Query 046529
Match_columns 799
No_of_seqs 316 out of 2068
Neff 7.7
Searched_HMMs 29240
Date Mon Mar 25 23:02:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046529.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046529hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zcd_A Na(+)/H(+) antiporter 1 99.9 1.2E-24 4.1E-29 237.3 10.8 303 86-419 58-384 (388)
2 3mt0_A Uncharacterized protein 99.6 1.7E-14 5.7E-19 153.9 22.0 262 442-778 8-278 (290)
3 3cis_A Uncharacterized protein 99.6 3.9E-14 1.3E-18 152.4 19.3 281 441-776 19-306 (309)
4 3olq_A Universal stress protei 99.6 2.8E-14 9.7E-19 153.9 16.8 285 442-780 8-309 (319)
5 3loq_A Universal stress protei 99.6 1.1E-14 3.8E-19 155.5 12.8 267 442-778 23-292 (294)
6 3ab8_A Putative uncharacterize 99.5 3.8E-13 1.3E-17 141.4 19.7 257 443-774 2-267 (268)
7 3hgm_A Universal stress protei 98.8 2.1E-08 7.1E-13 94.6 10.4 141 442-597 3-146 (147)
8 3s3t_A Nucleotide-binding prot 98.8 1.2E-08 4.1E-13 96.2 7.8 138 442-598 6-145 (146)
9 3fdx_A Putative filament prote 98.7 4.9E-08 1.7E-12 91.6 11.7 138 442-598 2-142 (143)
10 3dlo_A Universal stress protei 98.7 6.4E-08 2.2E-12 92.9 11.8 130 441-598 24-154 (155)
11 1mjh_A Protein (ATP-binding do 98.7 1.2E-07 4.2E-12 91.0 13.6 142 442-598 6-157 (162)
12 3tnj_A Universal stress protei 98.7 4.6E-08 1.6E-12 92.7 9.9 139 442-599 7-146 (150)
13 2dum_A Hypothetical protein PH 98.7 8.2E-08 2.8E-12 93.2 11.2 145 442-599 6-155 (170)
14 2z08_A Universal stress protei 98.6 8.7E-08 3E-12 89.5 9.4 133 442-598 3-136 (137)
15 1tq8_A Hypothetical protein RV 98.6 8.7E-08 3E-12 92.8 9.5 137 441-598 17-156 (163)
16 3fg9_A Protein of universal st 98.6 4.6E-08 1.6E-12 93.6 7.4 137 441-598 15-155 (156)
17 2gm3_A Unknown protein; AT3G01 98.6 2.1E-07 7.3E-12 90.7 11.1 148 442-601 6-164 (175)
18 3idf_A USP-like protein; unive 98.5 2.8E-07 9.7E-12 85.9 9.6 132 443-598 3-137 (138)
19 1jmv_A USPA, universal stress 98.4 1.8E-06 6.1E-11 80.7 11.1 131 442-599 3-137 (141)
20 3s3t_A Nucleotide-binding prot 98.3 2E-06 7E-11 80.7 9.5 135 620-775 6-146 (146)
21 3idf_A USP-like protein; unive 98.3 9.8E-06 3.4E-10 75.2 13.7 132 620-774 2-137 (138)
22 3hgm_A Universal stress protei 98.3 2.1E-06 7.1E-11 80.7 8.9 139 620-774 3-147 (147)
23 3dlo_A Universal stress protei 98.3 2E-06 6.8E-11 82.4 8.8 127 620-775 25-155 (155)
24 3fdx_A Putative filament prote 98.1 1.1E-05 3.8E-10 75.3 11.0 134 620-775 2-143 (143)
25 2z08_A Universal stress protei 98.1 8.4E-06 2.9E-10 75.7 10.0 133 620-775 3-137 (137)
26 1q77_A Hypothetical protein AQ 98.1 6.1E-06 2.1E-10 76.7 8.9 130 442-597 5-136 (138)
27 3tnj_A Universal stress protei 98.1 1.1E-05 3.7E-10 76.1 10.4 135 620-777 7-148 (150)
28 3mt0_A Uncharacterized protein 98.1 3.9E-06 1.3E-10 88.8 8.0 137 440-601 133-277 (290)
29 3fg9_A Protein of universal st 98.1 7.3E-06 2.5E-10 78.0 7.9 133 620-775 16-156 (156)
30 1mjh_A Protein (ATP-binding do 98.0 2E-05 6.7E-10 75.4 10.9 138 621-776 7-159 (162)
31 2dum_A Hypothetical protein PH 98.0 1.7E-05 5.9E-10 76.5 10.5 138 621-778 7-158 (170)
32 1tq8_A Hypothetical protein RV 98.0 1.7E-05 5.8E-10 76.5 9.7 135 621-777 19-159 (163)
33 3olq_A Universal stress protei 98.0 1.1E-05 3.7E-10 86.4 8.3 147 441-604 156-309 (319)
34 3loq_A Universal stress protei 98.0 1.8E-05 6E-10 83.8 9.6 120 440-598 169-288 (294)
35 1jmv_A USPA, universal stress 97.9 4.3E-05 1.5E-09 71.1 9.7 132 620-777 3-139 (141)
36 3ab8_A Putative uncharacterize 97.7 5.3E-05 1.8E-09 78.8 7.9 139 620-777 1-150 (268)
37 3zux_A Transporter, ASBTNM; tr 97.7 0.013 4.6E-07 62.9 26.5 110 88-210 41-154 (332)
38 3cis_A Uncharacterized protein 97.7 0.0001 3.5E-09 78.5 9.7 132 442-598 172-304 (309)
39 1q77_A Hypothetical protein AQ 97.6 0.00011 3.9E-09 68.0 7.7 37 620-656 5-41 (138)
40 2gm3_A Unknown protein; AT3G01 97.6 0.00043 1.5E-08 67.0 11.8 139 620-777 6-164 (175)
41 3g40_A Na-K-CL cotransporter; 95.6 0.18 6.3E-06 52.1 14.6 221 441-733 20-255 (294)
42 3zux_A Transporter, ASBTNM; tr 66.6 47 0.0016 35.0 12.6 95 281-383 27-123 (332)
43 1zun_A Sulfate adenylyltransfe 60.9 9.4 0.00032 40.4 5.7 38 621-658 48-85 (325)
44 2wsi_A FAD synthetase; transfe 57.3 48 0.0016 34.5 10.4 92 621-734 55-169 (306)
45 1efv_B Electron transfer flavo 55.3 13 0.00044 37.9 5.4 82 626-732 36-126 (255)
46 1efp_B ETF, protein (electron 55.1 14 0.00047 37.6 5.6 80 628-732 35-123 (252)
47 1o97_C Electron transferring f 54.9 9.3 0.00032 39.2 4.3 84 625-732 32-122 (264)
48 1ni5_A Putative cell cycle pro 53.0 22 0.00076 39.1 7.3 92 621-732 15-118 (433)
49 1wy5_A TILS, hypothetical UPF0 46.7 23 0.00079 37.1 5.9 38 621-658 26-64 (317)
50 3fwk_A FMN adenylyltransferase 46.7 76 0.0026 33.1 9.6 91 621-733 60-171 (308)
51 3a2k_A TRNA(Ile)-lysidine synt 44.8 22 0.00075 39.5 5.6 58 621-693 20-77 (464)
52 1iv0_A Hypothetical protein; r 43.5 42 0.0014 28.7 6.0 56 543-602 38-94 (98)
53 2l0e_A Sodium/hydrogen exchang 35.5 7.9 0.00027 26.3 0.0 27 154-180 4-30 (33)
54 2oq2_A Phosphoadenosine phosph 30.5 49 0.0017 33.5 5.1 37 621-658 43-79 (261)
55 2k3c_A TMIX peptide; membrane 29.3 1.3 4.5E-05 30.1 -4.7 27 264-290 4-30 (33)
56 1sur_A PAPS reductase; assimil 27.5 70 0.0024 31.0 5.5 34 621-658 46-79 (215)
57 1nu0_A Hypothetical protein YQ 24.4 83 0.0028 28.6 4.9 70 531-603 26-98 (138)
58 2k4m_A TR8_protein, UPF0146 pr 21.5 1.4E+02 0.0046 27.7 5.6 36 534-569 92-127 (153)
No 1
>1zcd_A Na(+)/H(+) antiporter 1; membrane protein; 3.45A {Escherichia coli} PDB: 3fi1_A
Probab=99.91 E-value=1.2e-24 Score=237.28 Aligned_cols=303 Identities=17% Similarity=0.162 Sum_probs=218.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccChHHH----HhcCCCc--hhhHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhHHHHH
Q 046529 86 MLLETYAYIALLFYLFLIGLDMDINLI----SATGMTN--KVVSIALAGTLVPMAVGLGAFFLVIGESQEFITQGGYMFC 159 (799)
Q Consensus 86 ~~l~~la~lGli~~lFl~Gle~d~~~l----~~~~~~~--~~~~ia~~~~lip~~~g~~~~~~l~~~~~~~~~~~~~l~l 159 (799)
+....+.+-.+.+|||.+|+|+|.+.+ ++.+ | .+...++.|+++|++++.. +..+ ...+...
T Consensus 58 ~l~~windglm~lFff~vGLEik~e~l~G~L~~~~--~a~~p~~aAlgGmivP~~iy~~----~~~~------~~~~~~g 125 (388)
T 1zcd_A 58 NMLLWINDALMAVFFLLVGLEVKRELMQGSLASLR--QAAFPVIAAIGGMIVPALLYLA----FNYA------DPITREG 125 (388)
T ss_dssp EHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSSTT--TSHHHHHHHHHHTTTTHHHHGG----GCCS------STTHHHH
T ss_pred cHHHHHhhHhHHHHHHHHHHHhhHHHhcchhhhhh--hHHHHHHHHHHHHHHHHHHHHH----HhcC------Chhhhhh
Confidence 456677788889999999999999877 5555 4 3788899999999987422 2221 1234455
Q ss_pred HHHHhhccHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHHHH
Q 046529 160 AVALTATNFQELTQILTDLRI-LHLDIGRIALSSALLSDLFTWMLLLACILVSNPSQYYEVLSTVGFILICVVVVRPALS 238 (799)
Q Consensus 160 ~~~ls~Ts~pvv~~iL~elkl-~~s~~g~lals~a~v~D~~~~ill~~~~~~~~~~~~~~~~~~~~~~~~~~~v~r~~~~ 238 (799)
..+.+.|+.+....++..++. .++..++.+++.|++||+.+|++++++++ .+...+.+...++++++.
T Consensus 126 w~ip~ATdIAfal~vL~~lg~~~p~~l~~flLalAvvDDl~aiivIAvfyt--~~~~~~~l~~~~~~~~~~--------- 194 (388)
T 1zcd_A 126 WAIPAATDIAFALGVLALLGSRVPLALKIFLMALAIIDDLGAIIIIALFYT--NDLSMASLGVAAVAIAVL--------- 194 (388)
T ss_dssp TSSSSCCCHHHHHHHHHSSCSSSCSSSHHHHHHHHHHHHHHHHHHHHHHSC--CCCCHHHHHHHHHHHHHH---------
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHHHHc--CCccHHHHHHHHHHHHHH---------
Confidence 566777888888899998755 45667799999999999999999998864 221121222111121111
Q ss_pred HHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHhhcCCCC----CchhHHHHHHhhhhhhhhhhHH
Q 046529 239 WVFCSAIRGDNNLSDTHISFVLAGVLLCGFITDGCGAHSAIGAFTLGVIMPKKQ----PITNTFKDKLDDFLVSSGLPGF 314 (799)
Q Consensus 239 ~l~~~~~~~~~~~~~~~~~~il~~~l~~~~~ae~~G~~~ilGaf~aGl~lp~~~----~~~~~l~~kl~~~~~~l~lPlF 314 (799)
++.+|. + .+....+.++ . +++.+.++..|+|+++|+|++|+++|+.+ +..+++++++++++..+++|+|
T Consensus 195 ~~l~r~--~---v~~~~~y~~l-g-l~~w~~~~~sGvHatigg~l~Gl~ip~~~~~~~~~~~~le~~l~p~v~~~ilPlF 267 (388)
T 1zcd_A 195 AVLNLC--G---ARRTGVYILV-G-VVLWTAVLKSGVHATLAGVIVGFFIPLKEKHGRSPAKRLEHVLHPWVAYLILPLF 267 (388)
T ss_dssp HHHHHT--T---CCCTHHHHHH-H-HHHHHHTTTSHHHHHHHHHHHHHHSCCCGGGSSCHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHHHHh--c---chhHHHHHHH-H-HHHHHHHHHhCccHHHHHHHHHHhccCCCccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 222332 1 3333344433 2 24456779999999999999999999743 4578999999999999999999
Q ss_pred -HHHhhhccccccccCchhHHHHHHHHHHHHHHHHHHHHHHHHhh----------CCChHHHHHHHHHHhhhhhHHHHHH
Q 046529 315 -FLLTGFRSNLVVFSSHKPWMFVLVVLFGFGMSKILITFLVSLLH----------KIPPKEGLALGLLMNTKGLLALIVL 383 (799)
Q Consensus 315 -F~~~Gl~idl~~l~~~~~~~~~~~ii~~~~~~K~~~~~l~~~~~----------~~~~~e~~~lgl~l~~kG~v~l~~~ 383 (799)
|+..|+++|...+... .-.....+++..+++|++|++..++.. |++|+|...+|++++.+++++++++
T Consensus 268 aFanaGv~l~~~~~~~l-~~~~~lgi~~glvvGK~~Gi~~~~~l~~rl~~~~lp~g~~~~~~~~vg~L~gigftmsL~Ia 346 (388)
T 1zcd_A 268 AFANAGVSLQGVTLDGL-TSILPLGIIAGLLIGKPLGISLFCWLALRLKLAHLPEGTTYQQIMVVGILCGIGFTMSIFIA 346 (388)
T ss_dssp HHHHCCCCCSSSCCCTH-HHHSSTTTTHHHHHTTGGGSTTHHHHTSSCTTTCCCCSCCGGGGTTHHHHTTCCHHHHHHHH
T ss_pred HHHhcCeeecccchhhc-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCCCCHHHHHHHHHHhccchHHHHHHH
Confidence 9999999997533221 111223555566899999966666665 9999999999999999999999999
Q ss_pred hhhccCCC--CCCCchhHHHHHHHHHHHHHHHHHHHhh
Q 046529 384 NTACNRKD--LVDEAFPPTIFALFVMTCVIEPILAATY 419 (799)
Q Consensus 384 ~~~~~~~i--i~~~~f~~lv~~~lv~t~i~~plv~~ly 419 (799)
+++++.+. +.++.+..+++++++++.+.+.++++.+
T Consensus 347 ~laf~~~~~~~~~~ak~~il~~s~~s~i~g~~~L~~~~ 384 (388)
T 1zcd_A 347 SLAFGSVDPELINWAKLGILVGSISSAVIGYSWLRVRL 384 (388)
T ss_dssp HHHSTTSSCSSHHHHHHHHHHHHHTTTSTTTGGGTTTC
T ss_pred HHhccCCchhhHhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99998876 3556688888888886666665655443
No 2
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=99.63 E-value=1.7e-14 Score=153.90 Aligned_cols=262 Identities=15% Similarity=0.108 Sum_probs=169.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++.+++....++.+..++...+. .++++|+++ + +. . ++.++.+.+
T Consensus 8 ~~ILv~~D~s~~s~~al~~A~~la~~~~a--~l~ll~v~~-~----------~~--------~--------~~~l~~~~~ 58 (290)
T 3mt0_A 8 RSILVVIEPDQLEGLALKRAQLIAGVTQS--HLHLLVCEK-R----------RD--------H--------SAALNDLAQ 58 (290)
T ss_dssp CEEEEECCSSCSCCHHHHHHHHHHHHHCC--EEEEEEECS-S----------SC--------C--------HHHHHHHHH
T ss_pred ceEEEEeCCCccchHHHHHHHHHHHhcCC--eEEEEEeeC-c----------HH--------H--------HHHHHHHHH
Confidence 48999999999999999999888866554 579999986 1 11 0 122222222
Q ss_pred HHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEEcC
Q 046529 522 YEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVDR 601 (799)
Q Consensus 522 ~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvdR 601 (799)
.... .++.++...... .+..+.|++.|++.++|+|++|.|++...++.+ ++++.+++++++||+|.++ ..
T Consensus 59 ~~~~--~~~~~~~~~~~~--g~~~~~i~~~a~~~~~dliV~G~~~~~~~~~~~-----~gs~~~~vl~~~~~PVlvv-~~ 128 (290)
T 3mt0_A 59 ELRE--EGYSVSTNQAWK--DSLHQTIIAEQQAEGCGLIIKQHFPDNPLKKAI-----LTPDDWKLLRFAPCPVLMT-KT 128 (290)
T ss_dssp HHHH--TTCCEEEEEECS--SSHHHHHHHHHHHHTCSEEEEECCCSCTTSTTS-----CCHHHHHHHHHCSSCEEEE-CC
T ss_pred HHhh--CCCeEEEEEEeC--CCHHHHHHHHHHhcCCCEEEEecccCCchhhcc-----cCHHHHHHHhcCCCCEEEe-cC
Confidence 2222 467777666543 478999999999999999999999876544443 6778899999999998654 22
Q ss_pred CCCCCcccccccccccccceEEEeccCCcc-------hHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCcccc
Q 046529 602 GLGSDEDKESQLKDHHGIQHLLMLFLGGPD-------DREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVA 674 (799)
Q Consensus 602 g~~~~~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~ 674 (799)
+.. . ... +|++++.|.++ ++.|+++|.++|+..+++++++|+.+..... ... ......
T Consensus 129 ~~~------~---~~~---~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~-~~~~~~ 193 (290)
T 3mt0_A 129 ARP------W---TGG---KILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAKATLHVISAHPSPMLS--SAD-PTFQLS 193 (290)
T ss_dssp CSC------S---TTC---EEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTTCEEEEEEEEC------------CHHHH
T ss_pred CCC------C---CCC---eEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcCCeEEEEEEecCcccc--ccC-chhHHH
Confidence 211 1 123 99999999998 7999999999999999999999998643220 000 000000
Q ss_pred ccchhhcHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCc
Q 046529 675 RCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPE 752 (799)
Q Consensus 675 ~~~e~~~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~e 752 (799)
+..++..++.++++.+++.. ..+.+. ....+. .+.|.+. ..++||+|+|+++. .|+. +| =
T Consensus 194 -~~~~~~~~~~l~~~~~~~g~-~~~~~~-v~~g~~---~~~I~~~a~~~~~dLiVmG~~g~------~~~~--~~----~ 255 (290)
T 3mt0_A 194 -ETIEARYREACRTFQAEYGF-SDEQLH-IEEGPA---DVLIPRTAQKLDAVVTVIGTVAR------TGLS--GA----L 255 (290)
T ss_dssp -HHHHHHHHHHHHHHHHHHTC-CTTTEE-EEESCH---HHHHHHHHHHHTCSEEEEECCSS------CCGG--GC----C
T ss_pred -HHHHHHHHHHHHHHHHHcCC-CcceEE-EeccCH---HHHHHHHHHhcCCCEEEECCCCC------cCCc--ce----e
Confidence 11122334556666655422 112111 111222 2333322 34699999999875 2344 22 3
Q ss_pred cccchhhhhcCCCCcceeEEEEeeec
Q 046529 753 LGVIGSVLAMSNFSLHASVLVIQQYI 778 (799)
Q Consensus 753 LG~iGd~Las~d~~~~~SvLVvqq~~ 778 (799)
+|-..+-+... ++++||||..+.
