Query 046530
Match_columns 310
No_of_seqs 211 out of 1654
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 13:02:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046530.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046530hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0014 MADS box transcription 100.0 3E-31 6.5E-36 235.3 5.2 162 1-173 1-170 (195)
2 cd00265 MADS_MEF2_like MEF2 (m 99.9 6.6E-28 1.4E-32 186.1 2.0 72 2-74 1-72 (77)
3 cd00266 MADS_SRF_like SRF-like 99.9 5.5E-27 1.2E-31 183.4 3.2 79 2-80 1-79 (83)
4 smart00432 MADS MADS domain. 99.9 4.4E-25 9.6E-30 161.9 2.7 58 2-59 1-58 (59)
5 cd00120 MADS MADS: MCM1, Agamo 99.9 9.2E-25 2E-29 160.3 2.3 58 2-59 1-58 (59)
6 PF00319 SRF-TF: SRF-type tran 99.8 1.9E-23 4.2E-28 148.8 -3.3 51 9-59 1-51 (51)
7 KOG0015 Regulator of arginine 99.7 5.9E-18 1.3E-22 157.6 1.2 64 2-66 63-126 (338)
8 COG5068 ARG80 Regulator of arg 99.2 2.8E-12 6.2E-17 124.5 1.4 58 1-58 81-138 (412)
9 PF01486 K-box: K-box region; 99.2 1.4E-10 3E-15 93.5 8.8 67 108-174 6-72 (100)
10 PF07106 TBPIP: Tat binding pr 87.3 6.8 0.00015 34.1 10.0 57 116-173 111-167 (169)
11 PHA03155 hypothetical protein; 74.3 25 0.00055 29.2 8.1 59 113-171 7-65 (115)
12 PHA03162 hypothetical protein; 70.3 49 0.0011 28.3 9.1 61 111-171 10-74 (135)
13 PRK04098 sec-independent trans 69.8 4.7 0.0001 35.4 3.1 47 116-169 56-102 (158)
14 PF05812 Herpes_BLRF2: Herpesv 67.2 42 0.00092 28.1 8.1 58 114-171 3-64 (118)
15 PF07106 TBPIP: Tat binding pr 61.2 62 0.0014 28.0 8.6 62 115-176 73-137 (169)
16 PF10584 Proteasome_A_N: Prote 56.5 3.9 8.5E-05 24.5 0.1 14 43-56 3-16 (23)
17 PF06698 DUF1192: Protein of u 54.6 29 0.00063 25.5 4.5 32 140-171 13-44 (59)
18 COG3883 Uncharacterized protei 45.7 1.2E+02 0.0027 28.8 8.3 27 150-176 79-105 (265)
19 COG4575 ElaB Uncharacterized c 42.8 1.5E+02 0.0032 24.4 7.2 52 116-175 10-61 (104)
20 KOG4603 TBP-1 interacting prot 42.4 2.3E+02 0.005 25.5 8.9 58 116-174 118-175 (201)
21 PF13870 DUF4201: Domain of un 41.8 1.9E+02 0.004 25.2 8.5 59 115-174 7-65 (177)
22 PF12761 End3: Actin cytoskele 40.6 2.9E+02 0.0062 25.2 9.8 24 152-175 168-191 (195)
23 PF10491 Nrf1_DNA-bind: NLS-bi 39.0 22 0.00047 32.6 2.1 41 32-73 45-88 (214)
24 PF15058 Speriolin_N: Sperioli 36.7 1.2E+02 0.0027 27.5 6.5 57 114-194 5-61 (200)
25 COG1579 Zn-ribbon protein, pos 35.6 1.5E+02 0.0033 27.7 7.2 20 117-136 55-74 (239)
26 KOG4603 TBP-1 interacting prot 35.3 1.3E+02 0.0029 27.0 6.3 64 114-177 79-145 (201)
27 PF15188 CCDC-167: Coiled-coil 35.0 2.3E+02 0.0049 22.4 7.4 54 115-174 6-59 (85)
28 KOG0994 Extracellular matrix g 35.0 2.4E+02 0.0051 32.6 9.4 63 112-174 1223-1290(1758)
29 PF06657 Cep57_MT_bd: Centroso 34.3 2.2E+02 0.0047 22.0 8.7 59 115-177 18-76 (79)
30 PF14193 DUF4315: Domain of un 33.9 78 0.0017 24.8 4.2 26 116-141 3-28 (83)
31 PF00804 Syntaxin: Syntaxin; 33.8 2E+02 0.0043 21.7 6.7 63 115-177 8-71 (103)
32 KOG0971 Microtubule-associated 31.9 1.4E+02 0.003 33.4 7.0 56 114-169 325-389 (1243)
33 PF06717 DUF1202: Protein of u 31.3 2.1E+02 0.0045 27.7 7.3 52 87-149 136-187 (308)
34 PRK04654 sec-independent trans 30.7 1.1E+02 0.0024 28.2 5.3 11 42-52 14-24 (214)
35 KOG3570 MAPK-activating protei 30.5 1.3E+02 0.0029 33.5 6.6 23 63-85 1286-1308(1588)
36 TIGR03185 DNA_S_dndD DNA sulfu 27.8 2.7E+02 0.0058 29.5 8.4 35 147-181 258-292 (650)
37 TIGR01478 STEVOR variant surfa 27.1 1.9E+02 0.0041 27.9 6.4 45 7-72 25-69 (295)
38 PF04977 DivIC: Septum formati 25.9 1E+02 0.0022 22.6 3.7 25 116-140 26-50 (80)
39 PF08432 Vfa1: AAA-ATPase Vps4 25.1 1.4E+02 0.0031 26.4 5.0 24 116-139 64-87 (182)
40 PF13082 DUF3931: Protein of u 24.8 29 0.00062 25.1 0.4 38 4-41 6-45 (66)
41 COG3883 Uncharacterized protei 24.7 2.7E+02 0.0058 26.6 6.9 25 116-140 61-85 (265)
42 PF02841 GBP_C: Guanylate-bind 24.5 5E+02 0.011 24.5 8.9 26 48-75 144-169 (297)
43 PRK10265 chaperone-modulator p 24.4 1.1E+02 0.0025 24.4 3.8 27 116-142 73-99 (101)
44 COG4892 Predicted heme/steroid 23.7 40 0.00086 25.9 0.9 22 284-305 25-47 (81)
45 PF04201 TPD52: Tumour protein 23.5 94 0.002 27.5 3.4 59 111-173 26-91 (162)
46 PRK09039 hypothetical protein; 23.5 2E+02 0.0043 28.2 6.1 51 114-166 137-187 (343)
47 PF06008 Laminin_I: Laminin Do 23.5 3.1E+02 0.0067 25.4 7.2 56 115-171 88-143 (264)
48 TIGR02894 DNA_bind_RsfA transc 23.3 5.2E+02 0.011 22.8 7.9 24 117-140 107-130 (161)
49 PRK10884 SH3 domain-containing 23.1 5.7E+02 0.012 23.2 9.6 21 117-137 121-141 (206)
50 KOG4010 Coiled-coil protein TP 22.0 1.2E+02 0.0027 27.4 3.9 59 115-174 45-107 (208)
51 KOG4797 Transcriptional regula 21.8 1.4E+02 0.003 24.9 3.8 24 119-142 65-88 (123)
52 PRK11637 AmiB activator; Provi 21.8 4.5E+02 0.0097 26.2 8.3 20 152-171 111-130 (428)
53 KOG0250 DNA repair protein RAD 20.8 5.5E+02 0.012 29.3 9.2 29 112-140 687-715 (1074)
54 PF14282 FlxA: FlxA-like prote 20.7 4.5E+02 0.0098 21.1 8.2 53 120-174 18-70 (106)
55 TIGR02338 gimC_beta prefoldin, 20.6 2.8E+02 0.0061 22.3 5.5 57 114-176 10-81 (110)
56 PRK11637 AmiB activator; Provi 20.1 5.4E+02 0.012 25.6 8.5 25 151-175 103-127 (428)
