Query 046528
Match_columns 289
No_of_seqs 170 out of 1851
Neff 9.5
Searched_HMMs 29240
Date Mon Mar 25 23:00:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.2E-51 4E-56 359.1 18.6 248 31-280 3-291 (303)
2 1okc_A ADP, ATP carrier protei 100.0 1.5E-49 5.3E-54 344.9 25.9 246 27-275 5-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.9E-35 6.6E-40 256.2 19.3 180 98-277 6-203 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.8E-35 9.7E-40 255.8 16.5 177 102-279 4-196 (303)
5 3tgu_G UQCRQ, mitochondrial ub 64.9 11 0.00038 24.9 4.5 43 241-283 32-74 (81)
6 1pp9_G Ubiquinol-cytochrome C 48.3 22 0.00076 23.4 3.8 42 241-282 32-73 (81)
7 1pp9_G Ubiquinol-cytochrome C 29.2 96 0.0033 20.3 4.5 38 146-183 32-69 (81)
8 3tgu_G UQCRQ, mitochondrial ub 25.5 58 0.002 21.4 2.9 36 147-182 33-68 (81)
9 3f2e_A SIRV coat protein; four 20.1 44 0.0015 21.6 1.4 33 225-257 6-42 (100)
10 3vjj_A P9-1; 3.00A {Rice black 12.3 1.9E+02 0.0065 23.8 3.6 36 111-148 273-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=1.2e-51 Score=359.08 Aligned_cols=248 Identities=30% Similarity=0.454 Sum_probs=224.8
Q ss_pred HHHHHHHHHHHHHHhhcCchHHHHHHHH----------------------------------hhccChhhhhhchhhhhH
Q 046528 31 EGVIAGGTAGVVVETALYPIDTIKTRLQ----------------------------------GLYSGLAGNLAGVLPASA 76 (289)
Q Consensus 31 ~~~~~g~~a~~~~~~~~~Pld~vk~~~Q----------------------------------~ly~G~~~~~~~~~~~~~ 76 (289)
.++++|++|++++.+++||||++|+|+| +||||+.+++++.++.++
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 3689999999999999999999999987 689999999999999999
Q ss_pred HHHHHHHHHHHHHhhhCCCCcchHHHHHHHHHHHHHHhhhhccHHHHHHHHHcc-------CCCCHHHHHHHHHHhhhhh
Q 046528 77 LFVGVYEPTKQKLLQIFPENLSAAAHLTAGAIGGFAASLVRVPTEVVKQRLQTG-------QYASAPDAVRLIASKEGFK 149 (289)
Q Consensus 77 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~-------~~~~~~~~~~~i~~~~G~~ 149 (289)
++|.+|+.+++.+.+... ..+....+++|++||+++.++++|+|++|+|+|.+ .|.+.++++++|+++||++
T Consensus 83 i~f~~ye~~k~~~~~~~~-~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~ 161 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSE-HAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIR 161 (303)
T ss_dssp HTTTHHHHHHHHHSCCCS-SCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHhcCCc-CCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChh
Confidence 999999999998865422 35678899999999999999999999999999985 4689999999999999999
Q ss_pred hcccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhhcccHHHHHHHHHhcCCCCCCCC
Q 046528 150 GLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKAAARRDLNDPENAIIGAFAGAITGAITTPLDVIKTRLMVQGSANQYKG 229 (289)
Q Consensus 150 ~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~~~~~~~ 229 (289)
|||||+.+++++.++..+++|.+||.+++.+........+....+++|++||++++++++|+|+||+|+|++.. ..|.+
T Consensus 162 glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvktrlq~~~~-~~y~~ 240 (303)
T 2lck_A 162 GLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSAL-GQYHS 240 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCS-SSCCS
T ss_pred hhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhccc-cccCC
Confidence 99999999999999999999999999998775433333445678999999999999999999999999999864 46999
Q ss_pred HHHHHHHHHHhcChhhhccChhHHHHHHhhhHHHHHHHHHHHHHHHhccCC
Q 046528 230 IFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQRRP 280 (289)
Q Consensus 230 ~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~~ 280 (289)
+++|+++++++||++|||||+.++++|.+|.++++|.+||.+++.+.+..+
T Consensus 241 ~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~~~~ 291 (303)
T 2lck_A 241 AGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQ 291 (303)
