Query 046529
Match_columns 799
No_of_seqs 316 out of 2068
Neff 7.7
Searched_HMMs 46136
Date Fri Mar 29 13:02:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046529.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046529hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03159 cation/H(+) antiporte 100.0 5E-151 1E-155 1354.5 80.6 743 18-779 18-797 (832)
2 KOG1650 Predicted K+/H+-antipo 100.0 4E-123 8E-128 1096.7 53.5 730 23-779 3-767 (769)
3 PRK03562 glutathione-regulated 100.0 1.2E-43 2.6E-48 416.4 42.4 362 45-421 5-381 (621)
4 PRK10669 putative cation:proto 100.0 2.1E-43 4.6E-48 412.9 42.1 362 46-421 7-390 (558)
5 PRK03659 glutathione-regulated 100.0 1E-42 2.3E-47 408.0 42.4 361 46-421 6-378 (601)
6 COG0475 KefB Kef-type K+ trans 100.0 3.5E-42 7.6E-47 383.6 42.0 367 42-422 3-387 (397)
7 PRK05326 potassium/proton anti 100.0 3.6E-36 7.9E-41 351.7 33.8 369 42-422 3-390 (562)
8 PF00999 Na_H_Exchanger: Sodiu 100.0 9.4E-37 2E-41 341.5 -4.0 362 52-419 3-378 (380)
9 TIGR00932 2a37 transporter, mo 100.0 1.6E-31 3.4E-36 285.6 29.1 257 55-323 2-273 (273)
10 COG4651 RosB Kef-type K+ trans 100.0 1.8E-29 3.9E-34 255.5 28.6 356 50-420 11-388 (408)
11 TIGR00831 a_cpa1 Na+/H+ antipo 99.9 7.9E-24 1.7E-28 244.8 33.6 355 52-419 5-408 (525)
12 TIGR00844 c_cpa1 na(+)/h(+) an 99.9 2E-22 4.3E-27 233.9 35.8 330 54-391 23-386 (810)
13 COG0025 NhaP NhaP-type Na+/H+ 99.9 9.3E-21 2E-25 213.4 35.1 367 45-420 6-407 (429)
14 TIGR00840 b_cpa1 sodium/hydrog 99.9 2.8E-19 6.1E-24 206.9 32.6 354 55-420 19-417 (559)
15 COG3263 NhaP-type Na+/H+ and K 99.9 1.3E-19 2.8E-24 192.7 25.5 360 43-417 5-383 (574)
16 PRK14853 nhaA pH-dependent sod 99.8 1.8E-16 3.8E-21 174.3 30.9 302 87-417 62-393 (423)
17 TIGR00773 NhaA Na+/H+ antiport 99.6 3.1E-13 6.6E-18 146.2 24.6 270 87-388 52-344 (373)
18 PRK11175 universal stress prot 99.6 1.3E-13 2.9E-18 149.6 19.6 280 442-775 4-299 (305)
19 KOG1965 Sodium/hydrogen exchan 99.6 1.8E-13 3.9E-18 153.0 20.7 370 42-421 34-456 (575)
20 KOG4505 Na+/H+ antiporter [Ino 99.4 4.7E-11 1E-15 123.8 22.2 292 85-387 68-382 (467)
21 PRK14856 nhaA pH-dependent sod 99.4 1.1E-10 2.5E-15 128.2 23.7 287 86-406 67-418 (438)
22 PRK09560 nhaA pH-dependent sod 99.3 6.2E-10 1.3E-14 120.8 24.4 269 88-388 60-353 (389)
23 cd01988 Na_H_Antiporter_C The 99.3 3.6E-11 7.8E-16 113.2 12.7 131 443-598 1-131 (132)
24 PRK14854 nhaA pH-dependent sod 99.3 1.5E-09 3.3E-14 117.1 25.1 272 88-389 57-349 (383)
25 PRK09561 nhaA pH-dependent sod 99.2 1.4E-09 3.1E-14 117.7 23.8 269 88-388 60-351 (388)
26 PRK14855 nhaA pH-dependent sod 99.2 2.1E-09 4.5E-14 117.9 24.2 265 88-389 64-384 (423)
27 PF06965 Na_H_antiport_1: Na+/ 99.0 1.5E-09 3.1E-14 117.7 10.1 274 87-390 55-353 (378)
28 COG3004 NhaA Na+/H+ antiporter 99.0 1.5E-07 3.1E-12 98.2 22.7 264 88-389 62-355 (390)
29 KOG1966 Sodium/hydrogen exchan 98.9 8.4E-10 1.8E-14 123.2 4.9 311 99-421 109-450 (670)
30 PRK15456 universal stress prot 98.7 6.9E-08 1.5E-12 92.6 10.4 136 442-598 3-141 (142)
31 cd01989 STK_N The N-terminal d 98.7 8.8E-08 1.9E-12 92.1 10.8 143 443-602 1-146 (146)
32 cd01987 USP_OKCHK USP domain i 98.6 2.4E-07 5.2E-12 86.5 11.5 122 443-598 1-123 (124)
33 PRK15005 universal stress prot 98.6 2.3E-07 4.9E-12 89.0 11.0 138 442-598 3-143 (144)
34 PF00582 Usp: Universal stress 98.6 1.8E-07 4E-12 87.6 8.6 134 442-598 3-139 (140)
35 PRK09982 universal stress prot 98.5 5.5E-07 1.2E-11 86.5 9.1 134 442-598 4-137 (142)
36 PRK15118 universal stress glob 98.4 1.5E-06 3.2E-11 83.5 10.7 133 442-598 4-137 (144)
37 cd00293 USP_Like Usp: Universa 98.3 3.9E-06 8.4E-11 77.7 11.2 129 443-597 1-129 (130)
38 cd01988 Na_H_Antiporter_C The 98.3 6.4E-06 1.4E-10 77.2 11.6 130 621-775 1-132 (132)
39 PRK11175 universal stress prot 98.2 6.6E-06 1.4E-10 89.4 12.0 144 441-603 152-303 (305)
40 PRK10116 universal stress prot 98.2 1.4E-05 3E-10 76.4 11.1 135 442-599 4-138 (142)
41 cd01989 STK_N The N-terminal d 98.2 2.3E-05 5E-10 75.2 12.2 137 621-776 1-145 (146)
42 PF00582 Usp: Universal stress 98.1 1.3E-05 2.9E-10 74.9 10.2 131 620-774 3-139 (140)
43 PRK12460 2-keto-3-deoxyglucona 98.1 0.00051 1.1E-08 73.2 21.1 254 96-422 51-307 (312)
44 PRK15005 universal stress prot 98.0 6.3E-05 1.4E-09 71.9 12.7 137 620-775 3-144 (144)
45 PRK09982 universal stress prot 98.0 1.9E-05 4.2E-10 75.7 8.6 131 620-775 4-138 (142)
46 PRK10116 universal stress prot 98.0 3.8E-05 8.2E-10 73.3 9.4 131 620-775 4-138 (142)
47 PRK15118 universal stress glob 97.8 5.4E-05 1.2E-09 72.6 8.3 133 620-776 4-139 (144)
48 cd00293 USP_Like Usp: Universa 97.8 0.00022 4.8E-09 65.7 12.1 128 621-774 1-130 (130)
49 PRK15456 universal stress prot 97.8 0.00038 8.3E-09 66.5 13.3 133 620-775 3-142 (142)
50 cd01987 USP_OKCHK USP domain i 97.8 0.00025 5.4E-09 65.9 11.0 121 621-774 1-123 (124)
51 COG0589 UspA Universal stress 97.6 0.00088 1.9E-08 64.0 12.3 139 442-598 6-150 (154)
52 PF03812 KdgT: 2-keto-3-deoxyg 97.3 0.026 5.7E-07 60.1 19.7 170 96-330 51-222 (314)
53 PRK12652 putative monovalent c 97.1 0.0028 6.2E-08 69.9 11.0 39 620-658 6-46 (357)
54 PF05684 DUF819: Protein of un 97.1 0.44 9.5E-06 53.4 27.9 104 278-388 243-346 (378)
55 PF03616 Glt_symporter: Sodium 97.0 0.16 3.5E-06 56.7 24.1 92 275-372 247-344 (368)
56 TIGR00793 kdgT 2-keto-3-deoxyg 97.0 0.034 7.3E-07 58.9 16.7 255 96-421 51-312 (314)
57 COG0786 GltS Na+/glutamate sym 96.9 0.29 6.2E-06 53.8 23.6 128 257-385 225-360 (404)
58 PRK03562 glutathione-regulated 96.7 0.041 9E-07 65.8 16.8 134 255-394 9-143 (621)
59 PRK12652 putative monovalent c 96.7 0.018 4E-07 63.6 12.6 111 442-568 6-125 (357)
60 COG3493 CitS Na+/citrate sympo 96.6 0.26 5.7E-06 53.5 20.5 313 49-393 50-413 (438)
61 COG0385 Predicted Na+-dependen 96.4 1.8 3.9E-05 46.9 26.2 148 85-244 33-191 (319)
62 TIGR00932 2a37 transporter, mo 96.4 0.076 1.6E-06 56.8 15.3 133 262-400 3-137 (273)
63 PF03390 2HCT: 2-hydroxycarbox 96.3 0.86 1.9E-05 51.0 23.0 308 46-393 30-394 (414)
64 PRK03659 glutathione-regulated 96.3 0.11 2.3E-06 62.1 16.8 133 256-394 10-143 (601)
65 PRK10669 putative cation:proto 96.3 0.12 2.5E-06 61.4 17.0 136 257-398 12-148 (558)
66 COG2855 Predicted membrane pro 96.1 0.061 1.3E-06 58.0 11.9 118 267-387 29-146 (334)
67 PRK05274 2-keto-3-deoxyglucona 95.9 0.42 9.2E-06 52.2 18.0 79 98-179 55-136 (326)
68 COG0475 KefB Kef-type K+ trans 95.9 0.18 4E-06 57.0 15.8 156 255-415 10-168 (397)
69 PF13593 DUF4137: SBF-like CPA 95.7 2.2 4.7E-05 46.7 22.7 110 89-209 30-144 (313)
70 PF03601 Cons_hypoth698: Conse 95.7 0.25 5.4E-06 53.6 15.2 130 258-389 5-139 (305)
71 PF05145 AmoA: Putative ammoni 95.6 4.3 9.3E-05 44.5 24.2 128 256-390 157-287 (318)
72 PRK05326 potassium/proton anti 95.5 0.15 3.2E-06 60.5 13.6 129 257-390 12-143 (562)
73 TIGR00841 bass bile acid trans 95.4 4 8.6E-05 44.0 23.0 53 89-144 7-63 (286)
74 COG3180 AbrB Putative ammonia 95.4 5.3 0.00011 43.8 23.9 295 46-388 7-318 (352)
75 COG0589 UspA Universal stress 95.4 0.15 3.3E-06 48.3 10.9 137 621-777 7-153 (154)
76 TIGR00844 c_cpa1 na(+)/h(+) an 94.5 0.58 1.3E-05 56.5 14.3 71 306-378 74-146 (810)
77 PRK10490 sensor protein KdpD; 94.4 0.35 7.5E-06 60.6 13.1 124 439-598 248-372 (895)
78 TIGR00783 ccs citrate carrier 94.3 1.9 4E-05 47.4 16.8 119 274-393 203-327 (347)
79 PLN03159 cation/H(+) antiporte 94.3 0.66 1.4E-05 57.5 15.1 38 621-658 460-499 (832)
80 TIGR00698 conserved hypothetic 94.0 1.5 3.3E-05 48.1 15.5 126 260-388 11-144 (335)
81 PF01758 SBF: Sodium Bile acid 93.0 5.5 0.00012 40.0 16.7 106 94-210 2-110 (187)
82 TIGR00831 a_cpa1 Na+/H+ antipo 92.8 0.75 1.6E-05 54.1 11.5 117 259-381 6-125 (525)
83 TIGR00930 2a30 K-Cl cotranspor 91.9 45 0.00097 42.3 32.8 104 441-572 575-683 (953)
84 PF03956 DUF340: Membrane prot 91.7 2 4.3E-05 43.4 11.4 107 89-207 23-134 (191)
85 COG2205 KdpD Osmosensitive K+ 90.5 2.2 4.7E-05 51.3 11.7 121 439-593 246-366 (890)
86 TIGR00210 gltS sodium--glutama 90.2 37 0.0008 38.4 28.4 93 275-370 245-340 (398)
87 TIGR03136 malonate_biotin Na+- 90.2 2.6 5.6E-05 46.0 11.0 115 304-424 101-216 (399)
88 TIGR00698 conserved hypothetic 89.8 35 0.00077 37.6 26.6 51 89-145 65-116 (335)
89 TIGR03082 Gneg_AbrB_dup membra 89.0 5.6 0.00012 38.8 11.7 121 260-387 4-127 (156)
90 TIGR00832 acr3 arsenical-resis 88.5 43 0.00094 36.8 23.2 46 339-384 251-297 (328)
91 COG0025 NhaP NhaP-type Na+/H+ 87.5 3 6.6E-05 47.6 10.1 124 257-383 12-139 (429)
92 PF03977 OAD_beta: Na+-transpo 87.4 1.9 4E-05 46.5 7.6 114 305-424 66-179 (360)
93 PF03616 Glt_symporter: Sodium 85.9 4.9 0.00011 45.0 10.4 116 307-422 66-186 (368)
94 TIGR00808 malonate_madM malona 85.5 4 8.7E-05 40.9 8.2 95 49-145 17-132 (254)
95 COG0798 ACR3 Arsenite efflux p 85.1 64 0.0014 35.3 24.9 147 88-244 49-202 (342)
96 PRK03818 putative transporter; 85.0 18 0.00039 42.8 15.0 83 85-176 56-141 (552)
97 PRK10490 sensor protein KdpD; 84.9 3 6.5E-05 52.4 9.0 120 621-775 252-373 (895)
98 PF06826 Asp-Al_Ex: Predicted 84.5 40 0.00088 33.3 15.0 84 84-177 48-136 (169)
99 TIGR00946 2a69 he Auxin Efflux 83.9 16 0.00034 40.0 13.3 127 66-205 179-314 (321)
100 PF00999 Na_H_Exchanger: Sodiu 83.5 0.41 8.9E-06 53.6 0.6 112 261-376 6-123 (380)
101 PF03601 Cons_hypoth698: Conse 83.3 74 0.0016 34.7 22.5 51 89-145 59-110 (305)
102 PRK04288 antiholin-like protei 83.1 38 0.00082 35.2 14.5 110 296-418 65-174 (232)
103 TIGR03082 Gneg_AbrB_dup membra 82.5 5.4 0.00012 38.9 7.9 90 53-145 3-99 (156)
104 COG1346 LrgB Putative effector 82.3 65 0.0014 33.3 16.1 111 295-418 61-171 (230)
105 COG2985 Predicted permease [Ge 81.7 6.9 0.00015 44.4 9.1 83 93-181 62-147 (544)
106 COG2855 Predicted membrane pro 79.5 9.7 0.00021 41.5 9.1 59 79-139 271-329 (334)
107 COG3329 Predicted permease [Ge 79.4 28 0.00061 37.2 12.1 145 266-420 5-159 (372)
108 PF03547 Mem_trans: Membrane t 79.4 10 0.00022 42.5 10.0 135 278-420 9-146 (385)
109 PRK15475 oxaloacetate decarbox 79.2 3 6.4E-05 45.5 5.1 119 304-424 130-250 (433)
110 KOG2310 DNA repair exonuclease 79.1 2.5 5.5E-05 48.1 4.7 83 545-633 41-132 (646)
111 PRK15476 oxaloacetate decarbox 79.1 3 6.5E-05 45.5 5.1 119 304-424 130-250 (433)
112 PRK15477 oxaloacetate decarbox 79.0 3 6.5E-05 45.5 5.1 119 304-424 130-250 (433)
113 COG0786 GltS Na+/glutamate sym 78.7 7.2 0.00016 43.2 7.9 116 306-421 67-186 (404)
114 PRK03359 putative electron tra 78.0 7 0.00015 41.4 7.5 112 625-759 31-149 (256)
115 TIGR02432 lysidine_TilS_N tRNA 77.5 15 0.00033 36.6 9.6 37 621-657 1-37 (189)
116 COG4651 RosB Kef-type K+ trans 77.5 9.6 0.00021 40.7 8.1 132 256-395 11-145 (408)
117 PRK12342 hypothetical protein; 77.3 6.6 0.00014 41.5 7.1 33 624-657 29-61 (254)
118 PF03956 DUF340: Membrane prot 77.3 2.9 6.2E-05 42.2 4.1 50 335-384 57-106 (191)
119 PRK12460 2-keto-3-deoxyglucona 77.2 15 0.00032 39.8 9.6 74 69-145 171-245 (312)
120 COG0679 Predicted permeases [G 74.5 1.4E+02 0.0029 32.6 28.9 137 276-418 168-306 (311)
121 TIGR00659 conserved hypothetic 73.4 1.1E+02 0.0023 31.9 14.3 83 332-418 86-168 (226)
122 PF01012 ETF: Electron transfe 72.3 13 0.00029 36.2 7.4 125 630-785 15-144 (164)
123 PRK10711 hypothetical protein; 72.1 79 0.0017 32.9 13.1 108 298-418 62-169 (231)
124 TIGR00210 gltS sodium--glutama 71.0 56 0.0012 37.0 12.8 156 48-207 222-393 (398)
125 TIGR02039 CysD sulfate adenyly 70.7 14 0.00031 39.8 7.7 39 621-659 21-59 (294)
126 cd01984 AANH_like Adenine nucl 70.6 5.2 0.00011 34.3 3.6 48 543-595 35-83 (86)
127 PF01171 ATP_bind_3: PP-loop f 70.6 45 0.00097 33.1 10.9 92 621-732 1-106 (182)
128 TIGR03802 Asp_Ala_antiprt aspa 69.5 24 0.00051 42.0 9.9 89 51-145 12-114 (562)
129 TIGR01109 Na_pump_decarbB sodi 69.1 16 0.00034 39.6 7.4 115 304-424 59-179 (354)
130 PRK09903 putative transporter 68.4 50 0.0011 36.0 11.6 101 67-178 171-280 (314)
131 TIGR01625 YidE_YbjL_dupl AspT/ 68.3 40 0.00087 32.8 9.5 84 86-178 50-138 (154)
132 COG3263 NhaP-type Na+/H+ and K 67.8 43 0.00093 37.8 10.6 78 302-380 59-136 (574)
133 TIGR01625 YidE_YbjL_dupl AspT/ 64.5 20 0.00044 34.9 6.7 87 278-364 24-116 (154)
134 PRK05253 sulfate adenylyltrans 64.5 24 0.00051 38.4 7.9 39 621-659 29-67 (301)
135 COG2205 KdpD Osmosensitive K+ 64.2 34 0.00074 41.6 9.6 121 621-774 250-372 (890)
136 COG0679 Predicted permeases [G 63.4 1.1E+02 0.0024 33.3 13.0 76 67-145 166-251 (311)
137 COG2431 Predicted membrane pro 63.2 2.1E+02 0.0046 30.5 15.1 49 336-384 165-213 (297)
138 PF05145 AmoA: Putative ammoni 62.7 34 0.00073 37.5 8.8 95 48-145 155-256 (318)
139 COG5505 Predicted integral mem 62.6 2.3E+02 0.005 30.7 23.8 91 307-406 275-365 (384)
140 COG1346 LrgB Putative effector 61.6 2E+02 0.0044 29.7 14.4 84 58-145 19-117 (230)
141 cd01992 PP-ATPase N-terminal d 61.3 48 0.001 32.7 9.1 38 621-658 1-38 (185)
142 TIGR00840 b_cpa1 sodium/hydrog 60.5 2.5E+02 0.0055 33.4 16.1 75 307-383 69-152 (559)
143 COG4827 Predicted transporter 60.3 1.5E+02 0.0033 30.0 11.8 52 90-141 9-60 (239)
144 PF04172 LrgB: LrgB-like famil 59.8 2.2E+02 0.0047 29.4 14.3 107 298-417 51-157 (215)
145 PRK04125 murein hydrolase regu 59.2 1.4E+02 0.0031 28.5 11.2 28 44-71 7-34 (141)
146 PF03547 Mem_trans: Membrane t 58.6 3E+02 0.0064 30.6 22.2 67 296-363 269-335 (385)
147 PRK04972 putative transporter; 57.9 84 0.0018 37.3 11.6 54 90-145 60-116 (558)
148 cd01993 Alpha_ANH_like_II This 57.7 98 0.0021 30.3 10.6 38 621-658 1-40 (185)
149 COG3969 Predicted phosphoadeno 55.5 27 0.00059 38.0 6.2 35 621-655 29-64 (407)
150 cd01984 AANH_like Adenine nucl 54.5 14 0.00031 31.5 3.4 33 622-655 1-33 (86)
151 PRK04972 putative transporter; 53.1 91 0.002 37.0 10.8 99 275-376 410-514 (558)
152 PRK12563 sulfate adenylyltrans 53.0 31 0.00067 37.6 6.4 40 621-660 39-78 (312)
153 COG2086 FixA Electron transfer 51.8 64 0.0014 34.3 8.3 111 624-760 31-149 (260)
154 TIGR03802 Asp_Ala_antiprt aspa 50.5 1.7E+02 0.0036 34.9 12.5 88 276-365 416-510 (562)
155 COG1883 OadB Na+-transporting 49.4 4.7 0.0001 42.5 -0.5 112 306-424 82-194 (375)
156 TIGR02185 Trep_Strep conserved 48.9 2.9E+02 0.0064 27.7 13.4 85 275-360 85-185 (189)
157 PF09605 Trep_Strep: Hypotheti 47.2 3.1E+02 0.0067 27.5 14.8 126 228-359 39-181 (186)
158 COG2431 Predicted membrane pro 46.4 4E+02 0.0087 28.5 13.6 56 88-144 130-188 (297)
159 PRK10660 tilS tRNA(Ile)-lysidi 46.3 1.1E+02 0.0024 35.1 9.9 57 621-693 17-74 (436)
160 COG3748 Predicted membrane pro 46.1 4E+02 0.0087 29.0 12.9 55 292-348 212-266 (407)
161 COG3180 AbrB Putative ammonia 43.9 3.6E+02 0.0079 29.9 12.7 122 255-384 10-135 (352)
162 PRK03818 putative transporter; 43.4 2.5E+02 0.0055 33.3 12.5 82 84-174 427-513 (552)
163 PRK04288 antiholin-like protei 42.8 4.2E+02 0.009 27.7 13.9 40 103-144 80-119 (232)
164 PF03390 2HCT: 2-hydroxycarbox 42.6 5.4E+02 0.012 29.3 14.1 61 308-370 97-158 (414)
165 PF13593 DUF4137: SBF-like CPA 42.5 1.7E+02 0.0037 32.0 10.2 92 278-372 7-99 (313)
166 PRK04125 murein hydrolase regu 41.5 2.1E+02 0.0045 27.5 9.2 19 311-329 69-89 (141)
167 KOG1288 Amino acid transporter 41.1 7.2E+02 0.016 30.3 15.0 97 442-566 561-662 (945)
168 PRK01658 holin-like protein; V 39.8 2.7E+02 0.0058 26.0 9.5 28 44-71 4-31 (122)
169 TIGR00946 2a69 he Auxin Efflux 39.1 5.4E+02 0.012 27.9 25.9 136 276-418 182-319 (321)
170 PF02601 Exonuc_VII_L: Exonucl 38.7 53 0.0011 35.9 5.6 51 683-734 29-87 (319)
171 PF03812 KdgT: 2-keto-3-deoxyg 38.3 68 0.0015 34.8 6.0 74 69-145 176-250 (314)
172 KOG0573 Asparagine synthase [A 37.6 2.2E+02 0.0047 32.5 9.8 75 621-707 252-328 (520)
173 PF05684 DUF819: Protein of un 36.8 2.5E+02 0.0054 31.6 10.6 97 302-403 52-152 (378)
174 PF02040 ArsB: Arsenical pump 35.3 7.3E+02 0.016 28.4 23.3 36 168-203 117-152 (423)
175 cd01713 PAPS_reductase This do 34.6 67 0.0015 30.7 5.1 37 621-658 1-37 (173)
176 PRK01821 hypothetical protein; 34.5 3.2E+02 0.0068 26.0 9.2 26 45-70 10-35 (133)
177 PRK12933 secD preprotein trans 33.8 9E+02 0.02 29.0 14.8 55 123-179 466-522 (604)
178 TIGR01109 Na_pump_decarbB sodi 33.3 6.9E+02 0.015 27.5 14.2 100 227-330 160-266 (354)
179 KOG1965 Sodium/hydrogen exchan 33.2 82 0.0018 37.0 6.0 71 307-381 102-181 (575)
180 TIGR03136 malonate_biotin Na+- 32.1 7.6E+02 0.016 27.6 15.5 99 227-330 197-303 (399)
181 TIGR00793 kdgT 2-keto-3-deoxyg 31.5 1.5E+02 0.0032 32.1 7.2 74 69-145 176-250 (314)
182 COG0385 Predicted Na+-dependen 31.2 5.2E+02 0.011 28.3 11.4 78 308-387 41-122 (319)
183 PF03652 UPF0081: Uncharacteri 29.2 1.5E+02 0.0033 28.0 6.3 60 542-604 37-98 (135)
184 TIGR02057 PAPS_reductase phosp 29.1 3.6E+02 0.0078 27.9 9.6 38 621-661 27-64 (226)
185 TIGR00659 conserved hypothetic 28.8 6.8E+02 0.015 26.0 13.3 38 105-144 76-113 (226)
186 PF01507 PAPS_reduct: Phosphoa 27.6 1.2E+02 0.0025 29.4 5.5 34 621-658 1-34 (174)
187 KOG2575 Glucosyltransferase - 27.5 9.5E+02 0.021 27.3 12.8 144 263-426 199-351 (510)
188 COG1570 XseA Exonuclease VII, 27.3 1E+02 0.0022 35.2 5.3 49 684-733 151-204 (440)
189 KOG2722 Predicted membrane pro 26.9 1.1E+02 0.0023 34.0 5.3 67 293-365 40-107 (408)
190 PF04172 LrgB: LrgB-like famil 26.6 7.2E+02 0.016 25.6 12.3 35 108-144 69-103 (215)
191 COG0037 MesJ tRNA(Ile)-lysidin 26.5 85 0.0019 33.6 4.7 36 621-658 23-58 (298)
192 PF08659 KR: KR domain; Inter 26.4 4.5E+02 0.0098 25.8 9.5 85 625-732 4-91 (181)
193 cd01985 ETF The electron trans 26.3 3.9E+02 0.0084 26.2 9.0 26 629-655 18-43 (181)
194 KOG1650 Predicted K+/H+-antipo 26.3 1.3E+03 0.029 28.6 15.4 65 94-167 314-378 (769)
195 TIGR00832 acr3 arsenical-resis 26.1 6.3E+02 0.014 27.7 11.4 70 315-386 51-127 (328)
196 KOG2563 Permease of the major 25.5 1.1E+03 0.024 27.3 16.1 26 360-386 389-414 (480)
197 COG1380 Putative effector of m 25.1 4.4E+02 0.0095 24.8 8.3 29 43-71 4-32 (128)
198 PRK05812 secD preprotein trans 24.7 9.3E+02 0.02 28.2 12.8 55 123-179 359-414 (498)
199 PF04123 DUF373: Domain of unk 24.5 1E+03 0.022 26.5 13.2 50 194-243 262-320 (344)
200 COG2985 Predicted permease [Ge 24.0 2.8E+02 0.006 32.1 7.9 97 70-174 401-507 (544)
201 TIGR00342 thiazole biosynthesi 23.9 2.1E+02 0.0046 32.1 7.2 34 621-658 174-207 (371)
202 cd01995 ExsB ExsB is a transcr 23.0 4E+02 0.0087 25.7 8.3 32 621-656 1-32 (169)
203 KOG4050 Glutamate transporter 22.7 2.7E+02 0.0059 27.1 6.4 12 294-305 155-166 (188)
204 COG0175 CysH 3'-phosphoadenosi 22.6 3E+02 0.0065 29.2 7.7 34 621-658 41-74 (261)
205 PF03686 UPF0146: Uncharacteri 22.3 1.5E+02 0.0032 27.9 4.6 36 533-568 72-107 (127)
206 PF13194 DUF4010: Domain of un 22.2 8.6E+02 0.019 24.9 17.5 27 261-287 137-164 (211)
207 cd01712 ThiI ThiI is required 22.1 3.6E+02 0.0077 26.4 7.8 34 621-658 1-34 (177)
208 PRK09765 PTS system 2-O-a-mann 21.8 1.5E+03 0.032 27.5 18.7 39 349-387 511-550 (631)
209 PF06826 Asp-Al_Ex: Predicted 21.1 8.1E+02 0.017 24.2 11.1 87 275-365 23-116 (169)
210 TIGR00268 conserved hypothetic 21.0 1.6E+02 0.0035 31.0 5.3 33 621-657 14-46 (252)
211 COG1646 Predicted phosphate-bi 21.0 2.5E+02 0.0054 29.3 6.3 63 532-601 16-79 (240)
212 PRK00972 tetrahydromethanopter 20.5 5.7E+02 0.012 27.0 8.7 128 22-165 45-176 (292)
No 1
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=100.00 E-value=4.8e-151 Score=1354.46 Aligned_cols=743 Identities=41% Similarity=0.752 Sum_probs=669.0
Q ss_pred ccccccccccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---e---------------
Q 046529 18 ACYYANSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---M--------------- 79 (799)
Q Consensus 18 ~c~~~~~~~~~g~~~~~~p~~~~~~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l--------------- 79 (799)
+|+.+++.+|+|+|+|+||++| ++|++++|+++++++++++++++||+|||+++|||++ +
T Consensus 18 ~c~~~~~~~s~g~~~g~~pl~~--~l~~~llql~lil~~a~l~~~ll~rl~~P~ivgeIlaGIlLGPs~lg~i~~~~~~~ 95 (832)
T PLN03159 18 VCYAPMMITTNGIWQGDNPLDF--SLPLFILQLTLVVVTTRLLVFILKPFRQPRVISEILGGVILGPSVLGQSEVFANTI 95 (832)
T ss_pred ccccCCCccCCcccccCCcccc--hHHHHHHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHhcCHhhhCcChhhhhhc
Confidence 5997667899999999999999 9999999999999999999999999999999999999 3
Q ss_pred ccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcC-cchhhhhhHHHH
Q 046529 80 FPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGE-SQEFITQGGYMF 158 (799)
Q Consensus 80 ~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~-~~~~~~~~~~l~ 158 (799)
||.++.+.+++++++|++|+||++|+|+|++.+|+++ |+++.+|+.++++|+++|++++++++.. .... ....+++
T Consensus 96 fp~~~~~~l~~la~lGlillmFliGLE~Dl~~lr~~~--k~a~~ia~~~~ilpf~lg~~~~~~l~~~~~~~~-~~~~~l~ 172 (832)
T PLN03159 96 FPLRSVMVLETMANLGLLYFLFLVGVEMDISVIRRTG--KKALAIAIAGMALPFCIGLAFSFIFHQVSRNVH-QGTFILF 172 (832)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc-hhHHHHH
Confidence 3334456899999999999999999999999999999 9999999999999999999888877431 1111 1346789
Q ss_pred HHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC---C--hHHHHHHHHHHHHHHHHHHH
Q 046529 159 CAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSN---P--SQYYEVLSTVGFILICVVVV 233 (799)
Q Consensus 159 l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~---~--~~~~~~~~~~~~~~~~~~v~ 233 (799)
+|+++|.||+|+++++|+|+|+++++.||+++++++++|+++|++++++.++.. + ..+|.++..++|++++++++
T Consensus 173 ~g~alS~Ts~pVv~riL~Elkll~s~~GrlaLsaavv~Dl~~~ilLav~~~l~~~~~~~~~~l~~~l~~~~f~~~~~~v~ 252 (832)
T PLN03159 173 LGVALSVTAFPVLARILAEIKLINTELGRIAMSAALVNDMCAWILLALAIALAENDSTSLASLWVLLSSVAFVLFCFYVV 252 (832)
T ss_pred HHHHHHHhhHHHHHHHHHHcCcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998876643 1 45577777788888999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhH
Q 046529 234 RPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPG 313 (799)
Q Consensus 234 r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPl 313 (799)
||++.|+.|+++++ ++.++.++.+++++++++++++|.+|+|+++|||++|+++|+ +|+++++.+|++++++++|+|+
T Consensus 253 r~~~~~~~r~~~~~-~~~~e~~v~~il~~vl~~a~lae~~Gl~~ilGAFlaGl~lp~-~~~~~~l~ekle~~~~~lflPl 330 (832)
T PLN03159 253 RPGIWWIIRRTPEG-ETFSEFYICLILTGVMISGFITDAIGTHSVFGAFVFGLVIPN-GPLGVTLIEKLEDFVSGLLLPL 330 (832)
T ss_pred HHHHHHHHHhCcCC-CCcccchhHHHHHHHHHHHHHHHHhCccHHHHHHHHhhccCC-cchHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988 888999999999999999999999999999999999999995 7899999999999999999999
Q ss_pred HHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC
Q 046529 314 FFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLV 393 (799)
Q Consensus 314 FF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~ 393 (799)
||+++|+++|+..+.+...|..+++++++++++|+++++++++++|+|++|++.+|++||+||+++++++++|++.|+++
T Consensus 331 FFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~~eal~lG~lm~~kG~~~Lii~~ig~~~gvi~ 410 (832)
T PLN03159 331 FFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPFREGITLGFLMNTKGLVEMIVLNVGRDQEVLD 410 (832)
T ss_pred HHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhcccHHHHHHHHHHHhcCccC
Confidence 99999999999888665456667788888999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCccceEEEEeecCCChHHHHHHHHhhccCCCCCce
Q 046529 394 DEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIH 473 (799)
Q Consensus 394 ~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~~~~~~~r~i~~~~~~~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~ 473 (799)
++.|++++++++++|++++|+++++|+|+||+..|++|++|+.++++|+|||+|+|+++|++++++|+|++++++++|++
T Consensus 411 ~~~f~~lVl~avl~T~i~~Plv~~ly~p~rk~~~~~~r~i~~~~~~~elriL~cv~~~~~v~~li~Lle~s~~t~~sp~~ 490 (832)
T PLN03159 411 DESFAVMVLVAVAMTALITPVVTVVYRPARRLVGYKRRTIQRSKHDAELRMLVCVHTPRNVPTIINLLEASHPTKRSPIC 490 (832)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhCHHhhhccccccccccCCCCCceeEEEEeccCCcHHHHHHHHHhcCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeeccCCcchhhhhccCCCCCCCCCCCC---CcchhhHHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHH
Q 046529 474 VFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCP---MQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICC 550 (799)
Q Consensus 474 v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~ 550 (799)
+|++||||+++|++|++++|+.+ ++... ....++|+++++|++|++++ ++|+|+++|++|||++||+|||+
T Consensus 491 vy~lhLveL~~r~~~~l~~h~~~-----~~~~~~~~~~~~~~~~i~~af~~~~~~~-~~v~v~~~t~vs~~~~mh~dIc~ 564 (832)
T PLN03159 491 IYVLHLVELTGRASAMLIVHNTR-----KSGRPALNRTQAQSDHIINAFENYEQHA-GCVSVQPLTAISPYSTMHEDVCN 564 (832)
T ss_pred EEEEEEEeecCCCccceeeeecc-----cccccccccccccccHHHHHHHHHHhhc-CceEEEEEEEEeCcccHHHHHHH
Confidence 99999999999999999999862 11110 12345799999999999863 58999999999999999999999
Q ss_pred HHHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccCCCceEEEEcCCCCCCcccccccccccccceEEEeccCC
Q 046529 551 LAEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGG 629 (799)
Q Consensus 551 ~A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~~~I~v~f~GG 629 (799)
+|+||++|+||+||||+|+.||++++.+ .+|.+|+|||++||||||||||||.++..+. +.....+ ||+++|+||
T Consensus 565 ~A~d~~~slIilpfhk~~~~dg~~~~~~~~~r~~n~~VL~~ApCsVgIlVDRg~~~~~~~-~~~~~~~---~v~~~F~GG 640 (832)
T PLN03159 565 LAEDKRVSLIIIPFHKQQTVDGGMEATNPAFRGVNQNVLANAPCSVGILVDRGLSGATRL-ASNQVSH---HVAVLFFGG 640 (832)
T ss_pred HHHhcCCCEEEECCCCccCCCCCccccCchHHHHHHHHHccCCCCEEEEEeCCCCccccc-cccccce---eEEEEecCC
Confidence 9999999999999999999999999888 9999999999999999999999997632222 2233344 999999999
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCcccc-c---cCC---cc-cc-ccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 630 PDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLH-Q---KHN---SE-VA-RCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 630 ~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~-~---~~~---~~-~~-~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
|||||||+||+|||+||++++||+||++.++..+... . .++ .. .. .+.|+++||++++|||.++..++++.
T Consensus 641 ~DDREALa~a~rma~~p~v~lTVirf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~D~~~~~ef~~~~~~~~~v~ 720 (832)
T PLN03159 641 PDDREALAYAWRMSEHPGITLTVMRFIPGEDAAPTASQPASSPSDPRIPTVETDGKKERQLDEEYINEFRARNAGNESIV 720 (832)
T ss_pred cchHHHHHHHHHHhcCCCeEEEEEEEEcccccccccccccccccccccccccccchhHHHHHHHHHHHHHHhcCCCCceE
Confidence 9999999999999999999999999997543311000 0 011 11 11 26688999999999999998889999
Q ss_pred EEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEeeecc
Q 046529 701 YIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYIS 779 (799)
Q Consensus 701 y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq~~~ 779 (799)
|+||+|+||+||+++||+|.++|||+||||+|+.+|++|+||+ ||+||||||+|||+|||+||++++||||||||..
T Consensus 721 y~E~~V~~~~e~~~~l~~~~~~ydL~iVGr~~~~~~~~~~gL~--~w~e~pELG~iGD~LaS~d~~~~~SVLVvQQ~~~ 797 (832)
T PLN03159 721 YTEKVVSNGEETVAAIRSMDSAHDLFIVGRGQGMISPLTAGLT--DWSECPELGAIGDLLASSDFAATVSVLVVQQYVG 797 (832)
T ss_pred EEEEecCCHHHHHHHHHHhhccCcEEEEecCCCCCcchhcccc--ccccCCccchhhhHHhcCCCCCceeEEEEEeecc
Confidence 9999999999999999999999999999999987899999999 9999999999999999999999999999999984
No 2
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.7e-123 Score=1096.70 Aligned_cols=730 Identities=37% Similarity=0.654 Sum_probs=662.1
Q ss_pred cccccccccccCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee------------------eccCCC
Q 046529 23 NSSGTIRIWRNHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE------------------MFPYKS 84 (799)
Q Consensus 23 ~~~~~~g~~~~~~p~~~~~~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila------------------l~p~~~ 84 (799)
++.++.|+|.|+||++| ++|++++|+++++++++++++++||+|||++++||++ +||.++
T Consensus 3 ~~~~~~g~~~~~~~~~~--~lpl~~lq~~~i~~~~~~~~~~l~pl~qp~~~s~il~Gi~lgps~~g~~~~~~~~~f~~~s 80 (769)
T KOG1650|consen 3 VKATSNGVFPGVNPLKY--ALPLLLLQIILIIVLSRLLHILLKPLGQPRVISEILAGIILGPSLLGRIPSYMNTIFPKSS 80 (769)
T ss_pred CccccCCcccCCCcccc--ccHHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhcchHhhccChhhhhcccccch
Confidence 45588999999999999 9999999999999999999999999999999999999 556677
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc---Ccchhh--hhhHHHHH
Q 046529 85 VMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG---ESQEFI--TQGGYMFC 159 (799)
Q Consensus 85 ~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~---~~~~~~--~~~~~l~l 159 (799)
...+++++++|+.+++|+.|+|+|.+.+++++ |++..+|+.++++|+..|.++...+.. ...+.. ...+..++
T Consensus 81 ~~~l~~~~~lg~~~f~Fl~gl~~d~~~i~~~~--kka~~I~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (769)
T KOG1650|consen 81 MIVLELLANLGFLFFLFLMGLEIDLRVIRRTG--KKAIVIAIASVVLPFGLGFGLAFLLSDTKADKEDGALFLPFEILFI 158 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHhhccC--ceeEEEEEEEeehhhHhhhhhhhhccccccccccccccccHHHHHH
Confidence 89999999999999999999999999999999 999999999999999999988888753 111110 11267888
Q ss_pred HHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC-----C-hHHHHHHHHHHHHHHHHHHH
Q 046529 160 AVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSN-----P-SQYYEVLSTVGFILICVVVV 233 (799)
Q Consensus 160 ~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~v~ 233 (799)
..+++.|+||+++++|.|+|++++++||+|+++++++|+.+|.++++..+... + ...|.++..+++++++.+++
T Consensus 159 ~~~~s~tsfpv~~~iL~eLkll~se~Grla~saa~v~dv~~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 238 (769)
T KOG1650|consen 159 LSAQSITSFPVLARILAELKLLNSELGRLALSAAVVNDVAGWILLALALAFSSELKLSPLRSVWDLVLVIGFVLFLFFVV 238 (769)
T ss_pred HHHhhcchhHHHHHHHHHhhchhchhhhhhhhhhhhhhHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHHHHHheeeeh
Confidence 89999999999999999999999999999999999999999998888877754 1 35788888899999999999
Q ss_pred HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhc-hhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhh
Q 046529 234 RPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCG-AHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLP 312 (799)
Q Consensus 234 r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G-~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lP 312 (799)
||++.|+.||+||+ ++.++.++...++.+++++++++.++ .|+++|||+.|+++|+++|+++++.+|+|++.+++|+|
T Consensus 239 ~p~~~wi~kr~pe~-~~~~~~~~~~~l~~vl~~~~~~~~~~~i~~~~Gaf~~Gl~iP~~~p~g~~L~ekle~~~~~~llP 317 (769)
T KOG1650|consen 239 RPLMKWIIKRTPEG-KPVSDAYICVTLLGVLASAFLTDLIGGIHSIFGAFILGLAIPHGPPLGSALIEKLEDLVSGLLLP 317 (769)
T ss_pred hhhHHHHhhcCCCC-CccccceehhhHHHHHHHHHHHHHhccccccchhheEEEecCCCCchhHHHHHHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999999999999 89999999999999999999999999999999999999
Q ss_pred HHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCC
Q 046529 313 GFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDL 392 (799)
Q Consensus 313 lFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii 392 (799)
+||+.+|+++|+..+.. |......+...+++|++++..++.++|+|++|++.+|++||+||.+|++.++.+.+.|++
T Consensus 318 l~~~~~G~k~di~~i~~---~~~~~~~i~~~~~~K~l~t~~~sl~~k~p~~~~l~l~~lm~~kgl~el~~~~~~~~~~~~ 394 (769)
T KOG1650|consen 318 LYFAISGLKTDISRINK---WGALIRTILIFGAVKLLSTLGTSLYCKLPLRDSLALGLLMSTKGLVELIVLNTGLDRKIL 394 (769)
T ss_pred HHHHhhccceeHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHhhhHHHHHHHHHHhhcCCc
Confidence 99999999999998875 777888888999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHhhhhhhhhhcccccccccCCCCccceEEEEeecCCChHHHHHHHHhhccCCCCCc
Q 046529 393 VDEAFPPTIFALFVMTCVIEPILAATYKATKQFMNYKCRTIQRTKEKAEFRIMACIHSTRNIAGMINLLQVSNATNQSAI 472 (799)
Q Consensus 393 ~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~~~~~~~r~i~~~~~~~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~ 472 (799)
+++.|++++++++++|.+++|+++.+|+|.|++..|++|++|+.++++++|+|+|+|++++++++++++|++.+++++|+
T Consensus 395 ~~~~f~~~vl~alv~t~I~~~~l~~~y~p~~~~~~y~~~~i~~~~~~~~Lril~cl~~~~~is~~i~~le~~~~~~~~p~ 474 (769)
T KOG1650|consen 395 SDEGFTVMVLMALVSTFITPPLLMFLYDPTRKYHGYKKRGIQHLKPNSELRILTCLHGPENISGIINLLELSSGSLESPL 474 (769)
T ss_pred ccchHHHHHHHHHHHHhhHHHHHHHhcchhhhcCceEeehhhhcCCCCceEEEEEecCCCcchHHHHHHHHcCCCCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred eEEEEEEeeccCCcchhhhhccCCCCCCCCC-CCCCcchhhHHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHH
Q 046529 473 HVFAVHLVEHLGHSTAMLLMNDGSNSTGFND-SCPMQATEAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCL 551 (799)
Q Consensus 473 ~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~ 551 (799)
++|++|+|||.+|+.|++++|+.+ ++ ........++++.++|+.|++.++..|.++++|+++|+++||||||.+
T Consensus 475 ~v~~lhlveL~~~~~~~li~h~~~-----~~~~~~~~s~~~~~i~~aF~~f~~~~~~~v~v~~~Ta~s~~~~m~edic~l 549 (769)
T KOG1650|consen 475 SVYALHLVELVGRATPLLISHKLR-----KNGRVESRSSSSDQINVAFEAFEKLSQEGVMVRTFTALSPEKLMHEDICTL 549 (769)
T ss_pred ceeeeeeeecccccchhhhhhhhc-----cccccccccccchhhHHHHHHHHHhcCCcEEEEeehhhCChhhchhhhhHH
Confidence 999999999999999999999872 22 122234456799999999998545679999999999999999999999
Q ss_pred HHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccCCCceEEEEcCCCCCCcccccccccccccceEEEeccCCc
Q 046529 552 AEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNTPCSVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGP 630 (799)
Q Consensus 552 A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~ApCsVgIlvdRg~~~~~~~~~~~~~~~~~~~I~v~f~GG~ 630 (799)
|.++++++|++||||+|+.++.+|+.+ .+|.+|++|+++|||||||+||||....... ....+.+ +|+++|+||+
T Consensus 550 a~~~~~~liilpfhk~~~~~~~~e~~~~~~r~in~~vl~~aPCSVgIlvdRg~~~~~~~-~~~~~~~---~v~~lF~GG~ 625 (769)
T KOG1650|consen 550 ALDKGVSLIILPFHKHWSDGGTLESDDPAIRELNRNVLKNAPCSVGILVDRGLRRSGVT-QKRGSSY---KVVVLFLGGK 625 (769)
T ss_pred HHhhCCcEEEeehhhhccCCCceecCcHHHHHHHHHHHhcCCCeEEEEEecCcccccce-eccccee---EEEEEecCCh
Confidence 999999999999999999666899888 9999999999999999999999982211111 1222445 9999999999
Q ss_pred chHHHHHHHHHHhhCCCeEEEEEEeecCCCCCcc-ccccCCccccccchhhcHHHHHHHh-hhhcCCCCCeEEE-EEEec
Q 046529 631 DDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTV-LHQKHNSEVARCTEKQADDEDIYEF-KFKTMNDESISYI-ENVVN 707 (799)
Q Consensus 631 ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~-~~~~~~~~~~~~~e~~~d~~~l~~~-~~~~~~~~~v~y~-E~~v~ 707 (799)
||||||+|++||++||++++||+||+++++..+. ..+ ++++.+|++..+++ +..+..+.++.|. ||.|+
T Consensus 626 DDrEALa~~~rm~~~~~v~lTVirf~~~~~~~~~~~~~--------~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ek~v~ 697 (769)
T KOG1650|consen 626 DDREALALAKRMAENPRVTLTVIRFFPDESKYNRKVLV--------EVGKMLDQEGLEDFVKSTRESNLDIIYAEEKIVL 697 (769)
T ss_pred hhHHHHHHHHHHhhCCceEEEEEEeeccchhhcccccc--------hhhhhhhhhHHHHHHHHhhhchhhhhhhhHHHHh
Confidence 9999999999999999999999999986553210 112 66788888888888 6555566678888 69999
Q ss_pred ChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEeeecc
Q 046529 708 NGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYIS 779 (799)
Q Consensus 708 ~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq~~~ 779 (799)
++.||.+++|++.++|||++|||+++.+++.+.|++ ||+||||||+|||.|+|+||.+++||||+|||..
T Consensus 698 ~~~et~~~~~~~~~~ydL~ivGr~~~~~~~~t~gl~--~W~e~pELg~IGd~las~~~~~~~svlvvqq~~~ 767 (769)
T KOG1650|consen 698 NGAETTALLRSITEDYDLFIVGRSHGMLSEATGGLS--EWSECPELGVIGDLLASSDFSSKVSVLVVQQQLY 767 (769)
T ss_pred cchhHHHHHHHhccccceEEEecccccccchhcCch--hcccCccccccCccccccccCccceEEEEEeeec
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999964
No 3
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=100.00 E-value=1.2e-43 Score=416.42 Aligned_cols=362 Identities=19% Similarity=0.234 Sum_probs=304.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---ecc-----CCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcC
Q 046529 45 LFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---MFP-----YKSVMLLETYAYIALLFYLFLIGLDMDINLISATG 116 (799)
Q Consensus 45 ~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p-----~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~ 116 (799)
.++.|+++++.++.++..++||+|+|+++|||++ ++| ....+.++.++++|++++||++|+|+|++.+|+.+
T Consensus 5 ~~l~~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~ 84 (621)
T PRK03562 5 HTLIQALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTDVESILHFAEFGVVLMLFVIGLELDPQRLWKLR 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCCHHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 4889999999999999999999999999999999 555 34567799999999999999999999999999999
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 046529 117 MTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLS 196 (799)
Q Consensus 117 ~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~ 196 (799)
|+++.+|..++++|+++++.++++++.+ +..++++|.+++.||++++.++|+|+|+++++.||.+++.++++
T Consensus 85 --~~~~~~g~~qv~~~~~~~~~~~~~~g~~------~~~al~ig~~la~SStaiv~~~L~e~~~l~t~~G~~~l~~ll~~ 156 (621)
T PRK03562 85 --RSIFGGGALQMVACGGLLGLFCMLLGLR------WQVALLIGLGLALSSTAIAMQAMNERNLMVTQMGRSAFAILLFQ 156 (621)
T ss_pred --HHHHHHHHHHHHHHHHHHHHHHHHhCCC------HHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHHHHHHHHH
Confidence 9999999999999999988887777532 45788999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhC-----C-hHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHH
Q 046529 197 DLFTWMLLLACILVSN-----P-SQYY-EVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFI 269 (799)
Q Consensus 197 D~~~~ill~~~~~~~~-----~-~~~~-~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ 269 (799)
|+.+|++++++..+.. + ...| ..+..++++++.+++.|++++++.++..+ .+.+|.+...+++++++++++
T Consensus 157 Dl~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~l~~~~~~--~~~~e~~~~~~l~lv~~~a~l 234 (621)
T PRK03562 157 DIAAIPLVAMIPLLAASGASTTLGAFALSALKVAGALALVVLGGRYVTRPALRFVAR--SGLREVFTAVALFLVFGFGLL 234 (621)
T ss_pred HHHHHHHHHHHHHHccCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCchHHHHHHHHHHHHHHHH
Confidence 9999999888765432 1 1222 22222222333333334444444333322 125778888899999999999
Q ss_pred HHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHH
Q 046529 270 TDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKIL 349 (799)
Q Consensus 270 ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~ 349 (799)
++.+|+|+++|||++|+++++ .++++++++++++| .++|+|+||+++||++|+..+.. .|+.++.++++.+++|++
T Consensus 235 a~~~Gls~~lGAFlAGl~l~~-~~~~~~le~~i~pf-~~lll~lFFi~vG~~id~~~l~~--~~~~il~~~~~~~~~K~~ 310 (621)
T PRK03562 235 MEEVGLSMALGAFLAGVLLAS-SEYRHALESDIEPF-KGLLLGLFFIAVGMSIDFGTLLE--NPLRILILLLGFLAIKIA 310 (621)
T ss_pred HHHhCccHHHHHHHHHHHhcC-CccHHHHHHHHHHH-HHHHHHHHHHHhhhhccHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence 999999999999999999995 78999999999999 79999999999999999987764 344455666678999999
Q ss_pred HHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046529 350 ITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 350 ~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
++++.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|++..+|++
T Consensus 311 ~~~~~~~~~g~~~~~a~~~gl~L~~~Gef~~vl~~~a~~~~~i~~~~~~~lv~~v~l-S~~~tP~l~~~~~~ 381 (621)
T PRK03562 311 MLWLLARPLGVPRKQRRWFAVLLGQGGEFAFVVFGAAQMANVLEPEWAKLLTLAVAL-SMAATPLLLVLLDR 381 (621)
T ss_pred HHHHHHHHhCCCHhHHHHHHHHHhccccHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhhhH
Confidence 999999999999999999999999999999999999999999999999999986655 77777777666654
No 4
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=100.00 E-value=2.1e-43 Score=412.86 Aligned_cols=362 Identities=17% Similarity=0.197 Sum_probs=310.6
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---ecc-----CCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCC
Q 046529 46 FLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---MFP-----YKSVMLLETYAYIALLFYLFLIGLDMDINLISATGM 117 (799)
Q Consensus 46 ~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p-----~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~ 117 (799)
++..+.++++++.++++++||+|||+++|||++ ++| ....+.++.++++|++++||.+|+|+|++.+|+.+
T Consensus 7 ~~~~~~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~~~~~~~la~lGli~llF~~Gle~d~~~l~~~~- 85 (558)
T PRK10669 7 LITTIVGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVADTKLAPELAELGVILLMFGVGLHFSLKDLMAVK- 85 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccchHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHh-
Confidence 345667888999999999999999999999999 555 23457799999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHH
Q 046529 118 TNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSD 197 (799)
Q Consensus 118 ~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D 197 (799)
+..+..++.++++|+++++++++.++. + +..++++|++++.||++++.++++|+|+++++.||+++++++++|
T Consensus 86 -~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~al~lg~~ls~tS~~vv~~~L~e~~~l~s~~G~~~l~~~~~~D 158 (558)
T PRK10669 86 -SIAIPGAIAQIAVATLLGMALSAVLGW----S--LMTGIVFGLCLSTASTVVLLRALEERQLIDSQRGQIAIGWLIVED 158 (558)
T ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHhCC----C--HHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcchHHHHHHHHHHH
Confidence 888888899999999998888777653 2 457888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC----C----h-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 046529 198 LFTWMLLLACILVSN----P----S-----QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVL 264 (799)
Q Consensus 198 ~~~~ill~~~~~~~~----~----~-----~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l 264 (799)
+.+|++++++..+.. + . ..|.++..+++++++.++.|++..|+.++.++. + .+|.++..++++++
T Consensus 159 l~~i~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~e~~~l~~l~~~l 236 (558)
T PRK10669 159 LVMVLTLVLLPAVAGMMEQGDVGFATLAVDLGITIGKVIAFIAIMMLVGRRLVPWILARSAAT-G-SRELFTLSVLALAL 236 (558)
T ss_pred HHHHHHHHHHHHHhcccCCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-C-CchHHHHHHHHHHH
Confidence 999998887755421 1 1 123445566677778888999999999998765 4 67888888888888
Q ss_pred HHHHH-HHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHH
Q 046529 265 LCGFI-TDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGF 343 (799)
Q Consensus 265 ~~~~~-ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~ 343 (799)
++++. ++.+|+|+++|||++|+++|+ .+.++++.+...++ .++|+|+||+++|+++|+..+.. .+...+.++++.
T Consensus 237 ~~a~~~~~~lGls~~lGAflaGl~l~~-~~~~~~~~~~~~~~-~~~f~plFFv~~G~~~d~~~l~~--~~~~~~~~~~~~ 312 (558)
T PRK10669 237 GIAFGAVELFDVSFALGAFFAGMVLNE-SELSHRAAHDTLPL-RDAFAVLFFVSVGMLFDPMILIQ--QPLAVLATLAII 312 (558)
T ss_pred HHHHHHHHHcCccHHHHHHHHHHHHhC-ChhHHHHHHHHhhH-HHHHHHHHHHHhhhhcCHHHHHH--HHHHHHHHHHHH
Confidence 88865 699999999999999999995 77888888888887 78999999999999999987754 334455667778
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046529 344 GMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 344 ~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
+++|++++++.++++|+++|+++.+|++|++||+++++++..+.+.|+++++.|+.++++++++++++|.+.++..+.