T Consensus 256 ~Gsv~~~vl~~---~~~pVLvv~~~~ 278 (290)
T 3mt0_A 256 IGNTAEVVLDT---LESDVLVLKPDD 278 (290)
T ss_dssp SCHHHHHHHTT---CSSEEEEECCHH
T ss_pred cchHHHHHHhc---CCCCEEEECCCC
Confidence 78888888764 678999997654
No 3
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=99.58 E-value=3.9e-14 Score=152.41 Aligned_cols=281 Identities=14% Similarity=0.124 Sum_probs=170.4
Q ss_pred cceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHH
Q 046529 441 EFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFE 520 (799)
Q Consensus 441 e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 520 (799)
--|||+|++..++....++.+..++...+. .++++|+++ +.... . .... . ..+.........++.++.+.
T Consensus 19 ~~~ILv~~D~s~~s~~al~~A~~lA~~~~a--~l~ll~v~~-~~~~~-~--~~~~--~--~~~~~~~~~~~~~~~l~~~~ 88 (309)
T 3cis_A 19 SLGIIVGIDDSPAAQVAVRWAARDAELRKI--PLTLVHAVS-PEVAT-W--LEVP--L--PPGVLRWQQDHGRHLIDDAL 88 (309)
T ss_dssp TTEEEEECCSSHHHHHHHHHHHHHHHHHTC--CEEEEEECC-CCCCC-T--TCCC--C--CHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHHHHHhcCC--cEEEEEEec-Ccccc-c--ccCC--C--CchhhHHHHHHHHHHHHHHH
Confidence 468999999999999999988888765444 579999987 22111 0 0000 0 00000001123344444433
Q ss_pred HHHHhc---CCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 521 NYEKTS---NNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 521 ~~~~~~---~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
+..+.. ..++.++..... .+..+.|++.|+ ++|+||||.|++....+.+ ++++.++|++++||+|.|
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~---g~~~~~I~~~a~--~~DliV~G~~g~~~~~~~~-----~Gs~~~~vl~~~~~PVlv 158 (309)
T 3cis_A 89 KVVEQASLRAGPPTVHSEIVP---AAAVPTLVDMSK--DAVLMVVGCLGSGRWPGRL-----LGSVSSGLLRHAHCPVVI 158 (309)
T ss_dssp HHHHHHCSSSCCSCEEEEEES---SCHHHHHHHHGG--GEEEEEEESSCTTCCTTCC-----SCHHHHHHHHHCSSCEEE
T ss_pred HHHHHhcccCCCceEEEEEec---CCHHHHHHHHhc--CCCEEEECCCCCccccccc-----cCcHHHHHHHhCCCCEEE
Confidence 332221 125677765543 478999999996 8999999999876544433 678899999999999966
Q ss_pred EEcCCCCCCcccccccccccccceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccc
Q 046529 598 FVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCT 677 (799)
Q Consensus 598 lvdRg~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~ 677 (799)
+-.+.... ...... +|++++.|++.++.|+++|.++|+..+.+++++++.++......... ..+.
T Consensus 159 v~~~~~~~------~~~~~~---~Ilv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~------~~~~ 223 (309)
T 3cis_A 159 IHDEDSVM------PHPQQA---PVLVGVDGSSASELATAIAFDEASRRNVDLVALHAWSDVDVSEWPGI------DWPA 223 (309)
T ss_dssp ECTTCCCS------CSSCCC---CEEEECCSSHHHHHHHHHHHHHHHHTTCCEEEEEESCSSCCTTCSSC------CHHH
T ss_pred EcCCcccC------CCCCCC---eEEEEeCCChHHHHHHHHHHHHHHhcCCEEEEEEEeecccccCCCcc------cHHH
Confidence 53322110 011123 99999999999999999999999999999999999864321000000 0011
Q ss_pred hhhcHHHHHHH----hhhhcCCCCCeEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCcc
Q 046529 678 EKQADDEDIYE----FKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPEL 753 (799)
Q Consensus 678 e~~~d~~~l~~----~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eL 753 (799)
..+..++.+++ +..++. +-.+.+ . +..| +..+.|.+..++.||+|+|++++ .++. .-=+
T Consensus 224 ~~~~~~~~l~~~~~~~~~~~~-~~~~~~--~-~~~g-~~~~~I~~~a~~adliV~G~~~~------~~~~------~~l~ 286 (309)
T 3cis_A 224 TQSMAEQVLAERLAGWQERYP-NVAITR--V-VVRD-QPARQLVQRSEEAQLVVVGSRGR------GGYA------GMLV 286 (309)
T ss_dssp HHHHHHHHHHHHHTTHHHHCT-TSCEEE--E-EESS-CHHHHHHHHHTTCSEEEEESSCS------SCCT------TCSS
T ss_pred HHHHHHHHHHHHHHHHHhhCC-CCcEEE--E-EEcC-CHHHHHHHhhCCCCEEEECCCCC------CCcc------cccc
Confidence 11112233333 333221 122332 2 3334 34455555545899999999865 1333 2236
Q ss_pred ccchhhhhcCCCCcceeEEEEee
Q 046529 754 GVIGSVLAMSNFSLHASVLVIQQ 776 (799)
Q Consensus 754 G~iGd~Las~d~~~~~SvLVvqq 776 (799)
|-+.+-+... ++.+||||..
T Consensus 287 Gsv~~~vl~~---~~~pVlvv~~ 306 (309)
T 3cis_A 287 GSVGETVAQL---ARTPVIVARE 306 (309)
T ss_dssp CHHHHHHHHH---CSSCEEEECC
T ss_pred CcHHHHHHhc---CCCCEEEeCC
Confidence 8787777754 5679999975
No 4
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=99.57 E-value=2.8e-14 Score=153.90 Aligned_cols=285 Identities=12% Similarity=0.045 Sum_probs=174.2
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCc-chhhhhccCCCCCCCCCCCCCcchhhHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHS-TAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFE 520 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 520 (799)
-|||+|++.+++....++.+..++...+ ..++++|+++-.... ...+..... ...........++.++.+.
T Consensus 8 k~ILv~~D~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~l~~~~ 79 (319)
T 3olq_A 8 QNLLVVIDPNQDDQPALRRAVYIVQRNG--GRIKAFLPVYDLSYDMTTLLSPDER------NAMRKGVINQKTAWIKQQA 79 (319)
T ss_dssp CEEEEECCTTCSCCHHHHHHHHHHHHHC--CEEEEEEEECCGGGGCTTTSCHHHH------HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCcccHHHHHHHHHHHHHcC--CeEEEEEEecccchhhccccChhhH------HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888886555 467999998632110 000000000 0000000122233344333
Q ss_pred HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEEc
Q 046529 521 NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVD 600 (799)
Q Consensus 521 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvd 600 (799)
..... .+++++...... .+..+.|++.|++.++|+|++|.|++...++.+ ++++.++|++++||+|.+.-+
T Consensus 80 ~~~~~--~~v~~~~~~~~~--g~~~~~i~~~a~~~~~DLiV~G~~g~~~~~~~~-----~Gs~~~~vl~~~~~PVlvv~~ 150 (319)
T 3olq_A 80 RYYLE--AGIQIDIKVIWH--NRPYEAIIEEVITDKHDLLIKMAHQHDKLGSLI-----FTPLDWQLLRKCPAPVWMVKD 150 (319)
T ss_dssp HHHHH--TTCCEEEEEEEC--SCHHHHHHHHHHHHTCSEEEEEEBCC--CCSCB-----CCHHHHHHHHHCSSCEEEEES
T ss_pred HHHhh--cCCeEEEEEEec--CChHHHHHHHHHhcCCCEEEEecCcCchhhccc-----ccccHHHHHhcCCCCEEEecC
Confidence 32222 567777766533 488999999999999999999999875544443 677889999999999966533
Q ss_pred CCCCCCcccccccccccccceEEEeccCCcc-------hHHHHHHHHHHhhCC--CeEEEEEEeecCCCCCccccccCCc
Q 046529 601 RGLGSDEDKESQLKDHHGIQHLLMLFLGGPD-------DREALAYAWRMAAHP--NVKLTVVRFLPGKDPRTVLHQKHNS 671 (799)
Q Consensus 601 Rg~~~~~~~~~~~~~~~~~~~I~v~f~GG~d-------dreAL~~A~rma~~~--~v~ltvvr~~~~~~~~~~~~~~~~~ 671 (799)
+... ... ||++++.|.++ ++.|+++|.++|+.. +.+++++|+.+..... . ..+.
T Consensus 151 ~~~~----------~~~---~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~---~-~~~~ 213 (319)
T 3olq_A 151 KEWP----------EYG---TIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPIN---I-AIEL 213 (319)
T ss_dssp SCCC----------TTC---EEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCS---C-CTTC
T ss_pred cccc----------cCC---eEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchh---h-hccC
Confidence 2111 123 99999999985 499999999999876 9999999998653321 0 0000
Q ss_pred c---ccc--cchhhcHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCc
Q 046529 672 E---VAR--CTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSL 744 (799)
Q Consensus 672 ~---~~~--~~e~~~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~ 744 (799)
. ..+ +..++..++.++++..++.. ..+.+. +..|. ....|.+. ..+.||+|+|++++ .|+.
T Consensus 214 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---v~~g~-~~~~I~~~a~~~~~dLiV~G~~g~------~~~~- 281 (319)
T 3olq_A 214 PDFDPNLYNNALRGQHLIAMKELRQKFSI-PEEKTH---VKEGL-PEQVIPQVCEELNAGIVVLGILGR------TGLS- 281 (319)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHTTC-CGGGEE---EEESC-HHHHHHHHHHHTTEEEEEEECCSC------CSTH-
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHhCC-CcccEE---EecCC-cHHHHHHHHHHhCCCEEEEeccCc------cCCc-
Confidence 0 000 11122234556666655432 122221 11221 23333332 34789999999864 2333
Q ss_pred CCCCCCCccccchhhhhcCCCCcceeEEEEeeeccC
Q 046529 745 DNLTNFPELGVIGSVLAMSNFSLHASVLVIQQYISR 780 (799)
Q Consensus 745 ~~w~e~~eLG~iGd~Las~d~~~~~SvLVvqq~~~~ 780 (799)
+| =+|-+.+-+... ++++||||..+...
T Consensus 282 -~~----~~Gsv~~~vl~~---~~~pVLvv~~~~~~ 309 (319)
T 3olq_A 282 -AA----FLGNTAEQLIDH---IKCDLLAIKPDGFT 309 (319)
T ss_dssp -HH----HHHHHHHHHHTT---CCSEEEEECCTTCC
T ss_pred -cc----cccHHHHHHHhh---CCCCEEEECCCCCC
Confidence 21 378777777763 67899999876544
No 5
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=99.56 E-value=1.1e-14 Score=155.52 Aligned_cols=267 Identities=12% Similarity=0.061 Sum_probs=170.2
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++.+++....++.+..++...+ ..++++|+++.+...... .... ..+.........++.++.+.+
T Consensus 23 ~~ILv~vD~s~~s~~al~~A~~lA~~~~--a~l~ll~v~~~~~~~~~~--~~~~-----~~~~~~~~~~~~~~~l~~~~~ 93 (294)
T 3loq_A 23 NAMLLPTDLSENSFKVLEYLGDFKKVGV--EEIGVLFVINLTKLSTVS--GGID-----IDHYIDEMSEKAEEVLPEVAQ 93 (294)
T ss_dssp CEEEEECCSCTGGGGGGGGHHHHHHTTC--CEEEEECCEECTTC-------CCC-----TTHHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEecCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCccccccc--cccc-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888886554 467999999865432100 0000 000000112344555555554
Q ss_pred HHHhcCCceeEEE-EEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEEc
Q 046529 522 YEKTSNNAVNVHT-LTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFVD 600 (799)
Q Consensus 522 ~~~~~~~~v~v~~-~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlvd 600 (799)
..+. .+++++. ... ...+..+.| .|++.++|+|++|.|++....+.+ ++++.++|++++||+|.|+ .
T Consensus 94 ~~~~--~g~~~~~~~v~--~~g~~~~~I--~a~~~~~DliV~G~~g~~~~~~~~-----~Gs~~~~vl~~~~~PVlvv-~ 161 (294)
T 3loq_A 94 KIEA--AGIKAEVIKPF--PAGDPVVEI--IKASENYSFIAMGSRGASKFKKIL-----LGSVSEGVLHDSKVPVYIF-K 161 (294)
T ss_dssp HHHH--TTCEEEECSSC--CEECHHHHH--HHHHTTSSEEEEECCCCCHHHHHH-----HCCHHHHHHHHCSSCEEEE-C
T ss_pred HHHH--cCCCcceeEee--ccCChhHhe--eeccCCCCEEEEcCCCCcccccee-----eccHHHHHHhcCCCCEEEe-c
Confidence 4443 4677766 333 123778998 999999999999998765433332 5677899999999999654 3
Q ss_pred CCCCCCcccccccccccccceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhh
Q 046529 601 RGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQ 680 (799)
Q Consensus 601 Rg~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~ 680 (799)
++... ..... +|++++.|.++++.|+++|.++++..+.+++++++.++... ++
T Consensus 162 ~~~~~-------~~~~~---~Ilv~~d~s~~s~~al~~a~~la~~~~~~l~ll~v~~~~~~-----------------~~ 214 (294)
T 3loq_A 162 HDMVV-------NSLFD---RVLVAYDFSKWADRALEYAKFVVKKTGGELHIIHVSEDGDK-----------------TA 214 (294)
T ss_dssp CCTTT-------TCTTS---EEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEECSSSCC-----------------HH
T ss_pred Ccccc-------CccCC---EEEEEECCCHHHHHHHHHHHHHhhhcCCEEEEEEEccCchH-----------------HH
Confidence 32210 01123 99999999999999999999999999999999999754321 11
Q ss_pred cHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchh
Q 046529 681 ADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGS 758 (799)
Q Consensus 681 ~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd 758 (799)
.-+++.+.++.. +-.+.+ .+..| +..+.|.+. +.++||+|+|+++.. ++. +| -+|-..+
T Consensus 215 ~l~~~~~~l~~~---~~~~~~---~~~~g-~~~~~I~~~a~~~~~dLlV~G~~~~~------~~~--~~----~~Gs~~~ 275 (294)
T 3loq_A 215 DLRVMEEVIGAE---GIEVHV---HIESG-TPHKAILAKREEINATTIFMGSRGAG------SVM--TM----ILGSTSE 275 (294)
T ss_dssp HHHHHHHHHHHT---TCCEEE---EEECS-CHHHHHHHHHHHTTCSEEEEECCCCS------CHH--HH----HHHCHHH
T ss_pred HHHHHHHHHHHc---CCcEEE---EEecC-CHHHHHHHHHHhcCcCEEEEeCCCCC------Ccc--ce----eeCcHHH
Confidence 112233333332 112322 23334 334444433 447999999998751 233 21 3677777
Q ss_pred hhhcCCCCcceeEEEEeeec
Q 046529 759 VLAMSNFSLHASVLVIQQYI 778 (799)
Q Consensus 759 ~Las~d~~~~~SvLVvqq~~ 778 (799)
-+... ++.+||||.+..
T Consensus 276 ~vl~~---~~~pvLvv~~~~ 292 (294)
T 3loq_A 276 SVIRR---SPVPVFVCKRGD 292 (294)
T ss_dssp HHHHH---CSSCEEEECSCT
T ss_pred HHHhc---CCCCEEEECCCC
Confidence 77753 667999998753
No 6
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=99.51 E-value=3.8e-13 Score=141.38 Aligned_cols=257 Identities=14% Similarity=0.070 Sum_probs=163.5
Q ss_pred eEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCC--------CCCcchhhHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDS--------CPMQATEAEQ 514 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~ 514 (799)
|||+|++.+++....++.+..++...+. .++++|+++......+-. ... ....+. ........++
T Consensus 2 ~ILv~vD~s~~s~~al~~A~~lA~~~~a--~l~ll~v~~~~~~~~~~~--~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 74 (268)
T 3ab8_A 2 RILLATDGSPQARGAEALAEWLAYKLSA--PLTVLFVVDTRLARIPEL--LDF---GALTVPVPVLRTELERALALRGEA 74 (268)
T ss_dssp CEEEECCSCGGGHHHHHHHHHHHHHHTC--CEEEEEEEEHHHHTHHHH--C----------CHHHHHHHHHHHHHHHHHH
T ss_pred cEEEEcCCCHHHHHHHHHHHHHHHHhCC--cEEEEEEeccCCcccccc--cCc---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999998888765443 579999987543110000 000 000000 0001123344
Q ss_pred HHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCc-ccCCccccccccHHHHHhhhccCCC
Q 046529 515 FKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPL-TTNDKIRNANTNRTVNLNLLQNTPC 593 (799)
Q Consensus 515 i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~-~~dg~~~~~~~~~~vn~~Vl~~ApC 593 (799)
.++.+.+..+. .+++++...... +..+.|++. +.++|+|+||.|++. ...+.+ ++++.++|++++||
T Consensus 75 ~l~~~~~~~~~--~g~~~~~~~~~g---~~~~~I~~~--~~~~dliV~G~~g~~~~~~~~~-----~Gs~~~~v~~~a~~ 142 (268)
T 3ab8_A 75 VLERVRQSALA--AGVAVEAVLEEG---VPHEAILRR--ARAADLLVLGRSGEAHGDGFGG-----LGSTADRVLRASPV 142 (268)
T ss_dssp HHHHHHHHHHH--TTCCEEEEEEEE---CHHHHHHHH--HTTCSEEEEESSCTTSCTTCCS-----CCHHHHHHHHHCSS
T ss_pred HHHHHHHHHHh--CCCCeEEEEecC---CHHHHHHhh--ccCCCEEEEeccCCCccccccc-----cchhHHHHHHhCCC
Confidence 55555444333 456676665544 789999998 889999999999875 444433 77889999999999
Q ss_pred ceEEEEcCCCCCCcccccccccccccceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccc
Q 046529 594 SVCIFVDRGLGSDEDKESQLKDHHGIQHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEV 673 (799)
Q Consensus 594 sVgIlvdRg~~~~~~~~~~~~~~~~~~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~ 673 (799)
||.+. .++.. ... +|++++.|.++++.|+++|.++|+..+++++++|+.++.+
T Consensus 143 PVlvv-~~~~~----------~~~---~ilv~~d~s~~~~~al~~a~~la~~~~a~l~ll~v~~~~~------------- 195 (268)
T 3ab8_A 143 PVLLA-PGEPV----------ELE---GALLGYDASESAVRALHALAPLARALGLGVRVVSVHEDPA------------- 195 (268)
T ss_dssp CEEEE-CSSCC----------CCC---EEEEECCSCHHHHHHHHHHHHHHHHHTCCEEEEEECSSHH-------------
T ss_pred CEEEE-CCCCC----------CCC---EEEEEECCCHHHHHHHHHHHHhhhcCCCEEEEEEEcCcHH-------------
Confidence 99654 33211 113 9999999999999999999999999999999999974321
Q ss_pred cccchhhcHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCcc
Q 046529 674 ARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPEL 753 (799)
Q Consensus 674 ~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eL 753 (799)
+.++. -+++.+.+... +-.+.+ .+..| +..+.|.+..+++||+++|+ |+. +| =+
T Consensus 196 --~~~~~-l~~~~~~l~~~---~~~~~~---~~~~g-~~~~~i~~~a~~~dliV~G~----------~~~--~~----~~ 249 (268)
T 3ab8_A 196 --RAEAW-ALEAEAYLRDH---GVEASA---LVLGG-DAADHLLRLQGPGDLLALGA----------PVR--RL----VF 249 (268)
T ss_dssp --HHHHH-HHHHHHHHHHT---TCCEEE---EEECS-CHHHHHHHHCCTTEEEEEEC----------CCS--CC----SS
T ss_pred --HHHHH-HHHHHHHHHHc---CCceEE---EEeCC-ChHHHHHHHHHhCCEEEECC----------ccc--cc----Ee
Confidence 11111 12333333331 112332 23334 34556665555559999999 233 22 36
Q ss_pred ccchhhhhcCCCCcceeEEEE
Q 046529 754 GVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 754 G~iGd~Las~d~~~~~SvLVv 774 (799)
|-..+-+... ++.+||||
T Consensus 250 Gs~~~~vl~~---~~~pvlvv 267 (268)
T 3ab8_A 250 GSTAERVIRN---AQGPVLTA 267 (268)
T ss_dssp CCHHHHHHHH---CSSCEEEE
T ss_pred ccHHHHHHhc---CCCCEEEe
Confidence 7777766653 56788887
No 7
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.78 E-value=2.1e-08 Score=94.62 Aligned_cols=141 Identities=11% Similarity=0.085 Sum_probs=93.7
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++..++....++.+..++...+ ..++++|+++.............. ....+.........++.++.+.+
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~ 77 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTG--AELYILCVFKHHSLLEASLSMARP---EQLDIPDDALKDYATEIAVQAKT 77 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHC--CEEEEEEEECCHHHHHHTBSSCCC---GGGCCCTTHHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCcccccccccccCh---hhhhhHHHHHHHHHHHHHHHHHH
Confidence 3799999999999999998888876544 467999999854311111000000 00000111123445666666555
Q ss_pred HHHhcCCceeE---EEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 522 YEKTSNNAVNV---HTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 522 ~~~~~~~~v~v---~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
..+. .++++ +...... +..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||||.|
T Consensus 78 ~~~~--~g~~~~~~~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~-----~Gs~~~~vl~~~~~pVlv 146 (147)
T 3hgm_A 78 RATE--LGVPADKVRAFVKGG---RPSRTIVRFARKRECDLVVIGAQGTNGDKSLL-----LGSVAQRVAGSAHCPVLV 146 (147)
T ss_dssp HHHH--TTCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEECSSCTTCCSCCC-----CCHHHHHHHHHCSSCEEE
T ss_pred HHHh--cCCCccceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCcccccee-----eccHHHHHHhhCCCCEEE
Confidence 5444 34554 5555444 78999999999999999999999876554433 788899999999999865
No 8
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.75 E-value=1.2e-08 Score=96.25 Aligned_cols=138 Identities=13% Similarity=0.125 Sum_probs=94.0
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++..++....++.+..++...+ ..++++|+++.............. +.........++.++.+..
