Query 046531
Match_columns 196
No_of_seqs 234 out of 1913
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 13:03:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046531.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046531hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02947 oxidoreductase 100.0 3.4E-35 7.3E-40 254.9 15.4 166 30-196 25-197 (374)
2 PLN02904 oxidoreductase 100.0 3.5E-35 7.6E-40 253.5 15.2 172 24-196 7-183 (357)
3 PLN02758 oxidoreductase, 2OG-F 100.0 2E-34 4.4E-39 249.2 14.5 165 30-196 14-186 (361)
4 PLN02216 protein SRG1 100.0 2.8E-34 6E-39 248.0 15.3 164 31-196 15-184 (357)
5 PLN02393 leucoanthocyanidin di 100.0 1.5E-33 3.2E-38 244.0 14.5 175 20-196 2-185 (362)
6 PLN02912 oxidoreductase, 2OG-F 100.0 5.5E-33 1.2E-37 239.2 15.3 165 30-196 5-172 (348)
7 PLN03178 leucoanthocyanidin di 100.0 1.2E-32 2.7E-37 238.1 15.0 165 31-196 6-183 (360)
8 PLN02639 oxidoreductase, 2OG-F 100.0 2.5E-32 5.4E-37 234.4 14.7 158 34-196 3-165 (337)
9 PLN02254 gibberellin 3-beta-di 100.0 4.5E-32 9.8E-37 234.2 12.9 149 40-196 26-180 (358)
10 PLN02515 naringenin,2-oxogluta 100.0 7.6E-32 1.6E-36 232.8 13.8 154 40-196 11-170 (358)
11 PLN02704 flavonol synthase 100.0 3.3E-31 7.2E-36 227.3 14.6 162 31-196 4-172 (335)
12 PLN02276 gibberellin 20-oxidas 100.0 3.3E-31 7.1E-36 229.3 13.5 150 42-196 18-181 (361)
13 PLN00417 oxidoreductase, 2OG-F 100.0 9.1E-31 2E-35 225.5 15.9 161 33-196 9-177 (348)
14 KOG0143 Iron/ascorbate family 100.0 9.4E-30 2E-34 216.9 13.8 131 64-196 14-150 (322)
15 PLN02750 oxidoreductase, 2OG-F 100.0 1.2E-29 2.5E-34 218.5 14.3 151 42-196 2-168 (345)
16 PTZ00273 oxidase reductase; Pr 100.0 4.3E-28 9.3E-33 206.9 12.9 132 65-196 3-152 (320)
17 COG3491 PcbC Isopenicillin N s 100.0 1.3E-27 2.8E-32 198.2 12.8 132 65-196 3-149 (322)
18 PLN02485 oxidoreductase 99.9 1.8E-27 3.9E-32 203.7 13.8 132 65-196 5-158 (329)
19 PF14226 DIOX_N: non-haem diox 99.9 1.7E-28 3.6E-33 179.9 5.7 106 68-177 1-115 (116)
20 PLN02299 1-aminocyclopropane-1 99.9 5.4E-27 1.2E-31 200.1 13.6 124 65-196 4-130 (321)
21 PLN02997 flavonol synthase 99.9 6.4E-27 1.4E-31 199.9 13.2 123 65-196 30-156 (325)
22 PLN03002 oxidoreductase, 2OG-F 99.9 7.4E-27 1.6E-31 200.1 12.9 127 65-196 12-155 (332)
23 PLN03176 flavanone-3-hydroxyla 99.9 7.4E-27 1.6E-31 172.6 11.2 111 32-146 5-117 (120)
24 PLN02403 aminocyclopropanecarb 99.9 4.6E-26 1E-30 192.8 12.7 121 67-196 2-125 (303)
25 PLN02156 gibberellin 2-beta-di 99.9 8.7E-26 1.9E-30 193.5 12.4 121 65-196 24-150 (335)
26 PLN02984 oxidoreductase, 2OG-F 99.9 4.7E-25 1E-29 189.4 12.9 124 65-196 36-173 (341)
27 PLN02365 2-oxoglutarate-depend 99.9 7.8E-25 1.7E-29 185.3 12.2 120 65-196 3-127 (300)
28 PLN03001 oxidoreductase, 2OG-F 99.1 1.1E-10 2.4E-15 97.2 6.4 83 113-196 1-91 (262)
29 PRK08333 L-fuculose phosphate 81.7 3.7 8E-05 32.1 5.2 36 67-105 120-155 (184)
30 PRK08130 putative aldolase; Va 79.0 2.6 5.7E-05 33.8 3.6 36 67-105 127-162 (213)
31 PRK05874 L-fuculose-phosphate 69.2 5.2 0.00011 32.4 3.1 36 67-105 127-162 (217)
32 PF07350 DUF1479: Protein of u 68.5 3.8 8.3E-05 36.5 2.3 57 63-123 45-101 (416)
33 PRK06357 hypothetical protein; 65.4 20 0.00043 28.9 5.8 36 67-105 130-171 (216)
34 PRK06833 L-fuculose phosphate 64.9 7.9 0.00017 31.1 3.3 36 67-105 124-159 (214)
35 PRK08660 L-fuculose phosphate 63.8 9 0.00019 29.8 3.4 35 67-105 115-149 (181)
36 PRK06755 hypothetical protein; 61.2 8.1 0.00017 31.1 2.7 36 67-105 136-171 (209)
37 PF00596 Aldolase_II: Class II 60.1 4.2 9.1E-05 31.5 0.9 37 66-105 122-159 (184)
38 PRK08087 L-fuculose phosphate 59.9 10 0.00022 30.5 3.2 36 67-105 122-157 (215)
39 TIGR02624 rhamnu_1P_ald rhamnu 59.7 18 0.00039 30.3 4.7 36 67-105 177-212 (270)
40 PRK06754 mtnB methylthioribulo 59.5 19 0.00041 28.8 4.6 34 67-105 137-172 (208)
41 PRK03634 rhamnulose-1-phosphat 57.6 10 0.00022 31.8 2.9 36 67-105 179-214 (274)
42 PRK05834 hypothetical protein; 56.8 28 0.0006 27.6 5.1 38 67-105 121-160 (194)
43 TIGR01086 fucA L-fuculose phos 56.0 14 0.0003 29.6 3.3 36 67-105 121-156 (214)
44 TIGR03328 salvage_mtnB methylt 55.0 16 0.00035 28.8 3.5 35 67-105 126-163 (193)
45 PRK06557 L-ribulose-5-phosphat 53.3 12 0.00027 30.1 2.6 37 66-105 129-167 (221)
46 cd00379 Ribosomal_L10_P0 Ribos 49.2 62 0.0013 24.1 5.8 39 81-119 3-42 (155)
47 COG1402 Uncharacterized protei 48.6 59 0.0013 27.0 5.9 42 81-122 88-132 (250)
48 PF11243 DUF3045: Protein of u 46.6 17 0.00037 24.7 2.0 21 86-106 36-56 (89)
49 PRK09220 methylthioribulose-1- 43.1 34 0.00073 27.2 3.6 35 67-105 134-171 (204)
50 PF03460 NIR_SIR_ferr: Nitrite 43.1 39 0.00084 21.5 3.3 38 82-119 23-68 (69)
51 PRK06661 hypothetical protein; 42.3 23 0.0005 28.8 2.6 37 68-105 124-160 (231)
52 PRK07490 hypothetical protein; 41.2 25 0.00055 28.8 2.7 25 81-105 145-169 (245)
53 TIGR02409 carnitine_bodg gamma 39.6 49 0.0011 28.7 4.4 54 65-123 107-160 (366)
54 PF12368 DUF3650: Protein of u 37.7 17 0.00037 19.7 0.8 17 98-114 9-25 (28)
55 PF01471 PG_binding_1: Putativ 35.3 99 0.0021 18.6 4.2 42 83-124 3-44 (57)
56 cd00398 Aldolase_II Class II A 35.1 29 0.00063 27.6 2.1 39 66-105 121-159 (209)
57 PF08823 PG_binding_2: Putativ 35.0 1.1E+02 0.0023 20.4 4.5 37 82-118 15-51 (74)
58 PRK08324 short chain dehydroge 34.9 1.1E+02 0.0023 29.0 6.2 51 67-121 155-217 (681)
59 cd05797 Ribosomal_L10 Ribosoma 34.7 1.4E+02 0.003 22.4 5.8 39 81-119 5-44 (157)
60 cd05796 Ribosomal_P0_like Ribo 33.9 1.1E+02 0.0025 23.3 5.2 39 81-119 3-42 (163)
61 PRK00099 rplJ 50S ribosomal pr 33.2 1.5E+02 0.0033 22.7 5.8 39 81-119 6-45 (172)
62 cd05795 Ribosomal_P0_L10e Ribo 33.1 1.2E+02 0.0026 23.5 5.2 39 81-119 3-42 (175)
63 PRK06770 hypothetical protein; 32.0 88 0.0019 24.7 4.2 41 84-132 79-119 (180)
64 COG4185 Uncharacterized protei 31.9 1.1E+02 0.0024 24.1 4.7 33 85-117 83-137 (187)
65 COG0289 DapB Dihydrodipicolina 30.9 1.7E+02 0.0036 24.7 5.9 40 83-122 106-145 (266)
66 PF11043 DUF2856: Protein of u 30.8 74 0.0016 21.7 3.1 24 107-130 20-43 (97)
67 PF13376 OmdA: Bacteriocin-pro 30.7 77 0.0017 20.1 3.2 31 102-132 3-36 (63)
68 PRK04019 rplP0 acidic ribosoma 29.6 1.3E+02 0.0029 25.8 5.4 39 81-119 8-47 (330)
69 COG0244 RplJ Ribosomal protein 28.3 2E+02 0.0043 22.4 5.7 40 80-119 7-47 (175)
70 PF00586 AIRS: AIR synthase re 28.0 78 0.0017 21.5 3.1 23 81-103 73-95 (96)
71 PRK15331 chaperone protein Sic 27.6 86 0.0019 24.4 3.5 43 80-123 8-50 (165)
72 PF01113 DapB_N: Dihydrodipico 24.6 1.3E+02 0.0029 21.6 3.9 43 70-118 71-114 (124)
73 KOG2631 Class II aldolase/addu 24.5 2.2E+02 0.0048 23.2 5.3 59 65-127 154-220 (238)
74 COG3384 Aromatic ring-opening 24.2 1.4E+02 0.003 25.2 4.3 39 64-104 129-170 (268)
75 PRK11460 putative hydrolase; P 23.9 2.1E+02 0.0046 22.8 5.4 40 82-121 164-209 (232)
76 PRK06208 hypothetical protein; 23.6 68 0.0015 26.9 2.5 24 82-105 177-200 (274)
77 cd04367 IlGF_insulin_like IlGF 23.1 59 0.0013 22.1 1.6 24 82-105 8-31 (79)
78 COG1010 CobJ Precorrin-3B meth 22.7 2.5E+02 0.0053 23.3 5.4 51 65-117 127-180 (249)
79 PRK06486 hypothetical protein; 22.7 69 0.0015 26.6 2.3 24 82-105 162-185 (262)
80 PRK07044 aldolase II superfami 22.6 87 0.0019 25.7 2.9 37 67-105 138-174 (252)
81 TIGR03581 EF_0839 conserved hy 22.4 2.7E+02 0.0059 22.8 5.5 39 80-119 161-200 (236)
82 KOG1602 Cis-prenyltransferase 22.2 2.4E+02 0.0053 23.7 5.3 48 83-130 67-121 (271)
83 KOG4513 Phosphoglycerate mutas 21.1 90 0.002 27.8 2.7 26 81-106 434-461 (531)
84 cd07041 STAS_RsbR_RsbS_like Su 21.0 2.8E+02 0.0061 18.9 5.7 43 70-113 45-89 (109)
85 COG0325 Predicted enzyme with 21.0 3E+02 0.0065 22.6 5.6 44 80-123 101-155 (228)
86 PF00466 Ribosomal_L10: Riboso 20.2 2.9E+02 0.0063 18.7 5.3 41 80-120 5-46 (100)
87 cd05153 HomoserineK_II Homoser 20.0 4.3E+02 0.0093 21.5 6.6 61 66-131 192-253 (296)
No 1
>PLN02947 oxidoreductase
Probab=100.00 E-value=3.4e-35 Score=254.88 Aligned_cols=166 Identities=30% Similarity=0.522 Sum_probs=132.9
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCchhhhcc----CCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELTS----HQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 30 ~~~v~~l~~~g~~~vP~~yv~p~~~~~~~~~~----~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.++|+.|+++|..+||+.|++|++++|..... .....+||||||+.+.+..+..++++|++||++||||||+||||
T Consensus 25 ~~~v~~l~~~~~~~vp~~yv~p~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 104 (374)
T PLN02947 25 QKGVKHLCDSGITKVPAKYILPASDRPGLTRDEAIAASGNLKLPVIDLAELRGSNRPHVLATLAAACREYGFFQVVNHGV 104 (374)
T ss_pred ecCHHHHHhcCCCcCCHHhcCCchhccccccccccccCCCCCCCeEECcccCCccHHHHHHHHHHHHHHCcEEEEEcCCC
Confidence 35899999999999999999999888753110 01445799999998853357789999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCCCCCCCCc---hHHHHH
Q 046531 106 PLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EVCRDA 182 (196)
Q Consensus 106 ~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~~~~~~~P---~~fr~~ 182 (196)
|.++++++++.+++||+||.|+|+++...+.....||+........+..+|+|.|.+. ..|....++.|| ++||++
T Consensus 105 p~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~gyg~~~~~~~~~~~~~~e~~~~~-~~p~~~~~~~WP~~~~~fr~~ 183 (374)
T PLN02947 105 PSEVIGGMIDVARRFFELPLEERAKYMSADMRAPVRYGTSFNQNKDAVFCWRDFLKLV-CHPLSDVLPHWPSSPADLRKV 183 (374)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhhhcccCCCCeeeccccccccccccCceeceeee-cCCcccccccCccchHHHHHH
Confidence 9999999999999999999999999864433334678655433345668999999877 566432334565 689999
Q ss_pred HHHHHHHHHHhhhC
Q 046531 183 VREYIKNVTKLAET 196 (196)
Q Consensus 183 ~~~Y~~~~~~La~r 196 (196)
+++|+++|.+|+.+
T Consensus 184 ~~~Y~~~~~~L~~~ 197 (374)
T PLN02947 184 AATYAKATKRLFLE 197 (374)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999864
No 2
>PLN02904 oxidoreductase
Probab=100.00 E-value=3.5e-35 Score=253.55 Aligned_cols=172 Identities=23% Similarity=0.426 Sum_probs=134.7
Q ss_pred hhhccccccHHHHHHCCCCCCCCcccCCCCCchhhhcc-CCCCCCcceeeCCCCCCC-cHHHHHHHHHHHHHHcCceEEe
Q 046531 24 QAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEELTS-HQTNFQVPVIDLDGVRGN-KLEEIVDQVRAAAETWGFFQVV 101 (196)
Q Consensus 24 ~~~~~~~~~v~~l~~~g~~~vP~~yv~p~~~~~~~~~~-~~~~~~IPvIDls~~~~~-~~~~~~~~l~~Ac~~~GFF~v~ 101 (196)
+-+++++.||++|+++|..+||++|++|++++|..... ......||||||+.+..+ .+..++++|++||++||||||+
T Consensus 7 ~~~~~~~~~~~~l~~~~~~~vp~~~~~~~~~~p~~~~~~~~~~~~iPvIDls~~~~~~~r~~~~~~l~~Ac~~~GFf~v~ 86 (357)
T PLN02904 7 SVLDDSFTSAMTLTNSGVPHVPDRYVLPPSQRPMLGSSIGTSTITLPVIDLSLLHDPLLRSCVIHEIEMACKGFGFFQVI 86 (357)
T ss_pred chhhccccchHHHHhcCCCCCCHHhCCCchhcccccccccccCCCCCEEECcccCCchhHHHHHHHHHHHHHHCceEEEE
Confidence 44688899999999999999999999999888743111 113357999999987543 5678999999999999999999
Q ss_pred ecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCCCCCCCCc---hH
Q 046531 102 NHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EV 178 (196)
Q Consensus 102 nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~~~~~~~P---~~ 178 (196)
||||+.++++++++++++||+||.|+|+++.........||+...........+|+|.+... ..|....++.|| ++
T Consensus 87 nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~~-~~p~~~~~n~WP~~~p~ 165 (357)
T PLN02904 87 NHGIPSSVVKDALDAATRFFDLPVDEKMLLVSDNVHEPVRYGTSLNHSTDRVHYWRDFIKHY-SHPLSKWINLWPSNPPC 165 (357)
T ss_pred eCCCCHHHHHHHHHHHHHHhcCCHHHHhhhcccCCCCcccccccccccCCCCCCceEEeeec-cCCcccccccCcccchH
Confidence 99999999999999999999999999999864332233466543332334556899987765 444322344565 68
Q ss_pred HHHHHHHHHHHHHHhhhC
Q 046531 179 CRDAVREYIKNVTKLAET 196 (196)
Q Consensus 179 fr~~~~~Y~~~~~~La~r 196 (196)
||+++++|+++|.+|+.+
T Consensus 166 fr~~~~~y~~~~~~l~~~ 183 (357)
T PLN02904 166 YKEKVGKYAEATHVLHKQ 183 (357)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999999999864
No 3
>PLN02758 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2e-34 Score=249.19 Aligned_cols=165 Identities=24% Similarity=0.430 Sum_probs=132.4
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCchhhhc-cCCCCCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELT-SHQTNFQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 30 ~~~v~~l~~~g~~~vP~~yv~p~~~~~~~~~-~~~~~~~IPvIDls~~~~-~--~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