T Consensus 313 ~v~K~~~~~~~~~~~g~~~~~a~~~gl~l~~~Gef~lii~~~~~~~gii~~~~~~~~v~~~~~t~~~~P~l~~~~~~~ 390 (558)
T PRK10669 313 VFGKSLAAFFLVRLFGHSRRTALTIAASLAQIGEFAFILAGLGMALNLLPQAGQNLVLAGAILSIMLNPVLFTLLERY 390 (558)
T ss_pred HHHHHHHHHHHHHHhCCChhhHHHHHHHHhcccchHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence 899999999999999999999999999999999999999999999999999999999999988777766676766553
No 5
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=100.00 E-value=1e-42 Score=407.96 Aligned_cols=361 Identities=18% Similarity=0.261 Sum_probs=300.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---ecc-----CCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCC
Q 046529 46 FLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---MFP-----YKSVMLLETYAYIALLFYLFLIGLDMDINLISATGM 117 (799)
Q Consensus 46 ~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p-----~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~ 117 (799)
++.++.+++.++.++.+++||+|+|+++|||++ ++| .+..+.+..++++|++++||.+|+|+|++.+|+.+
T Consensus 6 ~~~~~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~~~~i~~laelGvv~LLF~iGLel~~~~l~~~~- 84 (601)
T PRK03659 6 LLTAGVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISDVDEILHFSELGVVFLMFIIGLELNPSKLWQLR- 84 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCcHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHH-
Confidence 567888899999999999999999999999999 555 23456788999999999999999999999999999
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHH
Q 046529 118 TNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSD 197 (799)
Q Consensus 118 ~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D 197 (799)
|+++.+|..++++|+++++.++++++.+ +..++++|++++.||++++.++|+|+|+.+++.||++++..+++|
T Consensus 85 -~~~~~~g~~~v~~t~~~~~~~~~~~g~~------~~~a~~~g~~la~SSTaiv~~iL~e~~~~~t~~G~~~l~vll~~D 157 (601)
T PRK03659 85 -RSIFGVGAAQVLLSAAVLAGLLMLTDFS------WQAAVVGGIGLAMSSTAMALQLMREKGMNRSESGQLGFSVLLFQD 157 (601)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHccC------HHHHHHHHHHHHHHHHHHHHHHHHHcccccCchHHHHHHHHHHHH
Confidence 9999999999999998877766655422 447888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhC-C-h--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHh
Q 046529 198 LFTWMLLLACILVSN-P-S--QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGC 273 (799)
Q Consensus 198 ~~~~ill~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~ 273 (799)
+.+|++++++..+.. . . .++..+..++.+++.+++.|++.+++.++..+ .+.+|.++..+++++++++++++.+
T Consensus 158 i~~i~ll~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~e~~~~~~l~~vl~~a~l~~~~ 235 (601)
T PRK03659 158 LAVIPALALVPLLAGSADEHFDWMKIGMKVLAFAGMLIGGRYLLRPLFRFIAA--SGVREVFTAAALLLVLGSALFMDAL 235 (601)
T ss_pred HHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHHHHHHHHh
Confidence 999999888765543 1 1 12221111222222233334444444433321 2367888999999999999999999
Q ss_pred chhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 046529 274 GAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFL 353 (799)
Q Consensus 274 G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 353 (799)
|+|+++|||++|+++|+ .++++++.+++++| .++|+|+||+++||++|+..+.. .|+.++.++++.+++|++++++
T Consensus 236 Gls~~LGAFlaGl~l~~-s~~~~~l~~~i~pf-~~lll~lFFi~vGm~id~~~l~~--~~~~il~~~~~~l~~K~~~~~~ 311 (601)
T PRK03659 236 GLSMALGTFIAGVLLAE-SEYRHELEIAIEPF-KGLLLGLFFISVGMALNLGVLYT--HLLWVLISVVVLVAVKGLVLYL 311 (601)
T ss_pred CccHHHHHHHHHHHhcC-CchHHHHHHHHHHH-HHHHHHHHHHHHhhhccHHHHHH--hHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999996 78999999999999 79999999999999999988765 3555666777788999999999
Q ss_pred HHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046529 354 VSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 354 ~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
.++++|+++++++.+|++|+++|+++++++..+.+.|+++++.|+.+++++++ |++.+|++..+|+|
T Consensus 312 ~~~~~g~~~~~al~~g~~L~~~Gef~~vl~~~a~~~g~i~~~~~~~lv~~v~l-s~~~tP~l~~~~~~ 378 (601)
T PRK03659 312 LARLYGLRSSERMQFAGVLSQGGEFAFVLFSAASSQRLLQGDQMALLLVVVTL-SMMTTPLLMKLIDK 378 (601)
T ss_pred HHHHhCCCHHHHHHHHHHHhccccHHHHHHHHHHhCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999777666 66778877776655
No 6
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.5e-42 Score=383.61 Aligned_cols=367 Identities=22% Similarity=0.372 Sum_probs=319.7
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---ecc------CCChHHHHHHHHHHHHHHHHHHhhccChHHH
Q 046529 42 YAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---MFP------YKSVMLLETYAYIALLFYLFLIGLDMDINLI 112 (799)
Q Consensus 42 ~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p------~~~~~~l~~la~lGli~~lFl~Gle~d~~~l 112 (799)
+....+.|+.++++++.++++++||+|+|+++||+++ ++| .+..+.++.++++|++++||.+|+|+|++.+
T Consensus 3 ~~~~~l~~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~laelGvi~LlF~~GLE~~~~~l 82 (397)
T COG0475 3 MLSLILLQLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELLAELGVVFLLFLIGLEFDLERL 82 (397)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHHHHHhHHHHHHHHHHCcCHHHH
Confidence 3446889999999999999999999999999999999 554 3578999999999999999999999999999
Q ss_pred HhcCCCch-hhHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHH
Q 046529 113 SATGMTNK-VVSIALAGTLVPMAVGLGAFFL-VIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIAL 190 (799)
Q Consensus 113 ~~~~~~~~-~~~ia~~~~lip~~~g~~~~~~-l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lal 190 (799)
|+++ |+ +...+..++.+|++++....+. ++.+ +..++++|.+++.||.++++++++|+|..+++.|++++
T Consensus 83 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~------~~~al~lg~~l~~sS~~i~~~iL~e~~~~~~~~g~~~l 154 (397)
T COG0475 83 KKVG--RSVGLGVAQVGLTAPFLLGLLLLLGILGLS------LIAALFLGAALALSSTAIVLKILMELGLLKTREGQLIL 154 (397)
T ss_pred HHhc--hhhhhhHHHHHHHHHHHHHHHHHHHHhccC------hHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 9999 99 8889999999998888665554 3322 44799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC--C---h-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 046529 191 SSALLSDLFTWMLLLACILVSN--P---S-QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVL 264 (799)
Q Consensus 191 s~a~v~D~~~~ill~~~~~~~~--~---~-~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l 264 (799)
++++++|+.++++++++..+.+ + . .++......+|.++..+..|++.+|+.|+..+ .+.+|..+.+++++++
T Consensus 155 ~~~i~~Di~~i~lLai~~~l~~~g~~~~~~~~~~~~~~~~f~~~~l~~g~~l~~~~~r~~~~--~~~~e~~~~~~l~i~l 232 (397)
T COG0475 155 GALVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLALLLLLGRYLLPPLFRRVAK--TESSELFILFVLLLVL 232 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccchHHHHHHHHHHHH
Confidence 9999999999999999998864 2 1 23445555666666666678888888888753 2478899999999999
Q ss_pred HHHHHHHHhchhHHHHHHHHHhhcCCCCCch-hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHH
Q 046529 265 LCGFITDGCGAHSAIGAFTLGVIMPKKQPIT-NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGF 343 (799)
Q Consensus 265 ~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~-~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~ 343 (799)
.+++++|.+|+|+++|||++|+++++ .+.+ ++++++++++.+++|+|+||+.+|+++|++.+... +..++.++.+.
T Consensus 233 ~~a~l~e~~gls~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~--~~~~l~~~~~~ 309 (397)
T COG0475 233 GAAYLAELLGLSMILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLEN--LLLILLLVALA 309 (397)
T ss_pred HHHHHHHHhChhHHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhcc--HHHHHHHHHHH
Confidence 99999999999999999999999995 5566 79999999998779999999999999999998874 55578888889
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 046529 344 GMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKAT 422 (799)
Q Consensus 344 ~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~ 422 (799)
.++|.+++++.+|..|.+++++...|+.+.++|+++++.++.+.. +.++++.++..+++++++|.+.+++.+.++++.
T Consensus 310 i~~K~~~~~~~~~~~g~~~~~~~~~g~~~~~~ge~~~v~~~~~~~-~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~ 387 (397)
T COG0475 310 ILGKILGAYLAARLLGFSKRLALGIGLLLRQGGEFAFVLAGIALG-SAISEALLTAVVILSMITTPILPLLTPILLKRL 387 (397)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHhhhhhhhHHHHHHHHhccc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999886 578888999888888887777776677666543
No 7
>PRK05326 potassium/proton antiporter; Reviewed
Probab=100.00 E-value=3.6e-36 Score=351.71 Aligned_cols=369 Identities=15% Similarity=0.104 Sum_probs=304.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee---ecc-------CCChHHHHHHHHHHHHHHHHHHhhccChHH
Q 046529 42 YAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE---MFP-------YKSVMLLETYAYIALLFYLFLIGLDMDINL 111 (799)
Q Consensus 42 ~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p-------~~~~~~l~~la~lGli~~lFl~Gle~d~~~ 111 (799)
+...++++++++++++.+++.+++|+++|.+++++++ ++| .++.+..+.++++|+++++|..|+|+|++.
T Consensus 3 ~~~~~ll~~~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~ 82 (562)
T PRK05326 3 TINSLLLIGALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSS 82 (562)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHH
Confidence 4557889999999999999999999999999999999 444 234577899999999999999999999999
Q ss_pred HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccc-cCChhHHHHH
Q 046529 112 ISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRI-LHLDIGRIAL 190 (799)
Q Consensus 112 l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl-~~s~~g~lal 190 (799)
+|+++ ++++.+++.++++|++++...++++.. ++ +..++++|+++++|+++++.++++|+|+ +++++|+++.
T Consensus 83 l~~~~--~~~~~la~~gv~~t~~~~g~~~~~l~g---~~--~~~alllgai~s~Td~a~v~~iL~~~~l~l~~~v~~~l~ 155 (562)
T PRK05326 83 FRPAL--GPALSLATLGVLITAGLTGLFAHWLLG---LD--WLEGLLLGAIVGSTDAAAVFSLLRGKGLNLKERVASTLE 155 (562)
T ss_pred HHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhc---CC--HHHHHHHhhhhccCchHHHHHHHhccCCCcchhHHhHhh
Confidence 99999 999999999999999885554444432 22 5588999999999999999999999996 8999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC-C--h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 046529 191 SSALLSDLFTWMLLLACILVSN-P--S----QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGV 263 (799)
Q Consensus 191 s~a~v~D~~~~ill~~~~~~~~-~--~----~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~ 263 (799)
+++.+||.++++++.++..+.. + . .++.++..+++.++.+++.++++.|+.+|... ..++.+..++++++
T Consensus 156 ~eS~~nD~~ai~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~G~~~g~l~~~l~~~~~~---~~~~~~~i~~l~~~ 232 (562)
T PRK05326 156 IESGSNDPMAVFLTITLIELITGGETGLSWGFLLLFLQQFGLGALIGLLGGWLLVQLLNRIAL---PAEGLYPILVLAGA 232 (562)
T ss_pred hhhhcccHHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC---chhhHHHHHHHHHH
Confidence 9999999999998877766532 1 1 12334455556667777888999999988732 23557888899999
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHH
Q 046529 264 LLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGF 343 (799)
Q Consensus 264 l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~ 343 (799)
+++++++|.+|.|+++|+|++|+++++.++..+.-.+++.+...+++.|+||+++|+.+|++.+.+. .+..+++.+++.
T Consensus 233 l~~~~~a~~lg~Sg~la~~iaGl~l~n~~~~~~~~i~~~~~~l~~l~~~~~Fv~lGl~~~~~~l~~~-~~~~l~i~~~l~ 311 (562)
T PRK05326 233 LLIFALTAALGGSGFLAVYLAGLVLGNRPIRHRHSILRFFDGLAWLAQIGMFLVLGLLVTPSRLLDI-ALPALLLALFLI 311 (562)
T ss_pred HHHHHHHHHHCCcHHHHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHH
Confidence 9999999999999999999999999976555544455555555889999999999999999877542 233333444567
Q ss_pred HHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCC-CCchhHHHHHHHHHHHHHHHHHHHhhhhh
Q 046529 344 GMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLV-DEAFPPTIFALFVMTCVIEPILAATYKAT 422 (799)
Q Consensus 344 ~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~-~~~f~~lv~~~lv~t~i~~plv~~ly~~~ 422 (799)
+++|+++++++++.+++++||+..+|| .++||.++++++.++...|+.+ +..|.++++++++++.+.++.++.+.++-
T Consensus 312 ~vaR~l~v~l~~~~~~~~~~e~~~i~~-~g~RG~v~i~lA~~~~~~~~~~~~~~~~~~~~vvl~S~~i~g~tl~~~a~~l 390 (562)
T PRK05326 312 LVARPLAVFLSLLPFRFNLREKLFISW-VGLRGAVPIVLATFPMMAGLPNAQLIFNVVFFVVLVSLLLQGTTLPWAARKL 390 (562)
T ss_pred HHHHHHHHHHHHccCCCCHhhhheeee-ecchhHHHHHHHHHHHHcCCCchhhhhhhhheeeHHHHHHHHhhHHHHHHHc
Confidence 889999999999999999999999999 5899999999999999999886 46678888888888888888887766543
No 8
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=100.00 E-value=9.4e-37 Score=341.47 Aligned_cols=362 Identities=25% Similarity=0.388 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHhcccCCChhhhhhee---eccC-----CC-hHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhh
Q 046529 52 YVLFINHLLVAILKPLRQPPIVGQILE---MFPY-----KS-VMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVV 122 (799)
Q Consensus 52 lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p~-----~~-~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~ 122 (799)
++++.+.+.+.++||+++|.+++|+++ ++|. +. ...++.++++|+.+++|.+|+|+|.+.+|+++ ++++
T Consensus 3 lli~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~~~~~~~~~~~~~~~l~~i~l~~llF~~G~~~d~~~l~~~~--~~~~ 80 (380)
T PF00999_consen 3 LLILLAFVAGILFRRLGIPSIIGYILVGIVLGPSGLGLLEPDNPSFELLAEIGLAFLLFEAGLELDIKELRRNW--RRAL 80 (380)
T ss_dssp ---------------------------------------------S-SSHHHHS--SSHHHHTTGGGG------------
T ss_pred EEeehHHHHHHHHHHhCCCHHHHHHHheeehhhhhhhhccchhhHHHHHHHHHHHHHHHHHHHhhccccccccc--cccc
Confidence 345556677778999999999999999 3331 22 38899999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHH
Q 046529 123 SIALAGTLVPMAV-GLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTW 201 (799)
Q Consensus 123 ~ia~~~~lip~~~-g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ 201 (799)
.+++.++++|+++ ++.+++++.. .+++ +..++++|.+++.||++++.++++|.+..+++.++++++++++||++++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~al~l~~~~~~ts~~~v~~~l~~~~~~~~~~~~~~~~~~~i~d~~~i 157 (380)
T PF00999_consen 81 ALGLVGFLLPFILVGFLLSFFLFI-LGLS--WAEALLLGAILSATSPAIVSPVLKELGLLPSRLGRLLLSESVINDIIAI 157 (380)
T ss_dssp ------------------------------------TTHHHHTT--HHHHHHHH-HHHT-SSTTHHHHTTTTTTTTTTTT
T ss_pred ccccceeeehhhHHHHHHHHhhcc-chhh--hHHHhhhHHhhhcccccchhhhhhhhhcccccccchhhhhchhhccchh
Confidence 9999999999998 7776643211 1233 5688999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhC-C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHH
Q 046529 202 MLLLACILVSN-P--SQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSA 278 (799)
Q Consensus 202 ill~~~~~~~~-~--~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~i 278 (799)
+++.+...... + ...+.....+...++...+.+....|+.++..+..++.++.+..+++++++.+++++|.+|.+++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~a~~~g~s~~ 237 (380)
T PF00999_consen 158 ILLSILISLAQASGQSSLGQLLLSFLWIILIGIVIGLLFGWLLRRLIRRASPSSEIFILLVLALILLLYGLAEILGLSGI 237 (380)
T ss_dssp TTT-----------------------------------------------------------------------------
T ss_pred hhhhhhhhhhcccccccccchhcchhhhhhhheeeecccchHHHHhhhhccccchhhHHHHHHHHhhhcccccccccccc
Confidence 99888777652 1 22222222222233333333444444444432210246778899999999999999999999999
Q ss_pred HHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhcccccccc-CchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046529 279 IGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFS-SHKPWMFVLVVLFGFGMSKILITFLVSLL 357 (799)
Q Consensus 279 lGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~-~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 357 (799)
+|+|++|++++ +.+..+++.++++++.++++.|+||+++|+++|++.+. +...|...+.+++..+++|++++++.+++
T Consensus 238 l~af~~Gl~~~-~~~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~ 316 (380)
T PF00999_consen 238 LGAFIAGLILS-NSPFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKFIGVYLASRL 316 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ceeeeeehccc-cccccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhhceeehhhhh
Confidence 99999999999 57888889999999977999999999999999998874 22256667777777779999999999999
Q ss_pred hCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 046529 358 HKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATY 419 (799)
Q Consensus 358 ~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly 419 (799)
.|.++||+..+|+.+++||+++++++..+.+.|+++++.+++++.++++++.+.++.++.+.
T Consensus 317 ~~~~~~~~~~~~~~~~~~g~~~l~la~~~~~~~~~~~~~~~~~~~~vl~t~ii~~~~~~~l~ 378 (380)
T PF00999_consen 317 FGIPWKEALFIGLGMLPRGEVSLALALIALNLGIISEQMFTIIIAAVLLTIIIAGIILSPLL 378 (380)
T ss_dssp ------HHHHTTTTSS--HHHHHHHHHHHHH-------------------------------
T ss_pred cccccchhHHHHHhhcCccHHHHHHHHHHHhcCCCCHHHHHHheeeeeeHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999887777777666554
No 9
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=100.00 E-value=1.6e-31 Score=285.64 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=222.3
Q ss_pred HHHHHHHHHhcccCCChhhhhhee---eccC-----CChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHH
Q 046529 55 FINHLLVAILKPLRQPPIVGQILE---MFPY-----KSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIAL 126 (799)
Q Consensus 55 ~~s~~~~~ll~rl~~P~ivg~Ila---l~p~-----~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~ 126 (799)
+++.+++.++||+|+|++++++++ ++|. +..+.++.++++|+++++|.+|+|+|++.+||++ |+++.+++
T Consensus 2 ~~a~~~~~l~~~l~lP~~v~~il~GillGp~~lg~i~~~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~--~~~~~~~~ 79 (273)
T TIGR00932 2 LAAVLAVPLSRRLGIPSVLGYLLAGVLIGPSGLGLISNVEGVNHLAEFGVILLMFLIGLELDLERLWKLR--KAAFGVGV 79 (273)
T ss_pred cHHHHHHHHHHHhCCCHHHHHHHHHHHhCcccccCCCChHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH--HHHHHHHH
Confidence 457788999999999999999998 4552 4557899999999999999999999999999999 99999999
Q ss_pred HHHHHH-HHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 046529 127 AGTLVP-MAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLL 205 (799)
Q Consensus 127 ~~~lip-~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~ 205 (799)
.++++| +++++.++++++. + +..++++|++++.||++++.++++|+|+.+++.|+++++++++||+++|++++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~----~--~~~~~~lg~~ls~Ts~~v~~~il~~~~~~~~~~g~l~l~~~~~~D~~~i~~l~ 153 (273)
T TIGR00932 80 LQVLVPGVLLGLLLGHLLGL----A--LGAAVVIGIILALSSTAVVVQVLKERGLLKTPFGQTVLGILLFQDIAVVPLLA 153 (273)
T ss_pred HHHHHHHHHHHHHHHHHHCC----C--HHHHHHHHHHHHHhHHHHHHHHHHHcCcccChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 7777767766643 2 45889999999999999999999999999999999999999999999999998
Q ss_pred HHHHhhC----C--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHH
Q 046529 206 ACILVSN----P--SQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAI 279 (799)
Q Consensus 206 ~~~~~~~----~--~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~il 279 (799)
+...... + ...+.+...+++.++.+++.++...|+.|+.++. + ..|.+...++.+++++++++|.+|.|+++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~~la~~~g~s~~l 231 (273)
T TIGR00932 154 LLPLLATSASTEHVALALLLLKVFLAFLLLVLLGRWLLRPVLRLTAEL-R-PSELFTAGSLLLMFGSAYFADLLGLSMAL 231 (273)
T ss_pred HHHHHhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-C-CchHHHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 8877643 1 2223344445555566778889999999988765 3 45788889999999999999999999999
Q ss_pred HHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccc
Q 046529 280 GAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSN 323 (799)
Q Consensus 280 Gaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~id 323 (799)
|||++|+++++ .+.++++.++++++. ++|.|+||+++|+++|
T Consensus 232 gaf~aGl~~~~-~~~~~~l~~~l~~~~-~~f~plFF~~~G~~~~ 273 (273)
T TIGR00932 232 GAFLAGVVLSE-SEYRHKLESDLEPIG-GVLLPLFFISVGMSVD 273 (273)
T ss_pred HHHHHHHHHcC-CchHHHHHHHHHhHH-HHHHHHHHHHhCccCC
Confidence 99999999997 556788999999997 9999999999999987
No 10
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=99.97 E-value=1.8e-29 Score=255.47 Aligned_cols=356 Identities=20% Similarity=0.264 Sum_probs=292.6
Q ss_pred HHHHHHHHHHHHHHhcccCCChhhhhhee---eccC-----CChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchh
Q 046529 50 LAYVLFINHLLVAILKPLRQPPIVGQILE---MFPY-----KSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKV 121 (799)
Q Consensus 50 i~lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p~-----~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~ 121 (799)
+..-+.++.+++.+..|+++|+.|||+++ ..|- .....-..++++|++++||-+|++..++.+...+ .-+
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAelGViLLmFgvGLhfslkdLLavk--~iA 88 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAELGVILLMFGVGLHFSLKDLLAVK--AIA 88 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHhhHHHHHHhcchheeHHHHhhHH--HHh
Confidence 34456678899999999999999999999 4541 2344455999999999999999999999998766 445
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHH
Q 046529 122 VSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTW 201 (799)
Q Consensus 122 ~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ 201 (799)
+.-++.++.+....|..+++.++ |+ +...+.+|.++|..|..|+.|.|+|.++.+++-||++++--++.|+..+
T Consensus 89 ipgAl~qia~at~lg~gL~~~lg----ws--~~~glvfGlaLS~aSTVvllraLqEr~lidt~rG~iAiGwLiveDl~mV 162 (408)
T COG4651 89 IPGALAQIALATLLGMGLSSLLG----WS--FGTGIVFGLALSVASTVVLLRALEERQLIDTQRGRIAIGWLIVEDLAMV 162 (408)
T ss_pred cchHHHHHHHHHHHHhHHHHHcC----CC--cccceeeeehhhhHHHHHHHHHHHHhccccccCceEEEeehhHHHHHHH
Confidence 55566666666667777776665 44 5577899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHhhC-----C----h----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHH
Q 046529 202 MLLLACILVSN-----P----S----QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGF 268 (799)
Q Consensus 202 ill~~~~~~~~-----~----~----~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~ 268 (799)
+.+.+.-++++ . . ..+.......|+.++.++.|++..|+..+... ...+|.+...++..+++.++
T Consensus 163 l~Lvllpa~a~~~g~~~~~~~~~~~~l~~Tl~Kv~af~alml~VgrrviPw~le~~a~--tGsrElf~L~vla~ALgVa~ 240 (408)
T COG4651 163 LALVLLPALAGVLGQGDVGFATLLVDLGITLGKVAAFIAIMLVVGRRLIPWILERVAA--TGSRELFTLAVLAIALGVAF 240 (408)
T ss_pred HHHHHhHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHHHHHHHHHHHHHHHhh
Confidence 88877766543 1 1 12345577889999999999999999998742 23788999999999998776
Q ss_pred H-HHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHH
Q 046529 269 I-TDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSK 347 (799)
Q Consensus 269 ~-ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K 347 (799)
- ++.+|.++.+|||++|+++. +....++..+..-++ .+.|.-+||+++||..|+..+.+. ...++..+++.+.+|
T Consensus 241 Ga~~LfgvsfaLGAffaGMvL~-eselshraa~~slpL-rdaFaVlFFvsVGmlf~P~~l~~~--pl~vlatllii~~gK 316 (408)
T COG4651 241 GAAELFGVSFALGAFFAGMVLA-ESELSHRAAEDSLPL-RDAFAVLFFVSVGMLFDPMILIQQ--PLAVLATLLIILFGK 316 (408)
T ss_pred ccceeeccchhHHHHHHHHHhc-chhhhHHHHHhccCH-HHHHHHHHHHHhhhhcCcHHhhcc--hHHHHHHHHHHHhhh
Confidence 5 47899999999999999999 588888888888787 899999999999999999877654 234556666777899
Q ss_pred HHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 046529 348 ILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYK 420 (799)
Q Consensus 348 ~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~ 420 (799)
-+..+...+.+|.|.|.++.++..+.+.|+++++++..+.+.+++.+.. --++++.-+.+++..|+.....+
T Consensus 317 s~aaf~ivr~Fg~~~~TaLtis~SLaqigEFsfIlaGLgi~l~llp~~g-r~LvlagailsIl~nPllf~~~d 388 (408)
T COG4651 317 SVAAFFIVRAFGHPVRTALTISASLAQIGEFSFILAGLGIKLNLLPEAG-RDLVLAGAILSILLNPLLFALLD 388 (408)
T ss_pred HHHHHHHHHHhCCcchHHHHHHHHHHhhhhHHHHHHHHhhhhccCcHHH-HHHHHHHHHHHHHHhHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998544 44555555658888888755444
No 11
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=99.93 E-value=7.9e-24 Score=244.76 Aligned_cols=355 Identities=13% Similarity=0.076 Sum_probs=246.7
Q ss_pred HHHHHHHHHHHHhcccCCChhhhhhee---eccC----CChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHH
Q 046529 52 YVLFINHLLVAILKPLRQPPIVGQILE---MFPY----KSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSI 124 (799)
Q Consensus 52 lil~~s~~~~~ll~rl~~P~ivg~Ila---l~p~----~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~i 124 (799)
.+++++.....+++|+++|.+++++++ ++|. .....-+.+-.+++..++|..|+++|++.+|+++ +.++.+
T Consensus 5 ~l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~~~~~~~~~~~~~~~~~~~Lp~lLF~~g~~~~~~~l~~~~--~~i~~l 82 (525)
T TIGR00831 5 ELVMLATAVAVTVKFIRLPYPIALILAGLLLGLAGLLPEVPLDREIVLFLFLPPLLFEAAMNTDLRELRENF--RPIALI 82 (525)
T ss_pred HHHHHHHHHHHHhcccCCCHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHHH
Confidence 344555566789999999999999998 2221 1111123455689999999999999999999999 999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHH
Q 046529 125 ALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLL 204 (799)
Q Consensus 125 a~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill 204 (799)
++.++++|++++....+++. +. + +..++++|+++|+|+++++.+++++.+ .++++.+++.+++++||..+++++
T Consensus 83 a~~~vlit~~~v~~~~~~~~-~l--~--~~~alllGails~TDpvav~~il~~~~-~p~rl~~il~gESllND~~alvlf 156 (525)
T TIGR00831 83 AFLLVVVTTVVVGFSLNWIL-GI--P--LALALILGAVLSPTDAVAVLGTFKSIR-APKKLSILLEGESLLNDGAALVVF 156 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHh-cc--c--HHHHHHHHHHhCCCCHHHHHHHHhcCC-CCHHHHHHHhhhhhhcchHHHHHH
Confidence 99999999998776666543 32 2 558999999999999999999999987 678899999999999999999999
Q ss_pred HHHHHhhC--C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhH
Q 046529 205 LACILVSN--P-----SQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHS 277 (799)
Q Consensus 205 ~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ 277 (799)
.++..... + ...+.++..++..+++++++..+..|+.++..+ .+.....+++++++++++++|.+|.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~f~~~~~~gi~vG~~~g~~~~~l~~~~~~----~~~~~~~l~l~~~~~~y~lAe~lg~Sg 232 (525)
T TIGR00831 157 AIAVAVALGKGVFDPLNAALDFAVVCVGGIAAGLAVGYLAYRLLRAKID----DPLVEIALTILAPFAGFLLAERFHFSG 232 (525)
T ss_pred HHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----ccHHHHHHHHHHHHHHHHHHHHhCCCH
Confidence 88776642 1 122233333334444455555666666655321 344677888999999999999999999
Q ss_pred HHHHHHHHhhcCCCCCc---hhH---HHHHHhhhhhhhhhhHHHHHhhhccccccc--cC----ch---hHHH---HHHH
Q 046529 278 AIGAFTLGVIMPKKQPI---TNT---FKDKLDDFLVSSGLPGFFLLTGFRSNLVVF--SS----HK---PWMF---VLVV 339 (799)
Q Consensus 278 ilGaf~aGl~lp~~~~~---~~~---l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l--~~----~~---~~~~---~~~i 339 (799)
++++|++|+++++..+. ..+ -.+.+......++.+++|+++|++++.... .. .+ .+.. .+++
T Consensus 233 ilAvv~aGl~l~~~~~~~~~~~~~~~~~~~fw~~l~~ll~~~iFvllGl~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (525)
T TIGR00831 233 VIAVVAAGLILTNYGRDFSMSPTTRLIALDFWSVIVFLVNGIIFILIGVQTPGTIFSAWKEILVAPAAVILALFTNAFVI 312 (525)
T ss_pred HHHHHHHHHHHccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHHHHHHH
Confidence 99999999999975433 112 223344445788999999999999863211 10 00 0100 1122
Q ss_pred HHHHHHHHHHHHHHHH--Hh-----hCCChHHHHHHHHHHhhhhhHHHHHHhhhcc---CC--C-----CCCCchhHHHH
Q 046529 340 LFGFGMSKILITFLVS--LL-----HKIPPKEGLALGLLMNTKGLLALIVLNTACN---RK--D-----LVDEAFPPTIF 402 (799)
Q Consensus 340 i~~~~~~K~~~~~l~~--~~-----~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~---~~--i-----i~~~~f~~lv~ 402 (799)
.....+.|++..+... ++ .+++||+.+.++| .+.||.++++++..... .| . +-.-+|.++++
T Consensus 313 ~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~r~~~v~~w-~G~RG~vslA~al~~p~~~~~g~~~p~r~~i~~~~~~vVl~ 391 (525)
T TIGR00831 313 YPVMTYVRFLWTMKPFSNRFLKKKPMEFGTRWKHVVSW-AGLRGAIPLALALSFPNQLLSGMAFPARYELVFLAAGVILF 391 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccCCCChhhHHHhee-ccchHHHHHHHHHHccccccCCCCCchHHHHHHHHHHHHHH
Confidence 2233445655443321 11 2578999999999 79999999998754321 11 1 11123445556
Q ss_pred HHHHHHHHHHHHHHHhh
Q 046529 403 ALFVMTCVIEPILAATY 419 (799)
Q Consensus 403 ~~lv~t~i~~plv~~ly 419 (799)
+.++.+...||+++++-
T Consensus 392 TllvqG~tlp~l~r~l~ 408 (525)
T TIGR00831 392 SLLVQGISLPIFVKRKF 408 (525)
T ss_pred HHHHHHhhHHHHHHhcC
Confidence 66666666677777654
No 12
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=99.92 E-value=2e-22 Score=233.93 Aligned_cols=330 Identities=10% Similarity=0.055 Sum_probs=242.4
Q ss_pred HHHHHHHHHHhcccCCChhhhhhee---ecc-------CCC----hHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCc
Q 046529 54 LFINHLLVAILKPLRQPPIVGQILE---MFP-------YKS----VMLLETYAYIALLFYLFLIGLDMDINLISATGMTN 119 (799)
Q Consensus 54 l~~s~~~~~ll~rl~~P~ivg~Ila---l~p-------~~~----~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~ 119 (799)
++.+.+..++-+|+.+|..+-++++ ++| +.. ....-.++++++++.+|.+|++++.+.+++.+ +
T Consensus 23 ll~~l~s~~lkeRl~Ls~~~v~Ll~GiilGP~~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~w--r 100 (810)
T TIGR00844 23 SIFSLVSLFVKEKLYIGESMVASIFGLIVGPHCLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHW--V 100 (810)
T ss_pred HHHHHHHHHHHhhcCCcHHHHHHHHHHHhhhhhhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhH--H
Confidence 3344444455559999999988887 333 111 22223399999999999999999999999999 9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHH---hccccCChhHHHHHHHHHHH
Q 046529 120 KVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILT---DLRILHLDIGRIALSSALLS 196 (799)
Q Consensus 120 ~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~---elkl~~s~~g~lals~a~v~ 196 (799)
..+.+++.++.+++++++++++++..+.+ +..++++|+++++|++.....+++ ..+ ++.++..++.+++.+|
T Consensus 101 sV~rLl~~~M~lT~livAL~a~~Li~GL~----~~~ALLLGAILAPTDPVLAssV~kg~~~~r-vP~rLR~lL~~ESGlN 175 (810)
T TIGR00844 101 SVTMLLVPVMTSGWLVIALFVWILVPGLN----FPASLLMGACITATDPVLAQSVVSGTFAQK-VPGHLRNLLSCESGCN 175 (810)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCC----HHHHHHHHhhhcCCcHHHHHHHHhcccccc-CChHHHhHHhhhhhcc
Confidence 99999999999999999888887743333 458999999999999776666665 223 6788999999999999
Q ss_pred HHHHHHHHHHHHHhhC----C---h--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH
Q 046529 197 DLFTWMLLLACILVSN----P---S--Q-YYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLC 266 (799)
Q Consensus 197 D~~~~ill~~~~~~~~----~---~--~-~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~ 266 (799)
|.++++++.+++.+.. + . + .+.++..+++.+++++++..+..|+.++..+...-..+.++.+.+++++++
T Consensus 176 DGlAfpfv~LaL~ll~~~~~g~~~~~~w~l~~~L~~i~~GiliG~vvG~l~~~Ll~~l~rr~~i~~esfla~~LaLAli~ 255 (810)
T TIGR00844 176 DGLAFPFVFLSMDLLLYPGRGGEIVKDWICVTILWECIFGSILGCIIGYCGRKAIRFAEGKNIIDRESFLAFYLILALTC 255 (810)
T ss_pred cHHHHHHHHHHHHHHhccCccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHH
Confidence 9999987765543321 1 1 1 123344444555555555566666655543210113456677788888889
Q ss_pred HHHHHHhchhHHHHHHHHHhhcCCCCCchhH-HHHHHhhhhhhhhhhHHHHHhhhccccccccC----chhHHHHHHHHH
Q 046529 267 GFITDGCGAHSAIGAFTLGVIMPKKQPITNT-FKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSS----HKPWMFVLVVLF 341 (799)
Q Consensus 267 ~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~-l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~----~~~~~~~~~ii~ 341 (799)
+.+++.+|.++++++|++|+++.+....... -...+..+...++..++|+++|+.+....+.. ...|..+++.++
T Consensus 256 ~gla~lLggSGfLAVFVAGl~~gn~~~~~~~~~~~~f~e~ie~LLn~~lFVlLGa~L~~~~l~~~~l~~~~w~~ilLaL~ 335 (810)
T TIGR00844 256 AGFGSMLGVDDLLVSFFAGTAFAWDGWFAQKTHESNVSNVIDVLLNYAYFVYLGSILPWKDFNNGDIGLDVWRLIILSLV 335 (810)
T ss_pred HHHHHHhccccHHHHHHHHHHHhcccchhhhHHHhhHHHHHHHHHHHHHHHHHHHhhCHhhcccchhhHHHHHHHHHHHH
Confidence 9999999999999999999999975443322 22335556678889999999999998766643 124565677777
Q ss_pred HHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHhhhhhHHHHHHhhhccCCC
Q 046529 342 GFGMSKILITFLVSLLH--KIPPKEGLALGLLMNTKGLLALIVLNTACNRKD 391 (799)
Q Consensus 342 ~~~~~K~~~~~l~~~~~--~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~i 391 (799)
+.++.|+.++++...+. ..+|+|++++|| ..+||..++.++.++++.+.
T Consensus 336 LifVrRPpaVlll~~li~~~~s~rErlFigW-FGpRGIGSIyyl~~A~~~~~ 386 (810)
T TIGR00844 336 VIFLRRIPAVLILKPLIPDIKSWREAMFIGH-FGPIGVGAVFAAILSKSQLE 386 (810)
T ss_pred HHHHHHHHHHHHHhhhcccCCCHHHHHHhee-eccccHHHHHHHHHHHHhhh
Confidence 77888988888765544 368999999999 89999999999999987654
No 13
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=99.89 E-value=9.3e-21 Score=213.40 Aligned_cols=367 Identities=16% Similarity=0.128 Sum_probs=274.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee----------eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHh
Q 046529 45 LFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE----------MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISA 114 (799)
Q Consensus 45 ~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila----------l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~ 114 (799)
..+++..+++.+..+...+.+|+..|.+.-.++. ..+++....-+.+-.+++..++|..|+|+|.+.+++
T Consensus 6 ~~~~~~~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~~~l~l~ilLf~~g~~l~~~~l~~ 85 (429)
T COG0025 6 MLLFLLLLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELFLVLFLAILLFAGGLELDLRELRR 85 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHHHHHHHHHHHHHhHhcCCHHHHHH
Confidence 4677788888889999999999999877766665 122222333444449999999999999999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHH
Q 046529 115 TGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSAL 194 (799)
Q Consensus 115 ~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~ 194 (799)
++ +..+.+++.+++++.+......+++.+ +++ +..++.+|+++|+|++.++.++.++.| .+.++.++..++++
T Consensus 86 ~~--~~I~~La~~~v~it~~~~g~~~~~l~~--~i~--~~~a~l~gAilspTDPv~v~~i~~~~~-vp~ri~~iL~gESl 158 (429)
T COG0025 86 VW--RSILVLALPLVLITALGIGLLAHWLLP--GIP--LAAAFLLGAILSPTDPVAVSPIFKRVR-VPKRIRTILEGESL 158 (429)
T ss_pred hH--HHHHHHHHHHHHHHHHHHHHHHHHHhC--Chh--HHHHHHHhHHhcCCCchhhHHHHhcCC-CCHHHHHHHHHHHH
Confidence 99 999999999999998887777777743 344 669999999999999999999998866 88999999999999
Q ss_pred HHHHHHHHHHHHHHHhhC--C-----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHH
Q 046529 195 LSDLFTWMLLLACILVSN--P-----SQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCG 267 (799)
Q Consensus 195 v~D~~~~ill~~~~~~~~--~-----~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~ 267 (799)
+||..+++++.+...... + .....++..++..+.++++...+..|+.++.....-........+.+...+..+
T Consensus 159 ~ND~~giv~f~~~l~~~~~~~~~~~~~~~~~fl~~~~~g~~~G~~iG~l~~~l~~~~~~~~~~~~~~~~~i~L~~~~~~~ 238 (429)
T COG0025 159 LNDGVGIVLFKVALAALLGTGAFSLGWALLLFLIEALGGILLGLLLGYLLGRLLRRLDRRGWTSPLLETLLTLLLAFAAY 238 (429)
T ss_pred hhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHHHH
Confidence 999999999988877643 1 111223333334444444555555555555422101135577889999999999
Q ss_pred HHHHHhchhHHHHHHHHHhhcC---C--CCCch-hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHH
Q 046529 268 FITDGCGAHSAIGAFTLGVIMP---K--KQPIT-NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLF 341 (799)
Q Consensus 268 ~~ae~~G~~~ilGaf~aGl~lp---~--~~~~~-~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~ 341 (799)
.++|.+|.+++++.+++|+... . ..+.. +...+.+......++.-+.|+..|++++....... .++.+++.++
T Consensus 239 ~~a~~l~~SGilAvvvaG~~~~~~~~~~~~~~~~~~~~~~fwe~l~~~ln~~iFiLlG~~i~~~~~~~~-~~~~~l~~~~ 317 (429)
T COG0025 239 LLAEALGVSGILAVVVAGLVLGEAVRINLSPASARLRLSSFWEVLDFLLNGLLFVLLGAQLPLSLLLAL-GLLGLLVALV 317 (429)
T ss_pred HHHHHhCcchHHHHHHHHHHHhhhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHh-hHHHHHHHHH
Confidence 9999999999999999998773 1 12212 33344455556888999999999999998877643 3566888888
Q ss_pred HHHHHHHHHHHHHHHhhC------CChHHHHHHHHHHhhhhhHHHHHHhhhccC-C-----CCCCCchhHHHHHHHHHHH
Q 046529 342 GFGMSKILITFLVSLLHK------IPPKEGLALGLLMNTKGLLALIVLNTACNR-K-----DLVDEAFPPTIFALFVMTC 409 (799)
Q Consensus 342 ~~~~~K~~~~~l~~~~~~------~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~-~-----ii~~~~f~~lv~~~lv~t~ 409 (799)
..+++|++++++..+..+ .+++|++.++| -++||.+.++++...... . .+-.-.+..+++++++.+.
T Consensus 318 ~~~v~R~~~V~~~~~~~~~~~~~~~~~~~~~~l~w-~G~RG~vsla~al~~p~~~~~~~~~~i~~i~~~vIl~Sl~v~g~ 396 (429)
T COG0025 318 AVLLARPLWVFLSLKGSNLKLRDPLPWRERLFLSW-AGPRGVVSLALALLIPLELPGPARELILFIVFLVILFSLLVQGL 396 (429)
T ss_pred HHHHHHHHHHHHHHhhccccccCCCCHHHHHHHhh-cccccHHHHHHHHHchhhccchhhhHHHHHHHHHHHHHHHHHhh
Confidence 889999999999999853 79999999999 799999999998776522 1 1222234445555555555
Q ss_pred HHHHHHHHhhh
Q 046529 410 VIEPILAATYK 420 (799)
Q Consensus 410 i~~plv~~ly~ 420 (799)
..+|+.++...
T Consensus 397 t~~~l~~~~~~ 407 (429)
T COG0025 397 TLPPLAKKLEV 407 (429)
T ss_pred hHHHHHHHhcc
Confidence 56666665443
No 14
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=99.86 E-value=2.8e-19 Score=206.86 Aligned_cols=354 Identities=14% Similarity=0.096 Sum_probs=246.5
Q ss_pred HHHHHHHHHh-ccc-CCChhhhhhee---ec------cC--CChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchh
Q 046529 55 FINHLLVAIL-KPL-RQPPIVGQILE---MF------PY--KSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKV 121 (799)
Q Consensus 55 ~~s~~~~~ll-~rl-~~P~ivg~Ila---l~------p~--~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~ 121 (799)
.++++...+. |+. ++|..+..|+. ++ +. ...-.-+.+-.+.+..++|..|+++|.+.++++. +.+
T Consensus 19 ~~~~~~~~~~~~~~~~lP~s~llil~GlllG~i~~~~~~~~~~~l~~~lf~~~~LPpIlFe~g~~l~~~~f~~n~--~~I 96 (559)
T TIGR00840 19 SLAKIGFHLTHKVIRAVPESVLLIVYGLLVGGIIKASPHIDPPTLDSSYFFLYLLPPIVLDAGYFMPQRNFFENL--GSI 96 (559)
T ss_pred HHHHHHHHHHHhhcccCCHHHHHHHHHHHHHHHHHcCCCCccCCcCHHHHHHHHHHHHHHHHHhcCCHHHHHHHH--HHH
Confidence 3334444444 344 48988887776 11 11 1112234555667888999999999999999999 999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc--C---cchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 046529 122 VSIALAGTLVPMAVGLGAFFLVIG--E---SQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLS 196 (799)
Q Consensus 122 ~~ia~~~~lip~~~g~~~~~~l~~--~---~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~ 196 (799)
+.+|+.+++++.++.....+++.. + .+++ +..++.+|+++|+|++.++..++++.+ .+.++-.++.+++++|
T Consensus 97 l~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~--~~~allfGAiiSaTDPVAVlai~~~~~-v~~~L~~ll~gESllN 173 (559)
T TIGR00840 97 LIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIG--LLDNLLFGSLISAVDPVAVLAVFEEYH-VNEKLYIIIFGESLLN 173 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccccccCCC--HHHHHHHhHHhcCCchHHHHHHHHhcC-CCcchhhheehhhhhh
Confidence 999999999998766655554321 1 1234 568999999999999999999999998 7889999999999999
Q ss_pred HHHHHHHHHHHHHhhC----C-h--HH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 046529 197 DLFTWMLLLACILVSN----P-S--QY----YEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLL 265 (799)
Q Consensus 197 D~~~~ill~~~~~~~~----~-~--~~----~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~ 265 (799)
|.++++++.++..+.. . . .+ ..++...+..++++++...+..++.|+... .+.....++++++++
T Consensus 174 DavaIVLf~~~~~~~~~~~~~~~~~~~~~~i~~f~~~~~GGiliG~v~G~l~~~l~r~~~~----~~~~e~~l~l~~~yl 249 (559)
T TIGR00840 174 DAVTVVLYNTFIKFHKTADEPVTIVDVFEGCASFFVVTCGGLLVGVVFGFLVAFITRFTHH----IRQIEPLFVFLISYL 249 (559)
T ss_pred ccHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cchhHHHHHHHHHHH
Confidence 9999999987776532 1 1 11 111111222445555666677777777632 234667788889999
Q ss_pred HHHHHHHhchhHHHHHHHHHhhcCCC-----CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHH
Q 046529 266 CGFITDGCGAHSAIGAFTLGVIMPKK-----QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVL 340 (799)
Q Consensus 266 ~~~~ae~~G~~~ilGaf~aGl~lp~~-----~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 340 (799)
++.++|.+|.|++++.+++|+++.+. .+..+.-.+.+......++..+.|+++|+.+-... ..+.|..+++.+
T Consensus 250 ~Y~lAE~l~~SGiLAvv~aGl~~~~y~~~n~s~~~~~~~~~f~~~ls~l~e~~IFvlLGl~l~~~~--~~~~~~~i~~~l 327 (559)
T TIGR00840 250 SYLFAETLHLSGILALIFCGITMKKYVEANMSRRSQTTIKYFMKMLSSLSETLIFIFLGVSLVTEN--HEWNWAFVVATL 327 (559)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHH
Confidence 99999999999999999999999642 12222222334444477888999999999763221 122455555566
Q ss_pred HHHHHHHHHHHHHHHHhh------CCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCC-----chhHHHHHHHHHHH
Q 046529 341 FGFGMSKILITFLVSLLH------KIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDE-----AFPPTIFALFVMTC 409 (799)
Q Consensus 341 ~~~~~~K~~~~~l~~~~~------~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~-----~f~~lv~~~lv~t~ 409 (799)
+++++.|+++.+..++.. +++++|.+.++| .+.||.++++++....+.+.-..+ ++.++++++++...
T Consensus 328 ~~~ll~R~l~V~~~~~~~~~~~~~~~~~~e~~il~w-~GlRGaVa~aLAl~l~~~~~~~~~~i~~~t~~VVl~TvlvqG~ 406 (559)
T TIGR00840 328 SFCVIYRVLGVRTLSWITNEFRPVEIPYKDQLVIFY-AGLRGAVAFALALLLDEKIFPYKFLFVTTTLVVVFFTVIFQGG 406 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCChhhhhheee-eccccHHHHHHHHhCCCCCcchHHHHHHHHHeeehHHHHHHHh
Confidence 667789999988776543 579999999999 799999999988755433322222 23334445555556
Q ss_pred HHHHHHHHhhh
Q 046529 410 VIEPILAATYK 420 (799)
Q Consensus 410 i~~plv~~ly~ 420 (799)
.++|+++++.-
T Consensus 407 T~~pl~~~L~l 417 (559)
T TIGR00840 407 TIKPLVEVLKV 417 (559)
T ss_pred hHHHHHHHhCC
Confidence 66888887654
No 15
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=99.85 E-value=1.3e-19 Score=192.66 Aligned_cols=360 Identities=14% Similarity=0.110 Sum_probs=288.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee--------ec--cCCChHHHHHHHHHHHHHHHHHHhhccChHHH
Q 046529 43 APLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE--------MF--PYKSVMLLETYAYIALLFYLFLIGLDMDINLI 112 (799)
Q Consensus 43 l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila--------l~--p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l 112 (799)
...+++.-.+++.++.+...+..|+|.|..+-.+.. ++ +.++.+.-..++++++++++|-.|+...++.+
T Consensus 5 ~~~ill~gsvlvivsif~s~~ssrfGvP~LllFl~iGm~aG~dGlg~I~fdNy~~Ay~vg~lALaiILfdgG~~T~lss~ 84 (574)
T COG3263 5 INLILLLGSVLVIVSIFSSLISSRFGVPLLLLFLSIGMLAGVDGLGGIEFDNYPFAYMVGNLALAIILFDGGFGTQLSSF 84 (574)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHcCCCcccccccCccHHHHHHHHHHHHHHhhcCccCCcHHHH
Confidence 334555555777888899999999999998765544 33 34567888999999999999999999999999
Q ss_pred HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHH
Q 046529 113 SATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSS 192 (799)
Q Consensus 113 ~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~ 192 (799)
|... ++++.++..|++++-.+....++++.. .+ |...+.+|++..+|+.+.+..+|.+.+ +|.+++.+..-+
T Consensus 85 r~a~--~palsLATlGVl~Ts~Ltg~aA~~ll~-l~----wle~~LiGAiVgSTDAAAVF~lL~~~n-l~erv~stLEiE 156 (574)
T COG3263 85 RVAA--GPALSLATLGVLITSGLTGVAAAYLLN-LD----WLEGLLIGAIVGSTDAAAVFSLLGGKN-LNERVASTLEIE 156 (574)
T ss_pred HHHh--hhhHHHHHHHHHHHHHHHHHHHHHHhc-cH----HHHHHHHHHhhccccHHHHHHHHccCC-hhhhhhhhEEee
Confidence 9999 999999999999998877777777664 22 569999999999999999999998887 788999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-hCC------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 046529 193 ALLSDLFTWMLLLACILV-SNP------SQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLL 265 (799)
Q Consensus 193 a~v~D~~~~ill~~~~~~-~~~------~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~ 265 (799)
+--||-.++++....+.+ ..+ ..+..++...++.++..+....+..|+++|+. -.+..|..++++..++
T Consensus 157 SGtNDPmAvfLTitlieli~~get~l~~~~ll~f~~q~glG~l~G~~gg~l~~~~Inr~n----Ld~GL~pil~la~~Ll 232 (574)
T COG3263 157 SGSNDPMAVFLTITLIELIAGGETNLSWGFLLGFLQQFGLGLLLGLGGGKLLLQLINRIN----LDSGLYPILALAGGLL 232 (574)
T ss_pred cCCCCceeeehhHHHHHHHhccccccCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhc----cccchhHHHHHHHHHH
Confidence 999999998776544444 221 12223556677778888888899999999972 2466899999999999
Q ss_pred HHHHHHHhchhHHHHHHHHHhhcCCCC-CchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHH
Q 046529 266 CGFITDGCGAHSAIGAFTLGVIMPKKQ-PITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFG 344 (799)
Q Consensus 266 ~~~~ae~~G~~~ilGaf~aGl~lp~~~-~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~ 344 (799)
.+.+++.+|-|++++.+++|+.+.|.+ ...+.+.+..+.+ .++..-+.|...|+...++.+... ....+++.+.+.+
T Consensus 233 ~fs~t~aiGGsG~LaVYl~Gll~GN~~i~~r~~I~~f~dG~-twlaQI~MFlvLGLLvtPsql~~i-avPailL~l~mif 310 (574)
T COG3263 233 IFSLTGAIGGSGILAVYLAGLLLGNRPIRARHGILRFFDGL-AWLAQILMFLVLGLLVTPSQLLPI-AIPAILLSLWMIF 310 (574)
T ss_pred HHHHHHHhcCcccHHHHHHHHHhCCCcchhHHHHHHHhccH-HHHHHHHHHHHHHHhcCHhhhhHh-hHHHHHHHHHHHH
Confidence 999999999999999999999999743 2446677888888 789999999999999998877643 4555677777888
Q ss_pred HHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCc-hhHHHHHHHHHHHHHHHHHHH
Q 046529 345 MSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEA-FPPTIFALFVMTCVIEPILAA 417 (799)
Q Consensus 345 ~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~-f~~lv~~~lv~t~i~~plv~~ 417 (799)
+.|.+++|+...-++.+++|.+.++| -.-||.+.++++..-.-.|.-+.+. |++..+.++++-.+-+..+.+
T Consensus 311 vaRP~aV~l~l~Pfrf~~~Ek~fvSW-vGLRGAv~IilAifpm~aglena~l~FNvAF~VVLvSlliQG~tl~~ 383 (574)
T COG3263 311 VARPLAVFLGLIPFRFNRREKLFVSW-VGLRGAVPIILAIFPMMAGLENARLFFNVAFFVVLVSLLIQGSTLPW 383 (574)
T ss_pred HHhHHHHHHhhcccccCccchheeeh-hhcccchhhhHhhhHHhcCCccceEEeehhHHHHHHHHHHccCcchH
Confidence 99999999999999999999999999 7999999999999888777766554 444444444433333344443
No 16
>PRK14853 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.78 E-value=1.8e-16 Score=174.29 Aligned_cols=302 Identities=16% Similarity=0.207 Sum_probs=196.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHH
Q 046529 87 LLETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVA 162 (799)
Q Consensus 87 ~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ 162 (799)
..+.+.+.=+.+|.|.+|+|++.+.+...... || ...-++.|+++|.++-..+ ..+. ....-.+ .+
T Consensus 62 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~~~a~lP~~aAlGGm~vPaliy~~~----n~~~-----~~~~~GW-~I 131 (423)
T PRK14853 62 LGTWAADGLLAIFFFVVGLELKREFVAGDLRDPSRAALPVAAALGGMIVPALIYVAV----NLAG-----GGALRGW-AI 131 (423)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhHHHhccchhhHHHHHHHHHHHHHhHHHHHHHHHHH----hCCc-----hhhhhhh-hh
Confidence 33444455567789999999965543221100 22 3467888999997654333 2210 0111222 23
Q ss_pred HhhccHHHHHHHHHhcccc-CChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 163 LTATNFQELTQILTDLRIL-HLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVF 241 (799)
Q Consensus 163 ls~Ts~pvv~~iL~elkl~-~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~ 241 (799)
-+.|+.+....+|..+|-. ++.++...++.|++||+.++++++++++-.- +..+.......+ +++ |+.
T Consensus 132 p~ATDIAFalgvLallG~rvp~~l~~FLlaLAIvDDl~AIiVIAlfYt~~i-~~~~L~~a~~~~--~~l--------~~l 200 (423)
T PRK14853 132 PTATDIAFALAVLAVIGTHLPSALRTFLLTLAVVDDLLAITVIAVFYTSEL-NLEALLLALVPL--ALF--------WLL 200 (423)
T ss_pred hhhhHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHhhheccCCCC-CHHHHHHHHHHH--HHH--------HHH
Confidence 3467788888999998754 8899999999999999999999998873211 222222211111 111 223
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-----------CchhHHHHHHhhhhhhhh
Q 046529 242 CSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQ-----------PITNTFKDKLDDFLVSSG 310 (799)
Q Consensus 242 ~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~-----------~~~~~l~~kl~~~~~~l~ 310 (799)
++ +++++.+.++++. +++.+..+..|+|+.+|+|++|+++|..+ +..+++++++++++..++
T Consensus 201 ~~-----~~V~~~~~Y~ilg--~~lW~~~~~sGiHatiAGvllGl~IP~~~~~~~~~~~~~~~p~~rle~~L~p~V~~~I 273 (423)
T PRK14853 201 VQ-----KRVRKWWLLLPLG--VATWILVHESGVHATVAGVLLGFAVPVLRREGEEGPEAGPGLAEHLEHRLRPLSAGVA 273 (423)
T ss_pred HH-----cCCchhhHHHHHH--HHHHHHHHHhCCCHHHHHHHHHHhcccccccccccccccCCHHHHHHHHHHHHHHHHH
Confidence 33 2355566666664 35667889999999999999999999411 335789999999999999
Q ss_pred hhHH-HHHhhhcccc-ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-h
Q 046529 311 LPGF-FLLTGFRSNL-VVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-L 377 (799)
Q Consensus 311 lPlF-F~~~Gl~idl-~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~ 377 (799)
+|+| |+..|.++|. ..+.+...-.....+++..++||.+|.+..+++. +++|++-..+|+ ++.-| +
T Consensus 274 LPLFAFANaGV~l~~~~~~~~~~~~pv~lgI~lgL~vGK~lGI~~~~~l~~k~~~~~lP~~~~~~~l~gv~~-L~GIGFT 352 (423)
T PRK14853 274 VPVFAFFSAGVAIGGLSGLGAALTDPIVLGVVLGLVVGKPIGIFGTTYLLTKFTRASLDDDLTWIDVFGVAL-LAGIGFT 352 (423)
T ss_pred HHHHHHHHhhheecCchhHHHHhhchHHHHHHHHHHHHhHHHHHHHHHHHHHhCcCCCCCCCCHHHHHHHHH-HHHHHHH
Confidence 9999 9999999986 4342211112567788888999999988888766 678999999999 55555 8
Q ss_pred HHHHHHhhhcc-CCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 046529 378 LALIVLNTACN-RKDLVDEAFPPTIFALFVMTCVIEPILAA 417 (799)
Q Consensus 378 v~l~~~~~~~~-~~ii~~~~f~~lv~~~lv~t~i~~plv~~ 417 (799)
+++.+.+.+++ .....++.-..+.+.+++...+..-+++.
T Consensus 353 mSlFI~~LAf~~~~~~~~~aKigil~~S~~s~~~G~~~l~~ 393 (423)
T PRK14853 353 VSLLIGELAFGGGSARDDAVKVGVLTGSLIAALLASVLLRL 393 (423)
T ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999994 22222333333344445533333333443
No 17
>TIGR00773 NhaA Na+/H+ antiporter NhaA. These proteins are members of the NhaA Na+:H+ Antiporter (NhaA) Family (TC. 2.A.33). The Escherichia coli NhaA protein probably functions in the regulation of the internal pH when the external pH is alkaline. It also uses the H+ gradient to expel Na+ from the cell. Its activity is highly pH dependent. Only the E. coli protein is functionally and structurally well characterized.
Probab=99.58 E-value=3.1e-13 Score=146.15 Aligned_cols=270 Identities=19% Similarity=0.214 Sum_probs=173.8
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcC---cchhhhhhHHHHH
Q 046529 87 LLETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGE---SQEFITQGGYMFC 159 (799)
Q Consensus 87 ~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~---~~~~~~~~~~l~l 159 (799)
....+.+.=+.+|.|.+|+|++.+.+....+. || ...-++.|+++|.++-..+-. ..+ .+|. .+.+.-+
T Consensus 52 l~~wiNDgLMaiFFf~vGlEiKrE~~~GeL~~~~~a~lP~~aA~GGm~vPa~iy~~~n~--~~~~~~~GW~--IP~ATDi 127 (373)
T TIGR00773 52 LLHWINDGLMAVFFLLIGLEVKRELLEGALSSLRQAIFPVIAAIGGMIAPALIYLAFNA--NDPITREGWA--IPAATDI 127 (373)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCccc--cccHHHH
Confidence 34444455567789999999988776432200 33 345678889999765433321 111 2343 2222222
Q ss_pred HHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 160 AVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSW 239 (799)
Q Consensus 160 ~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~ 239 (799)
+.++.+ ..+-- +-.+..+....++-|++||+.++++++++++-.- +..|......++. + .|
T Consensus 128 AFalgv-------lallG-~~vP~~lr~FLl~LAIvDDlgaI~vIA~FYt~~i-~~~~L~~a~~~~~-~---------l~ 188 (373)
T TIGR00773 128 AFALGV-------MALLG-KRVPLALKIFLLALAIIDDLGAIVIIALFYTNDL-SMAALLVAAVAIA-V---------LA 188 (373)
T ss_pred HHHHHH-------HHHhc-CCCCHHHHHHHHHHHHHHHHhhHhheeeecCCCC-CHHHHHHHHHHHH-H---------HH
Confidence 222222 11111 2366677889999999999999999887774211 2223322221111 1 12
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCch----hHHHHHHhhhhhhhhhhHH-
Q 046529 240 VFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPIT----NTFKDKLDDFLVSSGLPGF- 314 (799)
Q Consensus 240 l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~----~~l~~kl~~~~~~l~lPlF- 314 (799)
+.+|. ..++...+..+..++..+. ...|+|+++|+|++|+++|+..+.. +++++.+++.+..+++|+|
T Consensus 189 ~~~~~-----~v~~~~~y~~lgvllW~~~--~~sGVHatiaGvllGl~iP~~~~~~~~pl~rleh~L~p~v~~lilPlFA 261 (373)
T TIGR00773 189 VLNRC-----GVRRLGPYMLVGVILWFAV--LKSGVHATLAGVIIGFFIPLKGKKGESPLKRLEHVLHPWVAYLILPLFA 261 (373)
T ss_pred HHHHc-----CCchhhHHHHHHHHHHHHH--HHcCCcHHHHHHHHeeeecccccCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 33442 2444555555444333333 6999999999999999999754433 4566666777889999999
Q ss_pred HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-hHHHHHH
Q 046529 315 FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-LLALIVL 383 (799)
Q Consensus 315 F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~~~ 383 (799)
|+..|.++|...+... .......+++..+++|.+|++..+++. +++|++-..+|+ ++.-| ++++.+.
