Query 046530
Match_columns 310
No_of_seqs 211 out of 1654
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 23:03:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046530.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046530hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p57_A Myocyte-specific enhanc 100.0 4.4E-32 1.5E-36 213.1 -0.8 85 2-88 1-85 (90)
2 1egw_A MADS box transcription 100.0 7.8E-32 2.7E-36 206.5 -1.7 73 2-75 1-73 (77)
3 1mnm_A Protein (MCM1 transcrip 100.0 2.4E-30 8.1E-35 206.6 -1.8 71 1-72 16-86 (100)
4 1hbx_A SRF, serum response fac 99.9 3.6E-30 1.2E-34 203.0 -2.5 70 1-71 10-79 (92)
5 1k6o_B SRF, serum response fac 99.9 1.1E-29 3.9E-34 203.8 -2.2 70 1-71 9-78 (103)
6 2yy0_A C-MYC-binding protein; 53.0 18 0.00062 24.9 4.2 25 113-137 18-42 (53)
7 2oa5_A Hypothetical protein BQ 52.2 50 0.0017 26.2 7.1 58 114-171 8-67 (110)
8 1ez3_A Syntaxin-1A; three heli 46.2 80 0.0027 24.4 7.7 64 115-178 13-77 (127)
9 1a93_B MAX protein, coiled coi 46.1 30 0.001 21.8 3.9 24 117-140 10-33 (34)
10 2l5g_B Putative uncharacterize 43.7 30 0.001 22.8 3.8 25 116-140 11-35 (42)
11 2dl1_A Spartin; SPG20, MIT, st 42.5 1.3E+02 0.0044 24.0 9.2 57 123-179 42-99 (116)
12 3twe_A Alpha4H; unknown functi 41.9 45 0.0015 19.4 3.9 21 118-138 5-25 (27)
13 3oa7_A Head morphogenesis prot 40.3 40 0.0014 29.5 5.2 43 114-156 44-86 (206)
14 2ke4_A CDC42-interacting prote 39.5 1.1E+02 0.0036 23.6 7.1 26 116-141 24-49 (98)
15 3i00_A HIP-I, huntingtin-inter 38.9 1.5E+02 0.005 23.7 8.8 48 111-164 12-60 (120)
16 2ky6_A Mediator of RNA polymer 35.7 18 0.0006 30.8 2.2 37 36-72 116-159 (166)
17 3uux_B Mitochondrial division 35.3 63 0.0022 29.0 5.8 52 119-176 175-226 (242)
18 1s94_A S-syntaxin; three helix 34.5 1.6E+02 0.0056 24.2 8.3 64 115-178 44-108 (180)
19 1m1j_C Fibrinogen gamma chain; 31.4 1.9E+02 0.0064 27.8 9.0 15 58-72 20-34 (409)
20 4dnd_A Syntaxin-10, SYN10; str 29.6 1.1E+02 0.0039 24.5 6.1 58 117-174 70-128 (130)
21 2yy0_A C-MYC-binding protein; 27.9 73 0.0025 21.8 3.9 26 115-140 27-52 (53)
22 2rpa_A Katanin P60 ATPase-cont 26.7 28 0.00094 25.9 1.7 32 29-72 16-47 (78)
23 2xu6_A MDV1 coiled coil; prote 24.7 94 0.0032 22.8 4.2 48 121-174 21-68 (72)
24 2aze_A Transcription factor DP 23.0 1.1E+02 0.0038 25.6 4.9 12 163-174 37-48 (155)
25 3oja_B Anopheles plasmodium-re 22.8 4.6E+02 0.016 25.2 10.3 58 115-174 503-560 (597)
26 1deq_A Fibrinogen (alpha chain 21.9 2.8E+02 0.0094 26.6 8.0 43 25-71 20-62 (390)
27 3nrf_A APAG protein; structura 21.5 12 0.00041 29.6 -1.2 50 11-68 21-70 (106)
No 1
>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A
Probab=99.96 E-value=4.4e-32 Score=213.05 Aligned_cols=85 Identities=46% Similarity=0.814 Sum_probs=75.9
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCchhhhccc
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPEHERGRL 81 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe~~r~k~ 81 (310)
||+||+|++|+|+++|+|||+|||.||||||+||||||||+||||||||+|+++.|++ +++++||+||..+++..+.+
T Consensus 1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s-~~~~~il~rY~~~~~~~~~~- 78 (90)
T 3p57_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNEPHESR- 78 (90)
T ss_dssp CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHCCSCCCEE-
T ss_pred CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC-CCHHHHHHHHHhcCcccccC-
