BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 046540
         (93 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OD5|A Chain A, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
 pdb|1OD5|B Chain B, Crystal Structure Of Glycinin A3b4 Subunit Homohexamer
          Length = 492

 Score = 27.3 bits (59), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 27 NDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIV 69
          N+C  NN+    +   R+E+ GGL E WN    P   C+   V
Sbjct: 6  NECQLNNLN-ALEPDHRVESEGGLIETWNS-QHPELQCAGVTV 46


>pdb|2D5F|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5F|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|A Chain A, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|B Chain B, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|C Chain C, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|D Chain D, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|E Chain E, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
 pdb|2D5H|F Chain F, Crystal Structure Of Recombinant Soybean Proglycinin
          A3b4 Subunit, Its Comparison With Mature Glycinin A3b4
          Subunit, Responsible For Hexamer Assembly
          Length = 493

 Score = 27.3 bits (59), Expect = 2.5,   Method: Composition-based stats.
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 27 NDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIV 69
          N+C  NN+    +   R+E+ GGL E WN    P   C+   V
Sbjct: 7  NECQLNNLN-ALEPDHRVESEGGLIETWNS-QHPELQCAGVTV 47


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.136    0.432 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,961,704
Number of Sequences: 62578
Number of extensions: 54214
Number of successful extensions: 148
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 148
Number of HSP's gapped (non-prelim): 2
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 45 (21.9 bits)