T Consensus 262 FanAGv~l~~~~~~~~-~~~v~lgI~lgLvvGK~lGI~~~~~l~~kl~~~~lP~~~~w~~~~gv~~-L~GIGFTmSlfI~ 339 (373)
T TIGR00773 262 FANAGVSLQGVSLNGL-TSMLPLGIILGLLIGKPLGIFLFSWIAVKLKLAKLPEGINFKQIFAVGV-LCGIGFTMSIFIA 339 (373)
T ss_pred HHhcCeeeecCcchhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHH
Confidence 9999999987554332 233477888888999999999998876 678999999999 55555 8999999
Q ss_pred hhhcc
Q 046529 384 NTACN 388 (799)
Q Consensus 384 ~~~~~ 388 (799)
+.+++
T Consensus 340 ~LAf~ 344 (373)
T TIGR00773 340 SLAFG 344 (373)
T ss_pred HHhcC
Confidence 99984
No 18
>PRK11175 universal stress protein UspE; Provisional
Probab=99.56 E-value=1.3e-13 Score=149.64 Aligned_cols=280 Identities=14% Similarity=0.113 Sum_probs=165.0
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHH-HH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKA-FE 520 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a-f~ 520 (799)
-|||+|++..++....++.+..++...+. +++++|+++-.....+....... +.+......+..++.++. .+
T Consensus 4 ~~ILv~~D~s~~~~~al~~a~~lA~~~~a--~l~ll~v~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~~~~~ 76 (305)
T PRK11175 4 QNILVVIDPNQDDQPALRRAVYLAQRNGG--KITAFLPIYDFSYEMTTLLSPDE-----REAMRQGVISQRTAWIREQAK 76 (305)
T ss_pred ceEEEEcCCCccccHHHHHHHHHHHhcCC--CEEEEEeccCchhhhhcccchhH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 36999999999999999998888765543 56888987533221110000000 000000000112222222 22
Q ss_pred HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEEc
Q 046529 521 NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVD 600 (799)
Q Consensus 521 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvd 600 (799)
.+. ..+++++...... .+.++.|++.|+++++||||+|+|++....+.+ +++..+++++++||||.++-+
T Consensus 77 ~~~---~~~~~~~~~v~~~--g~~~~~i~~~a~~~~~DLiV~G~~~~~~~~~~~-----~gs~~~~l~~~~~~pvlvv~~ 146 (305)
T PRK11175 77 PYL---DAGIPIEIKVVWH--NRPFEAIIQEVIAGGHDLVVKMTHQHDKLESVI-----FTPTDWHLLRKCPCPVLMVKD 146 (305)
T ss_pred HHh---hcCCceEEEEecC--CCcHHHHHHHHHhcCCCEEEEeCCCCcHHHhhc-----cChhHHHHHhcCCCCEEEecc
Confidence 222 1456666654432 478999999999999999999999875444433 667788999999999976543
Q ss_pred CCCCCCcccccccccccccceEEEeccCCcch-------HHHHHHHHHHhhCC-CeEEEEEEeecCCCCCccccccCCcc
Q 046529 601 RGLGSDEDKESQLKDHHGIQHLLMLFLGGPDD-------REALAYAWRMAAHP-NVKLTVVRFLPGKDPRTVLHQKHNSE 672 (799)
Q Consensus 601 Rg~~~~~~~~~~~~~~~~~~~I~v~f~GG~dd-------reAL~~A~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~ 672 (799)
+... ... +|++++.|++++ +.|+++|.++|+.. +++++++|+.+..... .. .++.
T Consensus 147 ~~~~----------~~~---~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~a~l~ll~v~~~~~~~---~~-~~~~ 209 (305)
T PRK11175 147 QDWP----------EGG---KILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNHAEVHLVNAYPVTPIN---IA-IELP 209 (305)
T ss_pred cccC----------CCC---eEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcCCceEEEEEecCcchh---cc-cccc
Confidence 2111 113 899999987653 67999999999887 9999999997532210 00 0000
Q ss_pred --ccccchhh---cHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcC
Q 046529 673 --VARCTEKQ---ADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLD 745 (799)
Q Consensus 673 --~~~~~e~~---~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~ 745 (799)
..++.+++ .-++.++++..+.. +...+..+..|. ....|.+. +.+.||+|+|.++. .|+.
T Consensus 210 ~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~~~------~~~~-- 276 (305)
T PRK11175 210 EFDPSVYNDAIRGQHLLAMKALRQKFG----IDEEQTHVEEGL-PEEVIPDLAEHLDAELVILGTVGR------TGLS-- 276 (305)
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHhC----CChhheeeccCC-HHHHHHHHHHHhCCCEEEECCCcc------CCCc--
Confidence 00011111 11234455544321 111122233332 22333322 45799999999865 2333
Q ss_pred CCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 746 NLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 746 ~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.-=+|-..+-++.. ++++||||.
T Consensus 277 ----~~llGS~a~~v~~~---~~~pVLvv~ 299 (305)
T PRK11175 277 ----AAFLGNTAEHVIDH---LNCDLLAIK 299 (305)
T ss_pred ----ceeecchHHHHHhc---CCCCEEEEc
Confidence 33478888888864 778999995
No 19
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=99.56 E-value=1.8e-13 Score=153.03 Aligned_cols=370 Identities=14% Similarity=0.154 Sum_probs=242.2
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcccC---CChhhhhh-----ee----eccCCChH------H--HHHHHHHHHHHHHH
Q 046529 42 YAPLFLIQLAYVLFINHLLVAILKPLR---QPPIVGQI-----LE----MFPYKSVM------L--LETYAYIALLFYLF 101 (799)
Q Consensus 42 ~l~~~l~qi~lil~~s~~~~~ll~rl~---~P~ivg~I-----la----l~p~~~~~------~--l~~la~lGli~~lF 101 (799)
..+++++. .+++++.+..+++++-| +|.-+.-+ ++ ..+..... . -+.+-.+=+--+.|
T Consensus 34 ~~al~~~i--~lL~l~iv~~hll~~~R~~~l~Esv~~l~iGl~vG~vi~~~~~~~s~~~~~~~~f~~~~ff~vLLPpiif 111 (575)
T KOG1965|consen 34 SVALLFFI--LLLVLCIVLGHLLEETRFRWLPESVAALFIGLLVGLVIRYSSGGKSSRGKRILVFSPDLFFLVLLPPIIF 111 (575)
T ss_pred hhhHHHHH--HHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHhhhcCCCcccccceeEEecccHHHHHhhchhhh
Confidence 34444333 34556678888898887 77644333 22 22211111 0 01233333455789
Q ss_pred HHhhccChHHHHhcCCCchhhHHHHHHHHHHHH-HHHHHHHHHhc--CcchhhhhhHHHHHHHHHhhccHHHHHHHHHhc
Q 046529 102 LIGLDMDINLISATGMTNKVVSIALAGTLVPMA-VGLGAFFLVIG--ESQEFITQGGYMFCAVALTATNFQELTQILTDL 178 (799)
Q Consensus 102 l~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~-~g~~~~~~l~~--~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~el 178 (799)
..|.+++.+.++++. .....+++.|..+... +|.++.++... ..+++ +..++++|+.+|.|++..+..++.|+
T Consensus 112 ~sgy~l~k~~fF~n~--~si~~fa~~Gt~IS~~~ig~gv~~~~~~~~~~~~~--f~d~L~fGaliSATDPVtvLaIfnel 187 (575)
T KOG1965|consen 112 NSGYSLKKKQFFRNI--GSILLFAIFGTFISAVIIGAGVYLLGFGLLIYDLS--FKDCLAFGALISATDPVTVLAIFNEL 187 (575)
T ss_pred cccceechhhhhhhh--HHHHHhhhcceeeehhHHhhHHHHHhccccccccc--HHHHHHHhhHhcccCchHHHHHHHHh
Confidence 999999999999999 9999999988777644 45555544222 23455 77999999999999999999999999
Q ss_pred cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC-C----h---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC
Q 046529 179 RILHLDIGRIALSSALLSDLFTWMLLLACILVSN-P----S---QYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNN 250 (799)
Q Consensus 179 kl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~-~----~---~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~ 250 (799)
+ ....+=.++-+++++||..+++++..+..... + . .+..++........++...+.+-..+.|.+.-+ +
T Consensus 188 ~-vd~~Ly~LVFGESvLNDAvsIVlf~~i~~~~~~~~~~~~~~~~ig~Fl~~F~gS~~lGv~~GlisA~~lK~~~l~--~ 264 (575)
T KOG1965|consen 188 G-VDPKLYTLVFGESVLNDAVSIVLFNTIQKFQLGSLNDWTAFSAIGNFLYTFFGSLGLGVAIGLISALVLKFLYLR--R 264 (575)
T ss_pred C-CCcceeeeeecchhccchhHHHHHHHHHHHccCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C
Confidence 8 56677789999999999999999988877644 1 1 222222222222333333444444445554322 2
Q ss_pred CCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-----CchhHHHHHHhhhhhhhhhhHHHHHhhhc-ccc
Q 046529 251 LSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQ-----PITNTFKDKLDDFLVSSGLPGFFLLTGFR-SNL 324 (799)
Q Consensus 251 ~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~-----~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~-idl 324 (799)
....+..+.+++....+++||.+|+++++..+..|+.+++-. +..+.-.+.+-.+...+.--+-|+++|+. ++.
T Consensus 265 ~~~lE~al~ll~sY~sY~lAE~~~lSGIvtVlFcGI~msHYt~~NlS~~Sqit~kh~f~~lsflAEtfIF~Y~Gl~~f~~ 344 (575)
T KOG1965|consen 265 TPSLESALMLLMSYLSYLLAEGCGLSGIVTVLFCGIVMSHYTYHNLSGESQITTKHFFRTLSFLAETFIFIYLGLSAFDF 344 (575)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence 455778899999999999999999999999999999998532 22333333333334677778889999973 343
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCC----------ChHHHHHHHHHHhhhhhHHHHHHhhhc-cC----
Q 046529 325 VVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKI----------PPKEGLALGLLMNTKGLLALIVLNTAC-NR---- 389 (799)
Q Consensus 325 ~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~----------~~~e~~~lgl~l~~kG~v~l~~~~~~~-~~---- 389 (799)
...... ...++....++.+++|..-.+-.+.+.+. |.++-..++|.-..||.++++++.--. +.
T Consensus 345 ~k~~~~-~~~fv~~~~vlV~lgRa~nvfPLs~L~N~~rr~k~~~~i~~~~q~~~~w~g~lRGAvs~ALa~~~~~~~~~~~ 423 (575)
T KOG1965|consen 345 QKHVYK-SLQFVFGAGVLVLLGRAANVFPLSFLLNLFRRHKECDLIDDKYQVIMWWAGGLRGAVSFALALGDFTDSPHTG 423 (575)
T ss_pred cceeee-chHHHHHHHHHHHHHHHHHhccHHHHHHHHhccccccccChHHhhHhHhhhhhhHHHHHHHHhhhcccccccc
Confidence 333221 12345666667778888887777766643 444456677755589999998875432 11
Q ss_pred -CCCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046529 390 -KDLVDEAFPPTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 390 -~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
+.+-..+..++++.+++....+.|+++++-..
T Consensus 424 ~q~i~tttl~vVlfT~lv~Gg~T~pml~~L~~~ 456 (575)
T KOG1965|consen 424 GQTIFTTTLVVVLFTVLVFGGSTKPMLSYLMIS 456 (575)
T ss_pred ccEEEEeeeeeeeeeeeeeCCccHHHHHHhccc
Confidence 33334444555556666667789999987643
No 20
>KOG4505 consensus Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=99.39 E-value=4.7e-11 Score=123.79 Aligned_cols=292 Identities=16% Similarity=0.151 Sum_probs=212.4
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHh
Q 046529 85 VMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALT 164 (799)
Q Consensus 85 ~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls 164 (799)
......++.+-+..=.|.+++|+.-..+.+++ +...++-+.-+++-+++.+.+.+.+.++ .+ ...++.+++.++
T Consensus 68 d~it~ei~RvvLcvqvfava~eLPr~Y~l~~w--~Si~vlllpVmi~gwlvs~~fvy~l~p~--ln--f~~Sl~iaaCiT 141 (467)
T KOG4505|consen 68 DYITYEISRVVLCVQVFAVAMELPRAYMLEHW--RSIFVLLLPVMIIGWLVSFGFVYALIPN--LN--FLTSLLIAACIT 141 (467)
T ss_pred chhhhhhhhhhHhHHHHHHHHhccHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHhcc--cc--HHHHHHHHHHcc
Confidence 34556788888888999999999999999999 8887776666666666666666666542 22 668899999999
Q ss_pred hccHHHHHHHHHhccc---cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC--C-----------hHHHHHHHHHHHHHH
Q 046529 165 ATNFQELTQILTDLRI---LHLDIGRIALSSALLSDLFTWMLLLACILVSN--P-----------SQYYEVLSTVGFILI 228 (799)
Q Consensus 165 ~Ts~pvv~~iL~elkl---~~s~~g~lals~a~v~D~~~~ill~~~~~~~~--~-----------~~~~~~~~~~~~~~~ 228 (799)
+|++...+.+..+-+. .+.++..+..+++-.||..++.++-+..-+.. + ..++.-...+.+..+
T Consensus 142 aTDPiLsssIV~~g~~akrvPeriR~lL~AESGcNDGMaipflflai~Ll~h~~~r~~~rdwv~~~iLyec~fg~llG~v 221 (467)
T KOG4505|consen 142 ATDPILSSSIVGGGKFAKRVPERIRNLLAAESGCNDGMAIPFLFLAIDLLRHKPRRKAGRDWVCDNILYECFFGCLLGCV 221 (467)
T ss_pred CCchhHHHHHhcCchHhhhChHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCchhccCCceehhHHHHHHHHHHHHHHH
Confidence 9996666666665444 44566678899999999999998877776532 1 112222222334445
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHH-HHhhhhh
Q 046529 229 CVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKD-KLDDFLV 307 (799)
Q Consensus 229 ~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~-kl~~~~~ 307 (799)
++++.|..+++--++. --..|+++.+-+.+++.|+.+.+.+|.+-.+-.|.||.+++.+..+..+..| ++..+..
T Consensus 222 IG~l~r~~lk~aekkr----lid~eSfl~~~vvl~lfc~gigtiiGvddLl~sFfAGi~Fswd~wFsk~t~~s~v~~viD 297 (467)
T KOG4505|consen 222 IGYLSRQGLKFAEKKR----LIDRESFLIFYVVLALFCMGIGTIIGVDDLLVSFFAGIVFSWDEWFSKKTKESRVSEVID 297 (467)
T ss_pred HHHHHHHHHHHHHHhc----cccHHHHHHHHHHHHHHHhhhhheechhHHHHHHHhhhhcchhHHhhhhhhhccHHHHHH
Confidence 5556565555544432 3357889999999999999999999999999999999999987777665544 5667777
Q ss_pred hhhhhHHHHHhhhccccccccCch----hHHHHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHhhhhhHHHH
Q 046529 308 SSGLPGFFLLTGFRSNLVVFSSHK----PWMFVLVVLFGFGMSKILITFLVSLLH--KIPPKEGLALGLLMNTKGLLALI 381 (799)
Q Consensus 308 ~l~lPlFF~~~Gl~idl~~l~~~~----~~~~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~e~~~lgl~l~~kG~v~l~ 381 (799)
.++--.||++.|..++++.++... .|-.+++-+.+.+.-|+-++++.-.+. =.+|||++.+|. .+|.|.-++.
T Consensus 298 ~lls~sfF~yfGaiipwsqFn~s~~gl~vwrlvilsi~iif~RRip~v~l~kp~iPdikswkEALFvGh-FGPIGVgAly 376 (467)
T KOG4505|consen 298 LLLSLSFFLYFGAIIPWSQFNLSVEGLPVWRLVILSITIIFIRRIPAVYLMKPLIPDIKSWKEALFVGH-FGPIGVGALY 376 (467)
T ss_pred HHHHHHHHHHhccccchhhcCCcccCchHHHHHHHHHHHHHhcccceEEEeccCCcchhhHHHHHHhcc-CCCccHHHHH
Confidence 788889999999999988775431 344444444444555665555543322 137999999999 8999999988
Q ss_pred HHhhhc
Q 046529 382 VLNTAC 387 (799)
Q Consensus 382 ~~~~~~ 387 (799)
.+..+.
T Consensus 377 ~allar 382 (467)
T KOG4505|consen 377 YALLAR 382 (467)
T ss_pred HHHHHH
Confidence 887765
No 21
>PRK14856 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.35 E-value=1.1e-10 Score=128.19 Aligned_cols=287 Identities=18% Similarity=0.171 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhc--CcchhhhhhHHHHH
Q 046529 86 MLLETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIG--ESQEFITQGGYMFC 159 (799)
Q Consensus 86 ~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~--~~~~~~~~~~~l~l 159 (799)
.....+.+.-+.+|.|.+|+|++-+.+....+. || ...-|+.|+++|.++-..+.. .. ..+|. .+.+.-+
T Consensus 67 sl~~wINDgLMaiFFf~VGLEIKrE~~~GeLs~~rka~lPi~AAlGGmivPAlIY~~~n~--~~~~~~GWg--IPmATDI 142 (438)
T PRK14856 67 SLHNWIDDVLMALFFLMIGLEIKRELLFGELSSFKKASFPVIAALGGMIAPGLIYFFLNA--DTPSQHGFG--IPMATDI 142 (438)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHhccHHHHHHHhheec--CCCccCccc--cccHHHH
Confidence 334445555567899999999987776432200 23 345677889999764333321 11 12343 2222222
Q ss_pred HHHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 160 AVALTATNFQELTQILTDL-RILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALS 238 (799)
Q Consensus 160 ~~~ls~Ts~pvv~~iL~el-kl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 238 (799)
+.++ .++.=+ +-.+..+....++-|++||+.++++++++++-.- ...|..+...++.++
T Consensus 143 AFAl---------gvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i-~~~~L~~a~~~~~~l---------- 202 (438)
T PRK14856 143 AFAL---------GVIMLLGKRVPTALKVFLITLAVADDLGAIVVIALFYTTNL-KFAWLLGALGVVLVL---------- 202 (438)
T ss_pred HHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHhhhHhheeeecCCCC-cHHHHHHHHHHHHHH----------
Confidence 2222 222112 2256677788999999999999999887774211 233333322222111
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCc------------------------
Q 046529 239 WVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPI------------------------ 294 (799)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~------------------------ 294 (799)
++.+|. .++....++++.+++..+.. ..|+|+.+++.++|+++|-.++.
T Consensus 203 ~~ln~~-----~v~~~~~Y~~~G~~lW~~~l--~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (438)
T PRK14856 203 AVLNRL-----NVRSLIPYLLLGVLLWFCVH--QSGIHATIAAVVLAFMIPVKIPKDSKNVELLELGKRYAETSSGALLT 275 (438)
T ss_pred HHHHHc-----CCccccHHHHHHHHHHHHHH--HccCcHHHHHHHHHheeecccccccchhhhhhhhhhhhccccccccc
Confidence 223332 14445556666655554444 78999999999999999953322
Q ss_pred --------------------hhHHHHHHhhhhhhhhhhHH-HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHH
Q 046529 295 --------------------TNTFKDKLDDFLVSSGLPGF-FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFL 353 (799)
Q Consensus 295 --------------------~~~l~~kl~~~~~~l~lPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l 353 (799)
.+++++.+.+.+..+.+|+| |...|..++...... .-.....+++..++||.+|.+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~pl~rleh~L~p~v~f~IlPlFAfaNAGV~l~~~~~~~--~~pv~lGI~~GLvvGK~lGI~~ 353 (438)
T PRK14856 276 KEQQEILHSIEEKASALQSPLERLEHFLAPISGYFIMPLFAFANAGVSVDSSINLE--VDKVLLGVILGLCLGKPLGIFL 353 (438)
T ss_pred cchhhhhhhhhhcccccCCHHHHHHHhhhhhhHHhhHHHHHhhcCCceeccchhhc--cCcHHHHHHHHHHhcchHHHHH
Confidence 13466777888888999999 889999987542211 1234566777778999999998
Q ss_pred HHHhh----------CCChHHHHHHHHHHhhhh-hHHHHHHhhhccC--CCCCCCchhHHHHHHHH
Q 046529 354 VSLLH----------KIPPKEGLALGLLMNTKG-LLALIVLNTACNR--KDLVDEAFPPTIFALFV 406 (799)
Q Consensus 354 ~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~~~~~~~~~--~ii~~~~f~~lv~~~lv 406 (799)
.+++. +++|++-..+|+ ++.-| ++++.+.+.+++. ....++.-..+.+.+++
T Consensus 354 ~s~lavkl~~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~~~~~~~~~aKigIL~gS~l 418 (438)
T PRK14856 354 ITFISEKLKITARPKGISWWHILGAGL-LAGIGFTMSMFISNLAFTSEHKDAMEVAKIAILLGSLI 418 (438)
T ss_pred HHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Confidence 88766 678999888998 55555 8999999999943 32333333334444455
No 22
>PRK09560 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.29 E-value=6.2e-10 Score=120.75 Aligned_cols=269 Identities=16% Similarity=0.193 Sum_probs=170.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcC---cchhhhhhHHHHHH
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGE---SQEFITQGGYMFCA 160 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~---~~~~~~~~~~l~l~ 160 (799)
.+.+.+.=+.+|.|.+|+|++-+.+....+. || .+.-|+.|+++|.++-+.+.. +.+ .+|. .+.+.-++
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lPi~AAlGGmivPAlIy~~~n~--g~~~~~~GWg--IPmATDIA 135 (389)
T PRK09560 60 LHWINDGLMAVFFLLVGLEIKRELLEGQLSSWQQRILPAIAAVGGMVVPALIYAAFNY--NNPETLRGWA--IPAATDIA 135 (389)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCcccCccc--cccHHHHH
Confidence 3344444457788999999987776432200 23 356778889999765443322 111 2343 22222222
Q ss_pred HHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 161 VALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWV 240 (799)
Q Consensus 161 ~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l 240 (799)
.++.+- + ++. +-.+..+....++-|++||+.++++++++++-.- +..|......++.++ ++
T Consensus 136 FAlgvL-----~-llG--~rvP~~Lr~FLlaLAIvDDlgAI~VIA~FYt~~i-~~~~L~~a~~~~~~l----------~~ 196 (389)
T PRK09560 136 FALGVL-----A-LLG--KRVPVSLKVFLLALAIIDDLGAIVIIALFYTSDL-SLPALALAAIAIAVL----------FL 196 (389)
T ss_pred HHHHHH-----H-Hhc--CCCCHHHHHHHHHHHHHHhhhhHhheeeecCCCC-CHHHHHHHHHHHHHH----------HH
Confidence 222211 1 221 2256677889999999999999998887774211 223332222211111 22
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCc------hhHHHHHHhhhhhhhhhhHH
Q 046529 241 FCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPI------TNTFKDKLDDFLVSSGLPGF 314 (799)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~------~~~l~~kl~~~~~~l~lPlF 314 (799)
.+|. ..+....++.+..++..++. ..|+|+.++..++|+++|...+. .+++++++++++..+.+|+|
T Consensus 197 ln~~-----~v~~~~~Y~~~G~~lW~~~l--~SGvHaTiAGV~la~~iP~~~~~~~~~~pl~rleh~L~p~v~~~IlPlF 269 (389)
T PRK09560 197 LNRL-----GVTKLTPYLIVGAILWFAVL--KSGVHATLAGVVLAFCIPLKGKKGDEESPLHHLEHALHPWVAFAILPLF 269 (389)
T ss_pred HHHc-----CCccchHHHHHHHHHHHHHH--HccccHHHHHHHHHHhccccCCCCCCCCHHHHHHHHhhhhhhhhhHHHH
Confidence 3332 24555666666655554444 78999999999999999963322 35788999999888889999
Q ss_pred -HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-hHHHHH
Q 046529 315 -FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-LLALIV 382 (799)
Q Consensus 315 -F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~~ 382 (799)
|...|..++-..+... .-.....+++..++||.+|.+..+++. +++|++-..+|+ ++.-| ++++.+
T Consensus 270 AlaNAGV~l~~~~~~~~-~~pv~~gI~~GLv~GK~lGI~~~s~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFI 347 (389)
T PRK09560 270 AFANAGVSLAGISLSSL-TSPVPLGIALGLFLGKQVGVFGFSWLAVKLGLAKLPEGANWKQIYGVSV-LCGIGFTMSLFI 347 (389)
T ss_pred HhhcCCeeecCCcHHhc-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHH
Confidence 8889988843222221 112456677778899999999888766 678999888998 45555 899999
Q ss_pred Hhhhcc
Q 046529 383 LNTACN 388 (799)
Q Consensus 383 ~~~~~~ 388 (799)
++.++.
T Consensus 348 a~LAF~ 353 (389)
T PRK09560 348 GSLAFG 353 (389)
T ss_pred HHhhcC
Confidence 999983
No 23
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=99.28 E-value=3.6e-11 Score=113.21 Aligned_cols=131 Identities=17% Similarity=0.327 Sum_probs=100.3
Q ss_pred eEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENY 522 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 522 (799)
|||+|++++++...+++.+..+++..+ ..++++|+++.+....+ +.. + ...+..++.++.+.+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~--~~v~ll~v~~~~~~~~~----~~~-------~---~~~~~~~~~~~~~~~~ 64 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQN--GEIIPLNVIEVPNHSSP----SQL-------E---VNVQRARKLLRQAERI 64 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCC--CeEEEEEEEecCCCCCc----chh-------H---HHHHHHHHHHHHHHHH
Confidence 699999999999999999999997643 57899999987654321 111 0 0124456677766666
Q ss_pred HHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 523 EKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 523 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
... .++.+++.+..+ .+..++||+.|++.++|+|+||+|+++...+.+ +++.+++|++++||||.|+
T Consensus 65 ~~~--~g~~~~~~~~~~--~~~~~~I~~~a~~~~~dlIV~G~~~~~~~~~~~-----lGs~~~~v~~~~~~pvlvv 131 (132)
T cd01988 65 AAS--LGVPVHTIIRID--HDIASGILRTAKERQADLIIMGWHGSTSLRDRL-----FGGVIDQVLESAPCDVAVV 131 (132)
T ss_pred hhh--cCCceEEEEEec--CCHHHHHHHHHHhcCCCEEEEecCCCCCcccee-----cCchHHHHHhcCCCCEEEe
Confidence 554 467777777665 378999999999999999999999887654333 7788999999999999865
No 24
>PRK14854 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.26 E-value=1.5e-09 Score=117.05 Aligned_cols=272 Identities=18% Similarity=0.179 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhhhHHHHHHHH
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIG-ESQEFITQGGYMFCAVA 162 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~-~~~~~~~~~~~l~l~~~ 162 (799)
.+.+.+.=+.+|.|.+|+|++.+.+....+. || ...-++.|+++|.++-..+..- .. ..+|. .+.+.-++.+
T Consensus 57 ~~WiNDgLMaiFFf~vGLEiKrE~~~GeLs~~r~a~lP~~AAlGGmivPAlIy~~~n~~-~~~~~GW~--IP~ATDIAFA 133 (383)
T PRK14854 57 MHWINDGLMAIYFLYIGLEIKREIIVGTLSKPSNIITPAIAAFAGLAMPSLIYLSINHD-IKVINGWA--IPSATDIAFT 133 (383)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHhchHHHHHHHHhhccC-CcccCccc--cccHHHHHHH
Confidence 3344444456788999999987765432200 33 3567788999997654444321 11 12343 2222222222
Q ss_pred HhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 163 LTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFC 242 (799)
Q Consensus 163 ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~ 242 (799)
+.+ ..+-- +-.+..+.-..++-|++||+.++++++++++-.- ...+...... .+.+. ++.+
T Consensus 134 lgv-------LallG-~rvP~~lrvFLlaLAIvDDlgAI~VIAlFYt~~i-~~~~L~~A~~--~~~~l--------~~~n 194 (383)
T PRK14854 134 LGI-------LALLG-TRVPAKLKLLVITIAIFDDIAAIAIIAIFYTKSL-SLLSLSLGTL--FILAM--------IICN 194 (383)
T ss_pred HHH-------HHHhc-CCCCHHHHHHHHHHHHHHhhhhHhheeeecCCCc-cHHHHHHHHH--HHHHH--------HHHH
Confidence 222 11111 2256667778889999999999998887774211 2222222111 11111 1122
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----chhHHHHHHhhhhhhhhhhHH-HHH
Q 046529 243 SAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQP----ITNTFKDKLDDFLVSSGLPGF-FLL 317 (799)
Q Consensus 243 ~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~----~~~~l~~kl~~~~~~l~lPlF-F~~ 317 (799)
|. +..+....++++..++..+. ...|+|+.++..+.|+++|...+ ..+++++++++++..+.+|+| |..
T Consensus 195 r~----~~v~~~~~Y~~~G~~lW~~~--l~SGvHaTiAGV~~a~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFA~aN 268 (383)
T PRK14854 195 RI----FKINRSSVYVVLGFFAWFCT--IKSGVHATLAGFTTALCIPFRENDKDSPANFMEDSLHPWIIYFILPVFAFAN 268 (383)
T ss_pred Hh----cCCceehHHHHHHHHHHHHH--HHhcccHHHHHHHHHHhcccCCCCCCCHHHHHHHHhhchHHHhhHHHHHhhc
Confidence 21 12444555656555554444 47899999999999999996322 135788889999999999999 888
Q ss_pred hhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-hHHHHHHhhh
Q 046529 318 TGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-LLALIVLNTA 386 (799)
Q Consensus 318 ~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~~~~~~ 386 (799)
.|..++-..+... .-.....+++..++||.+|.+..+++. +++|++-..+|+ ++.-| ++++.+++.+
T Consensus 269 AGV~l~~~~~~~~-~~pv~~GI~~GL~~GK~lGI~~~s~lavkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFIa~LA 346 (383)
T PRK14854 269 AGISFSGISFSIL-FEPITLGIILGLFVGKQLGIFSILAVFKKLKWFKLGESFSNLQLYGISL-LCGIGFTMSLFIGVLA 346 (383)
T ss_pred CCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhh
Confidence 9988842222211 122456677777899999998888765 578999999999 55555 8999999999
Q ss_pred ccC
Q 046529 387 CNR 389 (799)
Q Consensus 387 ~~~ 389 (799)
++.
T Consensus 347 F~~ 349 (383)
T PRK14854 347 FND 349 (383)
T ss_pred CCC
Confidence 953
No 25
>PRK09561 nhaA pH-dependent sodium/proton antiporter; Reviewed
Probab=99.24 E-value=1.4e-09 Score=117.75 Aligned_cols=269 Identities=19% Similarity=0.215 Sum_probs=169.4
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcC---cchhhhhhHHHHHH
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGE---SQEFITQGGYMFCA 160 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~---~~~~~~~~~~l~l~ 160 (799)
.+.+.+.=+.+|.|.+|+|++.+.+...... || ...-|+.|+++|.++-..+.. ..+ .+|. .+.+.-++
T Consensus 60 ~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lPi~AAlGGmivPAliy~~~n~--~~~~~~~GWa--IP~ATDIA 135 (388)
T PRK09561 60 LLWINDGLMAVFFLLIGLEVKRELLEGSLASRRQAALPVIAAIGGMLVPALIYLLFNY--ADPVTREGWA--IPAATDIA 135 (388)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhchHHHHHHHhheec--CCCcccCccc--cccHHHHH
Confidence 3344444457788999999998776432200 23 345678889999765433321 111 2343 22222222
Q ss_pred HHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 161 VALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWV 240 (799)
Q Consensus 161 ~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l 240 (799)
.++.+- .++. +-.+..+....++-|++||+.++++++++++-.- ...+..+...++. + .++
T Consensus 136 Falgvl------allG--~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i-~~~~L~~a~~~~~--~--------l~~ 196 (388)
T PRK09561 136 FALGVL------ALLG--SRVPVALKIFLLALAIIDDLGAIVIIALFYTSDL-SMVSLGVAAVAIA--V--------LAV 196 (388)
T ss_pred HHHHHH------HHhc--CCCCHHHHHHHHHHHHHHHhhhHhheeeecCCCc-cHHHHHHHHHHHH--H--------HHH
Confidence 222211 1111 2356667789999999999999999887774211 2222222211111 1 122
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCc----hhHHHHHHhhhhhhhhhhHH-H
Q 046529 241 FCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPI----TNTFKDKLDDFLVSSGLPGF-F 315 (799)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~----~~~l~~kl~~~~~~l~lPlF-F 315 (799)
.+|. ..+....++++..++..+.. ..|+|+.++..+.|+.+|...+. .+++++++++.+..+.+|+| |
T Consensus 197 ln~~-----~v~~~~~Y~~~G~~lW~~~l--~SGvHaTiAGV~la~~iP~~~~~~~~pl~rleh~L~p~v~~~IlPlFAf 269 (388)
T PRK09561 197 LNLC-----GVRRTSVYILVGVVLWVAVL--KSGVHATLAGVIVGFFIPLKEKHGRSPAERLEHGLHPWVAFLILPLFAF 269 (388)
T ss_pred HHHc-----CCccchHHHHHHHHHHHHHH--HccccHHHHHHHHHhhccccCCCCCCHHHHHHHHhhhhhhheeHHHHHh
Confidence 3332 24555666666655554444 78999999999999999963222 36788999999999999999 8
Q ss_pred HHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-hHHHHHHh
Q 046529 316 LLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-LLALIVLN 384 (799)
Q Consensus 316 ~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~~~~ 384 (799)
...|..++-..+... .-.....+++..++||.+|.+..+++. +++|++-..+|+ ++.-| ++++.+.+
T Consensus 270 aNAGV~l~~~~~~~~-~~pv~lgV~~GL~~GK~lGI~~~~~l~vkl~~~~lP~g~~w~~l~gv~~-L~GIGFTmSLFIa~ 347 (388)
T PRK09561 270 ANAGVSLQGVTLDGL-TSPLPLGIALGLFIGKPLGIFLFSWLAVKLKLAKLPEGTTFKQIYAVGV-LCGIGFTMSIFIAS 347 (388)
T ss_pred hcCCeeeccCcHHhh-cCcHHHHHHHHHHhcchHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHH
Confidence 888888832112111 112455677777899999999888766 678999888998 55555 88999999
Q ss_pred hhcc
Q 046529 385 TACN 388 (799)
Q Consensus 385 ~~~~ 388 (799)
.+++
T Consensus 348 LAF~ 351 (388)
T PRK09561 348 LAFG 351 (388)
T ss_pred HhcC
Confidence 9985
No 26
>PRK14855 nhaA pH-dependent sodium/proton antiporter; Provisional
Probab=99.22 E-value=2.1e-09 Score=117.87 Aligned_cols=265 Identities=19% Similarity=0.179 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcC--cchhhhhhHHHHHHH
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGE--SQEFITQGGYMFCAV 161 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~--~~~~~~~~~~l~l~~ 161 (799)
...+.+--+.+|.|.+|+|++-+.+....+. |+ ...-|+.|+++|.++-..+.. ..+ .+|. .+.+.-++.
T Consensus 64 ~~wINDgLMaiFFf~VGLEIKrE~l~GeLs~~r~a~lPiiAAlGGmivPAlIy~~~n~--~~~~~~GWg--IPmATDIAF 139 (423)
T PRK14855 64 EHWVNDGLMAVFFLLVGLEIKRELLIGELSSPRQAALAVVAALGGMLVPAALYTALNA--GGPGASGWG--VPMATDIAF 139 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcccCCChHHHHHHHHHHHhchHHHHHHHheeec--CCCccCccc--cccHHHHHH
Confidence 3344444457788999999988776432200 33 345677888998654333221 111 2343 222222222
Q ss_pred HHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 162 ALTATNFQELTQILTDL-RILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWV 240 (799)
Q Consensus 162 ~ls~Ts~pvv~~iL~el-kl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l 240 (799)
++ .+|.=+ +-.+..+-...++-|++||+.++++++++++-.- ...|..+..+++. + .++
T Consensus 140 Al---------gvLallG~rvP~~LrvFLlaLAIvDDlgAI~VIAlFYt~~i-~~~~L~~a~~~~~-~---------l~~ 199 (423)
T PRK14855 140 AL---------GVLALLGSRVPLGLKVFLTALAIVDDLGAVLVIALFYTSGL-NLLALLLAALTWA-L---------ALL 199 (423)
T ss_pred HH---------HHHHHhcCCCCHHHHHHHHHHHHHhhhhhheeeEeecCCCC-CHHHHHHHHHHHH-H---------HHH
Confidence 22 222212 2255667788999999999999998887774211 2233222221111 1 122
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC-c-------------------------
Q 046529 241 FCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQP-I------------------------- 294 (799)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~-~------------------------- 294 (799)
.+|. + ++....++.+.+++..+.. ..|+|+.++..+.|+++|..++ .
T Consensus 200 ln~~--~---v~~~~~Y~~~G~~lW~~~l--~SGVHaTiAGV~lal~iP~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (423)
T PRK14855 200 AGRL--G---VTSLKIYAVLGALLWFFVL--KSGLHPTVAGVLLALAVPIRRRDPLPYLASLLDAAAPGRPEVVGARLRD 272 (423)
T ss_pred HHHc--C---CccccHHHHHHHHHHHHHH--HhcccHHHHHHHHHHhccccccccchhHHHHHHHhhcccchhhhHHHHh
Confidence 3332 2 4555566666655554444 7899999999999999996311 1
Q ss_pred -----------hhHHHHHHhhhhhhhhhhHH-HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----
Q 046529 295 -----------TNTFKDKLDDFLVSSGLPGF-FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH---- 358 (799)
Q Consensus 295 -----------~~~l~~kl~~~~~~l~lPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~---- 358 (799)
.+++++++.+.+..+.+|+| |+..|..++-.. .. .....+++..++||.+|.+..+++.
T Consensus 273 ~~~~~~~~~~Pl~rleh~L~p~vaf~IlPlFAfaNAGV~l~~~~-~~----pv~lGI~~GLvvGK~lGI~~~s~lavkl~ 347 (423)
T PRK14855 273 LEDLLERAQSPLHRLEHALHPWSTFLILPVFALFNAGVSVSGGG-LG----TVSLGVFLGLLLGKPLGVVGGAWLAVRLG 347 (423)
T ss_pred hhhhccccCCHHHHHHHHhhhhHHHhhHHHHHhhcCCeeecCCC-CC----cHHHHHHHHHHhcchHHHHHHHHHHHHhC
Confidence 24577788899888999999 888998885333 22 2456677777889999999888866
Q ss_pred ------CCChHHHHHHHHHHhhhh-hHHHHHHhhhccC
Q 046529 359 ------KIPPKEGLALGLLMNTKG-LLALIVLNTACNR 389 (799)
Q Consensus 359 ------~~~~~e~~~lgl~l~~kG-~v~l~~~~~~~~~ 389 (799)
+++|++-..+|+ ++.-| ++++.+++.+++.
T Consensus 348 ~a~lP~g~~w~~l~gv~~-LaGIGFTmSLFIa~LAF~~ 384 (423)
T PRK14855 348 LASLPRRVNWLHMLGAGL-LAGIGFTMSLFISNLAFAD 384 (423)
T ss_pred CCCCCCCCCHHHHHHHHH-HHHHHHHHHHHHHHhhCCC
Confidence 678999999999 55555 8999999999953
No 27
>PF06965 Na_H_antiport_1: Na+/H+ antiporter 1; InterPro: IPR004670 NhaA is a sodium ion/proton antiporter that uses the proton electrochemical gradient to expel sodium ions from the cytoplasm and functions primarily in the adaptation to high salinity at alkaline pH. NhaA is also believed to be responsible for adaptation to alkaline pH when sodium is available. NhaA is one of the three known sodium ion/proton antiporters in Escherichia coli along with NhaB and ChaA, though there are other mechanisms for Na+ extrusion such as NDH-I complicating the determination of the precise roles of each of the transporters [].; GO: 0006814 sodium ion transport, 0006885 regulation of pH, 0016021 integral to membrane; PDB: 3FI1_A 1ZCD_A.
Probab=98.99 E-value=1.5e-09 Score=117.69 Aligned_cols=274 Identities=19% Similarity=0.252 Sum_probs=155.2
Q ss_pred HHHHHHHHHHHHHHHHHhhccChHHHHhcCCC-ch---hhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHH
Q 046529 87 LLETYAYIALLFYLFLIGLDMDINLISATGMT-NK---VVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVA 162 (799)
Q Consensus 87 ~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~-~~---~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ 162 (799)
..+.+.+-=+.+|.|.+|+|++.+.+...... || ...-++.|+++|.++-.. +..+.+ ...--+|+-
T Consensus 55 l~~wiNDgLMaiFFf~vGLEiKrE~~~GeL~~~r~a~lP~~AAlGGm~vPalIyl~----~n~~~~-----~~~~GW~IP 125 (378)
T PF06965_consen 55 LHHWINDGLMAIFFFVVGLEIKRELLVGELSSPRKAALPIIAALGGMLVPALIYLA----FNAGGP-----EAAHGWAIP 125 (378)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTTTSHHHHHHHHHHTTTTHHHHGG----G--SST-----THHHHTSSS
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHhCCCCCChhhhhhHHHHHHhcchHHHHHHhe----eecCCC-----CcCceEEec
Confidence 34444455557788999999988766432210 33 345677888888654322 221100 011111111
Q ss_pred HhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 163 LTATNFQELTQILTDL-RILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVF 241 (799)
Q Consensus 163 ls~Ts~pvv~~iL~el-kl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~ 241 (799)
..|+.+-...++.=+ +-.+..+....++-|++||+.++++++++++-.- ...|..... +.+++. |..
T Consensus 126 -~ATDIAFAlgvlal~G~rvP~~lrvFLlaLAIvDDlgaIlVIA~FYt~~i-~~~~L~~a~-~~~~~l---------~~l 193 (378)
T PF06965_consen 126 -MATDIAFALGVLALLGKRVPASLRVFLLALAIVDDLGAILVIALFYTDGI-SLLWLLLAA-AALLLL---------FVL 193 (378)
T ss_dssp -S---HHHHHHHHHSS-SSS-SSSHHHHHHHHHHHHHHHHHHHHHHS------HHHHHHHH-HHHHHH---------HHH
T ss_pred -ccccHHHHHHHHHHhcCCCChHHHHHHHHHHHHhhhhhHhheeeeeCCCC-CHHHHHHHH-HHHHHH---------HHH
Confidence 122322223333222 2255667789999999999999999988875211 222222221 111111 223
Q ss_pred HHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCch--------hHHHHHHhhhhhhhhhhH
Q 046529 242 CSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPIT--------NTFKDKLDDFLVSSGLPG 313 (799)
Q Consensus 242 ~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~--------~~l~~kl~~~~~~l~lPl 313 (799)
+|. + .+....+..+.+++. +.....|+|+.++..+.|+.+|..++.. +++++++++.++.+.+|+
T Consensus 194 ~r~--~---v~~~~~Y~~~G~~lW--~~~l~SGvHaTiAGV~~al~iP~~~~~~~~~~~~pl~rle~~L~p~v~~~IlPl 266 (378)
T PF06965_consen 194 NRL--G---VRSLWPYLLLGILLW--YAVLKSGVHATIAGVLLALFIPARPRAGEREAESPLERLEHALHPWVAFVILPL 266 (378)
T ss_dssp HHT--T------THHHHHHHHHHH--HHTTTSHHHHHHHHHHHHHHS---GGGS----S-HHHHHHHHHHHHHHHTHHHH
T ss_pred HHC--C---CceehHHHHHHHHHH--HHHHHcCCCHHHHHHHHheeeeccCCCCcccCCCHHHHHHHHhhhhhhhhhHHh
Confidence 442 1 344455555544333 3335789999999999999999754442 478888999998899999
Q ss_pred H-HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-hHHHH
Q 046529 314 F-FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-LLALI 381 (799)
Q Consensus 314 F-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~v~l~ 381 (799)
| |...|..++-..+... .-.....+++..++||.+|.+..+++. +++|++-..+|+ ++.-| ++++.
T Consensus 267 FAlaNAGV~l~~~~~~~~-~~pv~lGI~~GLvvGK~lGI~~~~~la~kl~~~~lP~~~~w~~l~gv~~-LaGIGFTmSLF 344 (378)
T PF06965_consen 267 FALANAGVSLSGSSLGDL-TSPVTLGIILGLVVGKPLGIFLFSWLAVKLGLARLPDGVSWRHLYGVGL-LAGIGFTMSLF 344 (378)
T ss_dssp HHHHHS----SSS---TH-HHHSSTTTTHHHHHTTGGGSTTTTTTTSS-TTT----S--GGGGTTHHH-HTT--HHHHHH
T ss_pred HhheeCceEEecCchHhh-hChHHHHHHHHHHcccchhhhhHHHHHHHhCCCCCCCCCCHHHHHHHHH-HHHHHHHHHHH
Confidence 9 8999998886554322 223345566777889999988887655 567888788888 45555 89999
Q ss_pred HHhhhccCC
Q 046529 382 VLNTACNRK 390 (799)
Q Consensus 382 ~~~~~~~~~ 390 (799)
+++.+++..
T Consensus 345 Ia~LAF~~~ 353 (378)
T PF06965_consen 345 IAGLAFDDP 353 (378)
T ss_dssp HHHHHSTT-
T ss_pred HHHHHcCCh
Confidence 999999873
No 28
>COG3004 NhaA Na+/H+ antiporter [Inorganic ion transport and metabolism]
Probab=98.95 E-value=1.5e-07 Score=98.17 Aligned_cols=264 Identities=20% Similarity=0.253 Sum_probs=167.4
Q ss_pred HHHHHHHHH-HHHHHHHhhccChHHHHhcCCC-chh---hHHHHHHHHHHHHHHHHHHHHHhcC-----cchhhhhhHHH
Q 046529 88 LETYAYIAL-LFYLFLIGLDMDINLISATGMT-NKV---VSIALAGTLVPMAVGLGAFFLVIGE-----SQEFITQGGYM 157 (799)
Q Consensus 88 l~~la~lGl-i~~lFl~Gle~d~~~l~~~~~~-~~~---~~ia~~~~lip~~~g~~~~~~l~~~-----~~~~~~~~~~l 157 (799)
+...-+=|+ ..|.+++|+|++.+.+...... +++ ..-++.|+++|.++ +..+..+ .+|. .+.+.
T Consensus 62 l~~WINDgLMAvFFl~iGLEvKrEll~G~L~s~~~a~~P~iAA~GGmi~PAli----y~~~n~~~p~~~~GWa--IP~AT 135 (390)
T COG3004 62 LLLWINDGLMAVFFLLIGLEVKRELLEGQLSSWRNAAFPVIAAIGGMIAPALI----YLALNAGDPATLEGWA--IPMAT 135 (390)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHcccccCchhhhhHHHHHhccchhhhhH----hheeecCChhhhcCcC--cccHH
Confidence 333334444 4577789999998877543210 332 34566788888543 2223221 1233 22222
Q ss_pred HHHHHHhhccHHHHHHHHHhc-cccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q 046529 158 FCAVALTATNFQELTQILTDL-RILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPA 236 (799)
Q Consensus 158 ~l~~~ls~Ts~pvv~~iL~el-kl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~ 236 (799)
-++.+ ..++.=+ |..++.+--..++-|++||+-++++.+++++-.- +..+...+. +.+.+.. .
T Consensus 136 DiAFA---------lGvlaLLG~rVP~sLKiFLlaLAI~DDlgAIvIIAlFYt~~L-s~~al~~a~---~~i~vL~---~ 199 (390)
T COG3004 136 DIAFA---------LGVLALLGSRVPLSLKIFLLALAIIDDLGAIVIIALFYTTDL-SMAALGIAA---LAIAVLA---V 199 (390)
T ss_pred HHHHH---------HHHHHHhcCCCChHHHHHHHHHHHHhhcchhhhhhhhhcCCc-cHHHHHHHH---HHHHHHH---H
Confidence 22222 2222222 3367777788999999999999999888775321 111111111 1111111 1
Q ss_pred HHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC----chhHHHHHHhhhhhhhhhh
Q 046529 237 LSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQP----ITNTFKDKLDDFLVSSGLP 312 (799)
Q Consensus 237 ~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~----~~~~l~~kl~~~~~~l~lP 312 (799)
+ +|. + ++....+++...++..+.+ ..|+|+.++..+.|+.+|-..+ .-+++++.+.+.+..+.+|
T Consensus 200 l----N~~--~---v~~l~~Y~~~gviLW~~vl--kSGVHATLAGVi~~f~IPl~~k~~~spl~~leh~L~pwvaf~IlP 268 (390)
T COG3004 200 L----NRL--G---VRRLSPYLLVGVILWIAVL--KSGVHATLAGVILAFFIPLKTKEGESPLERLEHALHPWVAFFILP 268 (390)
T ss_pred H----HHh--C---chhhhHHHHHHHHHHHHHH--HhhhHHHHHHHHHHeeeeccCCCCCCcHHHHHHHhhhhHHHHHHH
Confidence 2 221 1 3344556666666665554 7899999999999999995433 3367788888998899999
Q ss_pred HH-HHHhhhccc---cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhh-h
Q 046529 313 GF-FLLTGFRSN---LVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKG-L 377 (799)
Q Consensus 313 lF-F~~~Gl~id---l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG-~ 377 (799)
+| |...|.+++ .+.+.+ ...+.+++..++||.+|.+..++.. +.+|++-...++ ++..| +
T Consensus 269 lFaFaNAGvsl~g~~~~~l~s----~l~lgI~lGL~~GKplGIf~fs~lAvkl~lA~lP~g~~~~qi~~v~i-LcGIGFT 343 (390)
T COG3004 269 LFAFANAGVSLQGVSLSGLTS----PLTLGIILGLFLGKPLGIFLFSWLAVKLKLAKLPEGISWKQIYGVSI-LCGIGFT 343 (390)
T ss_pred HHHHccCCccccccccccccc----chHHHHHHHHHhcCcchhhhhHHHHHHhhhccCCCCCCHHHHHHHHH-HHhhhHH
Confidence 99 889998876 444433 3466777788899999999988865 678999888888 45555 8
Q ss_pred HHHHHHhhhccC
Q 046529 378 LALIVLNTACNR 389 (799)
Q Consensus 378 v~l~~~~~~~~~ 389 (799)
+++.+...+++.
T Consensus 344 MSlFI~~LAf~~ 355 (390)
T COG3004 344 MSLFIASLAFGS 355 (390)
T ss_pred HHHHHHHHhcCC
Confidence 888888888865
No 29
>KOG1966 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=98.91 E-value=8.4e-10 Score=123.21 Aligned_cols=311 Identities=12% Similarity=0.075 Sum_probs=209.5
Q ss_pred HHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc----CcchhhhhhHHHHHHHHHhhccHHHHHHH
Q 046529 99 YLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG----ESQEFITQGGYMFCAVALTATNFQELTQI 174 (799)
Q Consensus 99 ~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~----~~~~~~~~~~~l~l~~~ls~Ts~pvv~~i 174 (799)
++|-+|+-|.-+.+..|. ..++..|.+|.+.-.+...+..+.+.. +...+ ....++.|...|..++..+..+
T Consensus 109 IvlDAGYfMp~r~Ff~Nl--gtILlfAVvGTi~Na~~~g~sL~~i~~~glf~~~~g--lld~LlFgSLIsAVDPVAVLaV 184 (670)
T KOG1966|consen 109 IVLDAGYFMPNRAFFENL--GTILLFAVVGTIWNAFTIGASLYAISLSGLFGMSIG--LLDILLFGSLISAVDPVAVLAV 184 (670)
T ss_pred HHhcccccCccHHHHhcc--chhhhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCch--HHHHHHHHHHHHhcCchhhhhh
Confidence 778999999999999999 999999999988865433322222222 21222 4577889999999999889999
Q ss_pred HHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC--C---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 175 LTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSN--P---------SQYYEVLSTVGFILICVVVVRPALSWVFCS 243 (799)
Q Consensus 175 L~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~--~---------~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~ 243 (799)
.+|.. .|.-+=-++.+++++||.+.++++-++.++.. + .....++...+..++++.++..+.....|.
T Consensus 185 FEEih-VNe~LfI~VFGESLlNDaVTVVLY~~f~sf~~ig~~n~~~~d~~~G~~sFfVVslGG~lvGivfafl~sl~tkf 263 (670)
T KOG1966|consen 185 FEEIH-VNEVLFIIVFGESLLNDAVTVVLYNMFISFVEIGSDNLTTIDYVLGVVSFFVVSLGGALVGIVFAFLASLVTKF 263 (670)
T ss_pred hhhhc-cccEEEeeeehhhhhcCceEEehHHHHHHHHHhcccceeEeeeecceeEEEEEecCchhHHHHHHHHHHHHHHh
Confidence 99998 66666678899999999999999877776632 1 111111111222233333444444445555
Q ss_pred hhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-----CCchhHHHHHHhhhhhhhhhhHHHHHh
Q 046529 244 AIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKK-----QPITNTFKDKLDDFLVSSGLPGFFLLT 318 (799)
Q Consensus 244 ~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~-----~~~~~~l~~kl~~~~~~l~lPlFF~~~ 318 (799)
+. .++-...++++++...+|..+|.+++|++++-.+.|+++..- ......-+..+-...+..--++.|++.
T Consensus 264 t~----~vrviePvfif~~pYlaYL~aEm~hlSgIlAii~CG~~m~~Yv~~Nis~~s~~tvky~~K~lss~sEt~IF~fL 339 (670)
T KOG1966|consen 264 TK----HVRVLEPVFIFLLPYLAYLTAEMFHLSGILAIIFCGLCMKKYVEANISQKSATTVKYFMKMLSSLSETVIFMFL 339 (670)
T ss_pred hc----ceeeecchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhccchhhheee
Confidence 42 255567789999999999999999999999999999999752 112222233333344677778889999
Q ss_pred hhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh------CCChHHHHHHHHHHhhhhhHHHHHHhhhccCC--
Q 046529 319 GFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH------KIPPKEGLALGLLMNTKGLLALIVLNTACNRK-- 390 (799)
Q Consensus 319 Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~------~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~-- 390 (799)
|.++=-. ...|+|.++.+-++.+.+-|.+++...+++. +++..|-+.++. =+-||.+...+....-...
T Consensus 340 Gvs~v~~--~h~wd~~Fi~~T~~fc~~~R~lgv~~lt~~~N~fr~~k~~~~DQfimsy-GGLRGAiaF~LV~lid~~~vp 416 (670)
T KOG1966|consen 340 GVSTVSS--NHHWDFAFICLTLVFCLIYRAIGVVVLTWFLNKFRMVKLEFVDQFIMSY-GGLRGAIAFGLVVLIDGAKVP 416 (670)
T ss_pred hhhhcCC--cceeehhhhhhHHHHHHHHHHHHhhhhhhhhhhhheeeccccceeeeec-CCcchhhheeEEEEeccccCC
Confidence 9876322 3344677777777777888999988888876 456777776665 3667766555443322222
Q ss_pred ---CCCCCchhHHHHHHHHHHHHHHHHHHHhhhh
Q 046529 391 ---DLVDEAFPPTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 391 ---ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
..-..+..++.+.+.+..+..-|+++++--+
T Consensus 417 ~K~~Fvttti~VIfFTVflQGiTIkplvk~L~Vk 450 (670)
T KOG1966|consen 417 AKNMFVTTTIAVIFFTVFLQGITIKPLVKFLKVK 450 (670)
T ss_pred cccceEeeeeEEEeeeeeecccchHHHHHHHccc
Confidence 2222344455555666677788999997543
No 30
>PRK15456 universal stress protein UspG; Provisional
Probab=98.72 E-value=6.9e-08 Score=92.60 Aligned_cols=136 Identities=7% Similarity=0.087 Sum_probs=85.9
Q ss_pred ceEEEEeecCC--ChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 442 FRIMACIHSTR--NIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 442 ~riLvcv~~~~--~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
.|||+|++..+ +...+++.+..++.. . -.++++|+++...... . ... ..+.........++.-+.+
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~-~--~~l~llhv~~~~~~~~-~---~~~-----~~~~~~~~~~~~~~~~~~l 70 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQD-D--GVIHLLHVLPGSASLS-L---HRF-----AADVRRFEEHLQHEAEERL 70 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhc-C--CeEEEEEEecCccccc-c---ccc-----ccchhhHHHHHHHHHHHHH
Confidence 47999999974 788888888877654 2 2689999986542110 0 000 0000000011112222233
Q ss_pred HHHHHh-cCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKT-SNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~-~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
+.+.+. ...++.+++.+... +..++|++.|++.++||||||-|++. ....+ ++++.++|++++||||.|.
T Consensus 71 ~~~~~~~~~~~~~v~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~-~~~~l-----lGS~a~~v~~~a~~pVLvV 141 (142)
T PRK15456 71 QTMVSHFTIDPSRIKQHVRFG---SVRDEVNELAEELGADVVVIGSRNPS-ISTHL-----LGSNASSVIRHANLPVLVV 141 (142)
T ss_pred HHHHHHhCCCCcceEEEEcCC---ChHHHHHHHHhhcCCCEEEEcCCCCC-cccee-----cCccHHHHHHcCCCCEEEe
Confidence 333322 12456677666554 78999999999999999999999863 33333 6778999999999998653
No 31
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.71 E-value=8.8e-08 Score=92.14 Aligned_cols=143 Identities=12% Similarity=0.184 Sum_probs=89.5
Q ss_pred eEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENY 522 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 522 (799)
+||+|++..++....++.+..++...+ ..++++|+++.+.... .. ... .+..........+..++.++.+...
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~--~~l~ll~v~~~~~~~~-~~--~~~--~~~~~~~~~~~~~~~~~~l~~~~~~ 73 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKG--QTIVLVHVHPPITSIP-SS--SGK--LEVASAYKQEEDKEAKELLLPYRCF 73 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCC--CcEEEEEeccCcccCC-CC--ccc--hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999998876554 4579999987532211 00 000 0000000000012233344333322
Q ss_pred HHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccH-HHHHhhhccCC--CceEEEE
Q 046529 523 EKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNR-TVNLNLLQNTP--CSVCIFV 599 (799)
Q Consensus 523 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~-~vn~~Vl~~Ap--CsVgIlv 599 (799)
.+. .++.++...... .+..+.|++.|++.++|+|+||-|++......+ ++ ++.++|+++|| |||-| |
T Consensus 74 ~~~--~~~~~~~~~~~g--~~~~~~I~~~a~~~~~dlIV~Gs~g~~~l~~~~-----~gssva~~Vi~~a~~~c~Vlv-v 143 (146)
T cd01989 74 CSR--KGVQCEDVVLED--DDVAKAIVEYVADHGITKLVMGASSDNHFSMKF-----KKSDVASSVLKEAPDFCTVYV-V 143 (146)
T ss_pred Hhh--cCCeEEEEEEeC--CcHHHHHHHHHHHcCCCEEEEeccCCCceeecc-----cCCchhHHHHhcCCCCceEEE-E
Confidence 222 456666655443 378999999999999999999999886544333 44 47899999999 99954 4
Q ss_pred cCC
Q 046529 600 DRG 602 (799)
Q Consensus 600 dRg 602 (799)
.+|
T Consensus 144 ~~~ 146 (146)
T cd01989 144 SKG 146 (146)
T ss_pred eCc
Confidence 443
No 32
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=98.64 E-value=2.4e-07 Score=86.45 Aligned_cols=122 Identities=15% Similarity=0.128 Sum_probs=87.9
Q ss_pred eEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENY 522 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 522 (799)
|||+|+++++....+++.+..++...+. .++++|+++-... . ...+.++.++.+++.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~--~l~ll~v~~~~~~---------~------------~~~~~~~~l~~~~~~ 57 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKA--PWYVVYVETPRLN---------R------------LSEAERRRLAEALRL 57 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCC--CEEEEEEecCccc---------c------------CCHHHHHHHHHHHHH
Confidence 6999999999999999999988866554 5699999852211 0 012234555555555
Q ss_pred HHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccC-CCceEEE
Q 046529 523 EKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNT-PCSVCIF 598 (799)
Q Consensus 523 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~A-pCsVgIl 598 (799)
.+. .++. ..+..+ .+..+.|++.|++.++|+|++|+|++......+ ++++.++|+++| ||+|-|.
