEEecccc
Confidence 999999999966 33332 2489999999999998555443221111 4666666554
No 254
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=89.88 E-value=0.43 Score=45.21 Aligned_cols=65 Identities=15% Similarity=0.276 Sum_probs=54.8
Q ss_pred CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcC-------CCCcEEEEeccHHHHHHHHh
Q 046527 96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNK-------VDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~-------l~~ri~~~~~Da~e~l~~l~ 161 (380)
.-.+.|+|||-|.+.+.++-..- -++|.|+.-...++.++-+.... +.| +.+.+..+..++.++-
T Consensus 61 kvefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~n-i~vlr~namk~lpn~f 134 (249)
T KOG3115|consen 61 KVEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPN-ISVLRTNAMKFLPNFF 134 (249)
T ss_pred cceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhcccccccccc-ceeeeccchhhccchh
Confidence 34689999999999999998764 79999999999999998887654 444 8899999999988764
No 255
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=88.64 E-value=0.4 Score=50.90 Aligned_cols=60 Identities=23% Similarity=0.299 Sum_probs=49.0
Q ss_pred CeEEEecCCcchhHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQK------GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~------g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l 157 (380)
.+|+-+|+|-|+++-...+. ..++++||.||.|+-.++. .+.-.++++|+++..|++++-
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ 434 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWN 434 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccC
Confidence 36789999999997655443 2389999999999998765 666678899999999998875
No 256
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=88.38 E-value=1.3 Score=43.60 Aligned_cols=61 Identities=13% Similarity=0.140 Sum_probs=39.5
Q ss_pred CeEEEecCCcchhHH-HHhhc---CCEEEEEeCCHHHHHHHHHHHH-HcCCCCcEEEEeccHHHHH
Q 046527 97 ETICDMFAGIGPFAI-PAAQK---GCIVFANDLNPDSVHYLKINAK-VNKVDNYVRAYNMDAREFI 157 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl-~aA~~---g~~V~avDlnp~Aie~a~~Na~-lN~l~~ri~~~~~Da~e~l 157 (380)
.+|+=+|||-=|++. .+++. +..|+++|++|+|++.+++=++ ..+++.+++++.+|+.+.-
T Consensus 122 ~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~ 187 (276)
T PF03059_consen 122 SRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVT 187 (276)
T ss_dssp -EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-
T ss_pred ceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccc
Confidence 489988887666654 44433 4589999999999999998776 6688888999999987654
No 257
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=87.86 E-value=4 Score=39.50 Aligned_cols=61 Identities=13% Similarity=0.136 Sum_probs=38.5
Q ss_pred CCCeEEEecCCcchhHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
.|+.||-+|=+ =..|+++|.. ..+|+.+|+++..+++.++.++..|+. |+.+..|.++-++
T Consensus 44 ~gk~il~lGDD-DLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP 106 (243)
T PF01861_consen 44 EGKRILFLGDD-DLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLP 106 (243)
T ss_dssp TT-EEEEES-T-T-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---
T ss_pred cCCEEEEEcCC-cHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCC
Confidence 57889888633 3455655543 459999999999999999999999996 8999888876553
No 258
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=87.35 E-value=3.4 Score=41.29 Aligned_cols=68 Identities=16% Similarity=0.099 Sum_probs=57.5
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
.+.++...+|.--|.|+-+-.+.... ++++|+|.+|.|++.|++-...++ +++.++++.-.++...+.
T Consensus 20 ~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l~ 90 (314)
T COG0275 20 APKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEALK 90 (314)
T ss_pred ccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHHH
Confidence 35677899999999999999988774 489999999999999999887655 679999998777766554
No 259
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=87.34 E-value=0.92 Score=44.23 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=34.0
Q ss_pred CCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na 137 (380)
...+|||+|||.|+....+... -.+++++|.|+.+++.++.=+
T Consensus 33 ~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~ 78 (274)
T PF09243_consen 33 RPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLL 78 (274)
T ss_pred CCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHH
Confidence 3468999999999877665542 238999999999999888744
No 260
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=87.14 E-value=1.1 Score=45.23 Aligned_cols=46 Identities=24% Similarity=0.271 Sum_probs=40.1
Q ss_pred HhccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 90 ISQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 90 i~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
...++.|.+||-+||| +|..++..|+. |+ +|+.+|+++.-++.|++
T Consensus 164 ~~~vk~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~ 212 (354)
T KOG0024|consen 164 RAGVKKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK 212 (354)
T ss_pred hcCcccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH
Confidence 4678999999999998 78888888875 55 99999999999999987
No 261
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=86.59 E-value=0.047 Score=56.33 Aligned_cols=136 Identities=25% Similarity=0.230 Sum_probs=89.8
Q ss_pred CEEEEEcCCCCcccHHHHHHHHHhccCCCeeEEEEecCCccccccccceEEEecCCccEEEEEeCCeEEEEccCc-eeec
Q 046527 1 HIAHLNIHDELLPFKDVIAKVIYDKNYPRIKTVVNKVGTIANEFRVPEFEILAGEDNMVTEVKQYGATFKLDYSL-VYWN 79 (380)
Q Consensus 1 hIahinl~~~~lp~k~~I~~aLldk~~p~iktVv~k~~~i~~~~r~~~~elLaG~~~~~~~v~E~G~~F~id~~~-ff~n 79 (380)
|+|+..|+.+.+||++.|++..++|+.+.+.++.++++.+...+++...+++++-..+.+..-|.+..|+.+... -+++
T Consensus 306 mda~~Flr~e~~~~~~~I~~~v~~kl~k~~~t~~~~~d~~p~~~~~~~~~i~hvvmnLPa~avefL~~F~~~la~k~~~d 385 (495)
T KOG2078|consen 306 MDAKDFLRQEPLPYKRLIADEVLDKLMKKIGTVVNKIDRIPQPFRTMQLHIVHVVMNLPASAVEFLLRFSGDLARKGPID 385 (495)
T ss_pred ccHHHHhhcCCchhhhHHHHHHhhhhhhhhcccccccccCCCcccccchhhhhhhccChHHHHHHHHHhHHHHhccCccc
Confidence 678899999999999999999999877889999999988888888777777777554444333444455544443 1111
Q ss_pred ChH-----------------HHHHHHHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527 80 SRL-----------------EHEHLRIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV 142 (380)
Q Consensus 80 ~rl-----------------~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l 142 (380)
++. .+|-+ +.+. -...++++++.| ++..+....+|...+...-+...+-.|.-.|++
T Consensus 386 ~~~lplvhcy~F~k~~~~~~s~e~~-V~ar---~~~~~kv~~e~~--~~~~~h~VR~VapnK~M~ca~~~lp~~~l~~~~ 459 (495)
T KOG2078|consen 386 KTPLPLVHCYCFSKLFCDVSSTEDL-VTAR---IVAALKVFAEDG--ALVSLHLVRKVAPNKEMYCASFQLPANVLVNEL 459 (495)
T ss_pred cccceeEEEEEEeecccCCCchHHH-HHHH---HHhhcceeeccc--cceeeeeeeccCCCcccchhhhhcHHHHhhhhh
Confidence 110 11111 1100 013456677777 333333445888889888888888888877765
No 262
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=85.36 E-value=2.9 Score=44.17 Aligned_cols=71 Identities=15% Similarity=0.263 Sum_probs=51.6
Q ss_pred cCceeecChHHHHHH-HHHhc-cCCCCeEEEecCCcchhHHHHhhc---C---CEEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527 73 YSLVYWNSRLEHEHL-RIISQ-FRPGETICDMFAGIGPFAIPAAQK---G---CIVFANDLNPDSVHYLKINAKVNKVD 143 (380)
Q Consensus 73 ~~~ff~n~rl~tE~~-r~i~~-i~~g~~VLDlfcGvG~fsl~aA~~---g---~~V~avDlnp~Aie~a~~Na~lN~l~ 143 (380)
+...|+.++...+.+ +++.. ..++..|.|++||+|.|-+...+. + ..+++.|.++.++..++.|+.++++.
T Consensus 193 ~~g~~~Tp~~Iv~l~~~~~~~~~dp~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~ 271 (501)
T TIGR00497 193 SGGEFFTPQDISELLARIAIGKKDTVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNID 271 (501)
T ss_pred cCceeeCcHHHHHHHHHHhccCCCCCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCC
Confidence 344666666444443 32322 336689999999999998865532 2 26999999999999999999988764
No 263
>PTZ00357 methyltransferase; Provisional
Probab=84.95 E-value=1.2 Score=48.88 Aligned_cols=59 Identities=15% Similarity=0.209 Sum_probs=43.2
Q ss_pred eEEEecCCcchhHHHHhh---c-CC--EEEEEeCCHHHHHHHHHHHH-HcCC-------CCcEEEEeccHHHH
Q 046527 98 TICDMFAGIGPFAIPAAQ---K-GC--IVFANDLNPDSVHYLKINAK-VNKV-------DNYVRAYNMDAREF 156 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~---~-g~--~V~avDlnp~Aie~a~~Na~-lN~l-------~~ri~~~~~Da~e~ 156 (380)
+|+-+|||-|++.-.+.+ . +. +|+|||.||.++.....+.. ...+ .++|+++..|++++
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W 775 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTI 775 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCccccc
Confidence 589999999999654433 2 32 89999999887656555532 2244 45799999999988
No 264
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=84.87 E-value=0.99 Score=42.54 Aligned_cols=52 Identities=27% Similarity=0.298 Sum_probs=41.7
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCC---EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGC---IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~---~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.-+.+|.+|+||||--|.++-.+++... .|+|+|+.|-.. +.+ |.++++|++
T Consensus 41 ~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~~~-----------~~~-V~~iq~d~~ 95 (205)
T COG0293 41 KLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPMKP-----------IPG-VIFLQGDIT 95 (205)
T ss_pred CeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccccc-----------CCC-ceEEeeecc
Confidence 3467899999999999999999998743 599999998432 234 888999874
No 265
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=84.42 E-value=2.1 Score=43.73 Aligned_cols=66 Identities=27% Similarity=0.302 Sum_probs=50.4
Q ss_pred HhccCCCCeEEEecCCcchhHHHHhhcCC------EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 90 ISQFRPGETICDMFAGIGPFAIPAAQKGC------IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 90 i~~i~~g~~VLDlfcGvG~fsl~aA~~g~------~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+..+++|++||||||--|.=++.+....+ .|+|+|.++.=+.+++.-+..-.-.+ +.+.+.|+..+
T Consensus 150 ~L~v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~~~~-~~v~~~~~~~~ 221 (375)
T KOG2198|consen 150 ALGVKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLPSPN-LLVTNHDASLF 221 (375)
T ss_pred hcccCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccCCcc-eeeecccceec
Confidence 35678999999999999999987776543 89999999999999998875544333 55566655433
No 266
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=84.28 E-value=2.4 Score=43.61 Aligned_cols=45 Identities=22% Similarity=0.127 Sum_probs=35.9
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+-+.|+|+|+|.|.++-.++-. |-.|+|||.|..+.+.|++
T Consensus 149 ~~f~gi~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 149 SDFTGIDQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred HhhcCCCeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 33445579999999999999988854 6699999999777766553
No 267
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=82.74 E-value=2.4 Score=42.97 Aligned_cols=64 Identities=30% Similarity=0.412 Sum_probs=45.7
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEec----cHHHHHHHHh
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNM----DAREFIRQLM 161 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~----Da~e~l~~l~ 161 (380)
..+.+|+.|.-.||| +|.-++.-|+. |+ +|+|+|+|++-+++|++ .|.. .+++. |+.+.+.++.
T Consensus 181 a~v~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~----fGAT---~~vn~~~~~~vv~~i~~~T 251 (366)
T COG1062 181 AKVEPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKK----FGAT---HFVNPKEVDDVVEAIVELT 251 (366)
T ss_pred ccCCCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHh----cCCc---eeecchhhhhHHHHHHHhc
Confidence 467889988888776 77777777764 55 99999999999999874 3433 23433 5666666554
No 268
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=82.63 E-value=2.6 Score=42.69 Aligned_cols=46 Identities=24% Similarity=0.339 Sum_probs=38.2
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~N 136 (380)
..+++|++|+-.|+| .|..++.+|+ .|++|+++|.+++-.+.|++=
T Consensus 162 ~~~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~l 209 (339)
T COG1064 162 ANVKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKL 209 (339)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHh
Confidence 457889999888776 6777888887 589999999999999988753
No 269
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=82.28 E-value=3 Score=44.25 Aligned_cols=71 Identities=15% Similarity=0.266 Sum_probs=41.8
Q ss_pred CCeEEEEccCceeecChHHH--HHH-HHHhcc-CCC--CeEEEecCCcchhHHHHhhcCCEEEEE---eCCHHHHHHHHH
Q 046527 65 YGATFKLDYSLVYWNSRLEH--EHL-RIISQF-RPG--ETICDMFAGIGPFAIPAAQKGCIVFAN---DLNPDSVHYLKI 135 (380)
Q Consensus 65 ~G~~F~id~~~ff~n~rl~t--E~~-r~i~~i-~~g--~~VLDlfcGvG~fsl~aA~~g~~V~av---Dlnp~Aie~a~~ 135 (380)
.|=.|.|.-+.-.|.+.... +.+ ..+..+ ..| .++||+|||+|.|+..+..++..+.++ |..+..++.|.+
T Consensus 81 ~gd~~~FPgggt~F~~Ga~~Yid~i~~~~~~~~~~g~iR~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfale 160 (506)
T PF03141_consen 81 EGDKFRFPGGGTMFPHGADHYIDQIAEMIPLIKWGGGIRTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALE 160 (506)
T ss_pred cCCEEEeCCCCccccCCHHHHHHHHHHHhhccccCCceEEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhh
Confidence 55567776665433332211 122 222221 223 478999999999999999998755443 555555665543
No 270
>COG3392 Adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=81.48 E-value=1.1 Score=43.87 Aligned_cols=40 Identities=33% Similarity=0.444 Sum_probs=34.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSV 130 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Ai 130 (380)
.....|..++|+|+|+|..+-.+-+.|..|+++|+--.+.
T Consensus 23 k~~~s~k~f~DiFaGtGVV~~~fkk~~n~iiaNDle~ysy 62 (330)
T COG3392 23 KEDLSGKIFCDIFAGTGVVGRFFKKAGNKIIANDLEYYSY 62 (330)
T ss_pred hcccCCCeeeeeccCccHHHHHHHHhcchhhhchHHHHHH
Confidence 3466788999999999999999999999999999866554
No 271
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=81.18 E-value=1.2 Score=43.95 Aligned_cols=40 Identities=23% Similarity=0.231 Sum_probs=35.8
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC-CEEEEEeCCHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG-CIVFANDLNPDSVH 131 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g-~~V~avDlnp~Aie 131 (380)
....|++|||+|||.|.-++.+..+| ..|...|.|.+.++
T Consensus 113 ~~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~ 153 (282)
T KOG2920|consen 113 MSFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLR 153 (282)
T ss_pred eEecCceeEecCCcccccchhhhhhccceeeeEecchhhee
Confidence 34678999999999999999999998 59999999998885
No 272
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=81.06 E-value=6.4 Score=39.13 Aligned_cols=62 Identities=18% Similarity=0.220 Sum_probs=49.3
Q ss_pred CCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
|+.|+-+| ---.+|+++|-.+. +|..+|+++..+....+-++.-|+.| ++.+.-|.+.-+.+
T Consensus 153 gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~~-ie~~~~Dlr~plpe 216 (354)
T COG1568 153 GKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYNN-IEAFVFDLRNPLPE 216 (354)
T ss_pred CCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCccc-hhheeehhcccChH
Confidence 55677777 56677887776654 99999999999999999999999886 88887777765543
No 273
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.00 E-value=3.2 Score=41.80 Aligned_cols=46 Identities=26% Similarity=0.410 Sum_probs=34.1
Q ss_pred HhccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 90 ISQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 90 i~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
.+.+.+|++|.-.|.| +|...+.-|+. |+ +++|||+|++=++.|++
T Consensus 187 ~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~ 235 (375)
T KOG0022|consen 187 TAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKE 235 (375)
T ss_pred hcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHh
Confidence 3567889988888766 45554554443 55 99999999999999874
No 274
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=79.84 E-value=6.4 Score=37.40 Aligned_cols=62 Identities=18% Similarity=0.175 Sum_probs=49.9
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+.+|+.||=||+-+|+-.-+.+.- + ..|+|||.+|.....+..-++. .+++-.+.+||+.-
T Consensus 73 pi~~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~---R~Ni~PIL~DA~~P 136 (231)
T COG1889 73 PIKEGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEK---RPNIIPILEDARKP 136 (231)
T ss_pred CcCCCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHh---CCCceeeecccCCc
Confidence 3578999999999999999998875 3 4899999999998887766654 23477888998643
No 275
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=79.41 E-value=5.8 Score=39.22 Aligned_cols=41 Identities=20% Similarity=0.237 Sum_probs=30.7
Q ss_pred CeEEEecCCcchh--HH--HHhhc------CCEEEEEeCCHHHHHHHHHHH
Q 046527 97 ETICDMFAGIGPF--AI--PAAQK------GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 97 ~~VLDlfcGvG~f--sl--~aA~~------g~~V~avDlnp~Aie~a~~Na 137 (380)
-+||..||.+|-= ++ .+... ..+|+|.|+|+.+++.|++.+
T Consensus 117 irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~ 167 (287)
T PRK10611 117 YRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGI 167 (287)
T ss_pred EEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCC
Confidence 5999999999943 33 23221 138999999999999998753
No 276
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=78.37 E-value=3.1 Score=39.59 Aligned_cols=63 Identities=14% Similarity=-0.043 Sum_probs=42.4
Q ss_pred CCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQ 159 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~ 159 (380)
-.+.||.|||+|-.+-.+... ..+|-.||.++..++.|++.+...+ .....+++.-..+|.+.
T Consensus 56 ~~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~ 119 (218)
T PF05891_consen 56 FNRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPE 119 (218)
T ss_dssp -SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----
T ss_pred cceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCC
Confidence 468999999999999876544 5599999999999999997654311 22356888887777543
No 277
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=78.03 E-value=3.9 Score=43.61 Aligned_cols=42 Identities=33% Similarity=0.339 Sum_probs=35.5
Q ss_pred CCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 94 RPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 94 ~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
.++++|+-+||| +|..++.+|+. |+.|+++|.+++..+.++.
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aes 206 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVES 206 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 468899999999 67777777765 7899999999999998875
No 278
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=77.83 E-value=5.8 Score=38.86 Aligned_cols=68 Identities=7% Similarity=0.132 Sum_probs=44.4
Q ss_pred EEEccCceeecChHHHHHHHHH-----hccC-CCCeEEEecCCcch--hHH--HHhhc-------CCEEEEEeCCHHHHH
Q 046527 69 FKLDYSLVYWNSRLEHEHLRII-----SQFR-PGETICDMFAGIGP--FAI--PAAQK-------GCIVFANDLNPDSVH 131 (380)
Q Consensus 69 F~id~~~ff~n~rl~tE~~r~i-----~~i~-~g~~VLDlfcGvG~--fsl--~aA~~-------g~~V~avDlnp~Aie 131 (380)
+.+..+.||+++..-......+ ..-. ..-+||-++|++|- .|+ .+... ..+|+|.|+|..+++
T Consensus 64 ltin~T~FFR~~~~f~~l~~~v~p~l~~~~~~~~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~ 143 (268)
T COG1352 64 LTINVTEFFRDPEHFEELRDEVLPELVKRKKGRPIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLE 143 (268)
T ss_pred hhhccchhccCcHHHHHHHHHHHHHHHhhccCCceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHH
Confidence 4556677888877555443222 1112 24589999999993 333 33322 238999999999999
Q ss_pred HHHHH
Q 046527 132 YLKIN 136 (380)
Q Consensus 132 ~a~~N 136 (380)
.|+.-
T Consensus 144 ~A~~G 148 (268)
T COG1352 144 KARAG 148 (268)
T ss_pred HHhcC
Confidence 98853
No 279
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=77.74 E-value=4.9 Score=35.71 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=29.7
Q ss_pred EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 119 IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 119 ~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+|+|.|+.++|++..++.++.+++.+++++++.+=.