T ss_dssp HHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999999988765544
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.5e-49 Score=344.85 Aligned_cols=246 Identities=24% Similarity=0.440 Sum_probs=215.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCchHHHHHHHH-------------------------------hhccChhhhhhchhhhh
Q 046528 27 RILFEGVIAGGTAGVVVETALYPIDTIKTRLQ-------------------------------GLYSGLAGNLAGVLPAS 75 (289)
Q Consensus 27 ~~~~~~~~~g~~a~~~~~~~~~Pld~vk~~~Q-------------------------------~ly~G~~~~~~~~~~~~ 75 (289)
.+.++++++|++|++++.+++||||++|+|+| +||||+.+++++.++.+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~ 84 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQ 84 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHH
Confidence 35678999999999999999999999999999 89999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhCCCC----cchHHHHHHHHHHHHHHhhhhccHHHHHHHHHcc--------CCCCHHHHHHHHH
Q 046528 76 ALFVGVYEPTKQKLLQIFPEN----LSAAAHLTAGAIGGFAASLVRVPTEVVKQRLQTG--------QYASAPDAVRLIA 143 (289)
Q Consensus 76 ~~~~~~y~~~~~~~~~~~~~~----~~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~--------~~~~~~~~~~~i~ 143 (289)
+++|.+|+.+++.+.+..... ......+++|++||+++.++++|+|+||+|+|.+ .|.+.++++++|+
T Consensus 85 ~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~ 164 (297)
T 1okc_A 85 ALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164 (297)
T ss_dssp HHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHH
Confidence 999999999999654332221 1346789999999999999999999999999975 3679999999999
Q ss_pred HhhhhhhcccchHHHHHhhhhhhhHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhhcccHHHHHHHHHhcCC
Q 046528 144 SKEGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKAAARRDLNDPENAIIGAFAGAITGAITTPLDVIKTRLMVQGS 223 (289)
Q Consensus 144 ~~~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~ 223 (289)
++||++|||||+.+++++.++..+++|.+||.+++.+.. ..+.+....+++|.+|+++++++++|+|+||+|+|++..
T Consensus 165 ~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~--~~~~~~~~~~~~g~~ag~~a~~~t~P~dvvktr~q~~~~ 242 (297)
T 1okc_A 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD--PKNVHIIVSWMIAQTVTAVAGLVSYPFDTVRRRMMMQSG 242 (297)
T ss_dssp HHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG--GGCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred HhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc--CCCccHHHHHHHHHHHHHHHHHhcChHHHHHHHHhhcCC
Confidence 999999999999999999999999999999999986643 223445677889999999999999999999999998753
Q ss_pred ----CCCCCCHHHHHHHHHHhcChhhhccChhHHHHHHhhhHHHHHHHHHHHHHHH
Q 046528 224 ----ANQYKGIFDCVQTIVREEGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRML 275 (289)
Q Consensus 224 ----~~~~~~~~~~~~~i~~~~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~~~~l 275 (289)
...|.++++|+++++++||++|||||+.++++|. +.+++.|.+||.+++.+
T Consensus 243 ~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye~~k~~l 297 (297)
T 1okc_A 243 RKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYDEIKKFV 297 (297)
T ss_dssp CCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHHTC----
T ss_pred CCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHHHHHhhC
Confidence 2368999999999999999999999999999995 57889999999998753
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.9e-35 Score=256.16 Aligned_cols=180 Identities=27% Similarity=0.407 Sum_probs=159.8
Q ss_pred chHHHHHHHHHHHHHHhhhhccHHHHHHHHHcc----------CCCCHHHHHHHHHHhhhhhhcccchHHHHHhhhhhhh
Q 046528 98 SAAAHLTAGAIGGFAASLVRVPTEVVKQRLQTG----------QYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDA 167 (289)