..+|+.|+++|.++||+.|++|++++|.... ......+||||||+.+.+ + ++..++++|++||++||||||+||||
T Consensus 14 ~~~~~~l~~~~~~~vp~~~v~~~~~~p~~~~~~~~~~~~IPvIDl~~l~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGi 93 (361)
T PLN02758 14 IDDVQELRKSKPTTVPERFIRDMDERPDLASDTLHAPDDIPVIDFSRLVKGDNDELFSEILKLRLACEEWGFFQVINHGI 93 (361)
T ss_pred cccHHHHHhcCCCCCCHHHcCCchhccccccccccCCCCCCeEEchhhcCCChHHHHHHHHHHHHHHHhCeEEEEecCCC
Confidence 4568999999999999999999988874310 112345799999998864 2 45678999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCC-CCCCCCc---hHHHH
Q 046531 106 PLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTD-LDPNEYP---EVCRD 181 (196)
Q Consensus 106 ~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~-~~~~~~P---~~fr~ 181 (196)
+.++++++++++++||+||.|+|+++.. .+....||+........+..||+|.|.++ ..|.. ..++.|| ++||+
T Consensus 94 ~~~l~~~~~~~~~~FF~LP~eeK~k~~~-~~~~~~GY~~~~~~~~~~~~d~~e~~~~~-~~p~~~~~~~~WP~~~~~fr~ 171 (361)
T PLN02758 94 ELELLEEIEKVAREFFMLPLEEKQKYPM-APGTVQGYGQAFVFSEDQKLDWCNMFALG-VEPHFIRNPKLWPTKPARFSE 171 (361)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcc-cCCCccccCcccccccccccCeeEEEEee-ccCccccccccCccccHHHHH
Confidence 9999999999999999999999999864 33456799765443445667999999987 65532 2345565 57999
Q ss_pred HHHHHHHHHHHhhhC
Q 046531 182 AVREYIKNVTKLAET 196 (196)
Q Consensus 182 ~~~~Y~~~~~~La~r 196 (196)
++++|+++|.+|+.+
T Consensus 172 ~~~~y~~~~~~l~~~ 186 (361)
T PLN02758 172 TLEVYSREIRELCQR 186 (361)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999863
No 4
>PLN02216 protein SRG1
Probab=100.00 E-value=2.8e-34 Score=248.05 Aligned_cols=164 Identities=23% Similarity=0.469 Sum_probs=129.3
Q ss_pred ccHHHHHHC-CCCCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCC-cHHHHHHHHHHHHHHcCceEEeecCCCHH
Q 046531 31 AGVKGLVDA-GIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGN-KLEEIVDQVRAAAETWGFFQVVNHGIPLN 108 (196)
Q Consensus 31 ~~v~~l~~~-g~~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~-~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~ 108 (196)
..|+.|+.+ ++.+||+.||+|++++|.+...+....+||||||+.+.++ .+.+++++|++||++||||||+||||+.+
T Consensus 15 ~~~~~~~~~~~~~~~p~~~v~p~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~ 94 (357)
T PLN02216 15 PSVQEMVKEKMITTVPPRYVRSDQDKTEIAVDSGLSSEIPIIDMKRLCSSTAMDSEVEKLDFACKEWGFFQLVNHGIDSS 94 (357)
T ss_pred hhHHHHHhcCCCCCCCHhhCcCcccCCccccccCcCCCCCeEEChhccCCccHHHHHHHHHHHHHHCcEEEEECCCCCHH
Confidence 458999876 7899999999999888643101112257999999988643 45678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCC-CCCCCCC---chHHHHHHH
Q 046531 109 VLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPNEY---PEVCRDAVR 184 (196)
Q Consensus 109 li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~---P~~fr~~~~ 184 (196)
+++++++++++||+||.|+|+++.. ..+...||+........+..||+|.|.+. ..|. ...++.| |++||++++
T Consensus 95 li~~~~~~~~~FF~LP~eeK~k~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~-~~p~~~~~~~~WP~~p~~fr~~~~ 172 (357)
T PLN02216 95 FLDKVKSEIQDFFNLPMEEKKKLWQ-RPGEIEGFGQAFVVSEDQKLDWADMFFLT-MQPVRLRKPHLFPKLPLPFRDTLE 172 (357)
T ss_pred HHHHHHHHHHHHHcCCHHHHHhhhc-CCCCccccCccccccccccCCceeeeeee-ccCcccccchhcccchHHHHHHHH
Confidence 9999999999999999999999864 33446688765443445678999999887 5553 1123334 468999999
Q ss_pred HHHHHHHHhhhC
Q 046531 185 EYIKNVTKLAET 196 (196)
Q Consensus 185 ~Y~~~~~~La~r 196 (196)
+|+++|.+|+.+
T Consensus 173 ~y~~~~~~l~~~ 184 (357)
T PLN02216 173 TYSAEVKSIAKI 184 (357)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 5
>PLN02393 leucoanthocyanidin dioxygenase like protein
Probab=100.00 E-value=1.5e-33 Score=243.98 Aligned_cols=175 Identities=26% Similarity=0.524 Sum_probs=136.0
Q ss_pred HHhhhhhccccccHHHHHHCCCCCCCCcccCCCCCchhhh--ccCCCCCCcceeeCCCCCCC---cHHHHHHHHHHHHHH
Q 046531 20 AKEVQAFDDTKAGVKGLVDAGIVNIPRIFIRPPEELVEEL--TSHQTNFQVPVIDLDGVRGN---KLEEIVDQVRAAAET 94 (196)
Q Consensus 20 ~~~~~~~~~~~~~v~~l~~~g~~~vP~~yv~p~~~~~~~~--~~~~~~~~IPvIDls~~~~~---~~~~~~~~l~~Ac~~ 94 (196)
++++.......+.|+.|++++..+||+.||+|+++++... .......+||||||+.+.++ .|..++++|.+||++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~l~~~~~~~r~~~~~~l~~Ac~~ 81 (362)
T PLN02393 2 MNCLQDWPEPIVRVQSLSESGLPTIPDRYVKPPSQRPNSSNTTSAPAEINIPVIDLSSLFSDDARLRDATLRAISEACRE 81 (362)
T ss_pred CCcccCCCCccchHHHHHhcCCCcCCHHHcCCchhccccccccccCcCCCCCeEECccccCCChHHHHHHHHHHHHHHHH
Confidence 3444444445578999999889999999999998887531 11134568999999998642 478899999999999
Q ss_pred cCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCC-CCCCC
Q 046531 95 WGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPN 173 (196)
Q Consensus 95 ~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~ 173 (196)
||||||+||||+.++++++++.+++||+||.|+|+++.. ......||+...........||+|.|++. ..|. ...++
T Consensus 82 ~GFF~l~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~-~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~-~~~~~~~~~n 159 (362)
T PLN02393 82 WGFFQVVNHGVRPELMDRAREAWREFFHLPLEVKQRYAN-SPATYEGYGSRLGVEKGAILDWSDYYFLH-YLPSSLKDPN 159 (362)
T ss_pred CcEEEEEeCCCCHHHHHHHHHHHHHHHcCCHHHHHhhhc-ccCcccccccccccccccccCchhheeee-ecCccccchh
Confidence 999999999999999999999999999999999999863 33446799644333334567999999876 4442 11234
Q ss_pred CCc---hHHHHHHHHHHHHHHHhhhC
Q 046531 174 EYP---EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 174 ~~P---~~fr~~~~~Y~~~~~~La~r 196 (196)
.|| ++||+++++|+++|.+|+.+
T Consensus 160 ~wP~~~~~fr~~~~~y~~~~~~la~~ 185 (362)
T PLN02393 160 KWPSLPPSCRELIEEYGEEVVKLCGR 185 (362)
T ss_pred hCcccchHHHHHHHHHHHHHHHHHHH
Confidence 454 68999999999999999863
No 6
>PLN02912 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=5.5e-33 Score=239.22 Aligned_cols=165 Identities=25% Similarity=0.488 Sum_probs=126.6
Q ss_pred cccHHHHHHCCCCCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHH
Q 046531 30 KAGVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNV 109 (196)
Q Consensus 30 ~~~v~~l~~~g~~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~l 109 (196)
+-.||+|. +++..||+.|++|++++|..........+||||||+.+.++++.+++++|++||++||||||+||||+.++
T Consensus 5 ~~~~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFf~v~nHGI~~~l 83 (348)
T PLN02912 5 KLLVSDIA-SVVDHVPSNYVRPVSDRPNMSEVETSGDSIPLIDLRDLHGPNRADIINQFAHACSSYGFFQIKNHGVPEET 83 (348)
T ss_pred hhHHHHHh-cCCCCCCHHhcCCchhccccccccccCCCCCeEECcccCCcCHHHHHHHHHHHHHHCCEEEEEeCCCCHHH
Confidence 34688887 77999999999999887742111113457999999988543577899999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCCCCCCCCc---hHHHHHHHHH
Q 046531 110 LEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EVCRDAVREY 186 (196)
Q Consensus 110 i~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~~~~~~~P---~~fr~~~~~Y 186 (196)
++++++++++||+||.|+|++++........+|............+|+|.+.+. ..|....++.|| ++||+++++|
T Consensus 84 ~~~~~~~~~~FF~LP~eeK~k~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~~~~~~~n~wP~~~~~fr~~~~~y 162 (348)
T PLN02912 84 IKKMMNVAREFFHQSESERVKHYSADTKKTTRLSTSFNVSKEKVSNWRDFLRLH-CYPIEDFIEEWPSTPISFREVTAEY 162 (348)
T ss_pred HHHHHHHHHHHhcCCHHHHHhHhhcCCCCcccccccccccccccCCchheEEEe-ecCcccccccCcchhHHHHHHHHHH
Confidence 999999999999999999999755443333344333322234567999999876 444322244555 6899999999
Q ss_pred HHHHHHhhhC
Q 046531 187 IKNVTKLAET 196 (196)
Q Consensus 187 ~~~~~~La~r 196 (196)
+++|.+|+.+
T Consensus 163 ~~~~~~l~~~ 172 (348)
T PLN02912 163 ATSVRALVLT 172 (348)
T ss_pred HHHHHHHHHH
Confidence 9999999864
No 7
>PLN03178 leucoanthocyanidin dioxygenase; Provisional
Probab=100.00 E-value=1.2e-32 Score=238.13 Aligned_cols=165 Identities=28% Similarity=0.478 Sum_probs=129.7
Q ss_pred ccHHHHHHCCCCCCCCcccCCCCCchhhhcc-----CCCCCCcceeeCCCCCCC---cHHHHHHHHHHHHHHcCceEEee
Q 046531 31 AGVKGLVDAGIVNIPRIFIRPPEELVEELTS-----HQTNFQVPVIDLDGVRGN---KLEEIVDQVRAAAETWGFFQVVN 102 (196)
Q Consensus 31 ~~v~~l~~~g~~~vP~~yv~p~~~~~~~~~~-----~~~~~~IPvIDls~~~~~---~~~~~~~~l~~Ac~~~GFF~v~n 102 (196)
..|+.|++++..+||+.|++|+++++..... ......||||||+.+.++ .+..++++|.+||++||||||+|
T Consensus 6 ~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~n 85 (360)
T PLN03178 6 PRVEALASSGVSSIPKEYIRPPEERPSIGDVFEEEKKAAGPQVPVVDLSNIESDDEVVREACVEAVRAAAAEWGVMHLVG 85 (360)
T ss_pred hhHHHHHhcCCCCCCHHHcCCchhcccccccccccccccCCCCCEEEchhhcCCChhhHHHHHHHHHHHHHHCCEEEEEc
Confidence 3589999988999999999999887643111 123457999999988642 47889999999999999999999
Q ss_pred cCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCC-CCcccccCCCCcccccCcChhhhhccccccCC-CCCCCCCc---h
Q 046531 103 HGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDR-TRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPNEYP---E 177 (196)
Q Consensus 103 HGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~-~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~ 177 (196)
|||+.++++++++.+++||+||.|+|+++..... +...||+........+..||+|+|.+. ..|. ...++.|| +
T Consensus 86 HGI~~~l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~d~~e~~~~~-~~p~~~~~~n~wP~~~p 164 (360)
T PLN03178 86 HGIPADLLDRVRKAGEAFFRLPIEEKEKYANDQARGAAQGYGSKLAANASGQLEWEDYFFHL-TLPEDKRDPSLWPKTPP 164 (360)
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHhhccCCCCCccccccccccccccccchhHhhccc-cCCccccccccCCCCch
Confidence 9999999999999999999999999999864321 235699754433334567999998765 4453 22244565 5
Q ss_pred HHHHHHHHHHHHHHHhhhC
Q 046531 178 VCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 178 ~fr~~~~~Y~~~~~~La~r 196 (196)
+||+++++|+++|.+|+.+
T Consensus 165 ~fr~~~~~y~~~~~~l~~~ 183 (360)
T PLN03178 165 DYVPATSEYSRSLRSLATK 183 (360)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999863
No 8
>PLN02639 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=100.00 E-value=2.5e-32 Score=234.38 Aligned_cols=158 Identities=30% Similarity=0.552 Sum_probs=123.1
Q ss_pred HHHHHCCC--CCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHH
Q 046531 34 KGLVDAGI--VNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLE 111 (196)
Q Consensus 34 ~~l~~~g~--~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~ 111 (196)
+.|+++|+ .+||+.|++|++++|.. .......+||||||+.. .+.+++++|.+||++||||||+||||+.++++
T Consensus 3 ~~~~~~~~~~~~~p~~~~~~~~~~p~~-~~~~~~~~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~ 78 (337)
T PLN02639 3 TKLLSTGIRHTTLPESYVRPESERPRL-SEVSTCENVPVIDLGSP---DRAQVVQQIGDACRRYGFFQVINHGVSAELVE 78 (337)
T ss_pred hhhhhhcCCcCcCCHHhcCCchhcccc-cccccCCCCCeEECCCc---cHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHH
Confidence 35888887 89999999999887742 11123567999999975 47789999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCCCCCCCCc---hHHHHHHHHHHH
Q 046531 112 EMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EVCRDAVREYIK 188 (196)
Q Consensus 112 ~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~~~~~~~P---~~fr~~~~~Y~~ 188 (196)
++++.+++||+||.|+|+++.........+|+...........+|+|.|.+. ..|....++.|| ++||+++++|++
T Consensus 79 ~~~~~~~~fF~LP~e~K~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~-~~p~~~~~n~wP~~~~~fr~~~~~y~~ 157 (337)
T PLN02639 79 KMLAVAHEFFRLPVEEKMKLYSDDPTKTMRLSTSFNVRKEKVHNWRDYLRLH-CYPLDKYVPEWPSNPPSFKEIVSTYCR 157 (337)
T ss_pred HHHHHHHHHhcCCHHHHhhhhccCCCCccccccccccccCcccCchheEEee-ecCCcccchhCcccchHHHHHHHHHHH
Confidence 9999999999999999999764433333344333333334567999999886 555432234454 589999999999
Q ss_pred HHHHhhhC
Q 046531 189 NVTKLAET 196 (196)
Q Consensus 189 ~~~~La~r 196 (196)
+|.+|+.+
T Consensus 158 ~~~~l~~~ 165 (337)
T PLN02639 158 EVRELGFR 165 (337)
T ss_pred HHHHHHHH
Confidence 99999864
No 9
>PLN02254 gibberellin 3-beta-dioxygenase
Probab=99.98 E-value=4.5e-32 Score=234.20 Aligned_cols=149 Identities=25% Similarity=0.407 Sum_probs=115.9
Q ss_pred CCCCCCCcccCCCCCc--hhhhc-cCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHH
Q 046531 40 GIVNIPRIFIRPPEEL--VEELT-SHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEG 116 (196)
Q Consensus 40 g~~~vP~~yv~p~~~~--~~~~~-~~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~ 116 (196)
+..+||++||+|++++ |.... ......+||||||+.. .++++|++||++||||||+||||+.++++++++.