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe 36 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHE 36 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GG
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHH
Confidence 699999999999999999999999988998875433
No 280
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=77.61 E-value=6.2 Score=39.27 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=48.4
Q ss_pred CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
.|++||=-|+|.|. +++.+|++|+++...|+|++..+...+.++.+| ++..+..|+
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdi 95 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDI 95 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecC
Confidence 58899999999884 678889999999999999999999999988775 577777776
No 281
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=77.28 E-value=4.7 Score=37.53 Aligned_cols=41 Identities=15% Similarity=0.166 Sum_probs=27.8
Q ss_pred CCeEEEecCCcchhHH----HHhh-----cC--CEEEEEeCCHHHHHHHHHH
Q 046527 96 GETICDMFAGIGPFAI----PAAQ-----KG--CIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl----~aA~-----~g--~~V~avDlnp~Aie~a~~N 136 (380)
.-+||.+||++|-=+. .+.. .+ .+|+|.|+|+.+++.|++-
T Consensus 32 ~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G 83 (196)
T PF01739_consen 32 PLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAG 83 (196)
T ss_dssp -EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHT
T ss_pred CeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhC
Confidence 3489999999994333 2333 12 2899999999999998753
No 282
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=75.49 E-value=5.2 Score=36.73 Aligned_cols=45 Identities=24% Similarity=0.341 Sum_probs=25.6
Q ss_pred hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 109 FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 109 fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
.++.+|..|.+|+++|+|++-++.+. +|... +..-...+.+.+..
T Consensus 15 ~A~~lA~~G~~V~g~D~~~~~v~~l~-----~g~~p---~~E~~l~~ll~~~~ 59 (185)
T PF03721_consen 15 LAAALAEKGHQVIGVDIDEEKVEALN-----NGELP---IYEPGLDELLKENV 59 (185)
T ss_dssp HHHHHHHTTSEEEEE-S-HHHHHHHH-----TTSSS---S-CTTHHHHHHHHH
T ss_pred HHHHHHhCCCEEEEEeCChHHHHHHh-----hcccc---ccccchhhhhcccc
Confidence 34455567889999999999777644 23222 33344555655443
No 283
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=75.01 E-value=9.2 Score=33.90 Aligned_cols=35 Identities=9% Similarity=0.113 Sum_probs=26.8
Q ss_pred EEEeCCHHHHHHHHHHHHHcC--CCCcEEEEeccHHH
Q 046527 121 FANDLNPDSVHYLKINAKVNK--VDNYVRAYNMDARE 155 (380)
Q Consensus 121 ~avDlnp~Aie~a~~Na~lN~--l~~ri~~~~~Da~e 155 (380)
.|+|+|+++++.|++.....+ ..++++++++|+.+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~ 37 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAID 37 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhh
Confidence 489999999999987765332 23358999999875
No 284
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=74.67 E-value=8.2 Score=38.76 Aligned_cols=43 Identities=37% Similarity=0.554 Sum_probs=35.0
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..++.+|+-+||| +|.+++.+++. |+ +|+++|.+++-++.|++
T Consensus 166 ~~~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~ 211 (350)
T COG1063 166 VRPGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKE 211 (350)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 3445599999888 78887777765 44 99999999999999986
No 285
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=73.95 E-value=4.8 Score=39.48 Aligned_cols=45 Identities=22% Similarity=0.169 Sum_probs=38.1
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCC
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKV 142 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l 142 (380)
..+||-.|||.|-++..+|.+|..|.|+|.|--|+ +--|.-+|+.
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Ml--l~s~fiLn~~ 101 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFML--LASNFILNHC 101 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHH--HHHHHHHccc
Confidence 46899999999999999999999999999999884 4455666653
No 286
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=73.77 E-value=28 Score=33.16 Aligned_cols=65 Identities=17% Similarity=0.142 Sum_probs=48.7
Q ss_pred CeEEEecCCcch----hHHHHhhc--CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEecc-HHHHHHHHh
Q 046527 97 ETICDMFAGIGP----FAIPAAQK--GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMD-AREFIRQLM 161 (380)
Q Consensus 97 ~~VLDlfcGvG~----fsl~aA~~--g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~D-a~e~l~~l~ 161 (380)
+.+++..|+.|+ +++.+|.+ |.++++|-.+++.....++.+...++.+.++|+.+| ..+.+..+.
T Consensus 43 kliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~ 114 (218)
T PF07279_consen 43 KLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLK 114 (218)
T ss_pred eEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhcc
Confidence 578888766543 33443333 679999999999988888888878888878999998 566777765
No 287
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=72.64 E-value=4.7 Score=37.94 Aligned_cols=36 Identities=31% Similarity=0.353 Sum_probs=30.7
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcC---CEEEEEeCCH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKG---CIVFANDLNP 127 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g---~~V~avDlnp 127 (380)
-+.++++|||+||--|.++--+.++. ..|+|||+-+
T Consensus 66 ~l~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh 104 (232)
T KOG4589|consen 66 FLRPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH 104 (232)
T ss_pred ccCCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee
Confidence 35789999999999999999888874 3899999854
No 288
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=68.71 E-value=3 Score=43.02 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=48.6
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcC-------C-CCcEEEEeccH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNK-------V-DNYVRAYNMDA 153 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~-------l-~~ri~~~~~Da 153 (380)
..+.+++...|+|+|+|.....+|..+. .-+|+|+....-+++..|...++ - .+.++.++++.
T Consensus 188 l~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~~~~~~~i~gsf 260 (419)
T KOG3924|consen 188 LKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKKPNKIETIHGSF 260 (419)
T ss_pred hccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCCcCceeeccccc
Confidence 3568899999999999999998876643 78899998888888888776652 1 24477777775
No 289
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=68.47 E-value=9.5 Score=36.34 Aligned_cols=39 Identities=18% Similarity=0.101 Sum_probs=21.9
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNP 127 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp 127 (380)
+++....++.+|.|+|||-+.++-.+ ..+..|++.|+-.
T Consensus 65 ~~l~~~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva 103 (219)
T PF05148_consen 65 EWLKKRPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVA 103 (219)
T ss_dssp HHHCTS-TTS-EEEES-TT-HHHHH---S---EEEEESS-
T ss_pred HHHHhcCCCEEEEECCCchHHHHHhc-ccCceEEEeeccC
Confidence 33444556679999999999998543 2345799999864
No 290
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=68.43 E-value=9.2 Score=37.75 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=31.5
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc--C-CEEEEEeCCHHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK--G-CIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~--g-~~V~avDlnp~Aie~a~~ 135 (380)
+.+|++||-.||| +|.+++.++++ | ++|+++|.+++-++.++.
T Consensus 161 ~~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~ 207 (341)
T cd08237 161 HKDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF 207 (341)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh
Confidence 4679999988865 45455555553 3 589999999988888764
No 291
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=68.26 E-value=7 Score=37.94 Aligned_cols=46 Identities=30% Similarity=0.314 Sum_probs=33.7
Q ss_pred CCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcC
Q 046527 95 PGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNK 141 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~ 141 (380)
....||++|+|+|.-++.+|.. ++.|..=| .+..++.+..|...|+
T Consensus 86 ~~~~vlELGsGtglvG~~aa~~~~~~v~ltD-~~~~~~~L~~~~~~~~ 132 (248)
T KOG2793|consen 86 KYINVLELGSGTGLVGILAALLLGAEVVLTD-LPKVVENLKFNRDKNN 132 (248)
T ss_pred cceeEEEecCCccHHHHHHHHHhcceeccCC-chhhHHHHHHhhhhhh
Confidence 4567999999999999999985 45655444 5667777777755554
No 292
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=68.25 E-value=14 Score=36.07 Aligned_cols=96 Identities=23% Similarity=0.273 Sum_probs=60.9
Q ss_pred EEecCCccEEEEEeCCeEEEEccCceeecChHHHHHHHHH-----hccCCCCeEEEecCCcchhHHHHhhc-C--CEEEE
Q 046527 51 ILAGEDNMVTEVKQYGATFKLDYSLVYWNSRLEHEHLRII-----SQFRPGETICDMFAGIGPFAIPAAQK-G--CIVFA 122 (380)
Q Consensus 51 lLaG~~~~~~~v~E~G~~F~id~~~ff~n~rl~tE~~r~i-----~~i~~g~~VLDlfcGvG~fsl~aA~~-g--~~V~a 122 (380)
-++|+..+........+.|++ ||+-.+.-..-++ ..+++|..||=|+|++|.-.-+.+.- | .-|||
T Consensus 113 ~vYgEkRisv~~~~~kvEyRV------WnPfrSKLAA~I~gGvdnihikpGsKVLYLGAasGttVSHvSDiVGpeG~VYA 186 (317)
T KOG1596|consen 113 SVYGEKRISVENEDGKVEYRV------WNPFRSKLAAGILGGVDNIHIKPGSKVLYLGAASGTTVSHVSDIVGPEGCVYA 186 (317)
T ss_pred cccCceEEEeecCCCcEEEEE------eChHHHHHHHHhhcCccceeecCCceEEEeeccCCceeehhhcccCCCceEEE
Confidence 356665555544334455654 5543222222222 24689999999999999988888765 2 27999
Q ss_pred EeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 123 NDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 123 vDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
||.++.+=..+.--++ +-.| |-.+..||+-
T Consensus 187 VEfs~rsGRdL~nmAk--kRtN-iiPIiEDArh 216 (317)
T KOG1596|consen 187 VEFSHRSGRDLINMAK--KRTN-IIPIIEDARH 216 (317)
T ss_pred EEecccchHHHHHHhh--ccCC-ceeeeccCCC
Confidence 9999988777654432 2234 6677777754
No 293
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=66.70 E-value=5 Score=34.29 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=28.4
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPD 128 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~ 128 (380)
....+|+|||.|.+.--+.+-|..=+|+|....
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 457999999999999999999988899987553
No 294
>PRK00536 speE spermidine synthase; Provisional
Probab=66.19 E-value=14 Score=36.10 Aligned_cols=43 Identities=5% Similarity=-0.264 Sum_probs=39.3
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~N 136 (380)
..-++||=+|.|=|+.+-.+++...+|+.||++++.++.+++-
T Consensus 71 ~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~ 113 (262)
T PRK00536 71 KELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISF 113 (262)
T ss_pred CCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHH
Confidence 4568999999999999999999877999999999999999983
No 295
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=65.52 E-value=16 Score=37.68 Aligned_cols=48 Identities=19% Similarity=0.205 Sum_probs=34.0
Q ss_pred HHhccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHH
Q 046527 89 IISQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 89 ~i~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na 137 (380)
.+..+.++++||-+.+| |--++.++.. .++|+|||+||.-...++--.
T Consensus 29 ~aL~i~~~d~vl~ItSa-G~N~L~yL~~~P~~I~aVDlNp~Q~aLleLKl 77 (380)
T PF11899_consen 29 EALNIGPDDRVLTITSA-GCNALDYLLAGPKRIHAVDLNPAQNALLELKL 77 (380)
T ss_pred HHhCCCCCCeEEEEccC-CchHHHHHhcCCceEEEEeCCHHHHHHHHHHH
Confidence 34568899988888543 4444444444 469999999999888777544
No 296
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=64.32 E-value=15 Score=34.72 Aligned_cols=76 Identities=12% Similarity=0.015 Sum_probs=39.1
Q ss_pred eeecChHHHHHHHHHhccCCCCeEEEecCCcchhHHHHhhc------CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 046527 76 VYWNSRLEHEHLRIISQFRPGETICDMFAGIGPFAIPAAQK------GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAY 149 (380)
Q Consensus 76 ff~n~rl~tE~~r~i~~i~~g~~VLDlfcGvG~fsl~aA~~------g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~ 149 (380)
..|.+.-..-..+++-.++| ++|+++|.--|+=++..|.. .++|+++|++....... .++.+.+..+|+++
T Consensus 14 i~q~P~Dm~~~qeli~~~kP-d~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~~--a~e~hp~~~rI~~i 90 (206)
T PF04989_consen 14 IIQYPQDMVAYQELIWELKP-DLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNRK--AIESHPMSPRITFI 90 (206)
T ss_dssp ESS-HHHHHHHHHHHHHH---SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEE
T ss_pred hhcCHHHHHHHHHHHHHhCC-CeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhchH--HHhhccccCceEEE
Confidence 34444433233344445555 69999999999888877642 35999999954433221 11224556789999
Q ss_pred eccHH
Q 046527 150 NMDAR 154 (380)
Q Consensus 150 ~~Da~ 154 (380)
+||..
T Consensus 91 ~Gds~ 95 (206)
T PF04989_consen 91 QGDSI 95 (206)
T ss_dssp ES-SS
T ss_pred ECCCC
Confidence 99864
No 297
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=64.07 E-value=8.4 Score=31.95 Aligned_cols=31 Identities=32% Similarity=0.470 Sum_probs=26.9
Q ss_pred CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 105 GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 105 GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
|+|.+++.+|+. |++|+++|.++.-.+.+++
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~ 32 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKE 32 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHH
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHh
Confidence 679999998875 7899999999999888764
No 298
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=62.97 E-value=9.7 Score=37.00 Aligned_cols=54 Identities=17% Similarity=0.183 Sum_probs=40.4
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHc-CCCCcEEEEe
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVN-KVDNYVRAYN 150 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN-~l~~ri~~~~ 150 (380)
++-++||+|.| +--|.-. ..|.+-+|-|+++.+++.|+.++..| ++...|++..
T Consensus 78 ~~i~~LDIGvG--AnCIYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~ 136 (292)
T COG3129 78 KNIRILDIGVG--ANCIYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRR 136 (292)
T ss_pred CceEEEeeccC--cccccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEe
Confidence 45678999554 4444322 13568999999999999999999999 8887677654
No 299
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=62.52 E-value=15 Score=34.65 Aligned_cols=62 Identities=13% Similarity=0.079 Sum_probs=47.4
Q ss_pred cCCCC-eEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 93 FRPGE-TICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 93 i~~g~-~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+.. .||+++||+|--+.++|+.-. .=.--|.++......+..+...++.|-...+..|+.
T Consensus 22 l~~~~~~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~ 86 (204)
T PF06080_consen 22 LPDSGTRVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVS 86 (204)
T ss_pred hCccCceEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecC
Confidence 34444 499999999999999998743 556679999998888888888888774445555553
No 300
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=60.94 E-value=11 Score=36.76 Aligned_cols=42 Identities=14% Similarity=0.086 Sum_probs=36.9
Q ss_pred CCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~N 136 (380)
....++|+|||.|.++-++...+. +++-+|.+-.+++.++..
T Consensus 72 ~fp~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~ 114 (325)
T KOG2940|consen 72 SFPTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDA 114 (325)
T ss_pred hCcceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhcc
Confidence 346899999999999999988876 899999999999988754
No 301
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=60.36 E-value=18 Score=36.39 Aligned_cols=46 Identities=28% Similarity=0.442 Sum_probs=36.7
Q ss_pred hccCCCCeEEEecCCc-chhHHHHhhc-CC-EEEEEeCCHHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGI-GPFAIPAAQK-GC-IVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGv-G~fsl~aA~~-g~-~V~avDlnp~Aie~a~~N 136 (380)
..+.+|++||..+||. |.+++.+|+. |. +|++++.+++..+.+++.
T Consensus 180 ~~~~~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~ 228 (386)
T cd08283 180 AEVKPGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSH 228 (386)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHc
Confidence 4567889999998876 7777777765 55 699999999998888764
No 302
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=59.93 E-value=19 Score=35.36 Aligned_cols=43 Identities=21% Similarity=0.323 Sum_probs=31.0
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+|++||-.||| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 167 ~~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~ 212 (343)
T PRK09880 167 DLQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLARE 212 (343)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHH
Confidence 3468888887664 45555555554 66 79999999998888764
No 303
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=59.80 E-value=4.4 Score=38.74 Aligned_cols=40 Identities=28% Similarity=0.189 Sum_probs=35.4
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
..++||+|||-|-++...+-....|+|-|++..+...+++
T Consensus 113 ~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~k 152 (288)
T KOG3987|consen 113 PVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKK 152 (288)
T ss_pred CeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhh
Confidence 4689999999999999998877789999999999887765
No 304
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=58.72 E-value=20 Score=35.15 Aligned_cols=45 Identities=13% Similarity=0.095 Sum_probs=33.5
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+++|++||-.|+| +|.+++.+|+. |++|++++.+++-.+.+++
T Consensus 161 ~~~~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~ 207 (329)
T TIGR02822 161 ASLPPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALA 207 (329)
T ss_pred cCCCCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 456789999988764 55555556654 6799999999998877765
No 305
>PF04378 RsmJ: Ribosomal RNA small subunit methyltransferase D, RsmJ; InterPro: IPR007473 This is a bacterial protein of unknown function, possibly secreted.; PDB: 2OO3_A.
Probab=58.21 E-value=24 Score=34.18 Aligned_cols=70 Identities=20% Similarity=0.275 Sum_probs=47.1
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+..+.++.. +..|.|+=.++..+.+..-+.+.+|+-|..++.++.|+.. ..++++.+.|+.+.+..+.
T Consensus 51 ~~v~~~n~~~~-l~~YPGSP~ia~~llR~qDrl~l~ELHp~d~~~L~~~~~~---~~~v~v~~~DG~~~l~all 120 (245)
T PF04378_consen 51 DAVRALNPDGE-LRFYPGSPAIAARLLREQDRLVLFELHPQDFEALKKNFRR---DRRVRVHHRDGYEGLKALL 120 (245)
T ss_dssp HHHHHHSSSSS---EEE-HHHHHHHHS-TTSEEEEE--SHHHHHHHTTS--T---TS-EEEE-S-HHHHHHHH-
T ss_pred HHHHHhccCCC-cCcCCCCHHHHHHhCCccceEEEEecCchHHHHHHHHhcc---CCccEEEeCchhhhhhhhC
Confidence 34444444433 7899999999999988888999999999999999998764 3479999999999998876
No 306
>PLN02740 Alcohol dehydrogenase-like
Probab=57.65 E-value=18 Score=36.20 Aligned_cols=45 Identities=20% Similarity=0.358 Sum_probs=32.3
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.|+| +|.+++.+|+ .|+ +|+++|.+++-++.+++
T Consensus 194 ~~~~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~ 241 (381)
T PLN02740 194 ANVQAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKE 241 (381)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHH
Confidence 457789999888654 4444444554 366 69999999998888754
No 307
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=57.57 E-value=41 Score=32.62 Aligned_cols=62 Identities=10% Similarity=0.089 Sum_probs=49.4
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.-..+.|..+|-|-|+++-.+...+. +...||+++..+.-++.=.+.. ..+..+..+|+..+
T Consensus 48 ~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa--~~~~~IHh~D~LR~ 110 (326)
T KOG0821|consen 48 NLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAA--PGKLRIHHGDVLRF 110 (326)
T ss_pred ccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcC--CcceEEecccccee
Confidence 34567999999999999999988776 8999999999888777655533 33678888998665
No 308
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=56.72 E-value=22 Score=35.53 Aligned_cols=45 Identities=27% Similarity=0.365 Sum_probs=33.0
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.||| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~ 228 (368)
T TIGR02818 181 AKVEEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKK 228 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 356789999888764 45555555654 66 79999999998888754
No 309
>PRK07326 short chain dehydrogenase; Provisional
Probab=56.05 E-value=44 Score=30.35 Aligned_cols=56 Identities=14% Similarity=0.112 Sum_probs=39.2
Q ss_pred CCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.+||-.| |+|.+|..+++ .|.+|++++.++.....+...+... .++.++.+|+.+
T Consensus 6 ~~~ilItG-atg~iG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~---~~~~~~~~D~~~ 65 (237)
T PRK07326 6 GKVALITG-GSKGIGFAIAEALLAEGYKVAITARDQKELEEAAAELNNK---GNVLGLAADVRD 65 (237)
T ss_pred CCEEEEEC-CCCcHHHHHHHHHHHCCCEEEEeeCCHHHHHHHHHHHhcc---CcEEEEEccCCC
Confidence 56677666 57777776654 4779999999998777666655432 347788888643
No 310
>PLN02780 ketoreductase/ oxidoreductase
Probab=53.86 E-value=47 Score=32.71 Aligned_cols=60 Identities=18% Similarity=0.127 Sum_probs=39.6
Q ss_pred CCCeEEEecCCcc---hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIG---PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG---~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|.++|-.||..| .++..+++.|++|+.++.+++.++.+.+.++...-..++..+..|+.