Confidence 8999999999999999999999999999999999999999999999999999999976 78999999999887655433
Q ss_pred ccHHHHH
Q 046530 82 RNQEFLQ 88 (310)
Q Consensus 82 ~~~e~l~ 88 (310)
.|-+|++
T Consensus 79 ~~~d~~e 85 (90)
T 3p57_A 79 TNSDIVE 85 (90)
T ss_dssp CHHHHHH
T ss_pred ChHhHHH
Confidence 3444433
No 2
>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*
Probab=99.96 E-value=7.8e-32 Score=206.45 Aligned_cols=73 Identities=51% Similarity=0.875 Sum_probs=68.6
Q ss_pred CccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcCCch
Q 046530 2 GRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVNLPE 75 (310)
Q Consensus 2 gR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~lpe 75 (310)
||+||+|++|+|+++|+|||+|||+||||||+||||||||+||||||||+|+++.|++ +++++||+||...++
T Consensus 1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s-~~~~~il~ry~~~~~ 73 (77)
T 1egw_A 1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS-TDMDKVLLKYTEYNE 73 (77)
T ss_dssp CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES-SCHHHHHHHHHHC--
T ss_pred CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC-CCHHHHHHHHHhccC
Confidence 8999999999999999999999999999999999999999999999999999999975 689999999987653
No 3
>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1
Probab=99.95 E-value=2.4e-30 Score=206.59 Aligned_cols=71 Identities=46% Similarity=0.647 Sum_probs=67.9
Q ss_pred CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530 1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN 72 (310)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~ 72 (310)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|++ ++++.||+||..
T Consensus 16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s-ps~~~il~r~~G 86 (100)
T 1mnm_A 16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST-PKFEPIVTQQEG 86 (100)
T ss_dssp CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC-TTTTHHHHSHHH
T ss_pred CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC-CCHHHHHHHhhC
Confidence 89999999999999999999999999999999999999999999999999999999964 689999999854
No 4
>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*
Probab=99.95 E-value=3.6e-30 Score=202.96 Aligned_cols=70 Identities=39% Similarity=0.647 Sum_probs=67.1
Q ss_pred CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhc
Q 046530 1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYV 71 (310)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~ 71 (310)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|+ ++++..||++|.
T Consensus 10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~-s~~~~~~i~~~~ 79 (92)
T 1hbx_A 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSET 79 (92)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEE-CGGGGGGTSSHH
T ss_pred CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEec-CCCHHHHHhhhc
Confidence 9999999999999999999999999999999999999999999999999999999995 478999999774
No 5
>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1
Probab=99.94 E-value=1.1e-29 Score=203.79 Aligned_cols=70 Identities=39% Similarity=0.647 Sum_probs=66.7
Q ss_pred CCccccceEEeccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhc
Q 046530 1 MGRVKVQIKRIENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYV 71 (310)
Q Consensus 1 MgR~Ki~ik~Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~ 71 (310)
|||+||+|++|+|+.+|+|||+|||.||||||+||||||||+||||||||+|++|.|+ ++++..||+++.