T Consensus 26 ~~~~vp~~~v~p~~~~~~~~~~~~~~~~~~~iPvIDl~~~------~~~~~l~~Ac~~~GFF~vvnHGI~~~l~~~~~~~ 99 (358)
T PLN02254 26 SLQTLPDSHVWTPKDDLLFSSAPSPSTTDESIPVIDLSDP------NALTLIGHACETWGVFQVTNHGIPLSLLDDIESQ 99 (358)
T ss_pred hhccCChhhcCChhhccCccccccccCcCCCCCeEeCCCH------HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHH
Confidence 4467999999999887 32100 0122357999999752 4789999999999999999999999999999999
Q ss_pred HHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCCCCCCCCc---hHHHHHHHHHHHHHHHh
Q 046531 117 IRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTDLDPNEYP---EVCRDAVREYIKNVTKL 193 (196)
Q Consensus 117 ~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~~~~~~~P---~~fr~~~~~Y~~~~~~L 193 (196)
+++||+||.|+|+++.. ......||+.........+.||+|+|.+. ..|....++.|| ++||+++++|+++|.+|
T Consensus 100 ~~~FF~LP~EeK~k~~~-~~~~~~Gy~~~~~~~~~~~~~w~e~~~~~-~~p~~~~~~~wP~~~~~fr~~~~~Y~~~~~~L 177 (358)
T PLN02254 100 TRRLFSLPAQRKLKAAR-SPDGVSGYGVARISSFFNKKMWSEGFTIM-GSPLEHARQLWPQDHTKFCDVMEEYQKEMKKL 177 (358)
T ss_pred HHHHHcCCHHHHHhhcc-CCCCcccccccccccccCCCCceeeEEee-cCccccchhhCCCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999853 33456799765443344567999999987 555322233454 57999999999999999
Q ss_pred hhC
Q 046531 194 AET 196 (196)
Q Consensus 194 a~r 196 (196)
+++
T Consensus 178 ~~~ 180 (358)
T PLN02254 178 AER 180 (358)
T ss_pred HHH
Confidence 864
No 10
>PLN02515 naringenin,2-oxoglutarate 3-dioxygenase
Probab=99.97 E-value=7.6e-32 Score=232.81 Aligned_cols=154 Identities=27% Similarity=0.414 Sum_probs=120.2
Q ss_pred CCCCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCC--cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHH
Q 046531 40 GIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGN--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGI 117 (196)
Q Consensus 40 g~~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~ 117 (196)
+..+||+.|++|++++|.. ........||||||+.+.++ .+.+++++|.+||++||||||+||||+.++++++++++
T Consensus 11 ~~~~~p~~~~~~~~~~~~~-~~~~~~~~iPvIDls~~~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~li~~~~~~~ 89 (358)
T PLN02515 11 GESTLQSSFVRDEDERPKV-AYNQFSDEIPVISLAGIDEVGGRRGEICRKIVEACEDWGIFQVVDHGVDANLVADMTRLA 89 (358)
T ss_pred CCCcCCHHhcCCchhccCc-cccccCCCCCEEEChhccCCchHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHH
Confidence 4689999999999888743 11123457999999988542 57789999999999999999999999999999999999
Q ss_pred HHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCC-CCCCCCCc---hHHHHHHHHHHHHHHHh
Q 046531 118 RKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPNEYP---EVCRDAVREYIKNVTKL 193 (196)
Q Consensus 118 ~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~~fr~~~~~Y~~~~~~L 193 (196)
++||+||.|+|+++.... ....||.........+..||+|.|.+. ..|. ...++.|| ++||+++++|+++|.+|
T Consensus 90 ~~FF~LP~eeK~k~~~~~-~~~~Gy~~~~~~~~~~~~d~kE~~~~~-~~~~~~~~~n~WP~~~~~fr~~~~~y~~~~~~L 167 (358)
T PLN02515 90 RDFFALPAEEKLRFDMSG-GKKGGFIVSSHLQGEAVQDWREIVTYF-SYPVRTRDYSRWPDKPEGWRAVTEEYSEKLMGL 167 (358)
T ss_pred HHHhcCCHHHHhhhCcCC-CCccCcccccccccccccCceeeeccc-cCcccccccccccccchHHHHHHHHHHHHHHHH
Confidence 999999999999975432 334688643333334568999999775 3443 12234555 57999999999999999
Q ss_pred hhC
Q 046531 194 AET 196 (196)
Q Consensus 194 a~r 196 (196)
+++
T Consensus 168 ~~~ 170 (358)
T PLN02515 168 ACK 170 (358)
T ss_pred HHH
Confidence 863
No 11
>PLN02704 flavonol synthase
Probab=99.97 E-value=3.3e-31 Score=227.26 Aligned_cols=162 Identities=25% Similarity=0.401 Sum_probs=125.4
Q ss_pred ccHHHHHHCC--CCCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHH
Q 046531 31 AGVKGLVDAG--IVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLN 108 (196)
Q Consensus 31 ~~v~~l~~~g--~~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~ 108 (196)
.+|+.+++++ ..+||+.|++|++++|.+........+||||||+.. ++.+++++|.+||++||||||+||||+.+
T Consensus 4 ~~~~~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~iPvIDls~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~ 80 (335)
T PLN02704 4 ERVQAIASSSLLKETIPEEFIRSEKEQPAITTFHGVDPQVPTIDLSDP---DEEKLTRLIAEASKEWGMFQIVNHGIPSE 80 (335)
T ss_pred hhHHHHHhCCCCcCCCCHHHcCCcccccccccccccCCCCCeEECCCc---cHHHHHHHHHHHHHHcCEEEEEcCCCCHH
Confidence 3688888875 789999999999888754111123457999999975 45678999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhhcC-CCCcccccCCCCcccccCcChhhhhccccccCC-CCCCCCCc---hHHHHHH
Q 046531 109 VLEEMIEGIRKFNEQDVELKKEFYTRD-RTRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPNEYP---EVCRDAV 183 (196)
Q Consensus 109 li~~~~~~~~~FF~LP~eeK~~~~~~~-~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~~fr~~~ 183 (196)
+++++++.+++||+||.|+|+++.... .....||+...........+|+|.+... ..|. ...++.|| ++||+++
T Consensus 81 l~~~~~~~~~~FF~LP~e~K~~~~~~~~~~~~~Gy~~~~~~~~~~~~~~~d~~~~~-~~p~~~~~~n~wP~~~p~fr~~~ 159 (335)
T PLN02704 81 VISKLQKVGKEFFELPQEEKEVYAKPPDSKSIEGYGTKLQKEPEGKKAWVDHLFHR-IWPPSAINYQFWPKNPPSYREVN 159 (335)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhccCCCcccccccccccccccCcccceeeeEee-ecCCcccchhhCccccchhHHHH
Confidence 999999999999999999999986432 1234689765443345667899987654 3332 11223454 5799999
Q ss_pred HHHHHHHHHhhhC
Q 046531 184 REYIKNVTKLAET 196 (196)
Q Consensus 184 ~~Y~~~~~~La~r 196 (196)
++|+++|.+|+.+
T Consensus 160 ~~y~~~~~~l~~~ 172 (335)
T PLN02704 160 EEYAKYLRGVADK 172 (335)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999999864
No 12
>PLN02276 gibberellin 20-oxidase
Probab=99.97 E-value=3.3e-31 Score=229.29 Aligned_cols=150 Identities=26% Similarity=0.383 Sum_probs=120.0
Q ss_pred CCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHH
Q 046531 42 VNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIR 118 (196)
Q Consensus 42 ~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~-~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 118 (196)
.+||+.|++|++++|.. .....+||||||+.+.+ + .+..++++|++||++||||||+||||+.+++++++++++
T Consensus 18 ~~vp~~~~~~~~~~p~~---~~~~~~iPvIDls~~~~~~~~~~~~~~~~l~~Ac~~~GFF~l~nHGI~~~l~~~~~~~~~ 94 (361)
T PLN02276 18 SNIPAQFIWPDEEKPSA---AVPELAVPLIDLGGFLSGDEAATAEAARLVREACLKHGFFQVVNHGVDAALIRAAHEYMD 94 (361)
T ss_pred CCCCHHhcCCccccCCC---CCcCCCCCeEEChhhcCCChHHHHHHHHHHHHHHHHCcEEEEEcCCCCHHHHHHHHHHHH
Confidence 57999999999887642 12345899999998854 2 567899999999999999999999999999999999999
Q ss_pred HHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCCC--------CCCCCCc---hHHHHHHHHHH
Q 046531 119 KFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALASTD--------LDPNEYP---EVCRDAVREYI 187 (196)
Q Consensus 119 ~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~~--------~~~~~~P---~~fr~~~~~Y~ 187 (196)
+||+||.|+|+++.. ..+...||+........+..||+|.|.++ ..+.. .+++.|| ++||+++++|+
T Consensus 95 ~FF~LP~eeK~k~~~-~~~~~~GY~~~~~~~~~~~~d~~E~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~fr~~~~~y~ 172 (361)
T PLN02276 95 AFFKLPLSEKQRAQR-KPGESCGYASSHTGRFSSKLPWKETLSFG-YHADGGSSPVVVDYFKSVLGEDFEQFGKVYQEYC 172 (361)
T ss_pred HHHcCCHHHHHhhcc-CCCCccccCccCccccCCCCCeeeeEEEe-ccCcccccccchhcccccCCcchHHHHHHHHHHH
Confidence 999999999999853 34456799875544444567999999987 43321 1234566 36899999999
Q ss_pred HHHHHhhhC
Q 046531 188 KNVTKLAET 196 (196)
Q Consensus 188 ~~~~~La~r 196 (196)
.+|.+|+.+
T Consensus 173 ~~~~~l~~~ 181 (361)
T PLN02276 173 EAMKTLSLK 181 (361)
T ss_pred HHHHHHHHH
Confidence 999999863
No 13
>PLN00417 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.97 E-value=9.1e-31 Score=225.47 Aligned_cols=161 Identities=22% Similarity=0.351 Sum_probs=123.6
Q ss_pred HHHHHHCCCCCCCCcccCCCCCchhhhc--cCCCCCCcceeeCCCCCC-C-cHHHHHHHHHHHHHHcCceEEeecCCCHH
Q 046531 33 VKGLVDAGIVNIPRIFIRPPEELVEELT--SHQTNFQVPVIDLDGVRG-N-KLEEIVDQVRAAAETWGFFQVVNHGIPLN 108 (196)
Q Consensus 33 v~~l~~~g~~~vP~~yv~p~~~~~~~~~--~~~~~~~IPvIDls~~~~-~-~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~ 108 (196)
|++|++++ ..||+.|++|++..+.... .......||||||+.+.+ + .+...+++|++||++||||||+||||+.+
T Consensus 9 ~~~~~~~~-~~~p~~~~~~~~~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~~~l~~A~~~~GFf~l~nHGI~~~ 87 (348)
T PLN00417 9 VQEVVAAG-EGLPERYLHTPTGDGEGQPLNGAVPEMDIPAIDLSLLLSSSDDGREELSKLHSALSTWGVVQVMNHGITEA 87 (348)
T ss_pred HHHHHhCC-CCCCccccCCcccccccccccccccCCCCCeEEChhhcCCCchHHHHHHHHHHHHHHCCEEEEEcCCCCHH
Confidence 89998876 6899999999977532100 112345799999998754 2 34456799999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhccccccCC-CCCCCCCc---hHHHHHHH
Q 046531 109 VLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALAST-DLDPNEYP---EVCRDAVR 184 (196)
Q Consensus 109 li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~~fr~~~~ 184 (196)
+++++++.+++||+||.|+|+++... .....||+...........||+|.+++. ..|. ...++.|| ++||++++
T Consensus 88 l~~~~~~~~~~FF~LP~eeK~~~~~~-~~~~~GY~~~~~~~~~~~~d~~e~~~~~-~~p~~~~~~n~wP~~~~~fr~~~~ 165 (348)
T PLN00417 88 FLDKIYKLTKQFFALPTEEKQKCARE-IGSIQGYGNDMILSDDQVLDWIDRLYLT-TYPEDQRQLKFWPQVPVGFRETLH 165 (348)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhcC-CCCccccccccccccCCCcCccceeecc-cCCcccccccccccccHHHHHHHH
Confidence 99999999999999999999998643 3346799764333334567999998776 4453 12234455 68999999
Q ss_pred HHHHHHHHhhhC
Q 046531 185 EYIKNVTKLAET 196 (196)
Q Consensus 185 ~Y~~~~~~La~r 196 (196)
+|+.+|.+|+.+
T Consensus 166 ~y~~~~~~l~~~ 177 (348)
T PLN00417 166 EYTMKQRLVIEK 177 (348)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 14
>KOG0143 consensus Iron/ascorbate family oxidoreductases [Secondary metabolites biosynthesis, transport and catabolism; General function prediction only]
Probab=99.97 E-value=9.4e-30 Score=216.86 Aligned_cols=131 Identities=37% Similarity=0.653 Sum_probs=108.8
Q ss_pred CCCCcceeeCCCCCCC--cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCccc
Q 046531 64 TNFQVPVIDLDGVRGN--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR 141 (196)
Q Consensus 64 ~~~~IPvIDls~~~~~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~G 141 (196)
....||||||+.+..+ .+.+++++|++||++||||||+|||||.+++++|++.+++||+||.|+|+++.... ....|
T Consensus 14 ~~~~iPvIDls~~~~~~~~~~~~~~~i~~Ace~wGfFqviNHGI~~~l~~~~~~~~~~fF~lP~eeK~k~~~~~-~~~~g 92 (322)
T KOG0143|consen 14 SELDIPVIDLSCLDSDDPGREEVVEKLREACEEWGFFQVINHGISLELLDKVKEASKEFFELPLEEKLKVASEP-GKYRG 92 (322)
T ss_pred cCCCcCeEECCCCCCcchhHHHHHHHHHHHHHHCCeeEEEcCCCCHHHHHHHHHHHHHHhcCCHHHHHhhccCC-CCccc
Confidence 3568999999987543 37889999999999999999999999999999999999999999999999986433 35689
Q ss_pred ccCCCCcccccCcChhhhhccccccCCC-CCCC---CCchHHHHHHHHHHHHHHHhhhC
Q 046531 142 FNSNFDLHYSRTANWRDTLTISALASTD-LDPN---EYPEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 142 Y~~~~~~~~~~~~d~~E~f~~~~~~p~~-~~~~---~~P~~fr~~~~~Y~~~~~~La~r 196 (196)
|++.+........+|+|++.+. ..|.. ..++ .+|+.||+++++|.+++.+|+.+
T Consensus 93 Y~~~~~~~~~~~~~w~d~~~~~-~~p~~~~~~~~wp~~p~~~re~~~eY~~~~~~L~~~ 150 (322)
T KOG0143|consen 93 YGTSFILSPLKELDWRDYLTLL-SAPESSFDPNLWPEGPPEFRETMEEYAKEVMELSEK 150 (322)
T ss_pred ccccccccccccccchhheeee-ccCccccCcccCccccHHHHHHHHHHHHHHHHHHHH
Confidence 9988765445678999999987 66641 2222 34578999999999999999863
No 15
>PLN02750 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.96 E-value=1.2e-29 Score=218.48 Aligned_cols=151 Identities=26% Similarity=0.484 Sum_probs=116.3
Q ss_pred CCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHh
Q 046531 42 VNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFN 121 (196)
Q Consensus 42 ~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF 121 (196)
.++|..|++|++++|.. .......+||||||+.+...++.+++++|.+||++||||||+||||+.++++++++.+++||
T Consensus 2 ~~~~~~~~~~~~~~~~~-~~~~~~~~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGi~~~l~~~~~~~~~~FF 80 (345)
T PLN02750 2 GEIDPAFIQAPEHRPKF-HLTNSDEEIPVIDLSVSTSHDKTEVASKIGEACKKWGFFQVINHGVPSELRQRVEKVAKEFF 80 (345)
T ss_pred CCCCHHHcCCchhccCc-cccccCCCCCeEECCCCCcccHHHHHHHHHHHHHhCCEEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 47899999999887743 11112457999999986433678899999999999999999999999999999999999999
Q ss_pred cCCHHHHhhhhhcCCCCcccccCCCCcccccCcChhhhhcccccc----CC-----C----CCCCCCc---hHHHHHHHH
Q 046531 122 EQDVELKKEFYTRDRTRNVRFNSNFDLHYSRTANWRDTLTISALA----ST-----D----LDPNEYP---EVCRDAVRE 185 (196)
Q Consensus 122 ~LP~eeK~~~~~~~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~----p~-----~----~~~~~~P---~~fr~~~~~ 185 (196)
+||.|+|+++.. +.....||.... ...+..||+|.|+++... |. . ..++.|| ++||+++++
T Consensus 81 ~LP~eeK~~~~~-~~~~~~GY~~~~--~~~~~~d~kE~~~~~~~~~~~~p~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~ 157 (345)
T PLN02750 81 DQTTEEKRKVKR-DEVNPMGYHDSE--HTKNIRDWKEVFDFLVQDPTLVPASPDPEDTELRKLTNQWPQNPSHFRELCQE 157 (345)
T ss_pred cCCHHHHHhhcc-CCCCccCcCccc--ccccCCCceeEEEEeecccccccccccccccccccccccCCCCcHHHHHHHHH
Confidence 999999999853 333456996432 123456999999886111 10 0 0145676 689999999
Q ss_pred HHHHHHHhhhC
Q 046531 186 YIKNVTKLAET 196 (196)
Q Consensus 186 Y~~~~~~La~r 196 (196)
|+++|.+|+.+
T Consensus 158 y~~~~~~l~~~ 168 (345)
T PLN02750 158 YARQVEKLAFK 168 (345)
T ss_pred HHHHHHHHHHH
Confidence 99999999863
No 16
>PTZ00273 oxidase reductase; Provisional
Probab=99.95 E-value=4.3e-28 Score=206.86 Aligned_cols=132 Identities=22% Similarity=0.367 Sum_probs=104.7
Q ss_pred CCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCccc
Q 046531 65 NFQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR 141 (196)
Q Consensus 65 ~~~IPvIDls~~~~-~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~G 141 (196)
..+||||||+.+.+ + ++..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.........|
T Consensus 3 ~~~iPvIDl~~~~~~~~~~~~~~~~~l~~A~~~~Gff~v~nhgi~~~l~~~~~~~~~~fF~lP~e~K~~~~~~~~~~~~G 82 (320)
T PTZ00273 3 RASLPVIDVSPLFGGESAEKMRVAKQIDEACRTWGFFYIVGHPIPQERIEKVLKMAKTFFSLPMEEKLKIDIRKSRLHRG 82 (320)
T ss_pred CCCCCEEecHHhcCCChHHHHHHHHHHHHHHHhCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhccCCCCCCCC
Confidence 45799999998864 2 56789999999999999999999999999999999999999999999999985443344679
Q ss_pred ccCCCCc--ccccCcChhhhhccccccCC-C---------CCCCCCc---hHHHHHHHHHHHHHHHhhhC
Q 046531 142 FNSNFDL--HYSRTANWRDTLTISALAST-D---------LDPNEYP---EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 142 Y~~~~~~--~~~~~~d~~E~f~~~~~~p~-~---------~~~~~~P---~~fr~~~~~Y~~~~~~La~r 196 (196)
|+..... ......||+|.|.++...|. . ..++.|| ++||+++++|+++|.+|+.+
T Consensus 83 Y~~~~~e~~~~~~~~d~kE~~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~p~fr~~~~~y~~~~~~l~~~ 152 (320)
T PTZ00273 83 YGAFGAEQLDPSKPYDYKETFDMGCHLPKDHPDVMAGKPLRGPNNHPTQVEGWMELMETHYRDMQALALV 152 (320)
T ss_pred CCCccccccCCCCCCCccceEEeeccCCcccchhhccccccCCCCCCCcchHHHHHHHHHHHHHHHHHHH
Confidence 9765422 22345799999988621121 1 1256676 57999999999999999863
No 17
>COG3491 PcbC Isopenicillin N synthase and related dioxygenases [General function prediction only]
Probab=99.95 E-value=1.3e-27 Score=198.24 Aligned_cols=132 Identities=23% Similarity=0.367 Sum_probs=111.0
Q ss_pred CCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCccc
Q 046531 65 NFQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVR 141 (196)
Q Consensus 65 ~~~IPvIDls~~~~-~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~G 141 (196)
...||+|||+.+.. + ++..++++|++||++||||||+||||+..+++++++++++||+||.|||.++.+.......|
T Consensus 3 ~~~lp~idls~~~~~~~~~~~~~~~~l~~A~r~~GFf~l~~~~i~~~~~~~~~~~arqFFaLp~eeK~~~~~~~~~~~rG 82 (322)
T COG3491 3 TRDLPIIDLSELAGSDPGARRRVAQELRAACREIGFFYLVNHGIDAALIDEAFALARQFFALPVEEKLKILMVLGRQHRG 82 (322)
T ss_pred CCcCceeccHHhcCCCcHHHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHhcCccccc
Confidence 34799999999865 2 78999999999999999999999999999999999999999999999999987654335679
Q ss_pred ccCCCCcccccCcChhhhhccccccC----C------CCCCCCCc--hHHHHHHHHHHHHHHHhhhC
Q 046531 142 FNSNFDLHYSRTANWRDTLTISALAS----T------DLDPNEYP--EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 142 Y~~~~~~~~~~~~d~~E~f~~~~~~p----~------~~~~~~~P--~~fr~~~~~Y~~~~~~La~r 196 (196)
|+........+..||+|.|+++...+ . ...||.|| ++||+++.+|+++|.+++.|
T Consensus 83 Y~~~~~E~t~g~~d~kE~~d~g~~~~~~~~~~~~~~~~~gpN~wP~ip~~r~~ll~~~~~~~~~~~r 149 (322)
T COG3491 83 YTPHGGELTDGEPDYKEGLDMGPDLDAELAGVRAGTPLHGPNLWPAIPGLRDALLQYYRAMTAVGLR 149 (322)
T ss_pred cccCcccccCCccchhhhcccccccccccCCCccCCCcCCCCCCccchhHHHHHHHHHHHHHHHHHH
Confidence 98776555666679999999983222 1 12367888 68999999999999999875
No 18
>PLN02485 oxidoreductase
Probab=99.95 E-value=1.8e-27 Score=203.72 Aligned_cols=132 Identities=22% Similarity=0.292 Sum_probs=103.3
Q ss_pred CCCcceeeCCCCCC---------C-cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhc
Q 046531 65 NFQVPVIDLDGVRG---------N-KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTR 134 (196)
Q Consensus 65 ~~~IPvIDls~~~~---------~-~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~ 134 (196)
...||||||+.+.. + ++.+++++|++||++||||||+||||+.++++++++++++||+||.|+|+++...
