BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046530
         (310 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|Q Chain Q, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|R Chain R, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
 pdb|1TQE|S Chain S, Mechanism Of Recruitment Of Class Ii Histone
          Deacetylases By Myocyte Enhancer Factor-2
          Length = 93

 Score = 81.6 bits (200), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 56/78 (71%), Gaps = 2/78 (2%)

Query: 1  MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN 60
          MGR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ + R+  ++  
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST 60

Query: 61 KSMEEILARYVNLPE-HE 77
            M+ +L +Y    E HE
Sbjct: 61 -DMDRVLLKYTEYSEPHE 77


>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|B Chain B, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|I Chain I, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3KOV|J Chain J, Structure Of Mef2a Bound To Dna Reveals A Completely
          Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND
          RECRUITS Transcription Co-Factors
 pdb|3P57|A Chain A, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|B Chain B, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|C Chain C, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|D Chain D, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|I Chain I, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
 pdb|3P57|J Chain J, Crystal Structure Of The P300 Taz2 Domain Bound To Mef2
          On Dna
          Length = 90

 Score = 79.3 bits (194), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 56/77 (72%), Gaps = 2/77 (2%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAST- 59

Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76


>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of
          Histone Deacetylases By Myocyte Enhancer Factor-2
 pdb|1N6J|B Chain B, Structural Basis Of Sequence-Specific Recruitment Of
          Histone Deacetylases By Myocyte Enhancer Factor-2
          Length = 93

 Score = 79.0 bits (193), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 55/77 (71%), Gaps = 2/77 (2%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ + R+  ++   
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYAST- 59

Query: 62 SMEEILARYVNLPE-HE 77
           M+ +L +Y    E HE
Sbjct: 60 DMDRVLLKYTEYSEPHE 76


>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|B Chain B, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|C Chain C, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
 pdb|3MU6|D Chain D, Inhibiting The Binding Of Class Iia Histone Deacetylases
          To Myocyte Enhancer Factor-2 By Small Molecules
          Length = 71

 Score = 77.0 bits (188), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 36/69 (52%), Positives = 54/69 (78%), Gaps = 1/69 (1%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMEEILARY 70
           M+++L +Y
Sbjct: 60 DMDKVLLKY 68


>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The
          Transcription Factor Mef2a With A 20mer Oligonucleotide
 pdb|1C7U|B Chain B, Complex Of The Dna Binding Core Domain Of The
          Transcription Factor Mef2a With A 20mer Oligonucleotide
          Length = 85

 Score = 75.9 bits (185), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 55/77 (71%), Gaps = 2/77 (2%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVL D ++ALI+F+ S ++  ++   
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYAST- 59

Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76


>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|B Chain B, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|C Chain C, Crystal Structure Of Mef2a Core Bound To Dna
 pdb|1EGW|D Chain D, Crystal Structure Of Mef2a Core Bound To Dna
          Length = 77

 Score = 74.3 bits (181), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 2/77 (2%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GR K+QI RI +  NRQVTF+KR+ GL+KKAYELSVLCD ++ALI+F+ S ++  ++ + 
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA-ST 59

Query: 62 SMEEILARYVNLPE-HE 77
           M+++L +Y    E HE
Sbjct: 60 DMDKVLLKYTEYNEPHE 76


>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
          Crystal Structure
 pdb|1MNM|B Chain B, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX
          Crystal Structure
          Length = 100

 Score = 62.8 bits (151), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 32/59 (54%), Positives = 42/59 (71%)

Query: 3  RVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          R K++IK IEN T R VTFSKR++G++KKA+ELSVL    V L++ S +G V  FS  K
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFSTPK 76


>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific
          Sre Dna
 pdb|1SRS|B Chain B, Serum Response Factor (Srf) Core Complexed With Specific
          Sre Dna
 pdb|1HBX|A Chain A, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|B Chain B, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|D Chain D, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
 pdb|1HBX|E Chain E, Ternary Complex Of Sap-1 And Srf With Specific Sre Dna
          Length = 92