T Consensus 9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~-s~~~~~vi~~~~ 78 (103)
T 1k6o_B 9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-TRKLQPMITSET 78 (103)
T ss_dssp CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEE-CGGGGGGTSSHH
T ss_pred CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeec-CccHHHHHHhhh
Confidence 9999999999999999999999999999999999999999999999999999999995 578999998653
No 6
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=53.04 E-value=18 Score=24.87 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=16.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHH
Q 046530 113 DSHLEEVQQEIVKCKSQIQNMEKRL 137 (310)
Q Consensus 113 d~~lEeLq~Ei~kLk~qie~le~~l 137 (310)
...++.|+.|...|+.+++.+..++
T Consensus 18 ~~d~eaLk~E~~eLk~k~~~L~~~~ 42 (53)
T 2yy0_A 18 NPEIELLRLELAEMKEKYEAIVEEN 42 (53)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456777777777777777666554
No 7
>2oa5_A Hypothetical protein BQLF2; MHR28B, NESG, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; HET: PE5; 2.10A {Murid herpesvirus 4} SCOP: d.362.1.1 PDB: 2h3r_A*
Probab=52.23 E-value=50 Score=26.19 Aligned_cols=58 Identities=16% Similarity=0.176 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhh--cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIF--EEDPSEMTTLYEIKHREQILEETLKQVRIRK 171 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~--~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK 171 (310)
..+|+|..|+.+|+-++..|.++++.- -+.+...+|-.+=+.+-...-.+|.+.-.+|
T Consensus 8 ~t~EeLaaeL~kLqmENK~LKkkl~~~g~~~p~d~~LTp~qKea~I~s~~~~Lss~A~~K 67 (110)
T 2oa5_A 8 KTYEEMVKEVERLKLENKTLKQKVKSSGAVSSDDSILTAAKRESIIVSSSRALGAVAMRK 67 (110)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHTC---------CCBCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 348999999999999999999988742 1234667888887777777777775555444
No 8
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=46.25 E-value=80 Score=24.37 Aligned_cols=64 Identities=16% Similarity=0.230 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTL-YEIKHREQILEETLKQVRIRKHLLEEIC 178 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl-~EL~~LE~~LE~sL~rVR~RK~~L~~~~ 178 (310)
.+++++.++..++..++.+..........+...-++ .+|..+-..+-..-+.|+.+.+.|...+
T Consensus 13 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~ 77 (127)
T 1ez3_A 13 QVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSI 77 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677778888877777776665544433322223 3566666777777777887777775443
No 9
>1a93_B MAX protein, coiled coil, LZ; leucine zipper, 2D solution structure, H-bonds, buried salt bridge, proto-oncogene, nuclear protein; NMR {Mus musculus} SCOP: h.1.3.1 PDB: 2a93_B
Probab=46.08 E-value=30 Score=21.80 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 117 EEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 117 EeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
...+++|..+++|+..|+.+.|.+
T Consensus 10 ~a~qqDIddlkrQN~~Le~Qir~l 33 (34)
T 1a93_B 10 DTHQQDIDDLKRQNALLEQQVRAL 33 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhhHhhHHHHHHHHHHHHHHHHhc
Confidence 346788999999999999888765
No 10
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=43.66 E-value=30 Score=22.79 Aligned_cols=25 Identities=24% Similarity=0.493 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
++.+..||++..++|..++++++.+
T Consensus 11 I~kVdrEI~Kte~kI~~lqkKlkeL 35 (42)
T 2l5g_B 11 MDRVDREITMVEQQISKLKKKQQQL 35 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678888888888888877655
No 11
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.48 E-value=1.3e+02 Score=24.00 Aligned_cols=57 Identities=23% Similarity=0.223 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHHHhhh-cCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 046530 123 IVKCKSQIQNMEKRLRIF-EEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEEICN 179 (310)
Q Consensus 123 i~kLk~qie~le~~lR~~-~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~~~~ 179 (310)
+.-+++=|..+++-+..- .|.+-.+-+.++...|...+...|..|+.|...|+....
T Consensus 42 l~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~~ 99 (116)
T 2dl1_A 42 KNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGLA 99 (116)
T ss_dssp HHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345667778888777543 244456677999999999999999999999999977665
No 12
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=41.86 E-value=45 Score=19.37 Aligned_cols=21 Identities=24% Similarity=0.553 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 046530 118 EVQQEIVKCKSQIQNMEKRLR 138 (310)
Q Consensus 118 eLq~Ei~kLk~qie~le~~lR 138 (310)
++..|++.+++.+..+.+.+|
T Consensus 5 elykeledlqerlrklrkklr 25 (27)
T 3twe_A 5 ELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 344445545444444444443
No 13
>3oa7_A Head morphogenesis protein, chaotic nuclear migra protein 67 fusion protein; coiled coils, structural protein, spindle POLE BODY; 2.30A {Bacillus phage PHI29}
Probab=40.32 E-value=40 Score=29.46 Aligned_cols=43 Identities=19% Similarity=0.289 Sum_probs=36.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHH
Q 046530 114 SHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHR 156 (310)
Q Consensus 114 ~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~L 156 (310)
+.+.+|+..+.+++.+++.+..++..++|++.+.+|.+-+.+.