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~~ 76 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQ--ANLTALYVVDDSAYHTPALDPVLS-------ELLDAEAAHAKDAMRQRQQ 76 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEEECCCCCCGGGHHHHH-------HHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccH-------HHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888876544 467999999865433211000000 0000012334445554444
Q ss_pred HHHhcCCce-eEEEEEEecCCCChhHHHHH-HHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 522 YEKTSNNAV-NVHTLTSVSSHESMHEDICC-LAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 522 ~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~-~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
..+. .++ .++...... +..+.|++ .|++.++|+|+||.|++....+.+ ++++.++|++++||||.|+
T Consensus 77 ~~~~--~g~~~~~~~~~~g---~~~~~I~~~~a~~~~~dliV~G~~~~~~~~~~~-----~Gs~~~~vl~~~~~pVlvV 145 (146)
T 3s3t_A 77 FVAT--TSAPNLKTEISYG---IPKHTIEDYAKQHPEIDLIVLGATGTNSPHRVA-----VGSTTSYVVDHAPCNVIVI 145 (146)
T ss_dssp HHTT--SSCCCCEEEEEEE---CHHHHHHHHHHHSTTCCEEEEESCCSSCTTTCS-----SCHHHHHHHHHCSSEEEEE
T ss_pred HHHh--cCCcceEEEEecC---ChHHHHHHHHHhhcCCCEEEECCCCCCCcceEE-----EcchHHHHhccCCCCEEEe
Confidence 4332 456 666666555 78999999 999999999999999876554443 7788999999999998654
No 9
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.74 E-value=4.9e-08 Score=91.63 Aligned_cols=138 Identities=14% Similarity=0.146 Sum_probs=91.5
Q ss_pred ceEEEEeecCCC--hHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 442 FRIMACIHSTRN--IAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 442 ~riLvcv~~~~~--~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
-|||+|++..++ ....++.+..++...+ ..++++|+++......+...... ..........++..+.+
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~l 71 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDD--AEVHFLTVIPSLPYYASLGMAYT--------AELPGMDELREGSETQL 71 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHT--CEEEEEEEECC------------------------CHHHHHHHHHHHH
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcC--CeEEEEEEecCCccccccccccc--------chhhhHHHHHHHHHHHH
Confidence 489999999999 8888888887775444 46799999986543211100000 00111234455666667
Q ss_pred HHHHHhcC-CceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKTSN-NAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~~~-~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
+++.+... .++.++...... +..+.|++.|++.++|+|+||.|+ ....+. .++++.++|++++||||.|+
T Consensus 72 ~~~~~~~~~~~~~v~~~~~~g---~~~~~I~~~a~~~~~dliV~G~~~-~~~~~~-----~~Gs~~~~v~~~~~~pVlvv 142 (143)
T 3fdx_A 72 KEIAKKFSIPEDRMHFHVAEG---SPKDKILALAKSLPADLVIIASHR-PDITTY-----LLGSNAAAVVRHAECSVLVV 142 (143)
T ss_dssp HHHHTTSCCCGGGEEEEEEES---CHHHHHHHHHHHTTCSEEEEESSC-TTCCSC-----SSCHHHHHHHHHCSSEEEEE
T ss_pred HHHHHHcCCCCCceEEEEEec---ChHHHHHHHHHHhCCCEEEEeCCC-CCCeee-----eeccHHHHHHHhCCCCEEEe
Confidence 76665432 245566666555 789999999999999999999985 333333 37888999999999998654
No 10
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.72 E-value=6.4e-08 Score=92.89 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=92.1
Q ss_pred cceEEEEeec-CCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 441 EFRIMACIHS-TRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 441 e~riLvcv~~-~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
--|||+|++. .+.....++.+..++...+. .++++|+++...... + ......++.++.+
T Consensus 24 ~~~ILv~vD~~s~~s~~al~~A~~la~~~~a--~l~llhV~~~~~~~~------~------------~~~~~~~~~l~~~ 83 (155)
T 3dlo_A 24 YMPIVVAVDKKSDRAERVLRFAAEEARLRGV--PVYVVHSLPGGGRTK------D------------EDIIEAKETLSWA 83 (155)
T ss_dssp CCCEEEECCSSSHHHHHHHHHHHHHHHHHTC--CEEEEEEECCSTTSC------H------------HHHHHHHHHHHHH
T ss_pred cCeEEEEECCCCHHHHHHHHHHHHHHHhcCC--EEEEEEEEcCCCccc------H------------HHHHHHHHHHHHH
Confidence 3589999999 99999999998888765444 579999987443110 0 0123345555555
Q ss_pred HHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
.+..+. .++.++..+.+. ..+..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||||.|+
T Consensus 84 ~~~~~~--~g~~~~~~~~v~-~G~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~-----lGSv~~~vl~~a~~PVLvV 154 (155)
T 3dlo_A 84 VSIIRK--EGAEGEEHLLVR-GKEPPDDIVDFADEVDAIAIVIGIRKRSPTGKLI-----FGSVARDVILKANKPVICI 154 (155)
T ss_dssp HHHHHH--TTCCEEEEEEES-SSCHHHHHHHHHHHTTCSEEEEECCEECTTSCEE-----CCHHHHHHHHHCSSCEEEE
T ss_pred HHHHHh--cCCCceEEEEec-CCCHHHHHHHHHHHcCCCEEEECCCCCCCCCCEE-----eccHHHHHHHhCCCCEEEe
Confidence 544443 345555444442 2488999999999999999999999875544433 7888999999999998654
No 11
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.71 E-value=1.2e-07 Score=91.05 Aligned_cols=142 Identities=14% Similarity=0.137 Sum_probs=91.4
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccC----CcchhhhhccCCCCCCCCC------CCCCcchh
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLG----HSTAMLLMNDGSNSTGFND------SCPMQATE 511 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~----r~~~~~~~~~~~~~~~~~~------~~~~~~~~ 511 (799)
-|||+|++..++....++.+..++...+ ..++++|+++... ...+. ...... .. ..+ ........
T Consensus 6 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~-~~~~~~-~~-~~~~~~~~~~~~~~~~~ 80 (162)
T 1mjh_A 6 KKILYPTDFSETAEIALKHVKAFKTLKA--EEVILLHVIDEREIKKRDIFSL-LLGVAG-LN-KSVEEFENELKNKLTEE 80 (162)
T ss_dssp CEEEEECCSCHHHHHHHHHHHHTCCSSC--CEEEEEEEEEGGGTC--------------------CHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CeEEEEEEecCccccccccccc-cccccc-cc-cchhhhHHHHHHHHHHH
Confidence 4899999999999999999988886554 4689999987531 00000 000000 00 000 00000122
Q ss_pred hHHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccC
Q 046529 512 AEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNT 591 (799)
Q Consensus 512 ~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~A 591 (799)
.++.++.+.+..+. .++.++..+... +..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++
T Consensus 81 ~~~~l~~~~~~~~~--~g~~~~~~v~~G---~~~~~I~~~a~~~~~dlIV~G~~g~~~~~~~~-----~GSv~~~vl~~~ 150 (162)
T 1mjh_A 81 AKNKMENIKKELED--VGFKVKDIIVVG---IPHEEIVKIAEDEGVDIIIMGSHGKTNLKEIL-----LGSVTENVIKKS 150 (162)
T ss_dssp HHHHHHHHHHHHHH--TTCEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCSSCCTTCS-----SCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH--cCCceEEEEcCC---CHHHHHHHHHHHcCCCEEEEcCCCCCCccceE-----ecchHHHHHHhC
Confidence 34444444333332 457776665544 78999999999999999999999876554443 788899999999
Q ss_pred CCceEEE
Q 046529 592 PCSVCIF 598 (799)
Q Consensus 592 pCsVgIl 598 (799)
||||.|+
T Consensus 151 ~~pVlvv 157 (162)
T 1mjh_A 151 NKPVLVV 157 (162)
T ss_dssp CSCEEEE
T ss_pred CCCEEEE
Confidence 9999665
No 12
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.70 E-value=4.6e-08 Score=92.73 Aligned_cols=139 Identities=11% Similarity=0.108 Sum_probs=82.9
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++..++....++.+..++...+ ..++++|+++......+....... .+.........++..+.++.
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~ 78 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIG--ARLSLIHVLDNIPMPDTPYGTAIP------LDTETTYDAMLDVEKQKLSQ 78 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEC--------CTTCCC------SSSCCCHHHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEEcCccccccccccccC------cCHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999888886544 467999998754321100000000 00011112223334444555
Q ss_pred HHHhcCCcee-EEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEEE
Q 046529 522 YEKTSNNAVN-VHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIFV 599 (799)
Q Consensus 522 ~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIlv 599 (799)
+.+.. ++. ++..... .+..+.|++.|++.++|+|+||.|++.... .+ ++++.++|++++||||.|+-
T Consensus 79 ~~~~~--~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~-~~-----~Gs~~~~vl~~~~~pVlvv~ 146 (150)
T 3tnj_A 79 IGNTL--GIDPAHRWLVW---GEPREEIIRIAEQENVDLIVVGSHGRHGLA-LL-----LGSTANSVLHYAKCDVLAVR 146 (150)
T ss_dssp HHHHH--TCCGGGEEEEE---SCHHHHHHHHHHHTTCSEEEEEEC--------------CCCHHHHHHHHCSSEEEEEE
T ss_pred HHHHc--CCCcceEEEec---CCHHHHHHHHHHHcCCCEEEEecCCCCCcC-eE-----ecchHHHHHHhCCCCEEEEe
Confidence 54432 222 2233333 378999999999999999999999876554 43 67778999999999997653
No 13
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.67 E-value=8.2e-08 Score=93.16 Aligned_cols=145 Identities=14% Similarity=0.140 Sum_probs=89.8
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchh-hhh--ccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAM-LLM--NDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
-|||+|++..++....++.+..++...+ ..++++|+++........ -.. .... .....+.........++.++.
T Consensus 6 ~~ILv~vD~s~~s~~al~~A~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~ 82 (170)
T 2dum_A 6 RKVLFPTDFSEGAYRAVEVFEKRNKMEV--GEVILLHVIDEGTLEELMDGYSFFYDNA-EIELKDIKEKLKEEASRKLQE 82 (170)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHCCSCC--SEEEEEEEEETTGGGCCC-------------CCTTSHHHHHHHHHHHHHH
T ss_pred ceEEEEecCCHHHHHHHHHHHHHHHhcC--CEEEEEEEecCccccccccccccccccc-cccHHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999988886554 467999998743211000 000 0000 000000000011233444444
Q ss_pred HHHHHHhcCCceeEEE--EEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceE
Q 046529 519 FENYEKTSNNAVNVHT--LTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVC 596 (799)
Q Consensus 519 f~~~~~~~~~~v~v~~--~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVg 596 (799)
+.+..+. .++.++. ..... +..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||+|.
T Consensus 83 ~~~~~~~--~g~~~~~~~~~~~g---~~~~~I~~~a~~~~~DlIV~G~~g~~~~~~~~-----~Gsv~~~vl~~~~~PVl 152 (170)
T 2dum_A 83 KAEEVKR--AFRAKNVRTIIRFG---IPWDEIVKVAEEENVSLIILPSRGKLSLSHEF-----LGSTVMRVLRKTKKPVL 152 (170)
T ss_dssp HHHHHHH--HTTCSEEEEEEEEE---CHHHHHHHHHHHTTCSEEEEESCCCCC--TTC-----CCHHHHHHHHHCSSCEE
T ss_pred HHHHHHH--cCCceeeeeEEecC---ChHHHHHHHHHHcCCCEEEECCCCCCccccce-----echHHHHHHHhCCCCEE
Confidence 4433222 2445554 44333 78999999999999999999999876544433 78889999999999997
Q ss_pred EEE
Q 046529 597 IFV 599 (799)
Q Consensus 597 Ilv 599 (799)
|+-
T Consensus 153 vv~ 155 (170)
T 2dum_A 153 IIK 155 (170)
T ss_dssp EEC
T ss_pred EEc
Confidence 653
No 14
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.63 E-value=8.7e-08 Score=89.46 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=84.6
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFEN 521 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~~ 521 (799)
-|||+|++..++....++.+..++...+ ..++++|+++.... +. ..... .+. .....++.-+.++.
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~--~~-~~~~~------~~~---~~~~~~~~~~~l~~ 68 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHG--ARLIVVHAYEPVPD--YL-GEPFF------EEA---LRRRLERAEGVLEE 68 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEEECC--------------------------CHHHHHHHHHHHH
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcC--CEEEEEEEecCCCc--cc-cccch------HHH---HHHHHHHHHHHHHH
Confidence 3799999999999889988888875444 36799999873211 11 00000 000 01111222233334
Q ss_pred HHHhcCCce-eEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 522 YEKTSNNAV-NVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 522 ~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
+.+. .++ .++..... .+..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||||.|+
T Consensus 69 ~~~~--~g~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~~~~~~~~~~-----~Gs~~~~vl~~~~~pVlvv 136 (137)
T 2z08_A 69 ARAL--TGVPKEDALLLE---GVPAEAILQAARAEKADLIVMGTRGLGALGSLF-----LGSQSQRVVAEAPCPVLLV 136 (137)
T ss_dssp HHHH--HCCCGGGEEEEE---SSHHHHHHHHHHHTTCSEEEEESSCTTCCSCSS-----SCHHHHHHHHHCSSCEEEE
T ss_pred HHHH--cCCCccEEEEEe---cCHHHHHHHHHHHcCCCEEEECCCCCchhhhhh-----hccHHHHHHhcCCCCEEEe
Confidence 4332 223 33333333 378999999999999999999999876544433 7888999999999999654
No 15
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.62 E-value=8.7e-08 Score=92.78 Aligned_cols=137 Identities=10% Similarity=0.106 Sum_probs=89.1
Q ss_pred cceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEE--EEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 441 EFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAV--HLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 441 e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~l--hLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
--|||+|++..+.....++.+..++. .+ ..++++ |+++......+.-.. .. +.........++.++.
T Consensus 17 ~~~ILv~vD~s~~s~~al~~A~~lA~-~~--a~l~ll~a~v~~~~~~~~~~~~~-~~-------~~~~~~~~~~~~~l~~ 85 (163)
T 1tq8_A 17 YKTVVVGTDGSDSSMRAVDRAAQIAG-AD--AKLIIASAYLPQHEDARAADILK-DE-------SYKVTGTAPIYEILHD 85 (163)
T ss_dssp CCEEEEECCSSHHHHHHHHHHHHHHT-TT--SEEEEEEECCC----------------------------CCTHHHHHHH
T ss_pred CCEEEEEcCCCHHHHHHHHHHHHHhC-CC--CEEEEEEeeeccCcccccccccc-cH-------HHHHHHHHHHHHHHHH
Confidence 46899999999999999999888886 54 457899 887644320111000 00 0000112334556665
Q ss_pred HHHHHHhcCCcee-EEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 519 FENYEKTSNNAVN-VHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 519 f~~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
+.+..+. .+++ ++..+... +..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||||.|
T Consensus 86 ~~~~~~~--~gv~~v~~~v~~G---~~~~~I~~~a~~~~~DLIV~G~~g~~~~~~~~-----lGSva~~vl~~a~~PVlv 155 (163)
T 1tq8_A 86 AKERAHN--AGAKNVEERPIVG---APVDALVNLADEEKADLLVVGNVGLSTIAGRL-----LGSVPANVSRRAKVDVLI 155 (163)
T ss_dssp HHHHHHT--TTCCEEEEEEECS---SHHHHHHHHHHHTTCSEEEEECCCCCSHHHHH-----TBBHHHHHHHHTTCEEEE
T ss_pred HHHHHHH--cCCCeEEEEEecC---CHHHHHHHHHHhcCCCEEEECCCCCCccccee-----eccHHHHHHHhCCCCEEE
Confidence 5544433 4566 66665543 78999999999999999999999875543332 677889999999999966
Q ss_pred E
Q 046529 598 F 598 (799)
Q Consensus 598 l 598 (799)
+
T Consensus 156 V 156 (163)
T 1tq8_A 156 V 156 (163)
T ss_dssp E
T ss_pred E
Confidence 5
No 16
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.62 E-value=4.6e-08 Score=93.55 Aligned_cols=137 Identities=11% Similarity=0.094 Sum_probs=91.0
Q ss_pred cceEEEEee--cCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 441 EFRIMACIH--STRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 441 e~riLvcv~--~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
--|||+|++ ..++....++.+..++...+. .++++|+++............ +.........++.++.