 Score = 57.0 bits (136), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  K
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 70


>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
          Complex
 pdb|1K6O|C Chain C, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna
          Complex
          Length = 103

 Score = 55.5 bits (132), Expect = 4e-08,   Method: Composition-based stats.
 Identities = 28/60 (46%), Positives = 40/60 (66%)

Query: 2  GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNK 61
          GRVK++++ I+N   R  TFSKR+ G++KKAYELS L    V L++ S +G V  F+  K
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATRK 69


>pdb|1IYJ|B Chain B, Structure Of A Brca2-Dss1 Complex
 pdb|1IYJ|D Chain D, Structure Of A Brca2-Dss1 Complex
          Length = 817

 Score = 33.1 bits (74), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 13/60 (21%)

Query: 236 VSDEPQEATEILVPPLNM---------FRGHNMNIDGQISRR-DGLEDDNNDMQRPQFGQ 285
           VSD+   +T++ VPP  +         F   N+N++G+  +  DG+ +D ND   PQF +
Sbjct: 18  VSDK---STKVFVPPFKVKSRFHRDEHFDSKNVNLEGKNQKSADGVSEDGNDSDFPQFNK 74


>pdb|2B64|Y Chain Y, 30s Ribosomal Subunit, Trnas, Mrna And Release Factor Rf1
           From A Crystal Structure Of The Whole Ribosomal Complex.
           This File Contains The 30s Subunit, Trnas, Mrna And
           Release Factor Rf1 From A Crystal Structure Of The Whole
           Ribosomal Complex". The Entire Crystal Structure
           Contains One 70s Ribosome, Trnas, Mrna And Release
           Factor Rf1 And Is Described In Remark 400.
 pdb|3D5A|X Chain X, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 30s Subunit, Release
           Factor 1 (Rf1), Two Trna, And Mrna Molecules Of One 70s
           Ribosome. The Entire Crystal Structure Contains Two 70s
           Ribosomes As Described In Remark 400.
 pdb|3D5C|X Chain X, Structural Basis For Translation Termination On The 70s
           Ribosome. This File Contains The 30s Subunit, Release
           Factor 1 (Rf1), Two Trna, And Mrna Molecules Of The
           Second 70s Ribosome. The Entire Crystal Structure
           Contains Two 70s Ribosomes As Described In Remark 400.
 pdb|3MR8|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3mr8 Contains 30s Ribosomal Subunit. The 50s
           Ribosomal Subunit Can Be Found In Pdb Entry 3ms1.
           Molecule B In The Same Asymmetric Unit Is Deposited As
           3mrz (50s) And 3ms0 (30s).
 pdb|3MS0|V Chain V, Recognition Of The Amber Stop Codon By Release Factor Rf1.
           This Entry 3ms0 Contains 30s Ribosomal Subunit. The 50s
           Ribosomal Subunit Can Be Found In Pdb Entry 3mrz.
           Molecule A In The Same Asymmetric Unit Is Deposited As
           3mr8 (30s) And 3ms1 (50s)
          Length = 354

 Score = 32.3 bits (72), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 39/93 (41%), Gaps = 16/93 (17%)

Query: 123 IVKC---KSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICN 179
           +V C   +SQI+N EK L I        + L E+K  E+         R+RK  L +I  
Sbjct: 249 MVTCQDSRSQIKNREKALMILR------SRLLEMKRAEE-------AERLRKTRLAQIGT 295

Query: 180 SSSTPATSQAHLPPAETSDHMNGFVTESPNNIL 212
              +      + P +  +DH  GF T     +L
Sbjct: 296 GERSEKIRTYNFPQSRVTDHRIGFTTHDLEGVL 328


>pdb|3ZZP|A Chain A, Circular Permutant Of Ribosomal Protein S6, Lacking Edge
           Strand Beta-2 Of Wild-Type S6
          Length = 77

 Score = 28.9 bits (63), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 28/49 (57%)