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vil~~R~~~~l~~~~~~l~~~~~~~~~~~~~~Dl~ 114 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLVLVARNPDKLKDVSDSIQSKYSKTQIKTVVVDFS 114 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCcEEEEEEEECC
Confidence 3678888876544 23444556788999999999998887777654321123566666653
No 311
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=53.53 E-value=27 Score=34.42 Aligned_cols=45 Identities=24% Similarity=0.520 Sum_probs=32.7
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++|+-.||| +|.+++.+|+. |++|+++|.+++-.+.+++
T Consensus 162 ~~~~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~ 208 (349)
T TIGR03201 162 AGLKKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKG 208 (349)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 346789999998874 35555555543 6799999999998887753
No 312
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=52.95 E-value=42 Score=30.63 Aligned_cols=45 Identities=27% Similarity=0.375 Sum_probs=33.9
Q ss_pred hccCCCCeEEEecCCc-chhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGI-GPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGv-G~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.++++||..++|. |...+.+++. |.+|++++.+++..+.++.
T Consensus 130 ~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~ 176 (271)
T cd05188 130 GVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKE 176 (271)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 3447889999998884 6666666654 6799999999988777643
No 313
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=52.86 E-value=32 Score=32.99 Aligned_cols=45 Identities=29% Similarity=0.457 Sum_probs=34.4
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.++++||..++| +|.+++.+|+. |.+|++++.+++..+.++.
T Consensus 161 ~~~~~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~ 207 (338)
T cd08254 161 GEVKPGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKE 207 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHH
Confidence 346788888887765 57777777764 7799999999998887754
No 314
>PRK07063 short chain dehydrogenase; Provisional
Probab=51.79 E-value=68 Score=29.75 Aligned_cols=59 Identities=17% Similarity=0.076 Sum_probs=40.1
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++++|-.|+ +|.++..++ +.|++|+.++.+++..+.+...+...+...++.++..|+.
T Consensus 6 ~~k~vlVtGa-s~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~ 68 (260)
T PRK07063 6 AGKVALVTGA-AQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVT 68 (260)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCC
Confidence 3567777765 455555544 5688999999999888777766654223345778888864
No 315
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=51.73 E-value=15 Score=37.62 Aligned_cols=59 Identities=22% Similarity=0.089 Sum_probs=46.2
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEE
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAY 149 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~ 149 (380)
....++..++|++||+|..+..++.. ++.+++++.|+..+..+..-....++.++..+.
T Consensus 106 ~~~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~ 165 (364)
T KOG1269|consen 106 ESCFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFV 165 (364)
T ss_pred hcCcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhccee
Confidence 45678889999999999999998875 479999999998887777655555565544443
No 316
>PRK05867 short chain dehydrogenase; Provisional
Probab=51.70 E-value=54 Score=30.36 Aligned_cols=57 Identities=16% Similarity=0.025 Sum_probs=39.4
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|+++|-.|++ |.++..++ +.|++|+.++.+++..+.+...+...+ .++.++.+|+.
T Consensus 8 ~~k~vlVtGas-~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~ 68 (253)
T PRK05867 8 HGKRALITGAS-TGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVS 68 (253)
T ss_pred CCCEEEEECCC-chHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCC
Confidence 46778777754 44555444 558899999999988887776665443 34777888864
No 317
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=51.55 E-value=20 Score=35.14 Aligned_cols=61 Identities=16% Similarity=0.057 Sum_probs=37.4
Q ss_pred CeEEEecCCcch--hHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHH
Q 046527 97 ETICDMFAGIGP--FAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIR 158 (380)
Q Consensus 97 ~~VLDlfcGvG~--fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~ 158 (380)
...||+|||.=+ -.-..|+. .++|+-||.+|-.+..++.=+..+.- .+..++.+|+++--.
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~ 135 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEA 135 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHH
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHH
Confidence 589999999432 23344443 46999999999999988877665532 347899999987643
No 318
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=51.07 E-value=34 Score=33.94 Aligned_cols=44 Identities=23% Similarity=0.353 Sum_probs=35.7
Q ss_pred hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~ 134 (380)
..+.+|++||-.++ |+|.+++.+|+. |++|++++.+++-.+.++
T Consensus 154 ~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~ 200 (348)
T PLN03154 154 CSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLK 200 (348)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHH
Confidence 45788999988886 488888888875 779999999998877765
No 319
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=50.66 E-value=30 Score=34.42 Aligned_cols=45 Identities=31% Similarity=0.437 Sum_probs=32.3
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.|+| +|.+++.+|+. |+ .|+++|.+++-.+.+++
T Consensus 187 ~~i~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~ 234 (371)
T cd08281 187 AGVRPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARE 234 (371)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHH
Confidence 356788888887654 44455555553 66 69999999998888764
No 320
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=50.56 E-value=64 Score=29.67 Aligned_cols=58 Identities=10% Similarity=-0.055 Sum_probs=39.4
Q ss_pred CCCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 94 RPGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
.++.+||-.| |+|.++..++ +.|++|++++.+++..+.+...++..+.. ++.++..|+
T Consensus 10 ~~~k~vlItG-~~g~iG~~la~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~d~ 71 (247)
T PRK08945 10 LKDRIILVTG-AGDGIGREAALTYARHGATVILLGRTEEKLEAVYDEIEAAGGP-QPAIIPLDL 71 (247)
T ss_pred cCCCEEEEeC-CCchHHHHHHHHHHHCCCcEEEEeCCHHHHHHHHHHHHhcCCC-CceEEEecc
Confidence 4567777776 5677776655 45789999999998877766666544322 356666665
No 321
>TIGR00571 dam DNA adenine methylase (dam). All proteins in this family for which functions are known are DNA-adenine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The DNA adenine methylase (dam) of E. coli and related species is instrumental in distinguishing the newly synthesized strand during DNA replication for methylation-directed mismatch repair. This family includes several phage methylases and a number of different restriction enzyme chromosomal site-specific modification systems.
Probab=50.09 E-value=17 Score=35.09 Aligned_cols=43 Identities=19% Similarity=0.230 Sum_probs=32.2
Q ss_pred HhccCC-CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527 90 ISQFRP-GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 90 i~~i~~-g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~ 134 (380)
+..+.+ ..+.+|+|||.|...+.+.. ..++.+|+|++.+..-+
T Consensus 19 ~~~~p~~~~~yvEPF~Gggsv~l~~~~--~~~~lND~n~~Li~~~~ 62 (266)
T TIGR00571 19 KKHLPKNFNCLVEPFVGGGAVFFNLNP--KRYLLNDINEDLINLYK 62 (266)
T ss_pred HHhcCcccCEEEEecCCcchhheeecC--cEEEEecCCHHHHHHHH
Confidence 334443 36899999999999986643 36888999999886533
No 322
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=50.03 E-value=34 Score=33.75 Aligned_cols=42 Identities=17% Similarity=0.091 Sum_probs=29.4
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeC---CHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDL---NPDSVHYLK 134 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDl---np~Aie~a~ 134 (380)
+.+|++||-.|+| +|.+++.+|+. |++|++++. ++.-.+.++
T Consensus 170 ~~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~ 216 (355)
T cd08230 170 TWNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVE 216 (355)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHH
Confidence 4578888888765 45555656654 679999987 677766655
No 323
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=49.92 E-value=31 Score=34.15 Aligned_cols=45 Identities=20% Similarity=0.404 Sum_probs=32.1
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.|+| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 172 ~~~~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~ 219 (358)
T TIGR03451 172 GGVKRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWARE 219 (358)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 356789999988653 34444555554 66 59999999998888753
No 324
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=49.47 E-value=34 Score=33.89 Aligned_cols=45 Identities=24% Similarity=0.360 Sum_probs=31.3
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++| +|.+++.+|+. |+ +|++++.+++-.+.+++
T Consensus 183 ~~~~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~ 230 (369)
T cd08301 183 AKVKKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKK 230 (369)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHH
Confidence 456789998887653 34444444443 66 79999999988887743
No 325
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=49.43 E-value=53 Score=29.98 Aligned_cols=55 Identities=15% Similarity=0.073 Sum_probs=37.0
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+||=.| |+|.++..++ .+|.+|++++.++...+.+...+.. ..++.++.+|+.
T Consensus 5 ~~~vlItG-asg~iG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~~~---~~~~~~~~~D~~ 63 (251)
T PRK07231 5 GKVAIVTG-ASSGIGEGIARRFAAEGARVVVTDRNEEAAERVAAEILA---GGRAIAVAADVS 63 (251)
T ss_pred CcEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHhc---CCeEEEEECCCC
Confidence 45666665 4455555544 4588999999999877776665543 234778888864
No 326
>PRK07062 short chain dehydrogenase; Provisional
Probab=49.22 E-value=70 Score=29.77 Aligned_cols=60 Identities=8% Similarity=0.034 Sum_probs=38.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|+++|-.|++ |.++..++ ..|++|+.++.+++..+.+.+.+....-..++.++..|+.+
T Consensus 7 ~~k~~lItGas-~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 70 (265)
T PRK07062 7 EGRVAVVTGGS-SGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLD 70 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCC
Confidence 35677777754 44554444 56889999999998877766655433212247778888644
No 327
>PRK07102 short chain dehydrogenase; Provisional
Probab=49.21 E-value=56 Score=29.96 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=38.5
Q ss_pred eEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 98 TICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+++-.| |+|.++..++ +.|.+|++++.+++..+.+..++...+ ..++.++..|+.+.
T Consensus 3 ~vlItG-as~giG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~~ 63 (243)
T PRK07102 3 KILIIG-ATSDIARACARRYAAAGARLYLAARDVERLERLADDLRARG-AVAVSTHELDILDT 63 (243)
T ss_pred EEEEEc-CCcHHHHHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHhc-CCeEEEEecCCCCh
Confidence 455444 5677777655 457899999999987766665554433 23588888887543
No 328
>PRK06194 hypothetical protein; Provisional
Probab=48.26 E-value=59 Score=30.66 Aligned_cols=57 Identities=14% Similarity=0.145 Sum_probs=37.7
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++|-.| |+|.+|..++ +.|++|+.+|.+++..+.+...+...+ .++.++.+|+.+
T Consensus 6 ~k~vlVtG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~d 66 (287)
T PRK06194 6 GKVAVITG-AASGFGLAFARIGAALGMKLVLADVQQDALDRAVAELRAQG--AEVLGVRTDVSD 66 (287)
T ss_pred CCEEEEeC-CccHHHHHHHHHHHHCCCEEEEEeCChHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 45677444 5566666655 458899999999877666555444332 247788888743
No 329
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=47.83 E-value=48 Score=32.02 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=35.5
Q ss_pred hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||=.++ |+|.+++.+|+. |++|++++.+++-.+.+++
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~ 181 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKK 181 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 45788999988773 578888877765 7799999999988877753
No 330
>PRK07904 short chain dehydrogenase; Provisional
Probab=47.27 E-value=63 Score=30.31 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=40.5
Q ss_pred cCCCCeEEEecCCcchhHHHHhh----cC-CEEEEEeCCHHH-HHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQ----KG-CIVFANDLNPDS-VHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~----~g-~~V~avDlnp~A-ie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+..+.+||-.|| +|.+|..+++ .| .+|+.++.+++. ++.+.+.+...+-. +++++..|+.+
T Consensus 5 ~~~~~~vlItGa-s~giG~~la~~l~~~gg~~V~~~~r~~~~~~~~~~~~l~~~~~~-~v~~~~~D~~~ 71 (253)
T PRK07904 5 VGNPQTILLLGG-TSEIGLAICERYLKNAPARVVLAALPDDPRRDAAVAQMKAAGAS-SVEVIDFDALD 71 (253)
T ss_pred cCCCcEEEEEcC-CcHHHHHHHHHHHhcCCCeEEEEeCCcchhHHHHHHHHHhcCCC-ceEEEEecCCC
Confidence 456677877776 5666666553 44 699999998874 66555555544422 48888888743
No 331
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=46.96 E-value=35 Score=32.51 Aligned_cols=43 Identities=30% Similarity=0.262 Sum_probs=29.2
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+|++||-.|+| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 118 ~~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~ 163 (280)
T TIGR03366 118 DLKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALS 163 (280)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 3478888887653 44444445543 66 49999999988777665
No 332
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=46.91 E-value=37 Score=33.02 Aligned_cols=44 Identities=25% Similarity=0.267 Sum_probs=30.4
Q ss_pred ccCCCCeEEEecCC-cchhHHHHhh-cCCE-EEEEeCCHHHHHHHHH
Q 046527 92 QFRPGETICDMFAG-IGPFAIPAAQ-KGCI-VFANDLNPDSVHYLKI 135 (380)
Q Consensus 92 ~i~~g~~VLDlfcG-vG~fsl~aA~-~g~~-V~avDlnp~Aie~a~~ 135 (380)
.+.+|++||-.++| +|.+++.+|+ .|++ |++++.+++-.+.+++
T Consensus 160 ~~~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~ 206 (339)
T cd08239 160 GVSGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKA 206 (339)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHH
Confidence 45678888888653 4444444554 3666 9999999988777653
No 333
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=46.13 E-value=49 Score=30.00 Aligned_cols=41 Identities=20% Similarity=0.149 Sum_probs=28.7
Q ss_pred EEEecCCcc--hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527 99 ICDMFAGIG--PFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 99 VLDlfcGvG--~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l 139 (380)
|.-+|+|+= .++..+|..|..|..+|.++++++.+++.++.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 44 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIER 44 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHH
Confidence 455666632 34455667789999999999999988887764
No 334
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=45.91 E-value=44 Score=33.22 Aligned_cols=45 Identities=29% Similarity=0.490 Sum_probs=31.6
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++| +|.+++.+|+ .|+ .|+++|.+++-.+.+++
T Consensus 182 ~~~~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~ 229 (368)
T cd08300 182 AKVEPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKK 229 (368)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 456789999888653 4444444554 367 79999999998887753
No 335
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=45.88 E-value=27 Score=34.63 Aligned_cols=58 Identities=21% Similarity=0.253 Sum_probs=45.5
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..+.+|....|+|+--|+.+..+.+++..|++||--+-+-... . .+.|+-...|.++|
T Consensus 207 ~rL~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~-----d---tg~v~h~r~DGfk~ 264 (358)
T COG2933 207 KRLAPGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLM-----D---TGQVTHLREDGFKF 264 (358)
T ss_pred hhhcCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhh-----c---ccceeeeeccCccc
Confidence 4567899999999999999999999999999999777544332 1 23467777777765
No 336
>PRK08339 short chain dehydrogenase; Provisional
Probab=45.70 E-value=83 Score=29.62 Aligned_cols=59 Identities=14% Similarity=0.084 Sum_probs=39.0
Q ss_pred CCCeEEEecCCcchhHHH----HhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIP----AAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~----aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|+++|-.|++ |.++.. +++.|++|+.++.+++..+.+.+.+.... ..++.++..|+.+
T Consensus 7 ~~k~~lItGas-~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~ 69 (263)
T PRK08339 7 SGKLAFTTASS-KGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTK 69 (263)
T ss_pred CCCEEEEeCCC-CcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCC
Confidence 46677766654 444554 44568899999999988877766654321 2247788888754
No 337
>PRK08862 short chain dehydrogenase; Provisional
Probab=45.61 E-value=74 Score=29.48 Aligned_cols=57 Identities=12% Similarity=0.049 Sum_probs=39.3
Q ss_pred CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
.|.++|-.|++.|. ++..+++.|++|+.++.+++.++.+.+.+...+. .+..+..|+
T Consensus 4 ~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~r~~~~l~~~~~~i~~~~~--~~~~~~~D~ 63 (227)
T PRK08862 4 KSSIILITSAGSVLGRTISCHFARLGATLILCDQDQSALKDTYEQCSALTD--NVYSFQLKD 63 (227)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcCC--CeEEEEccC
Confidence 35677777766654 3445566788999999999988877766655442 355666664
No 338
>PRK06172 short chain dehydrogenase; Provisional
Probab=45.27 E-value=95 Score=28.55 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=39.8
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.++|-.|+ +|.++..++ +.|++|+.++.+++..+.+.+.++..+ .++.++.+|+.
T Consensus 6 ~~k~ilItGa-s~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 66 (253)
T PRK06172 6 SGKVALVTGG-AAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVT 66 (253)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCC
Confidence 3567777775 455555544 457899999999988777666664433 35788888874
No 339
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=45.11 E-value=50 Score=31.57 Aligned_cols=45 Identities=27% Similarity=0.345 Sum_probs=35.1
Q ss_pred hccCCCCeEEEec--CCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMF--AGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlf--cGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.+ .|+|.+++.+|+. |++|++++.+++-.+.++.
T Consensus 139 ~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~ 186 (329)
T cd08294 139 CKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKE 186 (329)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHH
Confidence 4567899888776 3577777777764 7799999999988887764
No 340
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=44.54 E-value=62 Score=31.48 Aligned_cols=46 Identities=26% Similarity=0.351 Sum_probs=36.2
Q ss_pred hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHH
Q 046527 91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~N 136 (380)
..+.+|++||=.++ |+|.+++.+|+. |++|++...+++-.+.++..
T Consensus 147 ~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~ 195 (338)
T cd08295 147 CKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNK 195 (338)
T ss_pred cCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHh
Confidence 45788999998875 577787777764 77999999999888777653
No 341
>PRK07677 short chain dehydrogenase; Provisional
Probab=44.45 E-value=1e+02 Score=28.39 Aligned_cols=55 Identities=15% Similarity=0.114 Sum_probs=36.1
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+++|-.|+ +|.++..++ +.|++|+..+.++...+.+...+...+ .++.++.+|+.
T Consensus 2 k~~lItG~-s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 60 (252)
T PRK07677 2 KVVIITGG-SSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVR 60 (252)
T ss_pred CEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCC
Confidence 45665554 444555444 558899999999887776665554333 35788888863
No 342
>PRK06914 short chain dehydrogenase; Provisional
Probab=44.42 E-value=71 Score=30.00 Aligned_cols=59 Identities=17% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++|-.| |+|.++..++ ..|++|++++.+++..+.....+...+...++.++.+|+.+
T Consensus 3 ~k~~lItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d 65 (280)
T PRK06914 3 KKIAIVTG-ASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTD 65 (280)
T ss_pred CCEEEEEC-CCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCC
Confidence 44565555 4555565554 45889999999998877766655554544568888888754
No 343
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=44.08 E-value=45 Score=34.74 Aligned_cols=44 Identities=14% Similarity=0.188 Sum_probs=31.1
Q ss_pred ccCCCCeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHH
Q 046527 92 QFRPGETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 92 ~i~~g~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~ 135 (380)
...+|++|+-+|+| +|...+.+++ .|++|+.+|.+|.-.+.|+.
T Consensus 198 ~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~ 243 (413)
T cd00401 198 VMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAM 243 (413)
T ss_pred CCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHh
Confidence 34579999999887 3444444443 47799999999987666653
No 344
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=43.94 E-value=11 Score=34.68 Aligned_cols=49 Identities=24% Similarity=0.232 Sum_probs=41.0
Q ss_pred CCCeEEEecCC-cchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHHHcCCC
Q 046527 95 PGETICDMFAG-IGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAKVNKVD 143 (380)
Q Consensus 95 ~g~~VLDlfcG-vG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~lN~l~ 143 (380)
.|.+||++|+| +|.-++.+|.+.- .|.--|-|..+++..++-+..|...