T Consensus 44 s~~~dl~~s~~~l~ae~~~L~~~l~kLeGn~se~ITfe~~~ks 86 (206)
T 3oa7_A 44 SEYNDLTKSHNTLSKELDNLRSRFGNLEGNTSERITIKNILQS 86 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCGGGCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHccCCHHhccCHHHHhhc
Confidence 4567788999999999999999999999999888887766654
No 14
>2ke4_A CDC42-interacting protein 4; CIP4, TC10, coiled-coil, alternative splicing, cell membrane, coiled coil, cytoplasm, cytoskeleton, endocytosis; NMR {Homo sapiens}
Probab=39.48 E-value=1.1e+02 Score=23.60 Aligned_cols=26 Identities=31% Similarity=0.404 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhc
Q 046530 116 LEEVQQEIVKCKSQIQNMEKRLRIFE 141 (310)
Q Consensus 116 lEeLq~Ei~kLk~qie~le~~lR~~~ 141 (310)
+.+++.+|.+..+..+.+.+-...|.
T Consensus 24 i~el~~ei~ke~~~regl~Km~~vY~ 49 (98)
T 2ke4_A 24 LEERSRELQKEVDQREALKKMKDVYE 49 (98)
T ss_dssp HHHHHHHHHHHHHHHTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777777777666666665554
No 15
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo sapiens} PDB: 2qa7_A
Probab=38.90 E-value=1.5e+02 Score=23.66 Aligned_cols=48 Identities=25% Similarity=0.283 Sum_probs=35.1
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHH-HHHHHHHHHHHHH
Q 046530 111 NTDSHLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLY-EIKHREQILEETL 164 (310)
Q Consensus 111 ~~d~~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~-EL~~LE~~LE~sL 164 (310)
..|..++.|+.++..|+.+++.+....+.+. ..+. .+..||..|+..-
T Consensus 12 ~rD~~Ie~Lkreie~lk~ele~l~~E~q~~v------~ql~~~i~~Le~eL~e~r 60 (120)
T 3i00_A 12 EKDHLIERLYREISGLKAQLENMKTESQRVV------LQLKGHVSELEADLAEQQ 60 (120)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999988877763 1232 4666777776653
No 16
>2ky6_A Mediator of RNA polymerase II transcription subun; ARC, VP16 binding domain, acid, transcription REGU; NMR {Homo sapiens} PDB: 2l23_A 2l6u_A 2xnf_A
Probab=35.74 E-value=18 Score=30.81 Aligned_cols=37 Identities=11% Similarity=0.455 Sum_probs=27.0
Q ss_pred hcccCcceeehhcCCCCcccc-c-cCCc-----hhHHHHHhhcC
Q 046530 36 SVLCDVDVALIMFSPSGRVSL-F-SGNK-----SMEEILARYVN 72 (310)
Q Consensus 36 s~LC~~~v~livfsp~gk~~~-~-~~~~-----sve~VI~RY~~ 72 (310)
+.-|++.|-+++|||+.+.|. | |... .+++||..++.
T Consensus 116 ~~~ceiKvLiLlYs~~k~aflGfIPnDQ~~Fv~rlr~Viq~~k~ 159 (166)
T 2ky6_A 116 TAPCEVRVLMLLYSSKKKIFMGLIPYDQSGFVNGIRQVITNHKQ 159 (166)
T ss_dssp TCCCSCCEEEEEECTTTCSEEEEEESSHHHHHHHHHHHHHHHHT
T ss_pred CCCcceEEEEEEEcCCcceeeeeccCCHHHHHHHHHHHHHHHHH
Confidence 456999999999999887654 4 5442 46777777764
No 17
>3uux_B Mitochondrial division protein 1; tetratricopeptide repeat, mitochondrial fission, mitochondri cytoplasm, apoptosis; 3.90A {Saccharomyces cerevisiae S288C}
Probab=35.29 E-value=63 Score=29.03 Aligned_cols=52 Identities=25% Similarity=0.406 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 119 VQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLLEE 176 (310)
Q Consensus 119 Lq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L~~ 176 (310)
...||..+-.+|+.|+...+.... .+.-|++=|-.||.-|.-|..|.+.+.+
T Consensus 175 a~sEI~EID~KI~~L~~mR~~vl~------RLA~lEqdEl~LE~eL~~V~~Rief~qE 226 (242)
T 3uux_B 175 TLSEIRDIEVEVENLRQKKEKLLG------KIANIEQNQLLLEDNLKQIDDRLDFLEE 226 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH------HHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888888877666642 3677788889999999999999998843
No 18
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=34.53 E-value=1.6e+02 Score=24.23 Aligned_cols=64 Identities=17% Similarity=0.173 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTT-LYEIKHREQILEETLKQVRIRKHLLEEIC 178 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lS-l~EL~~LE~~LE~sL~rVR~RK~~L~~~~ 178 (310)
.+++++..|..+...++.+++......+.+...-. =.+|..+-..+...-+.|+.+.+.|....