57 PF14723 SSFA2_C: Sperm-specif 20.0 1.3E+02 0.0028 27.0 3.5 22 116-137 107-128 (179)
No 1
>KOG0014 consensus MADS box transcription factor [Transcription]
Probab=99.97 E-value=3e-31 Score=235.33 Aligned_cols=162 Identities=40% Similarity=0.578 Sum_probs=120.7
Q ss_pred CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCC-chhHHHHHhhcCCchhhhc
Q 046530 1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGN-KSMEEILARYVNLPEHERG 79 (310)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~-~sve~VI~RY~~lpe~~r~ 79 (310)
|||+||+|++|+|+++|+|||+|||.||||||+||||||||+||+|||||+|++|.|++. .++.+|++||...++..+.
T Consensus 1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 80 (195)
T KOG0014|consen 1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK 80 (195)
T ss_pred CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence 999999999999999999999999999999999999999999999999999999988543 3399999999998887764
Q ss_pred -ccccHH-HHHHH-HhhhhhhhhhhccccCCCCCCCchhHHHHHHHHHHHHHHHHHHH---HHHhhhcCCCCCCCCH-HH
Q 046530 80 -RLRNQE-FLQRA-LGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNME---KRLRIFEEDPSEMTTL-YE 152 (310)
Q Consensus 80 -k~~~~e-~l~~~-l~Kl~~~~~~~~q~~ss~~~~~d~~lEeLq~Ei~kLk~qie~le---~~lR~~~Gd~l~~lSl-~E 152 (310)
+..+.+ ++... +.++..+... .....+....+...++...+.++ ...+.+.|..+..++. .+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~l~~~~~ 149 (195)
T KOG0014|consen 81 KKRVNLESFLRNKKLTELVEEEEK-----------EELKLQLKKSLESSLKVDPEDLELLELEQRKLTGEDLQSLSSLNE 149 (195)
T ss_pred ccccchhhHhhhhhhhcccchhhh-----------hhccchhhhhhhhhhhcchhhhhhhHHHHHHHhccccccCCHHHH
Confidence 333333 44333 1111110000 00000123334444555555544 3467888999999998 99
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046530 153 IKHREQILEETLKQVRIRKHL 173 (310)
Q Consensus 153 L~~LE~~LE~sL~rVR~RK~~ 173 (310)
|..++.+|+.++..+|.++..
T Consensus 150 l~~~~~~l~~~~~~~~~~~~~ 170 (195)
T KOG0014|consen 150 LNSLESQLESSLHNSRSSKSK 170 (195)
T ss_pred hcchhhHHHHhhcCCCCCCCc
Confidence 999999999999999888843
No 2
>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.94 E-value=6.6e-28 Score=186.08 Aligned_cols=72 Identities=68% Similarity=0.989 Sum_probs=68.8
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCc
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLP 74 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lp 74 (310)
||+||+|++|+|+..|++||+|||.||||||+|||+||||+||+|||||+|+++.|++ +++++||+||.+.+
T Consensus 1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s-~s~~~vl~ry~~~~ 72 (77)
T cd00265 1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS-PSMEKIIERYQKTS 72 (77)
T ss_pred CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC-CCHHHHHHHHHhcc
Confidence 8999999999999999999999999999999999999999999999999999999964 67899999998764
No 3
>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators. Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.93 E-value=5.5e-27 Score=183.39 Aligned_cols=79 Identities=51% Similarity=0.820 Sum_probs=73.1
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCchhhhcc
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGR 80 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe~~r~k 80 (310)
||+||+|++|+|+.+|++||+|||.||||||+||||||||+||+|||||+|+++.|++..++..+|++|..+++.++.+
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 79 (83)
T cd00266 1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSEVEGVISRFEVLSALERKK 79 (83)
T ss_pred CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHHHHHHHHHHhhcCHhhhhc
Confidence 8999999999999999999999999999999999999999999999999999888865445999999999998876653
No 4
>smart00432 MADS MADS domain.
Probab=99.90 E-value=4.4e-25 Score=161.90 Aligned_cols=58 Identities=72% Similarity=1.079 Sum_probs=56.2
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG 59 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~ 59 (310)
||+||+|++|+|++.|++||+|||.||+|||+|||+||||+||+|||||+|+++.|++
T Consensus 1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T smart00432 1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58 (59)
T ss_pred CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccC
Confidence 8999999999999999999999999999999999999999999999999999998853
No 5
>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators. Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.
Probab=99.90 E-value=9.2e-25 Score=160.27 Aligned_cols=58 Identities=71% Similarity=1.023 Sum_probs=56.4
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG 59 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~ 59 (310)
||+||+|++|+|+..|++||+|||.||+|||+|||+||||+||+|||||+|+++.|++
T Consensus 1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~ 58 (59)
T cd00120 1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWS 58 (59)
T ss_pred CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccC
Confidence 8999999999999999999999999999999999999999999999999999999864
No 6
>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation. SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....