T Consensus 58 ~~~--~~~~--~~~~~~--~~~~~~I~~~~~~~~~dllviG~~~~~~~~~~~-----~Gs~~~~v~~~a~~~~v~v~ 123 (124)
T cd01987 58 AEE--LGAE--VVTLPG--DDVAEAIVEFAREHNVTQIVVGKSRRSRWRELF-----RGSLVDRLLRRAGNIDVHIV 123 (124)
T ss_pred HHH--cCCE--EEEEeC--CcHHHHHHHHHHHcCCCEEEeCCCCCchHHHHh-----cccHHHHHHHhCCCCeEEEe
Confidence 443 2333 333334 478899999999999999999999876554433 677899999999 9998653
No 33
>PRK15005 universal stress protein F; Provisional
Probab=98.62 E-value=2.3e-07 Score=88.96 Aligned_cols=138 Identities=17% Similarity=0.174 Sum_probs=83.6
Q ss_pred ceEEEEeecCCC--hHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 442 FRIMACIHSTRN--IAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 442 ~riLvcv~~~~~--~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
-|||+|++..++ ....++.+..++...+ ..++++|+++............. ..........++..+.+
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~--~~l~ll~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l 72 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDD--AEVHFLTVIPSLPYYASLGLAYS--------AELPAMDDLKAEAKSQL 72 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccC--CeEEEEEEEccCccccccccccc--------ccchHHHHHHHHHHHHH
Confidence 369999999987 4677877777765444 35799999975332111100000 00000011112222333
Q ss_pred HHHHHhc-CCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKTS-NNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~~-~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
+++.+.. ..+++++..+.. .+..+.|++.|++.++|+|+||-|+. ...+. .++++..+|++++||||.|.
T Consensus 73 ~~~~~~~~~~~~~~~~~v~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~-~~~~~-----llGS~a~~vl~~a~cpVlvV 143 (144)
T PRK15005 73 EEIIKKFKLPTDRVHVHVEE---GSPKDRILELAKKIPADMIIIASHRP-DITTY-----LLGSNAAAVVRHAECSVLVV 143 (144)
T ss_pred HHHHHHhCCCCCceEEEEeC---CCHHHHHHHHHHHcCCCEEEEeCCCC-Cchhe-----eecchHHHHHHhCCCCEEEe
Confidence 3333321 134556555544 37789999999999999999998842 33333 36778999999999998653
No 34
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.57 E-value=1.8e-07 Score=87.63 Aligned_cols=134 Identities=14% Similarity=0.203 Sum_probs=87.6
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHH-
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFE- 520 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~- 520 (799)
-|||+|+++.++...+++.+..++...+ ..++++|+++.............. .....+.......
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~--~~i~~l~v~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~ 68 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSG--AEITLLHVIPPPPQYSFSAAEDEE------------SEEEAEEEEQARQA 68 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEESCHCHHHHHHHHHH------------HHHHHHHHHHHHHH
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhC--CeEEEEEeeccccccccccccccc------------cccccchhhhhhhH
Confidence 4899999999999999999888876544 468999999977654322111100 0000111110000
Q ss_pred --HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 521 --NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 521 --~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
..... .......... .+ .+..+.|++.+++.++|+|++|.|++....+.+ ++++.+++++++||||.|+
T Consensus 69 ~~~~~~~-~~~~~~~~~~-~~--~~~~~~i~~~~~~~~~dliv~G~~~~~~~~~~~-----~gs~~~~l~~~~~~pVlvv 139 (140)
T PF00582_consen 69 EAEEAEA-EGGIVIEVVI-ES--GDVADAIIEFAEEHNADLIVMGSRGRSGLERLL-----FGSVAEKLLRHAPCPVLVV 139 (140)
T ss_dssp HHHHHHH-HTTSEEEEEE-EE--SSHHHHHHHHHHHTTCSEEEEESSSTTSTTTSS-----SHHHHHHHHHHTSSEEEEE
T ss_pred HHHHHhh-hccceeEEEE-Ee--eccchhhhhccccccceeEEEeccCCCCccCCC-----cCCHHHHHHHcCCCCEEEe
Confidence 11111 0223333333 33 389999999999999999999999865544443 8889999999999999764
No 35
>PRK09982 universal stress protein UspD; Provisional
Probab=98.48 E-value=5.5e-07 Score=86.52 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=81.9
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
.+||+|++..++....++.+..++...+ .+++++|+++......+.. ... ..........++.-+.++.
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~--a~l~llhV~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~~~l~~ 72 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHND--AHLTLIHIDDGLSELYPGI--YFP-------ATEDILQLLKNKSDNKLYK 72 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhC--CeEEEEEEccCcchhchhh--hcc-------chHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998888875544 4689999986432111000 000 0000001111212222333
Q ss_pred HHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 522 YEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 522 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
..+.. ....++..+... +..+.||+.|++.++|||+||-| +.... ++ +. +.++|+++|+|||.|.
T Consensus 73 ~~~~~-~~~~~~~~v~~G---~p~~~I~~~A~~~~aDLIVmG~~-~~~~~-~~-----~~-va~~V~~~s~~pVLvv 137 (142)
T PRK09982 73 LTKNI-QWPKTKLRIERG---EMPETLLEIMQKEQCDLLVCGHH-HSFIN-RL-----MP-AYRGMINKMSADLLIV 137 (142)
T ss_pred HHHhc-CCCcceEEEEec---CHHHHHHHHHHHcCCCEEEEeCC-hhHHH-HH-----HH-HHHHHHhcCCCCEEEe
Confidence 33321 223345444444 78999999999999999999965 32211 11 43 7899999999998664
No 36
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=98.43 E-value=1.5e-06 Score=83.51 Aligned_cols=133 Identities=8% Similarity=0.037 Sum_probs=81.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++..++....++.+..++...+ ..++++|+.+-.....+. ... ...........++..+.++.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~---~~~------~~~~~~~~~~~~~~~~~l~~ 72 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYN--AKVSLIHVDVNYSDLYTG---LID------VNLGDMQKRISEETHHALTE 72 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhC--CEEEEEEEccChhhhhhh---hhh------cchHHHHHHHHHHHHHHHHH
Confidence 3799999999999999888888775444 367999984211110000 000 00000011112233334444
Q ss_pred HHHhcCCceeEEE-EEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 522 YEKTSNNAVNVHT-LTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 522 ~~~~~~~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
+.+. .++.+.. .... .+.++.|++.|++.++|||++|-|++. -+ .++++.++|+++|||||.|.
T Consensus 73 ~~~~--~~~~~~~~~~~~---G~p~~~I~~~a~~~~~DLIV~Gs~~~~--~~------~lgSva~~v~~~a~~pVLvv 137 (144)
T PRK15118 73 LSTN--AGYPITETLSGS---GDLGQVLVDAIKKYDMDLVVCGHHQDF--WS------KLMSSARQLINTVHVDMLIV 137 (144)
T ss_pred HHHh--CCCCceEEEEEe---cCHHHHHHHHHHHhCCCEEEEeCcccH--HH------HHHHHHHHHHhhCCCCEEEe
Confidence 4443 3344422 2222 378999999999999999999998531 11 15688999999999998664
No 37
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=98.34 E-value=3.9e-06 Score=77.68 Aligned_cols=129 Identities=17% Similarity=0.195 Sum_probs=88.2
Q ss_pred eEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFENY 522 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~~ 522 (799)
+||+|+.+++....+++.+..++...+ ..++++|+.+-.+.... +. .. ....+.++.++.+...
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~--~~i~~l~v~~~~~~~~~-----~~-------~~--~~~~~~~~~l~~~~~~ 64 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLG--AELVLLHVVDPPPSSAA-----EL-------AE--LLEEEARALLEALREA 64 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCCCCcch-----hH-------HH--HHHHHHHHHHHHHHHH
Confidence 589999999999999999999887654 46799999765443221 00 00 0112234444444433
Q ss_pred HHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 523 EKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 523 ~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
... .+++++.....+ +..++|++.+++.++|++++|++++....+.+ +++..+++++++||+|-+
T Consensus 65 ~~~--~~~~~~~~~~~~---~~~~~i~~~~~~~~~dlvvig~~~~~~~~~~~-----~~~~~~~ll~~~~~pvli 129 (130)
T cd00293 65 LAE--AGVKVETVVLEG---DPAEAILEAAEELGADLIVMGSRGRSGLRRLL-----LGSVAERVLRHAPCPVLV 129 (130)
T ss_pred Hhc--CCCceEEEEecC---CCHHHHHHHHHHcCCCEEEEcCCCCCccceee-----eccHHHHHHhCCCCCEEe
Confidence 222 457776665544 33899999999999999999998875433322 566788999999999854
No 38
>cd01988 Na_H_Antiporter_C The C-terminal domain of a subfamily of Na+ /H+ antiporter existed in bacteria and archea . Na+/H+ exchange proteins eject protons from cells, effectively eliminating excess acid from actively metabolising cells. Na+ /H+ exchange activity is also crucial for the regulation of cell volume, and for the reabsorption of NaCl across renal, intestinal, and other epithelia. These antiports exchange Na+ for H+ in an electroneutral manner, and this activity is carried out by a family of Na+ /H+ exchangers, or NHEs, which are known to be present in both prokaryotic and eukaryotic cells. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N-terminus and a large cytoplasmic region at the C-terminus. The transmembrane regions M3-M12 share identity wit h other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the regio
Probab=98.30 E-value=6.4e-06 Score=77.24 Aligned_cols=130 Identities=13% Similarity=0.085 Sum_probs=78.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
||+++..|.++++.++++|.+||+.++.+++++|+.+.......... +.+.+..++.++++....... .+.
T Consensus 1 ~ILv~vd~s~~~~~~l~~a~~la~~~~~~v~ll~v~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~-g~~ 71 (132)
T cd01988 1 RILVPVANPNTARDLLELAAALARAQNGEIIPLNVIEVPNHSSPSQL--------EVNVQRARKLLRQAERIAASL-GVP 71 (132)
T ss_pred CEEEecCCchhHHHHHHHHHHHhhcCCCeEEEEEEEecCCCCCcchh--------HHHHHHHHHHHHHHHHHhhhc-CCc
Confidence 58999999999999999999999999999999999864322000000 111122233444443322111 122
Q ss_pred EEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 701 YIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 701 y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.......++ +....|.++ +.+.||+|+|.+++. +....-+|..-+-+... ++++||||+
T Consensus 72 ~~~~~~~~~-~~~~~I~~~a~~~~~dlIV~G~~~~~------------~~~~~~lGs~~~~v~~~---~~~pvlvv~ 132 (132)
T cd01988 72 VHTIIRIDH-DIASGILRTAKERQADLIIMGWHGST------------SLRDRLFGGVIDQVLES---APCDVAVVK 132 (132)
T ss_pred eEEEEEecC-CHHHHHHHHHHhcCCCEEEEecCCCC------------CccceecCchHHHHHhc---CCCCEEEeC
Confidence 222222222 233333332 456999999999752 22345688888888864 678999985
No 39
>PRK11175 universal stress protein UspE; Provisional
Probab=98.25 E-value=6.6e-06 Score=89.35 Aligned_cols=144 Identities=11% Similarity=0.053 Sum_probs=88.2
Q ss_pred cceEEEEeecCCCh-------HHHHHHHHhhccCC-CCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhh
Q 046529 441 EFRIMACIHSTRNI-------AGMINLLQVSNATN-QSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEA 512 (799)
Q Consensus 441 e~riLvcv~~~~~~-------~~li~Ll~~~~~~~-~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (799)
.-+||+|++..+.. ..+++.+..++... + ..++++|+.+............. ..........
T Consensus 152 ~~~Ilva~D~s~~~~~~~~~~~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~--------~~~~~~~~~~ 221 (305)
T PRK11175 152 GGKILVAVNVASEEPYHDALNEKLVEEAIDLAEQLNH--AEVHLVNAYPVTPINIAIELPEF--------DPSVYNDAIR 221 (305)
T ss_pred CCeEEEEeCCCCCccchhHHHHHHHHHHHHHHhhCcC--CceEEEEEecCcchhcccccccc--------chhhHHHHHH
Confidence 35899999976643 35777777766443 3 35799999875432110000000 0000011112
Q ss_pred HHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCC
Q 046529 513 EQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTP 592 (799)
Q Consensus 513 ~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~Ap 592 (799)
++..+.++++.+. .+++........ .+..+.|++.|+++++|+|+||.|++....+.+ ++++.++|++++|
T Consensus 222 ~~~~~~l~~~~~~--~~~~~~~~~v~~--G~~~~~I~~~a~~~~~DLIVmG~~~~~~~~~~l-----lGS~a~~v~~~~~ 292 (305)
T PRK11175 222 GQHLLAMKALRQK--FGIDEEQTHVEE--GLPEEVIPDLAEHLDAELVILGTVGRTGLSAAF-----LGNTAEHVIDHLN 292 (305)
T ss_pred HHHHHHHHHHHHH--hCCChhheeecc--CCHHHHHHHHHHHhCCCEEEECCCccCCCccee-----ecchHHHHHhcCC
Confidence 2333344555443 233332222222 367899999999999999999999887665544 7788999999999
Q ss_pred CceEEEEcCCC
Q 046529 593 CSVCIFVDRGL 603 (799)
Q Consensus 593 CsVgIlvdRg~ 603 (799)
|||.++..+|+
T Consensus 293 ~pVLvv~~~~~ 303 (305)
T PRK11175 293 CDLLAIKPDGY 303 (305)
T ss_pred CCEEEEcCCCC
Confidence 99987766665
No 40
>PRK10116 universal stress protein UspC; Provisional
Probab=98.18 E-value=1.4e-05 Score=76.43 Aligned_cols=135 Identities=6% Similarity=0.027 Sum_probs=84.3
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||++++..++...+++.+..++...+. .++++|.++........ ... ..........++..+.+++
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a--~l~ll~v~~~~~~~~~~--~~~--------~~~~~~~~~~~~~~~~l~~ 71 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNG--KISLITLASDPEMYNQF--AAP--------MLEDLRSVMQEETQSFLDK 71 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCC--EEEEEEEccCcccchhh--hHH--------HHHHHHHHHHHHHHHHHHH
Confidence 47999999999999999998888765443 57889998653211100 000 0000001122222334444
Q ss_pred HHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEE
Q 046529 522 YEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFV 599 (799)
Q Consensus 522 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlv 599 (799)
+.+. .+++...... ...+..+.|++.|++.++||||+|-|++..... +.++..+|++++||||.|+-
T Consensus 72 ~~~~--~~~~~~~~~~--~~G~~~~~I~~~a~~~~~DLiV~g~~~~~~~~~-------~~s~a~~v~~~~~~pVLvv~ 138 (142)
T PRK10116 72 LIQD--ADYPIEKTFI--AYGELSEHILEVCRKHHFDLVICGNHNHSFFSR-------ASCSAKRVIASSEVDVLLVP 138 (142)
T ss_pred HHHh--cCCCeEEEEE--ecCCHHHHHHHHHHHhCCCEEEEcCCcchHHHH-------HHHHHHHHHhcCCCCEEEEe
Confidence 4443 3443322111 345788999999999999999999987643222 22457899999999997763
No 41
>cd01989 STK_N The N-terminal domain of Eukaryotic Serine Threonine kinases. The Serine Threonine kinases are enzymes that belong to a very extensive family of proteins which share a conserved catalytic core common with both serine/threonine and tyrosine protein kinases. The N-terminal domain is homologous to the USP family which has a ATP binding fold. The N-terminal domain is predicted to be involved in ATP binding.
Probab=98.15 E-value=2.3e-05 Score=75.21 Aligned_cols=137 Identities=13% Similarity=0.181 Sum_probs=82.0
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccc-c--ccchhhcHHHHHHHhhhhcCCCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEV-A--RCTEKQADDEDIYEFKFKTMNDE 697 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~-~--~~~e~~~d~~~l~~~~~~~~~~~ 697 (799)
+|++++.|.+..+.|+++|.++|+.++.+++++|++++.... ......... . .++.++..++.++++...... .
T Consensus 1 ~ILVavD~S~~s~~al~~a~~~a~~~~~~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 77 (146)
T cd01989 1 SVAVAVDKDKKSKNALKWALDNLATKGQTIVLVHVHPPITSI--PSSSGKLEVASAYKQEEDKEAKELLLPYRCFCSR-K 77 (146)
T ss_pred CEEEEecCccccHHHHHHHHHhccCCCCcEEEEEeccCcccC--CCCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh-c
Confidence 489999999999999999999999999999999998653210 000000000 0 011122334556665543221 2
Q ss_pred CeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccc-cchhhhhcCCCCcc--eeEE
Q 046529 698 SISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELG-VIGSVLAMSNFSLH--ASVL 772 (799)
Q Consensus 698 ~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG-~iGd~Las~d~~~~--~SvL 772 (799)
.+.+...++..+ +..+.|-+. +.+.||+|+|+++. .|+. .--+| .+.+.++-. ++ ++||
T Consensus 78 ~~~~~~~~~~g~-~~~~~I~~~a~~~~~dlIV~Gs~g~------~~l~------~~~~gssva~~Vi~~---a~~~c~Vl 141 (146)
T cd01989 78 GVQCEDVVLEDD-DVAKAIVEYVADHGITKLVMGASSD------NHFS------MKFKKSDVASSVLKE---APDFCTVY 141 (146)
T ss_pred CCeEEEEEEeCC-cHHHHHHHHHHHcCCCEEEEeccCC------Ccee------ecccCCchhHHHHhc---CCCCceEE
Confidence 344444444322 222333222 44579999999875 2333 22355 688888864 45 7999
Q ss_pred EEee
Q 046529 773 VIQQ 776 (799)
Q Consensus 773 Vvqq 776 (799)
|||.
T Consensus 142 vv~~ 145 (146)
T cd01989 142 VVSK 145 (146)
T ss_pred EEeC
Confidence 9984
No 42
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=98.15 E-value=1.3e-05 Score=74.86 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=78.5
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHH-----HhhhhcC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIY-----EFKFKTM 694 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~-----~~~~~~~ 694 (799)
+||++++.|+++++.|+++|.++|+..+.+++++++.+..... ....... .+.+...++.... +....
T Consensus 3 ~~Ilv~~d~~~~~~~al~~a~~la~~~~~~i~~l~v~~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-- 75 (140)
T PF00582_consen 3 KRILVAIDGSEESRRALRFALELAKRSGAEITLLHVIPPPPQY---SFSAAED--EESEEEAEEEEQARQAEAEEAEA-- 75 (140)
T ss_dssp SEEEEEESSSHHHHHHHHHHHHHHHHHTCEEEEEEEEESCHCH---HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred CEEEEEECCCHHHHHHHHHHHHHHHhhCCeEEEEEeecccccc---ccccccc--cccccccchhhhhhhHHHHHHhh--
Confidence 3999999999999999999999999999999999999754331 0000000 0000000000000 01111
Q ss_pred CCCCeEEEEEEecChHH-HHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEE
Q 046529 695 NDESISYIENVVNNGEE-IVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLV 773 (799)
Q Consensus 695 ~~~~v~y~E~~v~~~~e-~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLV 773 (799)
......+......+..+ +...++ ..++||+|+|+++.. .|.+ --+|.+.+-++.. +.++|||
T Consensus 76 ~~~~~~~~~~~~~~~~~~i~~~~~--~~~~dliv~G~~~~~-----------~~~~-~~~gs~~~~l~~~---~~~pVlv 138 (140)
T PF00582_consen 76 EGGIVIEVVIESGDVADAIIEFAE--EHNADLIVMGSRGRS-----------GLER-LLFGSVAEKLLRH---APCPVLV 138 (140)
T ss_dssp HTTSEEEEEEEESSHHHHHHHHHH--HTTCSEEEEESSSTT-----------STTT-SSSHHHHHHHHHH---TSSEEEE
T ss_pred hccceeEEEEEeeccchhhhhccc--cccceeEEEeccCCC-----------CccC-CCcCCHHHHHHHc---CCCCEEE
Confidence 11223334333444433 333333 567999999999841 2333 3488888888874 6779999
Q ss_pred E
Q 046529 774 I 774 (799)
Q Consensus 774 v 774 (799)
|
T Consensus 139 v 139 (140)
T PF00582_consen 139 V 139 (140)
T ss_dssp E
T ss_pred e
Confidence 7
No 43
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=98.07 E-value=0.00051 Score=73.16 Aligned_cols=254 Identities=16% Similarity=0.112 Sum_probs=147.9
Q ss_pred HHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHH
Q 046529 96 LLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQIL 175 (799)
Q Consensus 96 li~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL 175 (799)
+..++|..|-++|++...+.. ||...+-+.-++++.+++.+++.+++.+ +.- ....+.+-++++.+.-..=..+.
T Consensus 51 l~~~~~~~Ga~I~~k~~~~~l--~kg~~l~~~K~~~~~~~g~~~~~~~g~~-g~~--Gls~laiiaa~~~~Ng~ly~al~ 125 (312)
T PRK12460 51 LGAFLLCMGAQISLKAAPQAL--LKGGVLTITKLGVAIVIGLLVGKFFGAE-GIF--GLSGLAIVAAMSNSNGGLYAALM 125 (312)
T ss_pred HHHHHHHhcCeeeccccchhh--hhhhhhhhHHHHHHHHHHHHHHHHcCcc-ccc--chHHHHHHHHHhcCcHHHHHHHH
Confidence 456789999999999988888 8888888889999999999999998851 111 23556666777777777777888
Q ss_pred HhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCchH
Q 046529 176 TDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSDTH 255 (799)
Q Consensus 176 ~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~~~ 255 (799)
.|+| -++|.|.. +...++|.--+.++++... ++ .+. |.. .
T Consensus 126 ~~yG-~~~d~gA~--~~~sl~~GPf~tm~aLga~-----------------------------gL-A~i-----p~~-~- 165 (312)
T PRK12460 126 GEFG-DERDVGAI--SILSLNDGPFFTMLALGAA-----------------------------GL-ANI-----PIM-A- 165 (312)
T ss_pred HHcC-CHhhhhHH--hhhhhccCcHHHHHHHHHH-----------------------------HH-hcC-----ChH-H-
Confidence 8887 44454432 2222344322222211111 11 000 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHH
Q 046529 256 ISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMF 335 (799)
Q Consensus 256 ~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~ 335 (799)
+ -+.+=|++.|+++.|- .+.+.+.+++= ..+.+|+|-+..|.++|++.+... .+.
T Consensus 166 l-------------------v~lilpILiGmilGNl---d~~~~~~l~~G-i~f~I~f~~f~LG~~lnl~~I~~~-G~~- 220 (312)
T PRK12460 166 L-------------------VAALLPLVLGMILGNL---DPDMRKFLTKG-GPLLIPFFAFALGAGINLSMLLQA-GLA- 220 (312)
T ss_pred H-------------------HHHHHHHHHHHHHhcc---chhhHHHHhcc-ceEeHHHHHHHhcCCeeHHHHHHh-ChH-
Confidence 0 0022244566666642 22344444443 345899999999999999888653 122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHH--HHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHH
Q 046529 336 VLVVLFGFGMSKILITFLVSLLHKIPPKEGLALG--LLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEP 413 (799)
Q Consensus 336 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lg--l~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~p 413 (799)
.+++.++.++.-...++...|++|.+.+-+..+| ..-+.-|...++.+.-.++ - -.+.-+..+.++++.|.+..|
T Consensus 221 GIlL~v~vv~~t~~~~~~i~rllg~~~~~g~li~stAGnAIcgpAAVaAadP~~~--~-~~~~Ataqvaa~vivTail~P 297 (312)
T PRK12460 221 GILLGVLVTIVTGFFNIFADRLVGGTGIAGAAASSTAGNAVATPLAIAAADPSLA--P-VAAAATAQVAASVIVTAILTP 297 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHHHhhHHHHHHHHHHHhchhHH--H-HHHHHHHHHHHHHHHHHHHHH
Confidence 3333333344455556666688898888877777 4433333333332222221 1 123445556666676777777
Q ss_pred HH-HHhhhhh
Q 046529 414 IL-AATYKAT 422 (799)
Q Consensus 414 lv-~~ly~~~ 422 (799)
++ .|++|+.
T Consensus 298 ~~t~~~~k~~ 307 (312)
T PRK12460 298 LLTSWVAKKE 307 (312)
T ss_pred HHHHHHHHHh
Confidence 66 6656543
No 44
>PRK15005 universal stress protein F; Provisional
Probab=98.04 E-value=6.3e-05 Score=71.94 Aligned_cols=137 Identities=16% Similarity=0.123 Sum_probs=78.9
Q ss_pred ceEEEeccCCcc--hHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccc-cchhhcHHHHHHHhhhhcCCC
Q 046529 620 QHLLMLFLGGPD--DREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVAR-CTEKQADDEDIYEFKFKTMND 696 (799)
Q Consensus 620 ~~I~v~f~GG~d--dreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~-~~e~~~d~~~l~~~~~~~~~~ 696 (799)
++|++++.|.++ .+.|+++|.++|+..+++++++|++++................. +..++.-++.++++.++...
T Consensus 3 ~~ILv~~D~s~~~~~~~a~~~a~~la~~~~~~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 81 (144)
T PRK15005 3 RTILVPIDISDSELTQRVISHVEAEAKIDDAEVHFLTVIPSLPYYASLGLAYSAELPAMDDLKAEAKSQLEEIIKKFKL- 81 (144)
T ss_pred ccEEEecCCCchhHHHHHHHHHHHHHhccCCeEEEEEEEccCcccccccccccccchHHHHHHHHHHHHHHHHHHHhCC-
Confidence 389999999887 47999999999999999999999986422100000000000000 11122223445555544322
Q ss_pred CCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 697 ESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 697 ~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
..+.+.. .+..|.- .+.|.+. +.++||+|+|++++ |+. ..=+|...+-+... ++++||||
T Consensus 82 ~~~~~~~-~v~~G~p-~~~I~~~a~~~~~DLIV~Gs~~~-------~~~------~~llGS~a~~vl~~---a~cpVlvV 143 (144)
T PRK15005 82 PTDRVHV-HVEEGSP-KDRILELAKKIPADMIIIASHRP-------DIT------TYLLGSNAAAVVRH---AECSVLVV 143 (144)
T ss_pred CCCceEE-EEeCCCH-HHHHHHHHHHcCCCEEEEeCCCC-------Cch------heeecchHHHHHHh---CCCCEEEe
Confidence 2222332 2334432 2333322 45799999998732 333 22468888888874 77899998
Q ss_pred e
Q 046529 775 Q 775 (799)
Q Consensus 775 q 775 (799)
.
T Consensus 144 r 144 (144)
T PRK15005 144 R 144 (144)
T ss_pred C
Confidence 3
No 45
>PRK09982 universal stress protein UspD; Provisional
Probab=98.02 E-value=1.9e-05 Score=75.73 Aligned_cols=131 Identities=16% Similarity=0.251 Sum_probs=74.2
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccc--cchhhcHHHHHHHhhhhcCCCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVAR--CTEKQADDEDIYEFKFKTMNDE 697 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~--~~e~~~d~~~l~~~~~~~~~~~ 697 (799)
++|+++..|+++.+.|+++|.++|+.++++++++|++++.... ..........+ +..++..++.+++.+..... .
T Consensus 4 k~ILvavD~S~~s~~al~~A~~lA~~~~a~l~llhV~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~ 80 (142)
T PRK09982 4 KHIGVAISGNEEDALLVNKALELARHNDAHLTLIHIDDGLSEL--YPGIYFPATEDILQLLKNKSDNKLYKLTKNIQW-P 80 (142)
T ss_pred eEEEEEecCCcchHHHHHHHHHHHHHhCCeEEEEEEccCcchh--chhhhccchHHHHHHHHHHHHHHHHHHHHhcCC-C
Confidence 3899999999999999999999999999999999998642210 00000000000 11122233456666554321 2
Q ss_pred CeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 698 SISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 698 ~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.+. ..+..|. ..+.|-+. +.+.||+|+|+++ .|++ +|- | +.+-+.. .++.+||||.
T Consensus 81 ~~~---~~v~~G~-p~~~I~~~A~~~~aDLIVmG~~~-------~~~~--~~~-----~-va~~V~~---~s~~pVLvv~ 138 (142)
T PRK09982 81 KTK---LRIERGE-MPETLLEIMQKEQCDLLVCGHHH-------SFIN--RLM-----P-AYRGMIN---KMSADLLIVP 138 (142)
T ss_pred cce---EEEEecC-HHHHHHHHHHHcCCCEEEEeCCh-------hHHH--HHH-----H-HHHHHHh---cCCCCEEEec
Confidence 222 2233332 22222222 5679999999753 2444 332 3 3333333 3778999984
No 46
>PRK10116 universal stress protein UspC; Provisional
Probab=97.96 E-value=3.8e-05 Score=73.33 Aligned_cols=131 Identities=15% Similarity=0.164 Sum_probs=76.4
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccc-cc--cchhhcHHHHHHHhhhhcCCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEV-AR--CTEKQADDEDIYEFKFKTMND 696 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~-~~--~~e~~~d~~~l~~~~~~~~~~ 696 (799)
++|+++..+.++.+.|+++|.++|+..++++++++++++.... .. ..... .+ +..++.-+++++++..+.
T Consensus 4 ~~ILv~~D~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 76 (142)
T PRK10116 4 SNILVAVAVTPESQQLLAKAVSIARPVNGKISLITLASDPEMY---NQ-FAAPMLEDLRSVMQEETQSFLDKLIQDA--- 76 (142)
T ss_pred ceEEEEccCCcchHHHHHHHHHHHHHhCCEEEEEEEccCcccc---hh-hhHHHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 3999999999999999999999999999999999997542110 00 00000 00 111111234455544332
Q ss_pred CCeEEEEEEecChHHHHHHHHhh-cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 697 ESISYIENVVNNGEEIVAAIKDL-SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 697 ~~v~y~E~~v~~~~e~~~~i~~~-~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.+...+..+..|......++.. +.++||+|+|.++. .+++ .| +...+-++. .++++||||-
T Consensus 77 -~~~~~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~~~------~~~~--~~------~s~a~~v~~---~~~~pVLvv~ 138 (142)
T PRK10116 77 -DYPIEKTFIAYGELSEHILEVCRKHHFDLVICGNHNH------SFFS--RA------SCSAKRVIA---SSEVDVLLVP 138 (142)
T ss_pred -CCCeEEEEEecCCHHHHHHHHHHHhCCCEEEEcCCcc------hHHH--HH------HHHHHHHHh---cCCCCEEEEe
Confidence 1222233444443333333332 45799999999975 2344 22 223445554 4788999984
No 47
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=97.84 E-value=5.4e-05 Score=72.56 Aligned_cols=133 Identities=14% Similarity=0.178 Sum_probs=75.3
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccc--cchhhcHHHHHHHhhhhcCCCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVAR--CTEKQADDEDIYEFKFKTMNDE 697 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~--~~e~~~d~~~l~~~~~~~~~~~ 697 (799)
+||+++..|.+.++.|+++|..+|+..+++++++++..+.... ..........+ +..++.-.+.++++..+.
T Consensus 4 ~~ILvavD~S~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---- 77 (144)
T PRK15118 4 KHILIAVDLSPESKVLVEKAVSMARPYNAKVSLIHVDVNYSDL--YTGLIDVNLGDMQKRISEETHHALTELSTNA---- 77 (144)
T ss_pred eEEEEEccCChhHHHHHHHHHHHHHhhCCEEEEEEEccChhhh--hhhhhhcchHHHHHHHHHHHHHHHHHHHHhC----
Confidence 3999999999999999999999999999999999995321110 00000000000 001111123344443321
Q ss_pred CeEEEEEEecChHHHHHHHHhh-cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEee
Q 046529 698 SISYIENVVNNGEEIVAAIKDL-SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQ 776 (799)
Q Consensus 698 ~v~y~E~~v~~~~e~~~~i~~~-~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq 776 (799)
.+...+..+..|......++.. +.++||+|+|++++ ++. .+|-..+-+.. .++++||||..
T Consensus 78 ~~~~~~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~~~-------~~~--------~lgSva~~v~~---~a~~pVLvv~~ 139 (144)
T PRK15118 78 GYPITETLSGSGDLGQVLVDAIKKYDMDLVVCGHHQD-------FWS--------KLMSSARQLIN---TVHVDMLIVPL 139 (144)
T ss_pred CCCceEEEEEecCHHHHHHHHHHHhCCCEEEEeCccc-------HHH--------HHHHHHHHHHh---hCCCCEEEecC
Confidence 1222333443343222233322 56799999999952 112 25655666655 37789999985
No 48
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=97.84 E-value=0.00022 Score=65.73 Aligned_cols=128 Identities=17% Similarity=0.229 Sum_probs=78.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
+|++++.+++..+.++++|.++|+..+.++|++++.++......... +.+.+..++.++++..... ...+.
T Consensus 1 ~ilv~i~~~~~~~~~l~~a~~~a~~~~~~i~~l~v~~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~-~~~~~ 71 (130)
T cd00293 1 RILVAVDGSEESERALRWAARLARRLGAELVLLHVVDPPPSSAAELA--------ELLEEEARALLEALREALA-EAGVK 71 (130)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCCCCcchhHH--------HHHHHHHHHHHHHHHHHHh-cCCCc
Confidence 58899999999999999999999999999999999865432100000 1122233456666665431 12233
Q ss_pred EEEEEecC--hHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 701 YIENVVNN--GEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 701 y~E~~v~~--~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
.....+.. ..++.+.++ ..++|++|+|.++.. .|.+ --.|.+.+-|... ++.+||+|
T Consensus 72 ~~~~~~~~~~~~~i~~~~~--~~~~dlvvig~~~~~-----------~~~~-~~~~~~~~~ll~~---~~~pvliv 130 (130)
T cd00293 72 VETVVLEGDPAEAILEAAE--ELGADLIVMGSRGRS-----------GLRR-LLLGSVAERVLRH---APCPVLVV 130 (130)
T ss_pred eEEEEecCCCHHHHHHHHH--HcCCCEEEEcCCCCC-----------ccce-eeeccHHHHHHhC---CCCCEEeC
Confidence 33333322 223333333 456899999998752 2322 3567777777754 55677764
No 49
>PRK15456 universal stress protein UspG; Provisional
Probab=97.79 E-value=0.00038 Score=66.55 Aligned_cols=133 Identities=18% Similarity=0.177 Sum_probs=79.2
Q ss_pred ceEEEeccCCc--chHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCcc-ccc--cchhhcHHHHHHHhhhhcC
Q 046529 620 QHLLMLFLGGP--DDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSE-VAR--CTEKQADDEDIYEFKFKTM 694 (799)
Q Consensus 620 ~~I~v~f~GG~--ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~-~~~--~~e~~~d~~~l~~~~~~~~ 694 (799)
+||++++.|.+ .++.|+++|.++|+.. .+++++|+.++.... ....... ..+ +..++.-++.++++..+..
T Consensus 3 ~~ILv~vD~S~~~~s~~al~~A~~la~~~-~~l~llhv~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 78 (142)
T PRK15456 3 KTIIMPVDVFEMELSDKAVRHAEFLAQDD-GVIHLLHVLPGSASL---SLHRFAADVRRFEEHLQHEAEERLQTMVSHFT 78 (142)
T ss_pred ccEEEeccCCchhHHHHHHHHHHHHHhcC-CeEEEEEEecCcccc---cccccccchhhHHHHHHHHHHHHHHHHHHHhC
Confidence 39999999984 7999999999999875 589999998653210 0000000 000 1112333345666654432
Q ss_pred CCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEE
Q 046529 695 NDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVL 772 (799)
Q Consensus 695 ~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvL 772 (799)
. +.+.+. ..+..|. ..+.|.+. +.+.||+|+|++++ |+. ..=+|-..+-++.. ++++||
T Consensus 79 ~-~~~~v~-~~v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~-------~~~------~~llGS~a~~v~~~---a~~pVL 139 (142)
T PRK15456 79 I-DPSRIK-QHVRFGS-VRDEVNELAEELGADVVVIGSRNP-------SIS------THLLGSNASSVIRH---ANLPVL 139 (142)
T ss_pred C-CCcceE-EEEcCCC-hHHHHHHHHhhcCCCEEEEcCCCC-------Ccc------ceecCccHHHHHHc---CCCCEE
Confidence 2 223322 3333442 23333322 45799999999864 122 22479999998875 778999
Q ss_pred EEe
Q 046529 773 VIQ 775 (799)
Q Consensus 773 Vvq 775 (799)
||.
T Consensus 140 vV~ 142 (142)
T PRK15456 140 VVR 142 (142)
T ss_pred EeC
Confidence 983
No 50
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=97.75 E-value=0.00025 Score=65.95 Aligned_cols=121 Identities=15% Similarity=0.155 Sum_probs=75.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
||++++.|.+.+++|+++|.++|++.+++++++++.+++... .. + + .++.++++++..... .+.
T Consensus 1 ~Ilv~vd~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~~---~~--------~---~-~~~~l~~~~~~~~~~-~~~ 64 (124)
T cd01987 1 RILVCISGGPNAERLIRRAARLADRLKAPWYVVYVETPRLNR---LS--------E---A-ERRRLAEALRLAEEL-GAE 64 (124)
T ss_pred CEEEEECCCcchHHHHHHHHHHHHHhCCCEEEEEEecCcccc---CC--------H---H-HHHHHHHHHHHHHHc-CCE
Confidence 589999999999999999999999999999999998754320 00 1 1 123344443322111 233
Q ss_pred EEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 701 YIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 701 y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
+. .+.++ +..+.|.+. +.+.||+|+|.++.. ++. .--+|-..+-++-.- .+..|||+
T Consensus 65 ~~--~~~~~-~~~~~I~~~~~~~~~dllviG~~~~~------~~~------~~~~Gs~~~~v~~~a--~~~~v~v~ 123 (124)
T cd01987 65 VV--TLPGD-DVAEAIVEFAREHNVTQIVVGKSRRS------RWR------ELFRGSLVDRLLRRA--GNIDVHIV 123 (124)
T ss_pred EE--EEeCC-cHHHHHHHHHHHcCCCEEEeCCCCCc------hHH------HHhcccHHHHHHHhC--CCCeEEEe
Confidence 32 22222 223333322 456899999999751 222 335788888887642 36788886
No 51
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=97.57 E-value=0.00088 Score=64.05 Aligned_cols=139 Identities=15% Similarity=0.173 Sum_probs=88.3
Q ss_pred ceEEEEee-cCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCC---CCCCcchhhHHHHH
Q 046529 442 FRIMACIH-STRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFND---SCPMQATEAEQFKK 517 (799)
Q Consensus 442 ~riLvcv~-~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~ 517 (799)
.+|+++++ +.+........+...+.....+ ++++++++-............. .. .........++..+
T Consensus 6 ~~il~~~d~~s~~~~~a~~~a~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~ 77 (154)
T COG0589 6 KKILVAVDVGSEAAEKALEEAVALAKRLGAP--LILLVVIDPLEPTALVSVALAD------APIPLSEEELEEEAEELLA 77 (154)
T ss_pred ceEEEEeCCCCHHHHHHHHHHHHHHHhcCCe--EEEEEEeccccccccccccccc------chhhhhHHHHHHHHHHHHH
Confidence 57899998 8888888888777777655444 4577777655433211110000 00 00001233455666
Q ss_pred HHHHHHHhcCCcee-EEEEEEecCCCCh-hHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCce
Q 046529 518 AFENYEKTSNNAVN-VHTLTSVSSHESM-HEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSV 595 (799)
Q Consensus 518 af~~~~~~~~~~v~-v~~~t~vs~~~~m-~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsV 595 (799)
..+...+. ..+. ++...... +. .+.|+..|.+.++|+|++|-+++++.++-+ ++++.++|++++||||
T Consensus 78 ~~~~~~~~--~~~~~~~~~~~~g---~~~~~~i~~~a~~~~adliV~G~~g~~~l~~~l-----lGsvs~~v~~~~~~pV 147 (154)
T COG0589 78 EAKALAEA--AGVPVVETEVVEG---SPSAEEILELAEEEDADLIVVGSRGRSGLSRLL-----LGSVAEKVLRHAPCPV 147 (154)
T ss_pred HHHHHHHH--cCCCeeEEEEecC---CCcHHHHHHHHHHhCCCEEEECCCCCcccccee-----eehhHHHHHhcCCCCE
Confidence 55555544 3333 23333333 44 699999999999999999999887766532 7888999999999998
Q ss_pred EEE
Q 046529 596 CIF 598 (799)
Q Consensus 596 gIl 598 (799)
-++
T Consensus 148 lvv 150 (154)
T COG0589 148 LVV 150 (154)
T ss_pred EEE
Confidence 654
No 52
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=97.29 E-value=0.026 Score=60.06 Aligned_cols=170 Identities=18% Similarity=0.126 Sum_probs=107.4
Q ss_pred HHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc-Ccchh-hhhhHHHHHHHHHhhccHHHHHH
Q 046529 96 LLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG-ESQEF-ITQGGYMFCAVALTATNFQELTQ 173 (799)
Q Consensus 96 li~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~-~~~~~-~~~~~~l~l~~~ls~Ts~pvv~~ 173 (799)
+..++|-.|-++|++...+.. ||...+-+.-+++..+++.++..+++. +.... ......+.+-++++.+....=..
T Consensus 51 ig~~l~~~Ga~I~~k~~~~~l--kkg~~ll~~K~~~~~~lgl~~~~~fg~~Gi~~g~f~GlS~LAiiaa~~~~NggLY~a 128 (314)
T PF03812_consen 51 IGVFLFCMGAQIDLKSAGKVL--KKGGVLLLVKFIIGALLGLLVGKFFGPEGIQSGFFLGLSALAIIAAMTNSNGGLYLA 128 (314)
T ss_pred HHHHHHHhccccchhhhhHHH--HhhhHHHHHHHHHHHHHHHHHHHHcCccccccccccchHHHHHHHHHhcCCHHHHHH
Confidence 456788999999999999988 999999999999999999999999875 21000 01235667777788888777788
Q ss_pred HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 046529 174 ILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSD 253 (799)
Q Consensus 174 iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~ 253 (799)
+..|++ -++|.|.. +...++|.-.+.++++-.+ | ..+
T Consensus 129 L~~~yG-d~~D~gA~--~i~sl~~GPf~tMl~LG~s-------------------------------------G---~a~ 165 (314)
T PF03812_consen 129 LMGQYG-DEEDVGAF--SILSLNDGPFFTMLALGAS-------------------------------------G---LAN 165 (314)
T ss_pred HHHHhC-CHHHhHHH--HHHHhhhhHHHHHHHHhhc-------------------------------------c---ccC
Confidence 888877 34444322 2222333221111111000 0 000
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCc
Q 046529 254 THISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSH 330 (799)
Q Consensus 254 ~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~ 330 (799)
..+. -+-+.+=+++.|+++.| +.+++.+.+.+- ..+++|+|-...|..+|+..+...
T Consensus 166 ip~~----------------~lv~~llP~iiG~iLGN---LD~~~r~fl~~~-~~~lIPF~~f~lGa~inl~~i~~a 222 (314)
T PF03812_consen 166 IPWM----------------SLVAALLPIIIGMILGN---LDPDFRKFLAPG-VPILIPFFGFALGAGINLSNIIKA 222 (314)
T ss_pred CCHH----------------HHHHHHHHHHHHHHHhc---CCHHHHHHHhcC-CCeeeehhhhhhcCCCCHHHHHHh
Confidence 0000 00113346677777775 344555556655 688999999999999999887654
No 53
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=97.12 E-value=0.0028 Score=69.92 Aligned_cols=39 Identities=23% Similarity=0.280 Sum_probs=36.0
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCC--CeEEEEEEeecC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHP--NVKLTVVRFLPG 658 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~--~v~ltvvr~~~~ 658 (799)
+||++++.|.+..+.|+++|..+|+.. +++++++|+++.
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~ 46 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASG 46 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecC
Confidence 399999999999999999999999884 699999999864
No 54
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=97.08 E-value=0.44 Score=53.37 Aligned_cols=104 Identities=17% Similarity=0.138 Sum_probs=71.7
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046529 278 AIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLL 357 (799)
Q Consensus 278 ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~ 357 (799)
++-....|++.. .+|..+.+ .--+.+ ..+++-+||+.+|++.|+..+.+. . ..+++.++.+..-.+..++.+|+
T Consensus 243 il~~tt~~l~~~-~~~~~~~l-~g~~~l-g~~lly~ffa~IGa~a~i~~l~~a--p-~~~l~~~i~l~iH~~l~l~~~kl 316 (378)
T PF05684_consen 243 ILTVTTLGLATS-FPPFRKLL-RGASEL-GTFLLYLFFAVIGASADISELLDA--P-SLFLFGFIILAIHLLLMLILGKL 316 (378)
T ss_pred HHHHHHHHHHHh-ccchhhcC-CchHHH-HHHHHHHHHHHHccccCHHHHHHh--H-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 444556666665 45665555 444555 678888999999999999988763 2 23344455567788888899999
Q ss_pred hCCChHHHHHHHHHHhhhhhHHHHHHhhhcc
Q 046529 358 HKIPPKEGLALGLLMNTKGLLALIVLNTACN 388 (799)
Q Consensus 358 ~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~ 388 (799)
+|+|..+-..-+- -|.-|.........++.
T Consensus 317 ~k~~l~~~~vAS~-AnIGGpaTA~a~A~a~~ 346 (378)
T PF05684_consen 317 FKIDLFELLVASN-ANIGGPATAPAVAAAKG 346 (378)
T ss_pred HCCCHHHHHHHhh-cccCCcchHHHHHHhcC
Confidence 9999977655444 57767666655555554
No 55
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=97.05 E-value=0.16 Score=56.71 Aligned_cols=92 Identities=12% Similarity=0.146 Sum_probs=55.5
Q ss_pred hhHHHHHHHHHhhcCCCC------CchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHH
Q 046529 275 AHSAIGAFTLGVIMPKKQ------PITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKI 348 (799)
Q Consensus 275 ~~~ilGaf~aGl~lp~~~------~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~ 348 (799)
+....+|++.|+++.+-. +..++..+++ .++.+-+|.+..=+.+++..+.+. ..++.+++++-.++.=+
T Consensus 247 lP~f~~ami~g~ivrn~~~~~~~~~id~~~i~~I----~~~sL~~fl~~almsl~l~~l~~~-a~Plliil~~q~i~~~~ 321 (368)
T PF03616_consen 247 LPLFVGAMIVGIIVRNILDKTGKYKIDRKTIDRI----SGISLDLFLAMALMSLKLWVLADY-ALPLLIILAVQTILMVL 321 (368)
T ss_pred CchHHHHHHHHHHHHHHHHHhCcccCCHHHHHHH----HHHHHHHHHHHHHHhccHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 456789999999987521 1233344444 555566666666677888877653 22233333444444455
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHH
Q 046529 349 LITFLVSLLHKIPPKEGLALGLLM 372 (799)
Q Consensus 349 ~~~~l~~~~~~~~~~e~~~lgl~l 372 (799)
...++..|.+|-++ |+..++...
T Consensus 322 f~~fv~fr~~gkdy-daavm~~G~ 344 (368)
T PF03616_consen 322 FAYFVTFRVMGKDY-DAAVMSAGF 344 (368)
T ss_pred HHHHHhhhhhCCCh-hHHHHhhhh
Confidence 66677788888775 666655433
No 56
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=96.98 E-value=0.034 Score=58.92 Aligned_cols=255 Identities=15% Similarity=0.116 Sum_probs=136.7
Q ss_pred HHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc-Ccchh-hhhhHHHHHHHHHhhccHHHHHH
Q 046529 96 LLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG-ESQEF-ITQGGYMFCAVALTATNFQELTQ 173 (799)
Q Consensus 96 li~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~-~~~~~-~~~~~~l~l~~~ls~Ts~pvv~~ 173 (799)
+..++|..|-++|++...+.. ||...+-+.-++++.+++.+++.+++. +.... ......+.+-++++.|.-..=..
T Consensus 51 l~~~l~~~Ga~I~~k~~g~~l--~kg~~l~~~K~~i~~~~g~~~~~~~g~~Gi~~g~~~GlS~LAiiaA~~nsNggLY~a 128 (314)
T TIGR00793 51 LAVWFFCMGASIDLSATGTVL--RKSGTLVVTKIAVAWVVAAIASRIIPEDGVEVGFFAGLSTLALVAAMDMTNGGLYAS 128 (314)
T ss_pred HHHHHHHhCCeeeecccchhh--hhcceeeeHHHHHHHHHHHHHHHHcCcCCccccceeccHHHHHHHHHhCCcHHHHHH
Confidence 356788999999999988887 888888888899999999999999885 21000 00224566666677777666677
Q ss_pred HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCc
Q 046529 174 ILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGDNNLSD 253 (799)
Q Consensus 174 iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~~~~~~ 253 (799)
+..|++ -++|.|.. +...++|.--+.++++-.+ | ..+
T Consensus 129 L~~qyG-d~~D~gA~--~i~sl~~GPf~TMi~LG~s-------------------------------------G---lA~ 165 (314)
T TIGR00793 129 IMQQYG-TKEEAGAF--VLMSLESGPLMTMVILGTA-------------------------------------G---IAS 165 (314)
T ss_pred HHHHcC-CHhhhhhh--hhhhhccCcHHHHHHHhhc-------------------------------------c---CCC
Confidence 777777 44444432 2222333221111111000 1 011
Q ss_pred hHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhH
Q 046529 254 THISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPW 333 (799)
Q Consensus 254 ~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~ 333 (799)
..+.. +-+.+=+++.|+++.| +.+++.+.+.+- ...++|+|-...|..+|++.+......
T Consensus 166 ip~~~----------------lv~~ilPlliG~ilGN---LD~~~r~fl~~~-~~~lIpFf~FaLGaginl~~i~~aGl~ 225 (314)
T TIGR00793 166 FEPHV----------------FVGAVLPFLVGFALGN---LDPELRDFFSKA-VQTLIPFFAFALGNTIDLGVIIQTGLL 225 (314)
T ss_pred CCHHH----------------HHHHHHHHHHHHHHhc---CCHHHHHHhccC-CCeeeehhhhhhcCCCCHHHHHHhCcc
Confidence 00000 0113336677777775 334555555555 678899999999999999877543222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC-CChHHHHHHHHHHhhhhhH---HHHHHhhhccCCCCCCCchhHHHHHHHHHHH
Q 046529 334 MFVLVVLFGFGMSKILITFLVSLLHK-IPPKEGLALGLLMNTKGLL---ALIVLNTACNRKDLVDEAFPPTIFALFVMTC 409 (799)
Q Consensus 334 ~~~~~ii~~~~~~K~~~~~l~~~~~~-~~~~e~~~lgl~l~~kG~v---~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~ 409 (799)
++++.+. ..+.--...++.-|+.+ -+..-+...| ++-|.- ..+++..-.+..- -.+.-+..+.++++.|.
T Consensus 226 GIlLGl~--v~~vtG~~~~~~dr~~~g~~g~aG~A~s---stAGnAvatPaavA~adPs~~~-~a~~ATaqvAaavivTa 299 (314)
T TIGR00793 226 GILLGVS--VIILTGIPLILADKFIGGGDGTAGIAAS---SSAGAAVATPVLIAEMVPAFKP-VAPAATALVATSVIVTS 299 (314)
T ss_pred hHHHHHH--HHHHHhHHHHHHHHHhcCCCCchhhHHH---HHHHHhhhhHHHHHHhChhhhh-hHHHHHHHHHHHHHHHH
Confidence 2222121 12223334455566553 2222222222 222221 2222222222111 12344555666677788
Q ss_pred HHHHHH-HHhhhh
Q 046529 410 VIEPIL-AATYKA 421 (799)
Q Consensus 410 i~~plv-~~ly~~ 421 (799)
+..|++ .|.+|+
T Consensus 300 iL~Pilta~~~kr 312 (314)
T TIGR00793 300 LLVPIATVWWSKK 312 (314)
T ss_pred HHHHHHHHHHHHh
Confidence 877777 555543
No 57
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=96.92 E-value=0.29 Score=53.81 Aligned_cols=128 Identities=9% Similarity=0.044 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHHHHHhc-----hhHHHHHHHHHhhcCCCCCc--hhHHHHHHhhhhhhhhhhHHHHHhhhccccccccC
Q 046529 257 SFVLAGVLLCGFITDGCG-----AHSAIGAFTLGVIMPKKQPI--TNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSS 329 (799)
Q Consensus 257 ~~il~~~l~~~~~ae~~G-----~~~ilGaf~aGl~lp~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~ 329 (799)
.++.+.+.+..++.+.++ +....++++.|+++.+--+. ...+.++.-+.+.+.-+-+|....=|++.+..+.+
T Consensus 225 ~~i~i~~~vG~~i~~~l~~~~~~lP~fv~~lfvgiIvrni~~~~~~~~v~~~~v~~ig~vsL~lflamALmSlkLweL~~ 304 (404)
T COG0786 225 AIIAICLAVGKIINQLLKSLGLALPLFVMCLFVGVILRNILDLLKKYRVFRRAVDVIGNVSLSLFLAMALMSLKLWELAD 304 (404)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHhHHHHhccccccHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh
Confidence 334444445566777766 46788999999999863221 11234444444467788888888888999888875
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHh-hhhhHHHHHHhh
Q 046529 330 HKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMN-TKGLLALIVLNT 385 (799)
Q Consensus 330 ~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~-~kG~v~l~~~~~ 385 (799)
. ....++++.+-..+.-+.+.++..|..|-++..+..-+.-+. .-|...-+++++
T Consensus 305 l-~lpl~viL~vQ~i~m~lfa~fvtfr~mG~~YdAaV~~~G~~G~gLGATPtAianM 360 (404)
T COG0786 305 L-ALPLLVILAVQTIVMALFAIFVTFRLMGKNYDAAVLAAGHCGFGLGATPTAIANM 360 (404)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHHHHHhCcchhHHHHhcccccCccCCcHHHHHhh
Confidence 4 334445555555566777788888999988777665333221 223444444444
No 58
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.68 E-value=0.041 Score=65.80 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC-CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhH
Q 046529 255 HISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPK-KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPW 333 (799)
Q Consensus 255 ~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~ 333 (799)
.+.+.+..+.+...++..+|+++++|=.++|+++.. .-..-.. .+.++.+ ..+-+.++...+|+.+|+..+... .
T Consensus 9 ~~~~~l~~a~i~~~l~~rl~lp~vlgyilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LlF~iGLEl~~~~l~~~--~ 84 (621)
T PRK03562 9 QALIYLGAAVLIVPIAVRLGLGSVLGYLIAGCIIGPWGLRLVTD-VESILHF-AEFGVVLMLFVIGLELDPQRLWKL--R 84 (621)
T ss_pred HHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhCcccccCCCC-HHHHHHH-HHHHHHHHHHHHHhCcCHHHHHHH--H
Confidence 345566667778888899999999999999999852 1111111 2335555 677888888999999999877542 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCC
Q 046529 334 MFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVD 394 (799)
Q Consensus 334 ~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~ 394 (799)
..++.+-...++.-++..+..++++|.+|..++.+|..++.-.. . +...+..|.+.++.
T Consensus 85 ~~~~~~g~~qv~~~~~~~~~~~~~~g~~~~~al~ig~~la~SSt-a-iv~~~L~e~~~l~t 143 (621)
T PRK03562 85 RSIFGGGALQMVACGGLLGLFCMLLGLRWQVALLIGLGLALSST-A-IAMQAMNERNLMVT 143 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH-H-HHHHHHHHhccccC
Confidence 11222222222223333445667789999999998887765543 2 22444445554443
No 59
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=96.66 E-value=0.018 Score=63.62 Aligned_cols=111 Identities=12% Similarity=0.118 Sum_probs=73.7
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
.|||+|++.+++....++-+-.+++..+...+++++|+++...... .. + ......+++++..++
T Consensus 6 kkILVavDGSe~S~~Al~~AielA~~~g~~AeL~lL~Vv~~~~~~~------~~-------~---~~~~~~eelle~~~~ 69 (357)
T PRK12652 6 NRLLVPVADSVTVRQTVAYAVESAEEAAETPTVHLVAAASGRAVDP------EG-------Q---DELAAAEELLERVEV 69 (357)
T ss_pred CeEEEEeCCCHHHHHHHHHHHHHHHhcCCCCEEEEEEEecCccccc------ch-------h---HHHHHHHHHHHHHHH
Confidence 5799999999999999998888875532235789999997422110 00 0 012334555555554
Q ss_pred HHHh----cCCceeEEEEEEec-----CCCChhHHHHHHHHhcCccEEEEccCCCc
Q 046529 522 YEKT----SNNAVNVHTLTSVS-----SHESMHEDICCLAEDKRVAFIIIPYIRPL 568 (799)
Q Consensus 522 ~~~~----~~~~v~v~~~t~vs-----~~~~m~~dI~~~A~e~~a~lIIlp~h~~~ 568 (799)
..+. ...+++++..+... ...+.++.|++.|++.++|+|+|+=..+.
T Consensus 70 ~~~~~l~~~~~gV~ve~~vv~~~~~~~~~G~pae~Iv~~Aee~~aDLIVm~~~~~~ 125 (357)
T PRK12652 70 WATEDLGDDASSVTIETALLGTDEYLFGPGDYAEVLIAYAEEHGIDRVVLDPEYNP 125 (357)
T ss_pred HHHHhhhcccCCCceEEEEEeccccccCCCCHHHHHHHHHHHcCCCEEEECCCCCC
Confidence 4332 11367777666542 11488999999999999999999965443
No 60
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=96.64 E-value=0.26 Score=53.50 Aligned_cols=313 Identities=14% Similarity=0.132 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHHHHHhccc-------CCChhhhhhee-------eccCCChHHHHHHHHHHHHHHHHHHhh------ccC
Q 046529 49 QLAYVLFINHLLVAILKPL-------RQPPIVGQILE-------MFPYKSVMLLETYAYIALLFYLFLIGL------DMD 108 (799)
Q Consensus 49 qi~lil~~s~~~~~ll~rl-------~~P~ivg~Ila-------l~p~~~~~~l~~la~lGli~~lFl~Gl------e~d 108 (799)
.+++++++..+++++-+|+ |=|.+...+.+ ++|++..+....+-.=+=.+.+|.+++ .||
T Consensus 50 ~favm~vlG~llg~IG~riPI~nk~iGG~aIl~~fvaa~~v~~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmn 129 (438)
T COG3493 50 GFAVMFVLGALLGEIGKRIPIVNKYIGGGAILALFVAAYLVFYNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMN 129 (438)
T ss_pred HHHHHHHHHHHHHHhcccCcchhhccCCchHHHHHHHHHHHHhccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhcc
Confidence 3445556677777776664 33555555555 566555444444433334445666554 677
Q ss_pred hHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHh-ccccCChhHH
Q 046529 109 INLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTD-LRILHLDIGR 187 (799)
Q Consensus 109 ~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~e-lkl~~s~~g~ 187 (799)
.+.+-|.. .+-....+.+++...+.|.+++..++.+..........-.+|--...-+.|. +.+-++ .+..+.+.=.
