BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046531
(196 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1GP5|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin
pdb|1GP6|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Trans-Dihydroquercetin (With 30 Min Exposure To O2)
Length = 356
Score = 66.6 bits (161), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 86/176 (48%), Gaps = 16/176 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGN--KLEE 83
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + K+ E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 84 -IVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR- 141
+++++ A+ WG ++NHGIP +++E + + +F VE K+++ T ++
Sbjct: 65 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 142 FNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRD---AVREYIKNVTKLA 194
+ S + S W D A D + +P+ D A EY K + LA
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
>pdb|2BRT|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana Complexed
With Naringenin
Length = 355
Score = 66.6 bits (161), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 84/176 (47%), Gaps = 16/176 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNK---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + E
Sbjct: 6 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 63
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR- 141
+++++ A+ WG ++NHGIP +++E + + +F VE K+++ T ++
Sbjct: 64 NCIEELKKASLDWGVMHLINHGIPADLMERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 123
Query: 142 FNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRD---AVREYIKNVTKLA 194
+ S + S W D A D + +P+ D A EY K + LA
Sbjct: 124 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 179
>pdb|1GP4|A Chain A, Anthocyanidin Synthase From Arabidopsis Thaliana
(Selenomethionine Substituted)
Length = 356
Score = 64.3 bits (155), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 49/176 (27%), Positives = 83/176 (47%), Gaps = 16/176 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEEL-------VEELTSHQTNFQVPVIDLDGVRGNK---LE 82
V+ L +GI++IP+ +IRP EEL +EE + QVP IDL + + E
Sbjct: 7 VESLAKSGIISIPKEYIRPKEELESINDVFLEE--KKEDGPQVPTIDLKNIESDDEKIRE 64
Query: 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR- 141
+++++ A+ WG ++NHGIP ++ E + + +F VE K+++ T ++
Sbjct: 65 NCIEELKKASLDWGVXHLINHGIPADLXERVKKAGEEFFSLSVEEKEKYANDQATGKIQG 124
Query: 142 FNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRD---AVREYIKNVTKLA 194
+ S + S W D A D + +P+ D A EY K + LA
Sbjct: 125 YGSKLANNASGQLEWEDYFFHLAYPEEKRDLSIWPKTPSDYIEATSEYAKCLRLLA 180
>pdb|1W9Y|A Chain A, The Structure Of Acc Oxidase
pdb|1WA6|X Chain X, The Structure Of Acc Oxidase
Length = 319
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 19/134 (14%)
Query: 69 PVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNV---LEEMIEG-IRKFNEQD 124
P+I LD V G + + ++ A E WGFF++VNHGIP V +E+ +G +K EQ
Sbjct: 5 PIISLDKVNGVERAATXEXIKDACENWGFFELVNHGIPREVXDTVEKXTKGHYKKCXEQR 64
Query: 125 VELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEV---CRD 181
KE V+ +W T + L +++ +E P++ R+
Sbjct: 65 F---KELVASKALEGVQAEVT-------DXDWESTFFLKHLPISNI--SEVPDLDEEYRE 112
Query: 182 AVREYIKNVTKLAE 195
R++ K + KLAE
Sbjct: 113 VXRDFAKRLEKLAE 126
>pdb|1PHP|A Chain A, Structure Of The Adp Complex Of The 3-Phosphoglycerate
Kinase From Bacillus Stearothermophilus At 1.65
Angstroms
Length = 394
Score = 33.1 bits (74), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 57/123 (46%), Gaps = 18/123 (14%)
Query: 70 VIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKK 129
V D GV N LE++ + + + F + + H + ++LEE +EL K
Sbjct: 198 VKDKIGVIDNLLEKVDNLIIGGGLAYTFVKALGHDVGKSLLEE----------DKIELAK 247