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s 80 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMAS 80 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhccccc
Confidence 46899999999 6777888887753 8999999999999999988888544
No 345
>KOG1098 consensus Putative SAM-dependent rRNA methyltransferase SPB1 [RNA processing and modification; General function prediction only]
Probab=43.74 E-value=21 Score=39.08 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=31.4
Q ss_pred hccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNP 127 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp 127 (380)
..+.++..||||||--|++.-.+++. |.-|+|||+-|
T Consensus 40 ~fl~~a~~vlDLcaAPG~W~QVA~q~~pv~slivGvDl~p 79 (780)
T KOG1098|consen 40 KFLEKAHVVLDLCAAPGGWLQVASQSMPVGSLIVGVDLVP 79 (780)
T ss_pred ccccccchheeeccCCcHHHHHHHHhCCCCceEEEeeeee
Confidence 44678999999999999999888875 45899999966
No 346
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=43.53 E-value=85 Score=29.05 Aligned_cols=58 Identities=12% Similarity=0.046 Sum_probs=40.9
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++.++|-.| |+|.++..+++ .|++|+.++.+++..+.+...+...+ .++.++.+|+.+
T Consensus 11 ~~k~ilItG-a~g~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~Dl~d 72 (259)
T PRK08213 11 SGKTALVTG-GSRGLGLQIAEALGEAGARVVLSARKAEELEEAAAHLEALG--IDALWIAADVAD 72 (259)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEccCCC
Confidence 456777776 56777777664 47899999999987777666654433 346778888743
No 347
>PRK08703 short chain dehydrogenase; Provisional
Probab=41.99 E-value=98 Score=28.26 Aligned_cols=57 Identities=12% Similarity=-0.063 Sum_probs=37.5
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
++.+|+-.| |+|.++..++ ..|.+|+.++.+++..+.+...+...+-. .+.++..|+
T Consensus 5 ~~k~vlItG-~sggiG~~la~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~~~-~~~~~~~D~ 65 (239)
T PRK08703 5 SDKTILVTG-ASQGLGEQVAKAYAAAGATVILVARHQKKLEKVYDAIVEAGHP-EPFAIRFDL 65 (239)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCChHHHHHHHHHHHHcCCC-CcceEEeee
Confidence 356777777 5677776655 45789999999998877666665443322 245566665
No 348
>PRK08251 short chain dehydrogenase; Provisional
Probab=41.60 E-value=1.2e+02 Score=27.69 Aligned_cols=58 Identities=16% Similarity=0.018 Sum_probs=39.0
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++|-.| |+|.++..++ +.|++|+.++.++...+.+...+....-..++.++.+|+.+
T Consensus 3 k~vlItG-as~giG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (248)
T PRK08251 3 QKILITG-ASSGLGAGMAREFAAKGRDLALCARRTDRLEELKAELLARYPGIKVAVAALDVND 64 (248)
T ss_pred CEEEEEC-CCCHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEcCCCC
Confidence 4566555 5777777655 44789999999998887766655433212357888888754
No 349
>PRK12939 short chain dehydrogenase; Provisional
Probab=41.25 E-value=95 Score=28.26 Aligned_cols=58 Identities=16% Similarity=0.109 Sum_probs=39.4
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++.++| +..|+|.++..+++ .|++|++++.+++..+.+...++.- ..++.++.+|+.+
T Consensus 6 ~~~~vl-ItGa~g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~ 67 (250)
T PRK12939 6 AGKRAL-VTGAARGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAA--GGRAHAIAADLAD 67 (250)
T ss_pred CCCEEE-EeCCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCC
Confidence 356676 44457788877664 5789999999988777665554322 2347888888743
No 350
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=41.21 E-value=2.6e+02 Score=26.92 Aligned_cols=45 Identities=24% Similarity=0.304 Sum_probs=33.9
Q ss_pred ccCCC--CeEEEecC--CcchhHHHHhhc-CC-EEEEEeCCHHHHHHHHHH
Q 046527 92 QFRPG--ETICDMFA--GIGPFAIPAAQK-GC-IVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 92 ~i~~g--~~VLDlfc--GvG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~N 136 (380)
.+.+| ++||-.++ |+|.+++.+|+. |+ +|++++.+++-.+.+++.
T Consensus 149 ~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~ 199 (345)
T cd08293 149 HITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSE 199 (345)
T ss_pred cCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHh
Confidence 45555 88887775 588888877765 77 799999998877776653
No 351
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=40.98 E-value=93 Score=28.73 Aligned_cols=57 Identities=16% Similarity=0.074 Sum_probs=40.3
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+++||=.| |+|.++..+++ .|.+|+..+.++...+.+...++..+ .++.++..|+.
T Consensus 9 ~~k~vlItG-a~g~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~i~~~~--~~~~~~~~D~~ 69 (255)
T PRK07523 9 TGRRALVTG-SSQGIGYALAEGLAQAGAEVILNGRDPAKLAAAAESLKGQG--LSAHALAFDVT 69 (255)
T ss_pred CCCEEEEEC-CcchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--ceEEEEEccCC
Confidence 466777666 56777776664 57899999999988777766665443 24677878864
No 352
>PLN02827 Alcohol dehydrogenase-like
Probab=40.85 E-value=54 Score=32.94 Aligned_cols=45 Identities=20% Similarity=0.376 Sum_probs=31.0
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.|+| +|.+++.+|+ .|. .|+++|.+++-.+.|++
T Consensus 189 ~~~~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~ 236 (378)
T PLN02827 189 ADVSKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKT 236 (378)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHH
Confidence 356789999888653 4444455554 366 69999999987777643
No 353
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=40.78 E-value=50 Score=26.81 Aligned_cols=47 Identities=26% Similarity=0.301 Sum_probs=34.1
Q ss_pred ecCCcchhHHHHhhc---CC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 102 MFAGIGPFAIPAAQK---GC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 102 lfcGvG~fsl~aA~~---g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
+-||.|.++..+++. +. .|+.+|.+++.++.++.. + +.++.+|+.+.
T Consensus 2 vI~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~----~----~~~i~gd~~~~ 52 (116)
T PF02254_consen 2 VIIGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREE----G----VEVIYGDATDP 52 (116)
T ss_dssp EEES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHT----T----SEEEES-TTSH
T ss_pred EEEcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhc----c----cccccccchhh
Confidence 347888999888753 44 899999999998887643 2 56888998654
No 354
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=40.49 E-value=57 Score=32.38 Aligned_cols=45 Identities=29% Similarity=0.400 Sum_probs=31.0
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++| +|.+++.+|+. |+ +|+++|.+++-.+.+++
T Consensus 180 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~ 227 (365)
T cd08277 180 AKVEPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKE 227 (365)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 356789999887653 34444444543 66 79999999988887753
No 355
>PRK09242 tropinone reductase; Provisional
Probab=40.38 E-value=1.5e+02 Score=27.43 Aligned_cols=60 Identities=15% Similarity=0.069 Sum_probs=40.1
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.++++|-.|+ +|.++..++ +.|++|+.++.+++..+.+..++....-..++.++.+|+.+
T Consensus 8 ~~k~~lItGa-~~gIG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 71 (257)
T PRK09242 8 DGQTALITGA-SKGIGLAIAREFLGLGADVLIVARDADALAQARDELAEEFPEREVHGLAADVSD 71 (257)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhCCCCeEEEEECCCCC
Confidence 3667777765 444444444 45889999999998887777776543212357788888743
No 356
>PRK06197 short chain dehydrogenase; Provisional
Probab=40.36 E-value=1e+02 Score=29.57 Aligned_cols=60 Identities=15% Similarity=0.020 Sum_probs=38.6
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+++||-.| |+|.+|..++ +.|.+|+.+..+++..+.+.+.+....-..++.++..|+.+
T Consensus 15 ~~k~vlItG-as~gIG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d 78 (306)
T PRK06197 15 SGRVAVVTG-ANTGLGYETAAALAAKGAHVVLAVRNLDKGKAAAARITAATPGADVTLQELDLTS 78 (306)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEECCCCC
Confidence 456777555 5666666655 45789999999987776655555422112347788888743
No 357
>PRK05854 short chain dehydrogenase; Provisional
Probab=40.34 E-value=1.1e+02 Score=29.75 Aligned_cols=59 Identities=14% Similarity=0.013 Sum_probs=38.6
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|++++-.|+ +|.+|..++ +.|++|+.+..+++..+.+...+....-...+.++..|+.
T Consensus 13 ~gk~~lITGa-s~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~ 75 (313)
T PRK05854 13 SGKRAVVTGA-SDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLS 75 (313)
T ss_pred CCCEEEEeCC-CChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCC
Confidence 3667776665 455555544 4688999999998877766666543321224778888863
No 358
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=40.24 E-value=64 Score=31.48 Aligned_cols=41 Identities=15% Similarity=0.016 Sum_probs=31.9
Q ss_pred eEEEecCC--cchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 98 TICDMFAG--IGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 98 ~VLDlfcG--vG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
+|.-+|+| -+.++..++..|..|+.+|.++++++.++..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~ 49 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIE 49 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHH
Confidence 67778777 345556667778999999999999998776644
No 359
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=39.97 E-value=1e+02 Score=28.23 Aligned_cols=56 Identities=16% Similarity=0.154 Sum_probs=39.5
Q ss_pred CCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+|| +..|+|.++..+++ .|.+|++++.++...+.+...+...+ .++.++.+|..
T Consensus 4 ~~~vl-ItG~sg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~ 63 (258)
T PRK12429 4 GKVAL-VTGAASGIGLEIALALAKEGAKVVIADLNDEAAAAAAEALQKAG--GKAIGVAMDVT 63 (258)
T ss_pred CCEEE-EECCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCC
Confidence 45566 44467888887775 47799999999988877666665433 34777888864
No 360
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=39.49 E-value=24 Score=34.34 Aligned_cols=43 Identities=19% Similarity=0.101 Sum_probs=30.6
Q ss_pred CCCeEEEecCCcchhHHHHhh-cCCEEEEEeCCHHHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ-KGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~-~g~~V~avDlnp~Aie~a~~Na 137 (380)
+|+++||+|||.-...+..|. ....|+..|..+...+.+++=+
T Consensus 56 ~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl 99 (256)
T PF01234_consen 56 KGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWL 99 (256)
T ss_dssp -EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHH
T ss_pred CCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHH
Confidence 577999999998766554443 3448999999999999887654
No 361
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=39.32 E-value=1.1e+02 Score=27.77 Aligned_cols=57 Identities=14% Similarity=0.132 Sum_probs=37.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++++|+-.|++ |.++..++ +.|++|++++.+++..+.+...+...+ ++.++.+|+.+
T Consensus 4 ~~~~vlItGa~-g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~ 64 (238)
T PRK05786 4 KGKKVAIIGVS-EGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKYG---NIHYVVGDVSS 64 (238)
T ss_pred CCcEEEEECCC-chHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC---CeEEEECCCCC
Confidence 35678777764 55665555 457899999999987766544443322 36778888653
No 362
>PRK07454 short chain dehydrogenase; Provisional
Probab=38.96 E-value=1.6e+02 Score=26.89 Aligned_cols=58 Identities=12% Similarity=0.030 Sum_probs=39.3
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++|-.| |+|.++..++ +.|.+|++++.+++..+.+...++. ...++.++.+|+.+
T Consensus 5 ~~k~vlItG-~sg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~--~~~~~~~~~~D~~~ 66 (241)
T PRK07454 5 SMPRALITG-ASSGIGKATALAFAKAGWDLALVARSQDALEALAAELRS--TGVKAAAYSIDLSN 66 (241)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHh--CCCcEEEEEccCCC
Confidence 345666666 5677766655 4578999999999877666555443 23357888888743
No 363
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=38.84 E-value=49 Score=32.10 Aligned_cols=42 Identities=12% Similarity=-0.092 Sum_probs=29.5
Q ss_pred CCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 94 RPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 94 ~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
.++++||-+||| +|.+++.+|+. |+ .|+++|.+++-++.+..
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~ 187 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATG 187 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhh
Confidence 457778877654 66677766654 66 47788999887776654
No 364
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=38.79 E-value=83 Score=28.96 Aligned_cols=56 Identities=20% Similarity=0.147 Sum_probs=37.7
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.++|-.| |+|.++..++ ..|.+|+.++.+++..+.+.+-+... ..++.++.+|+.
T Consensus 7 ~~~vlItG-asg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~ 66 (262)
T PRK13394 7 GKTAVVTG-AASGIGKEIALELARAGAAVAIADLNQDGANAVADEINKA--GGKAIGVAMDVT 66 (262)
T ss_pred CCEEEEEC-CCChHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHHHHhc--CceEEEEECCCC
Confidence 56677444 5566665544 45889999999998777666655433 334778888864
No 365
>PRK10904 DNA adenine methylase; Provisional
Probab=38.73 E-value=26 Score=34.02 Aligned_cols=45 Identities=20% Similarity=0.324 Sum_probs=33.4
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~ 134 (380)
+++..+....+.++.|||.|++.+... ...++.+|+|++.+..-+
T Consensus 20 ~i~~~~P~~~~yvEPF~GggaV~l~~~--~~~~ilND~n~~Lin~y~ 64 (271)
T PRK10904 20 DIKRHLPKGECLIEPFVGAGSVFLNTD--FSRYILADINSDLISLYN 64 (271)
T ss_pred HHHHhCCCCCcEEeccCCcceeeEecC--CCeEEEEeCCHHHHHHHH
Confidence 344455555789999999999988642 246788999999887543
No 366
>PRK09186 flagellin modification protein A; Provisional
Probab=38.62 E-value=1.1e+02 Score=28.10 Aligned_cols=59 Identities=20% Similarity=0.178 Sum_probs=38.3
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+++||-.|+ +|.++..++ ..|.+|+.++.+++..+.+...+....-...+.++.+|+.
T Consensus 3 ~~k~vlItGa-s~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~ 65 (256)
T PRK09186 3 KGKTILITGA-GGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDIT 65 (256)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCC
Confidence 3567776665 455666555 4578999999999888777666543311233566677864
No 367
>PRK07890 short chain dehydrogenase; Provisional
Probab=38.58 E-value=1.3e+02 Score=27.54 Aligned_cols=57 Identities=11% Similarity=-0.044 Sum_probs=38.6
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.+||-.| |+|.++..++ .+|++|+.++.++...+.+...+...+ .++.++..|+.
T Consensus 4 ~~k~vlItG-a~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 64 (258)
T PRK07890 4 KGKVVVVSG-VGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDIT 64 (258)
T ss_pred CCCEEEEEC-CCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCC
Confidence 456677555 5667777655 458899999999987766655554333 34778888874
No 368
>PRK06720 hypothetical protein; Provisional
Probab=38.46 E-value=1.6e+02 Score=26.30 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=36.7
Q ss_pred CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++.+++-.|++.|. ++..++..|.+|+.+|.++...+.+...+...+ ..+.++..|+.
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~l~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~ 75 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVIVTDIDQESGQATVEEITNLG--GEALFVSYDME 75 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCC
Confidence 46677777765432 233444668899999999887766555554222 23567778863
No 369
>PRK06949 short chain dehydrogenase; Provisional
Probab=38.20 E-value=1.5e+02 Score=27.26 Aligned_cols=57 Identities=12% Similarity=0.098 Sum_probs=38.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+++||-.| |+|.++..++ +.|++|++++.+++.++.+...+...+ .++.++.+|+.
T Consensus 8 ~~k~ilItG-asg~IG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~ 68 (258)
T PRK06949 8 EGKVALVTG-ASSGLGARFAQVLAQAGAKVVLASRRVERLKELRAEIEAEG--GAAHVVSLDVT 68 (258)
T ss_pred CCCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCC
Confidence 466777766 5666666655 347799999999988877766554332 34677877763
No 370
>PRK09072 short chain dehydrogenase; Provisional
Probab=37.54 E-value=1.2e+02 Score=28.14 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=36.7
Q ss_pred CCeEEEecCCcchhHHHH----hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPA----AQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~a----A~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++|=.|+ +|.+|..+ +.+|.+|++++.+++..+.+..-+. ...++.++..|+.+
T Consensus 5 ~~~vlItG~-s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~d 64 (263)
T PRK09072 5 DKRVLLTGA-SGGIGQALAEALAAAGARLLLVGRNAEKLEALAARLP---YPGRHRWVVADLTS 64 (263)
T ss_pred CCEEEEECC-CchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHh---cCCceEEEEccCCC
Confidence 456666654 45555544 4568899999999988776654442 23357788888744
No 371
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=37.53 E-value=1.4e+02 Score=28.97 Aligned_cols=67 Identities=12% Similarity=0.067 Sum_probs=52.7
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC-EEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC-IVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~-~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+|.+||++|-|.|...-.+-.+.- +=+-+|-+|+.++.++++.-.-+ ++|.++.+-..+.+..+.
T Consensus 99 ~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L~ 166 (271)
T KOG1709|consen 99 STKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTLP 166 (271)
T ss_pred hhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhcccc
Confidence 37899999999999998877655533 66778999999999988754322 358888898888887775
No 372
>PRK07814 short chain dehydrogenase; Provisional
Probab=37.33 E-value=1.5e+02 Score=27.67 Aligned_cols=58 Identities=7% Similarity=-0.015 Sum_probs=39.5
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++.++|=.| |+|.++..++ ..|++|+.++.+++..+.+...+... ..++.++..|+.+
T Consensus 9 ~~~~vlItG-asggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~ 70 (263)
T PRK07814 9 DDQVAVVTG-AGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAA--GRRAHVVAADLAH 70 (263)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCC
Confidence 466777776 4666666655 45889999999998877666555432 2347788888643
No 373
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=37.29 E-value=1.2e+02 Score=27.49 Aligned_cols=57 Identities=21% Similarity=0.173 Sum_probs=38.2
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++.++|-.| |+|.++..++ +.|.+|+.++.++...+.+...+...+ .++.++..|+.
T Consensus 4 ~~~~~lItG-~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 64 (253)
T PRK08217 4 KDKVIVITG-GAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGALG--TEVRGYAANVT 64 (253)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCC
Confidence 366777665 4566666655 357899999999877766665554332 34777888863
No 374
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=37.02 E-value=79 Score=30.59 Aligned_cols=41 Identities=17% Similarity=-0.006 Sum_probs=29.9
Q ss_pred eEEEecCC--cchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 98 TICDMFAG--IGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 98 ~VLDlfcG--vG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
+|.=+|+| -+.++..++..|..|+.+|.+++.++.+++.+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~ 47 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIE 47 (291)
T ss_pred EEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHH
Confidence 56667666 234555666778899999999999987766544
No 375
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=36.98 E-value=64 Score=34.61 Aligned_cols=41 Identities=34% Similarity=0.348 Sum_probs=30.6
Q ss_pred CCCeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHH
Q 046527 95 PGETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 95 ~g~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~ 135 (380)
++.+|+-+|+| +|..++.+++ .|+.|+++|.++...+.++.
T Consensus 163 p~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~ 205 (511)
T TIGR00561 163 PPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQS 205 (511)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHH
Confidence 45799999887 4455555554 47899999999998777664
No 376
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=36.97 E-value=71 Score=32.57 Aligned_cols=52 Identities=19% Similarity=0.353 Sum_probs=41.2
Q ss_pred EEecCCcchhHHHHhhc----CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccH
Q 046527 100 CDMFAGIGPFAIPAAQK----GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDA 153 (380)
Q Consensus 100 LDlfcGvG~fsl~aA~~----g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da 153 (380)
+|+ |+|+-.++.+-. +..-.+.|++..++..|..|+..|+++.++.+++...
T Consensus 107 iDI--gtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~ 162 (419)
T KOG2912|consen 107 IDI--GTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEP 162 (419)
T ss_pred eec--cCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecc
Confidence 677 455555555432 3478999999999999999999999999888887755
No 377
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=36.80 E-value=1.6e+02 Score=26.69 Aligned_cols=56 Identities=11% Similarity=-0.047 Sum_probs=38.8
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+++-.| |+|.++..++ ..|++|+.++.++...+.....+... ..++.++..|+.
T Consensus 7 ~~~vlVtG-~sg~iG~~l~~~L~~~G~~Vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~ 66 (239)
T PRK07666 7 GKNALITG-AGRGIGRAVAIALAKEGVNVGLLARTEENLKAVAEEVEAY--GVKVVIATADVS 66 (239)
T ss_pred CCEEEEEc-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCeEEEEECCCC
Confidence 45677666 5677777655 45789999999988776665555433 335788888864
No 378
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.66 E-value=1.6e+02 Score=27.03 Aligned_cols=58 Identities=14% Similarity=0.116 Sum_probs=40.0
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++.++|-.| |+|.++..++ +.|++|+.++.+++.++.+...++..+ .++.++.+|+.+
T Consensus 10 ~~k~ilItG-as~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 71 (256)
T PRK06124 10 AGQVALVTG-SARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIAD 71 (256)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCC
Confidence 467777766 4566666554 458899999999988777666665443 347788888643
No 379
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=36.22 E-value=91 Score=31.53 Aligned_cols=47 Identities=17% Similarity=0.169 Sum_probs=36.3
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
++..|.+|+-+|+|-...-..+++.-++|.+||+||.-+..-+-.++
T Consensus 60 ~~g~ghrivtigSGGcn~L~ylsr~Pa~id~VDlN~ahiAln~lkla 106 (414)
T COG5379 60 QLGIGHRIVTIGSGGCNMLAYLSRAPARIDVVDLNPAHIALNRLKLA 106 (414)
T ss_pred hcCCCcEEEEecCCcchHHHHhhcCCceeEEEeCCHHHHHHHHHHHH
Confidence 35778899999888776666677777899999999988776554443
No 380
>PRK07576 short chain dehydrogenase; Provisional
Probab=35.94 E-value=1.5e+02 Score=27.85 Aligned_cols=57 Identities=14% Similarity=0.112 Sum_probs=36.7
Q ss_pred CCCeEEEecCCcchhHHHH----hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPA----AQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~a----A~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+++++|-.| |+|.++..+ +..|++|++++.+++..+.....+... ..++.++..|+.