Probab=99.85 E-value=1.9e-23 Score=148.78 Aligned_cols=51 Identities=65% Similarity=1.002 Sum_probs=46.6
Q ss_pred EEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccC
Q 046530 9 KRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSG 59 (310)
Q Consensus 9 k~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~ 59 (310)
|+|+|++.|++||+|||.||||||+|||+||||+||+|||||+|+++.||+
T Consensus 1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s 51 (51)
T PF00319_consen 1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS 51 (51)
T ss_dssp S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence 589999999999999999999999999999999999999999999999974
No 7
>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.68 E-value=5.9e-18 Score=157.58 Aligned_cols=64 Identities=47% Similarity=0.736 Sum_probs=58.6
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHH
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEI 66 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~V 66 (310)
||+||+|++|+|+.+|.+||+|||.||||||+|||||+|.+|.|+|.|++|-+|+|+ .+.++-|
T Consensus 63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFa-TpKLep~ 126 (338)
T KOG0015|consen 63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TPKLEPM 126 (338)
T ss_pred ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEec-ccccccc
Confidence 799999999999999999999999999999999999999999999999999999994 3433333
No 8
>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]
Probab=99.21 E-value=2.8e-12 Score=124.54 Aligned_cols=58 Identities=47% Similarity=0.676 Sum_probs=56.8
Q ss_pred CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCcccccc
Q 046530 1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFS 58 (310)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~ 58 (310)
|||+||.|.+|+|+.+|.|||+|||.||+|||+||++|+|.+|.++|.|.+|+++.|+
T Consensus 81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~ 138 (412)
T COG5068 81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFT 138 (412)
T ss_pred cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeec
Confidence 7999999999999999999999999999999999999999999999999999999995
No 9
>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development. The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=99.16 E-value=1.4e-10 Score=93.51 Aligned_cols=67 Identities=40% Similarity=0.459 Sum_probs=63.8
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 108 PTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 108 ~~~~~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
+...++..++.++.|+++++.+++.++..+|++.|++++.+|++||..||++|+.+|.+||+||..+
T Consensus 6 ~~~~~~~~~e~~~~e~~~L~~~~~~L~~~~R~~~GedL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~ 72 (100)
T PF01486_consen 6 GTDLWDSQHEELQQEIAKLRKENESLQKELRHLMGEDLESLSLKELQQLEQQLESALKRVRSRKDQL 72 (100)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 3447889999999999999999999999999999999999999999999999999999999999887
No 10
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=87.35 E-value=6.8 Score=34.07 Aligned_cols=57 Identities=23% Similarity=0.293 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHL 173 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~ 173 (310)
.+++..++..++.+++.++.++..+.+ .....|.+|...++.......+..+.||..
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~-~~~~vs~ee~~~~~~~~~~~~k~w~kRKri 167 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRS-GSKPVSPEEKEKLEKEYKKWRKEWKKRKRI 167 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999988876 445578999999999999999999999854
No 11
>PHA03155 hypothetical protein; Provisional
Probab=74.27 E-value=25 Score=29.21 Aligned_cols=59 Identities=20% Similarity=0.188 Sum_probs=46.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 113 DSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 113 d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
+..+|+|..|+.+|+-++..|.+.++.-.+++...+|-.+=+.+-.....+|.+.-++|
T Consensus 7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p~d~~LT~~qKea~I~s~v~~Lt~~A~~K 65 (115)
T PHA03155 7 CADVEELEKELQKLKIENKALKKKLLQHGNPEDELLTPAQKDAIINSLVNKLTKKAEEK 65 (115)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHccCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34589999999999999999999997755566678888888777777777775544444
No 12
>PHA03162 hypothetical protein; Provisional
Probab=70.29 E-value=49 Score=28.27 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=45.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC----CCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 111 NTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDP----SEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 111 ~~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~----l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
-....+|+|..|+.+|+-++..|.+.++.-.|.+ ...++-.+=+.+-......|.+.-++|
T Consensus 10 k~~~tmEeLaaeL~kLqmENK~LKkkl~~~~~~~~~p~d~~LTp~qKea~I~s~v~~Lts~A~kK 74 (135)
T PHA03162 10 KAQPTMEDLAAEIAKLQLENKALKKKIKEGTDDDPLPGDPILTPAAKEAMIGAATAALTRQAAKK 74 (135)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445689999999999999999999997765554 456888877777666666665444444
No 13
>PRK04098 sec-independent translocase; Provisional
Probab=69.80 E-value=4.7 Score=35.38 Aligned_cols=47 Identities=19% Similarity=0.314 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRI 169 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~ 169 (310)
+.+++.++.++++.++.....+|.. +++++|...-.-+....+.+..
T Consensus 56 ~~elk~e~~k~k~~l~~~~~~l~~~-------~~~eel~~~~~~~~~~~~~~~~ 102 (158)
T PRK04098 56 IEEIKEEALKYKKEFESAVESLKKK-------LKFEELDDLKITAENEIKSIQD 102 (158)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhc-------cChHHHHHHhhhhhhcchhHHH
Confidence 5678889999999998888888743 6788888776555554444433
No 14
>PF05812 Herpes_BLRF2: Herpesvirus BLRF2 protein; InterPro: IPR008642 This family consists of several herpes virus BLRF2 tegument proteins.; PDB: 2OA5_B 2H3R_D.
Probab=67.17 E-value=42 Score=28.09 Aligned_cols=58 Identities=19% Similarity=0.152 Sum_probs=41.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcC----CCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEE----DPSEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~G----d~l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
..+|+|..|+.+|+-++..|.+.++.-.| .+...+|-.+=+.+-.....+|...-.+|
T Consensus 3 ~t~EeLaaeL~kLqmENk~LKkkl~~~~~p~~~p~~~~LTp~qKe~~I~s~~~~Lss~A~~K 64 (118)
T PF05812_consen 3 MTMEELAAELQKLQMENKALKKKLRQSVGPGPSPDDEVLTPAQKEAMITSAVSKLSSQASKK 64 (118)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT---S-TT--B--HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccccChHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999999999999999988766 56778888887777777776665544444
No 15
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=61.17 E-value=62 Score=27.99 Aligned_cols=62 Identities=21% Similarity=0.344 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEED---PSEMTTLYEIKHREQILEETLKQVRIRKHLLEE 176 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd---~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~ 176 (310)
.+..+..++..|+.++..++...+.+..+ -...+|.+||...-..|+.-+..+..|-..|.+
T Consensus 73 el~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l~~ 137 (169)
T PF07106_consen 73 ELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKLRS 137 (169)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445555555555555555444433222 235678899999999999999999999888744
No 16
>PF10584 Proteasome_A_N: Proteasome subunit A N-terminal signature; InterPro: IPR000426 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). This family contains the alpha subunit sequences which range from 210 to 290 amino acids. These sequences are classified as non-peptidase homologues in MEROPS peptidase family T1 (clan PB(T)). ; GO: 0004175 endopeptidase activity, 0006511 ubiquitin-dependent protein catabolic process, 0019773 proteasome core complex, alpha-subunit complex; PDB: 3H4P_M 1IRU_O 3UN4_U 1FNT_A 3OEV_G 3OEU_U 3SDK_U 3DY3_G 3MG7_G 3L5Q_C ....