Query: 130 EFYTRDRTRNVRFNSNFDLHYS-RTANWRDT--LTISAL----ASTDLDPNEYPEVCRDA 182
F + + + VRF D+ + R AN +T + I A+ ++ D+ P E+ RD
Sbjct: 248 SFMEKAKEKGVRFYMPVDVVVADRFANDANTKVVPIDAIPADWSALDIGPKTR-ELYRDV 306
Query: 183 VRE 185
+RE
Sbjct: 307 IRE 309
>pdb|4FL0|A Chain A, Crystal Structure Of Ald1 From Arabidopsis Thaliana
pdb|4FL0|B Chain B, Crystal Structure Of Ald1 From Arabidopsis Thaliana
Length = 456
Score = 31.6 bits (70), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Query: 53 EELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAA-AETW 95
E + E++TSH +NF + ++G RG LE+ +R A AET+
Sbjct: 82 EPIPEQITSHMSNFAHGLSTVEGYRGYGLEQGNKTLRKAIAETF 125
>pdb|2L2N|A Chain A, Backbone 1h, 13c, And 15n Chemical Shift Assignments For
The First Dsrbd Of Protein Hyl1
Length = 103
Score = 30.8 bits (68), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 51 PPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAE 93
P E+V+E SH++ FQ VI LDGVR N L + R AAE
Sbjct: 35 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFN--RKAAE 74
>pdb|3ADG|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|A Chain A, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|B Chain B, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
pdb|3ADI|C Chain C, Structure Of Arabidopsis Hyl1 And Its Molecular
Implications For Mirna Processing
Length = 73
Score = 30.8 bits (68), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
Query: 51 PPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAE 93
P E+V+E SH++ FQ VI LDGVR N L + R AAE
Sbjct: 21 PVYEIVKEGPSHKSLFQSTVI-LDGVRYNSLPGFFN--RKAAE 60
>pdb|1IPS|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1IPS|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(Manganese Complex)
pdb|1QJE|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Ip1 -
Fe Complex)
pdb|1QJF|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Monocyclic Sulfoxide - Fe Complex)
pdb|1QIQ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acmc
Fe Complex)
pdb|1HB4|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB3|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB2|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Oxygen
Exposed Product From Anaerobic Acov Fe Complex)
pdb|1HB1|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Acov Fe Complex)
pdb|1ODM|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-vinylglycine Fe Complex)
pdb|1ODN|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Oxygen-Exposed Product From Anaerobic Ac-Vinylglycine
Fe Complex)
pdb|1OBN|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe-no Complex
pdb|1OC1|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-cysteinyl-aminobutyrate-fe Complex
pdb|1UZW|A Chain A, Isopenicillin N Synthase With
L-D-(A-Aminoadipoyl)-L-Cysteinyl-D-Isodehydrovaline
pdb|1W03|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Glycine-Fe
Complex
pdb|1W04|A Chain A, Isopenicillin N Synthase
Aminoadipoyl-Cysteinyl-Glycine-Fe-No Complex
pdb|1W05|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
Complex
pdb|1W06|A Chain A, Isopenicillin N Synthase Aminoadipoyl-Cysteinyl-Alanine-Fe
No Complex
pdb|2BU9|A Chain A, Isopenicillin N Synthase Complexed With L-Aminoadipoyl-L-
Cysteinyl-L-Hexafluorovaline
pdb|1W3V|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Anaerobic)
pdb|1W3X|A Chain A, Isopenicillin N Synthase
D-(L-A-Aminoadipoyl)-(3r)-Methyl-L- Cysteine
D-A-Hydroxyisovaleryl Ester Complex (Oxygen Exposed 5
Minutes 20 Bar)
pdb|2IVI|B Chain B, Isopenicillin N Synthase From Aspergillus Nidulans
(anaerobic Ac-methyl-cyclopropylglycine Fe Complex)
pdb|2IVJ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Anaerobic Ac-Cyclopropylglycine Fe Complex)