T Consensus 8 ~~k~ilItG-asggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dv~ 68 (264)
T PRK07576 8 AGKNVVVVG-GTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQA--GPEGLGVSADVR 68 (264)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHh--CCceEEEECCCC
Confidence 466777776 455555544 456889999999988766554444332 224667788874
No 381
>PRK06138 short chain dehydrogenase; Provisional
Probab=35.91 E-value=1.2e+02 Score=27.64 Aligned_cols=56 Identities=14% Similarity=0.064 Sum_probs=37.8
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+.++|=.|| +|.++..++ +.|++|+.++.+++..+.....+. ...++.++.+|+.+
T Consensus 5 ~k~~lItG~-sg~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~---~~~~~~~~~~D~~~ 64 (252)
T PRK06138 5 GRVAIVTGA-GSGIGRATAKLFAREGARVVVADRDAEAAERVAAAIA---AGGRAFARQGDVGS 64 (252)
T ss_pred CcEEEEeCC-CchHHHHHHHHHHHCCCeEEEecCCHHHHHHHHHHHh---cCCeEEEEEcCCCC
Confidence 556666664 566666554 458899999999887776665554 23357888888743
No 382
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=35.84 E-value=24 Score=36.50 Aligned_cols=21 Identities=19% Similarity=0.044 Sum_probs=17.6
Q ss_pred CCeEEEecCCcchhHHHHhhc
Q 046527 96 GETICDMFAGIGPFAIPAAQK 116 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~ 116 (380)
.-.|+|+|||+|+.++.+...
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~ 84 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDV 84 (386)
T ss_pred ceeEEEecCCCCccHHHHHHH
Confidence 448999999999999987653
No 383
>PRK06181 short chain dehydrogenase; Provisional
Probab=35.09 E-value=1.3e+02 Score=27.90 Aligned_cols=56 Identities=9% Similarity=-0.024 Sum_probs=37.7
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+||-.| |+|.++..++ ..|++|++++.++...+.+...+...+ .++.++.+|+.+
T Consensus 2 ~~vlVtG-asg~iG~~la~~l~~~g~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~ 61 (263)
T PRK06181 2 KVVIITG-ASEGIGRALAVRLARAGAQLVLAARNETRLASLAQELADHG--GEALVVPTDVSD 61 (263)
T ss_pred CEEEEec-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCC
Confidence 3455444 5666776654 457899999999888776666554433 357788888744
No 384
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=35.08 E-value=72 Score=31.17 Aligned_cols=44 Identities=34% Similarity=0.363 Sum_probs=30.2
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCCE-EEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGCI-VFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~~-V~avDlnp~Aie~a~ 134 (380)
..+.+|++||-.++| +|.+++.+|+ .|++ |++++.+++-.+.++
T Consensus 156 ~~~~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~ 202 (347)
T PRK10309 156 AQGCEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAK 202 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHH
Confidence 345678888888653 4444445554 3664 899999999888764
No 385
>PRK07831 short chain dehydrogenase; Provisional
Probab=35.03 E-value=1.4e+02 Score=27.63 Aligned_cols=62 Identities=19% Similarity=0.115 Sum_probs=39.0
Q ss_pred CCCCeEEEecCC---cchh-HHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 94 RPGETICDMFAG---IGPF-AIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 94 ~~g~~VLDlfcG---vG~f-sl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..++++|-.|+. +|.- +..++..|++|+..|.+++.++.+.+.++..--..++.++..|+.+
T Consensus 15 ~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 80 (262)
T PRK07831 15 LAGKVVLVTAAAGTGIGSATARRALEEGARVVISDIHERRLGETADELAAELGLGRVEAVVCDVTS 80 (262)
T ss_pred cCCCEEEEECCCcccHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhcCCceEEEEEccCCC
Confidence 346777777742 3332 2234456889999999998887776655442111247788888743
No 386
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=35.03 E-value=73 Score=35.41 Aligned_cols=42 Identities=29% Similarity=0.342 Sum_probs=34.5
Q ss_pred CeEEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 97 ETICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 97 ~~VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
.+|.-+|+|+ ..++..+|..|..|+.+|.++++++.+...+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~ 357 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAA 357 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHH
Confidence 4788999997 55666777889999999999999988776654
No 387
>PRK07478 short chain dehydrogenase; Provisional
Probab=34.83 E-value=1.6e+02 Score=27.02 Aligned_cols=56 Identities=16% Similarity=0.096 Sum_probs=37.9
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++++|=.| |+|.++..++ +.|++|+.++.+++..+.+...++..+ .++.++..|+.
T Consensus 6 ~k~~lItG-as~giG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 65 (254)
T PRK07478 6 GKVAIITG-ASSGIGRAAAKLFAREGAKVVVGARRQAELDQLVAEIRAEG--GEAVALAGDVR 65 (254)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEcCCC
Confidence 55666554 4556555554 458899999999988887766665443 24677888864
No 388
>PF05575 V_cholerae_RfbT: Vibrio cholerae RfbT protein; InterPro: IPR008890 This family consists of several RfbT proteins from Vibrio cholerae. It has been found that genetic alteration of the rfbT gene is responsible for serotype conversion of V. cholerae O1 [] and determines the difference between the Ogawa and Inaba serotypes, in that the presence of rfbT is sufficient for Inaba-to-Ogawa serotype conversion [].
Probab=34.72 E-value=23 Score=32.87 Aligned_cols=65 Identities=18% Similarity=0.237 Sum_probs=48.0
Q ss_pred eecChHHHHHHHH-HhccCCCCeEEEecCCcchhHHHHhhcC--CEEEEEeCCHHHHHHHHHHHHHcC
Q 046527 77 YWNSRLEHEHLRI-ISQFRPGETICDMFAGIGPFAIPAAQKG--CIVFANDLNPDSVHYLKINAKVNK 141 (380)
Q Consensus 77 f~n~rl~tE~~r~-i~~i~~g~~VLDlfcGvG~fsl~aA~~g--~~V~avDlnp~Aie~a~~Na~lN~ 141 (380)
|-++....-.+.+ +...+.+.+.+|+|+.+|.|--.+|+.- .+++++|.-.++-...+.|+.+|+
T Consensus 60 yknpnfdlgmrhwivnhckhdttyidiganvgtfcgiaarhitqgkiiaiepltemensirmnvqlnn 127 (286)
T PF05575_consen 60 YKNPNFDLGMRHWIVNHCKHDTTYIDIGANVGTFCGIAARHITQGKIIAIEPLTEMENSIRMNVQLNN 127 (286)
T ss_pred cCCCCCccchhHhhhhhccCCceEEEeccccccchhhhhhhcccCceEEEechhhhhhheeeeeeeCC
Confidence 3344433334433 4556677899999999999977677652 489999999998888888988876
No 389
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=34.70 E-value=1.5e+02 Score=26.85 Aligned_cols=58 Identities=17% Similarity=0.105 Sum_probs=38.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+||-.| |+|.++..++ +.|.+|++++.++.....+...+...+ ..+.++.+|..+
T Consensus 5 ~~~~ilItG-asg~iG~~l~~~l~~~g~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~ 66 (251)
T PRK12826 5 EGRVALVTG-AARGIGRAIAVRLAADGAEVIVVDICGDDAAATAELVEAAG--GKARARQVDVRD 66 (251)
T ss_pred CCCEEEEcC-CCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEECCCCC
Confidence 356777555 5677777655 457899999999877766665554433 237788888743
No 390
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=34.56 E-value=85 Score=30.05 Aligned_cols=60 Identities=15% Similarity=0.181 Sum_probs=35.2
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+||-.| |+|.+|..+++ .|.+|++++.++.............+..++++++.+|+.+
T Consensus 3 ~~~~ilVtG-atGfIG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 66 (322)
T PLN02662 3 EGKVVCVTG-ASGYIASWLVKLLLQRGYTVKATVRDPNDPKKTEHLLALDGAKERLHLFKANLLE 66 (322)
T ss_pred CCCEEEEEC-ChHHHHHHHHHHHHHCCCEEEEEEcCCCchhhHHHHHhccCCCCceEEEeccccC
Confidence 356676655 57877777664 4778988877654332222221122223358889898764
No 391
>COG0677 WecC UDP-N-acetyl-D-mannosaminuronate dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=34.42 E-value=33 Score=35.79 Aligned_cols=50 Identities=24% Similarity=0.355 Sum_probs=33.1
Q ss_pred CcchhHHHH----hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527 105 GIGPFAIPA----AQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT 162 (380)
Q Consensus 105 GvG~fsl~a----A~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~ 162 (380)
|-|..|+++ |++|..|+|+|+|+..++.+. .- ...+..-+..+.++....
T Consensus 16 GLGYVGLPlA~~fA~~G~~ViG~DIn~~~Vd~ln------~G--~~~i~e~~~~~~v~~~v~ 69 (436)
T COG0677 16 GLGYVGLPLAAAFASAGFKVIGVDINQKKVDKLN------RG--ESYIEEPDLDEVVKEAVE 69 (436)
T ss_pred ccccccHHHHHHHHHcCCceEeEeCCHHHHHHHh------CC--cceeecCcHHHHHHHHHh
Confidence 555555554 456789999999999998643 22 245556666666666554
No 392
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=34.36 E-value=72 Score=32.40 Aligned_cols=45 Identities=20% Similarity=0.277 Sum_probs=35.0
Q ss_pred ccCCCCeEEEec--CCcchhHHHHhhc---CC-EEEEEeCCHHHHHHHHHH
Q 046527 92 QFRPGETICDMF--AGIGPFAIPAAQK---GC-IVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 92 ~i~~g~~VLDlf--cGvG~fsl~aA~~---g~-~V~avDlnp~Aie~a~~N 136 (380)
.+.+|++|+-++ .++|.+++.+|+. |+ +|+++|.+++-++.+++.
T Consensus 172 ~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~~~~~r~~~a~~~ 222 (410)
T cd08238 172 GIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTDVNDERLARAQRL 222 (410)
T ss_pred CCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEcCCHHHHHHHHHh
Confidence 467788888776 3478888877775 33 799999999999988774
No 393
>PLN02253 xanthoxin dehydrogenase
Probab=34.16 E-value=1.3e+02 Score=28.13 Aligned_cols=57 Identities=16% Similarity=0.052 Sum_probs=37.4
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.++++|-.| |+|.++..++ +.|++|+.++.+++..+.+...+. ...++.++.+|+.+
T Consensus 17 ~~k~~lItG-as~gIG~~la~~l~~~G~~v~~~~~~~~~~~~~~~~~~---~~~~~~~~~~Dl~d 77 (280)
T PLN02253 17 LGKVALVTG-GATGIGESIVRLFHKHGAKVCIVDLQDDLGQNVCDSLG---GEPNVCFFHCDVTV 77 (280)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHhc---CCCceEEEEeecCC
Confidence 356777666 5566666555 468899999998877665544332 12357888888744
No 394
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=34.03 E-value=31 Score=32.74 Aligned_cols=47 Identities=17% Similarity=0.048 Sum_probs=39.1
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l 139 (380)
...++.||-+|++ +|.+...+..+.++|+.+|++|.+-..+.-|++.
T Consensus 42 ~~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~lp~~v~F 89 (254)
T COG4017 42 GEEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFLPNNVKF 89 (254)
T ss_pred ccCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcCCCCccH
Confidence 3467889999888 7888888888888999999999998888777653
No 395
>PRK06125 short chain dehydrogenase; Provisional
Probab=33.76 E-value=1.8e+02 Score=26.82 Aligned_cols=58 Identities=17% Similarity=0.192 Sum_probs=38.5
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++++|=.|+ +|.++..++ ..|++|++++.+++..+.+...+.... ..++.++..|+.
T Consensus 6 ~~k~vlItG~-~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~ 67 (259)
T PRK06125 6 AGKRVLITGA-SKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLS 67 (259)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCC
Confidence 3567777764 455665544 558899999999987776666554332 224677888864
No 396
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=33.72 E-value=51 Score=33.57 Aligned_cols=55 Identities=15% Similarity=-0.051 Sum_probs=44.2
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
-...+|+|+|+|..+-.+......|-+++.+...+-.+..+.. -| |+.+-+|...
T Consensus 178 v~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq 232 (342)
T KOG3178|consen 178 VNVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQ 232 (342)
T ss_pred CceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccc
Confidence 4789999999999999988876689999999999998888875 44 4445555543
No 397
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=33.39 E-value=95 Score=29.78 Aligned_cols=44 Identities=27% Similarity=0.406 Sum_probs=33.3
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~ 134 (380)
..+.+++.||-.++| +|..++.+|+. |.+|++++.+++..+.++
T Consensus 158 ~~~~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~ 203 (330)
T cd08245 158 AGPRPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELAR 203 (330)
T ss_pred hCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHH
Confidence 346778888888776 66666666654 779999999998887764
No 398
>PRK05875 short chain dehydrogenase; Provisional
Probab=33.39 E-value=1.6e+02 Score=27.53 Aligned_cols=60 Identities=18% Similarity=0.049 Sum_probs=37.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++++|-.|+ +|.++..++ ..|.+|++++.+++..+.....+...+...++.++.+|+.+
T Consensus 6 ~~k~vlItGa-sg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~ 69 (276)
T PRK05875 6 QDRTYLVTGG-GSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTD 69 (276)
T ss_pred CCCEEEEECC-CcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCC
Confidence 3567776664 455666555 45789999999987766555544322212347788888743
No 399
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=32.98 E-value=89 Score=30.16 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=36.0
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+++||-.| |+|.+|..+++ .|.+|+++..++...+....-....+...+++++.+|+.+.
T Consensus 4 ~~k~vlVtG-~~G~IG~~l~~~L~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~ 68 (325)
T PLN02989 4 GGKVVCVTG-ASGYIASWIVKLLLFRGYTINATVRDPKDRKKTDHLLALDGAKERLKLFKADLLDE 68 (325)
T ss_pred CCCEEEEEC-CchHHHHHHHHHHHHCCCEEEEEEcCCcchhhHHHHHhccCCCCceEEEeCCCCCc
Confidence 356777665 67777776664 47788887766654433222111223334578888887543
No 400
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=32.93 E-value=28 Score=36.90 Aligned_cols=66 Identities=12% Similarity=0.079 Sum_probs=49.9
Q ss_pred CCeEEEecCCcchhHHHHhhc-C-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHhc
Q 046527 96 GETICDMFAGIGPFAIPAAQK-G-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLMT 162 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~-g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~~ 162 (380)
+..+|-+|-|.|.+...+-.. . ..+++||++|.+++.+..+...-.-. +..+.-.|+.+++.+..+
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k 363 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAK 363 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhh
Confidence 446777777778887766543 2 58999999999999999997654322 456777899999988764
No 401
>KOG2360 consensus Proliferation-associated nucleolar protein (NOL1) [Cell cycle control, cell division, chromosome partitioning]
Probab=32.32 E-value=49 Score=34.31 Aligned_cols=63 Identities=21% Similarity=0.173 Sum_probs=52.8
Q ss_pred ccCCCCeEEEecCCcchhHHHHhhc---CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 92 QFRPGETICDMFAGIGPFAIPAAQK---GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 92 ~i~~g~~VLDlfcGvG~fsl~aA~~---g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
...+|..|+|.+|--|.=+.++|.. -.+++|.|.+++-++.++.-+...|.+. ++...+|...
T Consensus 210 ~p~~g~~v~d~caapg~KTsH~a~i~~n~gki~afe~d~~r~~tl~~~l~~ag~~~-~~~~~~df~~ 275 (413)
T KOG2360|consen 210 DPRPGSRVIDTCAAPGNKTSHLAAIMRNQGKIYAFERDAKRAATLRKLLKIAGVSI-VESVEGDFLN 275 (413)
T ss_pred CCCCCCceeeeccccccchhhHHHHhhccCCcchhhhhhHHHHHHHHHHHHcCCCc-cccccccccC
Confidence 3456789999999999999988864 2389999999999999999999999886 6667777654
No 402
>COG2961 ComJ Protein involved in catabolism of external DNA [General function prediction only]
Probab=32.05 E-value=1.1e+02 Score=30.01 Aligned_cols=70 Identities=19% Similarity=0.233 Sum_probs=57.3
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+..+.+|.. +..|+|+=-++-.+.+..-+..+.|+-|+-+..++.|.. -+.++++.++|....+....
T Consensus 82 ~~i~~lN~~~~-l~~YpGSP~lA~~llR~qDRl~l~ELHp~D~~~L~~~f~---~d~~vrv~~~DG~~~l~a~L 151 (279)
T COG2961 82 DAVRQLNPGGG-LRYYPGSPLLARQLLREQDRLVLTELHPSDAPLLRNNFA---GDRRVRVLRGDGFLALKAHL 151 (279)
T ss_pred HHHHHhCCCCC-cccCCCCHHHHHHHcchhceeeeeecCccHHHHHHHHhC---CCcceEEEecCcHHHHhhhC
Confidence 34456666665 899999998888888877799999999999999999986 34469999999998876653
No 403
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=31.96 E-value=1.2e+02 Score=30.08 Aligned_cols=67 Identities=28% Similarity=0.350 Sum_probs=43.7
Q ss_pred hccCCCCeEEEec--CCcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHHHHHHh
Q 046527 91 SQFRPGETICDMF--AGIGPFAIPAAQK-GCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREFIRQLM 161 (380)
Q Consensus 91 ~~i~~g~~VLDlf--cGvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~l~~l~ 161 (380)
..+++|++||-.+ .|+|.+++.+|+. |+.++++-.+++-.+++++ .|-+.-+.+...|..+-++++.
T Consensus 138 ~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~----lGAd~vi~y~~~~~~~~v~~~t 207 (326)
T COG0604 138 AGLKPGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKE----LGADHVINYREEDFVEQVRELT 207 (326)
T ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHh----cCCCEEEcCCcccHHHHHHHHc
Confidence 4577899998887 4799999999987 5577777777766664443 2333223344555555555543
No 404
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=31.85 E-value=2.1e+02 Score=26.32 Aligned_cols=58 Identities=12% Similarity=0.135 Sum_probs=36.0
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++||-.| |+|.++..++ ..|++|+.++.++...+.+...+..-.-..++.++.+|+.+
T Consensus 3 k~ilItG-~~~~IG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 64 (259)
T PRK12384 3 QVAVVIG-GGQTLGAFLCHGLAEEGYRVAVADINSEKAANVAQEINAEYGEGMAYGFGADATS 64 (259)
T ss_pred CEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHhcCCceeEEEEccCCC
Confidence 4566666 4566655544 56889999999988776655444321111247788888643
No 405
>PRK05876 short chain dehydrogenase; Provisional
Probab=31.81 E-value=1.7e+02 Score=27.78 Aligned_cols=57 Identities=14% Similarity=0.167 Sum_probs=37.7
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++++|-.|+ +|.++..++ ..|++|+.++.++..++.+...+...+ .++.++..|+.
T Consensus 5 ~~k~vlVTGa-s~gIG~ala~~La~~G~~Vv~~~r~~~~l~~~~~~l~~~~--~~~~~~~~Dv~ 65 (275)
T PRK05876 5 PGRGAVITGG-ASGIGLATGTEFARRGARVVLGDVDKPGLRQAVNHLRAEG--FDVHGVMCDVR 65 (275)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEeCCCC
Confidence 4567776654 455565544 558899999999887776655554333 24777888874
No 406
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.56 E-value=1.1e+02 Score=29.64 Aligned_cols=40 Identities=20% Similarity=0.155 Sum_probs=29.2
Q ss_pred eEEEecCCcc--hhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 98 TICDMFAGIG--PFAIPAAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 98 ~VLDlfcGvG--~fsl~aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
+|.-+|+|.= .++..++..|..|+.+|.+++.++.++.++
T Consensus 5 kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~ 46 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERI 46 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 5667777743 333445566789999999999998887764
No 407
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=31.32 E-value=1.1e+02 Score=30.67 Aligned_cols=41 Identities=24% Similarity=0.285 Sum_probs=30.7
Q ss_pred CeEEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 97 ETICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 97 ~~VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
.+|.-+|+|+ ..++..++..|..|+.+|.++++.+.++..+
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i 50 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANV 50 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHH
Confidence 4677787773 3445556777899999999999988766644
No 408
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=31.16 E-value=89 Score=31.48 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHH
Q 046527 94 RPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDS 129 (380)
Q Consensus 94 ~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~A 129 (380)
.+|++|+-.|+| +|.+++.+|+. |++|++++.+++.