T Consensus 15 ~~~ILv~vD~~~s~~s~~al~~a~~la~~~~a--~l~ll~v~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~~ 83 (156)
T 3fg9_A 15 YRRILLTVDEDDNTSSERAFRYATTLAHDYDV--PLGICSVLESEDINIFDSLTP---------SKIQAKRKHVEDVVAE 83 (156)
T ss_dssp CC-EEEECCSCCCHHHHHHHHHHHHHHHHHTC--CEEEEEEECCCCTTCCCSSHH---------HHHHHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCHHHHHHHHHHHHHHHhcCC--EEEEEEEEeCCCccccccCCH---------HHHHHHHHHHHHHHHH
Confidence 358999999 999999999988887765443 579999998653211000000 0000012334555554
Q ss_pred HHHHHHhcCCce-eEEEEEEecCCCChhHHHHHH-HHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceE
Q 046529 519 FENYEKTSNNAV-NVHTLTSVSSHESMHEDICCL-AEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVC 596 (799)
Q Consensus 519 f~~~~~~~~~~v-~v~~~t~vs~~~~m~~dI~~~-A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVg 596 (799)
+.+..+. .++ .++.....+ .+..+.|++. |++.++|+|+||.|++...+ .+ ++++.++|++++||||.
T Consensus 84 ~~~~~~~--~g~~~~~~~v~~~--g~~~~~I~~~~a~~~~~DlIV~G~~g~~~~~-~~-----~Gs~~~~vl~~a~~PVl 153 (156)
T 3fg9_A 84 YVQLAEQ--RGVNQVEPLVYEG--GDVDDVILEQVIPEFKPDLLVTGADTEFPHS-KI-----AGAIGPRLARKAPISVI 153 (156)
T ss_dssp HHHHHHH--HTCSSEEEEEEEC--SCHHHHHHHTHHHHHCCSEEEEETTCCCTTS-SS-----CSCHHHHHHHHCSSEEE
T ss_pred HHHHHHH--cCCCceEEEEEeC--CCHHHHHHHHHHHhcCCCEEEECCCCCCccc-ee-----ecchHHHHHHhCCCCEE
Confidence 4443333 345 366666552 3789999999 99999999999999876554 33 67778999999999986
Q ss_pred EE
Q 046529 597 IF 598 (799)
Q Consensus 597 Il 598 (799)
|+
T Consensus 154 vV 155 (156)
T 3fg9_A 154 VV 155 (156)
T ss_dssp EE
T ss_pred Ee
Confidence 53
No 17
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=98.58 E-value=2.1e-07 Score=90.71 Aligned_cols=148 Identities=11% Similarity=0.102 Sum_probs=84.9
Q ss_pred ceEEEEeecCC---------ChHHHHHHHHhhccCC-CCCceEEEEEEeeccCCcchhhhh-ccCCCCCCCCCCCCCcch
Q 046529 442 FRIMACIHSTR---------NIAGMINLLQVSNATN-QSAIHVFAVHLVEHLGHSTAMLLM-NDGSNSTGFNDSCPMQAT 510 (799)
Q Consensus 442 ~riLvcv~~~~---------~~~~li~Ll~~~~~~~-~sp~~v~~lhLvel~~r~~~~~~~-~~~~~~~~~~~~~~~~~~ 510 (799)
-|||+|++..+ .....++.+..+.... .....++++|+++.......-... .... ....+.......
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 83 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGFDDVDSIYASP--EDFRDMRQSNKA 83 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC----------CCCCSH--HHHHHHTTSHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccccccccccCCH--HHHHHHHHHHHH
Confidence 58999999998 7788888887754322 123578999998643211000000 0000 000000000112
Q ss_pred hhHHHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhcc
Q 046529 511 EAEQFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQN 590 (799)
Q Consensus 511 ~~~~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ 590 (799)
..++.++.+....+. .++.++..+... +..+.|++.|++.++|+|+||.|++....+.+ ++++.++|+++
T Consensus 84 ~~~~~l~~~~~~~~~--~g~~~~~~v~~G---~~~~~I~~~a~~~~~DLIVmG~~g~~~~~~~~-----~Gsva~~vl~~ 153 (175)
T 2gm3_A 84 KGLHLLEFFVNKCHE--IGVGCEAWIKTG---DPKDVICQEVKRVRPDFLVVGSRGLGRFQKVF-----VGTVSAFCVKH 153 (175)
T ss_dssp HHHHHHHHHHHHHHH--HTCEEEEEEEES---CHHHHHHHHHHHHCCSEEEEEECCCC-------------CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCCceEEEEecC---CHHHHHHHHHHHhCCCEEEEeCCCCChhhhhh-----cCchHHHHHhC
Confidence 234455544433222 356666655443 78999999999999999999999876544433 67789999999
Q ss_pred CCCceEEEEcC
Q 046529 591 TPCSVCIFVDR 601 (799)
Q Consensus 591 ApCsVgIlvdR 601 (799)
+||+|.|+-.+
T Consensus 154 a~~pVlvv~~~ 164 (175)
T 2gm3_A 154 AECPVMTIKRN 164 (175)
T ss_dssp CSSCEEEEECC
T ss_pred CCCCEEEEcCC
Confidence 99999776433
No 18
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.52 E-value=2.8e-07 Score=85.88 Aligned_cols=132 Identities=13% Similarity=0.129 Sum_probs=90.4
Q ss_pred eEEEEeecCCChHHHHHHHHhhc-cCCCCCceEEEEEEeeccCCcchhh-hhccCCCCCCCCCCCCCcc-hhhHHHHHHH
Q 046529 443 RIMACIHSTRNIAGMINLLQVSN-ATNQSAIHVFAVHLVEHLGHSTAML-LMNDGSNSTGFNDSCPMQA-TEAEQFKKAF 519 (799)
Q Consensus 443 riLvcv~~~~~~~~li~Ll~~~~-~~~~sp~~v~~lhLvel~~r~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~i~~af 519 (799)
|||+|++..++....++.+..++ ...+ ..++++|+++......... ...+. ..... ...++.++.+
T Consensus 3 ~ILv~~D~s~~s~~al~~a~~la~~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~l~~~ 71 (138)
T 3idf_A 3 KLLFAIDDTEACERAAQYILDMFGKDAD--CTLTLIHVKPEFMLYGEAVLAAYDE---------IEMKEEEKAKLLTQKF 71 (138)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHTTCTT--EEEEEEEEECCCCCCHHHHHHHHHH---------HHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHhccCCC--CEEEEEEEecCCCcccccccCcHHH---------HHHHHHHHHHHHHHHH
Confidence 79999999999999999999888 5544 5689999998654322110 00000 00011 3345555555
Q ss_pred HHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
.+..+. .+++++...... +..+.|++.|+ ++|+|+||.|++...++.+ +++.++|++++||||.|+
T Consensus 72 ~~~~~~--~g~~~~~~v~~g---~~~~~I~~~a~--~~dliV~G~~~~~~~~~~~------Gs~~~~vl~~~~~pVlvv 137 (138)
T 3idf_A 72 STFFTE--KGINPFVVIKEG---EPVEMVLEEAK--DYNLLIIGSSENSFLNKIF------ASHQDDFIQKAPIPVLIV 137 (138)
T ss_dssp HHHHHT--TTCCCEEEEEES---CHHHHHHHHHT--TCSEEEEECCTTSTTSSCC------CCTTCHHHHHCSSCEEEE
T ss_pred HHHHHH--CCCCeEEEEecC---ChHHHHHHHHh--cCCEEEEeCCCcchHHHHh------CcHHHHHHhcCCCCEEEe
Confidence 544443 467777666555 78999999999 9999999999876554443 345689999999998653
No 19
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=98.37 E-value=1.8e-06 Score=80.69 Aligned_cols=131 Identities=8% Similarity=0.052 Sum_probs=82.4
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeec-cCCcchhh--hhccCCCCCCCCCCCCCcchhhHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEH-LGHSTAML--LMNDGSNSTGFNDSCPMQATEAEQFKKA 518 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel-~~r~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~a 518 (799)
-|||+|++..++....++.+..++...+ ..++++|+++- +....... ...+. .+. ...+.++.+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~l-- 69 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHD--AKLSIIHVDVNFSDLYTGLIDVNMSSM------QDR---ISTETQKAL-- 69 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHT--CEEEEEEEEECCGGGCCCCEEHHHHHH------TTC---CCCHHHHHH--
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcC--CEEEEEEEecCchhhhccccccchHHH------HHH---HHHHHHHHH--
Confidence 3799999999999999988888875444 46799999842 22111000 00000 000 012233333
Q ss_pred HHHHHHhcCCceeE-EEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 519 FENYEKTSNNAVNV-HTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 519 f~~~~~~~~~~v~v-~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
+++.+. .++.+ +..... .+..+.|++.|++.++|+|+||.| +...+ .++++.++|++++||||.|
T Consensus 70 -~~~~~~--~~~~~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~-~~~~~-------~lgs~~~~vl~~~~~pVlv 135 (141)
T 1jmv_A 70 -LDLAES--VDYPISEKLSGS---GDLGQVLSDAIEQYDVDLLVTGHH-QDFWS-------KLMSSTRQVMNTIKIDMLV 135 (141)
T ss_dssp -HHHHHH--SSSCCCCEEEEE---ECHHHHHHHHHHHTTCCEEEEEEC-CCCHH-------HHHHHHHHHHTTCCSEEEE
T ss_pred -HHHHHH--cCCCceEEEEec---CCHHHHHHHHHHhcCCCEEEEeCC-Cchhh-------hhcchHHHHHhcCCCCEEE
Confidence 333333 23333 233333 378999999999999999999998 53221 1567889999999999977
Q ss_pred EE
Q 046529 598 FV 599 (799)
Q Consensus 598 lv 599 (799)
+-
T Consensus 136 v~ 137 (141)
T 1jmv_A 136 VP 137 (141)
T ss_dssp EE
T ss_pred ee
Confidence 64
No 20
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=98.29 E-value=2e-06 Score=80.72 Aligned_cols=135 Identities=15% Similarity=0.144 Sum_probs=82.7
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccc--cchhhcHHHHHHHhhhhcCCCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVAR--CTEKQADDEDIYEFKFKTMNDE 697 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~--~~e~~~d~~~l~~~~~~~~~~~ 697 (799)
++|++++.|.++++.|+++|.++|+..+++++++|+.+...... .. .+....+ +..++..++.++++.......
T Consensus 6 ~~ILv~~D~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~- 81 (146)
T 3s3t_A 6 TNILVPVDSSDAAQAAFTEAVNIAQRHQANLTALYVVDDSAYHT--PA-LDPVLSELLDAEAAHAKDAMRQRQQFVATT- 81 (146)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEEECCCCCC--GG-GHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred ceEEEEcCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCccccc--cc-cccccHHHHHHHHHHHHHHHHHHHHHHHhc-
Confidence 39999999999999999999999999999999999986543210 00 0000000 122333445666666554322
Q ss_pred Ce-EEEEEEecChHHHHHHHHh-h--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEE
Q 046529 698 SI-SYIENVVNNGEEIVAAIKD-L--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLV 773 (799)
Q Consensus 698 ~v-~y~E~~v~~~~e~~~~i~~-~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLV 773 (799)
.+ .+... +..|. ....|.+ . +.++||+|+|+++. .++. .--+|...+-+... ++.+|||
T Consensus 82 g~~~~~~~-~~~g~-~~~~I~~~~a~~~~~dliV~G~~~~------~~~~------~~~~Gs~~~~vl~~---~~~pVlv 144 (146)
T 3s3t_A 82 SAPNLKTE-ISYGI-PKHTIEDYAKQHPEIDLIVLGATGT------NSPH------RVAVGSTTSYVVDH---APCNVIV 144 (146)
T ss_dssp SCCCCEEE-EEEEC-HHHHHHHHHHHSTTCCEEEEESCCS------SCTT------TCSSCHHHHHHHHH---CSSEEEE
T ss_pred CCcceEEE-EecCC-hHHHHHHHHHhhcCCCEEEECCCCC------CCcc------eEEEcchHHHHhcc---CCCCEEE
Confidence 22 22212 22232 2333333 2 46799999999864 1233 22478887777764 6679999
Q ss_pred Ee
Q 046529 774 IQ 775 (799)
Q Consensus 774 vq 775 (799)
|.
T Consensus 145 V~ 146 (146)
T 3s3t_A 145 IR 146 (146)
T ss_dssp EC
T ss_pred eC
Confidence 84
No 21
>3idf_A USP-like protein; universal, stress, PSI, MCSG, structural genomics, midwest center for structural genomics structure initiative; 2.00A {Wolinella succinogenes}
Probab=98.27 E-value=9.8e-06 Score=75.25 Aligned_cols=132 Identities=16% Similarity=0.143 Sum_probs=81.1
Q ss_pred ceEEEeccCCcchHHHHHHHHHHh-hCCCeEEEEEEeecCCCCCccccccCCccccc--cchh-hcHHHHHHHhhhhcCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMA-AHPNVKLTVVRFLPGKDPRTVLHQKHNSEVAR--CTEK-QADDEDIYEFKFKTMN 695 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma-~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~--~~e~-~~d~~~l~~~~~~~~~ 695 (799)
++|++++.|.++++.|+++|.++| +..+++++++|+.++.... .. .+....+ +..+ +..++.++++......
T Consensus 2 ~~ILv~~D~s~~s~~al~~a~~la~~~~~a~l~ll~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 77 (138)
T 3idf_A 2 KKLLFAIDDTEACERAAQYILDMFGKDADCTLTLIHVKPEFMLY---GE-AVLAAYDEIEMKEEEKAKLLTQKFSTFFTE 77 (138)
T ss_dssp EEEEEECCSSHHHHHHHHHHHHHHTTCTTEEEEEEEEECCCCCC---HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHhccCCCCEEEEEEEecCCCcc---cc-cccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 499999999999999999999999 9999999999998754321 00 0000000 1111 3344566666655432
Q ss_pred CCCeEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 696 DESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 696 ~~~v~y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
..+.+... +..|. ..+.|.+..+++||+|+|+++.. .|.+.- |...+-+... ++.+||||
T Consensus 78 -~g~~~~~~-v~~g~-~~~~I~~~a~~~dliV~G~~~~~-----------~~~~~~--Gs~~~~vl~~---~~~pVlvv 137 (138)
T 3idf_A 78 -KGINPFVV-IKEGE-PVEMVLEEAKDYNLLIIGSSENS-----------FLNKIF--ASHQDDFIQK---APIPVLIV 137 (138)
T ss_dssp -TTCCCEEE-EEESC-HHHHHHHHHTTCSEEEEECCTTS-----------TTSSCC--CCTTCHHHHH---CSSCEEEE
T ss_pred -CCCCeEEE-EecCC-hHHHHHHHHhcCCEEEEeCCCcc-----------hHHHHh--CcHHHHHHhc---CCCCEEEe
Confidence 22332222 23332 34444444449999999998641 222222 7776666653 56789987
No 22
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=98.26 E-value=2.1e-06 Score=80.70 Aligned_cols=139 Identities=17% Similarity=0.212 Sum_probs=79.1
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCC-CCcccc-ccCC-ccccccchhhcHHHHHHHhhhhcCC-
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKD-PRTVLH-QKHN-SEVARCTEKQADDEDIYEFKFKTMN- 695 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~-~~~~~~-~~~~-~~~~~~~e~~~d~~~l~~~~~~~~~- 695 (799)
+||++++.|.++++.|+++|.++|++.+++++++|+.+... ...... .... .....+..++..++.++++......
T Consensus 3 ~~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 82 (147)
T 3hgm_A 3 NRIMVPVDGSKGAVKALEKGVGLQQLTGAELYILCVFKHHSLLEASLSMARPEQLDIPDDALKDYATEIAVQAKTRATEL 82 (147)
T ss_dssp SEEEEECCSBHHHHHHHHHHHHHHHHHCCEEEEEEEECCHHHHHHTBSSCCCGGGCCCTTHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccccccccccChhhhhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 39999999999999999999999999999999999986432 000000 0000 0000011223344555555543321
Q ss_pred CCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEE
Q 046529 696 DESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLV 773 (799)
Q Consensus 696 ~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLV 773 (799)
+-.+...+..+..|. ..+.|.+. +.++||+|+|+++. .++. .--+|...+-+... ++.+|||
T Consensus 83 g~~~~~~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~------~~~~------~~~~Gs~~~~vl~~---~~~pVlv 146 (147)
T 3hgm_A 83 GVPADKVRAFVKGGR-PSRTIVRFARKRECDLVVIGAQGT------NGDK------SLLLGSVAQRVAGS---AHCPVLV 146 (147)
T ss_dssp TCCGGGEEEEEEESC-HHHHHHHHHHHTTCSEEEECSSCT------TCCS------CCCCCHHHHHHHHH---CSSCEEE
T ss_pred CCCccceEEEEecCC-HHHHHHHHHHHhCCCEEEEeCCCC------cccc------ceeeccHHHHHHhh---CCCCEEE
Confidence 111200112222232 23333333 44799999999864 1222 22478777777764 5678888
Q ss_pred E
Q 046529 774 I 774 (799)
Q Consensus 774 v 774 (799)
|
T Consensus 147 V 147 (147)
T 3hgm_A 147 V 147 (147)
T ss_dssp C
T ss_pred C
Confidence 6
No 23
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=98.26 E-value=2e-06 Score=82.36 Aligned_cols=127 Identities=16% Similarity=0.104 Sum_probs=80.8
Q ss_pred ceEEEeccC-CcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCC-CC
Q 046529 620 QHLLMLFLG-GPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMN-DE 697 (799)
Q Consensus 620 ~~I~v~f~G-G~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~-~~ 697 (799)
++|++++.| .+.++.|+++|.++|+..+++|+++++.++.... . +..++..++.++++.+.... +.
T Consensus 25 ~~ILv~vD~~s~~s~~al~~A~~la~~~~a~l~llhV~~~~~~~----~--------~~~~~~~~~~l~~~~~~~~~~g~ 92 (155)
T 3dlo_A 25 MPIVVAVDKKSDRAERVLRFAAEEARLRGVPVYVVHSLPGGGRT----K--------DEDIIEAKETLSWAVSIIRKEGA 92 (155)
T ss_dssp CCEEEECCSSSHHHHHHHHHHHHHHHHHTCCEEEEEEECCSTTS----C--------HHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEEEECCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEcCCCcc----c--------HHHHHHHHHHHHHHHHHHHhcCC
Confidence 399999999 9999999999999999999999999998654321 1 11222334455554443221 12
Q ss_pred CeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 698 SISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 698 ~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.+.. +..+..|. ..+.|.+. +.++||+|+|+++. .++. .--+|.+.+-+... ++.+||||+
T Consensus 93 ~~~~-~~~v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~------~~~~------~~~lGSv~~~vl~~---a~~PVLvVr 155 (155)
T 3dlo_A 93 EGEE-HLLVRGKE-PPDDIVDFADEVDAIAIVIGIRKR------SPTG------KLIFGSVARDVILK---ANKPVICIK 155 (155)
T ss_dssp CEEE-EEEESSSC-HHHHHHHHHHHTTCSEEEEECCEE------CTTS------CEECCHHHHHHHHH---CSSCEEEEC
T ss_pred CceE-EEEecCCC-HHHHHHHHHHHcCCCEEEECCCCC------CCCC------CEEeccHHHHHHHh---CCCCEEEeC
Confidence 2332 22343332 23333333 34799999999864 1233 22478888777764 677999984
No 24
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=98.14 E-value=1.1e-05 Score=75.31 Aligned_cols=134 Identities=16% Similarity=0.140 Sum_probs=77.1
Q ss_pred ceEEEeccCCcc--hHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCcc--ccc-cchhhcHHHHHHHhhhhcC
Q 046529 620 QHLLMLFLGGPD--DREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSE--VAR-CTEKQADDEDIYEFKFKTM 694 (799)
Q Consensus 620 ~~I~v~f~GG~d--dreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~--~~~-~~e~~~d~~~l~~~~~~~~ 694 (799)
++|++++.|.++ ++.|+++|.++|+..+++++++|+.++.... ........ ... +...+.-.+.++++..+..