T Consensus 5 ~~~iPvIDl~~l~~~~~~~~~~~~~~~~~~~~~l~~Ac~~~GFf~l~nHGi~~~l~~~~~~~~~~FF~lP~e~K~~~~~~ 84 (329)
T PLN02485 5 FKSIPVIDISPLVAKCDDPDMAEDPDVAEVVRQLDKACRDAGFFYVKGHGISDSLIKKVREVTHEFFELPYEEKLKIKMT 84 (329)
T ss_pred CCCCCeEechhhhccCcccccccchHHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHHhhccc
Confidence 35799999998742 1 3567899999999999999999999999999999999999999999999998543
Q ss_pred CCCCcccccCCCCcccccCcChhhhhcccccc-CC--------CCCCCCCc---hHHHHHHHHHHHHHHHhhhC
Q 046531 135 DRTRNVRFNSNFDLHYSRTANWRDTLTISALA-ST--------DLDPNEYP---EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 135 ~~~~~~GY~~~~~~~~~~~~d~~E~f~~~~~~-p~--------~~~~~~~P---~~fr~~~~~Y~~~~~~La~r 196 (196)
......||.........+..||+|.|.+.... +. ...++.|| ++||+++++|+++|.+|+.+
T Consensus 85 ~~~~~rGY~~~g~~~~~~~~d~~E~~~~~~~~~~~~~~~~~~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ 158 (329)
T PLN02485 85 PAAGYRGYQRIGENVTKGKPDMHEAIDCYREFKPGKYGDLGKVMEGPNQWPENPQEFKALMEEYIKLCTDLSRK 158 (329)
T ss_pred CCCCCCCcccccccccCCCCCcchhhhhcccCCCCcccccccccCCCCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 33335699765433334567999999876111 11 01255676 58999999999999999863
No 19
>PF14226 DIOX_N: non-haem dioxygenase in morphine synthesis N-terminal; PDB: 3OOX_A 1BK0_A 1IPS_B 1QIQ_A 1OC1_A 2Y86_A 2Y60_A 1W03_A 2VE1_A 1QJF_A ....
Probab=99.95 E-value=1.7e-28 Score=179.88 Aligned_cols=106 Identities=30% Similarity=0.620 Sum_probs=84.1
Q ss_pred cceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCCC
Q 046531 68 VPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNFD 147 (196)
Q Consensus 68 IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~~ 147 (196)
||||||+. ....+..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++. .. ....||.....
T Consensus 1 iPvIDls~-~~~~~~~~~~~l~~A~~~~GFf~l~nhGi~~~l~~~~~~~~~~fF~lp~e~K~~~~-~~-~~~~Gy~~~~~ 77 (116)
T PF14226_consen 1 IPVIDLSP-DPADREEVAEQLRDACEEWGFFYLVNHGIPQELIDRVFAAAREFFALPLEEKQKYA-RS-PSYRGYSPPGS 77 (116)
T ss_dssp --EEEHGG-CHHHHHHHHHHHHHHHHHTSEEEEESSSSSHHHHHHHHHHHHHHHCSHHHHHHHHB-CC-TTCSEEEESEE
T ss_pred CCeEECCC-CCccHHHHHHHHHHHHHhCCEEEEecccccchhhHHHHHHHHHHHHhhHHHHHHhc-CC-CCCcccccCCc
Confidence 89999997 21268899999999999999999999999999999999999999999999999984 33 46789987654
Q ss_pred ccccc-CcChhhhhcccccc-CCC-------CCCCCCch
Q 046531 148 LHYSR-TANWRDTLTISALA-STD-------LDPNEYPE 177 (196)
Q Consensus 148 ~~~~~-~~d~~E~f~~~~~~-p~~-------~~~~~~P~ 177 (196)
..... ..||+|+|+++ .. |.. ..++.||.
T Consensus 78 ~~~~~~~~d~~E~~~~~-~~~~~~~p~~~~~~~~n~WP~ 115 (116)
T PF14226_consen 78 ESTDGGKPDWKESFNIG-PDLPEDDPAYPPLYGPNIWPD 115 (116)
T ss_dssp ECCTTCCCCSEEEEEEE-CC-STTCHHTGCTS-GGGS-T
T ss_pred cccCCCCCCceEEeEEE-CCCCccccccccccCCCCCCC
Confidence 44444 89999999998 43 321 34567874
No 20
>PLN02299 1-aminocyclopropane-1-carboxylate oxidase
Probab=99.95 E-value=5.4e-27 Score=200.08 Aligned_cols=124 Identities=21% Similarity=0.418 Sum_probs=99.2
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~ 144 (196)
..+||||||+.+..+++.+++++|++||++||||||+|||||.++++++++++++||+||.|+|+++.. ...||..
T Consensus 4 ~~~iPvIDls~~~~~~~~~~~~~l~~A~~~~GFF~v~nHGI~~~l~~~~~~~~~~fF~LP~e~K~~~~~----~~~gy~~ 79 (321)
T PLN02299 4 MESFPVIDMEKLNGEERAATMELIKDACENWGFFELVNHGISHELMDEVEKMTKEHYKKCMEQRFKEMV----ASKGLEG 79 (321)
T ss_pred CCCCCEEECcCCCcccHHHHHHHHHHHHHhcCEEEEECCCCCHHHHHHHHHHHHHHhCCCHHHHHhccc----CCCCccc
Confidence 456999999988544577799999999999999999999999999999999999999999999999642 2356653
Q ss_pred CCCcccccCcChhhhhccccccCCC---CCCCCCchHHHHHHHHHHHHHHHhhhC
Q 046531 145 NFDLHYSRTANWRDTLTISALASTD---LDPNEYPEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 145 ~~~~~~~~~~d~~E~f~~~~~~p~~---~~~~~~P~~fr~~~~~Y~~~~~~La~r 196 (196)
... .....||+|.|.+. ..|.. .||. +|++||+++++|+++|.+|+.+
T Consensus 80 ~~~--~~~~~d~ke~~~~~-~~~~~~~~~wP~-~~~~fr~~~~~y~~~~~~l~~~ 130 (321)
T PLN02299 80 VQT--EVEDLDWESTFFLR-HLPESNLADIPD-LDDEYRKVMKDFALELEKLAEE 130 (321)
T ss_pred ccc--cCCCcCHHHHcccc-cCCccccccCcc-ccHHHHHHHHHHHHHHHHHHHH
Confidence 221 12456999999887 54531 2332 3478999999999999999863
No 21
>PLN02997 flavonol synthase
Probab=99.94 E-value=6.4e-27 Score=199.89 Aligned_cols=123 Identities=28% Similarity=0.480 Sum_probs=99.8
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~ 144 (196)
..+||||||+.+ ++..++++|++||++||||||+||||+.++++++++++++||+||.|+|+++.. . ....||..
T Consensus 30 ~~~IPvIDls~~---~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~k~~~-~-~~~~GY~~ 104 (325)
T PLN02997 30 AVDVPVVDLSVS---DEDFLVREVVKASEEWGVFQVVNHGIPTELMRQLQMVGKQFFELPEAEKETVAK-E-EDFEGYKR 104 (325)
T ss_pred CCCCCeEECCCC---CHHHHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcc-C-CCccccCc
Confidence 457999999976 467899999999999999999999999999999999999999999999999753 2 34679975
Q ss_pred CCCcccccCcChhhhhccccccCC-CCCCCCCc---hHHHHHHHHHHHHHHHhhhC
Q 046531 145 NFDLHYSRTANWRDTLTISALAST-DLDPNEYP---EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 145 ~~~~~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~~fr~~~~~Y~~~~~~La~r 196 (196)
... .+..||+|.|... ..|. ...++.|| ++||+++++|+++|.+|+.+
T Consensus 105 ~~~---~~~~d~~e~~~~~-~~p~~~~~~n~wP~~~~~fr~~~~~y~~~~~~l~~~ 156 (325)
T PLN02997 105 NYL---GGINNWDEHLFHR-LSPPSIINYKYWPKNPPQYREVTEEYTKHMKRLTEK 156 (325)
T ss_pred ccc---cCCCCccceeEee-ecCccccccccCCCCcchHHHHHHHHHHHHHHHHHH
Confidence 432 4567999987655 4442 11234454 58999999999999999863
No 22
>PLN03002 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.94 E-value=7.4e-27 Score=200.14 Aligned_cols=127 Identities=22% Similarity=0.393 Sum_probs=99.5
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~ 144 (196)
..+||+|||+.. .+..++++|.+||++||||||+||||+.++++++++++++||+||.|+|+++. .. ....||+.
T Consensus 12 ~~~iP~IDl~~~---~~~~~~~~l~~Ac~~~GFf~l~nHGI~~~l~~~~~~~~~~FF~LP~e~K~k~~-~~-~~~~GY~~ 86 (332)
T PLN03002 12 VSSLNCIDLAND---DLNHSVASLKQACLDCGFFYVINHGINEEFMDDVFEQSKKFFALPLEEKMKVL-RN-EKHRGYTP 86 (332)
T ss_pred CCCCCEEeCCch---hHHHHHHHHHHHHHhCCEEEEeCCCCCHHHHHHHHHHHHHHHcCCHHHHHhhc-cC-CCCCCcCc
Confidence 447999999864 46678999999999999999999999999999999999999999999999984 33 34679976
Q ss_pred CCCccc----ccCcChhhhhccccccCC-C-------CCCCCCc-----hHHHHHHHHHHHHHHHhhhC
Q 046531 145 NFDLHY----SRTANWRDTLTISALAST-D-------LDPNEYP-----EVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 145 ~~~~~~----~~~~d~~E~f~~~~~~p~-~-------~~~~~~P-----~~fr~~~~~Y~~~~~~La~r 196 (196)
...... ....||+|.|+++...|. . ..++.|| ++||+++++|+++|.+|+.+
T Consensus 87 ~~~e~~~~~~~~~~d~kE~f~~~~~~p~~~~~~~~~~~~~n~wP~~~~~p~fr~~~~~y~~~~~~l~~~ 155 (332)
T PLN03002 87 VLDEKLDPKNQINGDHKEGYYIGIEVPKDDPHWDKPFYGPNPWPDADVLPGWRETMEKYHQEALRVSMA 155 (332)
T ss_pred ccccccccccCCCCcceeeeEecccCCCCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHHHH
Confidence 433221 123699999988721121 1 0144565 47999999999999999863
No 23
>PLN03176 flavanone-3-hydroxylase; Provisional
Probab=99.94 E-value=7.4e-27 Score=172.63 Aligned_cols=111 Identities=25% Similarity=0.425 Sum_probs=89.9
Q ss_pred cHHHHHHCCCCCCCCcccCCCCCchhhhccCCCCCCcceeeCCCCCCC--cHHHHHHHHHHHHHHcCceEEeecCCCHHH
Q 046531 32 GVKGLVDAGIVNIPRIFIRPPEELVEELTSHQTNFQVPVIDLDGVRGN--KLEEIVDQVRAAAETWGFFQVVNHGIPLNV 109 (196)
Q Consensus 32 ~v~~l~~~g~~~vP~~yv~p~~~~~~~~~~~~~~~~IPvIDls~~~~~--~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~l 109 (196)
.|+.|... ..+|+.|+++..++|.. .......+||||||+.+.++ .+.+++++|++||++||||||+||||+.++
T Consensus 5 ~~~~l~~~--~~~p~~~~~~~~~~p~~-~~~~~~~~iPvIDls~~~~~~~~~~~~~~~L~~A~~~~GFf~l~nhGi~~el 81 (120)
T PLN03176 5 TLTALAEE--KTLQASFVRDEDERPKV-AYNQFSNEIPVISIAGIDDGGEKRAEICNKIVEACEEWGVFQIVDHGVDAKL 81 (120)
T ss_pred HHHHHhcc--CCCCHhhcCChhhCcCc-cccccCCCCCeEECccccCCchHHHHHHHHHHHHHHHCCEEEEECCCCCHHH
Confidence 34556543 78999999999888743 11122347999999988642 467799999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCC
Q 046531 110 LEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNF 146 (196)
Q Consensus 110 i~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~ 146 (196)
++++++.+++||+||.|+|+++.. ..++..||+..+
T Consensus 82 id~~~~~~~~FF~LP~e~K~k~~~-~~~~~~gy~~~~ 117 (120)
T PLN03176 82 VSEMTTLAKEFFALPPEEKLRFDM-SGGKKGGFIVSS 117 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHhccc-CCCccCCcchhc
Confidence 999999999999999999999864 345567997654
No 24
>PLN02403 aminocyclopropanecarboxylate oxidase
Probab=99.94 E-value=4.6e-26 Score=192.85 Aligned_cols=121 Identities=29% Similarity=0.523 Sum_probs=94.1
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccCCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNSNF 146 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~~~ 146 (196)
+||||||+.+....+++++++|++||++||||||+||||+.++++++++.+++||+||.|+|. + ..... .++...
T Consensus 2 ~iPvIDls~~~~~~~~~~~~~l~~Ac~~~GFf~v~nHGI~~~l~~~~~~~~~~FF~LP~e~k~-~-~~~~~--~~~~~~- 76 (303)
T PLN02403 2 EIPVIDFDQLDGEKRSKTMSLLHQACEKWGFFQVENHGIDKKLMEKVKQLVNSHYEENLKESF-Y-ESEIA--KALDNE- 76 (303)
T ss_pred CCCeEeCccCCcccHHHHHHHHHHHHHhCceEEEECCCCCHHHHHHHHHHHHHHhcCCHHHHh-h-ccccc--Cccccc-
Confidence 599999998754357789999999999999999999999999999999999999999999986 2 22111 122111
Q ss_pred CcccccCcChhhhhccccccCCC---CCCCCCchHHHHHHHHHHHHHHHhhhC
Q 046531 147 DLHYSRTANWRDTLTISALASTD---LDPNEYPEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 147 ~~~~~~~~d~~E~f~~~~~~p~~---~~~~~~P~~fr~~~~~Y~~~~~~La~r 196 (196)
...+..||+|.|.++ ..|.. .||+ .|++||+++++|+++|.+|+.+
T Consensus 77 --~~~~~~d~kE~~~~~-~~p~~~~~~wP~-~~p~fr~~~~~y~~~~~~l~~~ 125 (303)
T PLN02403 77 --GKTSDVDWESSFFIW-HRPTSNINEIPN-LSEDLRKTMDEYIAQLIKLAEK 125 (303)
T ss_pred --CCCCCccHhhhcccc-cCCccchhhCCC-CcHHHHHHHHHHHHHHHHHHHH
Confidence 113456999999987 55531 2343 3468999999999999999863
No 25
>PLN02156 gibberellin 2-beta-dioxygenase
Probab=99.93 E-value=8.7e-26 Score=193.52 Aligned_cols=121 Identities=22% Similarity=0.404 Sum_probs=94.5
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~ 144 (196)
+..||||||+.. +..++|.+||++||||||+||||+.++++++++.+++||+||.|+|+++.. ....||+.