pdb|1BK0|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans (Acv-Fe
Complex)
pdb|1BLZ|A Chain A, Isopenicillin N Synthase From Aspergillus Nidulans
(Acv-Fe- No Complex)
pdb|2JB4|A Chain A, Isopenicillin N Synthase With A 2-Thiabicycloheptan-6-One
Product Analogue
pdb|2VAU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
Unexposed)
pdb|2VBB|A Chain A, Isopenicillin N Synthase With Substrate Analogue Acomp (
35minutes Oxygen Exposure)
pdb|2VBD|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,l,l-
Acomp (unexposed)
pdb|2VBP|A Chain A, Isopenicillin N Synthase With Substrate Analogue
L,L,L-Acab (Unexposed)
pdb|2VCM|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov
pdb|2VE1|A Chain A, Isopenicillin N Synthase With Substrate Analogue Asmcov (
Oxygen Exposed 1min 20bar)
pdb|2WO7|A Chain A, Isopenicillin N Synthase With Substrate Analogue L,L,D-
Acd2ab (Unexposed)
pdb|2Y6F|A Chain A, Isopenicillin N Synthase With
Ac-D-S-Methyl-3r-Methylcysteine
pdb|2Y60|A Chain A, Isopenicillin N Synthase With Ac-D-Methionine
pdb|2Y86|A Chain A, Isopenicillin N Synthase With Ac-O-Methyl-D-Threonine
pdb|3ZKU|A Chain A, Isopenicillin N Synthase With Substrate Analogue Ahcv
Length = 331
Score = 30.4 bits (67), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 68 VPVIDLDGVRGNKLE---EIVDQVRAAAETWGFFQVVNHGIPLNVLEE 112
VP ID+ + G+ + Q+ AA+ GFF VNHGI + L +
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
>pdb|2BJS|A Chain A, Isopenicillin N Synthase C-Terminal Truncation Mutant
Length = 325
Score = 30.4 bits (67), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 68 VPVIDLDGVRGNKLE---EIVDQVRAAAETWGFFQVVNHGIPLNVLEE 112
VP ID+ + G+ + Q+ AA+ GFF VNHGI + L +
Sbjct: 9 VPKIDVSPLFGDDQAAKMRVAQQIDAASRDTGFFYAVNHGINVQRLSQ 56
>pdb|2FJK|A Chain A, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|B Chain B, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|C Chain C, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
pdb|2FJK|D Chain D, Crystal Structure Of Fructose-1,6-Bisphosphate Aldolase In
Thermus Caldophilus
Length = 305
Score = 30.0 bits (66), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 30/54 (55%), Gaps = 3/54 (5%)
Query: 140 VRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRDAVREYIKNVTKL 193
+ N++ DL + TA R+TL + + DP +Y R+AV+E +K+ +L
Sbjct: 248 AKINTDTDLRLAFTALVRETLGKN---PKEFDPRKYLGPAREAVKEVVKSRXEL 298
>pdb|1RV8|A Chain A, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|B Chain B, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|C Chain C, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RV8|D Chain D, Class Ii Fructose-1,6-Bisphosphate Aldolase From Thermus
Aquaticus In Complex With Cobalt
pdb|1RVG|A Chain A, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|B Chain B, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|C Chain C, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
pdb|1RVG|D Chain D, Crystal Strcuture Of Class Ii Fructose-Bisphosphate
Aldolase From Thermus Aquaticus In Complex With Y
Length = 305
Score = 28.5 bits (62), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 141 RFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYPEVCRDAVREYIKNVTKL 193
+ N++ DL + TA R+ L + + DP +Y R+AV+E +K+ +L
Sbjct: 249 KINTDTDLRLAFTALIREALNKN---PKEFDPRKYLGPAREAVKEVVKSRMEL 298
>pdb|1EV4|A Chain A, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|C Chain C, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
pdb|1EV4|D Chain D, Rat Glutathione S-transferase A1-1: Mutant W21f/f220y With
Gso3 Bound
Length = 221
Score = 28.5 bits (62), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNF-QVPVIDLDGVRGNKLEEIVDQVRAA 91
++ L+ A V FI+ PE+L + F QVP++++DG++ + I++ +