Q Consensus 98 ~~~~~~~~g~~a~~~~~~i~~P~d~ik~r~q~~----------~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~ 167 (289)
+.+..+++|++||+++.++++|+|++|+|+|.+ .|++.++++++++++||++|||||+.+++++.++..+
T Consensus 6 ~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 85 (297)
T 1okc_A 6 SFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQA 85 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHH
Confidence 467789999999999999999999999999975 4689999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCCC----ChhHHHHHHHHHHHHhhhcccHHHHHHHHHhcCC----CCCCCCHHHHHHHHHH
Q 046528 168 IQFCIYEQLRISYKAAARRDLN----DPENAIIGAFAGAITGAITTPLDVIKTRLMVQGS----ANQYKGIFDCVQTIVR 239 (289)
Q Consensus 168 ~~~~~~~~~~~~l~~~~~~~~~----~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~----~~~~~~~~~~~~~i~~ 239 (289)
++|.+||.+++.+........+ ....+++|++|+++++++++|+|+||+|+|++.. ...|.+++++++++++
T Consensus 86 ~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~ 165 (297)
T 1okc_A 86 LNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFK 165 (297)
T ss_dssp HHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHH
Confidence 9999999999854332111111 2357889999999999999999999999999853 3468999999999999
Q ss_pred hcChhhhccChhHHHHHHhhhHHHHHHHHHHHHHHHhc
Q 046528 240 EEGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQ 277 (289)
Q Consensus 240 ~~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~ 277 (289)
+||++|||||+.++++|.+|.+++.|.+||.+++.+.+
T Consensus 166 ~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~ 203 (297)
T 1okc_A 166 SDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPD 203 (297)
T ss_dssp HHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCG
T ss_pred hccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999997643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.8e-35 Score=255.78 Aligned_cols=177 Identities=25% Similarity=0.403 Sum_probs=160.9
Q ss_pred HHHHHHHHHHHHhhhhccHHHHHHHHHcc-------------CCCCHHHHHHHHHHhhhhhhcccchHHHHHhhhhhhhH
Q 046528 102 HLTAGAIGGFAASLVRVPTEVVKQRLQTG-------------QYASAPDAVRLIASKEGFKGLYAGYGSFLLRDLPFDAI 168 (289)
Q Consensus 102 ~~~~g~~a~~~~~~i~~P~d~ik~r~q~~-------------~~~~~~~~~~~i~~~~G~~~lyrG~~~~~~~~~~~~~~ 168 (289)
.+++|++|++++.++++|+|++|+|+|.+ .|++.++++++++++||+++||||+.+++++.++..++
T Consensus 4 ~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i 83 (303)
T 2lck_A 4 KFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASV 83 (303)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHH
T ss_pred hHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHH
Confidence 58999999999999999999999999975 36789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHHHHhhhcccHHHHHHHHHhcCC---CCCCCCHHHHHHHHHHhcChhh
Q 046528 169 QFCIYEQLRISYKAAARRDLNDPENAIIGAFAGAITGAITTPLDVIKTRLMVQGS---ANQYKGIFDCVQTIVREEGPPA 245 (289)
Q Consensus 169 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~a~~~~~~~~~Pld~ik~r~q~~~~---~~~~~~~~~~~~~i~~~~G~~g 245 (289)
+|.+||.+++.+.... ...+....+++|.+||+++.++++|+|+||+|+|++.. ...|.++++++++++++||++|
T Consensus 84 ~f~~ye~~k~~~~~~~-~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 84 RIGLYDSVKQFYTKGS-EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp TTTHHHHHHHHHSCCC-SSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHhcCC-cCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999998775321 13455678999999999999999999999999999863 3478999999999999999999
Q ss_pred hccChhHHHHHHhhhHHHHHHHHHHHHHHHhccC
Q 046528 246 LLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQRR 279 (289)
Q Consensus 246 lyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~ 279 (289)
||||+.++++|.+|.+++.|.+||.+++.+.+..