T Consensus 130 RklLIk~~--~~~i~~il~g~v~A~~~g~lVG~~~G~~~~d~~m~~vlPIM~GG~GaGavPL-S~iYs~itg~s~~~~~s 206 (438)
T COG3493 130 RKLLIKSL--KRYIPPILAGMVGAAAVGILVGLLFGLSFQDTMMYVVLPIMGGGMGAGAVPL-SEIYSSITGGSQEEYFS 206 (438)
T ss_pred HHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHhCCChHHeeeeEEeeeccCCCCCCcccH-HHHHHHHcCCCHHHHHH
Confidence 77777777 7777777777777777777777777653111000000001111111111121 111111 2333444555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC--C--------------hHHH-----------HHHHHHHHHHHHHHHHHHHHHHH
Q 046529 188 IALSSALLSDLFTWMLLLACILVSN--P--------------SQYY-----------EVLSTVGFILICVVVVRPALSWV 240 (799)
Q Consensus 188 lals~a~v~D~~~~ill~~~~~~~~--~--------------~~~~-----------~~~~~~~~~~~~~~v~r~~~~~l 240 (799)
.++.+..+..+++++.-++.--+.. + .... .....-.....++|....++..+
T Consensus 207 ~lipal~igNvfAIi~aall~~iG~K~psltGnG~Lv~~~~~~~~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf 286 (438)
T COG3493 207 QLIPALTIGNVFAIICAALLNKIGKKKPSLTGNGELVRSKSKEATEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKF 286 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcccCCCccCCceEEeccccchhhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6666677777777666555443311 0 0000 00111111122223333332222
Q ss_pred HHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhh
Q 046529 241 FCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGF 320 (799)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl 320 (799)
+. .| ..+...+ +...+-...+ .+|++.+.+. .+--+.|.+.+.-|+.+. +|.
T Consensus 287 ~~-~P-------~~va~MI-----il~a~lk~~n------------lvp~~i~~GA--~~l~~F~sk~~t~~Lm~g-iGv 338 (438)
T COG3493 287 IG-LP-------GPVAFMI-----ILVAILKAAN------------LVPKEIEEGA--KQLSQFFSKNLTWPLMAG-IGV 338 (438)
T ss_pred hc-CC-------chHHHHH-----HHHHHHHHhC------------cCCHHHHHHH--HHHHHHHHHhhHHHHHHh-hhh
Confidence 11 11 1111111 1111112222 2343222221 112233445555566554 455
Q ss_pred c-cccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH-HHHHHhhhh-hHHHHHHhhhccCCCCC
Q 046529 321 R-SNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLA-LGLLMNTKG-LLALIVLNTACNRKDLV 393 (799)
Q Consensus 321 ~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~-lgl~l~~kG-~v~l~~~~~~~~~~ii~ 393 (799)
. +|+..+.+..+|.. +++.+..+++-..+.++.+|+.|+-+-|+.. -|+.|+.+| .-+++++..+-..++++
T Consensus 339 ~ytdl~ev~~alt~~~-vii~~~vVl~~i~~~~f~grl~~~YPVEaAI~aglC~a~~GGtGDvaVLsAa~RM~Lmp 413 (438)
T COG3493 339 AYTDLNEVAAALTWQN-VIIALSVVLGAILGGAFVGRLMGFYPVEAAITAGLCMANMGGTGDVAVLSAADRMELMP 413 (438)
T ss_pred ccccHHHHHHHhchhH-HHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHhHHhcCCCCCCchHHhhhcchhcccc
Confidence 5 88887766545553 3344455677888999999999987777665 559998877 56777777666555553
No 61
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=96.44 E-value=1.8 Score=46.87 Aligned_cols=148 Identities=16% Similarity=0.074 Sum_probs=77.8
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchh---hHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Q 046529 85 VMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKV---VSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAV 161 (799)
Q Consensus 85 ~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~---~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~ 161 (799)
-..++..-...+.++||..|+.+..+.+++.. ++. ......++++-=+++++++..+..++ . .....++++.
T Consensus 33 ~~~~~~~~~~~l~lImf~mGl~Ls~~d~~~~~--~~p~~vligl~~qfvlmPlla~~~~~~~~l~~--~-l~~Gl~ll~~ 107 (319)
T COG0385 33 FGWLGSAIPIALALIMFGMGLTLSREDFLAGL--KHPRLVLIGLAAQFVLMPLLALLLAKLFPLPP--E-LAVGLLLLGC 107 (319)
T ss_pred chhhhHHHHHHHHHHHHhcCCCCCHHHHHHhh--cchHHHHHHHHHHHHHHHHHHHHHHHHcCCCH--H-HHHhHHheee
Confidence 34455455888999999999999999988766 443 22333344433345666665554221 1 1122233333
Q ss_pred HHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh-hC---C----hHHHHHHHHHHHHHHHHHHH
Q 046529 162 ALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILV-SN---P----SQYYEVLSTVGFILICVVVV 233 (799)
Q Consensus 162 ~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~-~~---~----~~~~~~~~~~~~~~~~~~v~ 233 (799)
.=+.|+.. +...+ .+.++ -++++.+.++.+++.++.-+...+ .+ + ..++.++..+..=++...+.
T Consensus 108 ~Pggv~S~-~~t~l-----AkGnV-alsV~~tsvStll~~f~tPllv~l~~~~~v~~~~~~m~~~i~~~vllP~~LG~~~ 180 (319)
T COG0385 108 CPGGVASN-AMTYL-----AKGNV-ALSVCSTSVSTLLGPFLTPLLVGLLAGGGVPVDVGGMFLSILLQVLLPFVLGQLL 180 (319)
T ss_pred CCCchhHH-HHHHH-----hcCcH-HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHHHHHHHHHH
Confidence 33333332 22222 23332 467777788888888776554443 22 1 23333333333333445566
Q ss_pred HHHHHHHHHHh
Q 046529 234 RPALSWVFCSA 244 (799)
Q Consensus 234 r~~~~~l~~~~ 244 (799)
|+......++.
T Consensus 181 r~~~~~~~~~~ 191 (319)
T COG0385 181 RPLLPKWVERL 191 (319)
T ss_pred HHHHHHHHHHH
Confidence 76665555553
No 62
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=96.43 E-value=0.076 Score=56.77 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCch-hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHH
Q 046529 262 GVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPIT-NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVL 340 (799)
Q Consensus 262 ~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~-~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii 340 (799)
...+.+.+++.++++.++|-.++|+++.... ++ -.-.+.++.+ ..+-+.++....|+++|++.+.+. +.....+.
T Consensus 3 ~a~~~~~l~~~l~lP~~v~~il~GillGp~~-lg~i~~~~~~~~l-~~igl~~llF~~Gl~~d~~~l~~~--~~~~~~~~ 78 (273)
T TIGR00932 3 AAVLAVPLSRRLGIPSVLGYLLAGVLIGPSG-LGLISNVEGVNHL-AEFGVILLMFLIGLELDLERLWKL--RKAAFGVG 78 (273)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhCccc-ccCCCChHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHH--HHHHHHHH
Confidence 3455678888999999999999999886321 11 0111235555 567778888899999999887653 33333333
Q ss_pred HHHHHHH-HHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHH
Q 046529 341 FGFGMSK-ILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPT 400 (799)
Q Consensus 341 ~~~~~~K-~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~l 400 (799)
...++.- ++.++..+++++.++.+++.+|..+++-. .-+++.+..|.+..+.+.-..+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ls~Ts--~~v~~~il~~~~~~~~~~g~l~ 137 (273)
T TIGR00932 79 VLQVLVPGVLLGLLLGHLLGLALGAAVVIGIILALSS--TAVVVQVLKERGLLKTPFGQTV 137 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhH--HHHHHHHHHHcCcccChHHHHH
Confidence 3333344 44455567788999999999999887654 2344455566676665544333
No 63
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=96.35 E-value=0.86 Score=50.99 Aligned_cols=308 Identities=14% Similarity=0.134 Sum_probs=162.3
Q ss_pred HHHHHHHHHHHHHHHHHHhccc-------CCChhhhhhee-------eccCCChHHHHHHHHHHHHHHHHHH----h--h
Q 046529 46 FLIQLAYVLFINHLLVAILKPL-------RQPPIVGQILE-------MFPYKSVMLLETYAYIALLFYLFLI----G--L 105 (799)
Q Consensus 46 ~l~qi~lil~~s~~~~~ll~rl-------~~P~ivg~Ila-------l~p~~~~~~l~~la~lGli~~lFl~----G--l 105 (799)
++.-++++.++..+++++=+|+ |-|.++..+.. ++|++..+..+.+-+-+=.+.+|.+ | +
T Consensus 30 m~g~~a~~~v~G~~l~~IG~riPi~k~yiGGg~il~~f~ps~Lv~~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSIL 109 (414)
T PF03390_consen 30 MIGGFAVMMVLGFLLGEIGDRIPILKDYIGGGAILCIFVPSALVYFGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSIL 109 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHhhChhhhccCChHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhh
Confidence 4455556667777777766653 44555554444 6665544444443322222233332 3 4
Q ss_pred ccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHH-----HhhccHHHHHHHHHhccc
Q 046529 106 DMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVA-----LTATNFQELTQILTDLRI 180 (799)
Q Consensus 106 e~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~-----ls~Ts~pvv~~iL~elkl 180 (799)
.||.+.+.|.. .|-+..-+.+.+..++++.+++.+++.++.. ..+.+++- ...-+.|...-.-+-++.
T Consensus 110 gm~RklLika~--~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~-----~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~ 182 (414)
T PF03390_consen 110 GMNRKLLIKAF--ARFIPPILGGVIGAFLLGGLVGMLFGYSFKD-----AIFYIVLPIMGGGMGAGAVPLSQIYAEALGQ 182 (414)
T ss_pred hcCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHhCCCHHH-----HHHHHHhhhcCCCccccHhHHHHHHHHHhCC
Confidence 89999999999 8888888888998988888888888763211 11111111 111222321111111232
Q ss_pred cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhC--C------------hH--H----------HHHHHHHHHHHHHHHHHH
Q 046529 181 LHLDIGRIALSSALLSDLFTWMLLLACILVSN--P------------SQ--Y----------YEVLSTVGFILICVVVVR 234 (799)
Q Consensus 181 ~~s~~g~lals~a~v~D~~~~ill~~~~~~~~--~------------~~--~----------~~~~~~~~~~~~~~~v~r 234 (799)
-..+.=..++.+.++..+++++.-++.--+.. + .. . ..-.....++.+.+|.+.
T Consensus 183 ~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G 262 (414)
T PF03390_consen 183 DAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLLKGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILG 262 (414)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEEeCCccccccccccCCCCCHHHHHHHHHHHHHHHHHH
Confidence 33333344555555555555555444433311 0 00 0 001111112222233333
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC---CCchhHHHHHHhhhhhhhhh
Q 046529 235 PALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKK---QPITNTFKDKLDDFLVSSGL 311 (799)
Q Consensus 235 ~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~---~~~~~~l~~kl~~~~~~l~l 311 (799)
.++ ...+++|+..-..++=.++.-. |+.-++=..+...|...-+.
T Consensus 263 ~ll--------------------------------~~~i~ih~~a~mIi~~~i~K~~~lvP~~~e~~a~~~~~f~~~~lt 310 (414)
T PF03390_consen 263 VLL--------------------------------SKLIGIHAYAWMIILVAIVKAFGLVPESLEEGAKQWYKFFSKNLT 310 (414)
T ss_pred HHH--------------------------------HHhcCCcHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHHHHHH
Confidence 222 2233333322222222222111 11112222344444455566
Q ss_pred hHHHHHhhhc-cccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHH-HHHHHHhhhh-hHHHHHHhhhcc
Q 046529 312 PGFFLLTGFR-SNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGL-ALGLLMNTKG-LLALIVLNTACN 388 (799)
Q Consensus 312 PlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~-~lgl~l~~kG-~v~l~~~~~~~~ 388 (799)
+...+-+|+. +|++.+....++. .+++++..+++-.+++++.+++.|+-+-|+. .-|+.|+.+| .-+++++..+..
T Consensus 311 ~~lLvgiGv~~~~l~~l~~a~t~~-~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAItaGLC~an~GGtGDvAVLsAa~R 389 (414)
T PF03390_consen 311 WPLLVGIGVAYTDLNDLIAAFTPQ-YVVIVLATVLGAVIGAFLVGKLVGFYPVESAITAGLCMANMGGTGDVAVLSAANR 389 (414)
T ss_pred HHHHHHHHhhhCcHHHHHHHhCHH-HHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHhhhcccCCCCCCcchheehhhh
Confidence 6667777887 9988776654454 4556666778889999999999998777765 5777887666 667777777766
Q ss_pred CCCCC
Q 046529 389 RKDLV 393 (799)
Q Consensus 389 ~~ii~ 393 (799)
.+++.
T Consensus 390 M~Lmp 394 (414)
T PF03390_consen 390 MELMP 394 (414)
T ss_pred ccccc
Confidence 66553
No 64
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.27 E-value=0.11 Score=62.08 Aligned_cols=133 Identities=11% Similarity=0.074 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCC-CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHH
Q 046529 256 ISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKK-QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWM 334 (799)
Q Consensus 256 ~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~-~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~ 334 (799)
..+.++...++..++..+|+++++|=.++|+++... -..-.. .+.++.+ ..+-+.++....|+++|+..+.....
T Consensus 10 ~~~~l~~a~~~~~l~~rl~~p~ilg~ilaGillGP~~lg~i~~-~~~i~~l-aelGvv~LLF~iGLel~~~~l~~~~~-- 85 (601)
T PRK03659 10 GVLFLFAAVVAVPLAQRLGIGAVLGYLLAGIAIGPWGLGFISD-VDEILHF-SELGVVFLMFIIGLELNPSKLWQLRR-- 85 (601)
T ss_pred HHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHhccccccCCCc-HHHHHHH-HHHHHHHHHHHHHhcCCHHHHHHHHH--
Confidence 445555566677888889999999999999998531 111111 1335555 57777888888999999987754211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCC
Q 046529 335 FVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVD 394 (799)
Q Consensus 335 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~ 394 (799)
.++.+....++.-++.....+.++|++|..++.+|..+..-.. .+ ...+..|.+.++.
T Consensus 86 ~~~~~g~~~v~~t~~~~~~~~~~~g~~~~~a~~~g~~la~SST-ai-v~~iL~e~~~~~t 143 (601)
T PRK03659 86 SIFGVGAAQVLLSAAVLAGLLMLTDFSWQAAVVGGIGLAMSST-AM-ALQLMREKGMNRS 143 (601)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH-HH-HHHHHHHcccccC
Confidence 1111111112222222223445678999999888875543322 11 2344445554443
No 65
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.26 E-value=0.12 Score=61.37 Aligned_cols=136 Identities=13% Similarity=0.122 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC-CchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHH
Q 046529 257 SFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQ-PITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMF 335 (799)
Q Consensus 257 ~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~-~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~ 335 (799)
..++..+++++.++..+|++.++|=.++|+++.... ..-+. .+.++.+ ..+-+-++....|+++|++.+.... ..
T Consensus 12 ~~~l~~a~~~~~l~~rl~~P~ivg~IlaGillGp~~lg~~~~-~~~~~~l-a~lGli~llF~~Gle~d~~~l~~~~--~~ 87 (558)
T PRK10669 12 VGGLVLAFILGMLANRLRISPLVGYLLAGVLAGPFTPGFVAD-TKLAPEL-AELGVILLMFGVGLHFSLKDLMAVK--SI 87 (558)
T ss_pred HHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhhCccccccccc-hHHHHHH-HHHHHHHHHHHhHhcCCHHHHHHHh--hH
Confidence 344566667788888899999999999999985321 11111 1334444 6777777888889999998775421 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchh
Q 046529 336 VLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFP 398 (799)
Q Consensus 336 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~ 398 (799)
.....+..++.=++.+++.+..+++++.+++.+|..++.-.. .+++....|.|.++.+.-.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~lg~~ls~tS~--~vv~~~L~e~~~l~s~~G~ 148 (558)
T PRK10669 88 AIPGAIAQIAVATLLGMALSAVLGWSLMTGIVFGLCLSTAST--VVLLRALEERQLIDSQRGQ 148 (558)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH--HHHHHHHHhcCcccCcchH
Confidence 111122222233344445567788999999999987777443 4556667777877775443
No 66
>COG2855 Predicted membrane protein [Function unknown]
Probab=96.06 E-value=0.061 Score=58.03 Aligned_cols=118 Identities=16% Similarity=0.071 Sum_probs=87.9
Q ss_pred HHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHH
Q 046529 267 GFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMS 346 (799)
Q Consensus 267 ~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~ 346 (799)
....+..|+++..=|.+.|+++..-.+...+...-++.. .-.++.+=.+..|++++++.+.+. .+ -.+.+.+..+..
T Consensus 29 ~~~~~~~~l~al~lAIllGi~l~~l~~~~~~~~~GI~fs-~k~LLr~gIvLlG~~ltl~~i~~~-G~-~~v~~~~~~l~~ 105 (334)
T COG2855 29 FFFSIHLGLSALTLAILLGILLGILPQIPAQTSAGITFS-SKKLLRLGIVLLGFRLTLSDIADV-GG-SGVLIIAITLSS 105 (334)
T ss_pred hHHhhhcCchHHHHHHHHHHHHhccccchhhhccchhhh-HHHHHHHHHHHHcceeeHHHHHHc-Cc-cHHHHHHHHHHH
Confidence 344455666788889999999986566666666666665 678889999999999999888653 12 244555555666
Q ss_pred HHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhc
Q 046529 347 KILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTAC 387 (799)
Q Consensus 347 K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~ 387 (799)
-++.++..++++|+|++.+..+|-.-+.=|.-.+...+-..
T Consensus 106 t~~~~~~lg~~lgld~~~a~Lia~GssICGasAiaA~~pvi 146 (334)
T COG2855 106 TFLFAYFLGKLLGLDKKLALLIAAGSSICGASAIAATAPVI 146 (334)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHccchhhHHHHHHHhCCcC
Confidence 77888888889999999999999988888876666555433
No 67
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=95.94 E-value=0.42 Score=52.24 Aligned_cols=79 Identities=18% Similarity=0.152 Sum_probs=50.5
Q ss_pred HHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcC-c--chhhhhhHHHHHHHHHhhccHHHHHHH
Q 046529 98 FYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGE-S--QEFITQGGYMFCAVALTATNFQELTQI 174 (799)
Q Consensus 98 ~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~-~--~~~~~~~~~l~l~~~ls~Ts~pvv~~i 174 (799)
.++|..|-++|++...+.. ||...+.+.=+++..+++.+++.++... . +.. .....+....++..+...+-..+
T Consensus 55 ~~~~~~ga~i~~~~~~~~l--~~g~~l~~~k~~~~~~~~~~~~~~~g~~~i~~gl~-~G~s~la~~a~l~~~N~~ly~~~ 131 (326)
T PRK05274 55 VFLFCMGASINLRATGTVL--KKGGTLLLTKFAVAALVGVIAGKFIGEEGIRLGGF-AGLSTLAIIAAMDNTNGGLYAAL 131 (326)
T ss_pred HHHHHcCCEEeccccchhh--hhchhHHHHHHHHHHHHHHHhhhcchHHHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHH
Confidence 6889999999999988877 8888887888888888888777776531 0 000 01233444445555554444444
Q ss_pred HHhcc
Q 046529 175 LTDLR 179 (799)
Q Consensus 175 L~elk 179 (799)
+.+++
T Consensus 132 ~~~~g 136 (326)
T PRK05274 132 MGQYG 136 (326)
T ss_pred HHHhC
Confidence 44444
No 68
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=95.94 E-value=0.18 Score=56.96 Aligned_cols=156 Identities=15% Similarity=0.109 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC-CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhH
Q 046529 255 HISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPK-KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPW 333 (799)
Q Consensus 255 ~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~ 333 (799)
.+..++..+.+.+.+.+.+|+++++|-.++|+++.. +...-.+-.+.++.+ .++=.-++....|+.+|+..+......
T Consensus 10 ~~~iiL~~a~i~~~l~~rl~lp~vlg~llaGiilGp~~~~~~~~~~~~i~~l-aelGvi~LlF~~GLE~~~~~l~~~~~~ 88 (397)
T COG0475 10 QLLILLLVAVILGPLFKRLGLPPVLGYLLAGIILGPWGLLLIIESSEIIELL-AELGVVFLLFLIGLEFDLERLKKVGRS 88 (397)
T ss_pred HHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHhcCcccccccCCchHHHHHH-HHHhHHHHHHHHHHCcCHHHHHHhchh
Confidence 455666677778899999999999999999999985 222222223333333 455566777889999999888653222
Q ss_pred HHHHHHHHHHHHHHHHHH--HHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 046529 334 MFVLVVLFGFGMSKILIT--FLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVI 411 (799)
Q Consensus 334 ~~~~~ii~~~~~~K~~~~--~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~ 411 (799)
. ......+.+..=++.+ +... +++.++.+++.+|..+..-.. -+++.+..|.|....+.-...+-..++.=...
T Consensus 89 ~-~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~al~lg~~l~~sS~--~i~~~iL~e~~~~~~~~g~~~l~~~i~~Di~~ 164 (397)
T COG0475 89 V-GLGVAQVGLTAPFLLGLLLLLG-ILGLSLIAALFLGAALALSST--AIVLKILMELGLLKTREGQLILGALVFDDIAA 164 (397)
T ss_pred h-hhhHHHHHHHHHHHHHHHHHHH-HhccChHHHHHHHHHHHHHHH--HHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence 1 2222223333332333 2223 589999999999987766443 23445556667676665555444444433333
Q ss_pred HHHH
Q 046529 412 EPIL 415 (799)
Q Consensus 412 ~plv 415 (799)
-|++
T Consensus 165 i~lL 168 (397)
T COG0475 165 ILLL 168 (397)
T ss_pred HHHH
Confidence 3333
No 69
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=95.75 E-value=2.2 Score=46.68 Aligned_cols=110 Identities=18% Similarity=0.124 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcCCCchh---hHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhh
Q 046529 89 ETYAYIALLFYLFLIGLDMDINLISATGMTNKV---VSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTA 165 (799)
Q Consensus 89 ~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~---~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~ 165 (799)
+.....++..++|..|+.++.+++++.. ++. ...-...+++.=++++++...+.... ...+..|.....
T Consensus 30 ~~~~~~~v~~iFf~~Gl~L~~~~l~~~~--~~~~~~l~~~~~~fvl~Pll~~~~~~l~~~~~------~~~l~~Gl~~~~ 101 (313)
T PF13593_consen 30 EYVIKYGVALIFFISGLSLPTEELKAAL--RNWRLHLFVQAFNFVLFPLLGFGLSRLFPAFL------PPELALGLLILA 101 (313)
T ss_pred hhhHHHHHHHHHHHHcCCCCHHHHHHHH--hcchHHHHHHHHHHHHHHHHHHHHHHHhhccC------CHHHHHHHHHHh
Confidence 4677788888889999999999998865 333 22222223322233555555443211 111233322222
Q ss_pred ccHH-HHHH-HHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 166 TNFQ-ELTQ-ILTDLRILHLDIGRIALSSALLSDLFTWMLLLACIL 209 (799)
Q Consensus 166 Ts~p-vv~~-iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~ 209 (799)
.-++ +-+. .++.. .+.+ -..++..+.++.+++.++.-+...
T Consensus 102 ~lPtTv~S~v~~T~~--AgGN-~a~Al~~~~~snllgv~ltP~ll~ 144 (313)
T PF13593_consen 102 CLPTTVSSSVVLTRL--AGGN-VALALFNAVLSNLLGVFLTPLLLL 144 (313)
T ss_pred hCCchhhHHHHHHHH--cCCC-HHHHHHHHHHHhhhhHhHHHHHHH
Confidence 1111 1111 12222 2222 246777788888888877644443
No 70
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=95.75 E-value=0.25 Score=53.60 Aligned_cols=130 Identities=17% Similarity=0.166 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHH----HhchhHHHHHHHHHhhcCC-CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchh
Q 046529 258 FVLAGVLLCGFITD----GCGAHSAIGAFTLGVIMPK-KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKP 332 (799)
Q Consensus 258 ~il~~~l~~~~~ae----~~G~~~ilGaf~aGl~lp~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~ 332 (799)
+.+++..+..++++ ..++++.+=|.+.|+++.| -....+.+..-++.- ...++.+=.+..|.++++..+.+. .
T Consensus 5 l~~~ia~~a~~l~~~~~~~~~l~~~~~AillG~~i~n~~~~~~~~~~~Gi~~~-~k~~Lr~gIVLlG~~l~~~~i~~~-G 82 (305)
T PF03601_consen 5 LCFAIAILAYFLASLPFFLPGLGALLIAILLGMLIGNLFFGLPARFKPGIKFS-SKKLLRLGIVLLGFRLSFSDILAL-G 82 (305)
T ss_pred HHHHHHHHHHHHHhCcccccCccHHHHHHHHHHHHhhhccCCcHHHHhHHHHH-HHHHHHHHHHHHCccccHHHHHHh-C
Confidence 34444445555555 3577888889999999996 445555665656554 568889999999999999887653 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccC
Q 046529 333 WMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNR 389 (799)
Q Consensus 333 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~ 389 (799)
+...+..++..++.=.++.++..|.+|++.+.+..+|...+.=|.-.++...-..+.
T Consensus 83 ~~~~~~~~~~v~~~~~~~~~lg~r~~~l~~~~~~Lia~GtsICG~SAi~A~a~~i~a 139 (305)
T PF03601_consen 83 WKGLLIIIIVVILTFLLTYWLGRRLFGLDRKLAILIAAGTSICGASAIAATAPVIKA 139 (305)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHhhcccchHHHHHHHcccccC
Confidence 322333333333333444444449999999999999999888887777666555444
No 71
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=95.58 E-value=4.3 Score=44.47 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHHHHHhch--hHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch-h
Q 046529 256 ISFVLAGVLLCGFITDGCGA--HSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK-P 332 (799)
Q Consensus 256 ~~~il~~~l~~~~~ae~~G~--~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~-~ 332 (799)
....+....+.+++.+.+++ ...+|+++.+.++.-.....-.+-+.+ ..+..-+.=..+|.+++...+.... .
T Consensus 157 l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l----~~~aqv~iG~~iG~~f~~~~l~~~~~~ 232 (318)
T PF05145_consen 157 LALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWL----VNAAQVLIGASIGSRFTRETLRELRRL 232 (318)
T ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHH----HHHHHHHHHHHHHccccHHHHHHHHHH
Confidence 45555667778888888887 568888888877763211111111111 2222233445778888876655432 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCC
Q 046529 333 WMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRK 390 (799)
Q Consensus 333 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ 390 (799)
+...++..++.+..-.+.+++.+++.++++.+++ +.+.|-|.-|+.+.....+.+
T Consensus 233 ~~~~l~~~~~~l~~~~~~a~~l~~~~~~~~~t~~---La~aPGGl~eM~l~A~~l~~d 287 (318)
T PF05145_consen 233 LPPALLSTLLLLALCALFAWLLSRLTGIDFLTAL---LATAPGGLAEMALIALALGAD 287 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHH---HHhCCccHHHHHHHHHHcCCC
Confidence 4445566666677788888889999999988765 345898988888877766544
No 72
>PRK05326 potassium/proton antiporter; Reviewed
Probab=95.51 E-value=0.15 Score=60.47 Aligned_cols=129 Identities=14% Similarity=0.069 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchh--HHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHH
Q 046529 257 SFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITN--TFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWM 334 (799)
Q Consensus 257 ~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~--~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~ 334 (799)
.+++++..+++.++..+|+..+++-.++|+++.....-.- .-.+-.+.+ ..+.++++....|+++|+..+.. .+.
T Consensus 12 ~~ll~l~~~~~~l~~r~~~P~ll~~il~GillGp~~lg~i~~~~~~~~~~i-~~l~L~~iLF~~Gl~~~~~~l~~--~~~ 88 (562)
T PRK05326 12 ALLLLLSILASRLSSRLGIPSLLLFLAIGMLAGEDGLGGIQFDNYPLAYLV-GNLALAVILFDGGLRTRWSSFRP--ALG 88 (562)
T ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHhCccccCCcccCcHHHHHHH-HHHHHHHHHHcCccCCCHHHHHH--HHH
Confidence 3444555566777788888888888888888864221100 111223444 68889999999999999998865 344
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCC
Q 046529 335 FVLVVLFGFGMSKILI-TFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRK 390 (799)
Q Consensus 335 ~~~~ii~~~~~~K~~~-~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ 390 (799)
....+....++.-.+. ++...++++++|.+++.+|..+++-.... +..+..+.+
T Consensus 89 ~~~~la~~gv~~t~~~~g~~~~~l~g~~~~~alllgai~s~Td~a~--v~~iL~~~~ 143 (562)
T PRK05326 89 PALSLATLGVLITAGLTGLFAHWLLGLDWLEGLLLGAIVGSTDAAA--VFSLLRGKG 143 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHhhhhccCchHH--HHHHHhccC
Confidence 4444433433333333 45566778999999999999887765432 223444444
No 73
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=95.41 E-value=4 Score=44.03 Aligned_cols=53 Identities=19% Similarity=0.249 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcCCCc--hhhHHHHH-H-HHHHHHHHHHHHHHHh
Q 046529 89 ETYAYIALLFYLFLIGLDMDINLISATGMTN--KVVSIALA-G-TLVPMAVGLGAFFLVI 144 (799)
Q Consensus 89 ~~la~lGli~~lFl~Gle~d~~~l~~~~~~~--~~~~ia~~-~-~lip~~~g~~~~~~l~ 144 (799)
..+.-..+.+.||..|+.++++++++.. + +....++. . ++.|++ +++++.+++
T Consensus 7 ~~~~~~~l~~~m~~~G~~l~~~~~~~~~--~~p~~~~~~~~~~~vi~Pll-a~~l~~~~~ 63 (286)
T TIGR00841 7 STILLILLFLIMFSMGCTLEFEDFKGHL--RKPWGVIIGLLAQYGIMPLT-GFLLAKVFK 63 (286)
T ss_pred HHHHHHHHHHHHHHccCCCcHHHHHHHH--hCchHHHHHHHHHHHHHHHH-HHHHHHHhC
Confidence 3333444888999999999999998866 5 34444444 2 345654 355555554
No 74
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=95.41 E-value=5.3 Score=43.82 Aligned_cols=295 Identities=16% Similarity=0.132 Sum_probs=144.4
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCCCh--hhh-hhee-----eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCC
Q 046529 46 FLIQLAYVLFINHLLVAILKPLRQPP--IVG-QILE-----MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGM 117 (799)
Q Consensus 46 ~l~qi~lil~~s~~~~~ll~rl~~P~--ivg-~Ila-----l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~ 117 (799)
...|.++.+.++...++++..+++|. ..| -+++ +.+.+ ...-..+-.+|.+.+=-.+|..+..+.+....
T Consensus 7 ~~~~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~~~~-l~~P~~l~~~~q~ilG~~ig~~~t~s~l~~l~- 84 (352)
T COG3180 7 IILQWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLRGLT-LPLPRGLFKAGQVILGIMIGASLTPSVLDTLK- 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccc-ccCChHHHHHHHHHHHHHHhhhcCHHHHHHHH-
Confidence 35677788888989999999999865 334 2222 22211 11114445555555666888988887765432
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHH
Q 046529 118 TNKVVSIALAGTLVPMAVGLGAFFLVIG-ESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLS 196 (799)
Q Consensus 118 ~~~~~~ia~~~~lip~~~g~~~~~~l~~-~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~ 196 (799)
+-+.+.+...+++...+...++++.. + .++ ...++ +|.+ +-.......+-+|.| .+....++.
T Consensus 85 --~~w~~~~~v~~~tl~~s~l~g~ll~r~~-~~~--~~Ta~-~gs~--PGgas~m~~iA~d~g---Ad~~~VAl~----- 148 (352)
T COG3180 85 --SNWPIVLVVLLLTLLSSILLGWLLKRFS-ILP--GNTAF-LGSS--PGGASAMVSIAQDYG---ADLRLVALM----- 148 (352)
T ss_pred --HcccHHHHHHHHHHHHHHHHHHHHHHhc-CCC--cchhh-HhcC--CchHHHHHHHHHHhC---CChhHHHHH-----
Confidence 33445555555666666666666554 2 122 11221 1111 111111222224444 221111110
Q ss_pred HHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-----CCCCchHHHHHHHHHHHHHHHHH
Q 046529 197 DLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALSWVFCSAIRGD-----NNLSDTHISFVLAGVLLCGFITD 271 (799)
Q Consensus 197 D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~~~~~~-----~~~~~~~~~~il~~~l~~~~~ae 271 (799)
. .... +.....+-++.+.... .++..++. .+.....+.+.+...++.+.+..
T Consensus 149 -----------Q------~lRv----l~Vvl~vplv~~~~~~--~~a~~~~~~~i~~~~~~~~~~~~l~~~~~~~g~l~~ 205 (352)
T COG3180 149 -----------Q------YLRV----LFVVLLAPLVSRLFVG--DGANGSGTPEIWLPPVDWLILLLLILAALLGGLLGK 205 (352)
T ss_pred -----------H------HHHH----HHHHHHHHHHHHHhcC--CCCCCCCCccccCchhhHHHHHHHHHHHHHHHHHHH
Confidence 0 0000 1111112222222111 01110000 01111124444445555666666
Q ss_pred Hhch--hHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHH
Q 046529 272 GCGA--HSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKI 348 (799)
Q Consensus 272 ~~G~--~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~ 348 (799)
.+++ ...+|+++.|..+.-.....-++-+-+ ..+-.-+.-..+|.++|-..+.... .....++.++..++.-.
T Consensus 206 ~lr~Pa~~ll~~l~l~a~v~~~~~~~~~lP~wl----~~va~~~iG~~IG~~f~~~~l~~~~r~~~~~~v~ii~l~~~~~ 281 (352)
T COG3180 206 LLRFPAPTLLGPLLLGAIVHFGGGITIQLPAWL----LAVAQALIGALIGSRFDRSILREAKRLLPAILVSIIALMAIAA 281 (352)
T ss_pred HHcCCcHHHHHHHHHHHHhhcccceeeeCCHHH----HHHHHHHHHHHHcccccHHHHHHhHhhcchHHHHHHHHHHHHH
Confidence 6665 347888888888775431111111111 1222233455778888865544322 22224455555566677
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhcc
Q 046529 349 LITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACN 388 (799)
Q Consensus 349 ~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~ 388 (799)
..+++.+++.+.++.++.. ..+|-|.-++.....+.+
T Consensus 282 ~~a~ll~~~~~i~~~ta~L---a~sPGGl~~ma~~A~~l~ 318 (352)
T COG3180 282 GMAGLLSWLTGIDLNTAYL---ATSPGGLDTMAAIAAALG 318 (352)
T ss_pred HHHHHHHHhcCCCHHHHHH---HcCCCcHHHHHHHHHHcC
Confidence 7778888899999887653 347888877777666654
No 75
>COG0589 UspA Universal stress protein UspA and related nucleotide-binding proteins [Signal transduction mechanisms]
Probab=95.36 E-value=0.15 Score=48.32 Aligned_cols=137 Identities=19% Similarity=0.227 Sum_probs=81.1
Q ss_pred eEEEecc-CCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCC-ccc-----cccchhhcHHHHHHHhhhhc
Q 046529 621 HLLMLFL-GGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHN-SEV-----ARCTEKQADDEDIYEFKFKT 693 (799)
Q Consensus 621 ~I~v~f~-GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~-~~~-----~~~~e~~~d~~~l~~~~~~~ 693 (799)
+|++.+. |.+..+.|++.|..++...+..++++.+.+..... ..... ... ......+..++.+++.+...
T Consensus 7 ~il~~~d~~s~~~~~a~~~a~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (154)
T COG0589 7 KILVAVDVGSEAAEKALEEAVALAKRLGAPLILLVVIDPLEPT---ALVSVALADAPIPLSEEELEEEAEELLAEAKALA 83 (154)
T ss_pred eEEEEeCCCCHHHHHHHHHHHHHHHhcCCeEEEEEEecccccc---cccccccccchhhhhHHHHHHHHHHHHHHHHHHH
Confidence 8999999 99999999999999999999999988887543321 00000 000 00111233345555555433
Q ss_pred CCCCCeEEEEEEecCh---HHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCccee
Q 046529 694 MNDESISYIENVVNNG---EEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHAS 770 (799)
Q Consensus 694 ~~~~~v~y~E~~v~~~---~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~S 770 (799)
...+ +...+..+..| .+.+....+ ..+.||+++|.++. .++. + =-||-.-+.++.. ++++
T Consensus 84 ~~~~-~~~~~~~~~~g~~~~~~i~~~a~-~~~adliV~G~~g~------~~l~-----~-~llGsvs~~v~~~---~~~p 146 (154)
T COG0589 84 EAAG-VPVVETEVVEGSPSAEEILELAE-EEDADLIVVGSRGR------SGLS-----R-LLLGSVAEKVLRH---APCP 146 (154)
T ss_pred HHcC-CCeeEEEEecCCCcHHHHHHHHH-HhCCCEEEECCCCC------cccc-----c-eeeehhHHHHHhc---CCCC
Confidence 2222 22122223223 233332222 34799999999753 1222 2 4578888888874 7889
Q ss_pred EEEEeee
Q 046529 771 VLVIQQY 777 (799)
Q Consensus 771 vLVvqq~ 777 (799)
|||+...
T Consensus 147 Vlvv~~~ 153 (154)
T COG0589 147 VLVVRSE 153 (154)
T ss_pred EEEEccC
Confidence 9998753
No 76
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=94.46 E-value=0.58 Score=56.49 Aligned_cols=71 Identities=13% Similarity=0.076 Sum_probs=53.3
Q ss_pred hhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh--hCCChHHHHHHHHHHhhhhhH
Q 046529 306 LVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLL--HKIPPKEGLALGLLMNTKGLL 378 (799)
Q Consensus 306 ~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~--~~~~~~e~~~lgl~l~~kG~v 378 (799)
+..+.+++-....|++++...+.. .|..+..+++.++..-++++.+.+++ .+++|..++.+|.++++-.-+
T Consensus 74 IteIvL~I~LFa~Gl~L~~~~Lrr--~wrsV~rLl~~~M~lT~livAL~a~~Li~GL~~~~ALLLGAILAPTDPV 146 (810)
T TIGR00844 74 ISRILLCLQVFAVSVELPRKYMLK--HWVSVTMLLVPVMTSGWLVIALFVWILVPGLNFPASLLMGACITATDPV 146 (810)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHhhhcCCcHH
Confidence 367788888889999999998876 45555555555555556666666654 499999999999999987754
No 77
>PRK10490 sensor protein KdpD; Provisional
Probab=94.41 E-value=0.35 Score=60.62 Aligned_cols=124 Identities=15% Similarity=0.116 Sum_probs=83.8
Q ss_pred CccceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 439 KAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 439 ~~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
....||||||....+.+.+++-+..++...+.+ .+++|+.....+. . .....+++.+.
T Consensus 248 ~~~eriLV~v~~~~~~~~lIr~~~rlA~~~~a~--~~~l~V~~~~~~~--~------------------~~~~~~~l~~~ 305 (895)
T PRK10490 248 HTRDAILLCIGHNTGSEKLVRTAARLAARLGSV--WHAVYVETPRLHR--L------------------PEKKRRAILSA 305 (895)
T ss_pred CcCCeEEEEECCCcchHHHHHHHHHHHHhcCCC--EEEEEEecCCcCc--C------------------CHHHHHHHHHH
Confidence 456899999999999999999999888776554 5999975321110 0 12334566666
Q ss_pred HHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCC-CceEE
Q 046529 519 FENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTP-CSVCI 597 (799)
Q Consensus 519 f~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~Ap-CsVgI 597 (799)
++ .++.. +..+... +..++.+.|.+.|++++++.|+||=.++.+. + .-+++.+++++.+| -+|=|
T Consensus 306 ~~-lA~~l--Ga~~~~~----~~~dva~~i~~~A~~~~vt~IViG~s~~~~~---~----~~~s~~~~l~r~~~~idi~i 371 (895)
T PRK10490 306 LR-LAQEL--GAETATL----SDPAEEKAVLRYAREHNLGKIIIGRRASRRW---W----RRESFADRLARLGPDLDLVI 371 (895)
T ss_pred HH-HHHHc--CCEEEEE----eCCCHHHHHHHHHHHhCCCEEEECCCCCCCC---c----cCCCHHHHHHHhCCCCCEEE
Confidence 65 55442 2233322 2368999999999999999999997665332 1 02356889999997 45554
Q ss_pred E
Q 046529 598 F 598 (799)
Q Consensus 598 l 598 (799)
+
T Consensus 372 v 372 (895)
T PRK10490 372 V 372 (895)
T ss_pred E
Confidence 4
No 78
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.35 E-value=1.9 Score=47.36 Aligned_cols=119 Identities=13% Similarity=0.110 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHhhcCCCCCchhHHHHHHhhh---hhhhhhhHHHHHhhhc-cccccccCchhHHHHHHHHHHHHHHHHH
Q 046529 274 GAHSAIGAFTLGVIMPKKQPITNTFKDKLDDF---LVSSGLPGFFLLTGFR-SNLVVFSSHKPWMFVLVVLFGFGMSKIL 349 (799)
Q Consensus 274 G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~---~~~l~lPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~ 349 (799)
++|+..-..++|.++..-.=..+++.++...+ ...-+.+..++-+|+. +|++.+.+..+| -.+++++..+++=.+
T Consensus 203 ~Ih~~v~mII~~vi~k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~-~~vviiv~~Vlg~ii 281 (347)
T TIGR00783 203 GIPAYAFMILIAAALKAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSW-QFVVICLSVVVAMIL 281 (347)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhch-hHhhhHHHHHHHHHH
Confidence 57888888888888876555556666665543 2333344444455765 788776653233 356666777788899
Q ss_pred HHHHHHHhhCCChHHHH-HHHHHHhhhh-hHHHHHHhhhccCCCCC
Q 046529 350 ITFLVSLLHKIPPKEGL-ALGLLMNTKG-LLALIVLNTACNRKDLV 393 (799)
Q Consensus 350 ~~~l~~~~~~~~~~e~~-~lgl~l~~kG-~v~l~~~~~~~~~~ii~ 393 (799)
++++.+|+.|+-+-|+. .-|+.|+.+| .-+++++..+...+++.
T Consensus 282 ~s~lvGKllG~YPiE~aItagLC~~~~GGtGDvavLsAa~RM~Lmp 327 (347)
T TIGR00783 282 GGAFLGKLMGMYPVESAITAGLCNSGMGGTGDVAVLSASNRMNLIP 327 (347)
T ss_pred HHHHHHHHhCCChHHHHHHHhhhccCCCCCCceeeeehhhhccccc
Confidence 99999999998666665 4677887776 56777777666666553
No 79
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=94.34 E-value=0.66 Score=57.46 Aligned_cols=38 Identities=5% Similarity=-0.003 Sum_probs=25.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHh--hCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMA--AHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma--~~~~v~ltvvr~~~~ 658 (799)
||++.+-+-.|-+..+.++.... +.+...+.++|+++-
T Consensus 460 riL~cv~~~~~v~~li~Lle~s~~t~~sp~~vy~lhLveL 499 (832)
T PLN03159 460 RMLVCVHTPRNVPTIINLLEASHPTKRSPICIYVLHLVEL 499 (832)
T ss_pred eEEEEeccCCcHHHHHHHHHhcCCCCCCCceEEEEEEEee
Confidence 99998775444566666655542 345588999999863
No 80
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=94.02 E-value=1.5 Score=48.14 Aligned_cols=126 Identities=18% Similarity=0.064 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHH-----hchhHHHHHHHHHhhcCCCC--CchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchh
Q 046529 260 LAGVLLCGFITDG-----CGAHSAIGAFTLGVIMPKKQ--PITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKP 332 (799)
Q Consensus 260 l~~~l~~~~~ae~-----~G~~~ilGaf~aGl~lp~~~--~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~ 332 (799)
+.+.+.+.++++. .|+++.+=|.+.|+++.+-. +.......-++ |....++-+=.+..|+++++..+... .
T Consensus 11 ~~ia~~a~~l~~~~~~~~~~l~~~~~AillG~~l~n~~~~~~~~~~~~Gi~-f~~k~lLr~gIVLlG~~l~~~~i~~~-G 88 (335)
T TIGR00698 11 ALILLLAGAAGSIINLADPALSALFLAILLGMVAGNTIYPQRDEEKKRGVL-FAKPFLLRIGITLYGFRLTFPYIADV-G 88 (335)
T ss_pred HHHHHHHHHHHhhhhhccCCCcHHHHHHHHHHHHhccccccchhhccchHH-HHHHHHHHHHHHHHCccccHHHHHHh-h
Confidence 3344444455443 46778888889999988622 22233333333 33566777788899999999887643 2
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhcc
Q 046529 333 WMFVLVVLFGFGMSKILI-TFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACN 388 (799)
Q Consensus 333 ~~~~~~ii~~~~~~K~~~-~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~ 388 (799)
+. .+.+.++.+..-+.. .++..|.+|++++.+..+|...+.=|.-.++...-..+
T Consensus 89 ~~-~l~~~~~~v~~~~~~~~~~g~k~l~l~~~~~~Lia~GtsICGaSAi~A~a~~i~ 144 (335)
T TIGR00698 89 PN-EIVADTLILTSTFFLTVFLGSSRLKLDKQMSILLGAGSSICGAAAVAAIEPVIK 144 (335)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHcchhHHHHHHHHHhccccC
Confidence 22 333333333344444 45555899999999999999888888776666554443
No 81
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=93.01 E-value=5.5 Score=39.97 Aligned_cols=106 Identities=20% Similarity=0.259 Sum_probs=49.8
Q ss_pred HHHHHHHHHHhhccChHHHHhcCCCchhhHH--HH-HHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHH
Q 046529 94 IALLFYLFLIGLDMDINLISATGMTNKVVSI--AL-AGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQE 170 (799)
Q Consensus 94 lGli~~lFl~Gle~d~~~l~~~~~~~~~~~i--a~-~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pv 170 (799)
+.+.+.||..|+++|++++++.. |+...+ ++ ..+++.=++++++++.+.... .. ....+.+ .+.++.+ .
T Consensus 2 i~l~~~mf~~gl~~~~~~l~~~~--~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~-~~--~~~Gl~l-~~~~P~~--~ 73 (187)
T PF01758_consen 2 ILLFLMMFSMGLSLTFEDLRRVL--RRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLS-PA--LALGLLL-VAACPGG--P 73 (187)
T ss_dssp -HHHHHHHHHHHC--GGGGHHHH--HSHHHHHHHHHHHHHHHHHHHHHHH-HHTT---HH--HHHHHHH-HHHS-B---T
T ss_pred hhhhHHHHHhhhcccHHHHHHHH--hChHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-HH--HHHHHHH-HhcCCcH--H
Confidence 45778999999999999999877 664433 22 223333334555552332211 11 1122222 1222222 1
Q ss_pred HHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046529 171 LTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILV 210 (799)
Q Consensus 171 v~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~ 210 (799)
.+...+.+ .+.+. .++++...++.+.+.++.-+...+
T Consensus 74 ~s~~~t~l--~~Gd~-~ls~~lt~istll~~~~~P~~~~l 110 (187)
T PF01758_consen 74 ASNVFTYL--AGGDV-ALSVSLTLISTLLAPFLMPLLLYL 110 (187)
T ss_dssp HHHHHHHH--TT--H-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHH--hCCCc-ccccceeeHHHHHHHHHHHHHHHH
Confidence 23333333 23332 366666777777777766554443
No 82
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=92.81 E-value=0.75 Score=54.05 Aligned_cols=117 Identities=11% Similarity=0.179 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhH--HHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHH
Q 046529 259 VLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNT--FKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFV 336 (799)
Q Consensus 259 il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~--l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~ 336 (799)
.++.+.+...+++.+++...++-+++|+++.. .+.... +.. +.+ ..+++|......|+++|...+.. .+..+
T Consensus 6 l~~~~~~~~~l~~r~~lP~~v~lil~Gi~lg~-~~~~~~~~~~~--~~~-~~~~Lp~lLF~~g~~~~~~~l~~--~~~~i 79 (525)
T TIGR00831 6 LVMLATAVAVTVKFIRLPYPIALILAGLLLGL-AGLLPEVPLDR--EIV-LFLFLPPLLFEAAMNTDLRELRE--NFRPI 79 (525)
T ss_pred HHHHHHHHHHHhcccCCCHHHHHHHHHHHHHh-ccccCCCCCCH--HHH-HHHHHHHHHHHHHhcCCHHHHHH--HHHHH
Confidence 33444455566677777777777777777652 111110 111 122 45788999999999999998865 34333
Q ss_pred HHHHHHHHHH-HHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHH
Q 046529 337 LVVLFGFGMS-KILITFLVSLLHKIPPKEGLALGLLMNTKGLLALI 381 (799)
Q Consensus 337 ~~ii~~~~~~-K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~ 381 (799)
..+.+.+++. -.+.++...++.++||..++.+|.++++-..+...
T Consensus 80 ~~la~~~vlit~~~v~~~~~~~~~l~~~~alllGails~TDpvav~ 125 (525)
T TIGR00831 80 ALIAFLLVVVTTVVVGFSLNWILGIPLALALILGAVLSPTDAVAVL 125 (525)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHhCCCCHHHHH
Confidence 3333333333 33334444446799999999999999988866543
No 83
>TIGR00930 2a30 K-Cl cotransporter.
Probab=91.88 E-value=45 Score=42.26 Aligned_cols=104 Identities=8% Similarity=0.139 Sum_probs=65.7
Q ss_pred cceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHH
Q 046529 441 EFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFE 520 (799)
Q Consensus 441 e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 520 (799)
.-++|+.+.+|++-+.+++++..+.+.+. -..+.|+++-+.+.. . .+.++..+..+
T Consensus 575 rPqiLvl~~~p~~~~~Ll~f~~~l~~~~g---l~i~~~v~~~~~~~~-~--------------------~~~~~~~~~~~ 630 (953)
T TIGR00930 575 RPQCLVLTGPPVCRPALLDFASQFTKGKG---LMICGSVIQGPRLEC-V--------------------KEAQAAEAKIQ 630 (953)
T ss_pred CCeEEEEeCCCcCcHHHHHHHHHhccCCc---EEEEEEEecCchhhh-H--------------------HHHHHHHHHHH
Confidence 46899999999999999999999984432 345668876432211 0 11111112222
Q ss_pred HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHh-----cCccEEEEccCCCcccCC
Q 046529 521 NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAED-----KRVAFIIIPYIRPLTTND 572 (799)
Q Consensus 521 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e-----~~a~lIIlp~h~~~~~dg 572 (799)
.+-+. .+ ++.|..+-.-.++.+++..+.+- .+.+.++|||...|+.+.
T Consensus 631 ~~~~~--~~--~~~f~~~~~~~~~~~g~~~l~q~~GlG~l~PNtv~lg~~~~w~~~~ 683 (953)
T TIGR00930 631 TWLEK--NK--VKAFYAVVVADDLREGVRHLIQASGLGRMKPNTLVMGYKKDWRQAE 683 (953)
T ss_pred HHHHH--hC--CCeEEEEecCCCHHHHHHHHHHhcCCCCCCCCEEEecCccchhhcc
Confidence 22222 22 23333333335999999999887 459999999999887554
No 84
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=91.71 E-value=2 Score=43.36 Aligned_cols=107 Identities=24% Similarity=0.338 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHhhccChH-----HHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHH
Q 046529 89 ETYAYIALLFYLFLIGLDMDIN-----LISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVAL 163 (799)
Q Consensus 89 ~~la~lGli~~lFl~Gle~d~~-----~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~l 163 (799)
+...+..+.+++|.+|+++--+ .+++.+ ++++.+.+..++.+++.+.+++.++..+ ...++.++.-+
T Consensus 23 ~~~~~~~L~lLLF~VGi~lG~~~~~l~~l~~~g--~~~Llipl~tIlGSllgg~l~~~ll~~~------~~~~lav~sG~ 94 (191)
T PF03956_consen 23 DKISTYALYLLLFLVGIDLGSNREILRQLRSLG--KRALLIPLATILGSLLGGLLASLLLGLS------LKESLAVASGF 94 (191)
T ss_pred ccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHhcCC------HHHHHHHHccC
Confidence 6788889999999999988543 577788 9999999999999999888888888432 23444444333
Q ss_pred hhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHH
Q 046529 164 TATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLAC 207 (799)
Q Consensus 164 s~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~ 207 (799)
.= +.....+++|+ .+.+.|.++.-+=++-+++++++.-++
T Consensus 95 Gw--YSlsg~~i~~~--~~~~~G~iafl~n~~RE~~a~~~~P~~ 134 (191)
T PF03956_consen 95 GW--YSLSGVLITQL--YGPELGTIAFLSNLFREILAIILIPLL 134 (191)
T ss_pred cH--HHhHHHHHHhh--hCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 11122233333 355777777666666666665554433
No 85
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=90.52 E-value=2.2 Score=51.27 Aligned_cols=121 Identities=17% Similarity=0.147 Sum_probs=80.7
Q ss_pred CccceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 439 KAEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 439 ~~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
....|||||+........+++-+..++..-..|. +++|+..-..+.. ...+.+++-..
T Consensus 246 ~~~e~ilvcI~~~~~~e~liR~a~RlA~~~~a~~--~av~v~~~~~~~~--------------------~~~~~~~l~~~ 303 (890)
T COG2205 246 AARERILVCISGSPGSEKLIRRAARLASRLHAKW--TAVYVETPELHRL--------------------SEKEARRLHEN 303 (890)
T ss_pred cccceEEEEECCCCchHHHHHHHHHHHHHhCCCe--EEEEEeccccccc--------------------cHHHHHHHHHH
Confidence 4568999999999999999998888887666654 8888863221111 02344566666
Q ss_pred HHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCC
Q 046529 519 FENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPC 593 (799)
Q Consensus 519 f~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApC 593 (799)
++--++. ++. ..+..+ .++.+.|.+.|++.++.-|++|=+++.+....+ .+++.+++++.+|-
T Consensus 304 ~~Lae~l-Gae----~~~l~~--~dv~~~i~~ya~~~~~TkiViG~~~~~rw~~~~-----~~~l~~~L~~~~~~ 366 (890)
T COG2205 304 LRLAEEL-GAE----IVTLYG--GDVAKAIARYAREHNATKIVIGRSRRSRWRRLF-----KGSLADRLAREAPG 366 (890)
T ss_pred HHHHHHh-CCe----EEEEeC--CcHHHHHHHHHHHcCCeeEEeCCCcchHHHHHh-----cccHHHHHHhcCCC
Confidence 6554544 222 222333 599999999999999999999977654322111 24567888888763
No 86
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=90.22 E-value=37 Score=38.40 Aligned_cols=93 Identities=12% Similarity=0.062 Sum_probs=56.9
Q ss_pred hhHHHHHHHHHhhcCCCCCc--hhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHH-HHHHHH
Q 046529 275 AHSAIGAFTLGVIMPKKQPI--TNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGM-SKILIT 351 (799)
Q Consensus 275 ~~~ilGaf~aGl~lp~~~~~--~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~-~K~~~~ 351 (799)
+....+|++.|+++.+-.+. ..++.++.-....++.+-+|.+..=+.+++..+.+. +...+++++..++ .=+...
T Consensus 245 lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~~--a~Plliil~~q~i~~~l~~~ 322 (398)
T TIGR00210 245 LPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELADL--AGPIALILLVQVMFMALYAI 322 (398)
T ss_pred CCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 56788999999999862211 111223333334667777788888888999888753 3334444444333 334555
Q ss_pred HHHHHhhCCChHHHHHHHH
Q 046529 352 FLVSLLHKIPPKEGLALGL 370 (799)
Q Consensus 352 ~l~~~~~~~~~~e~~~lgl 370 (799)
++.-|.+|-+ .|+..++.
T Consensus 323 fv~fr~mg~~-ydaaV~~a 340 (398)
T TIGR00210 323 FVTFRLMGKD-YDAAVLCA 340 (398)
T ss_pred HHhHHhccch-HHHHHHhc
Confidence 6777778766 77776433
No 87
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=90.17 E-value=2.6 Score=46.04 Aligned_cols=115 Identities=13% Similarity=0.145 Sum_probs=75.0
Q ss_pred hhhhhhhhhHHHHHhhhccccccccCchhHHHHHHH-HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHH
Q 046529 304 DFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVV-LFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIV 382 (799)
Q Consensus 304 ~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~i-i~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~ 382 (799)
.+.++++=|+.|.-+|..+|++-+...+ + ..++ -..+=+| +..+++.+..+|++.+|+..+|.+=..-|-.++.+
T Consensus 101 gi~~gl~P~LIFlGIGAMtDFgpllanP-~--~~ll~gaaAQ~G-iF~t~~~A~~lGF~~~eAAsIgIIGgADGPTaIf~ 176 (399)
T TIGR03136 101 TFSNSLVACILFFGIGAMSDISFILARP-W--ASITVALFAEMG-TFATLVIGYYCGLTPGEAAAVGTIGGADGPMVLFA 176 (399)
T ss_pred HHhcccHHHHHHHhccHHhcchHHHhCh-H--HHHHHHHHHHhh-HHHHHHHHHHcCCCHHHhhHHhhcccCCccHHHHH
Confidence 4467889999999999999998776532 1 1112 1222222 23345566778999999999999888888888877
Q ss_pred HhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 383 LNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 383 ~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
.+..-. .++.+-......-|+++ =.+-||++|.+-.+++|
T Consensus 177 s~kLAp-~Llg~IaVAAYsYMaLV-PiiqPpimklLttkkER 216 (399)
T TIGR03136 177 SLILAK-DLFVPISIIAYLYLSLT-YAGYPYLIKLLVPKKYR 216 (399)
T ss_pred HHhhhh-HhHHHHHHHHHHHHHHH-hcccchHHHhhcCHHHH
Confidence 764332 23333333333344555 67789999987654444
No 88
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=89.83 E-value=35 Score=37.59 Aligned_cols=51 Identities=8% Similarity=-0.042 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH-HHHhc
Q 046529 89 ETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAF-FLVIG 145 (799)
Q Consensus 89 ~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~-~~l~~ 145 (799)
+.+-++|+++ .|.++++.++.+.+ .+.+.+....+..++.++..++ ..++.