Query: 143 DPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHL 191
           DP   TT Y+++  E  + +  +++RIR ++   +  +S+TP   + ++
Sbjct: 2   DPQGYTTWYQVEMPEDRVNDLARELRIRDNVRRVMVVASTTPGRYEVNI 50


>pdb|3VD0|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD0|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|K Chain K, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD1|L Chain L, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|A Chain A, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|B Chain B, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|C Chain C, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|D Chain D, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|I Chain I, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|3VD2|J Chain J, Structure Of P73 Dna Binding Domain Tetramer Modulates P73
           Transactivation
 pdb|4G82|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
           To A Full Response-element
 pdb|4G82|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
           To A Full Response-element
 pdb|4G83|A Chain A, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
           To A Full Response-element
 pdb|4G83|B Chain B, Crystal Structure Of P73 Dna-binding Domain Tetramer Bound
           To A Full Response-element
          Length = 210

 Score = 27.7 bits (60), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 12  ENTTNRQVTFSKRRNGLVKKAY-ELSVLCDVDVALIMFSPSG-RVSLFSGNKSMEEILAR 69
           +++T +  T++   + L+KK Y +++  C + + +    P G  +      K  E +   
Sbjct: 31  QSSTAKSATWTY--SPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDV 88

Query: 70  YVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDS 114
               P HE GR  N+     A   +R E N   Q   +P T   S
Sbjct: 89  VKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQS 133


>pdb|2XWC|A Chain A, Crystal Structure Of The Dna Binding Domain Of Human Tp73
           Refined At 1.8 A Resolution
 pdb|4A63|A Chain A, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
 pdb|4A63|C Chain C, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
 pdb|4A63|E Chain E, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
 pdb|4A63|G Chain G, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
 pdb|4A63|I Chain I, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
 pdb|4A63|K Chain K, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
           Resolution
          Length = 208

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 25/105 (23%), Positives = 44/105 (41%), Gaps = 4/105 (3%)

Query: 12  ENTTNRQVTFSKRRNGLVKKAY-ELSVLCDVDVALIMFSPSG-RVSLFSGNKSMEEILAR 69
           +++T +  T++   + L+KK Y +++  C + + +    P G  +      K  E +   
Sbjct: 23  QSSTAKSATWTY--SPLLKKLYCQIAKTCPIQIKVSTPPPPGTAIRAMPVYKKAEHVTDV 80

Query: 70  YVNLPEHERGRLRNQEFLQRALGKLRSEANQTYQATSNPTTNTDS 114
               P HE GR  N+     A   +R E N   Q   +P T   S
Sbjct: 81  VKRCPNHELGRDFNEGQSAPASHLIRVEGNNLSQYVDDPVTGRQS 125


>pdb|3QPR|A Chain A, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|B Chain B, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|C Chain C, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|D Chain D, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|E Chain E, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|F Chain F, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
 pdb|3QPR|G Chain G, Hk97 Prohead I Encapsidating Inactive Virally Encoded
           Protease
          Length = 385

 Score = 27.7 bits (60), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 20/85 (23%), Positives = 37/85 (43%)

Query: 103 QATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEE 162
           ++T   +    S L +VQ+E+ K  +++ ++E++L    E+P E  +  E    E I   
Sbjct: 30  ESTGQVSKQLQSDLMKVQEELTKSGTRLFDLEQKLASGAENPGEKKSFSERAAEELIKSW 89

Query: 163 TLKQVRIRKHLLEEICNSSSTPATS 187
             KQ         +   S +  A S
Sbjct: 90  DGKQGTFGAKTFNKSLGSDADSAGS 114


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.131    0.371 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,033,714
Number of Sequences: 62578
Number of extensions: 371582
Number of successful extensions: 841
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 829
Number of HSP's gapped (non-prelim): 22
length of query: 310
length of database: 14,973,337
effective HSP length: 99
effective length of query: 211
effective length of database: 8,778,115
effective search space: 1852182265
effective search space used: 1852182265
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 51 (24.3 bits)