T Consensus 44 ~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~ 108 (180)
T 1s94_A 44 QVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNI 108 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677788888888888887777665554322222 24677777777777788888888776543
No 19
>1m1j_C Fibrinogen gamma chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_C
Probab=31.43 E-value=1.9e+02 Score=27.83 Aligned_cols=15 Identities=7% Similarity=0.242 Sum_probs=11.9
Q ss_pred cCCchhHHHHHhhcC
Q 046530 58 SGNKSMEEILARYVN 72 (310)
Q Consensus 58 ~~~~sve~VI~RY~~ 72 (310)
|....+.+.|.+|..
T Consensus 20 PT~C~i~d~L~k~e~ 34 (409)
T 1m1j_C 20 PTTCGIADFFNKYRL 34 (409)
T ss_dssp ECTTHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHh
Confidence 445679999999975
No 20
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=29.61 E-value=1.1e+02 Score=24.50 Aligned_cols=58 Identities=16% Similarity=0.319 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCCC-CCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 117 EEVQQEIVKCKSQIQNMEKRLRIFEEDPSE-MTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 117 EeLq~Ei~kLk~qie~le~~lR~~~Gd~l~-~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
.+|+..+..+..++++|++..+..+.+|-. .++..||......+...-..|..=|..|
T Consensus 70 ~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~~~Ei~~Rr~fV~~~r~~I~~mk~~l 128 (130)
T 4dnd_A 70 NELRNGLRSIEWDLEDLEETIGIVEANPGKFKLPAGDLQERKVFVERMREAVQEMKDHM 128 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456777777778888888777665544422 4788899999999888888887766655
No 21
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.94 E-value=73 Score=21.77 Aligned_cols=26 Identities=12% Similarity=0.290 Sum_probs=21.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhh
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIF 140 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~ 140 (310)
..++|+.++..|+++++++..++..+
T Consensus 27 E~~eLk~k~~~L~~~~~el~~~l~~~ 52 (53)
T 2yy0_A 27 ELAEMKEKYEAIVEENKKLKAKLAQY 52 (53)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 45679999999999999999887654
No 22
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=26.75 E-value=28 Score=25.90 Aligned_cols=32 Identities=25% Similarity=0.485 Sum_probs=26.4
Q ss_pred hhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhcC
Q 046530 29 VKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYVN 72 (310)
Q Consensus 29 ~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~~ 72 (310)
.|+|+|.+.+++-+.|++.| ..+-.-|.||..
