AmiGO: BLAST Results

Query Summary

Your job contains 1 sequence.
Parameters: Threshold: 0.001; Maximum number of alignments shown: 100; BLAST filter: on
Query Sequence

>046540
MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP
PKSCSNEIVIFFLSLIARLILALTVAALLIYHP
High Scoring Gene Products


Symbol, full name	Information	P value
BLAST match view associations BLAST with EC1.4 EC1.4 EC1.4 AT4G39340	protein from Arabidopsis thaliana	3.8e-07
BLAST match view associations BLAST with EC1.2 EC1.2 EC1.2 AT2G21740	protein from Arabidopsis thaliana	1.3e-06
BLAST match view associations BLAST with EC1.3 EC1.3 EC1.3 AT2G21750	protein from Arabidopsis thaliana	7.0e-06
BLAST match view associations BLAST with EC1.5 EC1.5 EC1.5 AT5G64720	protein from Arabidopsis thaliana	0.00085
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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046540
        (93 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2136293 - symbol:EC1.4 "AT4G39340" species:370...   116  3.8e-07   1
TAIR|locus:2052536 - symbol:EC1.2 "AT2G21740" species:370...   111  1.3e-06   1
TAIR|locus:2052556 - symbol:EC1.3 "AT2G21750" species:370...   104  7.0e-06   1
TAIR|locus:2176080 - symbol:EC1.5 "AT5G64720" species:370...    85  0.00085   1


>TAIR|locus:2136293 [details] [associations]
            symbol:EC1.4 "AT4G39340" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM;IDA] [GO:0009567 "double
            fertilization forming a zygote and endosperm" evidence=IGI]
            [GO:0031982 "vesicle" evidence=IDA] [GO:0080155 "regulation of
            double fertilization forming a zygote and endosperm" evidence=IMP]
            [GO:2000008 "regulation of protein localization to cell surface"
            evidence=IMP] GO:GO:0005576 EMBL:CP002687 GenomeReviews:CT486007_GR
            EMBL:AL161595 GO:GO:0031982 GO:GO:0080155 GO:GO:2000008
            EMBL:AL050351 UniGene:At.24772 UniGene:At.75608
            HOGENOM:HOG000272692 InterPro:IPR008502 Pfam:PF05617
            ProtClustDB:CLSN2683714 EMBL:DQ446907 EMBL:DQ653255 IPI:IPI00526543
            PIR:T08582 RefSeq:NP_195644.1 UniGene:At.75461 PRIDE:Q9T039
            EnsemblPlants:AT4G39340.1 GeneID:830089 KEGG:ath:AT4G39340
            TAIR:At4g39340 eggNOG:NOG330298 InParanoid:Q9T039 OMA:DIITTNC
            PhylomeDB:Q9T039 Genevestigator:Q9T039 Uniprot:Q9T039
        Length = 127

 Score = 116 (45.9 bits), Expect = 3.8e-07, P = 3.8e-07
 Identities = 32/74 (43%), Positives = 41/74 (55%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F    +T LI+  + N T     L        ++A RL+ SGGL ECWN L E 
Sbjct:     1 MASNTTFLFSTVTLLII--LLNTTVSGRDLPAESST--NIAARLQ-SGGLMECWNALYEL 55

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    56 -KSCTNEIVLFFLN 68


>TAIR|locus:2052536 [details] [associations]
            symbol:EC1.2 "AT2G21740" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM;IDA] [GO:0009567 "double
            fertilization forming a zygote and endosperm" evidence=IGI]
            [GO:0031982 "vesicle" evidence=IDA] [GO:0080155 "regulation of
            double fertilization forming a zygote and endosperm" evidence=IMP]
            [GO:2000008 "regulation of protein localization to cell surface"
            evidence=IMP] GO:GO:0005576 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0031982 GO:GO:0080155 EMBL:AC007019 GO:GO:2000008
            HOGENOM:HOG000272692 InterPro:IPR008502 Pfam:PF05617 EMBL:DQ446544
            EMBL:DQ653011 IPI:IPI00542544 PIR:F84604 RefSeq:NP_179766.1
            UniGene:At.66228 EnsemblPlants:AT2G21740.1 GeneID:816711
            KEGG:ath:AT2G21740 TAIR:At2g21740 eggNOG:NOG293372
            InParanoid:Q9SJ24 OMA:GGGLMEC PhylomeDB:Q9SJ24
            ProtClustDB:CLSN2683714 ArrayExpress:Q9SJ24 Genevestigator:Q9SJ24
            Uniprot:Q9SJ24
        Length = 125