T Consensus 2 k~ILv~vD~s~~~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 79 (143)
T 3fdx_A 2 NAILVPIDISDKEFTERIISHVESEARIDDAEVHFLTVIPSLPYY--ASLGMAYTAELPGMDELREGSETQLKEIAKKFS 79 (143)
T ss_dssp CEEEEECCTTCSSCCTTHHHHHHHHHHHHTCEEEEEEEECC------------------CHHHHHHHHHHHHHHHHTTSC
T ss_pred CEEEEEecCChHhhHHHHHHHHHHHHHhcCCeEEEEEEecCCccc--ccccccccchhhhHHHHHHHHHHHHHHHHHHcC
Confidence 499999999999 9999999999999999999999998653210 00000000 000 1111222233444444332
Q ss_pred CC-CCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeE
Q 046529 695 ND-ESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASV 771 (799)
Q Consensus 695 ~~-~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~Sv 771 (799)
.. .++.+. +..| +..+.|.+. +.++||+|+|+++. |+. ..-+|...+-+... ++.+|
T Consensus 80 ~~~~~v~~~---~~~g-~~~~~I~~~a~~~~~dliV~G~~~~-------~~~------~~~~Gs~~~~v~~~---~~~pV 139 (143)
T 3fdx_A 80 IPEDRMHFH---VAEG-SPKDKILALAKSLPADLVIIASHRP-------DIT------TYLLGSNAAAVVRH---AECSV 139 (143)
T ss_dssp CCGGGEEEE---EEES-CHHHHHHHHHHHTTCSEEEEESSCT-------TCC------SCSSCHHHHHHHHH---CSSEE
T ss_pred CCCCceEEE---EEec-ChHHHHHHHHHHhCCCEEEEeCCCC-------CCe------eeeeccHHHHHHHh---CCCCE
Confidence 11 123222 2233 233333333 34799999999842 233 22478888877764 67799
Q ss_pred EEEe
Q 046529 772 LVIQ 775 (799)
Q Consensus 772 LVvq 775 (799)
|||.
T Consensus 140 lvv~ 143 (143)
T 3fdx_A 140 LVVR 143 (143)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9973
No 25
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=98.14 E-value=8.4e-06 Score=75.75 Aligned_cols=133 Identities=19% Similarity=0.152 Sum_probs=79.4
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCe
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESI 699 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v 699 (799)
++|++++.|.++++.|+++|.++|+..+++++++|+.++.... ... ....-..+..++..++.++++..+ .+-..+
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~-~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~ 78 (137)
T 2z08_A 3 KTILLAYDGSEHARRAAEVAKAEAEAHGARLIVVHAYEPVPDY--LGE-PFFEEALRRRLERAEGVLEEARAL-TGVPKE 78 (137)
T ss_dssp SEEEEECCSSHHHHHHHHHHHHHHHHHTCEEEEEEEECC-----------------CHHHHHHHHHHHHHHHH-HCCCGG
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEecCCCcc--ccc-cchHHHHHHHHHHHHHHHHHHHHH-cCCCcc
Confidence 3999999999999999999999999999999999998642210 000 000000011123344566666554 111033
Q ss_pred EEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEEe
Q 046529 700 SYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVIQ 775 (799)
Q Consensus 700 ~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVvq 775 (799)
.+. +..|. ....|.+. +.++||+|+|+++.. ++. .--+|...+-+... ++.+||||.
T Consensus 79 ~~~---~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~------~~~------~~~~Gs~~~~vl~~---~~~pVlvv~ 137 (137)
T 2z08_A 79 DAL---LLEGV-PAEAILQAARAEKADLIVMGTRGLG------ALG------SLFLGSQSQRVVAE---APCPVLLVR 137 (137)
T ss_dssp GEE---EEESS-HHHHHHHHHHHTTCSEEEEESSCTT------CCS------CSSSCHHHHHHHHH---CSSCEEEEC
T ss_pred EEE---EEecC-HHHHHHHHHHHcCCCEEEECCCCCc------hhh------hhhhccHHHHHHhc---CCCCEEEeC
Confidence 332 22232 33333333 347999999998741 233 22478888877764 667999973
No 26
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=98.13 E-value=6.1e-06 Score=76.74 Aligned_cols=130 Identities=6% Similarity=-0.065 Sum_probs=79.6
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEe-ec-cCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLV-EH-LGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLv-el-~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
-|||+|++..+.....++.+..++...+ ..++++|++ +. +.. ... ..... ....+.........++.++.+
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~-~~~-~~~~~---~~~~~~~~~~~~~~~~~l~~~ 77 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLG--AELDILAVLEDVYNLE-RAN-VTFGL---PFPPEIKEESKKRIERRLREV 77 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTC--CEEEEEEECHHHHHHH-HHH-HHHCC---CCCTHHHHHHHHHHHHHHHHH
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcC--CeEEEEEEeccccccc-ccc-cccCC---CCChHHHHHHHHHHHHHHHHH
Confidence 4899999999999999999888886544 467999998 63 110 000 00000 000000000112233444433
Q ss_pred HHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEE
Q 046529 520 ENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCI 597 (799)
Q Consensus 520 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgI 597 (799)
+.+. ....+ .++..+.. .+..+.|++.|++.++|+|+||.|++ ++.++|++++||||.|
T Consensus 78 ~~~~-~~~~~-~~~~~~~~---g~~~~~I~~~a~~~~~dliV~G~~g~--------------sv~~~vl~~a~~PVlv 136 (138)
T 1q77_A 78 WEKL-TGSTE-IPGVEYRI---GPLSEEVKKFVEGKGYELVVWACYPS--------------AYLCKVIDGLNLASLI 136 (138)
T ss_dssp HHHH-HSCCC-CCCEEEEC---SCHHHHHHHHHTTSCCSEEEECSCCG--------------GGTHHHHHHSSSEEEE
T ss_pred HHHh-hccCC-cceEEEEc---CCHHHHHHHHHHhcCCCEEEEeCCCC--------------chHHHHHHhCCCceEe
Confidence 2210 11123 44444433 47899999999999999999998865 2357999999999865
No 27
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=98.11 E-value=1.1e-05 Score=76.11 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=78.4
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCC-cc--ccc--cchhhcHHHHHHHhhhhcC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHN-SE--VAR--CTEKQADDEDIYEFKFKTM 694 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~-~~--~~~--~~e~~~d~~~l~~~~~~~~ 694 (799)
++|++++.|.++++.|+++|.++|+..+++|+++|+.++.... .....+ .. ..+ +..++..++.++++..+..
T Consensus 7 ~~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 84 (150)
T 3tnj_A 7 HHILLAVDFSSEDSQVVQKVRNLASQIGARLSLIHVLDNIPMP--DTPYGTAIPLDTETTYDAMLDVEKQKLSQIGNTLG 84 (150)
T ss_dssp SEEEEECCCSTTHHHHHHHHHHHHHHHTCEEEEEEEEC----------CTTCCCSSSCCCHHHHHHHHHHHHHHHHHHHT
T ss_pred ceEEEEeCCCHHHHHHHHHHHHHHhhcCCEEEEEEEEcCcccc--ccccccccCcCHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 3999999999999999999999999999999999998653210 000000 00 000 2222334456666665542
Q ss_pred CCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEE
Q 046529 695 NDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVL 772 (799)
Q Consensus 695 ~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvL 772 (799)
. ..+.+ .+..|. ..+.|.+. +.++||+|+|+++.. .|. --+|...+-+... ++++||
T Consensus 85 ~-~~~~~---~~~~g~-~~~~I~~~a~~~~~dliV~G~~~~~-----------~~~--~~~Gs~~~~vl~~---~~~pVl 143 (150)
T 3tnj_A 85 I-DPAHR---WLVWGE-PREEIIRIAEQENVDLIVVGSHGRH-----------GLA--LLLGSTANSVLHY---AKCDVL 143 (150)
T ss_dssp C-CGGGE---EEEESC-HHHHHHHHHHHTTCSEEEEEEC---------------------CCCHHHHHHHH---CSSEEE
T ss_pred C-CcceE---EEecCC-HHHHHHHHHHHcCCCEEEEecCCCC-----------CcC--eEecchHHHHHHh---CCCCEE
Confidence 1 21222 222221 22333333 347999999998642 333 3578888777764 668999
Q ss_pred EEeee
Q 046529 773 VIQQY 777 (799)
Q Consensus 773 Vvqq~ 777 (799)
||...
T Consensus 144 vv~~~ 148 (150)
T 3tnj_A 144 AVRLR 148 (150)
T ss_dssp EEECC
T ss_pred EEeCC
Confidence 99753
No 28
>3mt0_A Uncharacterized protein PA1789; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 1.58A {Pseudomonas aeruginosa}
Probab=98.11 E-value=3.9e-06 Score=88.80 Aligned_cols=137 Identities=12% Similarity=0.076 Sum_probs=86.7
Q ss_pred ccceEEEEeecCCC-------hHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhh
Q 046529 440 AEFRIMACIHSTRN-------IAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEA 512 (799)
Q Consensus 440 ~e~riLvcv~~~~~-------~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (799)
..-|||+|++..++ ....++.+..++...+ ..++++|+++....... .. +. .......
T Consensus 133 ~~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~--a~l~ll~v~~~~~~~~~-----~~-------~~-~~~~~~~ 197 (290)
T 3mt0_A 133 TGGKILAAVDVGNNDGEHRSLHAGIISHAYDIAGLAK--ATLHVISAHPSPMLSSA-----DP-------TF-QLSETIE 197 (290)
T ss_dssp TTCEEEEEECTTCCSHHHHHHHHHHHHHHHHHHHHTT--CEEEEEEEEC---------------------CH-HHHHHHH
T ss_pred CCCeEEEEECCCCcchhhhHHHHHHHHHHHHHHHHcC--CeEEEEEEecCcccccc-----Cc-------hh-HHHHHHH
Confidence 34689999999988 6778888777765444 46799999885443210 00 00 0001112
Q ss_pred HHHHHHHHHHHHhcCCcee-EEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccC
Q 046529 513 EQFKKAFENYEKTSNNAVN-VHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNT 591 (799)
Q Consensus 513 ~~i~~af~~~~~~~~~~v~-v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~A 591 (799)
++..+.++.+.+.. ++. ++..... .+..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++
T Consensus 198 ~~~~~~l~~~~~~~--g~~~~~~~v~~---g~~~~~I~~~a~~~~~dLiVmG~~g~~~~~~~~-----~Gsv~~~vl~~~ 267 (290)
T 3mt0_A 198 ARYREACRTFQAEY--GFSDEQLHIEE---GPADVLIPRTAQKLDAVVTVIGTVARTGLSGAL-----IGNTAEVVLDTL 267 (290)
T ss_dssp HHHHHHHHHHHHHH--TCCTTTEEEEE---SCHHHHHHHHHHHHTCSEEEEECCSSCCGGGCC-----SCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHc--CCCcceEEEec---cCHHHHHHHHHHhcCCCEEEECCCCCcCCccee-----cchHHHHHHhcC
Confidence 22333444444431 221 2222222 378999999999999999999999887665544 788899999999
Q ss_pred CCceEEEEcC
Q 046529 592 PCSVCIFVDR 601 (799)
Q Consensus 592 pCsVgIlvdR 601 (799)
||||.|+-.+
T Consensus 268 ~~pVLvv~~~ 277 (290)
T 3mt0_A 268 ESDVLVLKPD 277 (290)
T ss_dssp SSEEEEECCH
T ss_pred CCCEEEECCC
Confidence 9999766433
No 29
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=98.05 E-value=7.3e-06 Score=78.02 Aligned_cols=133 Identities=18% Similarity=0.213 Sum_probs=80.9
Q ss_pred ceEEEecc--CCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccc-cccchhhcHHHHHHHhhhhcCCC
Q 046529 620 QHLLMLFL--GGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEV-ARCTEKQADDEDIYEFKFKTMND 696 (799)
Q Consensus 620 ~~I~v~f~--GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~-~~~~e~~~d~~~l~~~~~~~~~~ 696 (799)
++|++++. |.++++.|+++|.++|+..+++++++|+.+..... .. .+... ..+..++..++.++++.......
T Consensus 16 ~~ILv~vD~~~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~---~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 91 (156)
T 3fg9_A 16 RRILLTVDEDDNTSSERAFRYATTLAHDYDVPLGICSVLESEDIN---IF-DSLTPSKIQAKRKHVEDVVAEYVQLAEQR 91 (156)
T ss_dssp C-EEEECCSCCCHHHHHHHHHHHHHHHHHTCCEEEEEEECCCCTT---CC-CSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCHHHHHHHHHHHHHHHhcCCEEEEEEEEeCCCcc---cc-ccCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 39999999 99999999999999999999999999998654320 00 00100 00122233445566654433211
Q ss_pred C--CeEEEEEEecChHHHHHHHHhh---cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeE
Q 046529 697 E--SISYIENVVNNGEEIVAAIKDL---SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASV 771 (799)
Q Consensus 697 ~--~v~y~E~~v~~~~e~~~~i~~~---~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~Sv 771 (799)
+ .+.+. +..+|. ....|.+. +.++||+|+|+++.. .+. . -+|...+-+... ++++|
T Consensus 92 g~~~~~~~--v~~~g~-~~~~I~~~~a~~~~~DlIV~G~~g~~-----------~~~-~-~~Gs~~~~vl~~---a~~PV 152 (156)
T 3fg9_A 92 GVNQVEPL--VYEGGD-VDDVILEQVIPEFKPDLLVTGADTEF-----------PHS-K-IAGAIGPRLARK---APISV 152 (156)
T ss_dssp TCSSEEEE--EEECSC-HHHHHHHTHHHHHCCSEEEEETTCCC-----------TTS-S-SCSCHHHHHHHH---CSSEE
T ss_pred CCCceEEE--EEeCCC-HHHHHHHHHHHhcCCCEEEECCCCCC-----------ccc-e-eecchHHHHHHh---CCCCE
Confidence 1 23222 222132 22333322 467999999998652 332 3 588888888764 67799
Q ss_pred EEEe
Q 046529 772 LVIQ 775 (799)
Q Consensus 772 LVvq 775 (799)
|||.
T Consensus 153 lvV~ 156 (156)
T 3fg9_A 153 IVVR 156 (156)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9983
No 30
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=98.05 E-value=2e-05 Score=75.44 Aligned_cols=138 Identities=12% Similarity=0.101 Sum_probs=81.6
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCC-----CCCccccccCCc-cc-----cc--cchhhcHHHHHH
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGK-----DPRTVLHQKHNS-EV-----AR--CTEKQADDEDIY 687 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~-----~~~~~~~~~~~~-~~-----~~--~~e~~~d~~~l~ 687 (799)
+|++++.|.++++.|+++|.++|+..+++++++|+.++. .......+..++ +. .+ +..++..++.++
T Consensus 7 ~ILv~vD~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (162)
T 1mjh_A 7 KILYPTDFSETAEIALKHVKAFKTLKAEEVILLHVIDEREIKKRDIFSLLLGVAGLNKSVEEFENELKNKLTEEAKNKME 86 (162)
T ss_dssp EEEEECCSCHHHHHHHHHHHHTCCSSCCEEEEEEEEEGGGTC-----------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCCHHHHHHHHHHHHHHhhcCCeEEEEEEecCccccccccccccccccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998643 100000000000 00 00 111233345566
Q ss_pred HhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCC
Q 046529 688 EFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNF 765 (799)
Q Consensus 688 ~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~ 765 (799)
++...... ..+.+... +..| +..+.|.+. +.++||+|+|+++. .++. .--+|-+.+-+...
T Consensus 87 ~~~~~~~~-~g~~~~~~-v~~G-~~~~~I~~~a~~~~~dlIV~G~~g~------~~~~------~~~~GSv~~~vl~~-- 149 (162)
T 1mjh_A 87 NIKKELED-VGFKVKDI-IVVG-IPHEEIVKIAEDEGVDIIIMGSHGK------TNLK------EILLGSVTENVIKK-- 149 (162)
T ss_dssp HHHHHHHH-TTCEEEEE-EEEE-CHHHHHHHHHHHTTCSEEEEESCCS------SCCT------TCSSCHHHHHHHHH--
T ss_pred HHHHHHHH-cCCceEEE-EcCC-CHHHHHHHHHHHcCCCEEEEcCCCC------CCcc------ceEecchHHHHHHh--
Confidence 66544321 12333222 2223 233333333 34799999999864 2333 22478888888764
Q ss_pred CcceeEEEEee
Q 046529 766 SLHASVLVIQQ 776 (799)
Q Consensus 766 ~~~~SvLVvqq 776 (799)
++++||||..
T Consensus 150 -~~~pVlvv~~ 159 (162)
T 1mjh_A 150 -SNKPVLVVKR 159 (162)
T ss_dssp -CCSCEEEECC
T ss_pred -CCCCEEEEeC
Confidence 5689999964
No 31
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=98.04 E-value=1.7e-05 Score=76.52 Aligned_cols=138 Identities=13% Similarity=0.045 Sum_probs=81.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCc---------cccc--cchhhcHHHHHHHh
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNS---------EVAR--CTEKQADDEDIYEF 689 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~---------~~~~--~~e~~~d~~~l~~~ 689 (799)
+|++++.|.++++.|+++|.++|+..+++|+++|+.++.... ....++ ...+ +..++..++.++++
T Consensus 7 ~ILv~vD~s~~s~~al~~A~~la~~~~a~l~ll~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 83 (170)
T 2dum_A 7 KVLFPTDFSEGAYRAVEVFEKRNKMEVGEVILLHVIDEGTLE---ELMDGYSFFYDNAEIELKDIKEKLKEEASRKLQEK 83 (170)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHCCSCCSEEEEEEEEETTGGG---CCC------------CCTTSHHHHHHHHHHHHHHH
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHhcCCEEEEEEEecCcccc---ccccccccccccccccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998543210 000000 0000 11122334455555
Q ss_pred hhhcCC-CCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCC
Q 046529 690 KFKTMN-DESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFS 766 (799)
Q Consensus 690 ~~~~~~-~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~ 766 (799)
...... +-.+.+. ..+..|. ....|.+. +.++||+|+|+++.. ++. .--+|.+.+-+...