T Consensus 24 ~~~iPvIDls~~------~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~e~K~~~~~---~~~~Gy~~ 94 (335)
T PLN02156 24 PVLIPVIDLTDS------DAKTQIVKACEEFGFFKVINHGVRPDLLTQLEQEAIGFFALPHSLKDKAGP---PDPFGYGT 94 (335)
T ss_pred CCCCCcccCCCh------HHHHHHHHHHHHCCEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhcCC---CCCcccCc
Confidence 346999999852 246799999999999999999999999999999999999999999999742 23458864
Q ss_pred CCCcccccCcChhhhhccccccCCC---CCCCCC---chHHHHHHHHHHHHHHHhhhC
Q 046531 145 NFDLHYSRTANWRDTLTISALASTD---LDPNEY---PEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 145 ~~~~~~~~~~d~~E~f~~~~~~p~~---~~~~~~---P~~fr~~~~~Y~~~~~~La~r 196 (196)
... ......+|+|.|.+. ..|.. ..++.| |++||+++++|+++|.+|+.+
T Consensus 95 ~~~-~~~~~~~~~e~~~~~-~~~~~~~~~~~~~wp~~p~~fr~~~~~Y~~~~~~L~~~ 150 (335)
T PLN02156 95 KRI-GPNGDVGWLEYILLN-ANLCLESHKTTAVFRHTPAIFREAVEEYMKEMKRMSSK 150 (335)
T ss_pred ccc-CCCCCCCceeeEeee-cCCccccccchhcCccccHHHHHHHHHHHHHHHHHHHH
Confidence 321 123346999999887 44321 113345 468999999999999999864
No 26
>PLN02984 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.92 E-value=4.7e-25 Score=189.43 Aligned_cols=124 Identities=26% Similarity=0.430 Sum_probs=90.1
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCc--ccc
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRN--VRF 142 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~--~GY 142 (196)
..+||||||+.+ .+++|++||++||||||+|||||.++++++++.+++||+||.|+|+++........ .||
T Consensus 36 ~~~IPvIDls~~-------~~~~l~~A~~~~GFF~v~nHGI~~~li~~~~~~s~~FF~LP~eeK~k~~~~~~~~~~~~g~ 108 (341)
T PLN02984 36 DIDIPVIDMECL-------DMEKLREACKDWGIFRLENHGIPLTLMSQLKEISESLLSLPFESKRELFGVNSPLSYFWGT 108 (341)
T ss_pred cCCCCeEeCcHH-------HHHHHHHHHHhCcEEEEECCCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccCCCCccccCc
Confidence 446999999864 25899999999999999999999999999999999999999999999752221111 122
Q ss_pred cCCCCc-----c--cccCcChhhhhccccccCC---CCCCCCC--chHHHHHHHHHHHHHHHhhhC
Q 046531 143 NSNFDL-----H--YSRTANWRDTLTISALAST---DLDPNEY--PEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 143 ~~~~~~-----~--~~~~~d~~E~f~~~~~~p~---~~~~~~~--P~~fr~~~~~Y~~~~~~La~r 196 (196)
...... . .....||+|.|.+. ..+. ..+|..+ +++||+++++|+++|.+|+.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~D~kE~f~~~-~~~~~~~~~~p~~~~~~p~fr~~~~~y~~~~~~La~~ 173 (341)
T PLN02984 109 PALTPSGKALSRGPQESNVNWVEGFNIP-LSSLSLLQTLSCSDPKLESFRVLMEEYGKHLTRIAVT 173 (341)
T ss_pred ccccccccccccccccCCCCeeeEEeCc-CCchhhhhhcCCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 111100 0 11246999999987 4321 1122222 258999999999999999864
No 27
>PLN02365 2-oxoglutarate-dependent dioxygenase
Probab=99.92 E-value=7.8e-25 Score=185.30 Aligned_cols=120 Identities=23% Similarity=0.421 Sum_probs=92.2
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhhhcCCCCcccccC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFYTRDRTRNVRFNS 144 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~~~~~~~~~GY~~ 144 (196)
...||||||+.+. ..+++|++||++||||||+||||+.++++++++.+++||+||.|+|+++.. .....||..
T Consensus 3 ~~~iPvIDls~~~-----~~~~~l~~Ac~~~GfF~l~nHGi~~~l~~~~~~~~~~FF~LP~e~K~~~~~--~~~~~GY~~ 75 (300)
T PLN02365 3 EVNIPTIDLEEFP-----GQIEKLREACERWGCFRVVNHGVSLSLMAEMKKVVRSLFDLPDEVKRRNTD--VILGSGYMA 75 (300)
T ss_pred cCCCCEEEChhhH-----HHHHHHHHHHHHCCEEEEEcCCCCHHHHHHHHHHHHHHHcCCHHHHhhccC--CCCCCCCCC
Confidence 3469999999862 245899999999999999999999999999999999999999999999642 223568875
Q ss_pred CCCcccccCcChhhhhccccc-cCC--CCCCCCC--chHHHHHHHHHHHHHHHhhhC
Q 046531 145 NFDLHYSRTANWRDTLTISAL-AST--DLDPNEY--PEVCRDAVREYIKNVTKLAET 196 (196)
Q Consensus 145 ~~~~~~~~~~d~~E~f~~~~~-~p~--~~~~~~~--P~~fr~~~~~Y~~~~~~La~r 196 (196)
.. ...+|+|.|.+... .+. ..+++.| |++||+++++|+++|.+|+.+
T Consensus 76 ~~-----~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~fr~~~~~y~~~~~~l~~~ 127 (300)
T PLN02365 76 PS-----EVNPLYEALGLYDMASPQAVDTFCSQLDASPHQRETIKKYAKAIHDLAMD 127 (300)
T ss_pred cC-----CCCCchhheecccccCchhhhhccccCCCCchHHHHHHHHHHHHHHHHHH
Confidence 42 22478998876511 111 1122222 358999999999999999864
No 28
>PLN03001 oxidoreductase, 2OG-Fe(II) oxygenase family protein
Probab=99.12 E-value=1.1e-10 Score=97.15 Aligned_cols=83 Identities=20% Similarity=0.261 Sum_probs=58.9
Q ss_pred HHHHHHHHhc-CCHHHHhhhhhcCC-CCcccccCCCCc--ccccCcChhhhhccccccCC-CCCCCCCc---hHHHHHHH
Q 046531 113 MIEGIRKFNE-QDVELKKEFYTRDR-TRNVRFNSNFDL--HYSRTANWRDTLTISALAST-DLDPNEYP---EVCRDAVR 184 (196)
Q Consensus 113 ~~~~~~~FF~-LP~eeK~~~~~~~~-~~~~GY~~~~~~--~~~~~~d~~E~f~~~~~~p~-~~~~~~~P---~~fr~~~~ 184 (196)
|++.+++||+ ||.|+|+++..... ....||+..... ...+..||+|+|.+. ..|. ...++.|| ++||++++
T Consensus 1 ~~~~~~~FF~~LP~eeK~~~~~~~~~~~~~GY~~~~~~~~~~~~~~d~kE~~~~~-~~p~~~~~~n~wP~~~~~f~~~~~ 79 (262)
T PLN03001 1 MRSLGLSFFKDSPMEEKLRYACDPGSAASEGYGSRMLLGAKDDTVLDWRDFFDHH-TFPLSRRNPSHWPDFPPDYREVVG 79 (262)
T ss_pred ChHHHHHHHhhCCHHHHHHhhcCCCCCCccccccccccccCCCCccCchheeEee-ecCccccchhhCCCCcHHHHHHHH
Confidence 4678999997 99999999864321 134699654322 123456999999986 5553 22244554 68999999
Q ss_pred HHHHHHHHhhhC
Q 046531 185 EYIKNVTKLAET 196 (196)
Q Consensus 185 ~Y~~~~~~La~r 196 (196)
+|+++|.+|+.+
T Consensus 80 ~y~~~~~~l~~~ 91 (262)
T PLN03001 80 EYGDCMKALAQK 91 (262)
T ss_pred HHHHHHHHHHHH
Confidence 999999999864
No 29
>PRK08333 L-fuculose phosphate aldolase; Provisional
Probab=81.74 E-value=3.7 Score=32.14 Aligned_cols=36 Identities=22% Similarity=0.433 Sum_probs=29.4
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||+++.... ...++++++.++..+...+.|.|||+
T Consensus 120 ~v~v~~~~~~---g~~~la~~~~~~l~~~~~vll~nHGv 155 (184)
T PRK08333 120 KIPILPFRPA---GSVELAEQVAEAMKEYDAVIMERHGI 155 (184)
T ss_pred CEeeecCCCC---CcHHHHHHHHHHhccCCEEEEcCCCC
Confidence 6999987654 23578889999998888999999997
No 30
>PRK08130 putative aldolase; Validated
Probab=78.98 E-value=2.6 Score=33.81 Aligned_cols=36 Identities=22% Similarity=0.283 Sum_probs=29.9
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||+++.... .-.++++++.+++.+...+.+.|||+
T Consensus 127 ~i~v~~y~~~---g~~~la~~~~~~l~~~~~vll~nHGv 162 (213)
T PRK08130 127 HVPLIPYYRP---GDPAIAEALAGLAARYRAVLLANHGP 162 (213)
T ss_pred ccceECCCCC---ChHHHHHHHHHHhccCCEEEEcCCCC
Confidence 5899887654 34578899999999999999999996
No 31
>PRK05874 L-fuculose-phosphate aldolase; Validated
Probab=69.25 E-value=5.2 Score=32.35 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=29.2
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++++... ...++++.+.++..+...+.|.|||+
T Consensus 127 ~v~~~~y~~~---gs~ela~~v~~~l~~~~~vlL~nHGv 162 (217)
T PRK05874 127 DVRCTEYAAS---GTPEVGRNAVRALEGRAAALIANHGL 162 (217)
T ss_pred ceeeecCCCC---CcHHHHHHHHHHhCcCCEEEEcCCCC
Confidence 4788777543 23688899999999999999999997
No 32
>PF07350 DUF1479: Protein of unknown function (DUF1479); InterPro: IPR010856 This family consists of several hypothetical Enterobacterial proteins, of around 420 residues in length. Members of this family are often known as YbiU. The function of this family is unknown.; PDB: 2CSG_A 2DBI_A 2DBN_A.
Probab=68.53 E-value=3.8 Score=36.47 Aligned_cols=57 Identities=11% Similarity=0.223 Sum_probs=39.0
Q ss_pred CCCCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcC
Q 046531 63 QTNFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQ 123 (196)
Q Consensus 63 ~~~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 123 (196)
..+..||.||++.+.+ ..+.++..+..++.|++.|.|+ ||.+......+..++|.+.
T Consensus 45 ~G~~~IP~i~f~di~~---~~~~~~~~~~ir~rG~~VIR~V-vp~~ea~~w~~e~~~Y~~~ 101 (416)
T PF07350_consen 45 KGSSIIPEIDFADIEN---GGVSEEFLAEIRRRGCVVIRGV-VPREEALAWKQELKEYLKA 101 (416)
T ss_dssp CT--SS-EEEHHHHHC---T---HHHHHHHHHHSEEEECTS-S-HHHHHHHHHHHHHHHHH
T ss_pred hCCCCCceeeHHHHhC---CCCCHHHHHHHHhcCEEEEeCC-CCHHHHHHHHHHHHHHHHh
Confidence 4556799999988743 2356788888999999877665 8888888888888887643
No 33
>PRK06357 hypothetical protein; Provisional
Probab=65.38 E-value=20 Score=28.93 Aligned_cols=36 Identities=22% Similarity=0.391 Sum_probs=26.4
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHc------CceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETW------GFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~------GFF~v~nHGI 105 (196)
.||++.+... ...++++.+.++.++- ..+.+.|||+
T Consensus 130 ~i~~~p~~~~---gs~ela~~v~~~l~~~~~~~~~~~vLl~nHGv 171 (216)
T PRK06357 130 KIPTLPFAPA---TSPELAEIVRKHLIELGDKAVPSAFLLNSHGI 171 (216)
T ss_pred CcceecccCC---CcHHHHHHHHHHHhhcCcccCCCEEEECCCCC
Confidence 4677766543 2367888888888775 4889999997
No 34
>PRK06833 L-fuculose phosphate aldolase; Provisional
Probab=64.89 E-value=7.9 Score=31.08 Aligned_cols=36 Identities=19% Similarity=0.274 Sum_probs=27.7
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++++... .-.++++.+.++..+...+.+.|||+
T Consensus 124 ~i~~~~y~~~---gs~~la~~v~~~l~~~~~vll~nHGv 159 (214)
T PRK06833 124 NVRCAEYATF---GTKELAENAFEAMEDRRAVLLANHGL 159 (214)
T ss_pred CeeeccCCCC---ChHHHHHHHHHHhCcCCEEEECCCCC
Confidence 4777666433 34567888888888889999999997
No 35
>PRK08660 L-fuculose phosphate aldolase; Provisional
Probab=63.78 E-value=9 Score=29.84 Aligned_cols=35 Identities=23% Similarity=0.295 Sum_probs=27.3
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++ .... .-.++++.+.+++.+.-.+.|.|||+
T Consensus 115 ~ipv~-~~~~---~~~~la~~v~~~l~~~~~vll~nHG~ 149 (181)
T PRK08660 115 TIPVV-GGDI---GSGELAENVARALSEHKGVVVRGHGT 149 (181)
T ss_pred CEeEE-eCCC---CCHHHHHHHHHHHhhCCEEEEcCCCc
Confidence 58988 3332 23577889999999989999999996
No 36
>PRK06755 hypothetical protein; Validated
Probab=61.18 E-value=8.1 Score=31.14 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=27.6
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||||+.... ...++++.+.++.++...+.|.|||+
T Consensus 136 ~IPiv~~~~~---~~~~la~~~~~~~~~~~avLl~~HGv 171 (209)
T PRK06755 136 TIPIVEDEKK---FADLLENNVPNFIEGGGVVLVHNYGM 171 (209)
T ss_pred EEEEEeCCCc---hhHHHHHHHHhhccCCCEEEEcCCCe
Confidence 5999987543 23567777777888888899999997
No 37
>PF00596 Aldolase_II: Class II Aldolase and Adducin N-terminal domain; InterPro: IPR001303 This entry represents the alpha/beta/alpha domain found in class II aldolases and adducin, usually at the N terminus. These proteins form part of a family that includes: rhamnulose-1-phosphate aldolase (4.1.2.19 from EC), L-fuculose phosphate aldolase (4.1.2.17 from EC) [, ] that is involved in the third step in fucose metabolism, L-ribulose- 5-phosphate 4-epimerase (5.1.3.4 from EC) involved in the third step of L-arabinose catabolism, a probable sugar isomerase SgbE, hypothetical proteins and the metazoan adducins which have not been ascribed any enzymatic function but which play a role in cell membrane cytoskeleton organisation. Adducins are members of the Ig superfamily and encode cell surface sialoglycoproteins expressed by cytokine-activated endothelium. This type I membrane protein mediates leukocyte-endothelial cell adhesion and signal transduction, and may play a role in the development of artherosclerosis and rheumatoid arthritis. Adducin is a cell-membrane skeletal protein that was first purified from human erythrocytes and subsequently isolated from bovine brain membranes. Isoforms of this protein have been detected in lung, kidney, testes and liver. Erythrocyte adducin is a 200kDa heterodimer protein, composed of alpha and beta subunits, present at about 30,000 copies per cell. It binds with high affinity to Ca(2+)/calmodulin and is a substrate for protein kinases A and C. Both alpha-adducin and beta-adducin show alternative splicing. Thus, there may be several different heterodimeric or homodimeric forms of adducin, each with a different functional specificity. It is thought to play a role in assembly of the spectrin-actin lattice that underlies the plasma membrane []. Missense mutations in both the alpha- and beta-adducin genes that alter amino acids that are normally phosphorylated have been associated with the regulation of blood pressure in the Milan hypertensive strain (MHS) of rats. Gamma adducin was isolated from human foetal brain []. It shows a high degree of similarity to the alpha and beta adducins.; GO: 0046872 metal ion binding; PDB: 2V9N_B 1GT7_B 2V9O_E 2V9M_B 2V9F_A 2UYV_A 1OJR_A 2V9G_C 2V29_B 2V9I_A ....
Probab=60.14 E-value=4.2 Score=31.52 Aligned_cols=37 Identities=24% Similarity=0.315 Sum_probs=29.0
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHH-HcCceEEeecCC
Q 046531 66 FQVPVIDLDGVRGNKLEEIVDQVRAAAE-TWGFFQVVNHGI 105 (196)
Q Consensus 66 ~~IPvIDls~~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI 105 (196)
..||+|+..... -.++++.|.+++. +...+.+.|||+
T Consensus 122 ~~v~~~~~~~~~---~~~l~~~i~~~l~~~~~~vll~nHG~ 159 (184)
T PF00596_consen 122 GEVPVVPYAPPG---SEELAEAIAEALGEDRKAVLLRNHGV 159 (184)
T ss_dssp SCEEEE-THSTT---CHHHHHHHHHHHTCTSSEEEETTTEE
T ss_pred ccceeecccccc---chhhhhhhhhhhcCCceEEeecCCce
Confidence 579999986642 2456788999999 889999999996
No 38
>PRK08087 L-fuculose phosphate aldolase; Provisional
Probab=59.95 E-value=10 Score=30.45 Aligned_cols=36 Identities=17% Similarity=0.262 Sum_probs=27.9
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++.+.... -.++++++.++..+...+.+.|||+
T Consensus 122 ~v~~~~y~~~g---s~~la~~~~~~l~~~~~vLl~nHGv 157 (215)
T PRK08087 122 SIPCAPYATFG---TRELSEHVALALKNRKATLLQHHGL 157 (215)
T ss_pred CceeecCCCCC---CHHHHHHHHHHhCcCCEEEecCCCC
Confidence 58888765542 3567888888888888899999997
No 39
>TIGR02624 rhamnu_1P_ald rhamnulose-1-phosphate aldolase. Members of this family are the enzyme RhaD, rhamnulose-1-phosphate aldolase.