Probab=56.52 E-value=3.9 Score=24.52 Aligned_cols=14 Identities=36% Similarity=0.636 Sum_probs=11.2
Q ss_pred eeehhcCCCCcccc
Q 046530 43 VALIMFSPSGRVSL 56 (310)
Q Consensus 43 v~livfsp~gk~~~ 56 (310)
..+.+|||+|+++.
T Consensus 3 ~~~t~FSp~Grl~Q 16 (23)
T PF10584_consen 3 RSITTFSPDGRLFQ 16 (23)
T ss_dssp SSTTSBBTTSSBHH
T ss_pred CCceeECCCCeEEe
Confidence 45679999999865
No 17
>PF06698 DUF1192: Protein of unknown function (DUF1192); InterPro: IPR009579 This family consists of several short, hypothetical, bacterial proteins of around 60 residues in length. The function of this family is unknown.
Probab=54.63 E-value=29 Score=25.54 Aligned_cols=32 Identities=13% Similarity=0.184 Sum_probs=26.5
Q ss_pred hcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 140 FEEDPSEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 140 ~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
..|++|+.+|++||...-..|+.=+.|++...
T Consensus 13 ~ig~dLs~lSv~EL~~RIa~L~aEI~R~~~~~ 44 (59)
T PF06698_consen 13 EIGEDLSLLSVEELEERIALLEAEIARLEAAI 44 (59)
T ss_pred ccCCCchhcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 45889999999999999989988888887543
No 18
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.75 E-value=1.2e+02 Score=28.82 Aligned_cols=27 Identities=26% Similarity=0.319 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 150 LYEIKHREQILEETLKQVRIRKHLLEE 176 (310)
Q Consensus 150 l~EL~~LE~~LE~sL~rVR~RK~~L~~ 176 (310)
=.++..++..+...=.+|+.|++.|..
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~~ 105 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLKK 105 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 347788889999999999999998843
No 19
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=42.80 E-value=1.5e+02 Score=24.39 Aligned_cols=52 Identities=17% Similarity=0.146 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLE 175 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~ 175 (310)
++++..|+..| ++.++.-++-+ | ..+-+|+..+-..++..|+++|.|.....
T Consensus 10 ~~~l~~el~~L---~d~lEevL~ss-g----~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~ 61 (104)
T COG4575 10 IDQLLAELQEL---LDTLEEVLKSS-G----SLAGDEAEELRSKAESALKEARDRLGDTG 61 (104)
T ss_pred HHHHHHHHHHH---HHHHHHHHHhc-c----cchhhHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 35666676666 44455556655 3 36788999999999999999999987763
No 20
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=42.39 E-value=2.3e+02 Score=25.48 Aligned_cols=58 Identities=22% Similarity=0.287 Sum_probs=48.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
++++|.++.+|+++...+.+++..+. ......+.++-.+.+..-+...+.-|.||.-.
T Consensus 118 ~eemQe~i~~L~kev~~~~erl~~~k-~g~~~vtpedk~~v~~~y~~~~~~wrk~krmf 175 (201)
T KOG4603|consen 118 TEEMQEEIQELKKEVAGYRERLKNIK-AGTNHVTPEDKEQVYREYQKYCKEWRKRKRMF 175 (201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 68899999999999999999998774 44566788999999999999988888888643
No 21
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=41.76 E-value=1.9e+02 Score=25.20 Aligned_cols=59 Identities=17% Similarity=0.237 Sum_probs=36.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
.++.+.-....++.++..++.+++... +-.+++++-+..+|.-.-..-..+|.+|-..|
T Consensus 7 ~i~~~Rl~~~~lk~~l~k~~~ql~~ke-~lge~L~~iDFeqLkien~~l~~kIeERn~eL 65 (177)
T PF13870_consen 7 EISKLRLKNITLKHQLAKLEEQLRQKE-ELGEGLHLIDFEQLKIENQQLNEKIEERNKEL 65 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566666667777777777666653 33456666666666666666666666666655
No 22
>PF12761 End3: Actin cytoskeleton-regulatory complex protein END3
Probab=40.56 E-value=2.9e+02 Score=25.19 Aligned_cols=24 Identities=13% Similarity=0.243 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 152 EIKHREQILEETLKQVRIRKHLLE 175 (310)
Q Consensus 152 EL~~LE~~LE~sL~rVR~RK~~L~ 175 (310)
+|..+|+|++..=..++.||..|.
T Consensus 168 Dl~~ie~QV~~Le~~L~~k~~eL~ 191 (195)
T PF12761_consen 168 DLDTIEEQVDGLESHLSSKKQELQ 191 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888888777777788888874
No 23
>PF10491 Nrf1_DNA-bind: NLS-binding and DNA-binding and dimerisation domains of Nrf1; InterPro: IPR019525 Nuclear respiratory factor-1 is a transcriptional activator that has been implicated in the nuclear control of respiratory chain expression in vertebrates. The first 26 amino acids of nuclear respiratory factor-1 are required for the binding of dynein light chain. The interaction with dynein light chain is observed for both ewg and Nrf-1, transcription factors that are structurally and functionally similar between humans and Drosophila []. In Drosophila, the erect wing (ewg) protein is required for proper development of the central nervous system and the indirect flight muscles. The fly ewg gene encodes a novel DNA-binding domain that is also found in four genes previously identified in sea urchin, chicken, zebrafish, and human []. The highest level of expression of both ewg and Nrf-1 was found in the central nervous system, somites, first branchial arch, optic vesicle, and otic vesicle. In the mouse Nrf-1 protein, Q8C4C0 from SWISSPROT, there is also an NLS domain at 88-116, and a DNA binding and dimerisation domain at 127-282. Ewg is a site-specific transcriptional activator, and evolutionarily conserved regions of ewg contribute both positively and negatively to transcriptional activity [].
Probab=38.95 E-value=22 Score=32.64 Aligned_cols=41 Identities=15% Similarity=0.298 Sum_probs=34.2
Q ss_pred hhhhhcccCcceeehhcCCCC---ccccccCCchhHHHHHhhcCC
Q 046530 32 AYELSVLCDVDVALIMFSPSG---RVSLFSGNKSMEEILARYVNL 73 (310)
Q Consensus 32 a~ELs~LC~~~v~livfsp~g---k~~~~~~~~sve~VI~RY~~l 73 (310)
..|++|-+|-+++|++.+|+. ...+| |...++.||..|+..