T Consensus 163 lyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~ 196 (303)
T 2lck_A 163 LWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTT
T ss_pred hhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999887543
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=64.91 E-value=11 Score=24.87 Aligned_cols=43 Identities=5% Similarity=0.023 Sum_probs=33.7
Q ss_pred cChhhhccChhHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCc
Q 046528 241 EGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQRRPVHD 283 (289)
Q Consensus 241 ~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~~~~~ 283 (289)
.|+-..+|-+..+++..+|..++.+.+|++.++.-.......+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnp 74 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNP 74 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCG
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 3666777777888899999999999999999997655444433
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=48.27 E-value=22 Score=23.38 Aligned_cols=42 Identities=12% Similarity=0.206 Sum_probs=33.3
Q ss_pred cChhhhccChhHHHHHHhhhHHHHHHHHHHHHHHHhccCCCC
Q 046528 241 EGPPALLKGIGPRVMWIGIGGSIFFGVLERTKRMLAQRRPVH 282 (289)
Q Consensus 241 ~G~~glyrG~~~~~~~~~~~~~~~~~~ye~~~~~l~~~~~~~ 282 (289)
.|+...+|-+.-+++..+|..++.+.+|++.++.........
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKn 73 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKN 73 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSC
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCC
Confidence 367777888888888999999999999999999765544433
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=29.17 E-value=96 Score=20.29 Aligned_cols=38 Identities=13% Similarity=0.195 Sum_probs=29.4
Q ss_pred hhhhhcccchHHHHHhhhhhhhHHHHHHHHHHHHHHHh
Q 046528 146 EGFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKAA 183 (289)
Q Consensus 146 ~G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 183 (289)
+|+...+|-+...++..++..++.+.+|++.++.....
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~ 69 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKS 69 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHH
Confidence 45666677777778888899999999999998765543
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=25.47 E-value=58 Score=21.36 Aligned_cols=36 Identities=8% Similarity=0.174 Sum_probs=27.1
Q ss_pred hhhhcccchHHHHHhhhhhhhHHHHHHHHHHHHHHH
Q 046528 147 GFKGLYAGYGSFLLRDLPFDAIQFCIYEQLRISYKA 182 (289)
Q Consensus 147 G~~~lyrG~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 182 (289)
|+...+|-+...++..++..++.+.+|++.++....
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~ 68 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFER 68 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHH
Confidence 445556666677888888999999999998875543
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=20.13 E-value=44 Score=21.57 Aligned_cols=33 Identities=18% Similarity=0.405 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHHHhcCh----hhhccChhHHHHHH
Q 046528 225 NQYKGIFDCVQTIVREEGP----PALLKGIGPRVMWI 257 (289)
Q Consensus 225 ~~~~~~~~~~~~i~~~~G~----~glyrG~~~~~~~~ 257 (289)
+++.++-+-...++.+.|+ +..|+|+.....|.
T Consensus 6 pkftsvne~vsavltqygvtgpnraiyqgfglkvara 42 (100)
T 3f2e_A 6 PKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARA 42 (100)
T ss_dssp --CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHH
T ss_pred ccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHH
Confidence 3555666666677777776 55888888776664
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=12.30 E-value=1.9e+02 Score=23.78 Aligned_cols=36 Identities=25% Similarity=0.399 Sum_probs=26.6
Q ss_pred HHHhhhhccHHHHHHHHHccCCCCHHHHHHHHHHhhhh
Q 046528 111 FAASLVRVPTEVVKQRLQTGQYASAPDAVRLIASKEGF 148 (289)
Q Consensus 111 ~~~~~i~~P~d~ik~r~q~~~~~~~~~~~~~i~~~~G~ 148 (289)
.+.++=-+|||.+|-.+ ..--++.+.+++.+.++|+
T Consensus 273 qLaTFdnypfdllRfqL--~Slistp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQL--SSLISTPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHC--SSCCCCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHh--hhhccChHHHHHHHHhcCc
Confidence 34566689999998754 4445777888888899874
Done!