T Consensus 84 ~~~~~~~g~~~~~~-~~~~~g~-~~~~I~~~a~~~~~DlIV~G~~g~~------~~~------~~~~Gsv~~~vl~~--- 146 (170)
T 2dum_A 84 AEEVKRAFRAKNVR-TIIRFGI-PWDEIVKVAEEENVSLIILPSRGKL------SLS------HEFLGSTVMRVLRK--- 146 (170)
T ss_dssp HHHHHHHTTCSEEE-EEEEEEC-HHHHHHHHHHHTTCSEEEEESCCCC------C--------TTCCCHHHHHHHHH---
T ss_pred HHHHHHcCCceeee-eEEecCC-hHHHHHHHHHHcCCCEEEECCCCCC------ccc------cceechHHHHHHHh---
Confidence 543211 1233331 1222232 33333333 347999999998651 233 23478888877764
Q ss_pred cceeEEEEeeec
Q 046529 767 LHASVLVIQQYI 778 (799)
Q Consensus 767 ~~~SvLVvqq~~ 778 (799)
++.+||||....
T Consensus 147 ~~~PVlvv~~~~ 158 (170)
T 2dum_A 147 TKKPVLIIKEVD 158 (170)
T ss_dssp CSSCEEEECCCC
T ss_pred CCCCEEEEccCC
Confidence 668999997543
No 32
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=98.01 E-value=1.7e-05 Score=76.46 Aligned_cols=135 Identities=17% Similarity=0.173 Sum_probs=78.7
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEE--EeecCCCC-CccccccCCccccccchhhcHHHHHHHhhhhcCCCC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVV--RFLPGKDP-RTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDE 697 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvv--r~~~~~~~-~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~ 697 (799)
+|++++.|.+.++.|+++|.++|+ .+.+++++ ++++.... . ......-... +..++..++.++++...... .
T Consensus 19 ~ILv~vD~s~~s~~al~~A~~lA~-~~a~l~ll~a~v~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~-~ 93 (163)
T 1tq8_A 19 TVVVGTDGSDSSMRAVDRAAQIAG-ADAKLIIASAYLPQHEDARA--ADILKDESYK-VTGTAPIYEILHDAKERAHN-A 93 (163)
T ss_dssp EEEEECCSSHHHHHHHHHHHHHHT-TTSEEEEEEECCC-----------------------CCTHHHHHHHHHHHHHT-T
T ss_pred EEEEEcCCCHHHHHHHHHHHHHhC-CCCEEEEEEeeeccCccccc--ccccccHHHH-HHHHHHHHHHHHHHHHHHHH-c
Confidence 999999999999999999999999 99999999 88753221 0 0000000000 11223344556665554322 1
Q ss_pred CeE-EEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 698 SIS-YIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 698 ~v~-y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
.+. +.-. +..|. ..+.|.+. +.++||+|+|+++.. ++. ..-+|-+.+-+... ++++||||
T Consensus 94 gv~~v~~~-v~~G~-~~~~I~~~a~~~~~DLIV~G~~g~~------~~~------~~~lGSva~~vl~~---a~~PVlvV 156 (163)
T 1tq8_A 94 GAKNVEER-PIVGA-PVDALVNLADEEKADLLVVGNVGLS------TIA------GRLLGSVPANVSRR---AKVDVLIV 156 (163)
T ss_dssp TCCEEEEE-EECSS-HHHHHHHHHHHTTCSEEEEECCCCC------SHH------HHHTBBHHHHHHHH---TTCEEEEE
T ss_pred CCCeEEEE-EecCC-HHHHHHHHHHhcCCCEEEECCCCCC------ccc------ceeeccHHHHHHHh---CCCCEEEE
Confidence 232 2222 32332 33333332 467999999998652 222 22378888877764 56899999
Q ss_pred eee
Q 046529 775 QQY 777 (799)
Q Consensus 775 qq~ 777 (799)
...
T Consensus 157 ~~~ 159 (163)
T 1tq8_A 157 HTT 159 (163)
T ss_dssp CCC
T ss_pred eCC
Confidence 754
No 33
>3olq_A Universal stress protein E; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: UNL; 1.82A {Proteus mirabilis}
Probab=97.98 E-value=1.1e-05 Score=86.36 Aligned_cols=147 Identities=10% Similarity=0.019 Sum_probs=89.9
Q ss_pred cceEEEEeecCCC-------hHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhH
Q 046529 441 EFRIMACIHSTRN-------IAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAE 513 (799)
Q Consensus 441 e~riLvcv~~~~~-------~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (799)
.-|||+|++..+. ....++.+..++........++++|+.+........ ... ..+.........+
T Consensus 156 ~~~Ilva~D~s~~~~~~~~~s~~al~~a~~la~~~~~~a~l~ll~v~~~~~~~~~~---~~~-----~~~~~~~~~~~~~ 227 (319)
T 3olq_A 156 YGTIVVAANLSNEESYHDALNLKLIELTNDLSHRIQKDPDVHLLSAYPVAPINIAI---ELP-----DFDPNLYNNALRG 227 (319)
T ss_dssp TCEEEEECCCSCCSTHHHHHHHHHHHHHHHHHHHHCSSCCEEEEEEECCCSCSCCT---TCT-----TCCHHHHHHHHHH
T ss_pred CCeEEEEECCCCcchhHHHHHHHHHHHHHHHHHhccCCCeEEEEEeecCcchhhhc---cCC-----cccHHHHHHHHHH
Confidence 4689999998884 356666666655433001357999999865432110 000 0000000111223
Q ss_pred HHHHHHHHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCC
Q 046529 514 QFKKAFENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPC 593 (799)
Q Consensus 514 ~i~~af~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApC 593 (799)
+..+.++.+.+..+.. .++....- .+..+.|++.|++.++|+|+||.|++....+.+ ++++.++|++++||
T Consensus 228 ~~~~~l~~~~~~~~~~-~~~~~v~~---g~~~~~I~~~a~~~~~dLiV~G~~g~~~~~~~~-----~Gsv~~~vl~~~~~ 298 (319)
T 3olq_A 228 QHLIAMKELRQKFSIP-EEKTHVKE---GLPEQVIPQVCEELNAGIVVLGILGRTGLSAAF-----LGNTAEQLIDHIKC 298 (319)
T ss_dssp HHHHHHHHHHHHTTCC-GGGEEEEE---SCHHHHHHHHHHHTTEEEEEEECCSCCSTHHHH-----HHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHhCCC-cccEEEec---CCcHHHHHHHHHHhCCCEEEEeccCccCCcccc-----ccHHHHHHHhhCCC
Confidence 3344555555442211 12222222 377999999999999999999999876655443 78999999999999
Q ss_pred ceEEEEcCCCC
Q 046529 594 SVCIFVDRGLG 604 (799)
Q Consensus 594 sVgIlvdRg~~ 604 (799)
+|.|+-.+|+.
T Consensus 299 pVLvv~~~~~~ 309 (319)
T 3olq_A 299 DLLAIKPDGFT 309 (319)
T ss_dssp EEEEECCTTCC
T ss_pred CEEEECCCCCC
Confidence 99877666543
No 34
>3loq_A Universal stress protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: AMP; 2.32A {Archaeoglobus fulgidus}
Probab=97.96 E-value=1.8e-05 Score=83.81 Aligned_cols=120 Identities=11% Similarity=0.102 Sum_probs=86.7
Q ss_pred ccceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHH
Q 046529 440 AEFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAF 519 (799)
Q Consensus 440 ~e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af 519 (799)
..-||++|++..+.....++.+..++...+ ..++++|+.+... .++.++.+
T Consensus 169 ~~~~Ilv~~d~s~~s~~al~~a~~la~~~~--~~l~ll~v~~~~~---------------------------~~~~l~~~ 219 (294)
T 3loq_A 169 LFDRVLVAYDFSKWADRALEYAKFVVKKTG--GELHIIHVSEDGD---------------------------KTADLRVM 219 (294)
T ss_dssp TTSEEEEECCSSHHHHHHHHHHHHHHHHHT--CEEEEEEECSSSC---------------------------CHHHHHHH
T ss_pred cCCEEEEEECCCHHHHHHHHHHHHHhhhcC--CEEEEEEEccCch---------------------------HHHHHHHH
Confidence 346899999999888888888887775444 3579999975322 12233333
Q ss_pred HHHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 520 ENYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 520 ~~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
.++-+. .++.++....- .+..+.|++.|++.++|+|+||.+++....+.+ ++++.++|++++||||.|+
T Consensus 220 ~~~l~~--~~~~~~~~~~~---g~~~~~I~~~a~~~~~dLlV~G~~~~~~~~~~~-----~Gs~~~~vl~~~~~pvLvv 288 (294)
T 3loq_A 220 EEVIGA--EGIEVHVHIES---GTPHKAILAKREEINATTIFMGSRGAGSVMTMI-----LGSTSESVIRRSPVPVFVC 288 (294)
T ss_dssp HHHHHH--TTCCEEEEEEC---SCHHHHHHHHHHHTTCSEEEEECCCCSCHHHHH-----HHCHHHHHHHHCSSCEEEE
T ss_pred HHHHHH--cCCcEEEEEec---CCHHHHHHHHHHhcCcCEEEEeCCCCCCcccee-----eCcHHHHHHhcCCCCEEEE
Confidence 333333 34556554433 489999999999999999999999876544433 7788999999999999665
No 35
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=97.88 E-value=4.3e-05 Score=71.10 Aligned_cols=132 Identities=15% Similarity=0.160 Sum_probs=77.7
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC-CCCCccccccCCccccc--cchhhcHHHHHHHhhhhcCCC
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG-KDPRTVLHQKHNSEVAR--CTEKQADDEDIYEFKFKTMND 696 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~-~~~~~~~~~~~~~~~~~--~~e~~~d~~~l~~~~~~~~~~ 696 (799)
++|++++.|.++++.|+++|.++|+..+++++++|+.++ ..... ... .....+ +..++.-++.++++..+...
T Consensus 3 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~- 78 (141)
T 1jmv_A 3 KHILVAVDLSEESPILLKKAVGIAKRHDAKLSIIHVDVNFSDLYT-GLI--DVNMSSMQDRISTETQKALLDLAESVDY- 78 (141)
T ss_dssp SEEEEEECCSTTHHHHHHHHHHHHHHHTCEEEEEEEEECCGGGCC-CCE--EHHHHHHTTCCCCHHHHHHHHHHHHSSS-
T ss_pred ceEEEEecCchhhHHHHHHHHHHHHhcCCEEEEEEEecCchhhhc-ccc--ccchHHHHHHHHHHHHHHHHHHHHHcCC-
Confidence 399999999999999999999999999999999999843 11000 000 000000 11122234566666554321
Q ss_pred CCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcceeEEEE
Q 046529 697 ESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLHASVLVI 774 (799)
Q Consensus 697 ~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~~SvLVv 774 (799)
.+ .+..+..|. ..+.|.+. ..++||+|+|++ .. ++. .+|-..+-+... ++.+||||
T Consensus 79 -~~--~~~~~~~g~-~~~~I~~~a~~~~~dliV~G~~-~~------~~~--------~lgs~~~~vl~~---~~~pVlvv 136 (141)
T 1jmv_A 79 -PI--SEKLSGSGD-LGQVLSDAIEQYDVDLLVTGHH-QD------FWS--------KLMSSTRQVMNT---IKIDMLVV 136 (141)
T ss_dssp -CC--CCEEEEEEC-HHHHHHHHHHHTTCCEEEEEEC-CC------CHH--------HHHHHHHHHHTT---CCSEEEEE
T ss_pred -Cc--eEEEEecCC-HHHHHHHHHHhcCCCEEEEeCC-Cc------hhh--------hhcchHHHHHhc---CCCCEEEe
Confidence 11 111222221 22222222 456999999998 41 222 267777777753 67899999
Q ss_pred eee
Q 046529 775 QQY 777 (799)
Q Consensus 775 qq~ 777 (799)
...
T Consensus 137 ~~~ 139 (141)
T 1jmv_A 137 PLR 139 (141)
T ss_dssp ECC
T ss_pred eCC
Confidence 753
No 36
>3ab8_A Putative uncharacterized protein TTHA0350; tandem-type universal stress protein, unknown function; HET: ATP; 1.70A {Thermus thermophilus} PDB: 3ab7_A*
Probab=97.70 E-value=5.3e-05 Score=78.82 Aligned_cols=139 Identities=18% Similarity=0.173 Sum_probs=82.8
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCcc-cc----------ccchhhcHHHHHHH
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSE-VA----------RCTEKQADDEDIYE 688 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~-~~----------~~~e~~~d~~~l~~ 688 (799)
++|++++.|.+.++.|+++|.++|+..+++++++|+.+..... .....+.. .. .+..++..++.+++
T Consensus 1 k~ILv~vD~s~~s~~al~~A~~lA~~~~a~l~ll~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 78 (268)
T 3ab8_A 1 MRILLATDGSPQARGAEALAEWLAYKLSAPLTVLFVVDTRLAR--IPELLDFGALTVPVPVLRTELERALALRGEAVLER 78 (268)
T ss_dssp CCEEEECCSCGGGHHHHHHHHHHHHHHTCCEEEEEEEEHHHHT--HHHHC-------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEEcCCCHHHHHHHHHHHHHHHHhCCcEEEEEEeccCCcc--cccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999997532100 00000000 00 01112223455666
Q ss_pred hhhhcCCCCCeEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhhhhcCCCCcc
Q 046529 689 FKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSVLAMSNFSLH 768 (799)
Q Consensus 689 ~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~Las~d~~~~ 768 (799)
+...... ..+.+.-. +..|. ..+.|.+.+.++||+|+|+++.. .++. ..-+|...+-++.. ++
T Consensus 79 ~~~~~~~-~g~~~~~~-~~~g~-~~~~I~~~~~~~dliV~G~~g~~-----~~~~------~~~~Gs~~~~v~~~---a~ 141 (268)
T 3ab8_A 79 VRQSALA-AGVAVEAV-LEEGV-PHEAILRRARAADLLVLGRSGEA-----HGDG------FGGLGSTADRVLRA---SP 141 (268)
T ss_dssp HHHHHHH-TTCCEEEE-EEEEC-HHHHHHHHHTTCSEEEEESSCTT-----SCTT------CCSCCHHHHHHHHH---CS
T ss_pred HHHHHHh-CCCCeEEE-EecCC-HHHHHHhhccCCCEEEEeccCCC-----cccc------ccccchhHHHHHHh---CC
Confidence 5543221 11222222 22332 33444444788999999998641 0333 23478888888764 67
Q ss_pred eeEEEEeee
Q 046529 769 ASVLVIQQY 777 (799)
Q Consensus 769 ~SvLVvqq~ 777 (799)
++||||...
T Consensus 142 ~PVlvv~~~ 150 (268)
T 3ab8_A 142 VPVLLAPGE 150 (268)
T ss_dssp SCEEEECSS
T ss_pred CCEEEECCC
Confidence 899999864
No 37
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.68 E-value=0.013 Score=62.91 Aligned_cols=110 Identities=15% Similarity=0.099 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHHHHHHhhccChHHHHhcCCCch---hhHHHHHHHH-HHHHHHHHHHHHHhcCcchhhhhhHHHHHHHHH
Q 046529 88 LETYAYIALLFYLFLIGLDMDINLISATGMTNK---VVSIALAGTL-VPMAVGLGAFFLVIGESQEFITQGGYMFCAVAL 163 (799)
Q Consensus 88 l~~la~lGli~~lFl~Gle~d~~~l~~~~~~~~---~~~ia~~~~l-ip~~~g~~~~~~l~~~~~~~~~~~~~l~l~~~l 163 (799)
++......+.+.||..|++++++++++.. ++ .....+..++ .|+ ++++++..+..++ . .....+.++++=
T Consensus 41 ~~~~i~~~l~~~mf~~G~~l~~~~l~~~~--~~~~~~~~~l~~~~vi~Pl-l~~~l~~~~~l~~--~-~~~Glil~~~~P 114 (332)
T 3zux_A 41 AGPYIPWLLGIIMFGMGLTLKPSDFDILF--KHPKVVIIGVIAQFAIMPA-TAWCLSKLLNLPA--E-IAVGVILVGCCP 114 (332)
T ss_dssp GGGGHHHHHHHHHHHHHHHCCGGGGHHHH--HSHHHHHHHHHHHHHHHHH-HHHHHHHHTTCCH--H-HHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHHHhCCCHHHHHHHH--hCcHHHHHHHHHHHHHHHH-HHHHHHHHhCCCh--H-HHHHHHHHhcCC
Confidence 34455677889999999999999998644 33 2222333443 454 4556665554321 1 011222222222
Q ss_pred hhccHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046529 164 TATNFQELTQILTDLRILHLDIGRIALSSALLSDLFTWMLLLACILV 210 (799)
Q Consensus 164 s~Ts~pvv~~iL~elkl~~s~~g~lals~a~v~D~~~~ill~~~~~~ 210 (799)
+.++..+.++. .+.+. .++++...++.+++.+++-+...+
T Consensus 115 ~~~~s~v~t~~------a~Gd~-~la~~~~~~stll~~~~~Pl~~~l 154 (332)
T 3zux_A 115 GGTASNVMTYL------ARGNV-ALSVAVTSVSTLTSPLLTPAIFLM 154 (332)
T ss_dssp CCTHHHHHHHH------TTCCH-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHH------hCCCH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22333333332 23332 577778888888888776554443
No 38
>3cis_A Uncharacterized protein; alpha/beta hydrolase, ATP, universal stress protein, unknown function; HET: ATP; 2.90A {Mycobacterium tuberculosis} PDB: 2jax_A*
Probab=97.67 E-value=0.0001 Score=78.48 Aligned_cols=132 Identities=11% Similarity=0.109 Sum_probs=85.9
Q ss_pred ceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHH-HHHHHH
Q 046529 442 FRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQ-FKKAFE 520 (799)
Q Consensus 442 ~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~af~ 520 (799)
-+||+|++..+.....++.+..++...+. .++++|+.+..... +. .. .+. .....+.++ +-+.++
T Consensus 172 ~~Ilv~~D~s~~s~~al~~a~~la~~~~a--~l~ll~v~~~~~~~-~~----~~------~~~-~~~~~~~~~~l~~~~~ 237 (309)
T 3cis_A 172 APVLVGVDGSSASELATAIAFDEASRRNV--DLVALHAWSDVDVS-EW----PG------IDW-PATQSMAEQVLAERLA 237 (309)
T ss_dssp CCEEEECCSSHHHHHHHHHHHHHHHHTTC--CEEEEEESCSSCCT-TC----SS------CCH-HHHHHHHHHHHHHHHT
T ss_pred CeEEEEeCCChHHHHHHHHHHHHHHhcCC--EEEEEEEeeccccc-CC----Cc------ccH-HHHHHHHHHHHHHHHH
Confidence 58999999998888888888777754444 46999998643211 00 00 000 000111222 222333
Q ss_pred HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcccCCccccccccHHHHHhhhccCCCceEEE
Q 046529 521 NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSVCIF 598 (799)
Q Consensus 521 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsVgIl 598 (799)
.+.+. ..++.++..... .+..+.|++.|+ ++|+|+||-|++....+.+ ++++.++|++++||+|.|+
T Consensus 238 ~~~~~-~~~~~~~~~~~~---g~~~~~I~~~a~--~adliV~G~~~~~~~~~~l-----~Gsv~~~vl~~~~~pVlvv 304 (309)
T 3cis_A 238 GWQER-YPNVAITRVVVR---DQPARQLVQRSE--EAQLVVVGSRGRGGYAGML-----VGSVGETVAQLARTPVIVA 304 (309)
T ss_dssp THHHH-CTTSCEEEEEES---SCHHHHHHHHHT--TCSEEEEESSCSSCCTTCS-----SCHHHHHHHHHCSSCEEEE
T ss_pred HHHhh-CCCCcEEEEEEc---CCHHHHHHHhhC--CCCEEEECCCCCCCccccc-----cCcHHHHHHhcCCCCEEEe
Confidence 33332 135666655443 478999999997 8999999999876655544 7888999999999999665
No 39
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=97.60 E-value=0.00011 Score=67.98 Aligned_cols=37 Identities=24% Similarity=0.323 Sum_probs=35.6
Q ss_pred ceEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEee
Q 046529 620 QHLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFL 656 (799)
Q Consensus 620 ~~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~ 656 (799)
++|++++.|.++++.|+++|.++|+..+.+++++|+.