T Consensus 45 ~de~~trvGqqavvl~~~p~kp~~~f~vf-Ga~pL~~vv~~~~~~ 88 (214)
T PF10491_consen 45 IDEYTTRVGQQAVVLCCTPSKPNPVFKVF-GAAPLENVVRNLKPV 88 (214)
T ss_pred HHHHHHhhhceeEEEEecCCCCCCceeee-cchhHHHHHHHHHHH
Confidence 579999999999999999976 23445 778899999999763
No 24
>PF15058 Speriolin_N: Speriolin N terminus
Probab=36.73 E-value=1.2e+02 Score=27.53 Aligned_cols=57 Identities=23% Similarity=0.472 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCCCCCccccCC
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICNSSSTPATSQAHLPP 193 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~~~~~~~~~~~~q~~Lp~ 193 (310)
..+|-+.+++++|-.+++++++..|.+..+ +.|..+ |.+.|.+....+.+.+-+|.
T Consensus 5 ~~yeGlrhqierLv~ENeeLKKlVrLirEN--------------~eLksa----------L~ea~~~~~~r~~~~vf~pp 60 (200)
T PF15058_consen 5 TNYEGLRHQIERLVRENEELKKLVRLIREN--------------HELKSA----------LGEACAEPSQRQGNDVFLPP 60 (200)
T ss_pred cchHHHHHHHHHHHhhhHHHHHHHHHHHHH--------------HHHHHH----------HHHhhcccccccCCceecCC
Confidence 347889999999999999999998876411 112111 78888887766655555555
Q ss_pred C
Q 046530 194 A 194 (310)
Q Consensus 194 ~ 194 (310)
.
T Consensus 61 ~ 61 (200)
T PF15058_consen 61 S 61 (200)
T ss_pred C
Confidence 4
No 25
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=35.57 E-value=1.5e+02 Score=27.72 Aligned_cols=20 Identities=25% Similarity=0.597 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046530 117 EEVQQEIVKCKSQIQNMEKR 136 (310)
Q Consensus 117 EeLq~Ei~kLk~qie~le~~ 136 (310)
+.+..++..+..++..+..+
T Consensus 55 e~le~qv~~~e~ei~~~r~r 74 (239)
T COG1579 55 EDLENQVSQLESEIQEIRER 74 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444443333
No 26
>KOG4603 consensus TBP-1 interacting protein [Signal transduction mechanisms]
Probab=35.28 E-value=1.3e+02 Score=26.98 Aligned_cols=64 Identities=19% Similarity=0.214 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEED---PSEMTTLYEIKHREQILEETLKQVRIRKHLLEEI 177 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd---~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~~ 177 (310)
..+..|..++.+|..+...++...+..+.+ ..+.+|++|++.--+.|.+-...-|.|...+.+-
T Consensus 79 eel~~ld~~i~~l~ek~q~l~~t~s~veaEik~L~s~Lt~eemQe~i~~L~kev~~~~erl~~~k~g 145 (201)
T KOG4603|consen 79 EELQVLDGKIVALTEKVQSLQQTCSYVEAEIKELSSALTTEEMQEEIQELKKEVAGYRERLKNIKAG 145 (201)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445667778888888888777777766544 2457888998888888888888888887776443
No 27
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=35.04 E-value=2.3e+02 Score=22.41 Aligned_cols=54 Identities=17% Similarity=0.327 Sum_probs=40.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
+++.+...++..+.+++.++.++|.- .+|-++=..+|..+..-.+++..--++|
T Consensus 6 eId~lEekl~~cr~~le~ve~rL~~~------eLs~e~R~~lE~E~~~l~~~l~~~E~eL 59 (85)
T PF15188_consen 6 EIDGLEEKLAQCRRRLEAVESRLRRR------ELSPEARRSLEKELNELKEKLENNEKEL 59 (85)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHccc------CCChHHHHHHHHHHHHHHHHhhccHHHH
Confidence 46678888889999999999988754 3677777778877777666666555555
No 28
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=34.99 E-value=2.4e+02 Score=32.64 Aligned_cols=63 Identities=13% Similarity=0.119 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 112 TDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPS-----EMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 112 ~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l-----~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
....++++..++..|+++|..+...|...+-... ..++-.+|+.|+...+..++-++.-++++
T Consensus 1223 s~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~LesLq~~~~~l~~~~keL~e~~ 1290 (1758)
T KOG0994|consen 1223 SAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLESLQREFNGLLTTYKELREQL 1290 (1758)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445777888888888888888777766543322 23345789999888777666666666655
No 29
>PF06657 Cep57_MT_bd: Centrosome microtubule-binding domain of Cep57; InterPro: IPR010597 This entry is thought to represent a centrosomal protein of 57 kDa (Cep57-related protein). It is required for spindle microtubule attachment to both kinetochores and centrosomes and functions to tether minus-ends of spindle microtubules to centrosomes. It may act by forming ring-like structures around microtubules, or by serving as a cross-linker or scaffold at the attachment site [].
Probab=34.33 E-value=2.2e+02 Score=21.95 Aligned_cols=59 Identities=19% Similarity=0.244 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEI 177 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~~ 177 (310)
-+..++.|+.-++-+...++..++.+. ...+...=..|+..|+..++++-.+-.++...
T Consensus 18 vl~~LqDE~~hm~~e~~~L~~~~~~~d----~s~~~~~R~~L~~~l~~lv~~mE~K~dQI~~L 76 (79)
T PF06657_consen 18 VLKALQDEFGHMKMEHQELQDEYKQMD----PSLGRRKRRDLEQELEELVKRMEAKADQIYKL 76 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc----cccChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356678888888888888887777763 35567788888999999999988887776443
No 30
>PF14193 DUF4315: Domain of unknown function (DUF4315)
Probab=33.89 E-value=78 Score=24.84 Aligned_cols=26 Identities=38% Similarity=0.636 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFE 141 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~ 141 (310)
++.+..+|.|.+.++.+++.+++.+.
T Consensus 3 leKi~~eieK~k~Kiae~Q~rlK~Le 28 (83)
T PF14193_consen 3 LEKIRAEIEKTKEKIAELQARLKELE 28 (83)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777777777766553
No 31
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=33.83 E-value=2e+02 Score=21.73 Aligned_cols=63 Identities=14% Similarity=0.290 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTT-LYEIKHREQILEETLKQVRIRKHLLEEI 177 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lS-l~EL~~LE~~LE~sL~rVR~RK~~L~~~ 177 (310)
.+++++..+.+++..++.+....+.....+..... -++|..|-..+......++.+...|...
T Consensus 8 ~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 8 EVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667778888888877777766555433221111 2356666666666666666666666443
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=31.88 E-value=1.4e+02 Score=33.37 Aligned_cols=56 Identities=25% Similarity=0.419 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhc------CCCCCCCCHHHHHHHH---HHHHHHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFE------EDPSEMTTLYEIKHRE---QILEETLKQVRI 169 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~------Gd~l~~lSl~EL~~LE---~~LE~sL~rVR~ 169 (310)
...+.||+|+..+++++++|+..+..+. |-+.-..|--++.+|| ..|.++|-|+|.