T Consensus 65 k~lLr~gIVL----lG~~l~~~~i~~~G--~~~l~~~~~~v~~~~~~~~~~g~k~l~l 116 (335)
T TIGR00698 65 PFLLRIGITL----YGFRLTFPYIADVG--PNEIVADTLILTSTFFLTVFLGSSRLKL 116 (335)
T ss_pred HHHHHHHHHH----HCccccHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3566777764 59999999999999 8888887777777777777666 45653
No 89
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=88.98 E-value=5.6 Score=38.77 Aligned_cols=121 Identities=18% Similarity=0.200 Sum_probs=75.4
Q ss_pred HHHHHHHHHHHHHhchh--HHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch-hHHHH
Q 046529 260 LAGVLLCGFITDGCGAH--SAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFV 336 (799)
Q Consensus 260 l~~~l~~~~~ae~~G~~--~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~ 336 (799)
+....+.+++.+.+|+. ..+|+++++.++.-.....-++-+.+ ..+-.-+.=..+|.+++...+.... .+...
T Consensus 4 ~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~----~~~~qviiG~~iG~~f~~~~l~~~~~~~~~~ 79 (156)
T TIGR03082 4 LLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWL----LALAQVVIGILIGSRFTREVLAELKRLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHH----HHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence 34455566666777764 68888888777663221111111111 2223334456788888876665433 34445
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhc
Q 046529 337 LVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTAC 387 (799)
Q Consensus 337 ~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~ 387 (799)
+..++..+..-++.+++..+..++++.+++ +| ..|-|.-|+.....-.
T Consensus 80 l~~~~~~l~~~~~~~~~l~~~~~~~~~ta~-La--~~PGGl~~m~~~A~~~ 127 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLARLTGVDPLTAF-LA--TSPGGASEMAALAAEL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCHHHHH-HH--hCCchHHHHHHHHHHh
Confidence 666666677788888899999999998875 33 4788887777766544
No 90
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=88.51 E-value=43 Score=36.84 Aligned_cols=46 Identities=15% Similarity=0.093 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhh-hHHHHHHh
Q 046529 339 VLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKG-LLALIVLN 384 (799)
Q Consensus 339 ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG-~v~l~~~~ 384 (799)
.+++..+.-+..++..++.+|.+.+|+..+.+--+.|- ...+.++.
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g~qN~~lai~lA~ 297 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGASNNFELAIAVAI 297 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhhhhhHHHHHHHHH
Confidence 33444555667777888999999999988777666554 44444444
No 91
>COG0025 NhaP NhaP-type Na+/H+ and K+/H+ antiporters [Inorganic ion transport and metabolism]
Probab=87.52 E-value=3 Score=47.64 Aligned_cols=124 Identities=16% Similarity=0.157 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCC-C-CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHH
Q 046529 257 SFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPK-K-QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWM 334 (799)
Q Consensus 257 ~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~-~-~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~ 334 (799)
.+++.+..+++.+++.+..+.+.-+.+.|++..- . .+......-.-|.+ ..+++|.-....|+++|...+.+. |.
T Consensus 12 ~lil~l~~~~~~~~~~l~~~~i~~~ll~g~i~g~~~l~~~~~~~~~~~el~-~~l~l~ilLf~~g~~l~~~~l~~~--~~ 88 (429)
T COG0025 12 LLILLLGLLVSVLAGRLLLPEIPLLLLLGLLGGPPGLNLISPDLELDPELF-LVLFLAILLFAGGLELDLRELRRV--WR 88 (429)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhccccccccCChHHH-HHHHHHHHHHHhHhcCCHHHHHHh--HH
Confidence 3344444455555555555444444444444331 0 11111112222233 277888888889999999988763 55
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh--CCChHHHHHHHHHHhhhhhHHHHHH
Q 046529 335 FVLVVLFGFGMSKILITFLVSLLH--KIPPKEGLALGLLMNTKGLLALIVL 383 (799)
Q Consensus 335 ~~~~ii~~~~~~K~~~~~l~~~~~--~~~~~e~~~lgl~l~~kG~v~l~~~ 383 (799)
.+..+.....+...++.....++. ++|+..++.+|.++++-.-+.+.-.
T Consensus 89 ~I~~La~~~v~it~~~~g~~~~~l~~~i~~~~a~l~gAilspTDPv~v~~i 139 (429)
T COG0025 89 SILVLALPLVLITALGIGLLAHWLLPGIPLAAAFLLGAILSPTDPVAVSPI 139 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHhHHhcCCCchhhHHH
Confidence 555555555566666666666666 8999999999999988776655543
No 92
>PF03977 OAD_beta: Na+-transporting oxaloacetate decarboxylase beta subunit; InterPro: IPR005661 Members of this family are integral membrane proteins. The decarboxylation reactions they catalyse are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis [].; GO: 0016829 lyase activity, 0006814 sodium ion transport
Probab=87.45 E-value=1.9 Score=46.55 Aligned_cols=114 Identities=18% Similarity=0.200 Sum_probs=74.9
Q ss_pred hhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 046529 305 FLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLN 384 (799)
Q Consensus 305 ~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~ 384 (799)
+-++++=|+.|.-+|..+|++-+...+ + ..++-..+=+ -+..+++.+...|++.+|+..+|.+=..-|-.++.+.+
T Consensus 66 i~~~l~P~LIF~GIGAmtDFgpllanP-~--~~llGaaAQ~-Gif~t~~~A~~lGf~~~eAAsIgIIGgADGPtsIf~s~ 141 (360)
T PF03977_consen 66 ISNGLFPPLIFMGIGAMTDFGPLLANP-K--TLLLGAAAQF-GIFATFLGAILLGFTPKEAASIGIIGGADGPTSIFVSS 141 (360)
T ss_pred hhcchhhHHHHHHHhHHHhhHHHHhCH-H--HHHHHHHHHH-hHHHHHHHHHHhCCCHHHhhHhhhcccCCCcHHHHHHH
Confidence 347888899999999999998776532 2 1222222222 23456667778899999999999988888888887776
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 385 TACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 385 ~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
..-. .++.+-......-|+++ -.+-||++|.+-.+++|
T Consensus 142 ~LAp-~LlgpIaVaAYsYMaLv-PiiqPpimklLttkkeR 179 (360)
T PF03977_consen 142 KLAP-HLLGPIAVAAYSYMALV-PIIQPPIMKLLTTKKER 179 (360)
T ss_pred hhhH-HHHHHHHHHHHHHHHHH-hhhhhHHHHHhcCHHHH
Confidence 4421 22333233333344455 67789999987654444
No 93
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=85.92 E-value=4.9 Score=44.96 Aligned_cols=116 Identities=16% Similarity=0.082 Sum_probs=64.9
Q ss_pred hhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhh-HHHHHHh
Q 046529 307 VSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGL-LALIVLN 384 (799)
Q Consensus 307 ~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~-v~l~~~~ 384 (799)
.++|+-.||..+|+..++..+.+.. .......+.....+...+.....+.+++.+..-++..|-.--.-|+ .+.++..
T Consensus 66 ~~~lm~~fF~~igL~~~~~~lkkgg~~~~~~~~~~~~~~~~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~GGhGTAaa~g~ 145 (368)
T PF03616_consen 66 QDFLMIIFFTTIGLGASLKLLKKGGKAVLIFLLIAIILAFLQNIVGLGLAKLLGLDPLFGLLAGSIGFTGGHGTAAAFGP 145 (368)
T ss_pred HHHHHHHHHHHHhhccchhhHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchHHHHhccccccCCccHHHHHHH
Confidence 4567788999999999988776543 1222223333344566666777778888887766654421112232 2333344
Q ss_pred hhccC-CCCCCCchhH--HHHHHHHHHHHHHHHHHHhhhhh
Q 046529 385 TACNR-KDLVDEAFPP--TIFALFVMTCVIEPILAATYKAT 422 (799)
Q Consensus 385 ~~~~~-~ii~~~~f~~--lv~~~lv~t~i~~plv~~ly~~~ 422 (799)
...+. |.-+.....+ -.+..+.-..+-.|+.+++.|+.
T Consensus 146 ~fe~~~G~~~a~~vg~a~AT~Glv~G~liGgpi~~~lirk~ 186 (368)
T PF03616_consen 146 TFEELYGWEGATSVGMAAATFGLVVGGLIGGPIANWLIRKG 186 (368)
T ss_pred HHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 44454 5544333222 22333333456678888877643
No 94
>TIGR00808 malonate_madM malonate transporter, MadM subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM.The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=85.48 E-value=4 Score=40.85 Aligned_cols=95 Identities=15% Similarity=0.207 Sum_probs=63.9
Q ss_pred HHHHHHHHHHHHHHHhcccCCCh--------hhhhhee-e-----ccCCChHHHHHHHHHHHH-------HHHHHHhhcc
Q 046529 49 QLAYVLFINHLLVAILKPLRQPP--------IVGQILE-M-----FPYKSVMLLETYAYIALL-------FYLFLIGLDM 107 (799)
Q Consensus 49 qi~lil~~s~~~~~ll~rl~~P~--------ivg~Ila-l-----~p~~~~~~l~~la~lGli-------~~lFl~Gle~ 107 (799)
.+.++=++.++.+++.||+-.-+ ++|.+++ + ...+....+..++-+|++ |-.-....|.
T Consensus 17 aFa~vG~~m~~s~~lS~~lT~Gr~hgSAIAI~lGL~lAy~gG~~TgG~kGlaDi~lfsGiglmGGaMlRDfAIvaTAf~v 96 (254)
T TIGR00808 17 AFAVVGLMMYVSHLLSKYLTKGKLHGSAIAITMGLVLAYVGGVYTGGEKGLADIAIFGGFGLMGGAMLRDLAIVATAFEV 96 (254)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHcccccCCccccchhhhhcchhhhhhHHHHHHHHHHHhhcC
Confidence 33444444556666777764433 3444444 1 234555556666655543 2334567899
Q ss_pred ChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 108 DINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 108 d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
|++++||.+ ..-..--+.+.++||++|..+++.+++
T Consensus 97 ~~~e~kkaG--~~G~vsL~~G~v~~F~~Ga~vA~afGY 132 (254)
T TIGR00808 97 DVKEVKKAG--KVGMVALLLGCVIPFVIGAMVAWAFGY 132 (254)
T ss_pred cHHHHHHcc--hHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999 777777788999999999999999987
No 95
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=85.10 E-value=64 Score=35.32 Aligned_cols=147 Identities=11% Similarity=0.158 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHH--HHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhh
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIAL--AGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTA 165 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~--~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~ 165 (799)
++.--.+|+++.|+=.=+++|.+++++....+|.+.+++ -=++.|+.. +++++++..+.+. .....+.+|++=+
T Consensus 49 ~sipiai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm-~~la~~fl~~~pe--y~~GlILlglApC- 124 (342)
T COG0798 49 VSIPIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLM-FALAWFFLPDEPE--YRAGLILLGLAPC- 124 (342)
T ss_pred eehhHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHH-HHHHHHHhCCCHH--HHHHHHHHHhhhh-
Confidence 344456777778887778999999998772122222222 123344433 3444444432111 1123333333322
Q ss_pred ccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh-hC--C--hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 166 TNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILV-SN--P--SQYYEVLSTVGFILICVVVVRPALSWV 240 (799)
Q Consensus 166 Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~-~~--~--~~~~~~~~~~~~~~~~~~v~r~~~~~l 240 (799)
+|-..+-. ++.+.+. ..++..-.+||++.+++++..... .+ . -.++.++..+...+.+-++...+.+++
T Consensus 125 ~aMVivw~-----~La~Gd~-~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~~v~~~~i~~Sv~lyl~iPli~G~lTR~i 198 (342)
T COG0798 125 IAMVIVWS-----GLAKGDR-ELTLVLVAFNSLLQIVLYAPLGKFFLGVISISVPFWTIAKSVLLYLGIPLIAGVLTRYI 198 (342)
T ss_pred HHHHHHHH-----hhccCcH-hhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23222333 3333332 355666678999998888654433 11 1 344555554444444445555555555
Q ss_pred HHHh
Q 046529 241 FCSA 244 (799)
Q Consensus 241 ~~~~ 244 (799)
..|.
T Consensus 199 ~~k~ 202 (342)
T COG0798 199 LIKK 202 (342)
T ss_pred HHHh
Confidence 5553
No 96
>PRK03818 putative transporter; Validated
Probab=85.01 E-value=18 Score=42.83 Aligned_cols=83 Identities=14% Similarity=0.084 Sum_probs=55.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhccChHHH---HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHH
Q 046529 85 VMLLETYAYIALLFYLFLIGLDMDINLI---SATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAV 161 (799)
Q Consensus 85 ~~~l~~la~lGli~~lFl~Gle~d~~~l---~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~ 161 (799)
......+.++|+.+|+|.+|++.-+..+ |+.+ .+...+++.-.+++.++++++.++++.+ + ....=..
T Consensus 56 ~~~~~~~~~~gl~lFv~~vGl~~Gp~f~~~l~~~G--~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~G~~ 126 (552)
T PRK03818 56 SDMLHFIQEFGLILFVYTIGIQVGPGFFSSLRKSG--LRLNLFAVLIVILGGLVTAILHKLFGIP--L-----PVMLGIF 126 (552)
T ss_pred hHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHhCCC--H-----HHHHHHh
Confidence 4567779999999999999999998765 5555 5666777777777777777776555432 1 1111223
Q ss_pred HHhhccHHHHHHHHH
Q 046529 162 ALTATNFQELTQILT 176 (799)
Q Consensus 162 ~ls~Ts~pvv~~iL~ 176 (799)
+=+.|+.|.+....+
T Consensus 127 aGa~T~tp~l~aa~~ 141 (552)
T PRK03818 127 SGAVTNTPALGAGQQ 141 (552)
T ss_pred hccccccHHHHHHHH
Confidence 334566666655544
No 97
>PRK10490 sensor protein KdpD; Provisional
Probab=84.89 E-value=3 Score=52.39 Aligned_cols=120 Identities=14% Similarity=0.110 Sum_probs=74.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
||+|...|+|..+-.++.|.|||+.-++.++++++.+++... ... +..+++. +.+ ++.++... .
T Consensus 252 riLV~v~~~~~~~~lIr~~~rlA~~~~a~~~~l~V~~~~~~~--~~~--------~~~~~l~-~~~-~lA~~lGa--~-- 315 (895)
T PRK10490 252 AILLCIGHNTGSEKLVRTAARLAARLGSVWHAVYVETPRLHR--LPE--------KKRRAIL-SAL-RLAQELGA--E-- 315 (895)
T ss_pred eEEEEECCCcchHHHHHHHHHHHHhcCCCEEEEEEecCCcCc--CCH--------HHHHHHH-HHH-HHHHHcCC--E--
Confidence 899999999999999999999999999999999998653220 011 1112222 222 24443221 1
Q ss_pred EEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 701 YIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 701 y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
+.. + .|.|+.++|-+. ..+-+.+|+|++++. .| + --|-+-|-|.... ...-|.||=
T Consensus 316 ~~~--~-~~~dva~~i~~~A~~~~vt~IViG~s~~~-----------~~--~-~~~s~~~~l~r~~--~~idi~iv~ 373 (895)
T PRK10490 316 TAT--L-SDPAEEKAVLRYAREHNLGKIIIGRRASR-----------RW--W-RRESFADRLARLG--PDLDLVIVA 373 (895)
T ss_pred EEE--E-eCCCHHHHHHHHHHHhCCCEEEECCCCCC-----------CC--c-cCCCHHHHHHHhC--CCCCEEEEe
Confidence 222 2 233444444433 456899999999762 45 2 1356777777543 445677773
No 98
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=84.52 E-value=40 Score=33.31 Aligned_cols=84 Identities=17% Similarity=0.180 Sum_probs=59.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccChHH---HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc-CcchhhhhhHHHHH
Q 046529 84 SVMLLETYAYIALLFYLFLIGLDMDINL---ISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG-ESQEFITQGGYMFC 159 (799)
Q Consensus 84 ~~~~l~~la~lGli~~lFl~Gle~d~~~---l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~-~~~~~~~~~~~l~l 159 (799)
.....+.+.++|+.+|++.+|++--++. +++.+ .+...+++.-.++|.++++.+++++.+ + .....
T Consensus 48 ~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G--~~~~~~~~~i~~~~~~~~~~~~~~~~~l~--------~~~~~ 117 (169)
T PF06826_consen 48 PISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGG--LKLLLLGVIITLVPLLIALVIGRYLFKLN--------PGIAA 117 (169)
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHHHHHHHHHcCCC--------HHHHH
Confidence 4456778999999999999999988764 46667 777788888888888888888885443 2 12222
Q ss_pred H-HHHhhccHHHHHHHHHh
Q 046529 160 A-VALTATNFQELTQILTD 177 (799)
Q Consensus 160 ~-~~ls~Ts~pvv~~iL~e 177 (799)
| .+=+.|++|.+....+.
T Consensus 118 G~~aGa~T~tp~L~~A~~~ 136 (169)
T PF06826_consen 118 GILAGALTSTPALAAAQEA 136 (169)
T ss_pred HHHHccccCcHHHHHHHHh
Confidence 2 33345666766666544
No 99
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=83.95 E-value=16 Score=39.97 Aligned_cols=127 Identities=15% Similarity=0.162 Sum_probs=75.9
Q ss_pred ccCCChhhhhhee----e----ccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHH-HHHHHHH
Q 046529 66 PLRQPPIVGQILE----M----FPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGT-LVPMAVG 136 (799)
Q Consensus 66 rl~~P~ivg~Ila----l----~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~-lip~~~g 136 (799)
-++.|.+++.+++ + .|..-.+.++.+++...-+-||..|+.++.+.+++.. +..+...+.-. +.|++.
T Consensus 179 ~~~nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~lg~~~~plaLl~lG~~l~~~~~~~~~--~~~~~~~~~klil~P~i~- 255 (321)
T TIGR00946 179 LIKFPPLWAPLLSVILSLVGFKMPGLILKSISILSGATTPMALFSLGLALSPRKIKLGV--RDAILALIVRFLVQPAVM- 255 (321)
T ss_pred HHhCCChHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHHhhChhhhccCh--HHHHHHHHHHHHHHHHHH-
Confidence 3588999998888 1 2444578899999999999999999999988887776 66665555544 455543
Q ss_pred HHHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHH
Q 046529 137 LGAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLL 205 (799)
Q Consensus 137 ~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~ 205 (799)
++++..+..+. ...-..+.++....++.+.++.+.--.+. +.+-+...++-+++++.+.
T Consensus 256 ~~~~~~~~l~~-------~~~~~~vl~aa~P~a~~~~i~A~~y~~~~---~~aa~~v~~sT~ls~~tlp 314 (321)
T TIGR00946 256 AGISKLIGLRG-------LELSVAILQAALPGGAVAAVLATEYEVDV---ELASTAVTLSTVLSLISLP 314 (321)
T ss_pred HHHHHHhCCCh-------HHHHHHHHHHcCChhhHHHHHHHHhCCCH---HHHHHHHHHHHHHHHHHHH
Confidence 44444443321 22233344444444445555544321232 3444444444444444443
No 100
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=83.49 E-value=0.41 Score=53.62 Aligned_cols=112 Identities=16% Similarity=0.286 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCch--hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHH
Q 046529 261 AGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPIT--NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLV 338 (799)
Q Consensus 261 ~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~--~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ 338 (799)
+..++...+.+.++++.++|-.++|+++... .+. +.-.+.++.+ ..+.+++.....|+++|...+... +.....
T Consensus 6 ~~~~~~~~l~~r~~iP~~i~~i~~Gi~lg~~-~~~~~~~~~~~~~~l-~~i~l~~llF~~G~~~d~~~l~~~--~~~~~~ 81 (380)
T PF00999_consen 6 LLAFVAGILFRRLGIPSIIGYILVGIVLGPS-GLGLLEPDNPSFELL-AEIGLAFLLFEAGLELDIKELRRN--WRRALA 81 (380)
T ss_dssp -------------------------------------------S-SS-HHHHS--SSHHHHTTGGGG-------------
T ss_pred ehHHHHHHHHHHhCCCHHHHHHHheeehhhh-hhhhccchhhHHHHH-HHHHHHHHHHHHHHhhcccccccc--cccccc
Confidence 3344455578888999999999999998853 222 1113445555 788888888899999999988763 444444
Q ss_pred HHHHHHHHHHHH-HHHHHH---hhCCChHHHHHHHHHHhhhh
Q 046529 339 VLFGFGMSKILI-TFLVSL---LHKIPPKEGLALGLLMNTKG 376 (799)
Q Consensus 339 ii~~~~~~K~~~-~~l~~~---~~~~~~~e~~~lgl~l~~kG 376 (799)
+.+..++.-++. ++.... ..++++.+++.+|..+++-.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~l~~~~~~ts 123 (380)
T PF00999_consen 82 LGLVGFLLPFILVGFLLSFFLFILGLSWAEALLLGAILSATS 123 (380)
T ss_dssp --------------------------------TTHHHHTT--
T ss_pred cccceeeehhhHHHHHHHHhhccchhhhHHHhhhHHhhhccc
Confidence 444444444444 444443 47889999999998876554
No 101
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=83.31 E-value=74 Score=34.65 Aligned_cols=51 Identities=16% Similarity=0.116 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHH-HHHhc
Q 046529 89 ETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAF-FLVIG 145 (799)
Q Consensus 89 ~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~-~~l~~ 145 (799)
+.+-++|.+ +.|.++++..+.+.+ .+.+.+....+...+.+++.++ ..++.
T Consensus 59 k~~Lr~gIV----LlG~~l~~~~i~~~G--~~~~~~~~~~v~~~~~~~~~lg~r~~~l 110 (305)
T PF03601_consen 59 KKLLRLGIV----LLGFRLSFSDILALG--WKGLLIIIIVVILTFLLTYWLGRRLFGL 110 (305)
T ss_pred HHHHHHHHH----HHCccccHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 366677766 459999999999999 8888888888888888888777 66654
No 102
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=83.11 E-value=38 Score=35.23 Aligned_cols=110 Identities=15% Similarity=0.145 Sum_probs=69.7
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhh
Q 046529 296 NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTK 375 (799)
Q Consensus 296 ~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~k 375 (799)
+-+..-+.+-+-.+-+|+|= +...+.. .|..+++-++++.+.-++.+++.++++|.+.. +-..|.+|
T Consensus 65 ~~l~~lLgPAtVALAvPLY~-------q~~~lk~--~~~~Il~~~~vG~~~~i~s~~~la~~lgl~~~----~~~Sl~pK 131 (232)
T PRK04288 65 DIISFFLEPATIAFAIPLYK-------KRDVLKK--YWWQILGGIVVGSVCSVLIIYLVAKLIQLDNA----VMASMLPQ 131 (232)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH----HHHHHhhH
Confidence 34444455555566666652 2334443 46666666777777888888899999998753 33446899
Q ss_pred hhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046529 376 GLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAAT 418 (799)
Q Consensus 376 G~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~l 418 (799)
....-+...+..+.|-+..-+-...+++-++-..+.++++|++
T Consensus 132 SVTtPIAm~is~~iGG~psLtA~~ViitGi~Gai~g~~llk~~ 174 (232)
T PRK04288 132 AATTAIALPVSAGIGGIKEITSFAVIFNAVIIYALGAKFLKLF 174 (232)
T ss_pred hhhHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 9988888888888776554444444444444344455555654
No 103
>TIGR03082 Gneg_AbrB_dup membrane protein AbrB duplication. The model describes a hydrophobic sequence region that is duplicated to form the AbrB protein of Escherichia coli (not to be confused with a Bacillus subtilis protein with the same gene symbol). In some species, notably the Cyanobacteria and Thermus thermophilus, proteins consist of a single copy rather than two copies. The member from Pseudomonas putida, PP_1415, was suggested to be an ammonia monooxygenase characteristic of heterotrophic nitrifiers, based on an experimental indication of such activity in the organism and a glimmer of local sequence similarity between parts of P. putida protein and an instance of the AmoA protein from Nitrosomonas europaea (PubMed:9732537); we do not believe the sequence similarity to be meaningful. The member from E. coli (b0715, ybgN) appears to be the largely uncharacterized AbrB (aidB regulator) protein of E. coli cited in Volkert, et al. (PubMed 8002588), although we did not manage to tra
Probab=82.49 E-value=5.4 Score=38.89 Aligned_cols=90 Identities=17% Similarity=0.165 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHhcccCCC--hhhhhhee-----eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHH
Q 046529 53 VLFINHLLVAILKPLRQP--PIVGQILE-----MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIA 125 (799)
Q Consensus 53 il~~s~~~~~ll~rl~~P--~ivg~Ila-----l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia 125 (799)
.+.++.+.+++++++|+| .++|-+++ +........-..+.+++.+++=-.+|.+++.+.+++.. +.+..+
T Consensus 3 ~~~~~~~~g~l~~~l~~Pa~~llG~mi~~~~~~~~~~~~~~~P~~~~~~~qviiG~~iG~~f~~~~l~~~~---~~~~~~ 79 (156)
T TIGR03082 3 LLLVGLAGGLLASLLGLPAAWLLGPLLAGAVLSLAGGLEITLPPWLLALAQVVIGILIGSRFTREVLAELK---RLWPAA 79 (156)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhcCCccCCCCHHHHHHHHHHHHHHHHccCCHHHHHHHH---HHHHHH
Confidence 455677888999999998 45555554 22212223344566677777778999999999988755 444445
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 046529 126 LAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 126 ~~~~lip~~~g~~~~~~l~~ 145 (799)
+...+...+++.+.++++..
T Consensus 80 l~~~~~~l~~~~~~~~~l~~ 99 (156)
T TIGR03082 80 LLSTVLLLALSALLAWLLAR 99 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666655
No 104
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=82.29 E-value=65 Score=33.28 Aligned_cols=111 Identities=14% Similarity=0.102 Sum_probs=78.0
Q ss_pred hhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhh
Q 046529 295 TNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNT 374 (799)
Q Consensus 295 ~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~ 374 (799)
++.+..-+++-+-.+-+|+|= ++..+.. .|..+..-++++.+.-++.+++.++++|.+.. +.. .+.|
T Consensus 61 ~~~i~~lLgPAtVAlAvPLYk-------q~~~ik~--~w~~I~~g~~vGs~~ai~s~~llak~~g~~~~--~~~--Sl~P 127 (230)
T COG1346 61 GQWINFLLGPATVALAVPLYK-------QRHLIKR--HWKPILAGVLVGSVVAIISGVLLAKLFGLSPE--LIL--SLLP 127 (230)
T ss_pred cHHHHHHHHHHHHHHhhHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHH--HHH--Hhcc
Confidence 455556666666667777763 3344444 57777777888888889999999999998744 333 3689
Q ss_pred hhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046529 375 KGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAAT 418 (799)
Q Consensus 375 kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~l 418 (799)
|....-+...+..+.|-+.+-+-..+++.-++.+.+.++++|.+
T Consensus 128 kSvTTpiAm~vs~~iGGip~ltav~Vi~tGi~Gavlg~~llk~~ 171 (230)
T COG1346 128 KSVTTPIAMEVSESIGGIPALTAVFVILTGILGAVLGPLLLKLL 171 (230)
T ss_pred cccccHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999988888776665555666666555556666664
No 105
>COG2985 Predicted permease [General function prediction only]
Probab=81.72 E-value=6.9 Score=44.40 Aligned_cols=83 Identities=16% Similarity=0.203 Sum_probs=47.2
Q ss_pred HHHHHHHHHHHhhccChHH---HHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHH
Q 046529 93 YIALLFYLFLIGLDMDINL---ISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQ 169 (799)
Q Consensus 93 ~lGli~~lFl~Gle~d~~~---l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~p 169 (799)
++|+++|.+.+|+|--+.. +++.+ ++-..+++.-++ .+..+++++++-++++.......+-|+.-+..+..
T Consensus 62 ~lGL~LFVy~iGl~aGP~FFss~~~~G--l~~~~~allivi----~~~~~a~~l~k~~~~~~~~~~Gm~sGAlTsTP~L~ 135 (544)
T COG2985 62 ELGLILFVYTIGLEAGPGFFSSFRKSG--LNLNAFALLIVI----AALLLAWVLHKLFGIDLGLIAGMFSGALTSTPGLG 135 (544)
T ss_pred hhhhhHhhhhhhheecccHhHHHHHhh--hHHHHHHHHHHH----HHHHHHHHHHhhcCCCHHHhhhhhcccccCCchhH
Confidence 9999999999999998875 57777 777666665433 33344444443111220011233333333333344
Q ss_pred HHHHHHHhcccc
Q 046529 170 ELTQILTDLRIL 181 (799)
Q Consensus 170 vv~~iL~elkl~ 181 (799)
....+|+|++..
T Consensus 136 aa~~~L~~lg~~ 147 (544)
T COG2985 136 AAQDILRELGAP 147 (544)
T ss_pred HHHHHHHhhccc
Confidence 455667777643
No 106
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.52 E-value=9.7 Score=41.48 Aligned_cols=59 Identities=24% Similarity=0.291 Sum_probs=49.2
Q ss_pred eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHH
Q 046529 79 MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGA 139 (799)
Q Consensus 79 l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~ 139 (799)
..|....+.+..++.+-++.=|...|++.|++.++|.+ .|.+..++...+.-.+.++++
T Consensus 271 ~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~~~G--~kpl~la~~~~~~l~~~~l~l 329 (334)
T COG2855 271 LIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALKKAG--GKPLLLALLLWVFLVVGGLAL 329 (334)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHHHcC--ccHHHHHHHHHHHHHHHHHHH
Confidence 55777788899999999999999999999999999999 999988887766555444443
No 107
>COG3329 Predicted permease [General function prediction only]
Probab=79.42 E-value=28 Score=37.24 Aligned_cols=145 Identities=18% Similarity=0.204 Sum_probs=85.7
Q ss_pred HHHHHHHhc--hhHHHHHHHHHhhcCCC---CCchhHHHHHHhhhhhhhhhhHHHHHhhh----ccccccccCchhHHHH
Q 046529 266 CGFITDGCG--AHSAIGAFTLGVIMPKK---QPITNTFKDKLDDFLVSSGLPGFFLLTGF----RSNLVVFSSHKPWMFV 336 (799)
Q Consensus 266 ~~~~ae~~G--~~~ilGaf~aGl~lp~~---~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl----~idl~~l~~~~~~~~~ 336 (799)
+-++.+..| ++|.+.-|+.|++++-- -.+.+.+-+-+.. ....-+|. .+.-+.+.. .+..+
T Consensus 5 s~fl~~f~~nL~sP~llFf~~Gmlia~~ksdl~iP~~i~~~lsl--------yLL~aIG~kGGveir~snl~a--~v~~~ 74 (372)
T COG3329 5 SEFLMDFVGNLLSPTLLFFILGMLIAAFKSDLEIPEAIYQALSL--------YLLLAIGFKGGVEIRNSNLTA--MVLPV 74 (372)
T ss_pred HHHHHHHHhhhccchHHHHHHHHHHHHHhccccCchHHHHHHHH--------HHHHHHhcccceeeecCCcch--hHHHH
Confidence 344555555 47788888888877631 1122222222211 11223344 343333332 34455
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHH-HHHHHHHH
Q 046529 337 LVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVM-TCVIEPIL 415 (799)
Q Consensus 337 ~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~-t~i~~plv 415 (799)
+.-+.+.++.-++..++..++.+++..|+...+-.-..-..+..+.+...++..-+..+.|...++...=+ .+++.-++
T Consensus 75 ~~~~aL~~li~~ia~f~l~kl~~vdtvdaaA~ag~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l 154 (372)
T COG3329 75 ALGVALGFLIVFIAYFLLRKLPKVDTVDAAATAGTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVL 154 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccchHHHHHHHhhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHH
Confidence 66667777888888899999999999999998887787788888877777766556666665543332211 23444444
Q ss_pred HHhhh
Q 046529 416 AATYK 420 (799)
Q Consensus 416 ~~ly~ 420 (799)
..+|-
T Consensus 155 ~~~y~ 159 (372)
T COG3329 155 ANIYL 159 (372)
T ss_pred HHHHH
Confidence 44443
No 108
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=79.40 E-value=10 Score=42.45 Aligned_cols=135 Identities=16% Similarity=0.179 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhc-cccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 278 AIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFR-SNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSL 356 (799)
Q Consensus 278 ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~-idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~ 356 (799)
++...++|.+..+..-+.++-.+.+..++..+++|.+....=.+ .+...+. .++.+.+..++..+.=++.+++..+
T Consensus 9 i~~ii~~G~~~~~~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (385)
T PF03547_consen 9 IFLIILLGYLLGRFGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLL---SLWFIPVFAFIIFILGLLLGFLLSR 85 (385)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445566666655556677788899999999999986554444 3344333 2334444444444445666677777
Q ss_pred hhCCChHHHHH--HHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhh
Q 046529 357 LHKIPPKEGLA--LGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYK 420 (799)
Q Consensus 357 ~~~~~~~e~~~--lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~ 420 (799)
+++.+.++... ++...+.-|.+.+-+....+.. +.....++..++...+.-++...+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~N~~~lglpi~~~l~g~-----~~~~~~~~~~~~~~i~~~~~~~~l~~ 146 (385)
T PF03547_consen 86 LFRLPKEWRGVFVLAASFGNTGFLGLPILQALFGE-----RGVAYAIIFDVVNNIILWSLGYFLLE 146 (385)
T ss_pred hcCCCcccceEEEecccCCcchhhHHHHHHHHhcc-----hhhhhehHHHHhhHHHHHHHHHHhhc
Confidence 77777666543 3333445555556555544433 22233333344444444455444444
No 109
>PRK15475 oxaloacetate decarboxylase subunit beta; Provisional
Probab=79.25 E-value=3 Score=45.51 Aligned_cols=119 Identities=13% Similarity=0.088 Sum_probs=70.1
Q ss_pred hhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHhhhhhHHHH
Q 046529 304 DFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSL--LHKIPPKEGLALGLLMNTKGLLALI 381 (799)
Q Consensus 304 ~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~e~~~lgl~l~~kG~v~l~ 381 (799)
.+.++++=|+.|.-+|..+|++-+...+...+.....=.+++.-++++..... +.|++.+|+..+|.+=..-|-.++.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15475 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34578888999999999999987765431111111111222222222222111 1379999999999988888888887
Q ss_pred HHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 382 VLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 382 ~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
+.+..-. .++.+-......-|+++ -.+-||+.|.+-.+++|
T Consensus 210 vsskLAP-~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15475 210 LSGKLAP-ELLGAIAVAAYSYMALV-PLIQPPIMKALTTETER 250 (433)
T ss_pred hHhhhhh-HhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 7664321 23333333333344555 67789999987654433
No 110
>KOG2310 consensus DNA repair exonuclease MRE11 [Replication, recombination and repair]
Probab=79.12 E-value=2.5 Score=48.14 Aligned_cols=83 Identities=13% Similarity=0.241 Sum_probs=55.6
Q ss_pred hHHHHHHHHhcCccEEEEc---cCCCcccCCccccccccHHHHHhhhccCCCceEEEEcCCCC-C---Cccccccccccc
Q 046529 545 HEDICCLAEDKRVAFIIIP---YIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDRGLG-S---DEDKESQLKDHH 617 (799)
Q Consensus 545 ~~dI~~~A~e~~a~lIIlp---~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvdRg~~-~---~~~~~~~~~~~~ 617 (799)
.++||.+|+++++|+|++| ||.+..+...+-. .++.+-+.-+-.-||..=++-|.+.. + ...+ --.....
T Consensus 41 FeEIl~iA~e~~VDmiLlGGDLFHeNkPSr~~L~~--~i~lLRryClgdkP~~le~lSD~s~~f~~~~f~~V-NY~DpNl 117 (646)
T KOG2310|consen 41 FEEILEIAQENDVDMILLGGDLFHENKPSRKTLHR--CLELLRRYCLGDKPVQLEILSDQSVNFGNSVFGNV-NYEDPNL 117 (646)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCCccHHHHHH--HHHHHHHHccCCCceeeEEecccceecccccccee-cccCCCc
Confidence 5889999999999999999 8876544332211 35566667788889999999888642 1 1111 1111234
Q ss_pred ccceEEEeccC--CcchH
Q 046529 618 GIQHLLMLFLG--GPDDR 633 (799)
Q Consensus 618 ~~~~I~v~f~G--G~ddr 633 (799)
+|.+|.++ |.||.
T Consensus 118 ---NIsIPVFsIHGNHDD 132 (646)
T KOG2310|consen 118 ---NISIPVFSIHGNHDD 132 (646)
T ss_pred ---ceeeeeEEeecCCCC
Confidence 78888876 66553
No 111
>PRK15476 oxaloacetate decarboxylase subunit beta; Provisional
Probab=79.06 E-value=3 Score=45.46 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=70.0
Q ss_pred hhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHhhhhhHHHH
Q 046529 304 DFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSL--LHKIPPKEGLALGLLMNTKGLLALI 381 (799)
Q Consensus 304 ~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~e~~~lgl~l~~kG~v~l~ 381 (799)
.+.++++=|+.|.-+|..+|++-+...+...+.....=.+++.-++++..... +.|++.+|+..+|.+=..-|-.++.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15476 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34568888999999999999987765431111111111222222222222111 1379999999999988888888877
Q ss_pred HHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 382 VLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 382 ~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
+.+..-. .++.+-......-|+++ -.+-||+.|.+-.+++|
T Consensus 210 vsskLAP-~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15476 210 LSGKLAP-ELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred hHhhhhh-HhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 7664321 23333333333344555 67789999987654333
No 112
>PRK15477 oxaloacetate decarboxylase subunit beta; Provisional
Probab=79.05 E-value=3 Score=45.46 Aligned_cols=119 Identities=12% Similarity=0.081 Sum_probs=69.9
Q ss_pred hhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHH--hhCCChHHHHHHHHHHhhhhhHHHH
Q 046529 304 DFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSL--LHKIPPKEGLALGLLMNTKGLLALI 381 (799)
Q Consensus 304 ~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~--~~~~~~~e~~~lgl~l~~kG~v~l~ 381 (799)
.+.++++=|+.|.-+|..+|++-+...+...+.....=.+++.-++++..... +.|++.+|+..+|.+=..-|-.++.
T Consensus 130 gi~~gi~P~LIF~GIGAMtDFgpLlanP~~~llGaAAQ~GIF~t~~~A~~l~~~g~~GF~~~eAAsIgIIGGADGPTsIf 209 (433)
T PRK15477 130 AIGSGVAPLVIFMGVGAMTDFGPLLANPRTLLLGAAAQFGIFATVLGALTLNYFGLISFTLPQAAAIGIIGGADGPTAIY 209 (433)
T ss_pred HHhcchHHHHHHHhccHHhcchHHhhCHHHHHHHHHHHhhHHHHHHHHHHHhhcccCCCChhhchheeeeccCCCchHHH
Confidence 34568888999999999999987765431111111111222222222222111 1379999999999988888888877
Q ss_pred HHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 382 VLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 382 ~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
+.+..-. .++.+-......-|+++ -.+-||+.|.+-.+++|
T Consensus 210 vsskLAP-~Llg~IaVAAYSYMaLV-PiIQPpimklLTTkkER 250 (433)
T PRK15477 210 LSGKLAP-ELLGAIAVAAYSYMALV-PLIQPPIMKALTTEKER 250 (433)
T ss_pred hHhhhhh-HhHHHHHHHHHHHHHHH-hcccchHHHhccCHHHh
Confidence 7664321 23333333333344555 67789999987654333
No 113
>COG0786 GltS Na+/glutamate symporter [Amino acid transport and metabolism]
Probab=78.72 E-value=7.2 Score=43.23 Aligned_cols=116 Identities=16% Similarity=0.107 Sum_probs=66.7
Q ss_pred hhhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhh-HHHHHH
Q 046529 306 LVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGL-LALIVL 383 (799)
Q Consensus 306 ~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~-v~l~~~ 383 (799)
..+.|+-+||+.+|+.-++..+.... ...+............-......+.+.+++..-++..|-+--.-|+ .+.+..
T Consensus 67 l~~~fmliFFttiglsa~~~~lkkgGk~l~if~~~a~~l~~~Qn~igi~la~~lgidpl~gllagsIsl~GGHGtaAA~~ 146 (404)
T COG0786 67 LQDVFMLIFFATIGLSASFKLLKKGGKKLAIFLATAAGLAVLQNFIGIGLAKLLGLDPLIGLLAGSISLVGGHGTAAAWG 146 (404)
T ss_pred cccHHHHHHHHHhccccchhHHHhcChhHHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHhcceeecCCCchHHHHH
Confidence 47889999999999999998887653 2222222222223345555555677788877766666443223332 344555
Q ss_pred hhhccCCCCCCCchh--HHHHHHHHHHHHHHHHHHHhhhh
Q 046529 384 NTACNRKDLVDEAFP--PTIFALFVMTCVIEPILAATYKA 421 (799)
Q Consensus 384 ~~~~~~~ii~~~~f~--~lv~~~lv~t~i~~plv~~ly~~ 421 (799)
....+.|.-+..... .-.+..+.-..+-+|+.+|+.++
T Consensus 147 ~~f~~~G~~~A~~va~A~ATfGlv~GgliGgpva~~li~k 186 (404)
T COG0786 147 PTFEDLGAEGATEVAMASATFGLVAGGLIGGPVARWLIKK 186 (404)
T ss_pred HHHHhcCCcchHHHHHHHHHHHHHHhHhcCcHHHHHHHHh
Confidence 666666654433221 11222233234467999998764
No 114
>PRK03359 putative electron transfer flavoprotein FixA; Reviewed
Probab=77.95 E-value=7 Score=41.37 Aligned_cols=112 Identities=10% Similarity=0.077 Sum_probs=62.1
Q ss_pred eccCCcchHHHHHHHHHHhhCC-CeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEE
Q 046529 625 LFLGGPDDREALAYAWRMAAHP-NVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIE 703 (799)
Q Consensus 625 ~f~GG~ddreAL~~A~rma~~~-~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E 703 (799)
.+.=.|.|+-|++.|.|+.++. +.++|++.+=+++.. +++.+++.-.. +-++....+
T Consensus 31 ~~~iN~~D~~AlE~Alrlke~~~g~~Vtvvs~Gp~~a~--------------------~~~~lr~aLAm--GaD~avli~ 88 (256)
T PRK03359 31 DAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALT--------------------NAKGRKDVLSR--GPDELIVVI 88 (256)
T ss_pred ccccChhhHHHHHHHHHHhhhcCCCEEEEEEECCcchh--------------------hHHHHHHHHHc--CCCEEEEEe
Confidence 4445699999999999999875 489999998543211 12334443332 223332222
Q ss_pred -EEe--cChHHHHHHHHhh--cCCCcEEEEcccCCC-CcccccCCCcCCCCCCCccccchhh
Q 046529 704 -NVV--NNGEEIVAAIKDL--SDNCDLYIIGRREGA-ESRLTYDLSLDNLTNFPELGVIGSV 759 (799)
Q Consensus 704 -~~v--~~~~e~~~~i~~~--~~~~DLviVGr~~~~-~s~~~~gl~~~~w~e~~eLG~iGd~ 759 (799)
... .|...|..+|... ..+|||++.|+.... .+-++-.+-+ +|-..|-+..+-++
T Consensus 89 d~~~~g~D~~~tA~~La~ai~~~~~DLVl~G~~s~D~~tgqvg~~lA-e~Lg~P~vt~v~~l 149 (256)
T PRK03359 89 DDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVG-EILNIPAINGVSKI 149 (256)
T ss_pred cCcccCcCHHHHHHHHHHHHHHhCCCEEEEcCccccCCCCcHHHHHH-HHhCCCceeeEEEE
Confidence 111 2334444444433 235999999997532 2222222211 45567776666654
No 115
>TIGR02432 lysidine_TilS_N tRNA(Ile)-lysidine synthetase, N-terminal domain. The only examples in which the wobble position of a tRNA must discriminate between G and A of mRNA are AUA (Ile) vs. AUG (Met) and UGA (stop) vs. UGG (Trp). In all bacteria, the wobble position of the tRNA(Ile) recognizing AUA is lysidine, a lysine derivative of cytidine. This family describes a protein domain found, apparently, in all bacteria in a single copy. Eukaryotic sequences appear to be organellar. The domain archictecture of this protein family is variable; some, including characterized proteins of E. coli and B. subtilis known to be tRNA(Ile)-lysidine synthetase, include a conserved 50-residue domain that many other members lack. This protein belongs to the ATP-binding PP-loop family ( pfam01171). It appears in the literature and protein databases as TilS, YacA, and putative cell cycle protein MesJ (a misnomer).
Probab=77.53 E-value=15 Score=36.61 Aligned_cols=37 Identities=16% Similarity=0.276 Sum_probs=32.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeec
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLP 657 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~ 657 (799)
||++.+.||.|+--++.++.+.++..+.+++++++..
T Consensus 1 ~v~va~SGG~DS~~ll~ll~~~~~~~~~~v~~v~vd~ 37 (189)
T TIGR02432 1 RILVAVSGGVDSMALLHLLLKLQPKLKIRLIAAHVDH 37 (189)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 5899999999999999999999887778899999853
No 116
>COG4651 RosB Kef-type K+ transport system, predicted NAD-binding component [Inorganic ion transport and metabolism]
Probab=77.47 E-value=9.6 Score=40.68 Aligned_cols=132 Identities=17% Similarity=0.159 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCC---chhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchh
Q 046529 256 ISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQP---ITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKP 332 (799)
Q Consensus 256 ~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~---~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~ 332 (799)
...-+.++|+.+.+++.+.++|..|-.++|.+.....| -.+++...+..+ =.-+....+|++..+..+.....
T Consensus 11 iv~gl~lAFl~G~lA~rlrlsPLVGyL~AGv~~gpftpGFvad~~La~~LAel----GViLLmFgvGLhfslkdLLavk~ 86 (408)
T COG4651 11 IVGGLVLAFLLGALANRLRLSPLVGYLLAGVLAGPFTPGFVADQTLAPELAEL----GVILLMFGVGLHFSLKDLLAVKA 86 (408)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHhcCCCCCCcccchhHHHHHHHh----hHHHHHHhcchheeHHHHhhHHH
Confidence 45566788899999999999999999999998864333 234555555555 23455667899988877765444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCC
Q 046529 333 WMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDE 395 (799)
Q Consensus 333 ~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~ 395 (799)
|.+-..+.-++ .-..-.+..++..|+++...+.+|+.++.-..+-+. ....+++.++.+
T Consensus 87 iAipgAl~qia--~at~lg~gL~~~lgws~~~glvfGlaLS~aSTVvll--raLqEr~lidt~ 145 (408)
T COG4651 87 IAIPGALAQIA--LATLLGMGLSSLLGWSFGTGIVFGLALSVASTVVLL--RALEERQLIDTQ 145 (408)
T ss_pred HhcchHHHHHH--HHHHHHhHHHHHcCCCcccceeeeehhhhHHHHHHH--HHHHHhcccccc
Confidence 43311111111 111223334677899999999999988887765433 333445666554
No 117
>PRK12342 hypothetical protein; Provisional
Probab=77.34 E-value=6.6 Score=41.48 Aligned_cols=33 Identities=12% Similarity=-0.065 Sum_probs=27.0
Q ss_pred EeccCCcchHHHHHHHHHHhhCCCeEEEEEEeec
Q 046529 624 MLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLP 657 (799)
Q Consensus 624 v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~ 657 (799)
+.+.=+|.|+-|++.|.|+.+ .+.++|++.+=+
T Consensus 29 ~~~~iNp~D~~AlE~AlrLk~-~g~~Vtvls~Gp 61 (254)
T PRK12342 29 AEAKISQFDLNAIEAASQLAT-DGDEIAALTVGG 61 (254)
T ss_pred CCccCChhhHHHHHHHHHHhh-cCCEEEEEEeCC
Confidence 344557999999999999995 578999999843
No 118
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=77.27 E-value=2.9 Score=42.24 Aligned_cols=50 Identities=22% Similarity=0.226 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 046529 335 FVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLN 384 (799)
Q Consensus 335 ~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~ 384 (799)
..+.+-+..+++-++++++.+++.++|++|++.+|..+.=-..-...+..
T Consensus 57 ~~Llipl~tIlGSllgg~l~~~ll~~~~~~~lav~sG~GwYSlsg~~i~~ 106 (191)
T PF03956_consen 57 RALLIPLATILGSLLGGLLASLLLGLSLKESLAVASGFGWYSLSGVLITQ 106 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHccCcHHHhHHHHHHh
Confidence 36677777889999999999999999999999988876555544444443
No 119
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=77.22 E-value=15 Score=39.81 Aligned_cols=74 Identities=22% Similarity=0.310 Sum_probs=56.0
Q ss_pred CChhhhhhee-eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 69 QPPIVGQILE-MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 69 ~P~ivg~Ila-l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
+|-++|.++. +.+ +-.+.++.=..+++.|+.|..|.++|++.+.+.+ .+.+.+++..+++++.+++.+..+++.
T Consensus 171 lpILiGmilGNld~-~~~~~l~~Gi~f~I~f~~f~LG~~lnl~~I~~~G--~~GIlL~v~vv~~t~~~~~~i~rllg~ 245 (312)
T PRK12460 171 LPLVLGMILGNLDP-DMRKFLTKGGPLLIPFFAFALGAGINLSMLLQAG--LAGILLGVLVTIVTGFFNIFADRLVGG 245 (312)
T ss_pred HHHHHHHHHhccch-hhHHHHhccceEeHHHHHHHhcCCeeHHHHHHhC--hHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 4555555555 332 2223344334458899999999999999999999 999999999999999999988887743
No 120
>COG0679 Predicted permeases [General function prediction only]
Probab=74.49 E-value=1.4e+02 Score=32.62 Aligned_cols=137 Identities=15% Similarity=0.137 Sum_probs=79.8
Q ss_pred hHHHHHHHHHhhcCC-CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046529 276 HSAIGAFTLGVIMPK-KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLV 354 (799)
Q Consensus 276 ~~ilGaf~aGl~lp~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 354 (799)
+|.+=|+++|+++.. +-+....+.+-++.+ .+--.|+-++..|+.++....... ...........-.+...+..++.
T Consensus 168 nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l-~~a~~pl~li~lG~~L~~~~~~~~-~~~~~~~~~~~kll~~Pl~~~~~ 245 (311)
T COG0679 168 NPLIIALILGLLLNLLGISLPAPLDTAVDLL-ASAASPLALIALGLSLAFLKLKGS-KPPIILIALSLKLLLAPLVALLV 245 (311)
T ss_pred CcHHHHHHHHHHHHHcCCCCcHHHHHHHHHH-HHhhhhHHHHHHhhhcchhhhccc-cchhHHHHHHHHHHHHHHHHHHH
Confidence 555556666666552 233444666666666 788999999999999998544432 23333334443567788888888
Q ss_pred HHhhCCChHHHHHHHH-HHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046529 355 SLLHKIPPKEGLALGL-LMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAAT 418 (799)
Q Consensus 355 ~~~~~~~~~e~~~lgl-~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~l 418 (799)
++.++++..+...+=+ ...|-+....+++.. .+. +++.....+....+.+.++.|.....
T Consensus 246 ~~~~~l~~~~~~v~vl~~a~P~A~~~~v~a~~---~~~-~~~laa~~i~ist~ls~~t~p~~~~~ 306 (311)
T COG0679 246 AKLLGLSGLALQVLVLLSAMPTAVNAYVLARQ---YGG-DPRLAASTILLSTLLSLLTLPLLILL 306 (311)
T ss_pred HHHcCCChHHHHHHHHHhhCcHHhHHHHHHHH---hCC-ChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988766522222 134555555444443 333 33333333333344466666555443
No 121
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=73.37 E-value=1.1e+02 Score=31.88 Aligned_cols=83 Identities=13% Similarity=0.069 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHH
Q 046529 332 PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVI 411 (799)
Q Consensus 332 ~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~ 411 (799)
.|..++..++++.+.-+..+++.++++|.+. .... .+.+|....-+...+..+.|-...-+-...+++-++-..+.
T Consensus 86 ~~~~Il~~~~~G~~~~~~s~~~la~~lg~~~--~i~~--Sl~pkSvTtpiAm~vs~~iGG~~sLta~~vvitGi~Ga~~g 161 (226)
T TIGR00659 86 YWKEIILNVAVGSVIAIISGTLLALLLGLGP--EIIA--SLLPKSVTTPIAMHVSEMIGGIPAVTAVFVILTGLLGTVFG 161 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCH--HHHH--HhhhHHhhHHHHHHHHHHhCChHHHHHHHHHHHHHHHHHHH
Confidence 3444555566666677788888899999873 3333 46899988888888887776543333333334444433444
Q ss_pred HHHHHHh
Q 046529 412 EPILAAT 418 (799)
Q Consensus 412 ~plv~~l 418 (799)
+++++++
T Consensus 162 ~~ll~~~ 168 (226)
T TIGR00659 162 PMVLRYF 168 (226)
T ss_pred HHHHHHc
Confidence 4555554
No 122
>PF01012 ETF: Electron transfer flavoprotein domain; InterPro: IPR014730 Electron transfer flavoproteins (ETFs) serve as specific electron acceptors for primary dehydrogenases, transferring the electrons to terminal respiratory systems. They can be functionally classified into constitutive, "housekeeping" ETFs, mainly involved in the oxidation of fatty acids (Group I), and ETFs produced by some prokaryotes under specific growth conditions, receiving electrons only from the oxidation of specific substrates (Group II) []. ETFs are heterodimeric proteins composed of an alpha and beta subunit, and contain an FAD cofactor and AMP [, , , , ]. ETF consists of three domains: domains I and II are formed by the N- and C-terminal portions of the alpha subunit, respectively, while domain III is formed by the beta subunit. Domains I and III share an almost identical alpha-beta-alpha sandwich fold, while domain II forms an alpha-beta-alpha sandwich similar to that of bacterial flavodoxins. FAD is bound in a cleft between domains II and III, while domain III binds the AMP molecule. Interactions between domains I and III stabilise the protein, forming a shallow bowl where domain II resides. This entry represents the N-terminal domain of both the alpha and beta subunits from Group I and Group II ETFs.; PDB: 1EFP_B 3FET_B 3IH5_B 2A1T_S 1EFV_B 1T9G_S 2A1U_B 1O96_E 1O94_C 3CLU_C ....
Probab=72.35 E-value=13 Score=36.19 Aligned_cols=125 Identities=18% Similarity=0.176 Sum_probs=64.9
Q ss_pred cchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEEEE-ec-
Q 046529 630 PDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENV-VN- 707 (799)
Q Consensus 630 ~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E~~-v~- 707 (799)
+.|+|+|+.|+++++..+.+++++-+= +.. + .++.+.+...++ .-+++...+-- ..
T Consensus 15 ~~~~e~l~~A~~La~~~g~~v~av~~G--~~~--------------~-----~~~~l~~~l~~~-G~d~v~~~~~~~~~~ 72 (164)
T PF01012_consen 15 PVSLEALEAARRLAEALGGEVTAVVLG--PAE--------------E-----AAEALRKALAKY-GADKVYHIDDPALAE 72 (164)
T ss_dssp HHHHHHHHHHHHHHHCTTSEEEEEEEE--TCC--------------C-----HHHHHHHHHHST-TESEEEEEE-GGGTT
T ss_pred HHHHHHHHHHHHHHhhcCCeEEEEEEe--cch--------------h-----hHHHHhhhhhhc-CCcEEEEecCccccc
Confidence 789999999999999999999998774 111 1 122333322222 22334332211 11
Q ss_pred -ChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEeeeccCCCCC
Q 046529 708 -NGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISRKTAN 784 (799)
Q Consensus 708 -~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq~~~~~~~~ 784 (799)
+.+....++.+. +.++|+++.|.+..... +...+. +.-..+.+.|...= .....-+.+.++.+.|...
T Consensus 73 ~~~~~~a~~l~~~~~~~~~~lVl~~~t~~g~~-la~~lA-----~~L~~~~v~~v~~l---~~~~~~~~~~r~~~gG~~~ 143 (164)
T PF01012_consen 73 YDPEAYADALAELIKEEGPDLVLFGSTSFGRD-LAPRLA-----ARLGAPLVTDVTDL---EVEDGGLVVTRPVYGGKVV 143 (164)
T ss_dssp C-HHHHHHHHHHHHHHHT-SEEEEESSHHHHH-HHHHHH-----HHHT-EEEEEEEEE---EEETTEEEEEEEETTTTEE
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCcCCCCc-HHHHHH-----HHhCCCccceEEEE---EECCCeEEEEEECCCCEEE
Confidence 334455666655 45699999999753221 111121 12234555555522 2222336666666666544
Q ss_pred c
Q 046529 785 K 785 (799)
Q Consensus 785 ~ 785 (799)
.
T Consensus 144 ~ 144 (164)
T PF01012_consen 144 A 144 (164)
T ss_dssp E
T ss_pred E
Confidence 3
No 123
>PRK10711 hypothetical protein; Provisional
Probab=72.12 E-value=79 Score=32.89 Aligned_cols=108 Identities=15% Similarity=0.172 Sum_probs=64.5
Q ss_pred HHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhh
Q 046529 298 FKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGL 377 (799)
Q Consensus 298 l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~ 377 (799)
+..-+.+-+-.+-+|+|= +...+.. .|..++.-++++.+.-++.+++.++++|.+.. + ...|.+|..
T Consensus 62 l~~lLgPAtVALAvPLY~-------q~~~lk~--~~~~I~~~~~vG~~v~i~s~~~l~~~lg~~~~--~--~~Sl~pkSV 128 (231)
T PRK10711 62 LNDLLQPAVVALAFPLYE-------QLHQIRA--RWKSIISICFIGSVVAMVTGTAVALWMGATPE--I--AASILPKSV 128 (231)
T ss_pred HHhhhhHHHHHHHHHHHH-------hHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHhhhhh
Confidence 333444444455555542 2233333 45556666667777788888889999998744 2 334689999
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046529 378 LALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAAT 418 (799)
Q Consensus 378 v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~l 418 (799)
..-+...+..+.|-+..-+-...+++-++-..+.++++|++
T Consensus 129 TtPIAm~is~~iGG~~sLta~~ViitGi~Ga~~g~~llk~~ 169 (231)
T PRK10711 129 TTPIAMAVGGSIGGIPAISAVCVIFVGILGAVFGHTLLNAM 169 (231)
T ss_pred hHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888887766543333333334444334445555554
No 124
>TIGR00210 gltS sodium--glutamate symport carrier (gltS).
Probab=71.02 E-value=56 Score=37.00 Aligned_cols=156 Identities=12% Similarity=0.135 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHhcc--cCCChhhhhhee------ec----c-CCChHHHHHHHHHHHHHHHHHHhhccChHHHHh
Q 046529 48 IQLAYVLFINHLLVAILKP--LRQPPIVGQILE------MF----P-YKSVMLLETYAYIALLFYLFLIGLDMDINLISA 114 (799)
Q Consensus 48 ~qi~lil~~s~~~~~ll~r--l~~P~ivg~Ila------l~----p-~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~ 114 (799)
..+.+.+.+++.+...++. +.+|.+++-+++ +. . .-..+.++.++++.+-+++..+=..+++..+..
