BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046528
(289 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 83.6 bits (205), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 101/225 (44%), Gaps = 9/225 (4%)
Query: 58 QGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVR 117
+ LY+GL L + +++ +G+Y+ KQ E+ + L AG+ G A V
Sbjct: 64 RSLYNGLVAGLQRQMSFASVRIGLYDSVKQ-FYTKGSEHAGIGSRLLAGSTTGALAVAVA 122
Query: 118 VPTEVVKQRLQTG-------QYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAIQF 170
PT+VVK R Q +Y S +A + IA +EG +GL+ G + R+ + +
Sbjct: 123 QPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAEL 182
Query: 171 CIYEQLRISYKAAARRDLNDPENXXXXXXXXXXXXXXXXPLDVIKTRLMVQGSANQYKGI 230
Y+ ++ + A + P + P+DV+KTR M + QY
Sbjct: 183 VTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYM-NSALGQYHSA 241
Query: 231 FDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRML 275
C T++R+EGP A KG P + +G + F E+ KR L
Sbjct: 242 GHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRAL 286
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 37/130 (28%), Positives = 59/130 (45%), Gaps = 3/130 (2%)
Query: 57 LQGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLV 116
++GL+ G + N+A + + Y+ K LL+ H T+ GF +++
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVI 219
Query: 117 RVPTEVVKQRLQT---GQYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAIQFCIY 173
P +VVK R GQY SA + KEG + Y G+ LR ++ + F Y
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTY 279
Query: 174 EQLRISYKAA 183
EQL+ + AA
Sbjct: 280 EQLKRALMAA 289
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 59/158 (37%), Gaps = 17/158 (10%)
Query: 113 ASLVRVPTEVVKQRLQ-------------TGQYASAPDAVRLIASKEGFKGLYAGYGSFL 159
A L+ P + K RLQ + QY + + EG + LY G + L
Sbjct: 15 ADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGL 74
Query: 160 LRDLPFDAIQFCIYEQLRISYKAAARRDLNDPENXXXXXXXXXXXXXXXXPLDVIKTRLM 219
R + F +++ +Y+ ++ Y + P DV+K R
Sbjct: 75 QRQMSFASVRIGLYDSVKQFYTKGSEHA-GIGSRLLAGSTTGALAVAVAQPTDVVKVRFQ 133
Query: 220 VQ---GSANQYKGIFDCVQTIVREEGPPALLKGIGPRV 254
Q G +Y+ + +TI REEG L KG P V
Sbjct: 134 AQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNV 171
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 58.2 bits (139), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 94/243 (38%), Gaps = 34/243 (13%)
Query: 58 QGLYSGLAGNLAGVL---PASALFVGVYEPTKQKLLQIFPENLSA----AAHLTAGAIGG 110
QG S GNLA V+ P AL + KQ L + A +L +G G
Sbjct: 64 QGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAG 123
Query: 111 FAASLVRVPTEVVKQRLQTG--------QYASAPDAVRLIASKEGFKGLYAGYGSFLLRD 162
+ P + + RL ++ + + I +G +GLY G+ +
Sbjct: 124 ATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGI 183
Query: 163 LPFDAIQFCIYEQLRISYKAAARRDLNDPENXXXXXXXXXXXXXXXX------PLDVIKT 216
+ + A F +Y+ A+ L DP+N P D ++
Sbjct: 184 IIYRAAYFGVYD--------TAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRR 235
Query: 217 RLMVQ----GSANQYKGIFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLERTK 272
R+M+Q G+ Y G DC + I ++EGP A KG V+ G+GG+ + + K
Sbjct: 236 RMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVL-RGMGGAFVLVLYDEIK 294
Query: 273 RML 275
+ +
Sbjct: 295 KFV 297
Score = 48.5 bits (114), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 78/195 (40%), Gaps = 21/195 (10%)
Query: 109 GGFAASLVRV---PTEVVKQRLQT----------GQYASAPDAVRLIASKEGFKGLYAGY 155
GG AA++ + P E VK LQ QY D V I ++GF + G
Sbjct: 14 GGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN 73
Query: 156 GSFLLRDLPFDAIQFCIYEQLRISYKAAARRDLNDPE----NXXXXXXXXXXXXXXXXPL 211
+ ++R P A+ F ++ + + R N PL
Sbjct: 74 LANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 133
Query: 212 DVIKTRLMV---QGSAN-QYKGIFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGV 267
D +TRL +G+A ++ G+ +C+ I + +G L +G V I I + +FGV
Sbjct: 134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGV 193
Query: 268 LERTKRMLAQRRPVH 282
+ K ML + VH
Sbjct: 194 YDTAKGMLPDPKNVH 208
Score = 44.7 bits (104), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 11/129 (8%)
Query: 57 LQGLYSGLAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLV 116
L+GLY G ++ G++ A + GVY+ K L P+N+ A LV
Sbjct: 169 LRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVSWMIAQTVTAVAGLV 226
Query: 117 RVPTEVVKQR--LQTGQ------YASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAI 168
P + V++R +Q+G+ Y D R IA EG K + G S +LR + A
Sbjct: 227 SYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG-GAF 285
Query: 169 QFCIYEQLR 177
+Y++++
Sbjct: 286 VLVLYDEIK 294
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 29.6 bits (65), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 64 LAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVRVPTEVV 123
LA + V+P ++ +Y +KL ++ ++L+ A L IG VR
Sbjct: 164 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN-----VRTVRAFG 218
Query: 124 KQRLQTGQYASAPDAVRLIASKEGF 148
K+ + +YAS D V +A KE F
Sbjct: 219 KEMTEIEKYASKVDHVMQLARKEAF 243
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 29.3 bits (64), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 5/85 (5%)
Query: 64 LAGNLAGVLPASALFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVRVPTEVV 123
LA + V+P ++ +Y +KL ++ ++L+ A L IG VR
Sbjct: 195 LATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGN-----VRTVRAFG 249
Query: 124 KQRLQTGQYASAPDAVRLIASKEGF 148
K+ + +YAS D V +A KE F
Sbjct: 250 KEMTEIEKYASKVDHVMQLARKEAF 274
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,013,744
Number of Sequences: 62578
Number of extensions: 250063
Number of successful extensions: 644
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 626
Number of HSP's gapped (non-prelim): 12
length of query: 289
length of database: 14,973,337
effective HSP length: 98
effective length of query: 191
effective length of database: 8,840,693
effective search space: 1688572363
effective search space used: 1688572363
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)