T Consensus 177 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~ 214 (375)
T PLN02178 177 ESGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEK 214 (375)
T ss_pred CCCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHH
Confidence 478888877653 45555555554 7789999987654
No 409
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=30.73 E-value=1e+02 Score=29.54 Aligned_cols=38 Identities=24% Similarity=0.060 Sum_probs=27.8
Q ss_pred eEEEecCC--cchhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 98 TICDMFAG--IGPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 98 ~VLDlfcG--vG~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
+|.-+|+| -+.++..++..|..|+.+|.+++.++.++.
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~ 44 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLA 44 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHH
Confidence 46666666 345555666778899999999999976553
No 410
>PRK05866 short chain dehydrogenase; Provisional
Probab=30.44 E-value=1.9e+02 Score=27.81 Aligned_cols=56 Identities=20% Similarity=0.065 Sum_probs=37.7
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+||-.|+ +|.+|..++ +.|++|+.++.+++..+.+.+.+...+ ..+.++.+|+.
T Consensus 40 ~k~vlItGa-sggIG~~la~~La~~G~~Vi~~~R~~~~l~~~~~~l~~~~--~~~~~~~~Dl~ 99 (293)
T PRK05866 40 GKRILLTGA-SSGIGEAAAEQFARRGATVVAVARREDLLDAVADRITRAG--GDAMAVPCDLS 99 (293)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEccCC
Confidence 466776664 455565544 557899999999988777666554322 24677888864
No 411
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=30.10 E-value=1.1e+02 Score=29.44 Aligned_cols=45 Identities=31% Similarity=0.515 Sum_probs=32.2
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||..++| +|.+++.+|+. |. .|++++.++...+.+++
T Consensus 163 ~~~~~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~ 210 (347)
T cd05278 163 AGIKPGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKE 210 (347)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHH
Confidence 346678899887664 46666666664 64 89999988877776654
No 412
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=29.97 E-value=1.4e+02 Score=32.63 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=41.3
Q ss_pred cCCCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCC-------CCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKV-------DNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l-------~~ri~~~~~Da~e 155 (380)
.+.|++||-.| |+|.+|..++ +.|.+|++++.+++..+.+...+...++ ..++.++.+|+.+
T Consensus 77 ~~~gKvVLVTG-ATGgIG~aLAr~LLk~G~~Vval~Rn~ekl~~l~~~l~~~~L~~~Ga~~~~~v~iV~gDLtD 149 (576)
T PLN03209 77 TKDEDLAFVAG-ATGKVGSRTVRELLKLGFRVRAGVRSAQRAESLVQSVKQMKLDVEGTQPVEKLEIVECDLEK 149 (576)
T ss_pred cCCCCEEEEEC-CCCHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhhhhccccccccccCceEEEEecCCC
Confidence 34666666555 5676776654 4578999999999887766655543222 1347888899865
No 413
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=29.67 E-value=1.1e+02 Score=34.11 Aligned_cols=43 Identities=21% Similarity=0.231 Sum_probs=34.0
Q ss_pred CeEEEecCCc--chhHHHHh-hcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527 97 ETICDMFAGI--GPFAIPAA-QKGCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 97 ~~VLDlfcGv--G~fsl~aA-~~g~~V~avDlnp~Aie~a~~Na~l 139 (380)
.+|.-+|+|+ ..++..+| ..|..|+.+|.++++++.+...+..
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~ 355 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWD 355 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHH
Confidence 4688999987 55566666 6688999999999999988776543
No 414
>PRK12829 short chain dehydrogenase; Provisional
Probab=29.50 E-value=1.8e+02 Score=26.65 Aligned_cols=56 Identities=14% Similarity=0.033 Sum_probs=37.3
Q ss_pred CCCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 94 RPGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++.++|-.|+ +|.++..+++ .|.+|++++.++...+.+..... +. ++.++.+|+.
T Consensus 9 ~~~~~vlItGa-~g~iG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~--~~--~~~~~~~D~~ 68 (264)
T PRK12829 9 LDGLRVLVTGG-ASGIGRAIAEAFAEAGARVHVCDVSEAALAATAARLP--GA--KVTATVADVA 68 (264)
T ss_pred cCCCEEEEeCC-CCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHh--cC--ceEEEEccCC
Confidence 46678887765 4777776554 47899999999877665543322 22 3677777764
No 415
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=29.41 E-value=2.4e+02 Score=25.56 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=38.8
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.++|-.| |+|.++..++ +.|.+|+.++.+++..+.+...+...+ .++.++.+|+.
T Consensus 3 ~~~ilItG-as~~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~d~~ 62 (250)
T TIGR03206 3 DKTAIVTG-GGGGIGGATCRRFAEEGAKVAVFDLNREAAEKVAADIRAKG--GNAQAFACDIT 62 (250)
T ss_pred CCEEEEeC-CCChHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHHHhcC--CcEEEEEcCCC
Confidence 45666665 4566666655 457799999999988877766665432 34778888864
No 416
>PRK08267 short chain dehydrogenase; Provisional
Probab=29.33 E-value=1.3e+02 Score=27.78 Aligned_cols=53 Identities=17% Similarity=0.091 Sum_probs=35.7
Q ss_pred eEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 98 TICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++|-.| |+|.+|..++ +.|.+|+.++.+++.++.+...+. ..++.++.+|+.+
T Consensus 3 ~vlItG-asg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~ 59 (260)
T PRK08267 3 SIFITG-AASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTD 59 (260)
T ss_pred EEEEeC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCC
Confidence 455555 4456555554 458899999999988777665543 2347888888754
No 417
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=29.14 E-value=98 Score=30.79 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=26.0
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSV 130 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Ai 130 (380)
+.+|++||-.|+| +|.+++.+|+. |++|++++.+++-.
T Consensus 181 ~~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~ 220 (360)
T PLN02586 181 TEPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKE 220 (360)
T ss_pred cCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchh
Confidence 4678888887664 55555555654 77899888876543
No 418
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=28.86 E-value=71 Score=31.72 Aligned_cols=30 Identities=23% Similarity=0.141 Sum_probs=22.3
Q ss_pred CCCCeEEEecCCcchhHHHHhhcCCEEEEEeCC
Q 046527 94 RPGETICDMFAGIGPFAIPAAQKGCIVFANDLN 126 (380)
Q Consensus 94 ~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDln 126 (380)
....+|.|+|||-+-++. .....|++.|+-
T Consensus 179 ~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~ 208 (325)
T KOG3045|consen 179 PKNIVIADFGCGEAKIAS---SERHKVHSFDLV 208 (325)
T ss_pred cCceEEEecccchhhhhh---ccccceeeeeee
Confidence 455689999999988765 333478888864
No 419
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=28.75 E-value=1.2e+02 Score=29.22 Aligned_cols=40 Identities=15% Similarity=0.115 Sum_probs=27.6
Q ss_pred eEEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 98 TICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 98 ~VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
+|.=+|+|. +.++..++..|..|+.+|.+++.++.+.+.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~ 44 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEI 44 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHH
Confidence 455555552 2344445566889999999999999887653
No 420
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=28.49 E-value=49 Score=31.45 Aligned_cols=43 Identities=16% Similarity=0.047 Sum_probs=33.5
Q ss_pred CeEEEecCCcchhHHHHhhc----------CCEEEEEeCCHHHHHHHHHHHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQK----------GCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~----------g~~V~avDlnp~Aie~a~~Na~l 139 (380)
-.|+++|+|.|.++.-++.. ..+++-||.||...+.-++.+..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 48999999999999887753 13899999999998887777643
No 421
>PRK09291 short chain dehydrogenase; Provisional
Probab=28.40 E-value=2.3e+02 Score=25.85 Aligned_cols=57 Identities=23% Similarity=0.137 Sum_probs=37.4
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.+||-.| |+|.++..++ ..|++|++...++...+.+.......+. .+.++.+|+.+.
T Consensus 3 ~~vlVtG-asg~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~~--~~~~~~~D~~~~ 63 (257)
T PRK09291 3 KTILITG-AGSGFGREVALRLARKGHNVIAGVQIAPQVTALRAEAARRGL--ALRVEKLDLTDA 63 (257)
T ss_pred CEEEEeC-CCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCC--cceEEEeeCCCH
Confidence 3566555 4566666554 4588999999998877666655544433 377888887553
No 422
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=28.40 E-value=1.2e+02 Score=28.35 Aligned_cols=45 Identities=22% Similarity=0.262 Sum_probs=31.4
Q ss_pred hccCCCCeEEEecCCc-chhHHHHhhc-CCE-EEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGI-GPFAIPAAQK-GCI-VFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGv-G~fsl~aA~~-g~~-V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++|. |..++.+|+. |.+ |++++.+++-.+.+++
T Consensus 93 ~~~~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~ 140 (277)
T cd08255 93 AEPRLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEA 140 (277)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHH
Confidence 4567888888876542 4455555554 666 9999999888776554
No 423
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=28.13 E-value=1.8e+02 Score=27.02 Aligned_cols=55 Identities=11% Similarity=-0.005 Sum_probs=35.6
Q ss_pred CCCeEEEecCCcchhHHH----HhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIP----AAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~----aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++++|-.|+ +|.++.. ++..|++|+.++.+++.++.+..-. ..++.++..|+.+
T Consensus 5 ~~k~vlVtGa-s~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~~ 63 (263)
T PRK06200 5 HGQVALITGG-GSGIGRALVERFLAEGARVAVLERSAEKLASLRQRF-----GDHVLVVEGDVTS 63 (263)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCcceEEEccCCC
Confidence 4567777765 4455554 4456889999999988776554322 2346778888643
No 424
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=28.00 E-value=99 Score=31.56 Aligned_cols=52 Identities=17% Similarity=0.163 Sum_probs=36.5
Q ss_pred CCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
...++=+ |.|.+|..+++ .|..|+.+|.+++.++.+++.. .+ +.++.+|+.+
T Consensus 231 ~~~iiIi--G~G~~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~-----~~-~~~i~gd~~~ 286 (453)
T PRK09496 231 VKRVMIV--GGGNIGYYLAKLLEKEGYSVKLIERDPERAEELAEEL-----PN-TLVLHGDGTD 286 (453)
T ss_pred CCEEEEE--CCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC-----CC-CeEEECCCCC
Confidence 3456555 55777777664 3679999999999988776542 22 5678899853
No 425
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=27.62 E-value=2.1e+02 Score=26.31 Aligned_cols=57 Identities=12% Similarity=0.107 Sum_probs=38.1
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++++|-.| |+|.++..++ +.|++|+..+.++...+.+...++..+ .++.++..|+.
T Consensus 8 ~~k~~lItG-as~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~ 68 (254)
T PRK08085 8 AGKNILITG-SAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVT 68 (254)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCC
Confidence 356666666 5566666555 457899999999887777666655433 24667777864
No 426
>PRK06139 short chain dehydrogenase; Provisional
Probab=27.55 E-value=2.4e+02 Score=27.94 Aligned_cols=57 Identities=11% Similarity=0.084 Sum_probs=39.5
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+++||-.|+ +|.++..++ ..|++|+.++.+++.++.+.+.++..+. .+.++..|+.
T Consensus 6 ~~k~vlITGA-s~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g~--~~~~~~~Dv~ 66 (330)
T PRK06139 6 HGAVVVITGA-SSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALGA--EVLVVPTDVT 66 (330)
T ss_pred CCCEEEEcCC-CCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCC--cEEEEEeeCC
Confidence 3566776665 455555544 5688999999999998888777765543 3667777764
No 427
>PRK07024 short chain dehydrogenase; Provisional
Probab=27.46 E-value=1.4e+02 Score=27.57 Aligned_cols=55 Identities=13% Similarity=0.082 Sum_probs=35.4
Q ss_pred CeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 97 ETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+||-.| |+|.+|..++ +.|++|+.++.+++.++.+...+...+ ++.++.+|+.+
T Consensus 3 ~~vlItG-as~gIG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~---~~~~~~~Dl~~ 61 (257)
T PRK07024 3 LKVFITG-ASSGIGQALAREYARQGATLGLVARRTDALQAFAARLPKAA---RVSVYAADVRD 61 (257)
T ss_pred CEEEEEc-CCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhcccCC---eeEEEEcCCCC
Confidence 3555555 4666666555 558899999999887765554432221 47888888743
No 428
>PRK08265 short chain dehydrogenase; Provisional
Probab=27.43 E-value=2.4e+02 Score=26.26 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=34.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++|-.| |+|.++..++ +.|++|+.++.+++..+.+..-+ ..++.++.+|+.+
T Consensus 5 ~~k~vlItG-as~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 63 (261)
T PRK08265 5 AGKVAIVTG-GATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITD 63 (261)
T ss_pred CCCEEEEEC-CCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCC
Confidence 356677666 4455555544 45889999999987655443322 2347788888743
No 429
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=27.40 E-value=91 Score=31.72 Aligned_cols=52 Identities=23% Similarity=0.147 Sum_probs=37.5
Q ss_pred CCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHc--CCCCcEEEE
Q 046527 96 GETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHYLKINAKVN--KVDNYVRAY 149 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN--~l~~ri~~~ 149 (380)
.-.+|-.|||.|.++.-+|..|-.+-|+|.+--++ +.-+..+| ..++.+.++
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Ml--i~S~FiLN~~~~~nq~~IY 204 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFML--ICSSFILNYCKQENQFTIY 204 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHH--HHHHHHHHhhccCCcEEEE
Confidence 35799999999999999999998888887766554 33444555 344544433
No 430
>KOG0725 consensus Reductases with broad range of substrate specificities [General function prediction only]
Probab=27.37 E-value=3.1e+02 Score=26.61 Aligned_cols=60 Identities=15% Similarity=0.041 Sum_probs=46.4
Q ss_pred CCCeEEEecCCcc---hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCC-CcEEEEeccHH
Q 046527 95 PGETICDMFAGIG---PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVD-NYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG---~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~-~ri~~~~~Da~ 154 (380)
.|+++|--|+..| +.+..+++.|++|+..+.+.+.++....-....+.. .++..+.+|+.
T Consensus 7 ~gkvalVTG~s~GIG~aia~~la~~Ga~v~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~ 70 (270)
T KOG0725|consen 7 AGKVALVTGGSSGIGKAIALLLAKAGAKVVITGRSEERLEETAQELGGLGYTGGKVLAIVCDVS 70 (270)
T ss_pred CCcEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeeEEEECcCC
Confidence 4667777766544 566788899999999999999998888777666553 56888889985
No 431
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=27.20 E-value=1.3e+02 Score=28.90 Aligned_cols=44 Identities=34% Similarity=0.466 Sum_probs=33.5
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc--CCEEEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK--GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~--g~~V~avDlnp~Aie~a~ 134 (380)
..+.+|++||-.++| +|..++.+|+. |..|++++.+++-.+.++
T Consensus 158 ~~~~~g~~vlV~g~g~vG~~~~~la~~~~g~~v~~~~~~~~~~~~~~ 204 (338)
T PRK09422 158 SGIKPGQWIAIYGAGGLGNLALQYAKNVFNAKVIAVDINDDKLALAK 204 (338)
T ss_pred cCCCCCCEEEEECCcHHHHHHHHHHHHhCCCeEEEEeCChHHHHHHH
Confidence 456788888877754 56666666763 789999999999888874
No 432
>PRK06196 oxidoreductase; Provisional
Probab=27.14 E-value=1.6e+02 Score=28.38 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=36.0
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+||-.| |+|.+|..+++ .|.+|++++.+++..+.+...+. .+.++.+|+.+
T Consensus 25 ~~k~vlITG-asggIG~~~a~~L~~~G~~Vv~~~R~~~~~~~~~~~l~------~v~~~~~Dl~d 82 (315)
T PRK06196 25 SGKTAIVTG-GYSGLGLETTRALAQAGAHVIVPARRPDVAREALAGID------GVEVVMLDLAD 82 (315)
T ss_pred CCCEEEEeC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhh------hCeEEEccCCC
Confidence 466777666 45666666554 57899999999887665544432 15677788643
No 433
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=26.93 E-value=2.2e+02 Score=26.58 Aligned_cols=57 Identities=18% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCCeEEEecCCcc-hhHHHH----hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIG-PFAIPA----AQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG-~fsl~a----A~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|+++|-.|++.| .++..+ ++.|++|+.++.+.+..+.+++-.+. +.. +.++..|+.
T Consensus 9 ~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~--~~~-~~~~~~D~~ 70 (258)
T PRK07533 9 AGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEE--LDA-PIFLPLDVR 70 (258)
T ss_pred CCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHh--hcc-ceEEecCcC
Confidence 4678998887653 555544 45688999889886554333332222 122 346777753
No 434
>KOG1207 consensus Diacetyl reductase/L-xylulose reductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=26.92 E-value=2.2e+02 Score=26.89 Aligned_cols=56 Identities=20% Similarity=0.151 Sum_probs=40.2
Q ss_pred CCCeEEEecCCcch---hHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGP---FAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~---fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|.+|+--++|.|. +...+++.|++|+++-.++.-+..+.+-- ...|..+++|.-.
T Consensus 6 aG~~vlvTgagaGIG~~~v~~La~aGA~ViAvaR~~a~L~sLV~e~-----p~~I~Pi~~Dls~ 64 (245)
T KOG1207|consen 6 AGVIVLVTGAGAGIGKEIVLSLAKAGAQVIAVARNEANLLSLVKET-----PSLIIPIVGDLSA 64 (245)
T ss_pred cceEEEeecccccccHHHHHHHHhcCCEEEEEecCHHHHHHHHhhC-----CcceeeeEecccH
Confidence 46777776666553 45677888999999999998887765432 2237889998654
No 435
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=26.86 E-value=2.4e+02 Score=25.99 Aligned_cols=53 Identities=15% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.++|-.| |+|.++..++ +.|.+|+.++.++...+.+.... ..++.++.+|+.
T Consensus 6 ~~~vlItG-as~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~-----~~~~~~~~~D~~ 62 (257)
T PRK07067 6 GKVALLTG-AASGIGEAVAERYLAEGARVVIADIKPARARLAALEI-----GPAAIAVSLDVT 62 (257)
T ss_pred CCEEEEeC-CCchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHh-----CCceEEEEccCC
Confidence 45666555 5667777666 45789999999988776554332 224777888863
No 436
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=26.61 E-value=62 Score=23.60 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=18.3
Q ss_pred CcEEEEEecccC-CCchHHHHH----HHHHHhcccC
Q 046527 303 LPWIHCYCFIRA-NETEELIIS----EAESALNACI 333 (380)
Q Consensus 303 ~p~iH~Y~F~~~-~~~~~~~~~----~~~~~lg~~~ 333 (380)
||+||++++... .+....+.+ .+.+.+|...
T Consensus 1 MP~i~I~~~~grs~eqk~~l~~~it~~l~~~~~~p~ 36 (62)
T PRK00745 1 MPTFHIELFEGRTVEQKRKLVEEITRVTVETLGCPP 36 (62)
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHHHHHHHHcCCCh
Confidence 699999999853 233333333 3455555543
No 437
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=26.53 E-value=1e+02 Score=32.20 Aligned_cols=24 Identities=25% Similarity=0.257 Sum_probs=19.5
Q ss_pred HHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 112 PAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 112 ~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
.+|..|..|+++|+++.=++.++.
T Consensus 18 ~lA~~GHeVv~vDid~~KV~~ln~ 41 (414)
T COG1004 18 CLAELGHEVVCVDIDESKVELLNK 41 (414)
T ss_pred HHHHcCCeEEEEeCCHHHHHHHhC
Confidence 456678899999999998887653
No 438
>PRK05717 oxidoreductase; Validated
Probab=26.42 E-value=1.7e+02 Score=26.96 Aligned_cols=55 Identities=15% Similarity=0.087 Sum_probs=34.9
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|.+||-.| |+|.++..++ ..|++|+.++.++...+.+.... ..++.++.+|+.+
T Consensus 9 ~~k~vlItG-~sg~IG~~~a~~l~~~g~~v~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 67 (255)
T PRK05717 9 NGRVALVTG-AARGIGLGIAAWLIAEGWQVVLADLDRERGSKVAKAL-----GENAWFIAMDVAD 67 (255)
T ss_pred CCCEEEEeC-CcchHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHc-----CCceEEEEccCCC
Confidence 466777665 4566666555 45789999998876544332221 2347788888754
No 439
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=26.17 E-value=1.5e+02 Score=28.98 Aligned_cols=45 Identities=24% Similarity=0.409 Sum_probs=31.3
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++| +|.+++.+|+. |. .|+++|.+++..+.+++
T Consensus 162 ~~~~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~ 209 (351)
T cd08285 162 ANIKLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKE 209 (351)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHH
Confidence 346778888887654 44455555554 66 69999999988777663
No 440
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=26.14 E-value=1.4e+02 Score=28.44 Aligned_cols=43 Identities=12% Similarity=0.186 Sum_probs=31.1
Q ss_pred hccCCCCeEEEecCCcchhHHHH---hh-cCCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAGIGPFAIPA---AQ-KGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcGvG~fsl~a---A~-~g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||=.++ |.++..+ |+ .|.+|++++.+++..+.++.