T Consensus 325 ERaesLQ~eve~lkEr~deletdlEILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRD 389 (1243)
T KOG0971|consen 325 ERAESLQQEVEALKERVDELETDLEILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRD 389 (1243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567799999999999999998886654 3333344545555555 557777766653
No 33
>PF06717 DUF1202: Protein of unknown function (DUF1202); InterPro: IPR009592 This family consists of several hypothetical bacterial proteins of around 335 residues in length. Members of this family are found exclusively in Escherichia coli and Salmonella species and are often referred to as YggM proteins. The function of this family is unknown.
Probab=31.30 E-value=2.1e+02 Score=27.71 Aligned_cols=52 Identities=12% Similarity=0.247 Sum_probs=39.1
Q ss_pred HHHHHhhhhhhhhhhccccCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC
Q 046530 87 LQRALGKLRSEANQTYQATSNPTTNTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTT 149 (310)
Q Consensus 87 l~~~l~Kl~~~~~~~~q~~ss~~~~~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lS 149 (310)
+..++.+++.+... ....+..|+.++.+|++++..++++...|||.+-++-.
T Consensus 136 F~~rf~~Ied~~~~-----------kK~~I~~L~~qisaLdkqi~ai~Kkid~yWgkda~gk~ 187 (308)
T PF06717_consen 136 FNYRFNQIEDEYNR-----------KKNKIPGLNKQISALDKQIVAINKKIDRYWGKDANGKQ 187 (308)
T ss_pred HHHHHHHHHHHHHH-----------HhhhhHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCc
Confidence 45567777766431 12346789999999999999999999999998766653
No 34
>PRK04654 sec-independent translocase; Provisional
Probab=30.71 E-value=1.1e+02 Score=28.18 Aligned_cols=11 Identities=36% Similarity=0.631 Sum_probs=8.2
Q ss_pred ceeehhcCCCC
Q 046530 42 DVALIMFSPSG 52 (310)
Q Consensus 42 ~v~livfsp~g 52 (310)
=|+||||+|..
T Consensus 14 VVALlV~GPer 24 (214)
T PRK04654 14 VVALVVLGPER 24 (214)
T ss_pred HHHHHhcCchH
Confidence 47889998854
No 35
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=30.53 E-value=1.3e+02 Score=33.49 Aligned_cols=23 Identities=43% Similarity=0.829 Sum_probs=18.4
Q ss_pred hHHHHHhhcCCchhhhcccccHH
Q 046530 63 MEEILARYVNLPEHERGRLRNQE 85 (310)
Q Consensus 63 ve~VI~RY~~lpe~~r~k~~~~e 85 (310)
-.++|+||..+.+++|++++.-|
T Consensus 1286 P~EMidRY~sL~eserKRLE~dE 1308 (1588)
T KOG3570|consen 1286 PQEMIDRYLSLGEHDRKRLEDDE 1308 (1588)
T ss_pred hHHHHHHHHhhchhhhhhhcccH
Confidence 34789999999999998765544
No 36
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=27.81 E-value=2.7e+02 Score=29.50 Aligned_cols=35 Identities=17% Similarity=0.157 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Q 046530 147 MTTLYEIKHREQILEETLKQVRIRKHLLEEICNSS 181 (310)
Q Consensus 147 ~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~~~~~~ 181 (310)
+.-.++...++.+++........+.+.+...++..
T Consensus 258 G~~~~~r~~Le~ei~~le~e~~e~~~~l~~l~~~~ 292 (650)
T TIGR03185 258 GDLFEEREQLERQLKEIEAARKANRAQLRELAADP 292 (650)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 33466677888888877777777777776666554
No 37
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=27.15 E-value=1.9e+02 Score=27.94 Aligned_cols=45 Identities=22% Similarity=0.415 Sum_probs=30.4
Q ss_pred ceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530 7 QIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN 72 (310)
Q Consensus 7 ~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~ 72 (310)
.|..|.|.+.|..+=+ | .||..+.+ +.| .|-+.|++++|+++|..
T Consensus 25 n~~li~n~tqr~t~~s-R------------~L~Ecel~---~~p-----~Y~nDpEmK~iid~~n~ 69 (295)
T TIGR01478 25 NVSYIQNNTQMTSTKS-R------------LLAEIQRP---KNP-----HYHNDPELKEIIDKLNE 69 (295)
T ss_pred ceecccCccccccccc-e------------ehhhhccc---cCC-----CCCCcHHHHHHHHHHhH
Confidence 4567888777766633 2 57777764 333 34467999999999864
No 38
>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []. These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle
Probab=25.91 E-value=1e+02 Score=22.61 Aligned_cols=25 Identities=20% Similarity=0.414 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
+..++.+++.++.+++.++..+..+
T Consensus 26 i~~l~~~i~~l~~e~~~L~~ei~~l 50 (80)
T PF04977_consen 26 IAELQKEIEELKKENEELKEEIERL 50 (80)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4445555666666666665555544
No 39
>PF08432 Vfa1: AAA-ATPase Vps4-associated protein 1; InterPro: IPR013640 This is a family of fungal proteins of unknown function.
Probab=25.13 E-value=1.4e+02 Score=26.37 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhh
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRI 139 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~ 139 (310)
.++|..||.+++++.++.+.....