Probab=59.71 E-value=18 Score=30.33 Aligned_cols=36 Identities=19% Similarity=0.143 Sum_probs=28.6
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++.+... .-.++++.+.++.++..-+.+.|||+
T Consensus 177 ~i~vvp~~~p---Gs~eLA~~v~~~l~~~~avLL~nHGv 212 (270)
T TIGR02624 177 GVGIIPWMVP---GTNEIGEATAEKMKEHRLVLWPHHGI 212 (270)
T ss_pred ccccccCcCC---CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4788776544 23578889999999888999999997
No 40
>PRK06754 mtnB methylthioribulose-1-phosphate dehydratase; Reviewed
Probab=59.52 E-value=19 Score=28.77 Aligned_cols=34 Identities=21% Similarity=0.488 Sum_probs=26.4
Q ss_pred Ccceee-CCCCCCCcHHHHHHHHHHHHH-HcCceEEeecCC
Q 046531 67 QVPVID-LDGVRGNKLEEIVDQVRAAAE-TWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvID-ls~~~~~~~~~~~~~l~~Ac~-~~GFF~v~nHGI 105 (196)
.||+++ .. .-.++++.+.++.+ +...+.+.|||+
T Consensus 137 ~vpv~~~~~-----~~~eLa~~v~~~l~~~~~avLl~nHG~ 172 (208)
T PRK06754 137 HIPIIENHA-----DIPTLAEEFAKHIQGDSGAVLIRNHGI 172 (208)
T ss_pred EEEEecCCC-----CHHHHHHHHHHHhccCCcEEEECCCce
Confidence 478875 32 23678899999987 778899999996
No 41
>PRK03634 rhamnulose-1-phosphate aldolase; Provisional
Probab=57.62 E-value=10 Score=31.78 Aligned_cols=36 Identities=14% Similarity=0.139 Sum_probs=28.3
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++.+... .-.++++.+.++..+...+.+.|||+
T Consensus 179 ~i~vvpy~~p---gs~eLa~~v~~~l~~~~avLL~nHGv 214 (274)
T PRK03634 179 GVGIVPWMVP---GTDEIGQATAEKMQKHDLVLWPKHGV 214 (274)
T ss_pred ceeEecCCCC---CCHHHHHHHHHHhccCCEEEEcCCCC
Confidence 4788776543 23578888999988888999999997
No 42
>PRK05834 hypothetical protein; Provisional
Probab=56.81 E-value=28 Score=27.59 Aligned_cols=38 Identities=11% Similarity=0.171 Sum_probs=24.9
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcC--ceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWG--FFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~G--FF~v~nHGI 105 (196)
.||+++.....+ ..+..++.+.++..+.. .+.|.|||+
T Consensus 121 ~ipv~~~~~~~~-~~~~la~~v~~~l~~~~~~avLL~nHGv 160 (194)
T PRK05834 121 EISIYDPKDFDD-WYERADTEILRYLQEKNKNFVVIKGYGV 160 (194)
T ss_pred eeeecCccccch-HHHhHHHHHHHHHhhcCCCEEEEcCCcc
Confidence 477765443311 12245677888888755 899999996
No 43
>TIGR01086 fucA L-fuculose phosphate aldolase. Members of this family are L-fuculose phosphate aldolase from various Proteobacteria, encoded in fucose utilization operons. Homologs in other bacteria given similar annotation may share extensive sequence similarity but are not experimenally characterized and are not found in apparent fucose utilization operons; we consider their annotation as L-fuculose phosphate aldolase to be tenuous. This model has been narrowed in scope from the previous version.
Probab=55.99 E-value=14 Score=29.63 Aligned_cols=36 Identities=14% Similarity=0.272 Sum_probs=26.8
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||++.+... .-.++++.+.++..+...+.|.|||+
T Consensus 121 ~i~~v~y~~~---gs~~la~~v~~~~~~~~~vLL~nHG~ 156 (214)
T TIGR01086 121 NIPCVPYATF---GSTKLASEVVAGILKSKAILLLHHGL 156 (214)
T ss_pred CccccCCCCC---ChHHHHHHHHHHhhhCCEEehhcCCC
Confidence 3666665544 23467888888888889999999997
No 44
>TIGR03328 salvage_mtnB methylthioribulose-1-phosphate dehydratase. Members of this family are the methylthioribulose-1-phosphate dehydratase of the methionine salvage pathway. This pathway allows methylthioadenosine, left over from polyamine biosynthesis, to be recycled to methionine.
Probab=55.04 E-value=16 Score=28.75 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=26.8
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHH---HcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAE---TWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~---~~GFF~v~nHGI 105 (196)
.||+++. .. .-.++++.+.++++ +...+.|-|||+
T Consensus 126 ~vp~~~~-~~---gs~ela~~~~~~l~~~~~~~avll~nHGv 163 (193)
T TIGR03328 126 TIPIFEN-TQ---DIARLADSVAPYLEAYPDVPGVLIRGHGL 163 (193)
T ss_pred EEeeecC-CC---ChHHHHHHHHHHHhcCCCCCEEEEcCCcc
Confidence 5888874 22 24678889999986 468899999997
No 45
>PRK06557 L-ribulose-5-phosphate 4-epimerase; Validated
Probab=53.32 E-value=12 Score=30.07 Aligned_cols=37 Identities=19% Similarity=0.119 Sum_probs=27.2
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHH--HHcCceEEeecCC
Q 046531 66 FQVPVIDLDGVRGNKLEEIVDQVRAAA--ETWGFFQVVNHGI 105 (196)
Q Consensus 66 ~~IPvIDls~~~~~~~~~~~~~l~~Ac--~~~GFF~v~nHGI 105 (196)
..||++..... ...+.++++.++. .+...+.+.|||+
T Consensus 129 ~~ip~~~y~~~---g~~ela~~i~~~l~~~~~~~vll~nHG~ 167 (221)
T PRK06557 129 GPIPVGPFALI---GDEAIGKGIVETLKGGRSPAVLMQNHGV 167 (221)
T ss_pred CCeeccCCcCC---CcHHHHHHHHHHhCcCCCCEEEECCCCc
Confidence 35787766543 2356778888888 6777889999997
No 46
>cd00379 Ribosomal_L10_P0 Ribosomal protein L10 family; composed of the large subunit ribosomal protein called L10 in bacteria, P0 in eukaryotes, and L10e in archaea, as well as uncharacterized P0-like eukaryotic proteins. In all three kingdoms, L10 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been sho
Probab=49.25 E-value=62 Score=24.10 Aligned_cols=39 Identities=23% Similarity=0.439 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHcCceEEeec-CCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVVNH-GIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 119 (196)
+..+++++.+.++++.+++++++ |++...+.+++...+.
T Consensus 3 K~~~v~~l~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~ 42 (155)
T cd00379 3 KEELVEELKELLKKYKSVVVVDYRGLTVAQLTELRKELRE 42 (155)
T ss_pred hHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 46788999999999988888874 7998888888877665
No 47
>COG1402 Uncharacterized protein, putative amidase [General function prediction only]
Probab=48.62 E-value=59 Score=27.02 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCc--eEEee-cCCCHHHHHHHHHHHHHHhc
Q 046531 81 LEEIVDQVRAAAETWGF--FQVVN-HGIPLNVLEEMIEGIRKFNE 122 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GF--F~v~n-HGI~~~li~~~~~~~~~FF~ 122 (196)
-......+.+....+|| |+++| ||=....+..+.+..+..|.
T Consensus 88 ~~~~~~~~~~Sl~~~Gfrk~v~vNgHGGN~~~l~~v~~el~~~~~ 132 (250)
T COG1402 88 LIALLVELVESLARHGFRKFVIVNGHGGNSAALEIVARELRAELG 132 (250)
T ss_pred HHHHHHHHHHHHHhcCccEEEEEecCCCcHHHHHHHHHHHHHhcc
Confidence 35677889999999999 66665 88777777777666665554
No 48
>PF11243 DUF3045: Protein of unknown function (DUF3045); InterPro: IPR021405 This entry is represented by Bacteriophage T4, Gp30.1; it is a family of uncharacterised viral proteins.
Probab=46.65 E-value=17 Score=24.68 Aligned_cols=21 Identities=14% Similarity=0.153 Sum_probs=17.7
Q ss_pred HHHHHHHHHcCceEEeecCCC
Q 046531 86 DQVRAAAETWGFFQVVNHGIP 106 (196)
Q Consensus 86 ~~l~~Ac~~~GFF~v~nHGI~ 106 (196)
+.|.+-|-+.||.||..|-+.
T Consensus 36 ~~if~eCVeqGFiYVs~~~~~ 56 (89)
T PF11243_consen 36 EPIFKECVEQGFIYVSKYWMD 56 (89)
T ss_pred cHHHHHHHhcceEEEEeeeec
Confidence 467888999999999888774
No 49
>PRK09220 methylthioribulose-1-phosphate dehydratase; Provisional
Probab=43.10 E-value=34 Score=27.23 Aligned_cols=35 Identities=20% Similarity=0.389 Sum_probs=25.5
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcC---ceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWG---FFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI 105 (196)
.||++.-.. .-.++++.+.++..+.. .+.|.|||+
T Consensus 134 ~vp~~~~~~----~~~eLa~~v~~~l~~~~~~~avlL~nHGv 171 (204)
T PRK09220 134 VVPIFDNDQ----DIARLAARVAPYLDAQPLRYGYLIRGHGL 171 (204)
T ss_pred EEeeecCCC----CHHHHHHHHHHHHHhCCCCcEEEECCCce
Confidence 466654211 24678899999999864 799999996
No 50
>PF03460 NIR_SIR_ferr: Nitrite/Sulfite reductase ferredoxin-like half domain; InterPro: IPR005117 Sulphite reductases (SiRs) and related nitrite reductases (NiRs) catalyse the six-electron reduction reactions of sulphite to sulphide, and nitrite to ammonia, respectively. The Escherichia coli SiR enzyme is a complex composed of two proteins, a flavoprotein alpha-component (SiR-FP) and a hemoprotein beta-component (SiR-HP), and has an alpha(8)beta(4) quaternary structure []. SiR-FP contains both FAD and FMN, while SiR-HP contains a Fe(4)S(4) cluster coupled to a sirohaem through a cysteine bridge. Electrons are transferred from NADPH to FAD, and on to FMN in SiR-FP, from which they are transferred to the metal centre of SiR-HP, where they reduce the siroheme-bound sulphite. SiR-HP has a two-fold symmetry, which generates a distinctive three-domain alpha/beta fold that controls assembly and reactivity []. This entry describes the ferrodoxin-like (alpha/beta sandwich) domain, which consists of a duplication containing two subdomains of this fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3B0H_A 4GEP_A 2GEP_A 2AOP_A 5AOP_A 6GEP_A 4AOP_A 1AOP_A 3AOP_A 8GEP_A ....
Probab=43.07 E-value=39 Score=21.52 Aligned_cols=38 Identities=21% Similarity=0.421 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHcC--ceEEe------ecCCCHHHHHHHHHHHHH
Q 046531 82 EEIVDQVRAAAETWG--FFQVV------NHGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~G--FF~v~------nHGI~~~li~~~~~~~~~ 119 (196)
.+....|.+.++++| .+.++ -|||+.+-++++++..++
T Consensus 23 ~~~l~~la~ia~~yg~~~irlT~~Q~l~l~~v~~~~~~~i~~~L~~ 68 (69)
T PF03460_consen 23 AEQLRALAEIAEKYGDGEIRLTTRQNLQLRGVPEENLPAIFEELKE 68 (69)
T ss_dssp HHHHHHHHHHHHHHSTSEEEEETTSCEEEEEEEGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCeEEECCCCeEEEeCCCHHHHHHHHHHHHc
Confidence 356788889999887 55554 478999988888877654
No 51
>PRK06661 hypothetical protein; Provisional
Probab=42.26 E-value=23 Score=28.84 Aligned_cols=37 Identities=8% Similarity=0.103 Sum_probs=26.4
Q ss_pred cceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 68 VPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 68 IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
||..++..... +..+.++.+.+++.+...+.+.|||+
T Consensus 124 i~~~~~~~~~~-~~~~~~~~~a~~l~~~~avll~nHG~ 160 (231)
T PRK06661 124 ISYHNYNSLAL-DADKQSSRLVNDLKQNYVMLLRNHGA 160 (231)
T ss_pred ceecCCCcccc-CchhHHHHHHHHhCCCCEEEECCCCC
Confidence 56655443311 12466788999999999999999996
No 52
>PRK07490 hypothetical protein; Provisional
Probab=41.25 E-value=25 Score=28.85 Aligned_cols=25 Identities=24% Similarity=0.247 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCceEEeecCC
Q 046531 81 LEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
..+.++.+.+++.+.-.+.+.|||+
T Consensus 145 ~~ela~~v~~~l~~~~avlL~nHG~ 169 (245)
T PRK07490 145 LEEEGERLAGLLGDKRRLLMGNHGV 169 (245)
T ss_pred cHHHHHHHHHHhCcCCEEEECCCCc
Confidence 3477889999999888999999996
No 53
>TIGR02409 carnitine_bodg gamma-butyrobetaine hydroxylase. Members of this protein family are gamma-butyrobetaine hydroxylase, both bacterial and eukarytotic. This enzyme catalyzes the last step in the conversion of lysine to carnitine. Carnitine can serve as a compatible solvent in bacteria and also participates in fatty acid metabolism.
Probab=39.59 E-value=49 Score=28.71 Aligned_cols=54 Identities=9% Similarity=0.044 Sum_probs=38.7
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcC
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQ 123 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 123 (196)
...+|.||++.+.. ......++.+|..++|+..+.|=.++.+. +.+.++.|-.+
T Consensus 107 ~~~~~~~d~~~~~~--~~~~~~~~~~~l~~~G~v~~rg~~~~~~~---~~~~~~~~G~~ 160 (366)
T TIGR02409 107 ELSLPKFDHEAVMK--DDSVLLDWLSAVRDVGIAVLKGAPTKPGA---VEKLGKRIGFI 160 (366)
T ss_pred cccCCceeHHHHhC--CHHHHHHHHHHHHhccEEEEeCCCCCHHH---HHHHHHHhccc
Confidence 35688999877643 24567889999999999999988876654 44555555443
No 54
>PF12368 DUF3650: Protein of unknown function (DUF3650) ; InterPro: IPR022111 This domain family is found in bacteria, and is approximately 30 amino acids in length. The family is found in association with PF00581 from PFAM. There is a single completely conserved residue N that may be functionally important.
Probab=37.66 E-value=17 Score=19.66 Aligned_cols=17 Identities=24% Similarity=0.319 Sum_probs=12.4
Q ss_pred eEEeecCCCHHHHHHHH
Q 046531 98 FQVVNHGIPLNVLEEMI 114 (196)
Q Consensus 98 F~v~nHGI~~~li~~~~ 114 (196)
.||..||++.+-+.+-+
T Consensus 9 rYV~eh~ls~ee~~~RL 25 (28)
T PF12368_consen 9 RYVKEHGLSEEEVAERL 25 (28)
T ss_pred hhHHhcCCCHHHHHHHH
Confidence 47889999987665443
No 55
>PF01471 PG_binding_1: Putative peptidoglycan binding domain; InterPro: IPR002477 This entry represents peptidoglycan binding domain (PGBD), as well as related domains that share the same structure. PGBD may have a general peptidoglycan binding function, has a core structure consisting of a closed, three-helical bundle with a left-handed twist. It is found at the N or C terminus of a variety of enzymes involved in bacterial cell wall degradation [, , ]. Examples are: Muramoyl-pentapeptide carboxypeptidase (3.4.17.8 from EC) N-acetylmuramoyl-L-alanine amidase cwlA precursor (cell wall hydrolase, autolysin, 3.5.1.28 from EC) Autolytic lysozyme (1,4-beta-N-acetylmuramidase, autolysin, 3.2.1.17 from EC) Membrane-bound lytic murein transglycosylase B Zinc-containing D-alanyl-D-alanine-cleaving carboxypeptidase, VanX []. Many of the proteins having this domain are as yet uncharacterised. However, some are known to belong to MEROPS peptidase family M15 (clan MD), subfamily M15A metallopeptidases. A number of the proteins belonging to subfamily M15A are non-peptidase homologues as they either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity. Eukaryotic enzymes can contain structurally similar PGBD-like domains. Matrix metalloproteinases (MMP), which catalyse extracellular matrix degradation, have N-terminal domains that resemble PGBD. Examples are gelatinase A (MMP-2), which degrades type IV collagen [], stromelysin-1 (MMP-3), which plays a role in arthritis and tumour invasion [, ], and gelatinase B (MMP-9) secreted by neutrophils as part of the innate immune defence mechanism []. Several MMPs are implicated in cancer progression, since degradation of the extracellular matrix is an essential step in the cascade of metastasis [].; GO: 0008152 metabolic process; PDB: 1L6J_A 3BKH_A 3BKV_A 1GXD_A 1EAK_D 1CK7_A 1SLM_A 1LBU_A 1SU3_B.