T Consensus 222 ~~i~iai~iG~~i~~~l~~~~~~lP~fv~am~~giiirni~~~~~~~~~~~~~i~~I~~~sLdlfl~~AlmsL~L~~l~~ 301 (398)
T TIGR00210 222 ALIAVCLLVGYELNDLVAKTALMLPTFVWCLFVGVILRNPLSFKKFPWVAERAVSVIGNVSLSLFLAIALMSLQLWELAD 301 (398)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHhCcHHHHHH
Confidence 4455555667777776664 679999888877 11 1 123458999999999999988888999999999
Q ss_pred cCCCchhhHHHHHHHHHHHHHHHHHHHH-HhcCcchhhhhhHHHHHHHHHhhcc--HHHHHHHHHhccccCChhHHHHHH
Q 046529 115 TGMTNKVVSIALAGTLVPMAVGLGAFFL-VIGESQEFITQGGYMFCAVALTATN--FQELTQILTDLRILHLDIGRIALS 191 (799)
Q Consensus 115 ~~~~~~~~~ia~~~~lip~~~g~~~~~~-l~~~~~~~~~~~~~l~l~~~ls~Ts--~pvv~~iL~elkl~~s~~g~lals 191 (799)
.. -..+.+.+.+++...+....+.+- ++++.+.. ...+-.+|..+..|+ ..-...+-+++|-.+...=-.=+-
T Consensus 302 ~a--~Plliil~~q~i~~~l~~~fv~fr~mg~~ydaa--V~~ag~~G~~lGatptaianm~av~~~yg~s~~af~ivPlv 377 (398)
T TIGR00210 302 LA--GPIALILLVQVMFMALYAIFVTFRLMGKDYDAA--VLCAGHCGFGLGATPTAIANMQAVTERFGPSHQAFIVVPLV 377 (398)
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHhHHhccchHHHH--HHhcccccccccchHHHHHHHHHHHhccCCCCcceehhhhH
Confidence 99 888888888888887655544443 33321111 112335555554444 333334444555444433334455
Q ss_pred HHHHHHHHHHHHHHHH
Q 046529 192 SALLSDLFTWMLLLAC 207 (799)
Q Consensus 192 ~a~v~D~~~~ill~~~ 207 (799)
.+.+-|+....++...
T Consensus 378 gaf~id~~n~~~i~~f 393 (398)
T TIGR00210 378 GAFFIDIINALVIKQF 393 (398)
T ss_pred HHHHHHHhhHHHHHHH
Confidence 6777777766655444
No 125
>TIGR02039 CysD sulfate adenylyltransferase, small subunit. In Escherichia coli, ATP sulfurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulfur-containing amino acids. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules.
Probab=70.68 E-value=14 Score=39.80 Aligned_cols=39 Identities=18% Similarity=0.169 Sum_probs=31.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGK 659 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~ 659 (799)
+.++.|.||+|+--.|.+|.+.-..-+..+.++++-+.-
T Consensus 21 ~~vv~~SGGKDS~VlLhLa~kaf~~~~~p~~vl~IDTG~ 59 (294)
T TIGR02039 21 RPVMLYSIGKDSSVLLHLARKAFYPGPLPFPLLHVDTGW 59 (294)
T ss_pred CcEEEEecChHHHHHHHHHHHHhcccCCCeEEEEEecCC
Confidence 567889999999999999998865445678889986543
No 126
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=70.61 E-value=5.2 Score=34.27 Aligned_cols=48 Identities=13% Similarity=0.109 Sum_probs=38.1
Q ss_pred ChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccH-HHHHhhhccCCCce
Q 046529 543 SMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNR-TVNLNLLQNTPCSV 595 (799)
Q Consensus 543 ~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~-~vn~~Vl~~ApCsV 595 (799)
.+++-+.+.|++.+++.|+.|.|.....+... .+ +...++.+.++|+|
T Consensus 35 ~~~~~~~~~a~~~~~~~Iv~G~~~~d~~~~~~-----~~~~~~~~~~~~~~~~v 83 (86)
T cd01984 35 AFVRILKRLAAEEGADVIILGHNADDVAGRRL-----GASANVLVVIKGAGIPV 83 (86)
T ss_pred HHHHHHHHHHHHcCCCEEEEcCCchhhhhhcc-----CchhhhhhcccccCCce
Confidence 78999999999999999999999876544443 22 34568889999986
No 127
>PF01171 ATP_bind_3: PP-loop family; InterPro: IPR011063 This entry represents the PP-loop motif superfamily [,]. The PP-loop motif appears to be a modified version of the P-loop of nucleotide binding domain that is involved in phosphate binding []. Named PP-motif, since it appears to be a part of a previously uncharacterised ATP pyrophophatase domain. ATP sulfurylases, Escherichia coli NtrL, and Bacillus subtilis OutB consist of this domain alone. In other proteins, the pyrophosphatase domain is associated with amidotransferase domains (type I or type II), a putative citrulline-aspartate ligase domain or a nitrilase/amidase domain.; PDB: 3A2K_A 2E89_B 2E21_D 1WY5_B 1NI5_A.
Probab=70.60 E-value=45 Score=33.11 Aligned_cols=92 Identities=20% Similarity=0.270 Sum_probs=53.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
+|++.+.||+|+--.|.+..++.++.+.+++++++...-.. +...+.+++.++.++.. +.
T Consensus 1 ki~va~SGG~DS~~Ll~~l~~~~~~~~~~~~~~~vdh~~~~----------------~s~~~~~~v~~~~~~~~----i~ 60 (182)
T PF01171_consen 1 KILVAVSGGKDSMALLHLLKELRRRNGIKLIAVHVDHGLRE----------------ESDEEAEFVEEICEQLG----IP 60 (182)
T ss_dssp EEEEE--SSHHHHHHHHHHHHHHTTTTTEEEEEEEE-STSC----------------CHHHHHHHHHHHHHHTT-----E
T ss_pred CEEEEEcCCHHHHHHHHHHHHHHHhcCCCeEEEEEecCCCc----------------ccchhHHHHHHHHHhcC----Cc
Confidence 58899999999999999999999999999999999754222 12334567777766532 33
Q ss_pred EEEEEec-------ChHHHHHHHH-----hh--cCCCcEEEEcccC
Q 046529 701 YIENVVN-------NGEEIVAAIK-----DL--SDNCDLYIIGRRE 732 (799)
Q Consensus 701 y~E~~v~-------~~~e~~~~i~-----~~--~~~~DLviVGr~~ 732 (799)
|.-+.++ +-++.....| +. ..++|.++.|-+.
T Consensus 61 ~~~~~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~g~~~i~~GHh~ 106 (182)
T PF01171_consen 61 LYIVRIDEDRKKGSNIEECARELRYQFLREIAKEEGCNKIALGHHL 106 (182)
T ss_dssp EEEEE--CHCCTTSTCHHHHHHHHHHHHHHHHHTTT-CEEE---BH
T ss_pred eEEEEeeeeecccCCHHHHHHHHHHHHHHHhhhcccccceeecCcC
Confidence 2222222 2233333232 33 4568999999764
No 128
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=69.48 E-value=24 Score=41.96 Aligned_cols=89 Identities=10% Similarity=0.158 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHhcccC-----CChhhhhhee------eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCc
Q 046529 51 AYVLFINHLLVAILKPLR-----QPPIVGQILE------MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTN 119 (799)
Q Consensus 51 ~lil~~s~~~~~ll~rl~-----~P~ivg~Ila------l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~ 119 (799)
.+.++++..+++++-|++ +-.+.|-+++ +.+ ..-+.+.++|+++|+|.+|++.-+..++.-+ |
T Consensus 12 ~l~lfl~i~lG~~lG~iki~~~~LG~~~gvLfvgl~~G~~g~----~i~~~v~~~gl~lFvy~vG~~~Gp~Ff~~l~--~ 85 (562)
T TIGR03802 12 EIALFLSLALGYLIGKIKFGSFQLGGVAGSLIVAVLIGQLGI----QIDPGVKAVFFALFIFAIGYEVGPQFFASLK--K 85 (562)
T ss_pred HHHHHHHHHHhHhhcceEEeeeecchHHHHHHHHHHHHhcCC----CCChHHHHHHHHHHHHHhhhccCHHHHHHHH--h
Confidence 344555556666666654 3333333333 322 1333477899999999999999998765444 4
Q ss_pred ---hhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 120 ---KVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 120 ---~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
+-..+++.-+++.+++.++++++++.
T Consensus 86 ~g~~~~~~a~~~~~~~~~~~~~~~~~~g~ 114 (562)
T TIGR03802 86 DGLREIILALVFAVSGLITVYALAKIFGL 114 (562)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 44444444444555555555655543
No 129
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=69.10 E-value=16 Score=39.57 Aligned_cols=115 Identities=14% Similarity=0.139 Sum_probs=71.4
Q ss_pred hhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCC------ChHHHHHHHHHHhhhhh
Q 046529 304 DFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKI------PPKEGLALGLLMNTKGL 377 (799)
Q Consensus 304 ~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~------~~~e~~~lgl~l~~kG~ 377 (799)
.+.++++=|+.|.-+|..+|++-+...+. ..++-..+=++ +..+++.+.+.|+ +.+|+..+|.+=..-|-
T Consensus 59 gi~~~l~P~LIFlGIGAmtDFgpllanP~---~~llGaaAQ~G-iF~t~~~A~~lGf~~~~~~~~~eAAsIgIIGgADGP 134 (354)
T TIGR01109 59 GIGSGIAPLLIFMGIGALTDFGPLLANPR---TLLLGAAAQFG-IFATVFGALTLNFFGIISFSLPQAAAIGIIGGADGP 134 (354)
T ss_pred HHhcchHHHHHHHhccHHhhhHHHHhChH---HHHHHHHHHhh-HHHHHHHHHHhCCCcccccChhhceeeeeeccCCCc
Confidence 44578899999999999999987765421 22222222222 2334556666777 67999999998788888
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 378 LALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 378 v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
.++.+.+..-. .++.+-......-|+++ =.+-||++|.+-.+++|
T Consensus 135 t~If~s~~lap-~Llg~IaVAAYsYMaLv-PiiqPpimklLttkkeR 179 (354)
T TIGR01109 135 TAIYLSGKLAP-ELLAAIAVAAYSYMALV-PIIQPPIMKALTSEKER 179 (354)
T ss_pred hhhhhHhhhhh-HHHHHHHHHHHHHHHHH-hcccchHHHhhcChHHh
Confidence 77776654321 12322222333334444 67789999987654333
No 130
>PRK09903 putative transporter YfdV; Provisional
Probab=68.37 E-value=50 Score=36.01 Aligned_cols=101 Identities=14% Similarity=0.068 Sum_probs=61.1
Q ss_pred cCCChhhhhhee----e----ccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHH-HHHHHHHHHH
Q 046529 67 LRQPPIVGQILE----M----FPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALA-GTLVPMAVGL 137 (799)
Q Consensus 67 l~~P~ivg~Ila----l----~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~-~~lip~~~g~ 137 (799)
++-|.+++.+++ + .|..-.+.++.+++...-+-||..|..+....++.. ++.+...+. -++.|++. +
T Consensus 171 ~~nP~iia~~~gl~~~l~~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~L~~~~~~~~---~~~~~~~~~Kli~~P~i~-~ 246 (314)
T PRK09903 171 AKEPVVWAPVLATILVLVGVKIPAAWDPTFNLIAKANSGVAVFAAGLTLAAHKFEFS---AEIAYNTFLKLILMPLAL-L 246 (314)
T ss_pred HhchHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc---HHHHHHHHHHHHHHHHHH-H
Confidence 456988888888 2 344457889999999999999999999877655433 333333333 34466654 3
Q ss_pred HHHHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHHHHhc
Q 046529 138 GAFFLVIGESQEFITQGGYMFCAVALTATNFQELTQILTDL 178 (799)
Q Consensus 138 ~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~iL~el 178 (799)
++..+++.+ ....-....++....++.+.++.+.
T Consensus 247 ~~~~~~~l~-------~~~~~v~vl~aa~P~a~~~~i~A~~ 280 (314)
T PRK09903 247 LVGMACHLN-------SEHLQMMVLAGALPPAFSGIIIASR 280 (314)
T ss_pred HHHHHcCCC-------cHHHHHHHHHHcccHHHHHHHHHHH
Confidence 333333321 1223344555555556666666553
No 131
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=68.26 E-value=40 Score=32.80 Aligned_cols=84 Identities=17% Similarity=0.105 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCc----hhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHH-
Q 046529 86 MLLETYAYIALLFYLFLIGLDMDINLISATGMTN----KVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCA- 160 (799)
Q Consensus 86 ~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~----~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~- 160 (799)
.....+.++|+.+|++.+|++--.+.+..-. + ....++..-.++|.+++..+...+.+ . + .....|
T Consensus 50 ~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~--~~gg~~~~~~g~~v~~~~~~~~~~~~~~~~~-~--~----~~~~~G~ 120 (154)
T TIGR01625 50 SANLFIREFGLMLFLYGVGLSAGPGFFSSLK--DGGGLLRINGGALITVVPTLLVAVALIKLLR-I--N----YALTAGM 120 (154)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH--hcChHHHHHHHHHHHHHHHHHHHHHHHHHhC-C--C----HHHHHHH
Confidence 4667788999999999999999887665433 3 22334444444555555555544332 1 1 122333
Q ss_pred HHHhhccHHHHHHHHHhc
Q 046529 161 VALTATNFQELTQILTDL 178 (799)
Q Consensus 161 ~~ls~Ts~pvv~~iL~el 178 (799)
.+=+.|+.|.+....+..
T Consensus 121 ~aGa~T~tpaL~aa~~~~ 138 (154)
T TIGR01625 121 LAGATTNTPALDAANDTL 138 (154)
T ss_pred HhccccChHHHHHHHHHh
Confidence 334567778777665544
No 132
>COG3263 NhaP-type Na+/H+ and K+/H+ antiporters with a unique C-terminal domain [Inorganic ion transport and metabolism]
Probab=67.82 E-value=43 Score=37.84 Aligned_cols=78 Identities=17% Similarity=0.196 Sum_probs=53.7
Q ss_pred HhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHH
Q 046529 302 LDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLAL 380 (799)
Q Consensus 302 l~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l 380 (799)
+..++..+.+.+...-.|++++++.+... .|....+..+...+.-.+....+.+.++.+|-|++.+|.+....-..++
T Consensus 59 ~Ay~vg~lALaiILfdgG~~T~lss~r~a-~~palsLATlGVl~Ts~Ltg~aA~~ll~l~wle~~LiGAiVgSTDAAAV 136 (574)
T COG3263 59 FAYMVGNLALAIILFDGGFGTQLSSFRVA-AGPALSLATLGVLITSGLTGVAAAYLLNLDWLEGLLIGAIVGSTDAAAV 136 (574)
T ss_pred HHHHHHHHHHHHHhhcCccCCcHHHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHhhccccHHHH
Confidence 44445566666666778999998877643 4444445555555566666777888999999999999998765544333
No 133
>TIGR01625 YidE_YbjL_dupl AspT/YidE/YbjL antiporter duplication domain. This model represents a domain that is duplicated the aspartate-alanine antiporter AspT, as well as HI0035 of Haemophilus influenzae, YidE and YbjL of E. coli, and a number of other known or putative transporters. Member proteins may have 0, 1, or 2 copies of TrkA potassium uptake domain pfam02080 between the duplications. The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=64.49 E-value=20 Score=34.86 Aligned_cols=87 Identities=15% Similarity=0.098 Sum_probs=54.2
Q ss_pred HHHHHHHHhhcCCC---CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccc---cccCchhHHHHHHHHHHHHHHHHHHH
Q 046529 278 AIGAFTLGVIMPKK---QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLV---VFSSHKPWMFVLVVLFGFGMSKILIT 351 (799)
Q Consensus 278 ilGaf~aGl~lp~~---~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~---~l~~~~~~~~~~~ii~~~~~~K~~~~ 351 (799)
.-|++++|+++..- .|....+-.....++.++.+-+|...+|++.-.+ .+.....+....+..++.++.-.+..
T Consensus 24 ~~G~L~vgL~~G~~~~~~p~~~~~p~~~~~~l~~~GL~lFl~~vGl~aG~~f~~~l~~~gg~~~~~~g~~v~~~~~~~~~ 103 (154)
T TIGR01625 24 AGGVLFVGLLLGHFGATGPLTWYIPFSANLFIREFGLMLFLYGVGLSAGPGFFSSLKDGGGLLRINGGALITVVPTLLVA 103 (154)
T ss_pred cHHHHHHHHHHHhccccCCcceecChhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHH
Confidence 45677777777642 3344445455666678899999999999998643 44332112233333444444456667
Q ss_pred HHHHHhhCCChHH
Q 046529 352 FLVSLLHKIPPKE 364 (799)
Q Consensus 352 ~l~~~~~~~~~~e 364 (799)
++..+++|+++..
T Consensus 104 ~~~~~~~~~~~~~ 116 (154)
T TIGR01625 104 VALIKLLRINYAL 116 (154)
T ss_pred HHHHHHhCCCHHH
Confidence 7777889998754
No 134
>PRK05253 sulfate adenylyltransferase subunit 2; Provisional
Probab=64.48 E-value=24 Score=38.37 Aligned_cols=39 Identities=18% Similarity=0.193 Sum_probs=31.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGK 659 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~ 659 (799)
++++.|.||+|+--.|.+|.+.-...+..+.++++-+.-
T Consensus 29 ~~vv~~SGGKDS~VLL~La~ka~~~~~~~~~vl~iDTG~ 67 (301)
T PRK05253 29 NPVMLYSIGKDSSVMLHLARKAFYPGKLPFPLLHVDTGW 67 (301)
T ss_pred CEEEEecCCHHHHHHHHHHHHhhcccCCCeeEEEEeCCC
Confidence 889999999999999999988655445677888886543
No 135
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=64.21 E-value=34 Score=41.61 Aligned_cols=121 Identities=20% Similarity=0.246 Sum_probs=75.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeE
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESIS 700 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~ 700 (799)
||+|-..|+|...--++.|.|+|+.-++..|++++..++... .. +.+++.=++.+ ++.++... .+
T Consensus 250 ~ilvcI~~~~~~e~liR~a~RlA~~~~a~~~av~v~~~~~~~---~~--------~~~~~~l~~~~-~Lae~lGa--e~- 314 (890)
T COG2205 250 RILVCISGSPGSEKLIRRAARLASRLHAKWTAVYVETPELHR---LS--------EKEARRLHENL-RLAEELGA--EI- 314 (890)
T ss_pred eEEEEECCCCchHHHHHHHHHHHHHhCCCeEEEEEecccccc---cc--------HHHHHHHHHHH-HHHHHhCC--eE-
Confidence 899998889999999999999999999999999998665431 11 12221111222 22222221 11
Q ss_pred EEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 701 YIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 701 y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
+++. +.++..+|-+- ..+.--+|+||+++. .|-+.-. |.+.|-|+..- ....|-+|
T Consensus 315 ---~~l~-~~dv~~~i~~ya~~~~~TkiViG~~~~~-----------rw~~~~~-~~l~~~L~~~~--~~idv~ii 372 (890)
T COG2205 315 ---VTLY-GGDVAKAIARYAREHNATKIVIGRSRRS-----------RWRRLFK-GSLADRLAREA--PGIDVHIV 372 (890)
T ss_pred ---EEEe-CCcHHHHHHHHHHHcCCeeEEeCCCcch-----------HHHHHhc-ccHHHHHHhcC--CCceEEEe
Confidence 2232 34455555443 445778999999873 6765433 88888888653 33344444
No 136
>COG0679 Predicted permeases [General function prediction only]
Probab=63.41 E-value=1.1e+02 Score=33.33 Aligned_cols=76 Identities=24% Similarity=0.250 Sum_probs=57.2
Q ss_pred cCCChhhhhhee--------eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHH--HHHHHHHHH
Q 046529 67 LRQPPIVGQILE--------MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALA--GTLVPMAVG 136 (799)
Q Consensus 67 l~~P~ivg~Ila--------l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~--~~lip~~~g 136 (799)
++.|.+++.+++ -+|+.-.+.++.+++...-+-|+..|+.+.....++.. .+....+.. -++.|.+ .
T Consensus 166 ~~nP~i~a~i~g~~~~~~~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~~~~~~~--~~~~~~~~~~kll~~Pl~-~ 242 (311)
T COG0679 166 LTNPLIIALILGLLLNLLGISLPAPLDTAVDLLASAASPLALIALGLSLAFLKLKGSK--PPIILIALSLKLLLAPLV-A 242 (311)
T ss_pred HhCcHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchhhhcccc--chhHHHHHHHHHHHHHHH-H
Confidence 568999998888 23455678899999999999999999999997777777 777777666 4555654 4
Q ss_pred HHHHHHHhc
Q 046529 137 LGAFFLVIG 145 (799)
Q Consensus 137 ~~~~~~l~~ 145 (799)
..+++.++.
T Consensus 243 ~~~~~~~~l 251 (311)
T COG0679 243 LLVAKLLGL 251 (311)
T ss_pred HHHHHHcCC
Confidence 445555543
No 137
>COG2431 Predicted membrane protein [Function unknown]
Probab=63.17 E-value=2.1e+02 Score=30.48 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 046529 336 VLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLN 384 (799)
Q Consensus 336 ~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~ 384 (799)
.+..-++.+++-++++.+.+.+.++|++++++++..+.=-......++.
T Consensus 165 gl~l~~i~ilssliGG~iaa~~l~lpl~~~lAmasG~GWYSlsG~ll~~ 213 (297)
T COG2431 165 GLILAFITLLSSLIGGLIAAFLLDLPLTTGLAMASGFGWYSLSGILLTE 213 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhccchhhhhhHHHhc
Confidence 3445555667788899999999999999999887765544444444443
No 138
>PF05145 AmoA: Putative ammonia monooxygenase; InterPro: IPR007820 This family contains sequences annotated as ammonia monooxygenase. The AmoA gene product from Pseudomonas putida has been characterised as ammonia monooxygenase []. Ammonia monooxygenase catalyses the oxidation of NH(3) to NH(2)OH.
Probab=62.66 E-value=34 Score=37.54 Aligned_cols=95 Identities=20% Similarity=0.175 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHHHHHHhcccCCCh--hhhhhee-----eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCch
Q 046529 48 IQLAYVLFINHLLVAILKPLRQPP--IVGQILE-----MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNK 120 (799)
Q Consensus 48 ~qi~lil~~s~~~~~ll~rl~~P~--ivg~Ila-----l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~ 120 (799)
.++.+++.++...+++++|+|+|. ++|=+++ .+.......-+.+..++.+++=-.+|.+++...+++.. +
T Consensus 155 ~~l~~l~~~~~~g~~l~~~l~iPa~~llGpml~~a~~~~~~~~~~~~P~~l~~~aqv~iG~~iG~~f~~~~l~~~~---~ 231 (318)
T PF05145_consen 155 LWLALLALAALAGGLLARRLRIPAPWLLGPMLVSAILNLFGGPSFSLPPWLVNAAQVLIGASIGSRFTRETLRELR---R 231 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHccccHHHHHHHH---H
Confidence 345556677788899999999875 4454444 22111111123344555555666999999999887755 5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 121 VVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 121 ~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
.+..++...+.-+.++.+.++.+..
T Consensus 232 ~~~~~l~~~~~~l~~~~~~a~~l~~ 256 (318)
T PF05145_consen 232 LLPPALLSTLLLLALCALFAWLLSR 256 (318)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555555556666655544
No 139
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=62.59 E-value=2.3e+02 Score=30.68 Aligned_cols=91 Identities=16% Similarity=0.140 Sum_probs=60.5
Q ss_pred hhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhh
Q 046529 307 VSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTA 386 (799)
Q Consensus 307 ~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~ 386 (799)
..+++-.|++.++.-.|+..+...+.|..... ...+...+..+..+++++.+..+-...++ -|.-|-.+.-+...+
T Consensus 275 gtv~lY~~v~vias~Ad~~~i~taP~~i~~gf---~il~~h~~v~f~~~KlF~~dL~~i~~Asl-AniGG~~sAp~~A~A 350 (384)
T COG5505 275 GTVLLYLFVVVIASPADLRLIVTAPLIILFGF---IILISHLAVSFAAGKLFRVDLEEILLASL-ANIGGPTSAPAMAIA 350 (384)
T ss_pred hHHHHHHHHHHhccchhHHHHHhhhHHHHHHH---HHHHHHHHHHHHHHHHHHhHHHHHHHHHH-hccCCccchhHHHhh
Confidence 46677889999999999988876544433222 23345667777789999988776544444 688888887777777
Q ss_pred ccCCCCCCCchhHHHHHHHH
Q 046529 387 CNRKDLVDEAFPPTIFALFV 406 (799)
Q Consensus 387 ~~~~ii~~~~f~~lv~~~lv 406 (799)
+....+ ..-++|.++
T Consensus 351 ~nr~lv-----~~gvlmg~l 365 (384)
T COG5505 351 KNRELV-----APGVLMGTL 365 (384)
T ss_pred cCchhc-----chHHHHHHH
Confidence 754433 334445444
No 140
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=61.59 E-value=2e+02 Score=29.74 Aligned_cols=84 Identities=17% Similarity=0.159 Sum_probs=55.6
Q ss_pred HHHHHHhcccC----CChhhhhhee-----ecc------CCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhh
Q 046529 58 HLLVAILKPLR----QPPIVGQILE-----MFP------YKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVV 122 (799)
Q Consensus 58 ~~~~~ll~rl~----~P~ivg~Ila-----l~p------~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~ 122 (799)
.+..++.||.+ .|-+++.++. ++. ..+.++++.+ +|-.-.-|.+-+-=+++.+||++ +..+
T Consensus 19 ~~a~~l~~r~~~~~l~PlLv~~~~li~~L~~~~i~Y~~Y~~g~~~i~~l--LgPAtVAlAvPLYkq~~~ik~~w--~~I~ 94 (230)
T COG1346 19 FAAKRLYKRTKSPFLNPLLVATVLLIAFLLLFGISYEDYMKGGQWINFL--LGPATVALAVPLYKQRHLIKRHW--KPIL 94 (230)
T ss_pred HHHHHHHHhcCCcccchHHHHHHHHHHHHHHcCCCHHHHhcccHHHHHH--HHHHHHHHhhHHHHHHHHHHHHH--HHHH
Confidence 34455566665 4666665554 222 1234555555 34444556666767889999999 8888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q 046529 123 SIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 123 ~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
.-.+.+.++.++.+..++.+++.
T Consensus 95 ~g~~vGs~~ai~s~~llak~~g~ 117 (230)
T COG1346 95 AGVLVGSVVAIISGVLLAKLFGL 117 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC
Confidence 88888888888888888888875
No 141
>cd01992 PP-ATPase N-terminal domain of predicted ATPase of the PP-loop faimly implicated in cell cycle control [Cell division and chromosome partitioning]. This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This domain has a strongly conserved motif SGGXD at the N terminus.
Probab=61.28 E-value=48 Score=32.67 Aligned_cols=38 Identities=24% Similarity=0.384 Sum_probs=32.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
+|++.+.||.|+--++.++.+...+.+.+++++++...
T Consensus 1 ~v~v~~SGG~DS~vl~~l~~~~~~~~~~~v~~v~id~~ 38 (185)
T cd01992 1 KILVAVSGGPDSMALLHLLSELKPRLGLRLVAVHVDHG 38 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHHHcCCcEEEEEecCC
Confidence 57899999999999999999988766778888888543
No 142
>TIGR00840 b_cpa1 sodium/hydrogen exchanger 3. This model is specific for the eukaryotic members members of this family.
Probab=60.47 E-value=2.5e+02 Score=33.35 Aligned_cols=75 Identities=16% Similarity=0.092 Sum_probs=49.2
Q ss_pred hhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHh---------hCCChHHHHHHHHHHhhhhh
Q 046529 307 VSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLL---------HKIPPKEGLALGLLMNTKGL 377 (799)
Q Consensus 307 ~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~---------~~~~~~e~~~lgl~l~~kG~ 377 (799)
..+++|....-.|+.+|...+.. ++..++.+.+++++.-.+.+....++ .++|+.+++.+|.++++-.-
T Consensus 69 ~~~~LPpIlFe~g~~l~~~~f~~--n~~~Il~lAv~Gvlit~~~ig~~l~~~~~~~~~~~~~l~~~~allfGAiiSaTDP 146 (559)
T TIGR00840 69 FLYLLPPIVLDAGYFMPQRNFFE--NLGSILIFAVVGTLINAFVIGLSLYGICLIGGFGSIDIGLLDNLLFGSLISAVDP 146 (559)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccCCCHHHHHHHhHHhcCCch
Confidence 46788888889999999988876 34434433333333333322222221 25699999999999999887
Q ss_pred HHHHHH
Q 046529 378 LALIVL 383 (799)
Q Consensus 378 v~l~~~ 383 (799)
+.....
T Consensus 147 VAVlai 152 (559)
T TIGR00840 147 VAVLAV 152 (559)
T ss_pred HHHHHH
Confidence 766643
No 143
>COG4827 Predicted transporter [General function prediction only]
Probab=60.28 E-value=1.5e+02 Score=30.05 Aligned_cols=52 Identities=21% Similarity=0.145 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHH
Q 046529 90 TYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFF 141 (799)
Q Consensus 90 ~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~ 141 (799)
..-..|..+.+|..|+++.+..=..+-.+|++..|+....+....++.+..+
T Consensus 9 l~~~~gIl~~ilIfGlKtGlg~GFag~~~r~a~~Iaa~yg~li~a~~gla~~ 60 (239)
T COG4827 9 LTYVIGILIGILIFGLKTGLGCGFAGITTREALTIAASYGFLILAFGGLADH 60 (239)
T ss_pred HHHHHHHHHHHHHHhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3347888899999999887765433322266666665544444344444333
No 144
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=59.77 E-value=2.2e+02 Score=29.42 Aligned_cols=107 Identities=14% Similarity=0.170 Sum_probs=62.8
Q ss_pred HHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhh
Q 046529 298 FKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGL 377 (799)
Q Consensus 298 l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~ 377 (799)
+..-+++-+-.+-+|+|= +...+.. .|..++.-++++.+.-+..+++.++++|.+.. . ...+.+|..
T Consensus 51 l~~lLgPatVALAvPLY~-------~~~~l~~--~~~~il~~~~~g~~~~~~~~~~l~~~lgl~~~--~--~~Sl~pkSV 117 (215)
T PF04172_consen 51 LSFLLGPATVALAVPLYR-------QRRLLKK--NWIPILVGVLVGSLVSIFSAVLLARLLGLSPE--I--ILSLAPKSV 117 (215)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHCcCHH--H--HHHHHHHHh
Confidence 333444444455555542 2233333 45556666667777788888888999998753 3 334689998
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 046529 378 LALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAA 417 (799)
Q Consensus 378 v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ 417 (799)
..-+...+..+.|-...-+-...++.-++-..+.++++++
T Consensus 118 TtpiAi~is~~iGG~~sLta~~VvitGi~Ga~~g~~llk~ 157 (215)
T PF04172_consen 118 TTPIAIEISEQIGGIPSLTAVFVVITGILGAVLGPPLLKL 157 (215)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhHHHHhHHHHHhH
Confidence 8888888887777554333333333333333344555555
No 145
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=59.17 E-value=1.4e+02 Score=28.54 Aligned_cols=28 Identities=25% Similarity=0.024 Sum_probs=20.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh
Q 046529 44 PLFLIQLAYVLFINHLLVAILKPLRQPP 71 (799)
Q Consensus 44 ~~~l~qi~lil~~s~~~~~ll~rl~~P~ 71 (799)
..++.|+++++.+..+...+.+-+++|-
T Consensus 7 ~~~l~ql~ill~~~~lGe~i~~ll~lPi 34 (141)
T PRK04125 7 YSFLHQAFIFAAIMLISNIIASFLPIPM 34 (141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 4678899888888877777777666553
No 146
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=58.58 E-value=3e+02 Score=30.63 Aligned_cols=67 Identities=13% Similarity=0.084 Sum_probs=44.4
Q ss_pred hHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChH
Q 046529 296 NTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPK 363 (799)
Q Consensus 296 ~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~ 363 (799)
..+.+-++.+ .....|+-.+.+|..+..........+......+++.++.-.+.++...+.++++..
T Consensus 269 ~~i~~~~~~l-g~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rlii~P~i~~~~~~~~~l~~~ 335 (385)
T PF03547_consen 269 SFITDSLSYL-GAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLIILPLIGIGIVFLLGLDGD 335 (385)
T ss_pred hHHHHHHHHH-HhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH
Confidence 5566666666 688899999999998875433322133334445666666777777777777776544
No 147
>PRK04972 putative transporter; Provisional
Probab=57.91 E-value=84 Score=37.32 Aligned_cols=54 Identities=17% Similarity=0.275 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHhhccChHHH---HhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 90 TYAYIALLFYLFLIGLDMDINLI---SATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 90 ~la~lGli~~lFl~Gle~d~~~l---~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
.+.++|+.+|+|.+|++.-+..+ |+.+ .+...+++...++++++++.++++++.
T Consensus 60 ~~~~~gl~lF~~~vG~~~Gp~F~~~l~~~g--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (558)
T PRK04972 60 DALNLGFMLFIFCVGVEAGPNFFSIFFRDG--KNYLMLALVMVGSALVIALGLGKLFGW 116 (558)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34689999999999999988754 5556 666777777777787777777776553
No 148
>cd01993 Alpha_ANH_like_II This is a subfamily of Adenine nucleotide alpha hydrolases superfamily.Adeninosine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins is predicted to bind ATP. This domainhas a strongly conserved motif SGGKD at the N terminus.
Probab=57.72 E-value=98 Score=30.30 Aligned_cols=38 Identities=18% Similarity=0.259 Sum_probs=31.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCC--CeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHP--NVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~--~v~ltvvr~~~~ 658 (799)
||++.+.||.|+--.+.++.+..++- +.+++.+++...
T Consensus 1 ~v~v~~SGG~DS~~ll~~l~~~~~~~~~~~~~~~~~~d~~ 40 (185)
T cd01993 1 RILVALSGGKDSLVLLHVLKKLQRRYPYGFELEALTVDEG 40 (185)
T ss_pred CEEEEeCCCHHHHHHHHHHHHHHhhcCCCeEEEEEEEECC
Confidence 58999999999999999998887654 778888888643
No 149
>COG3969 Predicted phosphoadenosine phosphosulfate sulfotransferase [General function prediction only]
Probab=55.49 E-value=27 Score=37.97 Aligned_cols=35 Identities=23% Similarity=0.292 Sum_probs=31.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCe-EEEEEEe
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNV-KLTVVRF 655 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v-~ltvvr~ 655 (799)
+|||-|.||+|+-..|.++.+.|+..+- ++.|+++
T Consensus 29 ~VcVSFSGGKDS~lmLhL~~~~ar~~~~~~i~Vlfi 64 (407)
T COG3969 29 RVCVSFSGGKDSGLMLHLVAEVARENGRDKISVLFI 64 (407)
T ss_pred eEEEEecCCCchhHHHHHHHHHHHHhCCCceEEEEE
Confidence 9999999999999999999999977655 7888877
No 150
>cd01984 AANH_like Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases Universal Stress Response protein and electron transfer flavoprotein (ETF). The domain forms a apha/beta/apha fold which binds to Adenosine nucleotide.
Probab=54.49 E-value=14 Score=31.46 Aligned_cols=33 Identities=21% Similarity=0.294 Sum_probs=27.8
Q ss_pred EEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEe
Q 046529 622 LLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRF 655 (799)
Q Consensus 622 I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~ 655 (799)
|++++.||+|+..++.+|.+.+ ..+.+++++++
T Consensus 1 ilv~~sgg~dS~~~l~~~~~~~-~~~~~~~~~~~ 33 (86)
T cd01984 1 ILVALSGGLDSSVLLHLAKRLK-SGGPEVVALVV 33 (86)
T ss_pred CEEEeeCCHHHHHHHHHHHHHH-hcCCCEEEEEe
Confidence 5789999999999999999987 44667777776
No 151
>PRK04972 putative transporter; Provisional
Probab=53.11 E-value=91 Score=37.05 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=60.2
Q ss_pred hhHHHHHHHHHhhcCC---CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccc---cccCchhHHHHHHHHHHHHHHHH
Q 046529 275 AHSAIGAFTLGVIMPK---KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLV---VFSSHKPWMFVLVVLFGFGMSKI 348 (799)
Q Consensus 275 ~~~ilGaf~aGl~lp~---~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~---~l~~~~~~~~~~~ii~~~~~~K~ 348 (799)
+...-|+.++|+++.+ ..|....+-+.-..+...+=+-+|...+|++--.. .+... .|.+.+.-+++.++.-+
T Consensus 410 LG~agG~L~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~-g~~~~~~g~~~t~~~~~ 488 (558)
T PRK04972 410 IGNAAGLLFAGIMLGFLRANHPTFGYIPQGALNMVKEFGLMVFMAGVGLSAGSGINNGLGAV-GGQMLIAGLIVSLVPVV 488 (558)
T ss_pred ccccHHHHHHHHHHHhccccCCCceeeCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHh-hHHHHHHHHHHHHHHHH
Confidence 3456689999999986 34544445555555667788889999999986533 33321 34434333444444445
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHhhhh
Q 046529 349 LITFLVSLLHKIPPKEGLALGLLMNTKG 376 (799)
Q Consensus 349 ~~~~l~~~~~~~~~~e~~~lgl~l~~kG 376 (799)
++.++.-+.+|+++.. .+|.+-..+.
T Consensus 489 ~~~~~~~~~~k~~~~~--~~G~~aG~~t 514 (558)
T PRK04972 489 ICFLFGAYVLRMNRAL--LFGAIMGART 514 (558)
T ss_pred HHHHHHHHHHcCCHHH--HHHHHhCCCC
Confidence 5555555788998874 4455444444
No 152
>PRK12563 sulfate adenylyltransferase subunit 2; Provisional
Probab=52.98 E-value=31 Score=37.56 Aligned_cols=40 Identities=15% Similarity=0.106 Sum_probs=32.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKD 660 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~ 660 (799)
++++.|.||+|+--.|.+|.+.....+..+.++++-+.-+
T Consensus 39 ~~~v~~SgGKDS~VlLhLa~kaf~~~~~~~pvl~VDTG~~ 78 (312)
T PRK12563 39 KPVMLYSIGKDSVVMLHLAMKAFRPTRPPFPLLHVDTTWK 78 (312)
T ss_pred CcEEEecCChHHHHHHHHHHHhhcccCCCeeEEEeCCCCC
Confidence 7789999999999999999988754455678888855433
No 153
>COG2086 FixA Electron transfer flavoprotein, beta subunit [Energy production and conversion]
Probab=51.78 E-value=64 Score=34.26 Aligned_cols=111 Identities=17% Similarity=0.173 Sum_probs=65.7
Q ss_pred EeccCCcchHHHHHHHHHHhh-CCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEE
Q 046529 624 MLFLGGPDDREALAYAWRMAA-HPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYI 702 (799)
Q Consensus 624 v~f~GG~ddreAL~~A~rma~-~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~ 702 (799)
++..=.|.|+-|++.|.|+.+ ..+.++|++.+=++. .++.+.+... .+-++..-.
T Consensus 31 v~~~in~~D~~AvEeAlrLke~~~~~eV~vlt~Gp~~----------------------a~~~lr~aLA--mGaDraili 86 (260)
T COG2086 31 VPLSINPFDLNAVEEALRLKEKGYGGEVTVLTMGPPQ----------------------AEEALREALA--MGADRAILI 86 (260)
T ss_pred CCcccChhhHHHHHHHHHhhccCCCceEEEEEecchh----------------------hHHHHHHHHh--cCCCeEEEE
Confidence 444556899999999999999 799999999983221 1123333222 233333322
Q ss_pred E---EEecChHHHHHHHHhh--cCCCcEEEEcccCCC-CcccccC-CCcCCCCCCCccccchhhh
Q 046529 703 E---NVVNNGEEIVAAIKDL--SDNCDLYIIGRREGA-ESRLTYD-LSLDNLTNFPELGVIGSVL 760 (799)
Q Consensus 703 E---~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~-~s~~~~g-l~~~~w~e~~eLG~iGd~L 760 (799)
+ .--.|...|..+|.+. ..++||++.|+.... .+.++-. +. +|-..|.++.+-++-
T Consensus 87 ~d~~~~~~d~~~ta~~Laa~~~~~~~~LVl~G~qa~D~~t~qvg~~lA--e~Lg~P~~t~v~~i~ 149 (260)
T COG2086 87 TDRAFAGADPLATAKALAAAVKKIGPDLVLTGKQAIDGDTGQVGPLLA--ELLGWPQVTYVSKIE 149 (260)
T ss_pred ecccccCccHHHHHHHHHHHHHhcCCCEEEEecccccCCccchHHHHH--HHhCCceeeeEEEEE
Confidence 2 1122445556666654 556899999997532 2323222 23 566677776665554
No 154
>TIGR03802 Asp_Ala_antiprt aspartate-alanine antiporter. All members of the seed alignment for this model are asparate-alanine anti-transporters (AspT) encoded next to the gene for aspartate 4-decarboxylase (AspD), which converts asparate to alanine, releasing CO2. The exchange of Asp for Ala is electrogenic, so the AspD/AspT system confers a proton-motive force. This transporter contains two copies of the AspT/YidE/YbjL antiporter duplication domain (TIGR01625).
Probab=50.53 E-value=1.7e+02 Score=34.87 Aligned_cols=88 Identities=17% Similarity=0.199 Sum_probs=52.6
Q ss_pred hHHHHHHHHHhhcCCC---CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccc---cccCchhHHHHHHHHHHHHHHHHH
Q 046529 276 HSAIGAFTLGVIMPKK---QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLV---VFSSHKPWMFVLVVLFGFGMSKIL 349 (799)
Q Consensus 276 ~~ilGaf~aGl~lp~~---~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~---~l~~~~~~~~~~~ii~~~~~~K~~ 349 (799)
....|++++|+++..- .|....+-+....+...+.+-+|...+|++.-.. .+... .|.+.++-+++.++.- +
T Consensus 416 g~~~g~l~~gl~~g~~~~~~~~~~~~p~~a~~~l~~~GL~lFla~vG~~aG~~f~~~l~~~-G~~~~~~g~~~~~~~~-~ 493 (562)
T TIGR03802 416 GTGGGALISGLVFGWLRSKHPTFGNIPSSASWLLKDLGLALFIAVVGLSAGPQAVTAIKEM-GLTLFLLGIVVTILPL-I 493 (562)
T ss_pred hhhHHHHHHHHHHHHhcccCCcceecCHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHh-hHHHHHHHHHHHHHHH-H
Confidence 4567899999988753 3333335555555568889999999999987643 33221 2333333333333333 4
Q ss_pred HHHHHH-HhhCCChHHH
Q 046529 350 ITFLVS-LLHKIPPKEG 365 (799)
Q Consensus 350 ~~~l~~-~~~~~~~~e~ 365 (799)
.+++.+ +++|+++...
T Consensus 494 ~~~~~~~~~~~~~~~~~ 510 (562)
T TIGR03802 494 ITMLIGKYVLKYDPALL 510 (562)
T ss_pred HHHHHHHHHhCCCHHHH
Confidence 444445 6889986643
No 155
>COG1883 OadB Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, beta subunit [Energy production and conversion]
Probab=49.39 E-value=4.7 Score=42.50 Aligned_cols=112 Identities=16% Similarity=0.156 Sum_probs=68.6
Q ss_pred hhhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 046529 306 LVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLN 384 (799)
Q Consensus 306 ~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~ 384 (799)
.++++=++.|.-+|..+|++-+...+ +.+. -..+=++ +..+++.+...|+..+|+..+|.+=..-|-.++.+.+
T Consensus 82 ~~~i~PllIFmGvGAmTDFgpllanPktllL----GaAAQ~G-IF~t~~~A~~lgf~~~eAasIgIIGGADGPTaIy~t~ 156 (375)
T COG1883 82 GSGIFPLLIFMGVGAMTDFGPLLANPKTLLL----GAAAQFG-IFATVFGALALGFTPKEAASIGIIGGADGPTAIYLTN 156 (375)
T ss_pred ccCcccHHHHhccchhcccchhhcCcHHHHh----hhHHHhc-hHHHHHHHHHhCCCHhhhhheeeeccCCCCceEEecc
Confidence 46788888999999999998765432 2221 1112222 2345556778899999999999977777766655543
Q ss_pred hhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHhhhhhhh
Q 046529 385 TACNRKDLVDEAFPPTIFALFVMTCVIEPILAATYKATKQ 424 (799)
Q Consensus 385 ~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~ly~~~~~ 424 (799)
..- -.++........-.|+++ -.+-||+.|.+-.+++|
T Consensus 157 ~LA-P~Ll~~iAvAAYSYMALV-PiIQPpimkaLTt~~ER 194 (375)
T COG1883 157 KLA-PELLGAIAVAAYSYMALV-PIIQPPIMKALTTKEER 194 (375)
T ss_pred ccC-HHHHHHHHHHHHHHHHHh-hhcccHHHHHhcCHHHH
Confidence 211 011222222223334455 67789999887665444
No 156
>TIGR02185 Trep_Strep conserved hypothetical integral membrane protein TIGR02185. This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C-terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae R6.
Probab=48.85 E-value=2.9e+02 Score=27.72 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=43.4
Q ss_pred hhHHHHHHHHHhhcCCCCCchhHHHHHHhhh------hhhhhhhHHHHHhhhcc-------c---cccccCchhHHHHHH
Q 046529 275 AHSAIGAFTLGVIMPKKQPITNTFKDKLDDF------LVSSGLPGFFLLTGFRS-------N---LVVFSSHKPWMFVLV 338 (799)
Q Consensus 275 ~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~------~~~l~lPlFF~~~Gl~i-------d---l~~l~~~~~~~~~~~ 338 (799)
...+++++++-++... ....+.....+... ..+-++|+||..-...- + ...+......+...+
T Consensus 85 ~~~ii~gliaeli~~~-g~Yks~~~~~ia~~~~~~~~~~g~~~p~~~~~d~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~ 163 (189)
T TIGR02185 85 ISSIIGGLLADIIAST-GGYKNKRKVTIAYVLFFLLVAMGPILPIWLFKDEYIAFFAARGDSAEYIDQYIKYVSAIWAVI 163 (189)
T ss_pred HHHHHHHHHHHHHHHh-CCcccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHcCCcHHHHHHHHHhcchHHHHH
Confidence 3456677777777764 44443333322211 12345788874332211 1 111111112334555
Q ss_pred HHHHHHHHHHHHHHHHHHhhCC
Q 046529 339 VLFGFGMSKILITFLVSLLHKI 360 (799)
Q Consensus 339 ii~~~~~~K~~~~~l~~~~~~~ 360 (799)
.++..+++=++|+++..+.+|-
T Consensus 164 ~~~~t~v~~~iG~~iG~kllkK 185 (189)
T TIGR02185 164 MIVLTAVAGIAGVLIGKKLLKK 185 (189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 5556667778888888887653
No 157
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=47.17 E-value=3.1e+02 Score=27.47 Aligned_cols=126 Identities=10% Similarity=0.102 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHH--HhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhh
Q 046529 228 ICVVVVRPALSWVFCSAIRGDNNLSDTHISFVLAGVLLCGFITD--GCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDF 305 (799)
Q Consensus 228 ~~~~v~r~~~~~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae--~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~ 305 (799)
+..++..|+.-.+..|.|+. ....+..++..++.....+ ..-...+++++++=++... ....+.-...+...
T Consensus 39 i~ali~g~vyml~~~KV~K~-----G~~~i~~~i~gl~~~~~G~~~~~~~~~iv~gliAElI~~~-g~y~~~~~~~iay~ 112 (186)
T PF09605_consen 39 IAALICGIVYMLMVAKVPKR-----GAFLIMGIIMGLIFFLMGHGWPMLIVCIVGGLIAELILKK-GGYKSKKRNTIAYA 112 (186)
T ss_pred HHHHHHHHHHHHHHHHcCch-----HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHH
Confidence 33445566666777777532 1222222222222222222 2334567788888888864 34444333332211
Q ss_pred -----hhhhhhhHHHHHhhhc---------cc-cccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 046529 306 -----LVSSGLPGFFLLTGFR---------SN-LVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHK 359 (799)
Q Consensus 306 -----~~~l~lPlFF~~~Gl~---------id-l~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 359 (799)
..+-++|++|..=... -+ ...+.+..+.+..+++++..+++=++|+++..+.++
T Consensus 113 vf~~~~~g~~~p~~~~~~~y~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~v~a~lG~~lG~kllk 181 (186)
T PF09605_consen 113 VFSLGYMGPYLPIWFMRDAYLAAMIAKGMGAEYADTMISFFTPWMLIIIIIITFVGALLGALLGKKLLK 181 (186)
T ss_pred HHHHHHHhhHHHHHHhHHHHHHHHHHcCCCHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1267788887654443 11 111111112344666666777788888888877764
No 158
>COG2431 Predicted membrane protein [Function unknown]
Probab=46.35 E-value=4e+02 Score=28.52 Aligned_cols=56 Identities=29% Similarity=0.377 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHHHHHhhccC---hHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046529 88 LETYAYIALLFYLFLIGLDMD---INLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVI 144 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d---~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~ 144 (799)
.+...+..+.+++|.+|.++. ... |+..-+|+.+..++..++-..+-|.+.+.++.
T Consensus 130 ~~~a~~~~L~~LlF~iGi~l~n~g~~~-~~~~Lnk~gl~l~~i~ilssliGG~iaa~~l~ 188 (297)
T COG2431 130 PENASEYLLYLLLFLIGIQLGNSGISL-RQVLLNKRGLILAFITLLSSLIGGLIAAFLLD 188 (297)
T ss_pred chhHHHHHHHHHHHHHHHHhccccchh-hhHHhccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 345677889999999999987 221 12111267777777777777766666666554
No 159
>PRK10660 tilS tRNA(Ile)-lysidine synthetase; Provisional
Probab=46.34 E-value=1.1e+02 Score=35.07 Aligned_cols=57 Identities=19% Similarity=0.247 Sum_probs=42.0
Q ss_pred eEEEeccCCcchHHHHHHHHHHh-hCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhc
Q 046529 621 HLLMLFLGGPDDREALAYAWRMA-AHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKT 693 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~ 693 (799)
+|++.+.||+|+--.|.+..++. ..++.+++++|+...-.. +.+.+.++.+++.+++
T Consensus 17 ~ilvavSGG~DS~~Ll~~l~~~~~~~~~~~l~a~hvnhglr~----------------~s~~~~~~~~~~~~~l 74 (436)
T PRK10660 17 QILVAFSGGLDSTVLLHLLVQWRTENPGVTLRAIHVHHGLSP----------------NADSWVKHCEQVCQQW 74 (436)
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCc----------------chHHHHHHHHHHHHHc
Confidence 89999999999998888888776 456889999999644222 1223456777776654
No 160
>COG3748 Predicted membrane protein [Function unknown]
Probab=46.15 E-value=4e+02 Score=29.05 Aligned_cols=55 Identities=15% Similarity=0.167 Sum_probs=33.2
Q ss_pred CCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHH
Q 046529 292 QPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKI 348 (799)
Q Consensus 292 ~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~ 348 (799)
|++++.-.+|...= +-+-+|..|+.+.-...+.. ....+|.+..++.+.+++.|-
T Consensus 212 P~~gk~akqRS~HN-nylTLPVlF~MlSNHyp~~~-gt~fnWii~alv~l~gV~IRh 266 (407)
T COG3748 212 PKLGKTAKQRSRHN-NYLTLPVLFTMLSNHYPLAF-GTQFNWIIAALVFLMGVLIRH 266 (407)
T ss_pred cchhhhhhhhhhhc-ceehHHHHHHHHhccCcccc-cCchhHHHHHHHHHHHHHHHH
Confidence 34444444443332 56778999998776665442 333478877777777766653
No 161
>COG3180 AbrB Putative ammonia monooxygenase [General function prediction only]
Probab=43.91 E-value=3.6e+02 Score=29.90 Aligned_cols=122 Identities=21% Similarity=0.263 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHHhch--hHHHH-HHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch
Q 046529 255 HISFVLAGVLLCGFITDGCGA--HSAIG-AFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK 331 (799)
Q Consensus 255 ~~~~il~~~l~~~~~ae~~G~--~~ilG-af~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~ 331 (799)
+....+.+.+..+++.+..|+ ..++| +.++|.+..-. ...-.+-..+..+ -.-+.=..+|.++..+.+....
T Consensus 10 ~w~i~l~ls~~~g~l~~~~~vPa~~mlG~~l~a~~v~~~~-~~~l~~P~~l~~~----~q~ilG~~ig~~~t~s~l~~l~ 84 (352)
T COG3180 10 QWFILLLLSLLGGWLLTLLHVPAAWMLGAPLLAGIVAGLR-GLTLPLPRGLFKA----GQVILGIMIGASLTPSVLDTLK 84 (352)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhc-cccccCChHHHHH----HHHHHHHHHhhhcCHHHHHHHH
Confidence 445566666677888888886 34677 55555554421 1110111111111 1122334556666655554322
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHh
Q 046529 332 -PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLN 384 (799)
Q Consensus 332 -~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~ 384 (799)
.|...+++++..++.-++..|+..|+.+.|..+++ +...|-|.-++....
T Consensus 85 ~~w~~~~~v~~~tl~~s~l~g~ll~r~~~~~~~Ta~---~gs~PGgas~m~~iA 135 (352)
T COG3180 85 SNWPIVLVVLLLTLLSSILLGWLLKRFSILPGNTAF---LGSSPGGASAMVSIA 135 (352)
T ss_pred HcccHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhh---HhcCCchHHHHHHHH
Confidence 47777888888888889999999999877766654 345677766666554
No 162
>PRK03818 putative transporter; Validated
Probab=43.44 E-value=2.5e+02 Score=33.30 Aligned_cols=82 Identities=13% Similarity=0.128 Sum_probs=56.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHhhccChHHHHh----cCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Q 046529 84 SVMLLETYAYIALLFYLFLIGLDMDINLISA----TGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFC 159 (799)
Q Consensus 84 ~~~~l~~la~lGli~~lFl~Gle~d~~~l~~----~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l 159 (799)
.......+.++|+.+|+..+|++--...+.. .+ .+...+|+.-.++|.++++.+++++.+ .+ ....+
T Consensus 427 p~~a~~~l~~~GL~lFla~vGl~aG~~f~~~~~~~~G--~~~~~~g~~v~~~~~~~~~~~~~~~~~---~~----~~~~~ 497 (552)
T PRK03818 427 PPSANLALRELGIVLFLAVVGLKSGGDFVDTLVNGEG--LSWIGYGFLITAVPLLIVGILARMLAK---MN----YLTLC 497 (552)
T ss_pred CHHHHHHHHHHhHHHHHHHHHhhhhHHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHc---CC----HHHHH
Confidence 3456778999999999999999988776544 34 556677777788888888888765543 11 22333
Q ss_pred H-HHHhhccHHHHHHH
Q 046529 160 A-VALTATNFQELTQI 174 (799)
Q Consensus 160 ~-~~ls~Ts~pvv~~i 174 (799)
| .+=+.|++|.+...
T Consensus 498 G~~aG~~t~tp~l~~a 513 (552)
T PRK03818 498 GMLAGSMTDPPALAFA 513 (552)
T ss_pred HHHhccCCCcHHHHHH
Confidence 3 44566777776655
No 163
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=42.79 E-value=4.2e+02 Score=27.70 Aligned_cols=40 Identities=10% Similarity=0.046 Sum_probs=20.1
Q ss_pred HhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046529 103 IGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVI 144 (799)
Q Consensus 103 ~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~ 144 (799)
.-+--+.+.+||++ +..+.--+.|.++.++.+..++.+++
T Consensus 80 vPLY~q~~~lk~~~--~~Il~~~~vG~~~~i~s~~~la~~lg 119 (232)
T PRK04288 80 IPLYKKRDVLKKYW--WQILGGIVVGSVCSVLIIYLVAKLIQ 119 (232)
T ss_pred HHHHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 33334455555555 55444444555555555555555554
No 164
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=42.60 E-value=5.4e+02 Score=29.28 Aligned_cols=61 Identities=13% Similarity=0.104 Sum_probs=39.6
Q ss_pred hhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHH-HHH
Q 046529 308 SSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLA-LGL 370 (799)
Q Consensus 308 ~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~-lgl 370 (799)
.|++....+-+=+..|=..+.+ .....+..++.+.++-++.+.+.+.++|++++|++. +.+
T Consensus 97 ~ffIa~LI~GSILgm~RklLik--a~~r~~p~il~g~~~a~~~g~lvG~l~G~~~~~~i~~i~l 158 (414)
T PF03390_consen 97 YFFIAALIVGSILGMNRKLLIK--AFARFIPPILGGVIGAFLLGGLVGMLFGYSFKDAIFYIVL 158 (414)
T ss_pred HHHHHHHHHhhhhhcCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 3444444444444556444443 344456666677778888888899999999999976 444
No 165
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=42.48 E-value=1.7e+02 Score=31.99 Aligned_cols=92 Identities=22% Similarity=0.224 Sum_probs=51.5
Q ss_pred HHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 278 AIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSL 356 (799)
Q Consensus 278 ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~ 356 (799)
++.+.++|...|.-+..+..+. .|.. ..+.+.+.|...|++++.+++.... .|...+......++.=.+.++...+
T Consensus 7 l~~ai~la~~~P~~g~~~~~~~--~~~~-~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~Pll~~~~~~ 83 (313)
T PF13593_consen 7 LLLAILLAYLFPAPGAAGGVIK--PEYV-IKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFPLLGFGLSR 83 (313)
T ss_pred HHHHHHHHHHcCcccccCCccc--hhhh-HHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667788888886433333332 1223 3344677788899999987775432 4555444444555555555555555
Q ss_pred hhCCChHHHHHHHHHH
Q 046529 357 LHKIPPKEGLALGLLM 372 (799)
Q Consensus 357 ~~~~~~~e~~~lgl~l 372 (799)
..+-...+.+..|+..
T Consensus 84 l~~~~~~~~l~~Gl~~ 99 (313)
T PF13593_consen 84 LFPAFLPPELALGLLI 99 (313)
T ss_pred HhhccCCHHHHHHHHH
Confidence 5532223445555543
No 166
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=41.49 E-value=2.1e+02 Score=27.49 Aligned_cols=19 Identities=21% Similarity=0.210 Sum_probs=10.5
Q ss_pred hhHHHHH--hhhccccccccC
Q 046529 311 LPGFFLL--TGFRSNLVVFSS 329 (799)
Q Consensus 311 lPlFF~~--~Gl~idl~~l~~ 329 (799)
+|+||+= +|.-..++.+..
T Consensus 69 m~LfFVPagVGim~~~~ll~~ 89 (141)
T PRK04125 69 IGFLFVPSGISVINSLGVMSQ 89 (141)
T ss_pred HHHHHhhhHhHHHHhHHHHHH
Confidence 5777774 444444555544
No 167
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=41.06 E-value=7.2e+02 Score=30.28 Aligned_cols=97 Identities=11% Similarity=0.142 Sum_probs=58.6
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-+||.-|.||+..-+++++...+++. .+|++--|.+.+..+..+ .+. ++...+--.