T Consensus 16 ~k~ARe~Al~GnYdta~~yY------------~g~~~qI~k~l~ 47 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYY------------QGVLDQMNKYLY 47 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHH------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHH------------HHHHHHHHHHHH
Confidence 58999999999999998887 456777888865
No 23
>2xu6_A MDV1 coiled coil; protein binding, mitochondrial outer membrane, adapter prote organelle division; 2.70A {Saccharomyces cerevisiae}
Probab=24.69 E-value=94 Score=22.76 Aligned_cols=48 Identities=23% Similarity=0.399 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 121 QEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 121 ~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
.||..+..+++.++...+.... -+..|++=|-.||..|..|..|.+.+
T Consensus 21 sEI~EID~Ki~nL~~mR~ivld------RlA~lEqdE~~LE~~l~~i~~rle~~ 68 (72)
T 2xu6_A 21 SEIRDIEVEVENLRQKKEKLLG------KIANIEQNQLMLEDNLKQIDDRLDFL 68 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHH------HHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 4556666666666655544432 26677788889999999999987665
No 24
>2aze_A Transcription factor DP-1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.1
Probab=23.01 E-value=1.1e+02 Score=25.60 Aligned_cols=12 Identities=17% Similarity=0.207 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHH
Q 046530 163 TLKQVRIRKHLL 174 (310)
Q Consensus 163 sL~rVR~RK~~L 174 (310)
+++.+..|-..+
T Consensus 37 afknLv~RN~~~ 48 (155)
T 2aze_A 37 AFKNLVQRNRHA 48 (155)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555554
No 25
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=22.82 E-value=4.6e+02 Score=25.22 Aligned_cols=58 Identities=10% Similarity=-0.008 Sum_probs=26.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046530 115 HLEEVQQEIVKCKSQIQNMEKRLRIFEEDPSEMTTLYEIKHREQILEETLKQVRIRKHLL 174 (310)
Q Consensus 115 ~lEeLq~Ei~kLk~qie~le~~lR~~~Gd~l~~lSl~EL~~LE~~LE~sL~rVR~RK~~L 174 (310)
..+.+.+++.+++++.+.++..+..+.-+ . .--.++++++++..++--++++..|+.+
T Consensus 503 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~le~~~~~~~~~~ 560 (597)
T 3oja_B 503 SSDNLNKVFTHLKERQAFKLRETQARRTE-A-DAKQKETEDLEQENIALEKQLDNKRAKQ 560 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHh-h-hhhhcchhhHHhhhHHHHHHHhhhhhHH
Confidence 34556666666666666555544433211 0 0001344444444444444444444433
No 26
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=21.87 E-value=2.8e+02 Score=26.56 Aligned_cols=43 Identities=7% Similarity=-0.033 Sum_probs=21.7
Q ss_pred ccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHHhhc
Q 046530 25 RNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILARYV 71 (310)
Q Consensus 25 r~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~RY~ 71 (310)
-.-++.++..-|--.|+..|+ .+ .=-+-+|+...+..+|++..
T Consensus 20 GpR~vE~~~s~Ck~~d~~~C~---De-DwG~kCPsGCrLqg~Ldk~e 62 (390)
T 1deq_A 20 GPRLVERQQSACKETGWPFCS---DE-DWNTKCPSGCRMKGLIDEVD 62 (390)
T ss_pred CCchhhhhccccCCCCCCCCc---hh-hccCCCCccchHHHHHHHhh
Confidence 333445555555555555555 11 11123455566777776664
No 27
>3nrf_A APAG protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, unknown function; 1.50A {Pseudomonas aeruginosa} PDB: 3sb3_A
Probab=21.53 E-value=12 Score=29.60 Aligned_cols=50 Identities=22% Similarity=0.317 Sum_probs=37.7
Q ss_pred eccCCCcceeccccccchhhhhhhhhcccCcceeehhcCCCCccccccCCchhHHHHH
Q 046530 11 IENTTNRQVTFSKRRNGLVKKAYELSVLCDVDVALIMFSPSGRVSLFSGNKSMEEILA 68 (310)
Q Consensus 11 Ien~~~R~~Tf~KRr~GL~KKa~ELs~LC~~~v~livfsp~gk~~~~~~~~sve~VI~ 68 (310)
+.++.....||.=.-.-|.+|.-+|+.+| ++.|+|.|+-+.. ..|++.|.
T Consensus 21 ~~~k~~ytktFdV~vaNl~~~~idLsk~C-----~~a~~~~gkef~l---dTVde~L~ 70 (106)
T 3nrf_A 21 VGDKHFRTQAFKVRLVNAAKSEISLKNSC-----LVAQSAAGQSFRL---DTVDEELT 70 (106)
T ss_dssp ETTEEEEEEEEEEEEECCSSSCEECTTCE-----EEEEETTSCEEEE---EEECGGGG
T ss_pred eCCeeEEEEEEEEEEecCCCCccccchhh-----heeeCcCCCEEEe---cccchhhh
Confidence 45555666777778889999999999877 9999999976665 34555554
Done!