Probab=35.33 E-value=99 Score=18.65 Aligned_cols=42 Identities=17% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCC
Q 046531 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQD 124 (196)
Q Consensus 83 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP 124 (196)
..+..|.......||....-.|+-...+.++.+....++.||
T Consensus 3 ~~v~~lq~~L~~~gy~~~~~~g~~~~~t~~Av~~fQ~~~gL~ 44 (57)
T PF01471_consen 3 PDVKALQQYLNRLGYYPGPVDGIFDPETREAVKAFQKANGLP 44 (57)
T ss_dssp HHHHHHHHHHHHTTTT-SSTTSBSHHHHHHHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHcCCCCCCCCCCcCHHHHHHHHHHHHHcCcC
Confidence 346788889999999955556666666666666666666665
No 56
>cd00398 Aldolase_II Class II Aldolase and Adducin head (N-terminal) domain. Aldolases are ubiquitous enzymes catalyzing central steps of carbohydrate metabolism. Based on enzymatic mechanisms, this superfamily has been divided into two distinct classes (Class I and II). Class II enzymes are further divided into two sub-classes A and B. This family includes class II A aldolases and adducins which has not been ascribed any enzymatic function. Members of this class are primarily bacterial and eukaryotic in origin and include L-fuculose-1-phosphate, L-rhamnulose-1-phosphate aldolases and L-ribulose-5-phosphate 4-epimerases. They all share the ability to promote carbon-carbon bond cleavage and stabilize enolate intermediates using divalent cations.
Probab=35.13 E-value=29 Score=27.56 Aligned_cols=39 Identities=18% Similarity=0.083 Sum_probs=27.5
Q ss_pred CCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 66 FQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 66 ~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
..||+++...... ...++++.+.++..+.-.+.+-|||+
T Consensus 121 ~~ip~~~~~~~~~-~~~~la~~~~~~l~~~~~vll~nHG~ 159 (209)
T cd00398 121 GDIPCTPYMTPET-GEDEIGTQRALGFPNSKAVLLRNHGL 159 (209)
T ss_pred CCeeecCCcCCCc-cHHHHHHHHhcCCCcCCEEEEcCCCC
Confidence 4689988765411 13456677777777778899999997
No 57
>PF08823 PG_binding_2: Putative peptidoglycan binding domain; InterPro: IPR014927 This entry may be a peptidoglycan binding domain.
Probab=34.97 E-value=1.1e+02 Score=20.43 Aligned_cols=37 Identities=14% Similarity=0.303 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHH
Q 046531 82 EEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIR 118 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~ 118 (196)
..+++.|..+.+.+||.+=--||.-.+-..+++....
T Consensus 15 ~~~~~evq~~L~~lGyy~g~~~g~~d~a~~~Al~~~~ 51 (74)
T PF08823_consen 15 GDVAREVQEALKRLGYYKGEADGVWDEATEDALRAWA 51 (74)
T ss_pred HHHHHHHHHHHHHcCCccCCCCCcccHHHHHHHHHHH
Confidence 5788999999999999998889987666665554443
No 58
>PRK08324 short chain dehydrogenase; Validated
Probab=34.95 E-value=1.1e+02 Score=29.00 Aligned_cols=51 Identities=12% Similarity=0.068 Sum_probs=34.6
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcC---ceEEeecCC---------CHHHHHHHHHHHHHHh
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWG---FFQVVNHGI---------PLNVLEEMIEGIRKFN 121 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~G---FF~v~nHGI---------~~~li~~~~~~~~~FF 121 (196)
.||++++... . .++++++.++.++.| .+.|.|||+ .-..+..+.+.++.++
T Consensus 155 ~v~~~py~~p---g-~~l~~~~~~~~~~~~~~~~~lL~nHG~~~~G~~~~eA~~~~~~~e~~a~~~~ 217 (681)
T PRK08324 155 RVGWVPYVRP---G-FDLALAIAEAVRANPGAEGVVLGKHGLFTWGDTAKEAYERTIEIITRAEEYI 217 (681)
T ss_pred ceEEcCccCC---C-hHHHHHHHHHHHhCCCCcEEEECCCCCeeccCCHHHHHHHHHHHHHHHHHHH
Confidence 4777766554 2 356677778877765 889999997 2345566666677766
No 59
>cd05797 Ribosomal_L10 Ribosomal protein L10 family, L10 subfamily; composed of bacterial 50S ribosomal protein and eukaryotic mitochondrial 39S ribosomal protein, L10. L10 occupies the L7/L12 stalk of the ribosome. The N-terminal domain (NTD) of L10 interacts with L11 protein and forms the base of the L7/L12 stalk, while the extended C-terminal helix binds to two or three dimers of the NTD of L7/L12 (L7 and L12 are identical except for an acetylated N-terminus). The L7/L12 stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-in
Probab=34.72 E-value=1.4e+02 Score=22.39 Aligned_cols=39 Identities=23% Similarity=0.335 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHHcCceEEeec-CCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVVNH-GIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 119 (196)
...++++|.+.+++..+++++++ |++...+.+++...++
T Consensus 5 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 44 (157)
T cd05797 5 KEEIVAELKEKLKEAKSVVVADYRGLTVAQLTELRKELRE 44 (157)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45677888888888877777764 7888777777777664
No 60
>cd05796 Ribosomal_P0_like Ribosomal protein L10 family, P0-like protein subfamily; composed of uncharacterized eukaryotic proteins with similarity to the 60S ribosomal protein P0, including the Saccharomyces cerevisiae protein called mRNA turnover protein 4 (MRT4). MRT4 may be involved in mRNA decay. P0 forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. It occupies the L7/L12 stalk of the ribosome. The stalk is known to contain the binding site for elongation factors EF-G and EF-Tu; however, there is disagreement as to whether or not P0 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, P0 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WAS
Probab=33.85 E-value=1.1e+02 Score=23.31 Aligned_cols=39 Identities=15% Similarity=0.377 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCceEEe-ecCCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVV-NHGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~-nHGI~~~li~~~~~~~~~ 119 (196)
+.+.+++|.+.+.++-.++|+ .+|++...+.++++..|.
T Consensus 3 K~~~v~~l~e~l~~y~~v~iv~~~gl~~~ql~~iR~~lr~ 42 (163)
T cd05796 3 KQKLVENIREAVDKYKYIYVFSVDNMRNNKLKDIRQEWKD 42 (163)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCCHHHHHHHHHHhcC
Confidence 467888999999998877777 478999999988888764
No 61
>PRK00099 rplJ 50S ribosomal protein L10; Reviewed
Probab=33.16 E-value=1.5e+02 Score=22.69 Aligned_cols=39 Identities=18% Similarity=0.256 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHcCceEEeec-CCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVVNH-GIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~nH-GI~~~li~~~~~~~~~ 119 (196)
+...+++|.+.+++.-+++++++ |++...+.+++...+.
T Consensus 6 K~~~v~~l~~~l~~~~~v~v~~~~gl~~~~~~~lR~~lr~ 45 (172)
T PRK00099 6 KKEIVAELAEKLKKAQSAVVADYRGLTVAQMTELRKKLRE 45 (172)
T ss_pred HHHHHHHHHHHHHhCCEEEEEecCCCcHHHHHHHHHHHHH
Confidence 45566777777777666666553 6777666666666654
No 62
>cd05795 Ribosomal_P0_L10e Ribosomal protein L10 family, P0 and L10e subfamily; composed of eukaryotic 60S ribosomal protein P0 and the archaeal P0 homolog, L10e. P0 or L10e forms a tight complex with multiple copies of the small acidic protein L12(e). This complex forms a stalk structure on the large subunit of the ribosome. The stalk is known to contain the binding site for elongation factors G and Tu (EF-G and EF-Tu, respectively); however, there is disagreement as to whether or not L10 is involved in forming the binding site. The stalk is believed to be associated with GTPase activities in protein synthesis. In a neuroblastoma cell line, L10 has been shown to interact with the SH3 domain of Src and to activate the binding of the Nck1 adaptor protein with skeletal proteins such as the Wiskott-Aldrich Syndrome Protein (WASP) and the WASP-interacting protein (WIP). These eukaryotic and archaeal P0 sequences have an additional C-terminal domain homologous with acidic proteins P1 and P2.
Probab=33.10 E-value=1.2e+02 Score=23.54 Aligned_cols=39 Identities=13% Similarity=0.272 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHcCceEEee-cCCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (196)
+...+++|.+.+.++-.++|++ .|++...+.++++..++
T Consensus 3 K~~~v~el~e~l~~~~~v~v~~~~gl~~~ql~~lR~~lr~ 42 (175)
T cd05795 3 KKEYVEKLTELLKSYPKVLIVDADNVGSKQLQKIRRSLRG 42 (175)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEecCCChHHHHHHHHHhhC
Confidence 4567888888888888777775 68888888888888774
No 63
>PRK06770 hypothetical protein; Provisional
Probab=31.95 E-value=88 Score=24.67 Aligned_cols=41 Identities=24% Similarity=0.460 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhhh
Q 046531 84 IVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEFY 132 (196)
Q Consensus 84 ~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~~ 132 (196)
.+.|-..|.+.|||++++ ++-++.+....+. -..++|.+|.
T Consensus 79 MtHQKV~A~~KwG~~~mT-----~enI~~l~~~i~~---sn~~~k~~yl 119 (180)
T PRK06770 79 MTHQKVKADEKWGFIEMT-----QENIEKLKDIINS---SNFVQKEELL 119 (180)
T ss_pred HHhhhhhhhcccceEecC-----HHHHHHHHHHHhc---cchhhHHHHH
Confidence 344555799999999955 7777777766653 3357787764
No 64
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=31.87 E-value=1.1e+02 Score=24.08 Aligned_cols=33 Identities=21% Similarity=0.381 Sum_probs=23.5
Q ss_pred HHHHHHHHHHcCceEEe----------------------ecCCCHHHHHHHHHHH
Q 046531 85 VDQVRAAAETWGFFQVV----------------------NHGIPLNVLEEMIEGI 117 (196)
Q Consensus 85 ~~~l~~Ac~~~GFF~v~----------------------nHGI~~~li~~~~~~~ 117 (196)
..++.++|++.||..+. +|+||++.+.+-+..+
T Consensus 83 ~~~~ik~Ak~~Gf~I~L~y~~i~~~elavERVk~RVa~GGH~IpED~Ir~RY~rs 137 (187)
T COG4185 83 ILELIKTAKAAGFYIVLNYIVIDSVELAVERVKLRVAKGGHDIPEDKIRRRYRRS 137 (187)
T ss_pred HHHHHHHHHhCCeEEEEEEEEeCcHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 45677889999996543 6888888877655443
No 65
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=30.94 E-value=1.7e+02 Score=24.66 Aligned_cols=40 Identities=25% Similarity=0.296 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhc
Q 046531 83 EIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNE 122 (196)
Q Consensus 83 ~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~ 122 (196)
+-.++|.++.++.|.+.--|-.|-..++.++.+.+.++|.
T Consensus 106 e~~~~l~~~a~~v~vv~a~NfSiGvnll~~l~~~aak~l~ 145 (266)
T COG0289 106 EQLEKLREAAEKVPVVIAPNFSLGVNLLFKLAEQAAKVLD 145 (266)
T ss_pred HHHHHHHHHHhhCCEEEeccchHHHHHHHHHHHHHHHhcC
Confidence 3456666666666666666666666666666666666665
No 66
>PF11043 DUF2856: Protein of unknown function (DUF2856); InterPro: IPR020500 This phage protein modulates the activity of the host recBCD nuclease and thus protects the linear double stranded DNA from exonuclease degradation [].
Probab=30.76 E-value=74 Score=21.71 Aligned_cols=24 Identities=25% Similarity=0.272 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHhh
Q 046531 107 LNVLEEMIEGIRKFNEQDVELKKE 130 (196)
Q Consensus 107 ~~li~~~~~~~~~FF~LP~eeK~~ 130 (196)
.++++++..--..|.+||.|.|..
T Consensus 20 sEVL~~~k~N~D~~~aL~~ETKaE 43 (97)
T PF11043_consen 20 SEVLDNIKNNYDAFMALPPETKAE 43 (97)
T ss_pred HHHHHHHHHHHHHHHcCChhhHHH
Confidence 356777777778899999998855
No 67
>PF13376 OmdA: Bacteriocin-protection, YdeI or OmpD-Associated
Probab=30.75 E-value=77 Score=20.05 Aligned_cols=31 Identities=13% Similarity=0.295 Sum_probs=22.2
Q ss_pred ecCCCHHHHHHHHH--HHHHHhc-CCHHHHhhhh
Q 046531 102 NHGIPLNVLEEMIE--GIRKFNE-QDVELKKEFY 132 (196)
Q Consensus 102 nHGI~~~li~~~~~--~~~~FF~-LP~eeK~~~~ 132 (196)
+.-||++|...+.+ .+.+||. ||...+..+.
T Consensus 3 ~~~vP~dl~~aL~~~p~a~~~f~~l~~~~rr~~i 36 (63)
T PF13376_consen 3 EVEVPEDLEAALEANPEAKEFFESLTPSYRREYI 36 (63)
T ss_pred CCCCCHHHHHHHHCCHHHHHHHHHCCHHHHHHHH
Confidence 34578888887776 6777885 8887776653
No 68
>PRK04019 rplP0 acidic ribosomal protein P0; Validated
Probab=29.62 E-value=1.3e+02 Score=25.82 Aligned_cols=39 Identities=23% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHHcCceEEee-cCCCHHHHHHHHHHHHH
Q 046531 81 LEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (196)
+...+++|.+.+.++.+++|++ +|++...++++++..|.
T Consensus 8 K~~~v~el~~~l~~~~~v~iv~~~gl~~~ql~~lR~~lr~ 47 (330)
T PRK04019 8 KKEEVEELKELIKSYPVVGIVDLEGIPARQLQEIRRKLRG 47 (330)
T ss_pred HHHHHHHHHHHHHhCCEEEEEEcCCCCHHHHHHHHHHHHc
Confidence 5677888888888888888776 68888888888888774
No 69
>COG0244 RplJ Ribosomal protein L10 [Translation, ribosomal structure and biogenesis]
Probab=28.26 E-value=2e+02 Score=22.39 Aligned_cols=40 Identities=18% Similarity=0.308 Sum_probs=32.9
Q ss_pred cHHHHHHHHHHHHHHcCceEEee-cCCCHHHHHHHHHHHHH
Q 046531 80 KLEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 80 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (196)
....++++|.+..++...|.|++ +|++..-+.++++..|+
T Consensus 7 ~K~~~v~el~e~~~~s~~~~i~dy~Gl~~~ql~~lR~~lr~ 47 (175)
T COG0244 7 WKKELVAELKELIKESPSVVIVDYRGLTVAQLTELRKKLRE 47 (175)
T ss_pred HHHHHHHHHHHHHhhCCEEEEEEeCCCcHHHHHHHHHHHHh
Confidence 35678889999999887777776 69999999988888876
No 70
>PF00586 AIRS: AIR synthase related protein, N-terminal domain; InterPro: IPR000728 This family includes Hydrogen expression/formation protein, HypE, which may be involved in the maturation of NifE hydrogenase; AIR synthase and FGAM synthase, which are involved in de novo purine biosynthesis; and selenide, water dikinase, an enzyme which synthesizes selenophosphate from selenide and ATP.; GO: 0003824 catalytic activity; PDB: 3VIU_A 2Z1T_A 2Z1U_A 3C9U_B 3C9S_A 3C9R_A 1VQV_A 3C9T_B 3M84_A 3QTY_A ....
Probab=27.96 E-value=78 Score=21.48 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHcCceEEeec
Q 046531 81 LEEIVDQVRAAAETWGFFQVVNH 103 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~nH 103 (196)
-.++++.+.++|+++|.-.+-+|
T Consensus 73 l~~~~~Gi~~~~~~~g~~ivGG~ 95 (96)
T PF00586_consen 73 LKEIVKGIAEACREFGIPIVGGD 95 (96)
T ss_dssp HHHHHHHHHHHHHHHT-EEEEEE
T ss_pred HHHHHHHHHHHHHHhCCcEeCcC
Confidence 46788999999999999887665
No 71
>PRK15331 chaperone protein SicA; Provisional
Probab=27.62 E-value=86 Score=24.40 Aligned_cols=43 Identities=21% Similarity=0.337 Sum_probs=34.3
Q ss_pred cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcC
Q 046531 80 KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQ 123 (196)
Q Consensus 80 ~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~L 123 (196)
+-.++++.|.+|..+ |==.-.=|||+++.++.++..+.+||..