T Consensus 5 ~~ILv~~D~s~~s~~al~~a~~la~~~~a~l~ll~v~ 41 (138)
T 1q77_A 5 KVLLVLTDAYSDCEKAITYAVNFSEKLGAELDILAVL 41 (138)
T ss_dssp EEEEEEESTTCCCHHHHHHHHHHHTTTCCEEEEEEEC
T ss_pred cEEEEEccCCHhHHHHHHHHHHHHHHcCCeEEEEEEe
Confidence 3999999999999999999999999999999999998
No 40
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=97.58 E-value=0.00043 Score=66.95 Aligned_cols=139 Identities=9% Similarity=0.075 Sum_probs=75.5
Q ss_pred ceEEEeccCCc---------chHHHHHHHHHHh-hC--CCeEEEEEEeecCCCCCcccc-ccCCc-c--ccc--cchhhc
Q 046529 620 QHLLMLFLGGP---------DDREALAYAWRMA-AH--PNVKLTVVRFLPGKDPRTVLH-QKHNS-E--VAR--CTEKQA 681 (799)
Q Consensus 620 ~~I~v~f~GG~---------ddreAL~~A~rma-~~--~~v~ltvvr~~~~~~~~~~~~-~~~~~-~--~~~--~~e~~~ 681 (799)
++|++++.|.+ .++.|+++|.+++ +. .+++|+++|+.+.....- .. ..... . ..+ +..++.
T Consensus 6 ~~ILv~vD~s~~~~~~~~~~~s~~al~~a~~la~~~~~~~a~l~ll~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 84 (175)
T 2gm3_A 6 TKVMVAVNASTIKDYPNPSISCKRAFEWTLEKIVRSNTSDFKILLLHVQVVDEDGF-DDVDSIYASPEDFRDMRQSNKAK 84 (175)
T ss_dssp EEEEEECCBCSSSCTTCBCHHHHHHHHHHHHHTTTTCTTSEEEEEEEEEC-----------CCCCSHHHHHHHTTSHHHH
T ss_pred cEEEEEECCCcccccccccHHHHHHHHHHHHHhhcccCCCCEEEEEEEeecccccc-cccccccCCHHHHHHHHHHHHHH
Confidence 39999999999 8999999999987 44 699999999975321100 00 00000 0 000 111122
Q ss_pred HHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhh--cCCCcEEEEcccCCCCcccccCCCcCCCCCCCccccchhh
Q 046529 682 DDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDL--SDNCDLYIIGRREGAESRLTYDLSLDNLTNFPELGVIGSV 759 (799)
Q Consensus 682 d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~--~~~~DLviVGr~~~~~s~~~~gl~~~~w~e~~eLG~iGd~ 759 (799)
.++.++++...... ..+.+.-. +..|. ....|.+. +.++||+|+|+++. .++. .--+|-+.+-
T Consensus 85 ~~~~l~~~~~~~~~-~g~~~~~~-v~~G~-~~~~I~~~a~~~~~DLIVmG~~g~------~~~~------~~~~Gsva~~ 149 (175)
T 2gm3_A 85 GLHLLEFFVNKCHE-IGVGCEAW-IKTGD-PKDVICQEVKRVRPDFLVVGSRGL------GRFQ------KVFVGTVSAF 149 (175)
T ss_dssp HHHHHHHHHHHHHH-HTCEEEEE-EEESC-HHHHHHHHHHHHCCSEEEEEECCC------C--------------CHHHH
T ss_pred HHHHHHHHHHHHHH-CCCceEEE-EecCC-HHHHHHHHHHHhCCCEEEEeCCCC------Chhh------hhhcCchHHH
Confidence 34566666544221 12333222 22332 23333332 34799999999864 1333 2247888887
Q ss_pred hhcCCCCcceeEEEEeee
Q 046529 760 LAMSNFSLHASVLVIQQY 777 (799)
Q Consensus 760 Las~d~~~~~SvLVvqq~ 777 (799)
+... ++++||||...
T Consensus 150 vl~~---a~~pVlvv~~~ 164 (175)
T 2gm3_A 150 CVKH---AECPVMTIKRN 164 (175)
T ss_dssp HHHH---CSSCEEEEECC
T ss_pred HHhC---CCCCEEEEcCC
Confidence 7764 56899999764
No 41
>3g40_A Na-K-CL cotransporter; alpha/beta fold 10-stranded twisted beta sheet, transport protein; 1.90A {Methanosarcina acetivorans}
Probab=95.63 E-value=0.18 Score=52.12 Aligned_cols=221 Identities=11% Similarity=0.062 Sum_probs=134.0
Q ss_pred cceEEEEeecCCChHHHHHHHHhhccCCCCCceEEEEEEeeccCCcchhhhhccCCCCCCCCCCCCCcchhhHHHHHHHH
Q 046529 441 EFRIMACIHSTRNIAGMINLLQVSNATNQSAIHVFAVHLVEHLGHSTAMLLMNDGSNSTGFNDSCPMQATEAEQFKKAFE 520 (799)
Q Consensus 441 e~riLvcv~~~~~~~~li~Ll~~~~~~~~sp~~v~~lhLvel~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~af~ 520 (799)
.-.+||++.+|..-.+++.++..+...+. .+.+.+++ ++... + .-.++ +.+++
T Consensus 20 rP~iLV~sg~p~~~~~li~la~~lt~~~G---~ltv~~i~--p~~~~---------------~------~l~~q-l~~l~ 72 (294)
T 3g40_A 20 KANLLVPVEDPRELMGTFDFLRDITYPKG---SVKLLGLA--GNTDK---------------E------NLLSQ-LPSIS 72 (294)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHHTTTC---EEEEEECC-----CT---------------T------CHHHH-HHHHH
T ss_pred CCcEEEecCCchhhhhHHHHHHHhccCce---eEEEEEEc--cCCCc---------------c------HHHHH-HHHHH
Confidence 35799999999999999999999986653 46777774 22111 0 00123 35666
Q ss_pred HHHHhcCCceeEEEEEEecCCCChhHHHHHHHHhcC-----ccEEEEccCCCcccCCccccccccHHHHHhhhccCCCce
Q 046529 521 NYEKTSNNAVNVHTLTSVSSHESMHEDICCLAEDKR-----VAFIIIPYIRPLTTNDKIRNANTNRTVNLNLLQNTPCSV 595 (799)
Q Consensus 521 ~~~~~~~~~v~v~~~t~vs~~~~m~~dI~~~A~e~~-----a~lIIlp~h~~~~~dg~~~~~~~~~~vn~~Vl~~ApCsV 595 (799)
.|-+. .++..-..+..+ .+.++++-.+.+..+ .+.|+|+|..+...+. .++.+.+... ++--.|
T Consensus 73 ~~l~~--r~v~a~~~vi~a--~d~~~G~~~lvq~yglg~l~PNTilLg~~~~~e~~~------~y~~~i~~~~-~~~~nV 141 (294)
T 3g40_A 73 EGFQE--EGVFSSWTIIDT--AEFEENLVVGMEALTGSFFRPSILFLRLPENRDRDE------EIREIIRKAS-MYRMGV 141 (294)
T ss_dssp HHHHH--TTCEEEEEEC-------CHHHHHHHHHHTTCSSCSCEEEEECCSSGGGHH------HHHHHHHHHH-HTTCEE
T ss_pred HHHHh--CCceeEEEEEec--CChhHHHHHHHHHcCCCCCCCCEEEeCCCCChhhhH------HHHHHHHHHH-HhCceE
Confidence 66554 455444333334 588999999888754 7999999976543222 3667766653 446677
Q ss_pred EEEEcCCCCCCcccccccccccccceEEEecc--------CC--cchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccc
Q 046529 596 CIFVDRGLGSDEDKESQLKDHHGIQHLLMLFL--------GG--PDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVL 665 (799)
Q Consensus 596 gIlvdRg~~~~~~~~~~~~~~~~~~~I~v~f~--------GG--~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~ 665 (799)
.||-+....+. .. + ++|=+=.- || .+-..++-+|-.+..+.++++.+..++++
T Consensus 142 lil~~~~~~~f-----g~---~--~~IdvW~~~~~~~W~~g~~~~Ng~LmlllAylL~~nW~A~I~L~~vV~d------- 204 (294)
T 3g40_A 142 LLFSKHPQAGL-----GR---Q--NLINLWIENRGLDWDISMELGNMDLALLIAYKLKSNWKASLSFMTFAPT------- 204 (294)
T ss_dssp EEEECCTTTTT-----TT---S--CEEEEECCCC---CCCCSCCCTTHHHHHHHHHHHHHHTCEEEEEEECSS-------
T ss_pred EEEecCCccCC-----CC---C--ceEEEecCCCCCcccccccccchhHHHHHHHHHhhCcCCeEEEEEecCC-------
Confidence 66643221111 01 1 14444322 22 24467999999999999999999999853
Q ss_pred cccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEEEEecChHHHHHHHHhhcCCCcEEEEcccCC
Q 046529 666 HQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIENVVNNGEEIVAAIKDLSDNCDLYIIGRREG 733 (799)
Q Consensus 666 ~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E~~v~~~~e~~~~i~~~~~~~DLviVGr~~~ 733 (799)
|.+++.-+.+++++.+..--. ...| +|. .+-.++|++ ..+-||+++|-...
T Consensus 205 ----------e~a~~~a~~~l~~Lv~~~Ri~-a~~~---vv~--~~F~~il~~-s~~ADL~flGl~~~ 255 (294)
T 3g40_A 205 ----------AIQAQAAENFLQSLAELARIP-NVKM---QVL--RENPIKSSK-LPFASLHIFSLDPN 255 (294)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHTCC-SCEE---EEE--SSCTTTSSS-CCCCSEEEEECCSS
T ss_pred ----------HHHHHHHHHHHHHHHHHhcCC-ceEE---Eec--CchHHHHhh-CcCCCEEEEcCCCC
Confidence 334555667788887654322 2222 222 234456676 46789999998664
No 42
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=66.64 E-value=47 Score=35.05 Aligned_cols=95 Identities=11% Similarity=0.013 Sum_probs=55.7
Q ss_pred HHHHHhhcCCCCCchhHHHHHHhhhhhhhhhhHHHHHhhhccccccccCch-hHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q 046529 281 AFTLGVIMPKKQPITNTFKDKLDDFLVSSGLPGFFLLTGFRSNLVVFSSHK-PWMFVLVVLFGFGMSKILITFLVSLLHK 359 (799)
Q Consensus 281 af~aGl~lp~~~~~~~~l~~kl~~~~~~l~lPlFF~~~Gl~idl~~l~~~~-~~~~~~~ii~~~~~~K~~~~~l~~~~~~ 359 (799)
+.++|...|.-.. .++.. ....+.+.+...|+++++..+.... .+.......+.-++...+.++..++.++
T Consensus 27 ~~~lg~~~P~~~~-------~~~~~-i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~vi~Pll~~~l~~~~~ 98 (332)
T 3zux_A 27 FAAAAFFAPDTFK-------WAGPY-IPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLN 98 (332)
T ss_dssp HHHHHHHCGGGTG-------GGGGG-HHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcchhhh-------hhHHH-HHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3467777774211 12333 3456777888899999988876321 3444455555666777888888888887
Q ss_pred CChHHHHHHHHHH-hhhhhHHHHHH
Q 046529 360 IPPKEGLALGLLM-NTKGLLALIVL 383 (799)
Q Consensus 360 ~~~~e~~~lgl~l-~~kG~v~l~~~ 383 (799)
.+......+-+.. .|-|..+.+..
T Consensus 99 l~~~~~~Glil~~~~P~~~~s~v~t 123 (332)
T 3zux_A 99 LPAEIAVGVILVGCCPGGTASNVMT 123 (332)
T ss_dssp CCHHHHHHHHHHHHSCCCTHHHHHH
T ss_pred CChHHHHHHHHHhcCCchhHHHHHH
Confidence 7654433322222 34444444433
No 43
>1zun_A Sulfate adenylyltransferase subunit 2; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae} SCOP: c.26.2.2
Probab=60.95 E-value=9.4 Score=40.41 Aligned_cols=38 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
++++.|.||+|+--.|.++.+.....+..+.++++.+.
T Consensus 48 ~ivVa~SGGkDS~vLL~Ll~~~~~~~~~~i~vv~vDtg 85 (325)
T 1zun_A 48 NPVMLYSIGKDSAVMLHLARKAFFPGKLPFPVMHVDTR 85 (325)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHTTSCCSSCEEEECCS
T ss_pred CEEEEEcChHHHHHHHHHHHHhccccCCCEEEEEEECC
Confidence 88999999999999999999987654556778888544
No 44
>2wsi_A FAD synthetase; transferase, nucleotidyltransferase, nucleotide-binding; HET: FAD; 1.90A {Saccharomyces cerevisiae}
Probab=57.33 E-value=48 Score=34.54 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=55.9
Q ss_pred eEEEeccCCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEeecCCCCCccccccCCccccccchhhcH
Q 046529 621 HLLMLFLGGPDDREALAYAWRMA-A-----------------HPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQAD 682 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d 682 (799)
++++.|.||+|+--.|.++.+.. + .++..+.++++.+.... ...
T Consensus 55 ~i~vafSGGKDS~VLL~L~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~vv~iDtg~~f------------------pet 116 (306)
T 2wsi_A 55 EISFSYNGGKDCQVLLLLYLSCLWEYFFIKAQNSQFDFEFQSFPMQRLPTVFIDQEETF------------------PTL 116 (306)
T ss_dssp SEEEECCSCHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCCCEEEEECCCTTCC------------------HHH
T ss_pred CEEEEecCCHHHHHHHHHHHHHHhhhcccccccccccccccccCCCCeeEEEEeCCCCC------------------HHH
Confidence 79999999999999999998863 1 13566788887543322 225
Q ss_pred HHHHHHhhhhcCCCCCeEEEEEEec-----ChHHHHHHHHhhcCCCcEEEEcccCCC
Q 046529 683 DEDIYEFKFKTMNDESISYIENVVN-----NGEEIVAAIKDLSDNCDLYIIGRREGA 734 (799)
Q Consensus 683 ~~~l~~~~~~~~~~~~v~y~E~~v~-----~~~e~~~~i~~~~~~~DLviVGr~~~~ 734 (799)
.++++++.+++. +.......+ .-.+......+.....+.+++|.|++.
T Consensus 117 ~~fv~~~~~~yg----l~l~v~~~~~~~~~~l~~~~~~~~k~~p~~~aii~G~Rrdd 169 (306)
T 2wsi_A 117 ENFVLETSERYC----LSLYESQRQSGASVNMADAFRDFIKIYPETEAIVIGIRHTD 169 (306)
T ss_dssp HHHHHHHHHHTT----EEEEECCC-----CCHHHHHHHHHHHCTTCCEEECCCCCCS
T ss_pred HHHHHHHHHHcC----CCEEEEeCCccccccHHHHHHHHHhhCCCCcEEEEEEeccc
Confidence 567777776642 222111111 111222223333456789999998864
No 45
>1efv_B Electron transfer flavoprotein; electron transport, glutaric acidemia type II; HET: FAD AMP; 2.10A {Homo sapiens} SCOP: c.26.2.3 PDB: 1t9g_S* 2a1u_B* 2a1t_S*
Probab=55.35 E-value=13 Score=37.88 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=48.4
Q ss_pred ccCCcchHHHHHHHHHHhhCCCe--EEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEE
Q 046529 626 FLGGPDDREALAYAWRMAAHPNV--KLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIE 703 (799)
Q Consensus 626 f~GG~ddreAL~~A~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E 703 (799)
+.=.|.|.+|++.|.|+++. +. +++++-+=++. .++.+.+.... +-+++...+
T Consensus 36 ~~lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~~----------------------a~~~lr~ala~--GaD~vi~v~ 90 (255)
T 1efv_B 36 HSMNPFCEIAVEEAVRLKEK-KLVKEVIAVSCGPAQ----------------------CQETIRTALAM--GADRGIHVE 90 (255)
T ss_dssp EEECHHHHHHHHHHHHHHHT-TSCSEEEEEEEESTT----------------------HHHHHHHHHHH--TCSEEEEEE
T ss_pred ccCCHHHHHHHHHHHHHHhc-CCCceEEEEEeCChh----------------------HHHHHHHHHhc--CCCEEEEEe
Confidence 33358999999999999987 55 88888763211 11233333221 334554443
Q ss_pred -EE----ecChHHHHHHHHhh--cCCCcEEEEcccC
Q 046529 704 -NV----VNNGEEIVAAIKDL--SDNCDLYIIGRRE 732 (799)
Q Consensus 704 -~~----v~~~~e~~~~i~~~--~~~~DLviVGr~~ 732 (799)
-- -.+...+..+|.+. ..+|||++.|++.
T Consensus 91 ~d~~~~~~~~~~~~A~~La~~i~~~~~dlVl~G~~s 126 (255)
T 1efv_B 91 VPPAEAERLGPLQVARVLAKLAEKEKVDLVLLGKQA 126 (255)
T ss_dssp CCHHHHTTCCHHHHHHHHHHHHHHHTCSEEEEESCC
T ss_pred cChhhcccCCHHHHHHHHHHHHHhcCCCEEEEeCcc
Confidence 11 11334455555544 3469999999986
No 46
>1efp_B ETF, protein (electron transfer flavoprotein); electron transport, glutaric acidemia type II; HET: FAD AMP; 2.60A {Paracoccus denitrificans} SCOP: c.26.2.3
Probab=55.15 E-value=14 Score=37.61 Aligned_cols=80 Identities=13% Similarity=0.110 Sum_probs=48.1
Q ss_pred CCcchHHHHHHHHHHhhCCCe--EEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEEE--
Q 046529 628 GGPDDREALAYAWRMAAHPNV--KLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYIE-- 703 (799)
Q Consensus 628 GG~ddreAL~~A~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~E-- 703 (799)
=.|.|.+|++.|.|+++. +. +++++-+=++ . .++.+.+.... +-+++...+
T Consensus 35 lnp~d~~Ale~A~~Lke~-g~~~~V~av~~G~~-----------------~-----a~~~lr~ala~--GaD~vi~v~~d 89 (252)
T 1efp_B 35 MNPFDEIAVEEAIRLKEK-GQAEEIIAVSIGVK-----------------Q-----AAETLRTALAM--GADRAILVVAA 89 (252)
T ss_dssp ECHHHHHHHHHHHHHHTT-TSCSEEEEEEEESG-----------------G-----GHHHHHHHHHH--TCSEEEEEECC
T ss_pred CCHHHHHHHHHHHHHHhc-CCCceEEEEEeCCh-----------------h-----HHHHHHHHHhc--CCCEEEEEecC
Confidence 358999999999999987 55 8888876321 1 11233333221 334554443
Q ss_pred EE---ecChHHHHHHHHhh--cCCCcEEEEcccC
Q 046529 704 NV---VNNGEEIVAAIKDL--SDNCDLYIIGRRE 732 (799)
Q Consensus 704 ~~---v~~~~e~~~~i~~~--~~~~DLviVGr~~ 732 (799)
.. -.+...+..+|.+. ..+|||++.|++.