T Consensus 151 ~~~~~g~~vlV~g~--g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~ 197 (319)
T cd08242 151 VPITPGDKVAVLGD--GKLGLLIAQVLALTGPDVVLVGRHSEKLALARR 197 (319)
T ss_pred cCCCCCCEEEEECC--CHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH
Confidence 34677888887754 5555554 43 37789999999998888875
No 441
>PRK07035 short chain dehydrogenase; Provisional
Probab=26.10 E-value=3.3e+02 Score=24.86 Aligned_cols=56 Identities=14% Similarity=0.030 Sum_probs=36.2
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+||=.|++ |.++..++ +.|.+|+.++.++...+.+...+...+ .++.++..|+.
T Consensus 8 ~k~vlItGas-~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~ 67 (252)
T PRK07035 8 GKIALVTGAS-RGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIG 67 (252)
T ss_pred CCEEEEECCC-cHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCC
Confidence 4566666544 55555544 458899999999888776666554332 23566777764
No 442
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=25.81 E-value=1.4e+02 Score=28.82 Aligned_cols=44 Identities=23% Similarity=0.312 Sum_probs=30.6
Q ss_pred ccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 92 QFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 92 ~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
.+.++++||-.++| +|.+++.+|+. |.+|++++.+++-.+.+++
T Consensus 160 ~~~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~ 205 (333)
T cd08296 160 GAKPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARK 205 (333)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHH
Confidence 56778888887743 44444445543 6799999999887777743
No 443
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=25.50 E-value=1.5e+02 Score=28.63 Aligned_cols=45 Identities=24% Similarity=0.382 Sum_probs=33.5
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||..++| +|.+++.+|+. |.+|+++..+++-.+.+++
T Consensus 155 ~~l~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~ 201 (337)
T cd08261 155 AGVTAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARE 201 (337)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHH
Confidence 456788899888765 36666666765 7799999888888877743
No 444
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=25.35 E-value=1.5e+02 Score=30.54 Aligned_cols=44 Identities=16% Similarity=0.149 Sum_probs=36.0
Q ss_pred CeEEEecCCcchhHHHHhhc----------CCEEEEEeCCHHHHHHHHHHHHHc
Q 046527 97 ETICDMFAGIGPFAIPAAQK----------GCIVFANDLNPDSVHYLKINAKVN 140 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~~----------g~~V~avDlnp~Aie~a~~Na~lN 140 (380)
-.++++|+|.|.++.-+++. .++++-||.||+..+.=+.+++..
T Consensus 79 ~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~ 132 (370)
T COG1565 79 LKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKAT 132 (370)
T ss_pred ceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhcc
Confidence 47999999999999876643 348999999999998877777644
No 445
>PRK07774 short chain dehydrogenase; Provisional
Probab=25.34 E-value=2.5e+02 Score=25.59 Aligned_cols=58 Identities=14% Similarity=0.154 Sum_probs=37.3
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++|=.| |+|.++..++ ..|.+|+.++.++...+.+...+... ...+.++..|+.+
T Consensus 5 ~~k~vlItG-asg~iG~~la~~l~~~g~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~~ 66 (250)
T PRK07774 5 DDKVAIVTG-AAGGIGQAYAEALAREGASVVVADINAEGAERVAKQIVAD--GGTAIAVQVDVSD 66 (250)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEcCCCC
Confidence 355666555 5666676665 45789999999987776655544322 2235677778643
No 446
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=25.23 E-value=2.7e+02 Score=25.63 Aligned_cols=58 Identities=16% Similarity=0.064 Sum_probs=38.4
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+||-.| |+|.++..++ ..|++|+.++.+....+.+...++.- ..++.++..|+.+
T Consensus 10 ~~k~vlVtG-~s~gIG~~la~~l~~~G~~vv~~~r~~~~~~~~~~~l~~~--~~~~~~~~~D~~~ 71 (255)
T PRK06113 10 DGKCAIITG-AGAGIGKEIAITFATAGASVVVSDINADAANHVVDEIQQL--GGQAFACRCDITS 71 (255)
T ss_pred CCCEEEEEC-CCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhc--CCcEEEEEccCCC
Confidence 367788887 4555565544 45789999999888777665544332 2346778888654
No 447
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=25.22 E-value=2e+02 Score=28.45 Aligned_cols=42 Identities=14% Similarity=0.034 Sum_probs=27.2
Q ss_pred cCCCCeEEEecCC-cchhHHHHhhc-CCEEEEEeCCHHHHHHHH
Q 046527 93 FRPGETICDMFAG-IGPFAIPAAQK-GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 93 i~~g~~VLDlfcG-vG~fsl~aA~~-g~~V~avDlnp~Aie~a~ 134 (380)
..+|++|+-.++| +|.+++.+|+. |++|++++.+++..+.+.
T Consensus 178 ~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~ 221 (357)
T PLN02514 178 KQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEAL 221 (357)
T ss_pred CCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHH
Confidence 3578888866443 44445555554 678999988887655443
No 448
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=25.21 E-value=2.3e+02 Score=26.95 Aligned_cols=58 Identities=14% Similarity=0.036 Sum_probs=33.0
Q ss_pred CCCeEEEecCCc-chhHH----HHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGI-GPFAI----PAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGv-G~fsl----~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.++++|-.|++. +.++. .+++.|++|+..+.+....+.+++-....+ .. .++..|+.+
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d 66 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSK 66 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCC
Confidence 467888888742 34444 444568899999988643333333222222 22 456778643
No 449
>COG0338 Dam Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=25.20 E-value=31 Score=33.99 Aligned_cols=44 Identities=34% Similarity=0.465 Sum_probs=35.4
Q ss_pred HHHhccCCCCeEEEecCCcchhHHHHhhcCCEEEEEeCCHHHHHH
Q 046527 88 RIISQFRPGETICDMFAGIGPFAIPAAQKGCIVFANDLNPDSVHY 132 (380)
Q Consensus 88 r~i~~i~~g~~VLDlfcGvG~fsl~aA~~g~~V~avDlnp~Aie~ 132 (380)
.++..+..+...++.|+|.|+..+.++.. .+++..|+|++.+..
T Consensus 18 ~i~~~lP~~~~y~EPF~GggaV~i~~~~~-~~~i~~Din~~Lvn~ 61 (274)
T COG0338 18 QIIPHLPEGVSYIEPFVGGGAVFINLAAK-KKYILNDINPDLVNL 61 (274)
T ss_pred HHHHhCCCCceeeCCccCcceeeeehhhh-hhhhHhcCCHHHHHH
Confidence 34455666569999999999999988775 688999999998853
No 450
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=25.14 E-value=2.3e+02 Score=26.35 Aligned_cols=44 Identities=27% Similarity=0.447 Sum_probs=32.2
Q ss_pred hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~ 134 (380)
..+.+++.|+-.+| ++|...+.+++. |+.|++++.+++..+.++
T Consensus 135 ~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 181 (323)
T cd08241 135 ARLQPGETVLVLGAAGGVGLAAVQLAKALGARVIAAASSEEKLALAR 181 (323)
T ss_pred cCCCCCCEEEEEcCCchHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH
Confidence 45678899998886 355555555553 779999999988877764
No 451
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=24.81 E-value=1.7e+02 Score=28.29 Aligned_cols=42 Identities=21% Similarity=0.120 Sum_probs=28.9
Q ss_pred CeEEEecCCcc--hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHH
Q 046527 97 ETICDMFAGIG--PFAIPAAQKGCIVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 97 ~~VLDlfcGvG--~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~ 138 (380)
.+|.=+|+|.= .++..++..|..|+.+|.+++.++.+...+.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~ 48 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATIN 48 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHH
Confidence 35666666632 3344555668899999999999988665443
No 452
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=24.63 E-value=78 Score=33.38 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=21.5
Q ss_pred CCeEEEeccCCCCCceEEEEEEech
Q 046527 335 DPIFHKVRNVAPNKAMFCLSFRLPE 359 (380)
Q Consensus 335 ~~~~~~VR~VaP~k~m~c~sF~lp~ 359 (380)
...++.|||=+||.+|.-+.|+=-.
T Consensus 102 I~~irivRd~~pnrymvLIkFr~q~ 126 (493)
T KOG0804|consen 102 ISDIRIVRDGMPNRYMVLIKFRDQA 126 (493)
T ss_pred hheeEEeecCCCceEEEEEEeccch
Confidence 3468999999999999999998544
No 453
>PRK06940 short chain dehydrogenase; Provisional
Probab=24.60 E-value=2.3e+02 Score=26.75 Aligned_cols=55 Identities=18% Similarity=0.164 Sum_probs=35.5
Q ss_pred CeEEEecCCcchhHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 97 ETICDMFAGIGPFAIPAAQ---KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA~---~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++++--|+ |.++..+++ .|++|+.++.+++.++.+.+.+...+ .++.++..|+.+
T Consensus 3 k~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d 60 (275)
T PRK06940 3 EVVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSS 60 (275)
T ss_pred CEEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCC
Confidence 34554554 567777664 37799999999887766655544332 247778888643
No 454
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=24.58 E-value=3.1e+02 Score=24.87 Aligned_cols=55 Identities=18% Similarity=0.035 Sum_probs=36.3
Q ss_pred eEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 98 TICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+||=.| |+|.++..+++ .|.+|++++.++...+.+..-....+ .++.++.+|+.+
T Consensus 3 ~vlItG-a~g~lG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~ 61 (255)
T TIGR01963 3 TALVTG-AASGIGLAIALALAAAGANVVVNDLGEAGAEAAAKVATDAG--GSVIYLVADVTK 61 (255)
T ss_pred EEEEcC-CcchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEECCCCC
Confidence 444444 56777776664 47799999999887766665444333 347788888643
No 455
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=24.57 E-value=3.6e+02 Score=25.15 Aligned_cols=57 Identities=18% Similarity=0.063 Sum_probs=37.3
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.++|-.|+ +|.++..++ +.|++|+.++.+++..+.+.+.+... ..++.++.+|+.
T Consensus 9 ~~k~vlVtGa-s~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~Dl~ 69 (278)
T PRK08277 9 KGKVAVITGG-GGVLGGAMAKELARAGAKVAILDRNQEKAEAVVAEIKAA--GGEALAVKADVL 69 (278)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCeEEEEECCCC
Confidence 3556665554 455555544 45789999999988777666555433 234778888864
No 456
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=24.44 E-value=1.5e+02 Score=28.55 Aligned_cols=37 Identities=14% Similarity=0.136 Sum_probs=25.4
Q ss_pred EEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHH
Q 046527 99 ICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 99 VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~ 135 (380)
|.=+|+|. |.++..+++.|.+|+++|.+++.++.+..
T Consensus 3 I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~ 41 (279)
T PRK07417 3 IGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIE 41 (279)
T ss_pred EEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH
Confidence 44455552 34555555667899999999998887653
No 457
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=24.37 E-value=1.5e+02 Score=28.47 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=31.5
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhhc-CCE-EEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQK-GCI-VFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~~-g~~-V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||..++| +|..++.+|+. |.+ |++++.+++..+.+++
T Consensus 155 ~~~~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~ 202 (334)
T cd08234 155 LGIKPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKK 202 (334)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHH
Confidence 456788899888654 35555555554 555 8999999988877643
No 458
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=24.10 E-value=1.5e+02 Score=29.66 Aligned_cols=44 Identities=25% Similarity=0.383 Sum_probs=32.8
Q ss_pred ccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHH
Q 046527 92 QFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 92 ~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~ 135 (380)
.+.+|++||-.++ ++|..++.+|+. |+.+++++.+++-.+.+++
T Consensus 190 ~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv~~~~s~~~~~~~~~ 236 (393)
T cd08246 190 TVKPGDNVLIWGASGGLGSMAIQLARAAGANPVAVVSSEEKAEYCRA 236 (393)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHH
Confidence 4677888888875 466666666654 7788899999988888764
No 459
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=24.07 E-value=1.5e+02 Score=30.35 Aligned_cols=46 Identities=20% Similarity=0.177 Sum_probs=35.1
Q ss_pred hccCCCCeEEEecC-CcchhHHHHhhc-CCEEEEEeCCHHHHHHHHHH
Q 046527 91 SQFRPGETICDMFA-GIGPFAIPAAQK-GCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 91 ~~i~~g~~VLDlfc-GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~~N 136 (380)
..+.+|++|--+|+ |.|.+++..|+. |.+|+++|.+...-+.+-+.
T Consensus 177 ~g~~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~ 224 (360)
T KOG0023|consen 177 SGLGPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKS 224 (360)
T ss_pred cCCCCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHh
Confidence 34568988876665 489999999986 77999999997666555443
No 460
>KOG2782 consensus Putative SAM dependent methyltransferases [General function prediction only]
Probab=24.04 E-value=72 Score=30.94 Aligned_cols=46 Identities=22% Similarity=0.236 Sum_probs=40.5
Q ss_pred cCCCCeEEEecCCcchhHHHHhhcCC--EEEEEeCCHHHHHHHHHHHH
Q 046527 93 FRPGETICDMFAGIGPFAIPAAQKGC--IVFANDLNPDSVHYLKINAK 138 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl~aA~~g~--~V~avDlnp~Aie~a~~Na~ 138 (380)
..+|...+|+--|.|.-+-.+.++.. ++++.|.+|-|.+.|+.-..
T Consensus 41 pv~g~sf~DmTfGagGHt~~ilqk~se~k~yalDrDP~A~~La~~~s~ 88 (303)
T KOG2782|consen 41 PVRGRSFVDMTFGAGGHTSSILQKHSELKNYALDRDPVARKLAHFHSD 88 (303)
T ss_pred CCCCceEEEEeccCCcchHHHHHhCcHhhhhhhccChHHHHHHHHhhH
Confidence 45688999999999999999998864 89999999999999987763
No 461
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=23.28 E-value=1.4e+02 Score=33.35 Aligned_cols=43 Identities=19% Similarity=0.182 Sum_probs=33.9
Q ss_pred CeEEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHH
Q 046527 97 ETICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKINAKV 139 (380)
Q Consensus 97 ~~VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~l 139 (380)
.+|.-+|+|+ +.++..+|..|..|+.+|.++++++.+...+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~ 380 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFK 380 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHH
Confidence 4688888885 445556777889999999999999988776653
No 462
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=23.24 E-value=2.4e+02 Score=26.40 Aligned_cols=56 Identities=16% Similarity=0.017 Sum_probs=33.6
Q ss_pred CCCeEEEecCCc-chhHHHHh----hcCCEEEEEeCC---HHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGI-GPFAIPAA----QKGCIVFANDLN---PDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGv-G~fsl~aA----~~g~~V~avDln---p~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|+++|-.|++. +.++..++ +.|++|+..+.+ ++.++.+..- .+ ..++.++..|+.
T Consensus 6 ~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~---~~-~~~~~~~~~Dv~ 69 (257)
T PRK08594 6 EGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADT---LE-GQESLLLPCDVT 69 (257)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHH---cC-CCceEEEecCCC
Confidence 467888888763 56666555 458888888654 3334333322 11 234777888874
No 463
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=23.16 E-value=2e+02 Score=26.50 Aligned_cols=40 Identities=20% Similarity=0.237 Sum_probs=29.8
Q ss_pred CCCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHH
Q 046527 95 PGETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~N 136 (380)
.|.+|+=.|.| .++..+++ .|++|+++|.+++.++.+...
T Consensus 27 ~gk~v~I~G~G--~vG~~~A~~L~~~G~~Vvv~D~~~~~~~~~~~~ 70 (200)
T cd01075 27 EGKTVAVQGLG--KVGYKLAEHLLEEGAKLIVADINEEAVARAAEL 70 (200)
T ss_pred CCCEEEEECCC--HHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHH
Confidence 56788888665 56666554 478999999999887776653
No 464
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=22.89 E-value=1.5e+02 Score=25.95 Aligned_cols=48 Identities=29% Similarity=0.381 Sum_probs=31.9
Q ss_pred cCCCCeEEEecCCcchhHH---HHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 93 FRPGETICDMFAGIGPFAI---PAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 93 i~~g~~VLDlfcGvG~fsl---~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
...| +|+++ |+|.|.- .++++|+.|++.|+++. ++. + .+.++.-|+.+
T Consensus 12 ~~~g-kVvEV--GiG~~~~VA~~L~e~g~dv~atDI~~~-------~a~----~-g~~~v~DDitn 62 (129)
T COG1255 12 NARG-KVVEV--GIGFFLDVAKRLAERGFDVLATDINEK-------TAP----E-GLRFVVDDITN 62 (129)
T ss_pred hcCC-cEEEE--ccchHHHHHHHHHHcCCcEEEEecccc-------cCc----c-cceEEEccCCC
Confidence 3455 89999 5555543 45667899999999997 221 2 26677766643
No 465
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=22.80 E-value=1.7e+02 Score=29.80 Aligned_cols=45 Identities=33% Similarity=0.466 Sum_probs=28.8
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-cCC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-KGC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++||-.++| +|.+++.+|+ .|+ .|++.|.+++-.+.+++
T Consensus 181 ~~~~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~ 228 (393)
T TIGR02819 181 AGVGPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARS 228 (393)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHH
Confidence 456788888775443 3444444454 365 46677899888877764
No 466
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=22.69 E-value=73 Score=27.06 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred eEEEeccCCCCCceEEEEEEech
Q 046527 337 IFHKVRNVAPNKAMFCLSFRLPE 359 (380)
Q Consensus 337 ~~~~VR~VaP~k~m~c~sF~lp~ 359 (380)
.++.+||=.||.+|.-+.|+=+.
T Consensus 43 ~~riird~~pnrymVLikF~~~~ 65 (110)
T PF07576_consen 43 HIRIIRDGTPNRYMVLIKFRDQE 65 (110)
T ss_pred EEEEeeCCCCceEEEEEEECCHH
Confidence 57899999999999999998654
No 467
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=22.50 E-value=1.9e+02 Score=27.79 Aligned_cols=59 Identities=15% Similarity=0.170 Sum_probs=34.0
Q ss_pred CCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
|.+||-. .|+|.+|..+++ .|.+|++.-.++...+.+..-....+...+++++.+|+.+
T Consensus 5 ~~~vlVT-GatG~iG~~l~~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~ 67 (322)
T PLN02986 5 GKLVCVT-GASGYIASWIVKLLLLRGYTVKATVRDLTDRKKTEHLLALDGAKERLKLFKADLLE 67 (322)
T ss_pred CCEEEEE-CCCcHHHHHHHHHHHHCCCEEEEEECCCcchHHHHHHHhccCCCCceEEEecCCCC
Confidence 4555555 467788777654 4778887655554333332222222333458888888753
No 468
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=22.50 E-value=1.7e+02 Score=29.82 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=26.7
Q ss_pred CCeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHH
Q 046527 96 GETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 96 g~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~ 135 (380)
+.+|+-+|+| +|..++..++ .|++|+.+|.+++..+.+..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~ 208 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDA 208 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHH
Confidence 3457777666 4444444443 37799999999987766544
No 469
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=22.14 E-value=1.8e+02 Score=25.84 Aligned_cols=40 Identities=25% Similarity=0.255 Sum_probs=26.9
Q ss_pred CeEEEecCC-cchhHHHHhh-cCCEEEEEeCCHHHHHHHHHH
Q 046527 97 ETICDMFAG-IGPFAIPAAQ-KGCIVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 97 ~~VLDlfcG-vG~fsl~aA~-~g~~V~avDlnp~Aie~a~~N 136 (380)
.+|+=+|+| +|.-++.++. .|++|+..|.++...+..+.+
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~~~~~~~~~~ 62 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERPERLRQLESL 62 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSHHHHHHHHHT
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCHHHHHhhhcc
Confidence 577888777 4444444444 488999999999888766543
No 470
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=22.03 E-value=94 Score=33.95 Aligned_cols=49 Identities=22% Similarity=0.359 Sum_probs=34.2
Q ss_pred eEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 98 TICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
.|+= ||-|.++..+++ .+..++.+|.|++.++.+++ .| ..++.||+.+.