T Consensus 8 ~~~~~~~~i~~al~~-G~tlk~l~gis~~~le~iY~~Ay~~y~~ 50 (165)
T PRK15331 8 SEERVAEMIWDAVSE-GATLKDVHGIPQDMMDGLYAHAYEFYNQ 50 (165)
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHhCCCHHHHHHHHHHHHHHHHC
Confidence 346778888888887 4333346999999999999999999963
No 72
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=24.58 E-value=1.3e+02 Score=21.60 Aligned_cols=43 Identities=23% Similarity=0.244 Sum_probs=31.8
Q ss_pred eeeCCCCCCCcHHHHHHHHHHHHHHcCceEEee-cCCCHHHHHHHHHHHH
Q 046531 70 VIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEMIEGIR 118 (196)
Q Consensus 70 vIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~ 118 (196)
+||++. .+.+....+.|.+.|-=.|++ -|.+.+.++.+.+.++
T Consensus 71 vIDfT~------p~~~~~~~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~ 114 (124)
T PF01113_consen 71 VIDFTN------PDAVYDNLEYALKHGVPLVIGTTGFSDEQIDELEELAK 114 (124)
T ss_dssp EEEES-------HHHHHHHHHHHHHHT-EEEEE-SSSHHHHHHHHHHHTT
T ss_pred EEEcCC------hHHhHHHHHHHHhCCCCEEEECCCCCHHHHHHHHHHhc
Confidence 678873 467777888888889999995 5898888887776554
No 73
>KOG2631 consensus Class II aldolase/adducin N-terminal domain protein [Carbohydrate transport and metabolism]
Probab=24.46 E-value=2.2e+02 Score=23.23 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=37.8
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHc---CceEEeecCC-----CHHHHHHHHHHHHHHhcCCHHH
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETW---GFFQVVNHGI-----PLNVLEEMIEGIRKFNEQDVEL 127 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~---GFF~v~nHGI-----~~~li~~~~~~~~~FF~LP~ee 127 (196)
...||+|+=... ...+.+.|.+|.+.+ --+.|.|||| .-+-..-+.+.-.-.|+|..+-
T Consensus 154 ~L~vPIIeNt~~----E~~L~D~l~~aie~YP~tcAVLVR~HGvyvWG~TWekaKt~~EcydYLfelaikm 220 (238)
T KOG2631|consen 154 TLVVPIIENTPS----ESDLKDSLKKAIELYPDTCAVLVRRHGVYVWGPTWEKAKTMTECYDYLFELAIKM 220 (238)
T ss_pred eEEEeeecCCch----HHHHHHHHHHHHHhCCcceEEEEecCcEEEecCcHHHHHHHHHHHHHHHHHHHHH
Confidence 346999986553 345678888888866 3456779998 3444444455555667764433
No 74
>COG3384 Aromatic ring-opening dioxygenase, catalytic LigB subunit related enzyme [Amino acid transport and metabolism]
Probab=24.21 E-value=1.4e+02 Score=25.17 Aligned_cols=39 Identities=18% Similarity=0.300 Sum_probs=29.1
Q ss_pred CCCCcceeeCCCCCC-C--cHHHHHHHHHHHHHHcCceEEeecC
Q 046531 64 TNFQVPVIDLDGVRG-N--KLEEIVDQVRAAAETWGFFQVVNHG 104 (196)
Q Consensus 64 ~~~~IPvIDls~~~~-~--~~~~~~~~l~~Ac~~~GFF~v~nHG 104 (196)
++..||||-+|-... + ..-++.++|+++-++ | ..|+.-|
T Consensus 129 PdadipVV~iSi~~~~~~~~h~~lG~al~~lree-~-vlilaSG 170 (268)
T COG3384 129 PDADIPVVQISIDCTLSPADHYELGRALRKLREE-G-VLILASG 170 (268)
T ss_pred CccCCcEEEEecCCCCCHHHHHHHHHHHHHHHhC-C-EEEEecC
Confidence 567899999987643 2 556789999999998 6 5556555
No 75
>PRK11460 putative hydrolase; Provisional
Probab=23.88 E-value=2.1e+02 Score=22.79 Aligned_cols=40 Identities=13% Similarity=0.155 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHcCc---eEE---eecCCCHHHHHHHHHHHHHHh
Q 046531 82 EEIVDQVRAAAETWGF---FQV---VNHGIPLNVLEEMIEGIRKFN 121 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~GF---F~v---~nHGI~~~li~~~~~~~~~FF 121 (196)
.+.++++.+++++.|. |.+ .+|+|+.+.++++.+..++++
T Consensus 164 ~~~~~~~~~~L~~~g~~~~~~~~~~~gH~i~~~~~~~~~~~l~~~l 209 (232)
T PRK11460 164 VAHAVAAQEALISLGGDVTLDIVEDLGHAIDPRLMQFALDRLRYTV 209 (232)
T ss_pred HHHHHHHHHHHHHCCCCeEEEEECCCCCCCCHHHHHHHHHHHHHHc
Confidence 4456777777877775 232 489999988888888777776
No 76
>PRK06208 hypothetical protein; Provisional
Probab=23.64 E-value=68 Score=26.93 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHcCceEEeecCC
Q 046531 82 EEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.++++.+.++.++...+.+.|||+
T Consensus 177 ~ela~~va~~l~~~~avLL~NHGv 200 (274)
T PRK06208 177 TSEGRRIAAALGTHKAVILQNHGL 200 (274)
T ss_pred hHHHHHHHHHhccCCEEEECCCCc
Confidence 577888999999999999999996
No 77
>cd04367 IlGF_insulin_like IlGF_like family, insulin_like subgroup, specific to vertebrates. Members include a number of peptides including insulin and insulin-like growth factors I and II, which play a variety of roles in controlling processes such as metabolism, growth and differentiation, and reproduction. On a cellular level they affect cell cycle, apoptosis, cell migration, and differentiation. With the exception of the insulin-like growth factors, the active forms of these peptide hormones are composed of two chains (A and B) linked by two disulfide bonds; the arrangement of four cysteines is conserved in the "A" chain: Cys1 is linked by a disulfide bond to Cys3, Cys2 and Cys4 are linked by interchain disulfide bonds to cysteines in the "B" chain. This alignment contains both chains, plus the intervening linker region, arranged as found in the propeptide form. Propeptides are cleaved to yield two separate chains linked covalently by the two disulfide bonds.
Probab=23.09 E-value=59 Score=22.07 Aligned_cols=24 Identities=21% Similarity=0.326 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHcCceEEeecCC
Q 046531 82 EEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.+++++|.-.|.+-|||+--..+.
T Consensus 8 s~LvdaL~~VCG~RGF~~~pk~~r 31 (79)
T cd04367 8 SHLVDALYLVCGDRGFFYTPKRRR 31 (79)
T ss_pred HHHHHHHHHHHccCCcccCCcccc
Confidence 467889999999999999766554
No 78
>COG1010 CobJ Precorrin-3B methylase [Coenzyme metabolism]
Probab=22.72 E-value=2.5e+02 Score=23.35 Aligned_cols=51 Identities=24% Similarity=0.221 Sum_probs=33.9
Q ss_pred CCCcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHH---HHHHHHHHH
Q 046531 65 NFQVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLN---VLEEMIEGI 117 (196)
Q Consensus 65 ~~~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~---li~~~~~~~ 117 (196)
..+.=+|+||++.. .++.+.++|. |+.+-+|..+.-..++.. .+.++++..
T Consensus 127 ~hDF~~ISLSDlLt-Pwe~IekRl~-aAA~adfVi~~YNP~s~~R~~~~~~a~eil 180 (249)
T COG1010 127 GHDFCVISLSDLLT-PWEVIEKRLR-AAAEADFVIALYNPISKRRPEQLGRAFEIL 180 (249)
T ss_pred ccceEEEEhHhcCC-cHHHHHHHHH-HHhhCCEEEEEECCccccchHHHHHHHHHH
Confidence 34567899998765 3665555555 555679999998888865 444444333
No 79
>PRK06486 hypothetical protein; Provisional
Probab=22.71 E-value=69 Score=26.60 Aligned_cols=24 Identities=21% Similarity=0.246 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHcCceEEeecCC
Q 046531 82 EEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 82 ~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.+.++.+.++..+...+.|.|||+
T Consensus 162 ~ela~~va~al~~~~avLL~nHG~ 185 (262)
T PRK06486 162 AAEGDRIARAMGDADIVFLKNHGV 185 (262)
T ss_pred hhHHHHHHHHhCcCCEEEECCCCC
Confidence 467888999998999999999997
No 80
>PRK07044 aldolase II superfamily protein; Provisional
Probab=22.58 E-value=87 Score=25.74 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=25.8
Q ss_pred CcceeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCC
Q 046531 67 QVPVIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGI 105 (196)
Q Consensus 67 ~IPvIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI 105 (196)
.||+++...+.. ..+.++.+.++..+..-+.+-|||+
T Consensus 138 ~i~~~~y~~~~~--~~e~~~~va~~l~~~~avLL~nHGv 174 (252)
T PRK07044 138 RLAYHDYEGIAL--DLDEGERLVADLGDKPAMLLRNHGL 174 (252)
T ss_pred CceeeCCCCCcC--CHHHHHHHHHHhccCCEEEECCCCc
Confidence 477776643211 1345678888888888999999996
No 81
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=22.38 E-value=2.7e+02 Score=22.85 Aligned_cols=39 Identities=28% Similarity=0.361 Sum_probs=29.8
Q ss_pred cHHHHHHHHHHHHHHcCceEEee-cCCCHHHHHHHHHHHHH
Q 046531 80 KLEEIVDQVRAAAETWGFFQVVN-HGIPLNVLEEMIEGIRK 119 (196)
Q Consensus 80 ~~~~~~~~l~~Ac~~~GFF~v~n-HGI~~~li~~~~~~~~~ 119 (196)
.+.+....+.+||.+.||- +-- -||+.+-...+.+.+.+
T Consensus 161 ~~leE~~avA~aca~~g~~-lEPTGGIdl~Nf~~I~~i~ld 200 (236)
T TIGR03581 161 KHLEEYAAVAKACAKHGFY-LEPTGGIDLDNFEEIVQIALD 200 (236)
T ss_pred ccHHHHHHHHHHHHHcCCc-cCCCCCccHHhHHHHHHHHHH
Confidence 5677889999999999984 543 46998877777766543
No 82
>KOG1602 consensus Cis-prenyltransferase [Lipid transport and metabolism]
Probab=22.23 E-value=2.4e+02 Score=23.68 Aligned_cols=48 Identities=13% Similarity=0.126 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHcCceEE-------eecCCCHHHHHHHHHHHHHHhcCCHHHHhh
Q 046531 83 EIVDQVRAAAETWGFFQV-------VNHGIPLNVLEEMIEGIRKFNEQDVELKKE 130 (196)
Q Consensus 83 ~~~~~l~~Ac~~~GFF~v-------~nHGI~~~li~~~~~~~~~FF~LP~eeK~~ 130 (196)
.....|.+-|.++|.=+| -|-+=+++-++.++..+++-++.+.+....
T Consensus 67 ~~l~~ile~C~~lGI~~vT~fAFSieNFkRs~eEVd~LM~L~~~k~~~~~~~~~~ 121 (271)
T KOG1602|consen 67 EALKEILELCKELGIKEVTVFAFSIENFKRSPEEVDGLMDLALEKIERLLEQGEK 121 (271)
T ss_pred HHHHHHHHHHHHcCCcEEEEEEEehhhhCCCHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 456788889999997554 488889999999999999999988877543
No 83
>KOG4513 consensus Phosphoglycerate mutase [Carbohydrate transport and metabolism]
Probab=21.12 E-value=90 Score=27.84 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHHHcCceEEe--ecCCC
Q 046531 81 LEEIVDQVRAAAETWGFFQVV--NHGIP 106 (196)
Q Consensus 81 ~~~~~~~l~~Ac~~~GFF~v~--nHGI~ 106 (196)
....+..|.+||++.|+.+++ +||-.
T Consensus 434 tD~aig~Iy~A~~~~~y~lvvTADHGNA 461 (531)
T KOG4513|consen 434 TDEAIGKIYDAIEQVGYILVVTADHGNA 461 (531)
T ss_pred HHHHHHHHHHHHHhcCcEEEEEcCCCCH
Confidence 356778999999999999998 68863
No 84
>cd07041 STAS_RsbR_RsbS_like Sulphate Transporter and Anti-Sigma factor antagonist domain of the "stressosome" complex proteins RsbS and RsbR, regulators of the bacterial stress activated alternative sigma factor sigma-B by phosphorylation. The STAS (Sulphate Transporter and Anti-Sigma factor antagonist) domain of proteins related to RsbS and RsbR which are part of the "stressosome" complex that plays an important role in the regulation of the bacterial stress activated alternative sigma factor sigma-B. During stress conditions RsbS and RsbR are phosphorylated which leads to the release of RsbT, an activator of of the RsbU phosphatase, which in turn activates RsbV which leads to the release and activation of sigma factor B. RsbS is a single domain protein (STAS domain), while RsbR-like proteins have a well-conserved C-terminal STATS domain and a variable N-terminal domain. The STAS domain is also found in the C- terminal region of sulphate transporters and anti-anti-sigma factors.
Probab=20.97 E-value=2.8e+02 Score=18.87 Aligned_cols=43 Identities=23% Similarity=0.338 Sum_probs=27.0
Q ss_pred eeeCCCCCC-C-cHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHH
Q 046531 70 VIDLDGVRG-N-KLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEM 113 (196)
Q Consensus 70 vIDls~~~~-~-~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~ 113 (196)
||||+...- | .--....++.+.|+..| ..+.-.|+.+.+.+-+
T Consensus 45 vlDls~v~~iDssg~~~l~~~~~~~~~~g-~~l~l~g~~~~v~~~l 89 (109)
T cd07041 45 IIDLTGVPVIDSAVARHLLRLARALRLLG-ARTILTGIRPEVAQTL 89 (109)
T ss_pred EEECCCCchhcHHHHHHHHHHHHHHHHcC-CeEEEEeCCHHHHHHH
Confidence 566655431 2 22346677777888888 4777788887765543
No 85
>COG0325 Predicted enzyme with a TIM-barrel fold [General function prediction only]
Probab=20.97 E-value=3e+02 Score=22.60 Aligned_cols=44 Identities=16% Similarity=0.312 Sum_probs=34.2
Q ss_pred cHHHHHHHHHHHHHHcC-----ceEEe------ecCCCHHHHHHHHHHHHHHhcC
Q 046531 80 KLEEIVDQVRAAAETWG-----FFQVV------NHGIPLNVLEEMIEGIRKFNEQ 123 (196)
Q Consensus 80 ~~~~~~~~l~~Ac~~~G-----FF~v~------nHGI~~~li~~~~~~~~~FF~L 123 (196)
++..++++|.+...++| |.||- .||++++-+..+....+++-+|
T Consensus 101 Dr~klA~~l~kra~~~~~~l~v~iQVNi~~E~sK~G~~~~e~~~~~~~~~~~~~L 155 (228)
T COG0325 101 DRLKLAKELNKRALELPKPLNVLIQVNISGEESKSGVPPEELDELAQEVQELPNL 155 (228)
T ss_pred CHHHHHHHHHHHHHhCCCCceEEEEEecCCccccCCCCHHHHHHHHHHHHhCCCC
Confidence 57889999999888988 66664 3899988888877777765444
No 86
>PF00466 Ribosomal_L10: Ribosomal protein L10; InterPro: IPR001790 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. On the basis of sequence similarities the following prokaryotic and eukaryotic ribosomal proteins can be grouped: Bacterial 50S ribosomal protein L10; Archaebacterial acidic ribosomal protein P0 homologue (L10E); Eukaryotic 60S ribosomal protein P0 (L10E). This entry represents the ribosomal protein L10P family, with includes the above mentioned ribosomal proteins.; GO: 0042254 ribosome biogenesis, 0005622 intracellular; PDB: 3A1Y_G 3D5D_J 3PYT_I 3PYV_I 3D5B_J 3PYO_I 3PYR_I 3MS1_I 3MRZ_I 1VQ9_G ....
Probab=20.25 E-value=2.9e+02 Score=18.72 Aligned_cols=41 Identities=32% Similarity=0.468 Sum_probs=32.2
Q ss_pred cHHHHHHHHHHHHHHcCceEEe-ecCCCHHHHHHHHHHHHHH
Q 046531 80 KLEEIVDQVRAAAETWGFFQVV-NHGIPLNVLEEMIEGIRKF 120 (196)
Q Consensus 80 ~~~~~~~~l~~Ac~~~GFF~v~-nHGI~~~li~~~~~~~~~F 120 (196)
.....+++|.+.+.++=.+.++ -+|++...+.+++...+..
T Consensus 5 ~K~~~v~~~~~~l~~~~~v~v~~~~~l~~~~~~~lR~~l~~~ 46 (100)
T PF00466_consen 5 KKEEIVEELKELLKKSKYVIVVDYNGLSANQLQELRKELRKK 46 (100)
T ss_dssp HHHHHHHHHHHHHHCSSEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCEEEEEEeCCCCHHHHHHHHHHHHhc
Confidence 3567889999999988555555 5789999998888887775
No 87
>cd05153 HomoserineK_II Homoserine Kinase, type II. Homoserine kinase is part of a larger superfamily that includes the catalytic domains of other kinases, such as the typical serine/threonine/tyrosine protein kinases (PKs), RIO kinases, actin-fragmin kinase (AFK), and phosphoinositide 3-kinase (PI3K). This subfamily is composed of unusual homoserine kinases, from a subset of bacteria, which have a PK fold. These proteins do not bear any similarity to the GHMP family homoserine kinases present in most bacteria and eukaryotes. Homoserine kinase catalyzes the transfer of the gamma-phosphoryl group from ATP to L-homoserine producing L-homoserine phosphate, an intermediate in the production of the amino acids threonine, methionine, and isoleucine.
Probab=20.03 E-value=4.3e+02 Score=21.48 Aligned_cols=61 Identities=10% Similarity=0.168 Sum_probs=40.1
Q ss_pred CCcc-eeeCCCCCCCcHHHHHHHHHHHHHHcCceEEeecCCCHHHHHHHHHHHHHHhcCCHHHHhhh
Q 046531 66 FQVP-VIDLDGVRGNKLEEIVDQVRAAAETWGFFQVVNHGIPLNVLEEMIEGIRKFNEQDVELKKEF 131 (196)
Q Consensus 66 ~~IP-vIDls~~~~~~~~~~~~~l~~Ac~~~GFF~v~nHGI~~~li~~~~~~~~~FF~LP~eeK~~~ 131 (196)
..++ |||+....- ...+..|..++..|.+. ..++.+.+..+.+++.=.+...|+.+++..+
T Consensus 192 ~~~~~iIDfe~a~~---g~~~~Dla~~~~~~~~~--~~~~~~~~~~~~~l~gY~~~~~ls~~e~~~l 253 (296)
T cd05153 192 DELSGVIDFYFACT---DAFLYDLAITLNDWCFD--EDGALDPERAQALLAGYQAVRPLTEAERAAL 253 (296)
T ss_pred CceEEEeehhhhcC---chHHHHHHHHHHHHHhC--ccCCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 3455 999966532 23455666666666553 3566788888887777777777888887554
Done!