T Consensus 561 PQILLlV~nPrss~~Lirf~N~LKKg-----gLYilGHV~~gd~~~~~~--d~l-----------------~~q~~~W~s 616 (945)
T KOG1288|consen 561 PQILLLVSNPRSSCNLIRFCNDLKKG-----GLYILGHVIVGDDFSASM--DEL-----------------QQQQRAWLS 616 (945)
T ss_pred ceEEEEecCCcccchHHHHHHhhccc-----ceEEEEEEEecccccccc--chh-----------------hHHHHHHHH
Confidence 36999999999999999998888643 358888887776543111 110 111112222
Q ss_pred HHHhcCCceeEEEEEEecCCCChhHHHHHHHHh-----cCccEEEEccCC
Q 046529 522 YEKTSNNAVNVHTLTSVSSHESMHEDICCLAED-----KRVAFIIIPYIR 566 (799)
Q Consensus 522 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e-----~~a~lIIlp~h~ 566 (799)
+-.. ..++.=....+|| ++-.+|-++.+- .+.+.+++|||.
T Consensus 617 ~vd~--~~iKAFvelt~sp--sir~Giq~Lir~SGLGgMKPNt~VlgF~d 662 (945)
T KOG1288|consen 617 FVDD--AGIKAFVELTISP--SIRWGIQHLIRLSGLGGMKPNTAVLGFYD 662 (945)
T ss_pred HHHH--hhhhhheeeccCh--hHHHHHHHHhhhcccCCcCCceEEEEeec
Confidence 2221 1122112223444 777888777665 568999999986
No 168
>PRK01658 holin-like protein; Validated
Probab=39.78 E-value=2.7e+02 Score=26.00 Aligned_cols=28 Identities=21% Similarity=0.228 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCh
Q 046529 44 PLFLIQLAYVLFINHLLVAILKPLRQPP 71 (799)
Q Consensus 44 ~~~l~qi~lil~~s~~~~~ll~rl~~P~ 71 (799)
..++.|+.+++.+..+...+.+-+++|-
T Consensus 4 ~~~l~~l~il~~~~~~G~~i~~~l~lpi 31 (122)
T PRK01658 4 VKLLVQIALLYVFALVGTWIQEQLHLPI 31 (122)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3567888888877777777777666553
No 169
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=39.08 E-value=5.4e+02 Score=27.92 Aligned_cols=136 Identities=13% Similarity=-0.017 Sum_probs=78.4
Q ss_pred hHHHHHHHHHhhcCC-CCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Q 046529 276 HSAIGAFTLGVIMPK-KQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLV 354 (799)
Q Consensus 276 ~~ilGaf~aGl~lp~-~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~ 354 (799)
+|.+=|.++|+++.- +.+....+.+-++.+ .....|+-...+|+.++...+.. .+.......++..+.-.+.++..
T Consensus 182 nP~iia~i~Gl~~~~~~i~lP~~l~~~l~~l-g~~~~plaLl~lG~~l~~~~~~~--~~~~~~~~~~~klil~P~i~~~~ 258 (321)
T TIGR00946 182 FPPLWAPLLSVILSLVGFKMPGLILKSISIL-SGATTPMALFSLGLALSPRKIKL--GVRDAILALIVRFLVQPAVMAGI 258 (321)
T ss_pred CCChHHHHHHHHHHHHhhcCcHHHHHHHHHH-HHHHHHHHHHHHHHhhChhhhcc--ChHHHHHHHHHHHHHHHHHHHHH
Confidence 455556666666653 223445666777776 68899999999999998766543 33445555555666666666777
Q ss_pred HHhhCCChHHHHHHHH-HHhhhhhHHHHHHhhhccCCCCCCCchhHHHHHHHHHHHHHHHHHHHh
Q 046529 355 SLLHKIPPKEGLALGL-LMNTKGLLALIVLNTACNRKDLVDEAFPPTIFALFVMTCVIEPILAAT 418 (799)
Q Consensus 355 ~~~~~~~~~e~~~lgl-~l~~kG~v~l~~~~~~~~~~ii~~~~f~~lv~~~lv~t~i~~plv~~l 418 (799)
...++.+.......-+ ...|-+.... ..+.+.|. +++..+..+....+.+.++-|+.-++
T Consensus 259 ~~~~~l~~~~~~~~vl~aa~P~a~~~~---i~A~~y~~-~~~~aa~~v~~sT~ls~~tlp~~~~l 319 (321)
T TIGR00946 259 SKLIGLRGLELSVAILQAALPGGAVAA---VLATEYEV-DVELASTAVTLSTVLSLISLPLFIIL 319 (321)
T ss_pred HHHhCCChHHHHHHHHHHcCChhhHHH---HHHHHhCC-CHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777776544322111 1133333333 33334443 44444444444444466676766443
No 170
>PF02601 Exonuc_VII_L: Exonuclease VII, large subunit; InterPro: IPR020579 Exonuclease VII 3.1.11.6 from EC is composed of two nonidentical subunits; one large subunit and 4 small ones []. Exonuclease VII catalyses exonucleolytic cleavage in either 5'-3' or 3'-5' direction to yield 5'-phosphomononucleotides. The large subunit also contains the OB-fold domains (IPR004365 from INTERPRO) that bind to nucleic acids at the N terminus. This entry represents Exonuclease VII, large subunit, C-terminal. ; GO: 0008855 exodeoxyribonuclease VII activity
Probab=38.73 E-value=53 Score=35.87 Aligned_cols=51 Identities=22% Similarity=0.281 Sum_probs=35.5
Q ss_pred HHHHHHhhhhcCCCCCeEEEEEEe---cChHHHHHHHHhhcC-----CCcEEEEcccCCC
Q 046529 683 DEDIYEFKFKTMNDESISYIENVV---NNGEEIVAAIKDLSD-----NCDLYIIGRREGA 734 (799)
Q Consensus 683 ~~~l~~~~~~~~~~~~v~y~E~~v---~~~~e~~~~i~~~~~-----~~DLviVGr~~~~ 734 (799)
.++++.++.++.. -++.+-...| +...+++++|+.... +||++|++||+|.
T Consensus 29 ~D~~~~~~~r~~~-~~~~~~p~~vQG~~A~~~I~~al~~~~~~~~~~~~Dviii~RGGGs 87 (319)
T PF02601_consen 29 QDFLRTLKRRNPI-VEIILYPASVQGEGAAASIVSALRKANEMGQADDFDVIIIIRGGGS 87 (319)
T ss_pred HHHHHHHHHhCCC-cEEEEEeccccccchHHHHHHHHHHHHhccccccccEEEEecCCCC
Confidence 4577777776543 2355555556 446788889987742 5999999999984
No 171
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=38.35 E-value=68 Score=34.75 Aligned_cols=74 Identities=22% Similarity=0.235 Sum_probs=50.3
Q ss_pred CChhhhhhee-eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 69 QPPIVGQILE-MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 69 ~P~ivg~Ila-l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
+|-++|.++. +.| +-.+.+..-..+-..|+-|-.|-.+|+..+.+.+ -.-+.+++..++++....+....++..
T Consensus 176 lP~iiG~iLGNLD~-~~r~fl~~~~~~lIPF~~f~lGa~inl~~i~~aG--l~GIlLgv~~~~vtg~~~~~~dr~i~~ 250 (314)
T PF03812_consen 176 LPIIIGMILGNLDP-DFRKFLAPGVPILIPFFGFALGAGINLSNIIKAG--LSGILLGVIVVVVTGIPLYLADRLILK 250 (314)
T ss_pred HHHHHHHHHhcCCH-HHHHHHhcCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHHHHHHhHHHHHHHHHHcC
Confidence 4677777777 221 1122222222333456889999999999999999 888888888888777777777766654
No 172
>KOG0573 consensus Asparagine synthase [Amino acid transport and metabolism]
Probab=37.55 E-value=2.2e+02 Score=32.50 Aligned_cols=75 Identities=17% Similarity=0.211 Sum_probs=51.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHh-hCCCeEEEEEEeecC-CCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMA-AHPNVKLTVVRFLPG-KDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDES 698 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvvr~~~~-~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~ 698 (799)
+|||+|.||-|.---..++.+.+ +|+.+.|-=+-|-.+ ... +.+ -.+++....-++|++..+.. ..
T Consensus 252 ~VcVlfSGGvDs~vvA~l~h~~vp~ne~IdLINVaF~n~e~~~---~~~--------~PDRktgr~g~~eL~s~~P~-R~ 319 (520)
T KOG0573|consen 252 NVCVLFSGGVDSTVVAVLAHYVVPENEPIDLINVAFGNPEGSK---EQN--------VPDRKTGRRGLEELQSLYPK-RS 319 (520)
T ss_pred cEEEEecCCchHHHHHHHHHhhcCCCCceeEEEeeccCCCccc---ccC--------CccHHHHHHHHHHHHHhCCc-ce
Confidence 89999999999999999998888 666555555555322 111 111 35678888889999887653 34
Q ss_pred eEEEEEEec
Q 046529 699 ISYIENVVN 707 (799)
Q Consensus 699 v~y~E~~v~ 707 (799)
..+.|.-|.
T Consensus 320 ~nlV~vnV~ 328 (520)
T KOG0573|consen 320 WNLVEVNVT 328 (520)
T ss_pred EEEEeccCC
Confidence 666665553
No 173
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=36.79 E-value=2.5e+02 Score=31.61 Aligned_cols=97 Identities=18% Similarity=0.157 Sum_probs=58.2
Q ss_pred HhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-hHHHHH-HHHHH--hhhhh
Q 046529 302 LDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIP-PKEGLA-LGLLM--NTKGL 377 (799)
Q Consensus 302 l~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~-~~e~~~-lgl~l--~~kG~ 377 (799)
+-++++..++|+-....=++.|+..+... -...+...+++.++-.+++.+..+.++.. -.|... .|.+. -.-|.
T Consensus 52 ~y~~v~~~~vPlai~LlLl~~Dlr~i~~~--g~~~l~~F~~~~~g~viG~~va~~l~~~~l~~~~wk~ag~l~gsyiGGs 129 (378)
T PF05684_consen 52 VYDFVWTYLVPLAIPLLLLSADLRRILRL--GGRLLLAFLIGAVGTVIGAVVAFLLFGGFLGPEGWKIAGMLAGSYIGGS 129 (378)
T ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhcccCch
Confidence 34455677788877777789999887653 23466666677777888888877777654 334443 33322 23355
Q ss_pred HHHHHHhhhccCCCCCCCchhHHHHH
Q 046529 378 LALIVLNTACNRKDLVDEAFPPTIFA 403 (799)
Q Consensus 378 v~l~~~~~~~~~~ii~~~~f~~lv~~ 403 (799)
+..+...-+++ .+++.|+..+.+
T Consensus 130 ~N~~Av~~al~---~~~~~~~a~~aa 152 (378)
T PF05684_consen 130 VNFVAVAEALG---VSDSLFAAALAA 152 (378)
T ss_pred hHHHHHHHHHC---CCHHHHHHHHHH
Confidence 55555554443 245566555443
No 174
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes. Operons that encode arsenic resistance have been found in multicopy plasmids from both Gram-positive and Gram-negative bacteria []. The resistance mechanism is encoded from a single operon, which houses an anion pump. The pump has two polypeptide components: a catalytic subunit (the ArsA protein), which functions as an oxyanion-stimulated ATPase; and an arsenite export component (the ArsB protein), which is associated with the inner membrane []. The ArsA and ArsB proteins are thought to form a membrane complex that functions as an anion-translocating ATPase. The ArsB protein is distinguished by its overall hydrophobic character, in keeping with its role as a membrane-associated channel. Sequence analysis reveals the presence of 13 putative transmembrane (TM) regions.; GO: 0015105 arsenite transmembrane transporter activity, 0016021 integral to membrane
Probab=35.26 E-value=7.3e+02 Score=28.38 Aligned_cols=36 Identities=8% Similarity=0.047 Sum_probs=29.0
Q ss_pred HHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHH
Q 046529 168 FQELTQILTDLRILHLDIGRIALSSALLSDLFTWML 203 (799)
Q Consensus 168 ~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~il 203 (799)
.|++..+.+.+|+.+.+.--.+++++.+.|..+..+
T Consensus 117 TPivla~~~~~~~~~~~~lp~l~a~~~iAntASl~L 152 (423)
T PF02040_consen 117 TPIVLALARRLGLNPKPPLPFLFACAFIANTASLLL 152 (423)
T ss_pred HHHHHHHHHHcCCCcccchHHHHHHHHHhhhhhccc
Confidence 588888888889776655568899999999988765
No 175
>cd01713 PAPS_reductase This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases. A highly modified version of the P loop, the fingerprint peptide of mononucleotide-binding proteins, is present in the active site of the protein, which appears to be a positively charged cleft containing a number of conserved arginine and lysine residues. Although PAPS reductase has no ATPase activity, it shows a striking similarity to the structure of the ATP pyrophosphatase (ATP PPase) domain of GMP synthetase, indicating that both enzyme families have evolved from a common ancestral nucleotide-binding fold. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) . It is also found in NodP nodulation protein P from Rhizobium meliloti which has ATP sulphurylase acti
Probab=34.63 E-value=67 Score=30.67 Aligned_cols=37 Identities=22% Similarity=0.320 Sum_probs=28.0
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
+|++.|.||+|+--.|.++.+...+. -++.++++.+.
T Consensus 1 ~i~v~~SGGkDS~~ll~l~~~~~~~~-~~~~~v~~dtg 37 (173)
T cd01713 1 NVVVSFSGGKDSTVLLHLALKALPEL-KPVPVIFLDTG 37 (173)
T ss_pred CeEEEecCChHHHHHHHHHHHhcccc-cCceEEEeCCC
Confidence 57899999999999999988866542 35667777543
No 176
>PRK01821 hypothetical protein; Provisional
Probab=34.47 E-value=3.2e+02 Score=25.96 Aligned_cols=26 Identities=12% Similarity=-0.016 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCC
Q 046529 45 LFLIQLAYVLFINHLLVAILKPLRQP 70 (799)
Q Consensus 45 ~~l~qi~lil~~s~~~~~ll~rl~~P 70 (799)
.++.|+++++.+..+...+.+-+++|
T Consensus 10 ~~l~~l~ill~~~~~Ge~i~~~l~lp 35 (133)
T PRK01821 10 QYLRAFVLIYACLYAGIFIASLLPIT 35 (133)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56778888887777766666666654
No 177
>PRK12933 secD preprotein translocase subunit SecD; Reviewed
Probab=33.84 E-value=9e+02 Score=29.01 Aligned_cols=55 Identities=13% Similarity=0.044 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-hcCcchhhhhhHHHHHHHHHhhccHHHH-HHHHHhcc
Q 046529 123 SIALAGTLVPMAVGLGAFFLV-IGESQEFITQGGYMFCAVALTATNFQEL-TQILTDLR 179 (799)
Q Consensus 123 ~ia~~~~lip~~~g~~~~~~l-~~~~~~~~~~~~~l~l~~~ls~Ts~pvv-~~iL~elk 179 (799)
.++.+++.+.+++.+++..++ +.....+ ...++.+++-+++=+..++ =++-+|++
T Consensus 466 lva~iAL~~~l~l~l~vmsll~G~tLtLp--gIAGiILtIGmaVDanIVI~ERIrEel~ 522 (604)
T PRK12933 466 WVANVALIANMVCLFGLLALIPGAVLTLP--GIAGLVLTVGMAVDTNVLIFERIKDKLK 522 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCcccHH--HHHHHHHHHHhhccCcEEEehHHHHHHH
Confidence 455556666666666655555 3322222 2344455444554443333 35555554
No 178
>TIGR01109 Na_pump_decarbB sodium ion-translocating decarboxylase, beta subunit. This model describes the beta subunits of sodium pump decarboxylases that include oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, and glutaconyl-CoA decarboxylase. Beta and gammma-subunits are integral membrane proteins, while alpha is membrane bound. Catalytically, the energy released by the decarboxylation reaction is coupled to the extrusion of Na+ ions across the membrane.
Probab=33.25 E-value=6.9e+02 Score=27.47 Aligned_cols=100 Identities=13% Similarity=0.159 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHHHHh------hcCCCCC-CchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHH
Q 046529 227 LICVVVVRPALSWVFCSA------IRGDNNL-SDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFK 299 (799)
Q Consensus 227 ~~~~~v~r~~~~~l~~~~------~~~~~~~-~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~ 299 (799)
.++-.+-+|+++++..+. +.. +++ +...+.+-+....+++++. =.-.+.+|.+.+|-.+.+ ....+++.
T Consensus 160 aLvPiiqPpimklLttkkeR~I~M~~~-r~Vsk~eKi~Fpivv~~i~~ll~--P~a~pLig~Lm~GnllrE-sGv~~rl~ 235 (354)
T TIGR01109 160 ALVPIIQPPIMKALTSEKERKIRMKQL-RTVSKREKILFPIVLLLLVALLI--PKALPLVGMLMFGNLMRE-SGVVERLS 235 (354)
T ss_pred HHHhcccchHHHhhcChHHhccccCCC-CCcCccchhHHHHHHHHHHHHHc--cchHHHHHHHHHHHHHHH-hccHHHHH
Confidence 344445567777664221 111 222 2234555565555555552 234689999999999985 33333333
Q ss_pred HHHhhhhhhhhhhHHHHHhhhccccccccCc
Q 046529 300 DKLDDFLVSSGLPGFFLLTGFRSNLVVFSSH 330 (799)
Q Consensus 300 ~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~ 330 (799)
+..+.-..++.--+.=..+|...+-+.+.+.
T Consensus 236 ~taqn~l~nivTifLGl~vG~~~~A~~fL~~ 266 (354)
T TIGR01109 236 KTASNELLNIVTILLGLSVGAKMRADKFLTP 266 (354)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 3333222222222233466666666655543
No 179
>KOG1965 consensus Sodium/hydrogen exchanger protein [Inorganic ion transport and metabolism]
Probab=33.15 E-value=82 Score=36.98 Aligned_cols=71 Identities=17% Similarity=0.156 Sum_probs=41.4
Q ss_pred hhhhhhHHHHHhhhccccccccCchhHHHHHHH---------HHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhh
Q 046529 307 VSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVV---------LFGFGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGL 377 (799)
Q Consensus 307 ~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~i---------i~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~ 377 (799)
..+++|-...-.|.+++-..+... .+-+..+ .+++...|+.+. .-..++++++|.+.+|.+++.---
T Consensus 102 f~vLLPpiif~sgy~l~k~~fF~n--~~si~~fa~~Gt~IS~~~ig~gv~~~~~--~~~~~~~~f~d~L~fGaliSATDP 177 (575)
T KOG1965|consen 102 FLVLLPPIIFNSGYSLKKKQFFRN--IGSILLFAIFGTFISAVIIGAGVYLLGF--GLLIYDLSFKDCLAFGALISATDP 177 (575)
T ss_pred HHHhhchhhhcccceechhhhhhh--hHHHHHhhhcceeeehhHHhhHHHHHhc--ccccccccHHHHHHHhhHhcccCc
Confidence 466777766778998886665542 2111111 122222333332 234458899999999998876655
Q ss_pred HHHH
Q 046529 378 LALI 381 (799)
Q Consensus 378 v~l~ 381 (799)
|...
T Consensus 178 VtvL 181 (575)
T KOG1965|consen 178 VTVL 181 (575)
T ss_pred hHHH
Confidence 5443
No 180
>TIGR03136 malonate_biotin Na+-transporting malonate decarboxylase, carboxybiotin decarboxylase subunit. Malonate decarboxylase can be a soluble enzyme, or a sodium ion-translocating with additional membrane-bound components. Members of this protein family are integral membrane proteins required to couple decarboxylation to sodium ion export. This family belongs to a broader family, TIGR01109 of sodium ion-translocating decarboxylase beta subunits.
Probab=32.15 E-value=7.6e+02 Score=27.62 Aligned_cols=99 Identities=14% Similarity=0.130 Sum_probs=53.9
Q ss_pred HHHHHHHHHHHHHHHHHh------h-cCCCCC-CchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHH
Q 046529 227 LICVVVVRPALSWVFCSA------I-RGDNNL-SDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTF 298 (799)
Q Consensus 227 ~~~~~v~r~~~~~l~~~~------~-~~~~~~-~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l 298 (799)
.++-.+-+|+++++..+. . +. +++ +...+.+-+..+.+++++. =.-.+.+|.+.+|-.+.+.+ . +++
T Consensus 197 aLVPiiqPpimklLttkkER~I~M~~~~-r~VSk~eKilFpivv~i~~~ll~--P~a~pLig~Lm~GNllrEsG-v-~rL 271 (399)
T TIGR03136 197 SLTYAGYPYLIKLLVPKKYRGLEVEMEF-PDVSQRAKFVFTIVAAMLLCLLL--PVASPLILSFFLGVAIKEAQ-I-EPY 271 (399)
T ss_pred HHHhcccchHHHhhcCHHHHcccCccCC-CCCCccchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHhC-c-HHH
Confidence 344445567777664321 1 11 222 2234556666666666552 23468999999999998533 3 555
Q ss_pred HHHHhhhhhhhhhhHHHHHhhhccccccccCc
Q 046529 299 KDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSH 330 (799)
Q Consensus 299 ~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~ 330 (799)
.+-.+.-..++.--+.=..+|...+-+.+.+.
T Consensus 272 s~taqn~l~nivTifLGl~vG~t~~A~~FL~~ 303 (399)
T TIGR03136 272 QNLLEKTLTYGSTLFLGLVLGVLCEASTLLDP 303 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccHHhhCCh
Confidence 55444333333333334566777776665554
No 181
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=31.48 E-value=1.5e+02 Score=32.12 Aligned_cols=74 Identities=19% Similarity=0.226 Sum_probs=50.0
Q ss_pred CChhhhhhee-eccCCChHHHHHHHHHHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhc
Q 046529 69 QPPIVGQILE-MFPYKSVMLLETYAYIALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIG 145 (799)
Q Consensus 69 ~P~ivg~Ila-l~p~~~~~~l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~ 145 (799)
+|-++|.++. +.| +-.+.+..-...-..|+-|..|-.+|++.+.+.+ -.-+.+|+..++++....+....++..
T Consensus 176 lPlliG~ilGNLD~-~~r~fl~~~~~~lIpFf~FaLGaginl~~i~~aG--l~GIlLGl~v~~vtG~~~~~~dr~~~g 250 (314)
T TIGR00793 176 LPFLVGFALGNLDP-ELRDFFSKAVQTLIPFFAFALGNTIDLGVIIQTG--LLGILLGVSVIILTGIPLILADKFIGG 250 (314)
T ss_pred HHHHHHHHHhcCCH-HHHHHhccCCCeeeehhhhhhcCCCCHHHHHHhC--cchHHHHHHHHHHHhHHHHHHHHHhcC
Confidence 4667777777 222 1111222222233456889999999999999999 788888888888887777777776643
No 182
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=31.17 E-value=5.2e+02 Score=28.34 Aligned_cols=78 Identities=22% Similarity=0.189 Sum_probs=53.8
Q ss_pred hhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHH---hhhhhHHHHHH
Q 046529 308 SSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEGLALGLLM---NTKGLLALIVL 383 (799)
Q Consensus 308 ~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l---~~kG~v~l~~~ 383 (799)
.+++-+.|...|+++...++.... .|...+..++.-++.=.+.++..++.+++| +.+..|+++ +|-|..+.++.
T Consensus 41 ~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~--~~l~~Gl~ll~~~Pggv~S~~~t 118 (319)
T COG0385 41 PIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLP--PELAVGLLLLGCCPGGVASNAMT 118 (319)
T ss_pred HHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCC--HHHHHhHHheeeCCCchhHHHHH
Confidence 455666777788888776654322 566677777777788888888888888755 556677655 56677775555
Q ss_pred hhhc
Q 046529 384 NTAC 387 (799)
Q Consensus 384 ~~~~ 387 (799)
..+.
T Consensus 119 ~lAk 122 (319)
T COG0385 119 YLAK 122 (319)
T ss_pred HHhc
Confidence 5554
No 183
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=29.19 E-value=1.5e+02 Score=28.00 Aligned_cols=60 Identities=20% Similarity=0.187 Sum_probs=44.8
Q ss_pred CChhHHHHHHHHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccC-CCceEEEEcCCCC
Q 046529 542 ESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNT-PCSVCIFVDRGLG 604 (799)
Q Consensus 542 ~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~A-pCsVgIlvdRg~~ 604 (799)
....+.+.+++++.+++.|++|...+. ||...... ..+.+.+++-++. +++| .++|..++
T Consensus 37 ~~~~~~l~~li~~~~i~~iVvGlP~~~--~G~~~~~~~~v~~f~~~L~~~~~~ipV-~~~DEr~T 98 (135)
T PF03652_consen 37 EKDIEELKKLIEEYQIDGIVVGLPLNM--DGSESEQARRVRKFAEELKKRFPGIPV-ILVDERLT 98 (135)
T ss_dssp CCCHHHHHHHHHHCCECEEEEEEEBBC--TSSC-CCHHHHHHHHHHHHHHH-TSEE-EEEECSCS
T ss_pred chHHHHHHHHHHHhCCCEEEEeCCccc--CCCccHHHHHHHHHHHHHHHhcCCCcE-EEECCChh
Confidence 578899999999999999999986543 45433222 5677777887776 8998 67777544
No 184
>TIGR02057 PAPS_reductase phosphoadenosine phosphosulfate reductase, thioredoxin dependent. Requiring thioredoxin as an electron donor, phosphoadenosine phosphosulfate reductase catalyzes the reduction of 3'-phosphoadenylylsulfate (PAPS) to sulfite and phospho-adenosine-phosphate (PAP). Found in enterobacteria, cyanobacteria, and yeast, PAPS reductase is related to a group of plant (TIGR00424) and bacterial (TIGR02055) enzymes preferring 5'-adenylylsulfate (APS) over PAPS as a substrate for reduction to sulfite.
Probab=29.13 E-value=3.6e+02 Score=27.90 Aligned_cols=38 Identities=13% Similarity=-0.032 Sum_probs=29.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDP 661 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~ 661 (799)
++++.|.||+|+--.|.++.+.. +| .+.|+.+-+....
T Consensus 27 ~~~~s~S~Gkds~VlL~l~~~~~-~~--~i~vv~vDTg~~f 64 (226)
T TIGR02057 27 GLVQTSAFGIQALVTLHLLSSIS-EP--MIPVIFIDTLYHF 64 (226)
T ss_pred CEEEEecCCHHHHHHHHHHHHhh-CC--CCCEEEEeCCCCC
Confidence 79999999999999999999976 34 3667777554443
No 185
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=28.83 E-value=6.8e+02 Score=26.02 Aligned_cols=38 Identities=13% Similarity=0.141 Sum_probs=18.0
Q ss_pred hccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046529 105 LDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVI 144 (799)
Q Consensus 105 le~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~ 144 (799)
+--+.+.+||++ +..+..-..+.++.++.+..++.+++
T Consensus 76 LY~~~~~lk~~~--~~Il~~~~~G~~~~~~s~~~la~~lg 113 (226)
T TIGR00659 76 LYKQLPQIKKYW--KEIILNVAVGSVIAIISGTLLALLLG 113 (226)
T ss_pred HHHhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 333445555555 44444444444444444444444443
No 186
>PF01507 PAPS_reduct: Phosphoadenosine phosphosulfate reductase family; InterPro: IPR002500 This domain is found in phosphoadenosine phosphosulphate (PAPS) reductase enzymes or PAPS sulphotransferase. PAPS reductase is part of the adenine nucleotide alpha hydrolases superfamily also including N type ATP PPases and ATP sulphurylases []. The enzyme uses thioredoxin as an electron donor for the reduction of PAPS to phospho-adenosine-phosphate (PAP) [, ]. It is also found in NodP nodulation protein P from Rhizobium meliloti (Sinorhizobium meliloti) which has ATP sulphurylase activity (sulphate adenylate transferase) [].; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 2GOY_C 3G5A_C 3G6K_D 3G59_A 3FWK_A 2WSI_A 2OQ2_B 1SUR_A 2O8V_A 1ZUN_A.
Probab=27.62 E-value=1.2e+02 Score=29.36 Aligned_cols=34 Identities=26% Similarity=0.345 Sum_probs=25.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
++++.|.||+|+.-.|.++.+...+- .++++-+.
T Consensus 1 ~i~vs~SGGKDS~v~l~l~~~~~~~~----~vv~~dtg 34 (174)
T PF01507_consen 1 NIVVSFSGGKDSTVMLHLAREAGRKV----PVVFIDTG 34 (174)
T ss_dssp SEEEE--SSHHHHHHHHHHHHHHTTC----EEEEEE-S
T ss_pred CeEEEecCCHHHHHHHHHHHHhcCCC----cEEEEecC
Confidence 57899999999999999999998874 56666443
No 187
>KOG2575 consensus Glucosyltransferase - Alg6p [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=27.50 E-value=9.5e+02 Score=27.27 Aligned_cols=144 Identities=14% Similarity=0.113 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhchhHHHHHHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCchhHHHHHHHHHH
Q 046529 263 VLLCGFITDGCGAHSAIGAFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHKPWMFVLVVLFG 342 (799)
Q Consensus 263 ~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~~~~~~~~ii~~ 342 (799)
-+..+.++..+-=..++|++.+-+++.. +..| --...|+|+...| +..-..+.+. ..-++.+.+
T Consensus 199 Gl~~~ai~~ll~~~~~~as~~F~LAlny---------KQMe---LY~A~pfF~fLLg-~c~k~k~~~~---f~ri~~ia~ 262 (510)
T KOG2575|consen 199 GLTLYAIAALLKNFYVLASVLFVLALNY---------KQME---LYHALPFFAFLLG-SCLKPKLFNS---FARIIKIAL 262 (510)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhH---------HHHH---HHhchHHHHHHHH-HHhcccchHH---HHHHHHHHH
Confidence 3445556666666778999999998874 1111 2345688888888 5554444321 223444555
Q ss_pred HHHHHHHHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHHHhhhccCCC-------CCCCchhHHHHHHHHHHHH--HHH
Q 046529 343 FGMSKILITFLVSLLHKIPPKEGLALGLLMNTKGLLALIVLNTACNRKD-------LVDEAFPPTIFALFVMTCV--IEP 413 (799)
Q Consensus 343 ~~~~K~~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~~~~~~~~~i-------i~~~~f~~lv~~~lv~t~i--~~p 413 (799)
++++-++..+++-...+-...+-+- =+.=-.||..|=-++|++-..++ ...+.... +++..|.+ .|.
T Consensus 263 ~Vv~TF~iiw~P~~~~~~~~~qvl~-RlFPf~RGlfEDKVANfWCt~n~~~K~k~~ft~q~~~~---iSl~~Tli~~LPs 338 (510)
T KOG2575|consen 263 AVVGTFVIIWLPFLLSGDTALQVLH-RLFPFARGLFEDKVANFWCTFNVFLKIKELFTQQQLQV---ISLAATLIGSLPS 338 (510)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHH-HhCchhcchhhhhhhhhhhhhhhhhhhhhhhhHHHHHH---HHHHHHHHHHhHH
Confidence 5667788888887776644443322 22235789999999998865442 22233222 23333333 455
Q ss_pred HHHHhhhhhhhhh
Q 046529 414 ILAATYKATKQFM 426 (799)
Q Consensus 414 lv~~ly~~~~~~~ 426 (799)
.+..+.+|+++-.
T Consensus 339 ~v~l~L~P~~~~f 351 (510)
T KOG2575|consen 339 MVVLFLRPTNKGF 351 (510)
T ss_pred HHHHhhcccccch
Confidence 6666677777643
No 188
>COG1570 XseA Exonuclease VII, large subunit [DNA replication, recombination, and repair]
Probab=27.27 E-value=1e+02 Score=35.19 Aligned_cols=49 Identities=29% Similarity=0.409 Sum_probs=33.7
Q ss_pred HHHHHhhhhcCCCCCeEEEEEEe---cChHHHHHHHHhh--cCCCcEEEEcccCC
Q 046529 684 EDIYEFKFKTMNDESISYIENVV---NNGEEIVAAIKDL--SDNCDLYIIGRREG 733 (799)
Q Consensus 684 ~~l~~~~~~~~~~~~v~y~E~~v---~~~~e~~~~i~~~--~~~~DLviVGr~~~ 733 (799)
+.+...+.+...-+-+.| ...| +-+.|++.+|+.. .+++|.+||||++|
T Consensus 151 DIl~~~~rR~P~~~viv~-pt~VQG~~A~~eIv~aI~~an~~~~~DvlIVaRGGG 204 (440)
T COG1570 151 DILHTLSRRFPSVEVIVY-PTLVQGEGAAEEIVEAIERANQRGDVDVLIVARGGG 204 (440)
T ss_pred HHHHHHHhhCCCCeEEEE-eccccCCCcHHHHHHHHHHhhccCCCCEEEEecCcc
Confidence 467777777654333333 3344 3358899999976 34499999999987
No 189
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=26.92 E-value=1.1e+02 Score=33.98 Aligned_cols=67 Identities=21% Similarity=0.184 Sum_probs=50.8
Q ss_pred CchhHHHHHHhhhhhhhhhhHH-HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhhCCChHHH
Q 046529 293 PITNTFKDKLDDFLVSSGLPGF-FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLHKIPPKEG 365 (799)
Q Consensus 293 ~~~~~l~~kl~~~~~~l~lPlF-F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~~~~~~e~ 365 (799)
+.++++.+++ +-.+|.|.. |.-.|=.+.+..+.+ ||++-+.+++.+..-.+.+|+.+++++-|.+..
T Consensus 40 ~dark~ln~L---vf~lFtPcLiFs~La~svtl~~ii~---~wfiPVnv~Lt~~ig~liG~lv~~I~rppp~~~ 107 (408)
T KOG2722|consen 40 RDARKLLNKL---VFYLFTPCLIFSKLAQSVTLEKIIQ---WWFIPVNVGLTFIIGSLIGWLVVKILRPPPQLR 107 (408)
T ss_pred HHHHHHhhhe---eeeeecHHHHHHHHhhhccHHHHHH---HHhhHHHHHHHHHHHHHHHHHHhheecCChhhc
Confidence 4455555554 457889977 788888888887764 677777777788888888899999999877664
No 190
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=26.60 E-value=7.2e+02 Score=25.60 Aligned_cols=35 Identities=17% Similarity=0.094 Sum_probs=18.6
Q ss_pred ChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHh
Q 046529 108 DINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVI 144 (799)
Q Consensus 108 d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~ 144 (799)
+.+.+|+++ +..+.--..+.++.++.+..++++++
T Consensus 69 ~~~~l~~~~--~~il~~~~~g~~~~~~~~~~l~~~lg 103 (215)
T PF04172_consen 69 QRRLLKKNW--IPILVGVLVGSLVSIFSAVLLARLLG 103 (215)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 455566665 55555445555555555555555554
No 191
>COG0037 MesJ tRNA(Ile)-lysidine synthase MesJ [Cell cycle control, cell division, chromosome partitioning]
Probab=26.52 E-value=85 Score=33.61 Aligned_cols=36 Identities=19% Similarity=0.317 Sum_probs=33.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
+|++.+.||+|+--+|.+..++.++ ..+.+++|...
T Consensus 23 ~ilVavSGGkDS~~ll~~L~~l~~~--~~~~a~~Vd~~ 58 (298)
T COG0037 23 KILVAVSGGKDSLALLHLLKELGRR--IEVEAVHVDHG 58 (298)
T ss_pred eEEEEeCCChHHHHHHHHHHHhccC--ceEEEEEecCC
Confidence 9999999999999999999999988 99999999654
No 192
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=26.41 E-value=4.5e+02 Score=25.77 Aligned_cols=85 Identities=19% Similarity=0.214 Sum_probs=54.5
Q ss_pred eccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEEE
Q 046529 625 LFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIEN 704 (799)
Q Consensus 625 ~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E~ 704 (799)
+..||. ..-...+|+.|+++...++-++.=.+ . .+..+++.+++++.. ..+|.|...
T Consensus 4 litGG~-gglg~~la~~La~~~~~~~il~~r~~---~----------------~~~~~~~~i~~l~~~---g~~v~~~~~ 60 (181)
T PF08659_consen 4 LITGGL-GGLGQSLARWLAERGARRLILLGRSG---A----------------PSAEAEAAIRELESA---GARVEYVQC 60 (181)
T ss_dssp EEETTT-SHHHHHHHHHHHHTT-SEEEEEESSG---G----------------GSTTHHHHHHHHHHT---T-EEEEEE-
T ss_pred EEECCc-cHHHHHHHHHHHHcCCCEEEEeccCC---C----------------ccHHHHHHHHHHHhC---CCceeeecc
Confidence 345654 66899999999999988877665321 1 112244678888764 357999988
Q ss_pred EecChHHHHHHHHhhcCCC---cEEEEcccC
Q 046529 705 VVNNGEEIVAAIKDLSDNC---DLYIIGRRE 732 (799)
Q Consensus 705 ~v~~~~e~~~~i~~~~~~~---DLviVGr~~ 732 (799)
-+.|.+++.+++.+...++ |-||-..+.
T Consensus 61 Dv~d~~~v~~~~~~~~~~~~~i~gVih~ag~ 91 (181)
T PF08659_consen 61 DVTDPEAVAAALAQLRQRFGPIDGVIHAAGV 91 (181)
T ss_dssp -TTSHHHHHHHHHTSHTTSS-EEEEEE----
T ss_pred CccCHHHHHHHHHHHHhccCCcceeeeeeee
Confidence 8999999999998876544 556666654
No 193
>cd01985 ETF The electron transfer flavoprotein (ETF) serves as a specific electron acceptor for various mitochondrial dehydrogenases. ETF transfers electrons to the main respiratory chain via ETF-ubiquinone oxidoreductase. ETF is an heterodimer that consists of an alpha and a beta subunit which binds one molecule of FAD per dimer . A similar system also exists in some bacteria. The homologous pair of proteins (FixA/FixB) are essential for nitrogen fixation. The alpha subunit of ETF is structurally related to the bacterial nitrogen fixation protein fixB which could play a role in a redox process and feed electrons to ferredoxin. The beta subunit protein is distantly related to and forms a heterodimer with the alpha subunit.
Probab=26.32 E-value=3.9e+02 Score=26.25 Aligned_cols=26 Identities=27% Similarity=0.275 Sum_probs=20.5
Q ss_pred CcchHHHHHHHHHHhhCCCeEEEEEEe
Q 046529 629 GPDDREALAYAWRMAAHPNVKLTVVRF 655 (799)
Q Consensus 629 G~ddreAL~~A~rma~~~~v~ltvvr~ 655 (799)
.+.|.|+++.|++|++ .+.+++++-+
T Consensus 18 ~~~~~e~l~~A~~l~~-~~~~v~~v~~ 43 (181)
T cd01985 18 NPLDLEAVEAALRLKE-YGGEVTALVI 43 (181)
T ss_pred CHhhHHHHHHHHHHhh-cCCeEEEEEE
Confidence 4778999999999987 4556766665
No 194
>KOG1650 consensus Predicted K+/H+-antiporter [Inorganic ion transport and metabolism]
Probab=26.31 E-value=1.3e+03 Score=28.58 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhcc
Q 046529 94 IALLFYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATN 167 (799)
Q Consensus 94 lGli~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts 167 (799)
+-+-++....|++.|...+.+ + .............-++.+.+.+.+...+ +..++.+|..++.=.
T Consensus 314 ~llPl~~~~~G~k~di~~i~~-~--~~~~~~i~~~~~~K~l~t~~~sl~~k~p------~~~~l~l~~lm~~kg 378 (769)
T KOG1650|consen 314 LLLPLYFAISGLKTDISRINK-W--GALIRTILIFGAVKLLSTLGTSLYCKLP------LRDSLALGLLMSTKG 378 (769)
T ss_pred HHHHHHHHhhccceeHHHHHH-H--HHHHHHHHHHHHHHHHHHHHHHHHhcCc------hhHHHHHHHHHHhhh
Confidence 345567778899999999987 4 3333343444444555555555544322 336677776666543
No 195
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=26.14 E-value=6.3e+02 Score=27.72 Aligned_cols=70 Identities=11% Similarity=0.081 Sum_probs=38.6
Q ss_pred HHHhh--hccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhh-CCChHHHHHHHHHH---hhhhhHHHHHHhhh
Q 046529 315 FLLTG--FRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLH-KIPPKEGLALGLLM---NTKGLLALIVLNTA 386 (799)
Q Consensus 315 F~~~G--l~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~-~~~~~e~~~lgl~l---~~kG~v~l~~~~~~ 386 (799)
|...| ++++++++.+.. .+....+..+.-++...+.++..++.+ +.+.. +.+|+.+ +|-|..+.+...++
T Consensus 51 ~mmf~mgl~L~~~df~~~~~~pk~~~~~~~~qfvi~Plla~~l~~l~~~~~p~--l~~GliLv~~~Pgg~~S~v~T~lA 127 (328)
T TIGR00832 51 LMMYPPLAKVDYSALGDVFKDPKGLILSLFINWIIGPFLMFLLAWLFLRDLFE--YIAGLILLGLARCIAMVFVWNQLA 127 (328)
T ss_pred HHHHHhhhcCCHHHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH--HHHHHHHHHhcchHHHHHHHHHHc
Confidence 44444 566555543321 344455666666667777777777754 66533 6666544 45555444444444
No 196
>KOG2563 consensus Permease of the major facilitator superfamily [General function prediction only]
Probab=25.55 E-value=1.1e+03 Score=27.34 Aligned_cols=26 Identities=31% Similarity=0.446 Sum_probs=17.9
Q ss_pred CChHHHHHHHHHHhhhhhHHHHHHhhh
Q 046529 360 IPPKEGLALGLLMNTKGLLALIVLNTA 386 (799)
Q Consensus 360 ~~~~e~~~lgl~l~~kG~v~l~~~~~~ 386 (799)
+|..|+..-|+ ++.-|-+-.+.....
T Consensus 389 yPv~E~tSsGl-l~~~gq~f~~~~~~~ 414 (480)
T KOG2563|consen 389 YPVAEGTSSGL-LNLSGQIFGVILVFI 414 (480)
T ss_pred cccCCccccee-EEeehhHHHHHHHHH
Confidence 48889998888 677775555554443
No 197
>COG1380 Putative effector of murein hydrolase LrgA [General function prediction only]
Probab=25.15 E-value=4.4e+02 Score=24.84 Aligned_cols=29 Identities=31% Similarity=0.116 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCCCh
Q 046529 43 APLFLIQLAYVLFINHLLVAILKPLRQPP 71 (799)
Q Consensus 43 l~~~l~qi~lil~~s~~~~~ll~rl~~P~ 71 (799)
...++.|+.+++.+..+..++.+-+++|-
T Consensus 4 ~~~~~~q~~ii~~~~~~G~~i~~~l~lpl 32 (128)
T COG1380 4 VMQILRQLAIILGFLFLGEWIASLLHLPL 32 (128)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45788999999888888888877777663
No 198
>PRK05812 secD preprotein translocase subunit SecD; Reviewed
Probab=24.74 E-value=9.3e+02 Score=28.20 Aligned_cols=55 Identities=13% Similarity=0.041 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhhccHH-HHHHHHHhcc
Q 046529 123 SIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTATNFQ-ELTQILTDLR 179 (799)
Q Consensus 123 ~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~p-vv~~iL~elk 179 (799)
.++..++.+.+++.+++..+++.....+ ...++.+.+-+++-+.- +.-++-++++
T Consensus 359 lia~iaL~~~v~~~l~~~~l~g~~l~l~--siaGlil~iG~~VD~~IVI~ErIreel~ 414 (498)
T PRK05812 359 LIANIALVANLVLILAVLSLLGATLTLP--GIAGIVLTIGMAVDANVLIFERIREELR 414 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCchHH--HHHHHHHhheeEEeceEEEeHHHHHHHH
Confidence 3445555555555666555565432222 22344444444443333 3445545554
No 199
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=24.51 E-value=1e+03 Score=26.50 Aligned_cols=50 Identities=14% Similarity=0.221 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHhhC--------C-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 194 LLSDLFTWMLLLACILVSN--------P-SQYYEVLSTVGFILICVVVVRPALSWVFCS 243 (799)
Q Consensus 194 ~v~D~~~~ill~~~~~~~~--------~-~~~~~~~~~~~~~~~~~~v~r~~~~~l~~~ 243 (799)
.+++...|+.++.+....+ . ...|..+....+.+.++++.+.+..++...
T Consensus 262 f~~~~v~~~~~a~l~~~~G~iid~~l~~~~~~~~~i~~~~~~~a~~~v~~~~~~~~l~~ 320 (344)
T PF04123_consen 262 FLYGSVPWLALAALIASLGKIIDEYLRRDFRLWRYINAPFFVIAIGLVLYGFSAYFLSI 320 (344)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6777778877776665432 1 334655666667777778888888887665
No 200
>COG2985 Predicted permease [General function prediction only]
Probab=24.05 E-value=2.8e+02 Score=32.06 Aligned_cols=97 Identities=22% Similarity=0.217 Sum_probs=61.1
Q ss_pred Chhhhhhee----ecc---CCChHHHHHHHHHHHHHHHHHHhhccChHH---HHhcCCCchhhHHHHHHHHHHHHHHHHH
Q 046529 70 PPIVGQILE----MFP---YKSVMLLETYAYIALLFYLFLIGLDMDINL---ISATGMTNKVVSIALAGTLVPMAVGLGA 139 (799)
Q Consensus 70 P~ivg~Ila----l~p---~~~~~~l~~la~lGli~~lFl~Gle~d~~~---l~~~~~~~~~~~ia~~~~lip~~~g~~~ 139 (799)
|-+++.|++ .+| .-.......+.++|+.+||--+|++---+. +-..+ -..+..|..-.++|.+.++.+
T Consensus 401 pLivaLiLG~ig~iGpl~w~mP~~An~~lrelGl~lFLA~VGl~aG~~f~~tL~~~G--l~~ig~g~lit~vp~i~~~ll 478 (544)
T COG2985 401 PLIVALILGFIGAIGPLTWFMPPGALLALRELGLALFLAGVGLSAGSGFVNTLTGSG--LQIIGYGALVTLVPVIIVFLL 478 (544)
T ss_pred HHHHHHHHHHhcccCceEEEcChhHHHHHHHHHHHHHHHhhccccccchHhhhcccc--hhhhhHHHHHHHHHHHHHHHH
Confidence 455666665 233 123467888999999988777777654332 33344 455666677777888888888
Q ss_pred HHHHhcCcchhhhhhHHHHHHHHHhhccHHHHHHH
Q 046529 140 FFLVIGESQEFITQGGYMFCAVALTATNFQELTQI 174 (799)
Q Consensus 140 ~~~l~~~~~~~~~~~~~l~l~~~ls~Ts~pvv~~i 174 (799)
+.++.+. +| ..++=+++=+.|++|.+.-.
T Consensus 479 g~~v~km-n~-----~~l~G~laGs~T~ppaLa~a 507 (544)
T COG2985 479 GRYVLKM-NW-----LLLCGALAGSMTDPPALAFA 507 (544)
T ss_pred HHHHHhc-cH-----HHHhhHHhcCCCChHHHHHH
Confidence 8888751 12 22333345577888865544
No 201
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=23.92 E-value=2.1e+02 Score=32.05 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=28.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
++++.+.||.|+--|+.++.+- +.++..++|..+
T Consensus 174 kvlvllSGGiDS~vaa~ll~kr----G~~V~av~~~~~ 207 (371)
T TIGR00342 174 KVLALLSGGIDSPVAAFMMMKR----GCRVVAVHFFNE 207 (371)
T ss_pred eEEEEecCCchHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 9999999999999999888552 678999999744
No 202
>cd01995 ExsB ExsB is a transcription regulator related protein. It is a subfamily of a Adenosine nucleotide binding superfamily of proteins. This protein family is represented by a single member in nearly every completed large ( 1000 genes) prokaryotic genome. In Rhizobium meliloti, a species in which the exo genes make succinoglycan, a symbiotically important exopolysaccharide, exsB is located nearby and affects succinoglycan levels, probably through polar effects on exsA expression or the same polycistronic mRNA. In Arthrobacter viscosus, the homologous gene is designated ALU1 and is associated with an aluminum tolerance phenotype. The function is unknown
Probab=23.03 E-value=4e+02 Score=25.69 Aligned_cols=32 Identities=25% Similarity=0.416 Sum_probs=24.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEee
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFL 656 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~ 656 (799)
++++.|.||.|+-.++.++.+. +-.+..+++.
T Consensus 1 kvlv~~SGG~DS~~~~~~~~~~----~~~v~~~~~~ 32 (169)
T cd01995 1 KAVVLLSGGLDSTTCLAWAKKE----GYEVHALSFD 32 (169)
T ss_pred CEEEEecCcHHHHHHHHHHHHc----CCcEEEEEEE
Confidence 5789999999999999888763 3346666664
No 203
>KOG4050 consensus Glutamate transporter EAAC1-interacting protein GTRAP3-18 [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=22.69 E-value=2.7e+02 Score=27.10 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=8.4
Q ss_pred chhHHHHHHhhh
Q 046529 294 ITNTFKDKLDDF 305 (799)
Q Consensus 294 ~~~~l~~kl~~~ 305 (799)
...++++|+|.+
T Consensus 155 ikNkleN~iEsi 166 (188)
T KOG4050|consen 155 IKNKLENKIESI 166 (188)
T ss_pred HHHHHHHHHhhc
Confidence 456777777776
No 204
>COG0175 CysH 3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase and related enzymes [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=22.56 E-value=3e+02 Score=29.16 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=25.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
.+++.|.||+|+-..|.+|.+.... +.|+++-+.
T Consensus 41 ~~~~~~S~Gkds~V~l~L~~k~~~~----~~vif~DTg 74 (261)
T COG0175 41 PVVVSFSGGKDSTVLLHLAAKAFPD----FPVIFLDTG 74 (261)
T ss_pred CeEEEecCchhHHHHHHHHHHhcCC----CcEEEEeCC
Confidence 5678888888888888888777766 666666544
No 205
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=22.25 E-value=1.5e+02 Score=27.88 Aligned_cols=36 Identities=19% Similarity=0.175 Sum_probs=27.0
Q ss_pred EEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCc
Q 046529 533 HTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPL 568 (799)
Q Consensus 533 ~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~ 568 (799)
.-.-++-|...||..|.++|++-++|++|-|+....
T Consensus 72 ~lIYSiRPP~El~~~il~lA~~v~adlii~pL~~e~ 107 (127)
T PF03686_consen 72 DLIYSIRPPPELQPPILELAKKVGADLIIRPLGGES 107 (127)
T ss_dssp EEEEEES--TTSHHHHHHHHHHHT-EEEEE-BTTB-
T ss_pred cEEEEeCCChHHhHHHHHHHHHhCCCEEEECCCCCC
Confidence 345667788999999999999999999999997654
No 206
>PF13194 DUF4010: Domain of unknown function (DUF4010)
Probab=22.24 E-value=8.6e+02 Score=24.91 Aligned_cols=27 Identities=19% Similarity=0.021 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHhchhHHH-HHHHHHhh
Q 046529 261 AGVLLCGFITDGCGAHSAI-GAFTLGVI 287 (799)
Q Consensus 261 ~~~l~~~~~ae~~G~~~il-Gaf~aGl~ 287 (799)
++.++..+..+++|-.++. .+++.|++
T Consensus 137 ~i~~~~~~~~~~~G~~Gl~~~a~isGl~ 164 (211)
T PF13194_consen 137 VILLLSRAAQRWFGDSGLYALAAISGLA 164 (211)
T ss_pred HHHHHHHHHHHHHChhhHHHHHHHHHhh
Confidence 3445666777889877754 67888874
No 207
>cd01712 ThiI ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway. It belongs to the Adenosine Nucleotide Hydrolysis suoerfamily and predicted to bind to Adenosine nucleotide.
Probab=22.11 E-value=3.6e+02 Score=26.38 Aligned_cols=34 Identities=24% Similarity=0.354 Sum_probs=28.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
++++.|.||.|+--++.++.+. +.+++.++|...
T Consensus 1 ~vlv~~SGG~DS~~la~ll~~~----g~~v~av~~d~g 34 (177)
T cd01712 1 KALALLSGGIDSPVAAWLLMKR----GIEVDALHFNSG 34 (177)
T ss_pred CEEEEecCChhHHHHHHHHHHc----CCeEEEEEEeCC
Confidence 4789999999999999888773 678888888644
No 208
>PRK09765 PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional
Probab=21.77 E-value=1.5e+03 Score=27.45 Aligned_cols=39 Identities=18% Similarity=0.049 Sum_probs=21.2
Q ss_pred HHHHHHHHhhCCChHHHHHHHHHHhhhhhHHHHH-Hhhhc
Q 046529 349 LITFLVSLLHKIPPKEGLALGLLMNTKGLLALIV-LNTAC 387 (799)
Q Consensus 349 ~~~~l~~~~~~~~~~e~~~lgl~l~~kG~v~l~~-~~~~~ 387 (799)
+++++-.+.+.-..|+...-++++..-|+.|=++ +....
T Consensus 511 la~~l~~k~f~~~~k~~~~~a~i~g~~gITEpaIPfgv~~ 550 (631)
T PRK09765 511 ASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIED 550 (631)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhcCcccHHHHHhc
Confidence 3333333333334455556666677777777666 55444
No 209
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=21.08 E-value=8.1e+02 Score=24.17 Aligned_cols=87 Identities=21% Similarity=0.286 Sum_probs=50.5
Q ss_pred hhHHHHHHHHHhhcCCCC---CchhHHHHHHhhhhhhhhhhHHHHHhhhccccc---cccCchhHHHHHHHHHHHHHHHH
Q 046529 275 AHSAIGAFTLGVIMPKKQ---PITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLV---VFSSHKPWMFVLVVLFGFGMSKI 348 (799)
Q Consensus 275 ~~~ilGaf~aGl~lp~~~---~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~---~l~~~~~~~~~~~ii~~~~~~K~ 348 (799)
+...-|+++.|+++..-. |.. +......+..++.+-+|...+|++.-.. .+.+. .+...+.-+++. +.-.
T Consensus 23 LG~a~G~L~vgL~~G~~~~~~~~~--~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~-G~~~~~~~~~i~-~~~~ 98 (169)
T PF06826_consen 23 LGAAGGVLFVGLILGALGRTGPIF--LPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRG-GLKLLLLGVIIT-LVPL 98 (169)
T ss_pred ccccHHHHHHHHHHHHhhhccCCC--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHH-HHHH
Confidence 334456667777666421 222 4455556668889999999999988643 33322 233333333333 3445
Q ss_pred HHHHHHHH-hhCCChHHH
Q 046529 349 LITFLVSL-LHKIPPKEG 365 (799)
Q Consensus 349 ~~~~l~~~-~~~~~~~e~ 365 (799)
+.++..++ ++|+++...
T Consensus 99 ~~~~~~~~~~~~l~~~~~ 116 (169)
T PF06826_consen 99 LIALVIGRYLFKLNPGIA 116 (169)
T ss_pred HHHHHHHHHHcCCCHHHH
Confidence 55555666 889886543
No 210
>TIGR00268 conserved hypothetical protein TIGR00268. The N-terminal region of the model shows similarity to Argininosuccinate synthase proteins using PSI-blast and using the recognize protein identification server.
Probab=21.01 E-value=1.6e+02 Score=30.95 Aligned_cols=33 Identities=15% Similarity=0.272 Sum_probs=26.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeec
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLP 657 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~ 657 (799)
++++.|.||.|+--++.++.+. +.++..+++..
T Consensus 14 ~vlVa~SGGvDSs~ll~la~~~----g~~v~av~~~~ 46 (252)
T TIGR00268 14 KVLIAYSGGVDSSLLAAVCSDA----GTEVLAITVVS 46 (252)
T ss_pred CEEEEecCcHHHHHHHHHHHHh----CCCEEEEEecC
Confidence 8999999999999999999876 34566677753
No 211
>COG1646 Predicted phosphate-binding enzymes, TIM-barrel fold [General function prediction only]
Probab=20.97 E-value=2.5e+02 Score=29.27 Aligned_cols=63 Identities=16% Similarity=0.164 Sum_probs=48.0
Q ss_pred EEEEEEecCCC-ChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEEcC
Q 046529 532 VHTLTSVSSHE-SMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDR 601 (799)
Q Consensus 532 v~~~t~vs~~~-~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvdR 601 (799)
..++|-++|.+ ...++|.+.+.+-++|.|++|= ++|.-+. ..+.+.+++-++..-+|-++...
T Consensus 16 ~~H~tliDP~k~~~~~ei~~~~~~~GTDaImIGG-----S~gvt~~--~~~~~v~~ik~~~~lPvilfP~~ 79 (240)
T COG1646 16 KRHLTLIDPDKTEEADEIAEAAAEAGTDAIMIGG-----SDGVTEE--NVDNVVEAIKERTDLPVILFPGS 79 (240)
T ss_pred ceEEEEeCcccccccHHHHHHHHHcCCCEEEECC-----cccccHH--HHHHHHHHHHhhcCCCEEEecCC
Confidence 46789999988 8899999999999999999992 3332211 36677788877888888666433
No 212
>PRK00972 tetrahydromethanopterin S-methyltransferase subunit E; Provisional
Probab=20.45 E-value=5.7e+02 Score=26.96 Aligned_cols=128 Identities=10% Similarity=0.044 Sum_probs=65.5
Q ss_pred ccccccccccc---cCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCCChhhhhhee-eccCCChHHHHHHHHHHHH
Q 046529 22 ANSSGTIRIWR---NHDQFNFPSYAPLFLIQLAYVLFINHLLVAILKPLRQPPIVGQILE-MFPYKSVMLLETYAYIALL 97 (799)
Q Consensus 22 ~~~~~~~g~~~---~~~p~~~~~~l~~~l~qi~lil~~s~~~~~ll~rl~~P~ivg~Ila-l~p~~~~~~l~~la~lGli 97 (799)
|.+.+-+.+++ ..+|..| .+ . ..++....+.+-.+++|.+++.++. ....-...+..+-+.+|-+
T Consensus 45 PQmg~~HR~fNKAiSGEP~ay--gl---~------~ai~g~vA~~lm~~~~~~vlAi~~Ga~vaa~vhg~ya~taylGR~ 113 (292)
T PRK00972 45 PQMGNIHRIFNKAISGEPVAY--GL---W------CAIAGAVAWALMAFGLNPVLAIIVGAGVAALVHGVYATTAYLGRI 113 (292)
T ss_pred hhcCcHHHHhhhhccCCCchh--HH---H------HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 33345556665 3566665 22 1 2223333444448899999887766 1111112233444444444
Q ss_pred HHHHHHhhccChHHHHhcCCCchhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHHhh
Q 046529 98 FYLFLIGLDMDINLISATGMTNKVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFCAVALTA 165 (799)
Q Consensus 98 ~~lFl~Gle~d~~~l~~~~~~~~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~ls~ 165 (799)
-=-=.-|=-+-++.++.+- .....-++........+.++....+.++++.+ ..++.+|+.+..
T Consensus 114 asq~~F~QPvylDvl~sh~--~~i~~haFIa~Fci~~~~Ylm~~~L~hPFPLP---lla~iwGItvGA 176 (292)
T PRK00972 114 ASQSKFGQPVYLDVLRSHT--GPIMGHAFIATFCIVTLSYLMTTALGHPFPLP---LLALIWGITVGA 176 (292)
T ss_pred HHHHhcCCceeHHHHHhhc--hhHHHHHHHHHHHHHHHHHHHHHhccCCCchh---HHHHHHHHhhcc
Confidence 3222223334456677766 66666666655555555555555555444333 466777766643
Done!