Sbjct: 18 IRFLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATK 77
Query: 92 AETWG-------FFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRN 139
+ +G + + GI L++ E +++ + D + K +DRT+N
Sbjct: 78 YDLYGKDMKERALIDMYSEGI-LDLTEMIMQLV--ICPPDQKEAKTALAKDRTKN 129
>pdb|1EV9|A Chain A, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|C Chain C, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
pdb|1EV9|D Chain D, Rat Glutathione S-Transferase A1-1 Mutant W21f With Gso3
Bound
Length = 221
Score = 28.1 bits (61), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 26/115 (22%), Positives = 55/115 (47%), Gaps = 11/115 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNF-QVPVIDLDGVRGNKLEEIVDQVRAA 91
++ L+ A V FI+ PE+L + F QVP++++DG++ + I++ +
Sbjct: 18 IRFLLAAAGVEFDEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATK 77
Query: 92 AETWG-------FFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRN 139
+ +G + + GI L++ E +++ + D + K +DRT+N
Sbjct: 78 YDLYGKDMKERALIDMYSEGI-LDLTEMIMQLV--ICPPDQKEAKTALAKDRTKN 129
>pdb|1F3B|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
pdb|1F3B|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Glutathione
Conjugate Of Benzo[a]pyrene Epoxide
Length = 222
Score = 28.1 bits (61), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNF-QVPVIDLDGVRGNKLEEIVDQVRAA 91
++ L+ A V FI+ PE+L + F QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATK 77
Query: 92 AETWG-------FFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144
+ +G + + GI L+ L EMI G D K +DRT+N R+
Sbjct: 78 YDLYGKDMKERALIDMYSEGI-LD-LTEMI-GQLVLXPPDQREAKTALAKDRTKN-RYLP 133
Query: 145 NFD 147
F+
Sbjct: 134 AFE 136
>pdb|1F3A|A Chain A, Crystal Structure Of Mgsta1-1 In Complex With Gsh
pdb|1F3A|B Chain B, Crystal Structure Of Mgsta1-1 In Complex With Gsh
Length = 222
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 57/123 (46%), Gaps = 12/123 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNF-QVPVIDLDGVRGNKLEEIVDQVRAA 91
++ L+ A V FI+ PE+L + F QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLAQTRAILNYIATK 77
Query: 92 AETWG-------FFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144
+ +G + + GI L+ L EMI G D K +DRT+N R+
Sbjct: 78 YDLYGKDMKERALIDMYSEGI-LD-LTEMI-GQLVLCPPDQREAKTALAKDRTKN-RYLP 133
Query: 145 NFD 147
F+
Sbjct: 134 AFE 136
>pdb|1ML6|A Chain A, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
pdb|1ML6|B Chain B, Crystal Structure Of Mgsta2-2 In Complex With The
Glutathione Conjugate Of Benzo[a]pyrene-7(R),8(S)-Diol-
9(S),10(R)-Epoxide
Length = 221
Score = 26.9 bits (58), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 56/123 (45%), Gaps = 12/123 (9%)
Query: 33 VKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNF-QVPVIDLDGVRGNKLEEIVDQVRAA 91
++ L+ A V FI+ PE+L + F QVP++++DG++ + I++ +
Sbjct: 18 IRWLLAAAGVEFEEKFIQSPEDLEKLKKDGNLMFDQVPMVEIDGMKLVQTRAILNYIATK 77
Query: 92 AETWG-------FFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144
+ +G + GI L+ L EMI G D K +DRT+N R+
Sbjct: 78 YDLYGKDMKERALIDMYTEGI-LD-LTEMI-GQLVLXPPDQREAKTALAKDRTKN-RYLP 133
Query: 145 NFD 147
F+
Sbjct: 134 AFE 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,872,110
Number of Sequences: 62578
Number of extensions: 241242
Number of successful extensions: 734
Number of sequences better than 100.0: 23
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 721
Number of HSP's gapped (non-prelim): 23
length of query: 196
length of database: 14,973,337
effective HSP length: 94
effective length of query: 102
effective length of database: 9,091,005
effective search space: 927282510
effective search space used: 927282510
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.5 bits)