T Consensus 64 ~~el~~eiekvkke~Eekq~~k~~ 87 (182)
T PF08432_consen 64 KKELEEEIEKVKKEYEEKQKWKKE 87 (182)
T ss_pred HHHHHHHHHHHHHHHHHHhHHhhh
Confidence 467888888888888877765533
No 40
>PF13082 DUF3931: Protein of unknown function (DUF3931)
Probab=24.80 E-value=29 Score=25.12 Aligned_cols=38 Identities=29% Similarity=0.453 Sum_probs=31.6
Q ss_pred cccceEEeccCCCcceeccccccchhhhhhhhh--cccCc
Q 046530 4 VKVQIKRIENTTNRQVTFSKRRNGLVKKAYELS--VLCDV 41 (310)
Q Consensus 4 ~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs--~LC~~ 41 (310)
+|-.+--|..+++..-||+--|--.-.|.+|+| +|||-
T Consensus 6 kkcnvisidgkkkksdtysypklvvenktyefssfvlcge 45 (66)
T PF13082_consen 6 KKCNVISIDGKKKKSDTYSYPKLVVENKTYEFSSFVLCGE 45 (66)
T ss_pred ccccEEEeccccccCCcccCceEEEeCceEEEEEEEEEcc
Confidence 566667788899999999999888899999998 57763
No 41
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=24.70 E-value=2.7e+02 Score=26.57 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
+++++.++..++++++.++..+..+
T Consensus 61 i~~~~~k~~~~~~~i~~~~~eik~l 85 (265)
T COG3883 61 IEEIQSKIDELQKEIDQSKAEIKKL 85 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444433
No 42
>PF02841 GBP_C: Guanylate-binding protein, C-terminal domain; InterPro: IPR003191 Guanylate-binding protein is a GTPase that is induced by interferon (IFN)-gamma. GTPases induced by IFN-gamma are key to the protective immunity against microbial and viral pathogens. These GTPases are classified into three groups: the small 47-kd GTPases, the Mx proteins, and the large 65- to 67-kd GTPases. Guanylate-binding proteins (GBP) fall into the last class. In humans, there are seven GBPs (hGBP1-7) []. Structurally, hGBP1 consists of two domains: a compact globular N-terminal domain harbouring the GTPase function (IPR015894 from INTERPRO), and an alpha-helical finger-like C-terminal domain. Human GBP1 is secreted from cells without the need of a leader peptide, and has been shown to exhibit antiviral activity against Vesicular stomatitis virus and Encephalomyocarditis virus, as well as being able to regulate the inhibition of proliferation and invasion of endothelial cells in response to IFN-gamma [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1DG3_A 2D4H_A 2B8W_B 2B92_A 2BC9_A 1F5N_A.
Probab=24.54 E-value=5e+02 Score=24.51 Aligned_cols=26 Identities=31% Similarity=0.551 Sum_probs=14.8
Q ss_pred cCCCCccccccCCchhHHHHHhhcCCch
Q 046530 48 FSPSGRVSLFSGNKSMEEILARYVNLPE 75 (310)
Q Consensus 48 fsp~gk~~~~~~~~sve~VI~RY~~lpe 75 (310)
|++.|....| ...+..++..|...|.
T Consensus 144 ~~~~gg~~~~--~~~~~~~~~~Y~~~p~ 169 (297)
T PF02841_consen 144 YSKPGGYQLF--LKELDELEKEYEQEPG 169 (297)
T ss_dssp TSSTTHHHHH--HHHHHHHHHHHHHSS-
T ss_pred CCCCCCHHHH--HHHHHHHHHHHhhcCC
Confidence 4444433333 2457888888877653
No 43
>PRK10265 chaperone-modulator protein CbpM; Provisional
Probab=24.35 E-value=1.1e+02 Score=24.38 Aligned_cols=27 Identities=22% Similarity=0.255 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhcC
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFEE 142 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~G 142 (310)
+-+|-+++..|++++..++++++.|..
T Consensus 73 vl~LLd~i~~Lr~el~~L~~~l~~~~~ 99 (101)
T PRK10265 73 ALTLLDEIAHLKQENRLLRQRLSRFVA 99 (101)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 456888999999999999999988853
No 44
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=23.71 E-value=40 Score=25.92 Aligned_cols=22 Identities=45% Similarity=0.798 Sum_probs=18.3
Q ss_pred cccccccCCC-CCccCCCccccc
Q 046530 284 GQVIDVNFSP-WTEFYPSGLHIE 305 (310)
Q Consensus 284 ~~~~~~~~~~-~~~~~~~~~~~~ 305 (310)
|+|.|+++|| |...-+-|+|-.
T Consensus 25 G~VYDvS~s~~W~dGtHqglhsa 47 (81)
T COG4892 25 GTVYDVSLSPSWGDGTHQGLHSA 47 (81)
T ss_pred CEEEeeccCcccCCCcccccccc
Confidence 8999998875 999888888843
No 45
>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma. Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].
Probab=23.53 E-value=94 Score=27.45 Aligned_cols=59 Identities=22% Similarity=0.286 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH----hhhcCC---CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 111 NTDSHLEEVQQEIVKCKSQIQNMEKRL----RIFEED---PSEMTTLYEIKHREQILEETLKQVRIRKHL 173 (310)
Q Consensus 111 ~~d~~lEeLq~Ei~kLk~qie~le~~l----R~~~Gd---~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~ 173 (310)
+.+..-++|+.|+.++..+|..|..-| |++ ++ -|..+.+. .|-+.|-++++.|+.-..+
T Consensus 26 LsEeE~eeLr~EL~KvEeEI~TLrqvL~aKer~~-~eLKrkLGit~l~---elkqnlskg~~~vq~S~aY 91 (162)
T PF04201_consen 26 LSEEEREELRSELAKVEEEIQTLRQVLAAKERHC-AELKRKLGITPLS---ELKQNLSKGWHDVQDSNAY 91 (162)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH-HHHHHHHCCchHH---HHHHHHHHHhHhhhchhHH
Confidence 555666778888888888877666544 222 22 12233344 4455777777777665544
No 46
>PRK09039 hypothetical protein; Validated
Probab=23.50 E-value=2e+02 Score=28.15 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=30.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQ 166 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~r 166 (310)
.++.-|+++|+.|+.|+..++..+...+... .-.-..+..|+..|+.+|..
T Consensus 137 ~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~--~~~~~~i~~L~~~L~~a~~~ 187 (343)
T PRK09039 137 AQVELLNQQIAALRRQLAALEAALDASEKRD--RESQAKIADLGRRLNVALAQ 187 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 3456666677777777666666665543321 11234577777777777754
No 47
>PF06008 Laminin_I: Laminin Domain I; InterPro: IPR009254 Laminins are glycoproteins that are major constituents of the basement membrane of cells. Laminins are trimeric molecules; laminin-1 is an alpha1 beta1 gamma1 trimer. It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure []. Binding to cells via a high affinity receptor, laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components.; GO: 0005102 receptor binding, 0030155 regulation of cell adhesion, 0030334 regulation of cell migration, 0045995 regulation of embryonic development, 0005606 laminin-1 complex
Probab=23.49 E-value=3.1e+02 Score=25.40 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=43.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
..+.+...+..+...|..+-.....+. .....++-.+|..+-...+.-|..||.|.
T Consensus 88 ~a~~L~~~i~~l~~~i~~l~~~~~~l~-~~~~~~~~~~l~~~l~ea~~mL~emr~r~ 143 (264)
T PF06008_consen 88 RAQDLEQFIQNLQDNIQELIEQVESLN-ENGDQLPSEDLQRALAEAQRMLEEMRKRD 143 (264)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC-cccCCCCHHHHHHHHHHHHHHHHHHHhcc
Confidence 356677777788888888777777664 46667778889888888999999998884
No 48
>TIGR02894 DNA_bind_RsfA transcription factor, RsfA family. In a subset of endospore-forming members of the Firmcutes, members of this protein family are found, several to a genome. Two very strongly conserved sequences regions are separated by a highly variable linker region. Much of the linker region was excised from the seed alignment for this model. A characterized member is the prespore-specific transcription RsfA from Bacillus subtilis, previously called YwfN, which is controlled by sigma factor F and seems to fine-tune expression of some genes in the sigma-F regulon. A paralog in Bacillus subtilis is designated YlbO.