 Score = 111 (44.1 bits), Expect = 1.3e-06, P = 1.3e-06
 Identities = 30/74 (40%), Positives = 39/74 (52%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F    +  L++ NI+  T      + N      +A RL   GGL ECWN L E 
Sbjct:     1 MASNTSFLFATIAILLVLNISGRTLPETEDSTN------IAARLNG-GGLMECWNALYEL 53

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    54 -KSCTNEIVLFFLN 66


>TAIR|locus:2052556 [details] [associations]
            symbol:EC1.3 "AT2G21750" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005576
            "extracellular region" evidence=ISM;IDA] [GO:0009567 "double
            fertilization forming a zygote and endosperm" evidence=IGI]
            [GO:0031982 "vesicle" evidence=IDA] [GO:0080155 "regulation of
            double fertilization forming a zygote and endosperm" evidence=IMP]
            [GO:2000008 "regulation of protein localization to cell surface"
            evidence=IMP] GO:GO:0005576 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0031982 GO:GO:0080155 EMBL:AC007019 GO:GO:2000008
            HOGENOM:HOG000272692 InterPro:IPR008502 Pfam:PF05617
            ProtClustDB:CLSN2683714 EMBL:DQ446545 EMBL:DQ653012 IPI:IPI00522390
            PIR:G84604 RefSeq:NP_179767.1 UniGene:At.66229 PRIDE:Q9SJ23
            EnsemblPlants:AT2G21750.1 GeneID:816712 KEGG:ath:AT2G21750
            TAIR:At2g21750 eggNOG:NOG261385 InParanoid:Q9SJ23 OMA:CNAVDVI
            PhylomeDB:Q9SJ23 Genevestigator:Q9SJ23 Uniprot:Q9SJ23
        Length = 125

 Score = 104 (41.7 bits), Expect = 7.0e-06, P = 7.0e-06
 Identities = 27/74 (36%), Positives = 41/74 (55%)

Query:     1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEP 60
             MA    F  + +T L++ N+++        + N      +A RL   GGL +CW+ L E 
Sbjct:     1 MASNTSFLFVTVTLLLVLNVSSRALPPVADSTN------IAARL-TGGGLMQCWDALYEL 53

Query:    61 PKSCSNEIVIFFLS 74
              KSC+NEIV+FFL+
Sbjct:    54 -KSCTNEIVLFFLN 66


>TAIR|locus:2176080 [details] [associations]
            symbol:EC1.5 "AT5G64720" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005576 "extracellular region"
            evidence=IDA] [GO:0009567 "double fertilization forming a zygote
            and endosperm" evidence=IGI] [GO:0031982 "vesicle" evidence=IDA]
            [GO:0080155 "regulation of double fertilization forming a zygote
            and endosperm" evidence=IMP] [GO:2000008 "regulation of protein
            localization to cell surface" evidence=IMP] EMBL:CP002688
            GenomeReviews:BA000015_GR GO:GO:0005576 EMBL:AB025637 GO:GO:0031982
            GO:GO:0080155 GO:GO:2000008 HOGENOM:HOG000272692 InterPro:IPR008502
            Pfam:PF05617 EMBL:BT029327 IPI:IPI00528425 RefSeq:NP_201277.3
            UniGene:At.50916 DNASU:836593 EnsemblPlants:AT5G64720.1
            GeneID:836593 KEGG:ath:AT5G64720 TAIR:At5g64720 eggNOG:NOG322274
            OMA:LREYCEF PhylomeDB:Q9FGG1 ProtClustDB:CLSN2925626
            Genevestigator:Q9FGG1 Uniprot:Q9FGG1
        Length = 155

 Score = 85 (35.0 bits), Expect = 0.00085, P = 0.00085
 Identities = 18/35 (51%), Positives = 24/35 (68%)

Query:    40 LATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLS 74
             +AT    +G L +CWN  +E  KSC++EIV FFLS
Sbjct:    40 MATDHSGAGNLMDCWNAGLEL-KSCTDEIVKFFLS 73


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.325   0.136   0.432    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       93        77   0.00091  102 3  11 22  0.48    28
                                                     29  0.50    29


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  574 (61 KB)
  Total size of DFA:  109 KB (2072 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  9.73u 0.26s 9.99t   Elapsed:  00:00:01
  Total cpu time:  9.73u 0.26s 9.99t   Elapsed:  00:00:01
  Start:  Mon May 20 16:57:42 2013   End:  Mon May 20 16:57:43 2013
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the Gene Ontology

BLAST Results

Query Summary

Query Sequence

High Scoring Gene Products

Raw Blast Data