T Consensus 402 ~vII--~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~----~g----~~v~~GDat~~ 454 (621)
T PRK03562 402 RVII--AGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRK----FG----MKVFYGDATRM 454 (621)
T ss_pred cEEE--EecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHh----cC----CeEEEEeCCCH
Confidence 4544 455666665554 36689999999999998864 12 46788998543
No 471
>PRK10083 putative oxidoreductase; Provisional
Probab=21.83 E-value=2e+02 Score=27.75 Aligned_cols=45 Identities=13% Similarity=0.053 Sum_probs=31.8
Q ss_pred hccCCCCeEEEecCC-cchhHHHHhh-c-CC-EEEEEeCCHHHHHHHHH
Q 046527 91 SQFRPGETICDMFAG-IGPFAIPAAQ-K-GC-IVFANDLNPDSVHYLKI 135 (380)
Q Consensus 91 ~~i~~g~~VLDlfcG-vG~fsl~aA~-~-g~-~V~avDlnp~Aie~a~~ 135 (380)
..+.+|++|+=.++| +|.+++.+|+ . |+ .|++++.+++..+.+++
T Consensus 156 ~~~~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~ 204 (339)
T PRK10083 156 TGPTEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKE 204 (339)
T ss_pred cCCCCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHH
Confidence 356788888887754 4555555666 3 76 58889999988877764
No 472
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=21.81 E-value=1.6e+02 Score=30.67 Aligned_cols=38 Identities=21% Similarity=0.229 Sum_probs=25.9
Q ss_pred cCCCCeEEEecCCc-chhHHHHhh-cCCEEEEEeCCHHHH
Q 046527 93 FRPGETICDMFAGI-GPFAIPAAQ-KGCIVFANDLNPDSV 130 (380)
Q Consensus 93 i~~g~~VLDlfcGv-G~fsl~aA~-~g~~V~avDlnp~Ai 130 (380)
...|++|+-+|+|. |......++ .|++|+++|.+|.-.
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~ 231 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRA 231 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhH
Confidence 35789999997774 333333333 377999999999643
No 473
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=21.76 E-value=1.5e+02 Score=30.32 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=26.1
Q ss_pred CCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHH
Q 046527 104 AGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKI 135 (380)
Q Consensus 104 cGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~ 135 (380)
||.|.+|..+++ .|..|+.+|.+++.++.+++
T Consensus 6 iG~G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~ 41 (453)
T PRK09496 6 VGAGQVGYTLAENLSGENNDVTVIDTDEERLRRLQD 41 (453)
T ss_pred ECCCHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHh
Confidence 466888888876 36799999999999887765
No 474
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=21.73 E-value=2.4e+02 Score=26.38 Aligned_cols=44 Identities=27% Similarity=0.374 Sum_probs=32.9
Q ss_pred hccCCCCeEEEecC--CcchhHHHHhhc-CCEEEEEeCCHHHHHHHH
Q 046527 91 SQFRPGETICDMFA--GIGPFAIPAAQK-GCIVFANDLNPDSVHYLK 134 (380)
Q Consensus 91 ~~i~~g~~VLDlfc--GvG~fsl~aA~~-g~~V~avDlnp~Aie~a~ 134 (380)
..+.+|++||-.++ ++|.+++.+|+. |++|+++..+++-.+.++
T Consensus 138 ~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~~~~~~~~~ 184 (320)
T cd08243 138 LGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRSPERAALLK 184 (320)
T ss_pred cCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHH
Confidence 34677888887764 577777777764 779999999988777664
No 475
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=21.69 E-value=2.1e+02 Score=27.73 Aligned_cols=41 Identities=20% Similarity=0.111 Sum_probs=28.7
Q ss_pred CeEEEecCCc--chhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 97 ETICDMFAGI--GPFAIPAAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 97 ~~VLDlfcGv--G~fsl~aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
.+|.=+|+|. +.++..+++.|..|+.+|.+++.++.++..+
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~ 47 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVI 47 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHH
Confidence 3566676663 2344445566789999999999998887653
No 476
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=21.39 E-value=2e+02 Score=26.39 Aligned_cols=48 Identities=19% Similarity=0.203 Sum_probs=31.5
Q ss_pred cCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 103 FAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 103 fcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
..|+|.+|..++ ..|++|++++.+++.++.+...+ ..++.++.+|+.+
T Consensus 6 tGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~ 57 (248)
T PRK10538 6 TGATAGFGECITRRFIQQGHKVIATGRRQERLQELKDEL-----GDNLYIAQLDVRN 57 (248)
T ss_pred ECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHh-----ccceEEEEecCCC
Confidence 345666666655 45789999999988665544332 1247778888744
No 477
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=21.26 E-value=2.2e+02 Score=27.55 Aligned_cols=41 Identities=22% Similarity=0.084 Sum_probs=27.5
Q ss_pred CeEEEecCC--cchhHHHHhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 97 ETICDMFAG--IGPFAIPAAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 97 ~~VLDlfcG--vG~fsl~aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
.+|.=+|+| -..++..++..|..|+.+|.+++.++.+++.+
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~ 47 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSI 47 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHH
Confidence 356666655 22344445566789999999999988766543
No 478
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=21.25 E-value=3.6e+02 Score=25.02 Aligned_cols=58 Identities=17% Similarity=0.090 Sum_probs=39.1
Q ss_pred CCCeEEEecCCcchhHH----HHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAI----PAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl----~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.++|-.|++ |.++. .++..|++|+..+.+++.++.+..+....+ .++.++.+|+.+
T Consensus 9 ~~k~~lItGa~-~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~ 70 (265)
T PRK07097 9 KGKIALITGAS-YGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTD 70 (265)
T ss_pred CCCEEEEeCCC-chHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCC
Confidence 45667777654 34444 345568899999999988887777665433 247788888743
No 479
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=21.24 E-value=2.8e+02 Score=25.96 Aligned_cols=58 Identities=12% Similarity=-0.076 Sum_probs=32.3
Q ss_pred CCCeEEEecCCc----c-hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGI----G-PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGv----G-~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.|+++|-.|++. | .++..+++.|++|+..+.++..-+.+++-....+ . ..++..|+.+
T Consensus 7 ~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~~r~~~~~~~~~~l~~~~g--~-~~~~~~Dv~~ 69 (260)
T PRK06603 7 QGKKGLITGIANNMSISWAIAQLAKKHGAELWFTYQSEVLEKRVKPLAEEIG--C-NFVSELDVTN 69 (260)
T ss_pred CCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEEeCchHHHHHHHHHHHhcC--C-ceEEEccCCC
Confidence 467888888754 3 2344566778899888877543333333222212 1 2345677643
No 480
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=21.09 E-value=2e+02 Score=26.59 Aligned_cols=53 Identities=15% Similarity=0.056 Sum_probs=34.9
Q ss_pred eEEEecCCcchhHHHH----hhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 98 TICDMFAGIGPFAIPA----AQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~a----A~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
++|-.|+ +|.++..+ ++.|++|+.++.+++.++.+...+...+ .+.++..|+.
T Consensus 2 ~vlItGa-s~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~---~~~~~~~Dv~ 58 (259)
T PRK08340 2 NVLVTAS-SRGIGFNVARELLKKGARVVISSRNEENLEKALKELKEYG---EVYAVKADLS 58 (259)
T ss_pred eEEEEcC-CcHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC---CceEEEcCCC
Confidence 3455554 35555554 4568899999999988877766654332 3677888863
No 481
>PRK08303 short chain dehydrogenase; Provisional
Probab=20.99 E-value=3.2e+02 Score=26.59 Aligned_cols=57 Identities=12% Similarity=-0.012 Sum_probs=34.2
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCH----------HHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNP----------DSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp----------~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.|+++|-.|++. .++..++ ..|++|+.++.+. +.++.+.+-+...+ .++.++..|+.
T Consensus 7 ~~k~~lITGgs~-GIG~aia~~la~~G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~~~~~~Dv~ 77 (305)
T PRK08303 7 RGKVALVAGATR-GAGRGIAVELGAAGATVYVTGRSTRARRSEYDRPETIEETAELVTAAG--GRGIAVQVDHL 77 (305)
T ss_pred CCCEEEEeCCCc-hHHHHHHHHHHHCCCEEEEEecccccccccccccchHHHHHHHHHhcC--CceEEEEcCCC
Confidence 467787777544 4555544 4588999988873 34444444443332 34667888864
No 482
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=20.76 E-value=3.3e+02 Score=26.33 Aligned_cols=57 Identities=12% Similarity=0.015 Sum_probs=36.7
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.+.++|-.| |+|.++..++ +.|++|+.++.+++..+.+...+... ..++.++..|+.
T Consensus 5 ~~k~vlVTG-as~gIG~~~a~~L~~~G~~V~~~~r~~~~~~~~~~~l~~~--~~~~~~~~~Dl~ 65 (322)
T PRK07453 5 AKGTVIITG-ASSGVGLYAAKALAKRGWHVIMACRNLKKAEAAAQELGIP--PDSYTIIHIDLG 65 (322)
T ss_pred CCCEEEEEc-CCChHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHhhcc--CCceEEEEecCC
Confidence 355666665 4566666555 45789999999988776655544321 234778888863
No 483
>PRK05599 hypothetical protein; Provisional
Probab=20.59 E-value=3.4e+02 Score=25.02 Aligned_cols=56 Identities=18% Similarity=0.157 Sum_probs=36.1
Q ss_pred eEEEecCCcchhHHHHhh---cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 98 TICDMFAGIGPFAIPAAQ---KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 98 ~VLDlfcGvG~fsl~aA~---~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
++|-.|+ ++.++..+++ .|.+|+.++.+++.++.+.+.++..+- +.+.++..|+.+
T Consensus 2 ~vlItGa-s~GIG~aia~~l~~g~~Vil~~r~~~~~~~~~~~l~~~~~-~~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGG-TSDIAGEIATLLCHGEDVVLAARRPEAAQGLASDLRQRGA-TSVHVLSFDAQD 60 (246)
T ss_pred eEEEEeC-ccHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhccC-CceEEEEcccCC
Confidence 3454444 4455555443 377999999999888877776655442 236778888644
No 484
>KOG0919 consensus C-5 cytosine-specific DNA methylase [Transcription]
Probab=20.55 E-value=67 Score=31.55 Aligned_cols=40 Identities=23% Similarity=0.252 Sum_probs=31.1
Q ss_pred CeEEEecCCcchhHHHHh--hcCC-EEEEEeCCHHHHHHHHHH
Q 046527 97 ETICDMFAGIGPFAIPAA--QKGC-IVFANDLNPDSVHYLKIN 136 (380)
Q Consensus 97 ~~VLDlfcGvG~fsl~aA--~~g~-~V~avDlnp~Aie~a~~N 136 (380)
-+|+++++|+|..-..+- ...+ -|.|+|+|+.|-+.-..|
T Consensus 4 LrVlelysg~ggmhyal~~a~ipaqiVaAiDvNtvANevY~~N 46 (338)
T KOG0919|consen 4 LRVLELYSGHGGMHYALEDAQIPAQIVAAIDVNTVANEVYAHN 46 (338)
T ss_pred eehhhhhhccchhhhhHhhhcCchhhEEEEecchhHHHHHhcC
Confidence 379999999998755443 3333 788999999998887777
No 485
>PRK05993 short chain dehydrogenase; Provisional
Probab=20.53 E-value=2.4e+02 Score=26.55 Aligned_cols=51 Identities=22% Similarity=0.181 Sum_probs=33.6
Q ss_pred CCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 96 GETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
+++||-.|| +|.+|..++ +.|.+|++++.+++.++.+.. . .++++.+|+.+
T Consensus 4 ~k~vlItGa-sggiG~~la~~l~~~G~~Vi~~~r~~~~~~~l~~----~----~~~~~~~Dl~d 58 (277)
T PRK05993 4 KRSILITGC-SSGIGAYCARALQSDGWRVFATCRKEEDVAALEA----E----GLEAFQLDYAE 58 (277)
T ss_pred CCEEEEeCC-CcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHH----C----CceEEEccCCC
Confidence 456776664 566666555 457899999999887765432 1 25667777643
No 486
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=20.51 E-value=3.3e+02 Score=25.77 Aligned_cols=57 Identities=14% Similarity=-0.091 Sum_probs=33.6
Q ss_pred CCCeEEEecCCc----c-hhHHHHhhcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGI----G-PFAIPAAQKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGv----G-~fsl~aA~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+++++|-.|++. | .++..+++.|++|+.++.+....+.+++-....+ . ..++..|+.
T Consensus 6 ~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g--~-~~~~~~Dv~ 67 (271)
T PRK06505 6 QGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG--S-DFVLPCDVE 67 (271)
T ss_pred CCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC--C-ceEEeCCCC
Confidence 567888888764 2 3344556678899988877644433333222222 1 235677764
No 487
>PRK09135 pteridine reductase; Provisional
Probab=20.44 E-value=3.6e+02 Score=24.26 Aligned_cols=59 Identities=10% Similarity=-0.019 Sum_probs=35.1
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCC-HHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLN-PDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDln-p~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+.+||-.|+ +|.++..++ +.|++|++++.+ +...+.+...+.... .+.+.++.+|+.+
T Consensus 5 ~~~~vlItGa-~g~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~~~-~~~~~~~~~Dl~~ 68 (249)
T PRK09135 5 SAKVALITGG-ARRIGAAIARTLHAAGYRVAIHYHRSAAEADALAAELNALR-PGSAAALQADLLD 68 (249)
T ss_pred CCCEEEEeCC-CchHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHHHhhc-CCceEEEEcCCCC
Confidence 3467777774 567776655 457899999875 333443333332211 1237788888743
No 488
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=20.39 E-value=1.7e+02 Score=30.32 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=37.0
Q ss_pred CeEEEecCC-cchhHHH-HhhcC-CEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHHH
Q 046527 97 ETICDMFAG-IGPFAIP-AAQKG-CIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAREF 156 (380)
Q Consensus 97 ~~VLDlfcG-vG~fsl~-aA~~g-~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e~ 156 (380)
..||-+||| +|.-... +|+.+ .+|+..|.+++.+..+..+... +++....|+.+.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~ 59 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADV 59 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccCh
Confidence 467888884 4444333 34556 5999999999998887766432 467777776443
No 489
>COG3805 DodA Aromatic ring-cleaving dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.37 E-value=1.2e+02 Score=25.88 Aligned_cols=17 Identities=41% Similarity=0.700 Sum_probs=13.8
Q ss_pred eccCCCC-CceEEEEEEe
Q 046527 341 VRNVAPN-KAMFCLSFRL 357 (380)
Q Consensus 341 VR~VaP~-k~m~c~sF~l 357 (380)
=|.|.|+ |.||-++|+=
T Consensus 45 ~~~vGPH~k~Myqv~F~~ 62 (120)
T COG3805 45 PRRVGPHVKPMYQVHFRD 62 (120)
T ss_pred cCCCCCCCccceeEeccc
Confidence 4678887 7899999974
No 490
>PRK08589 short chain dehydrogenase; Validated
Probab=20.30 E-value=4.5e+02 Score=24.58 Aligned_cols=56 Identities=23% Similarity=0.212 Sum_probs=34.1
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
.++++|-.|+ +|.++..++ ..|++|+.++.+ +..+.+...+...+ .++.++..|+.
T Consensus 5 ~~k~vlItGa-s~gIG~aia~~l~~~G~~vi~~~r~-~~~~~~~~~~~~~~--~~~~~~~~Dl~ 64 (272)
T PRK08589 5 ENKVAVITGA-STGIGQASAIALAQEGAYVLAVDIA-EAVSETVDKIKSNG--GKAKAYHVDIS 64 (272)
T ss_pred CCCEEEEECC-CchHHHHHHHHHHHCCCEEEEEeCc-HHHHHHHHHHHhcC--CeEEEEEeecC
Confidence 3566776664 445555544 568899999999 44444444443322 24777888864
No 491
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=20.20 E-value=2e+02 Score=27.70 Aligned_cols=40 Identities=25% Similarity=0.404 Sum_probs=29.1
Q ss_pred CCCeEEEecCCc-chhHHHHhhc-CC-EEEEEeCCHHHHHHHH
Q 046527 95 PGETICDMFAGI-GPFAIPAAQK-GC-IVFANDLNPDSVHYLK 134 (380)
Q Consensus 95 ~g~~VLDlfcGv-G~fsl~aA~~-g~-~V~avDlnp~Aie~a~ 134 (380)
++++||..++|. |.+++.+|+. |. .|++++.+++..+.++
T Consensus 165 ~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~ 207 (339)
T cd08232 165 AGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVAR 207 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHH
Confidence 788888876653 5566666654 66 7999999988887554
No 492
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=20.14 E-value=2.9e+02 Score=30.51 Aligned_cols=60 Identities=18% Similarity=0.144 Sum_probs=38.7
Q ss_pred CCCeEEEecCCcchhHHHHh----hcCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHHH
Q 046527 95 PGETICDMFAGIGPFAIPAA----QKGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDARE 155 (380)
Q Consensus 95 ~g~~VLDlfcGvG~fsl~aA----~~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~e 155 (380)
.+++||-.| |+|.++..++ +.|++|++++.+++..+.+...+....-.+.+.++.+|+.+
T Consensus 413 ~gkvvLVTG-asggIG~aiA~~La~~Ga~Vvi~~r~~~~~~~~~~~l~~~~~~~~~~~v~~Dvtd 476 (676)
T TIGR02632 413 ARRVAFVTG-GAGGIGRETARRLAAEGAHVVLADLNLEAAEAVAAEINGQFGAGRAVALKMDVTD 476 (676)
T ss_pred CCCEEEEeC-CCcHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhhcCCCcEEEEECCCCC
Confidence 356777665 4566666655 45889999999998877665554321112246778888743
No 493
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=20.14 E-value=2.1e+02 Score=25.08 Aligned_cols=39 Identities=18% Similarity=0.077 Sum_probs=28.0
Q ss_pred EEEecCCcchhHHH--HhhcCCEEEEEeCCHHHHHHHHHHH
Q 046527 99 ICDMFAGIGPFAIP--AAQKGCIVFANDLNPDSVHYLKINA 137 (380)
Q Consensus 99 VLDlfcGvG~fsl~--aA~~g~~V~avDlnp~Aie~a~~Na 137 (380)
|.-+|+|.++.++. ++..|.+|+-...+++.++.++++-
T Consensus 2 I~ViGaG~~G~AlA~~la~~g~~V~l~~~~~~~~~~i~~~~ 42 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADNGHEVTLWGRDEEQIEEINETR 42 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHCTEEEEEETSCHHHHHHHHHHT
T ss_pred EEEECcCHHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHhC
Confidence 45566666665553 4456779999999998888877663
No 494
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=20.05 E-value=3.7e+02 Score=24.00 Aligned_cols=56 Identities=18% Similarity=0.129 Sum_probs=37.3
Q ss_pred CCeEEEecCCcchhHHHHhh----cCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEeccHH
Q 046527 96 GETICDMFAGIGPFAIPAAQ----KGCIVFANDLNPDSVHYLKINAKVNKVDNYVRAYNMDAR 154 (380)
Q Consensus 96 g~~VLDlfcGvG~fsl~aA~----~g~~V~avDlnp~Aie~a~~Na~lN~l~~ri~~~~~Da~ 154 (380)
+.+||=.| |+|.++..+++ .|.+|+.++.++...+.....+... ..++.++..|+.
T Consensus 5 ~~~ilItG-asg~iG~~l~~~l~~~g~~v~~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~ 64 (246)
T PRK05653 5 GKTALVTG-ASRGIGRAIALRLAADGAKVVIYDSNEEAAEALAAELRAA--GGEARVLVFDVS 64 (246)
T ss_pred CCEEEEEC-CCcHHHHHHHHHHHHCCCEEEEEeCChhHHHHHHHHHHhc--CCceEEEEccCC
Confidence 45677555 57888877654 4779999999988766554444322 234677778874
No 495
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=20.02 E-value=1e+02 Score=29.85 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=20.1
Q ss_pred CCcchhHHHHh------hcCCEEEEEeCCHHHH
Q 046527 104 AGIGPFAIPAA------QKGCIVFANDLNPDSV 130 (380)
Q Consensus 104 cGvG~fsl~aA------~~g~~V~avDlnp~Ai 130 (380)
.|+|.-++.++ +.|.+|++||.+|+-.
T Consensus 11 GGvG~TTltAnLA~aL~~~G~~VlaID~dpqN~ 43 (243)
T PF06564_consen 11 GGVGKTTLTANLAWALARLGESVLAIDLDPQNL 43 (243)
T ss_pred CCCCHHHHHHHHHHHHHHCCCcEEEEeCCcHHH
Confidence 47777666544 4578999999999654
Done!