T Consensus 90 ~~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s 123 (252)
T 1efp_B 90 DDVQQDIEPLAVAKILAAVARAEGTELIIAGKQA 123 (252)
T ss_dssp SSTTCCCCHHHHHHHHHHHHHHHTCSEEEEESCC
T ss_pred hhhcccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 11 11344555555544 3469999999986
No 47
>1o97_C Electron transferring flavoprotein beta-subunit; FAD binding; HET: AMP FAD; 1.6A {Methylophilus methylotrophus} SCOP: c.26.2.3 PDB: 1o95_C* 1o96_A* 1o94_C* 3clr_C* 3cls_C* 3clt_C* 3clu_C*
Probab=54.92 E-value=9.3 Score=39.20 Aligned_cols=84 Identities=13% Similarity=0.149 Sum_probs=49.0
Q ss_pred eccCCcchHHHHHHHHHHhhCCCe--EEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCeEEE
Q 046529 625 LFLGGPDDREALAYAWRMAAHPNV--KLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESISYI 702 (799)
Q Consensus 625 ~f~GG~ddreAL~~A~rma~~~~v--~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v~y~ 702 (799)
...=.|.|.+|++.|.|+++..+. +++++.+=++ . .++.+.+.... +-+++...
T Consensus 32 ~~~lnp~d~~ale~A~~Lke~~g~~~~V~av~~G~~-----------------~-----~~~~lr~ala~--GaD~vi~v 87 (264)
T 1o97_C 32 MYDLNEWDDFSLEEAMKIKESSDTDVEVVVVSVGPD-----------------R-----VDESLRKCLAK--GADRAVRV 87 (264)
T ss_dssp EEEECHHHHHHHHHHHHHHHHCSSCCEEEEEEESCG-----------------G-----GHHHHHHHHHT--TCSEEEEE
T ss_pred CCccCHHHHHHHHHHHHHHHhcCCCceEEEEEeCch-----------------h-----HHHHHHHHHhc--CCCEEEEE
Confidence 333459999999999999976555 8888876211 1 12334333221 33445433
Q ss_pred EEEe---cChHHHHHHHHhh--cCCCcEEEEcccC
Q 046529 703 ENVV---NNGEEIVAAIKDL--SDNCDLYIIGRRE 732 (799)
Q Consensus 703 E~~v---~~~~e~~~~i~~~--~~~~DLviVGr~~ 732 (799)
+--- .+...+..+|.+. ..+|||++.|++.
T Consensus 88 ~d~~~~~~~~~~~a~~La~~i~~~~~dlVl~G~~s 122 (264)
T 1o97_C 88 WDDAAEGSDAIVVGRILTEVIKKEAPDMVFAGVQS 122 (264)
T ss_dssp CCGGGTTCCHHHHHHHHHHHHHHHCCSEEEEESCC
T ss_pred cCcccccCCHHHHHHHHHHHHHhcCCCEEEEcCCc
Confidence 2111 1334455555544 3369999999986
No 48
>1ni5_A Putative cell cycle protein MESJ; structural genomics, ATPase, PP-type, putative cell cycle PR PSI, protein structure initiative; 2.65A {Escherichia coli} SCOP: b.153.1.2 c.26.2.5 d.229.1.1
Probab=53.02 E-value=22 Score=39.09 Aligned_cols=92 Identities=15% Similarity=0.127 Sum_probs=59.3
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhC-CCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhcCCCCCe
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAH-PNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKTMNDESI 699 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~-~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~~~~~~v 699 (799)
+|++.|.||+|+--.|.++.++.+. .+.++.++|+...-.. +.+.|.++++++..+.. +
T Consensus 15 ~vlVa~SGG~DS~~Ll~ll~~~~~~~~g~~v~avhvdhglr~----------------~s~~~~~~v~~~~~~lg----i 74 (433)
T 1ni5_A 15 QILVAFSGGLDSTVLLHQLVQWRTENPGVALRAIHVHHGLSA----------------NADAWVTHCENVCQQWQ----V 74 (433)
T ss_dssp EEEEECCSBHHHHHHHHHHHHHHTTSTTCEEEEEEECCSCCS----------------SHHHHHHHHHHHHHHTT----C
T ss_pred EEEEEEcchHHHHHHHHHHHHHHHhcCCCeEEEEEEECCCCc----------------ccHHHHHHHHHHHHHcC----C
Confidence 8999999999999999999998877 8899999999643222 12235567777766542 2
Q ss_pred EEEEEEec------ChHHHHH-----HHHhhcCCCcEEEEcccC
Q 046529 700 SYIENVVN------NGEEIVA-----AIKDLSDNCDLYIIGRRE 732 (799)
Q Consensus 700 ~y~E~~v~------~~~e~~~-----~i~~~~~~~DLviVGr~~ 732 (799)
.+.-+.++ +.++... ++.+...++|-++.|-+.
T Consensus 75 ~~~v~~~~~~~~~~~~e~~aR~~Ry~~l~~~a~~~~~i~tgH~~ 118 (433)
T 1ni5_A 75 PLVVERVQLAQEGLGIEAQARQARYQAFARTLLPGEVLVTAQHL 118 (433)
T ss_dssp CEEEECCCCCCSSSTTTTHHHHHHHHHHHHTCCTTEEEECCCCH
T ss_pred cEEEEEecCCCCCCCHHHHHHHHHHHHHHHHHhhCCeEEeeccc
Confidence 22211111 1122222 234445568988888764
No 49
>1wy5_A TILS, hypothetical UPF0072 protein AQ_1887; N-type ATP-ppase, structural genomics, translation, NPPSFA; 2.42A {Aquifex aeolicus} SCOP: c.26.2.5 d.229.1.1 PDB: 2e21_A* 2e89_A*
Probab=46.73 E-value=23 Score=37.07 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=33.2
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeE-EEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVK-LTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~-ltvvr~~~~ 658 (799)
+|++.+.||+|+--.|.++.+..+..+.+ +.++++...
T Consensus 26 ~vlva~SGG~DS~~Ll~ll~~~~~~~g~~~v~av~vd~g 64 (317)
T 1wy5_A 26 RVLIAFSGGVDSVVLTDVLLKLKNYFSLKEVALAHFNHM 64 (317)
T ss_dssp EEEEECCSSHHHHHHHHHHHHSTTTTTCSEEEEEEEECC
T ss_pred EEEEEecchHHHHHHHHHHHHHHHHcCCCEEEEEEEECC
Confidence 89999999999999999999887777777 999998643
No 50
>3fwk_A FMN adenylyltransferase; FAD biosynthesis, alpha/beta protein, rossmann- like fold, APO-form, extended loop region; HET: BGC; 1.20A {Candida glabrata} PDB: 3g59_A* 3g5a_A* 3g6k_A*
Probab=46.72 E-value=76 Score=33.06 Aligned_cols=91 Identities=18% Similarity=0.131 Sum_probs=52.4
Q ss_pred eEEEeccCCcchHHHHHHHHHHh-h-----------------CCCeEEEEEEeecCCCCCccccccCCccccccchhhcH
Q 046529 621 HLLMLFLGGPDDREALAYAWRMA-A-----------------HPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQAD 682 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma-~-----------------~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d 682 (799)
++++.|.||+|+--.|.++.+.. + .|...+.|+.+-+..... | -
T Consensus 60 ~ialSfSGGKDStVLLhL~~kal~~~~~~~~~~~~~~~~~~~~p~~~ipvifiDTG~~Fp-------------E-----T 121 (308)
T 3fwk_A 60 EISFSYNGGKDCQVLLLLYLSCLWEYYIVKLSQSQFDGKFHRFPLTKLPTVFIDHDDTFK-------------T-----L 121 (308)
T ss_dssp SEEEECCSSHHHHHHHHHHHHHHHHHHTCCE-----------------EEEECCCTTCCH-------------H-----H
T ss_pred CEEEEecCChhHHHHHHHHHHHhhhhcccccccccccccccccCCCCccEEEEeCCCCCH-------------H-----H
Confidence 79999999999999999998752 1 233567788775544331 1 2
Q ss_pred HHHHHHhhhhcCCCCCeEEEEEEecC---hHHHHHHHHhhcCCCcEEEEcccCC
Q 046529 683 DEDIYEFKFKTMNDESISYIENVVNN---GEEIVAAIKDLSDNCDLYIIGRREG 733 (799)
Q Consensus 683 ~~~l~~~~~~~~~~~~v~y~E~~v~~---~~e~~~~i~~~~~~~DLviVGr~~~ 733 (799)
.++++++.+++.- ++ .....+. -.+....+++....+|.++.|+|+.
T Consensus 122 ~ef~d~~~~~ygL--~L--~v~~p~~~~~~~~~cc~~~K~~P~~~AwitG~RR~ 171 (308)
T 3fwk_A 122 ENFIEETSLRYSL--SL--YESDRDKCETMAEAFETFLQVFPETKAIVIGIRHT 171 (308)
T ss_dssp HHHHHHHHHHTTE--EE--EECCTTSCCCHHHHHHHHHHHCTTCCEEECCCCTT
T ss_pred HHHHHHHHHHhCC--cE--EEeCCCCCHHHHHHHHHHHHhCCCCCEEEEEeecC
Confidence 2567777666521 11 1111111 1122333444455799999999987
No 51
>3a2k_A TRNA(Ile)-lysidine synthase; ligase, pseudo-knot, ligase/RNA complex; 3.65A {Geobacillus kaustophilus}
Probab=44.84 E-value=22 Score=39.49 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=45.1
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecCCCCCccccccCCccccccchhhcHHHHHHHhhhhc
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPGKDPRTVLHQKHNSEVARCTEKQADDEDIYEFKFKT 693 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~~~~~~~~~~~~~~~~~~~~e~~~d~~~l~~~~~~~ 693 (799)
+|++.+.||+|+--.|.++.++.+..+.++.++|+...-.. .+.+.|.++++++..+.
T Consensus 20 ~vlVa~SGG~DS~~Ll~ll~~~~~~~~~~v~avhvdhglrg---------------~~s~~~~~~v~~~~~~l 77 (464)
T 3a2k_A 20 AVIVGVSGGPDSLALLHVFLSLRDEWKLQVIAAHVDHMFRG---------------RESEEEMEFVKRFCVER 77 (464)
T ss_dssp BEEEECCSSHHHHHHHHHHHHHHHTTTCBCEEEEEECTTCT---------------HHHHHHHHHHHHHHHHT
T ss_pred EEEEEEcCcHHHHHHHHHHHHHHHHcCCeEEEEEEECCCCc---------------cccHHHHHHHHHHHHHc
Confidence 89999999999999999999998888899999999644221 12334667777777664
No 52
>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8
Probab=43.49 E-value=42 Score=28.68 Aligned_cols=56 Identities=9% Similarity=-0.038 Sum_probs=40.0
Q ss_pred ChhHHHHHHHHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccCCCceEEEEcCC
Q 046529 543 SMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNTPCSVCIFVDRG 602 (799)
Q Consensus 543 ~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~ApCsVgIlvdRg 602 (799)
...+.|.+++++.+++.|++|.-++. ||...... ..+.+.+++-++ +.+| .++|.-
T Consensus 38 ~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~-~lpV-~~~DER 94 (98)
T 1iv0_A 38 EDVEALLDFVRREGLGKLVVGLPLRT--DLKESAQAGKVLPLVEALRAR-GVEV-ELWDER 94 (98)
T ss_dssp HHHHHHHHHHHHHTCCEEEEECCCCC--CSSSCCCSSTTHHHHHHHHHT-TCEE-EEECCS
T ss_pred HHHHHHHHHHHHcCCCEEEEeeccCC--CCCcCHHHHHHHHHHHHHhcC-CCCE-EEECCC
Confidence 44578999999999999999987653 44432222 567777777666 8888 567753
No 53
>2l0e_A Sodium/hydrogen exchanger 1; transmembrane helix, membrane protein, NHE1; NMR {Homo sapiens}
Probab=35.46 E-value=7.9 Score=26.29 Aligned_cols=27 Identities=4% Similarity=0.165 Sum_probs=23.5
Q ss_pred hHHHHHHHHHhhccHHHHHHHHHhccc
Q 046529 154 GGYMFCAVALTATNFQELTQILTDLRI 180 (799)
Q Consensus 154 ~~~l~l~~~ls~Ts~pvv~~iL~elkl 180 (799)
..++.+|+++|.|++..+..++++++.
T Consensus 4 ~~~llfGAiis~TDpVavlaif~~~~v 30 (33)
T 2l0e_A 4 KDNLLFGSIISAVDPVAVLAVFEEIHK 30 (33)
T ss_dssp CCCCTTHHHHTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccCCChHHHHHHHHHcCC
Confidence 356789999999999999999999874
No 54
>2oq2_A Phosphoadenosine phosphosulfate reductase; sulfate reduction, PAPS reductase, oxidoreductase; HET: A3P; 2.10A {Saccharomyces cerevisiae}
Probab=30.52 E-value=49 Score=33.46 Aligned_cols=37 Identities=8% Similarity=-0.053 Sum_probs=30.5
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
++++.|.||+|+--.|.++.+.... +..+.++++.+.
T Consensus 43 ~v~va~SGGkDS~vLL~ll~~~~~~-~~~i~vv~iDtg 79 (261)
T 2oq2_A 43 HLFQTTAFGLTGLVTIDMLSKLSEK-YYMPELLFIDTL 79 (261)
T ss_dssp SEEEECCCCHHHHHHHHHHHHHTTT-SCCCEEEEECCS
T ss_pred CEEEEecCCHHHHHHHHHHHHhCcc-CCCeeEEEecCC
Confidence 7899999999999999999998765 556778887543
No 55
>2k3c_A TMIX peptide; membrane peptide, dodecylphosphocholine micelle, NHE1, Na+/H+ transporter, metal transport; NMR {Synthetic}
Probab=29.31 E-value=1.3 Score=30.14 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=23.7
Q ss_pred HHHHHHHHHhchhHHHHHHHHHhhcCC
Q 046529 264 LLCGFITDGCGAHSAIGAFTLGVIMPK 290 (799)
Q Consensus 264 l~~~~~ae~~G~~~ilGaf~aGl~lp~ 290 (799)
+++++++|.+++|++++.+.+|+.+.+
T Consensus 4 y~~Yl~AE~~~lSGIlavv~~Gi~~~~ 30 (33)
T 2k3c_A 4 YMAYLSAELFHLSGIMALIASGVVMRP 30 (33)
T ss_dssp STTTGGGSSSTTTTTTTTTTTTSCCCC
T ss_pred HHHHHHHHHhCcChHHHHHHHHHHHhh
Confidence 456788999999999999999998875
No 56
>1sur_A PAPS reductase; assimilatory sulfate reduction, 3-phospho-adenylyl-sulfate reductase, oxidoreductase; 2.00A {Escherichia coli} SCOP: c.26.2.2
Probab=27.47 E-value=70 Score=31.05 Aligned_cols=34 Identities=15% Similarity=0.148 Sum_probs=27.8
Q ss_pred eEEEeccCCcchHHHHHHHHHHhhCCCeEEEEEEeecC
Q 046529 621 HLLMLFLGGPDDREALAYAWRMAAHPNVKLTVVRFLPG 658 (799)
Q Consensus 621 ~I~v~f~GG~ddreAL~~A~rma~~~~v~ltvvr~~~~ 658 (799)
+|+|.|.||+|+--.|.++.+.. + ++.++++.+.
T Consensus 46 ~v~Va~SGGkDS~vLL~ll~~~~--~--~v~~v~vd~g 79 (215)
T 1sur_A 46 EYVLSSSFGIQAAVSLHLVNQIR--P--DIPVILTDTG 79 (215)
T ss_dssp EEEEECCCCTTHHHHHHHHHHHS--T--TCEEEEEECS
T ss_pred CEEEEecCCHHHHHHHHHHHHhC--C--CCeEEEeeCC
Confidence 89999999999999999998874 3 4667887543
No 57
>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A
Probab=24.35 E-value=83 Score=28.62 Aligned_cols=70 Identities=13% Similarity=0.067 Sum_probs=44.9
Q ss_pred eEEEEEEec--CCCChhHHHHHHHHhcCccEEEEccCCCcccCCcccccc-ccHHHHHhhhccCCCceEEEEcCCC
Q 046529 531 NVHTLTSVS--SHESMHEDICCLAEDKRVAFIIIPYIRPLTTNDKIRNAN-TNRTVNLNLLQNTPCSVCIFVDRGL 603 (799)
Q Consensus 531 ~v~~~t~vs--~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~~dg~~~~~~-~~~~vn~~Vl~~ApCsVgIlvdRg~ 603 (799)
..+|...+. ....-.+.|.+++++.+++.|++|..++. ||...... ..+.+.+++-++-+.+| .++|.-+
T Consensus 26 ~A~pl~ti~~~~~~~~~~~l~~li~e~~v~~iVvGlP~~m--dGt~~~~~~~~~~f~~~L~~~~~lpV-~~~DERl 98 (138)
T 1nu0_A 26 TARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNM--DGTEQPLTARARKFANRIHGRFGVEV-KLHDERL 98 (138)
T ss_dssp EEEEEEEEEEETTEECHHHHHHHHHHHCCSEEEEEEEECT--TSCBCHHHHHHHHHHHHHHHHHCCCE-EEEEEEC
T ss_pred EEeeEEEEEcCCcchHHHHHHHHHHHcCCCEEEEecccCC--CcCcCHHHHHHHHHHHHHHHHhCCCE-EEEcCCc
Confidence 344444442 22344689999999999999999986543 45432111 45667777766668888 5666533
No 58
>2k4m_A TR8_protein, UPF0146 protein MTH_1000; alpha+beta, rossman fold, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=21.47 E-value=1.4e+02 Score=27.74 Aligned_cols=36 Identities=17% Similarity=0.236 Sum_probs=30.7
Q ss_pred EEEEecCCCChhHHHHHHHHhcCccEEEEccCCCcc
Q 046529 534 TLTSVSSHESMHEDICCLAEDKRVAFIIIPYIRPLT 569 (799)
Q Consensus 534 ~~t~vs~~~~m~~dI~~~A~e~~a~lIIlp~h~~~~ 569 (799)
-.-.+-|...|+..|.++|++-++|+||-|+.....
T Consensus 92 LIYsirPP~El~~~i~~lA~~v~adliI~pL~~E~~ 127 (153)
T 2k4m_A 92 LIYSIRPPAEIHSSLMRVADAVGARLIIKPLTGEDI 127 (153)
T ss_dssp EEEEESCCTTTHHHHHHHHHHHTCEEEEECBTTBCC
T ss_pred EEEEcCCCHHHHHHHHHHHHHcCCCEEEEcCCCCcC
Confidence 344667889999999999999999999999976544
Done!