Probab=23.30 E-value=5.2e+02 Score=22.84 Aligned_cols=24 Identities=17% Similarity=0.290 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 117 EEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 117 EeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
+.++.++.+|+++++.|++.+..+
T Consensus 107 ~~l~~e~~~l~~~~e~Le~e~~~L 130 (161)
T TIGR02894 107 ERLKNQNESLQKRNEELEKELEKL 130 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666555444
No 49
>PRK10884 SH3 domain-containing protein; Provisional
Probab=23.10 E-value=5.7e+02 Score=23.22 Aligned_cols=21 Identities=24% Similarity=0.406 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 046530 117 EEVQQEIVKCKSQIQNMEKRL 137 (310)
Q Consensus 117 EeLq~Ei~kLk~qie~le~~l 137 (310)
.++++++....+++..++.+.
T Consensus 121 ~~l~~~~~~~~~~~~~L~~~n 141 (206)
T PRK10884 121 AEMQQKVAQSDSVINGLKEEN 141 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444443333
No 50
>KOG4010 consensus Coiled-coil protein TPD52 [General function prediction only]
Probab=22.04 E-value=1.2e+02 Score=27.43 Aligned_cols=59 Identities=20% Similarity=0.274 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH----hhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRL----RIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~l----R~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
.-|+|..|+.++.++|..|..-| ||. +|.=--|.+--+..|-+.+..+++.|..--.+.
T Consensus 45 Ekeelr~EL~kvEeEI~TLrqVLaAKerH~-~ELKRKLGlt~~~EL~qnisksw~d~q~st~y~ 107 (208)
T KOG4010|consen 45 EKEELRTELAKVEEEIVTLRQVLAAKERHA-AELKRKLGLTVLKELKQNISKSWKDVQASTAYV 107 (208)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhCcchHHHHHHHHHHHHhhhhhHHHHH
Confidence 34567777777777777665544 443 232112223344555678888998887766665
No 51
>KOG4797 consensus Transcriptional regulator [Transcription]
Probab=21.84 E-value=1.4e+02 Score=24.85 Aligned_cols=24 Identities=33% Similarity=0.487 Sum_probs=17.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcC
Q 046530 119 VQQEIVKCKSQIQNMEKRLRIFEE 142 (310)
Q Consensus 119 Lq~Ei~kLk~qie~le~~lR~~~G 142 (310)
.+.|++.|+.+|.+++.+.+.++-
T Consensus 65 VREEVe~Lk~qI~eL~er~~~Le~ 88 (123)
T KOG4797|consen 65 VREEVEVLKEQIRELEERNSALER 88 (123)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466778888888888887776653
No 52
>PRK11637 AmiB activator; Provisional
Probab=21.77 E-value=4.5e+02 Score=26.19 Aligned_cols=20 Identities=15% Similarity=0.054 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 046530 152 EIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 152 EL~~LE~~LE~sL~rVR~RK 171 (310)
+|..++..|+..-..+..|.
T Consensus 111 eI~~~q~~l~~~~~~l~~rl 130 (428)
T PRK11637 111 SIAKLEQQQAAQERLLAAQL 130 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444443
No 53
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=20.83 E-value=5.5e+02 Score=29.27 Aligned_cols=29 Identities=21% Similarity=0.502 Sum_probs=16.7
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 112 TDSHLEEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 112 ~d~~lEeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
+...+++++..+..++.++...+.+++.+
T Consensus 687 ~e~~l~e~~~~~~~l~~~~~q~~~~~~~~ 715 (1074)
T KOG0250|consen 687 AEKNLEELEKKLRELSEHIEQIKRRIRKK 715 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666555555443
No 54
>PF14282 FlxA: FlxA-like protein
Probab=20.71 E-value=4.5e+02 Score=21.12 Aligned_cols=53 Identities=17% Similarity=0.308 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 120 QQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 120 q~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
...|+.|+++|..|+..+..+..+ ..++.++-...-..|..-|.-|......|
T Consensus 18 ~~~I~~L~~Qi~~Lq~ql~~l~~~--~~~~~e~k~~q~q~Lq~QI~~LqaQI~ql 70 (106)
T PF14282_consen 18 DSQIEQLQKQIKQLQEQLQELSQD--SDLDAEQKQQQIQLLQAQIQQLQAQIAQL 70 (106)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777777777666442 34466655555555555555555444444
No 55
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=20.59 E-value=2.8e+02 Score=22.25 Aligned_cols=57 Identities=26% Similarity=0.381 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHR---------------EQILEETLKQVRIRKHLLEE 176 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~L---------------E~~LE~sL~rVR~RK~~L~~ 176 (310)
..++.+++++..+..++..++..++... +.+++|..+ +.-.++++..|..|++.+..
T Consensus 10 ~~~q~~q~~~~~l~~q~~~le~~~~E~~------~v~~eL~~l~~d~~vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~ 81 (110)
T TIGR02338 10 AQLQQLQQQLQAVATQKQQVEAQLKEAE------KALEELERLPDDTPVYKSVGNLLVKTDKEEAIQELKEKKETLEL 81 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHcCCCcchhHHHhchhhheecHHHHHHHHHHHHHHHHH
No 56
>PRK11637 AmiB activator; Provisional
Probab=20.06 E-value=5.4e+02 Score=25.58 Aligned_cols=25 Identities=16% Similarity=0.185 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 151 YEIKHREQILEETLKQVRIRKHLLE 175 (310)
Q Consensus 151 ~EL~~LE~~LE~sL~rVR~RK~~L~ 175 (310)
.++..++..|...-.+|..++..|.
T Consensus 103 ~ei~~l~~eI~~~q~~l~~~~~~l~ 127 (428)
T PRK11637 103 KQIDELNASIAKLEQQQAAQERLLA 127 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677777777777777777776663
No 57
>PF14723 SSFA2_C: Sperm-specific antigen 2 C-terminus
Probab=20.00 E-value=1.3e+02 Score=26.98 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRL 137 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~l 137 (310)
+|-+..-+...+.++.+++..+
T Consensus 107 lq~mr~~ln~FR~qm~dlE~~l 128 (179)
T PF14723_consen 107 LQQMRRSLNSFREQMMDLELHL 128 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666778888777655
Done!