Query 046540
Match_columns 93
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 13:08:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF05617 Prolamin_like: Prolam 99.0 1.9E-10 4.1E-15 71.6 1.0 40 52-92 1-41 (70)
2 PLN00213 predicted protein; Pr 98.3 1.5E-06 3.3E-11 62.8 4.8 82 1-88 1-83 (118)
3 PF07172 GRP: Glycine rich pro 96.5 0.0026 5.7E-08 43.5 2.7 28 1-29 1-28 (95)
4 PF03058 Sar8_2: Sar8.2 family 69.8 5.3 0.00012 28.2 2.8 29 1-30 1-30 (93)
5 PLN00214 putative protein; Pro 44.0 21 0.00045 26.0 2.3 26 62-89 45-71 (115)
6 PF08386 Abhydrolase_4: TAP-li 27.8 35 0.00075 22.4 1.2 18 60-77 78-96 (103)
7 PF05965 FYRC: F/Y rich C-term 23.0 15 0.00033 23.5 -1.2 38 47-84 20-62 (86)
8 PHA02888 hypothetical protein; 22.5 38 0.00082 23.9 0.6 23 58-81 2-24 (96)
9 PF13670 PepSY_2: Peptidase pr 22.4 1.4E+02 0.0031 18.7 3.2 21 28-48 22-42 (83)
10 PF14004 DUF4227: Protein of u 21.7 2.5E+02 0.0054 18.5 4.6 17 4-20 8-24 (71)
No 1
>PF05617 Prolamin_like: Prolamin-like; InterPro: IPR008502 This entry consists of several proteins of unknown function found exclusively in Arabidopsis thaliana.
Probab=98.95 E-value=1.9e-10 Score=71.59 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=37.5
Q ss_pred hhhhhhcCCCccchhhhHHHhhcch-hhccchhhhheecccC
Q 046540 52 ECWNVLMEPPKSCSNEIVIFFLSLI-ARLILALTVAALLIYH 92 (93)
Q Consensus 52 ~CW~al~el~~sCt~EIvlFFLnGe-tyLg~~CC~Ai~~i~h 92 (93)
+||+++.+. ++|.+||..+|+||+ .++|++||.+|+-++.
T Consensus 1 kc~~~~~~~-~~C~~eI~~~~~~g~~~~i~~~CC~~i~~~g~ 41 (70)
T PF05617_consen 1 KCLSSCAKS-PGCGDEIFNSFFNGNKKNIGPECCKAINKMGK 41 (70)
T ss_pred ChHHHcCCc-cchHHHHHHHHHcCCCCCCChHHHHHHHHHhH
Confidence 599999998 999999999999999 9999999999988764
No 2
>PLN00213 predicted protein; Provisional
Probab=98.26 E-value=1.5e-06 Score=62.78 Aligned_cols=82 Identities=23% Similarity=0.250 Sum_probs=55.3
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhcccccccccCccCCccHHHHhhhcCCchhhhhhhcCCCccchhhhHHHhhcchh-hc
Q 046540 1 MAPKHVFFILALTCLIMANIANATSRNDCLNNNMKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIA-RL 79 (93)
Q Consensus 1 MA~~~~fl~~~ltlli~a~ia~~~a~r~~~~~~~~~~~~La~RL~~gg~~~~CW~al~el~~sCt~EIvlFFLnGet-yL 79 (93)
|..|+++.++.+.++++...|.- ..+..+++.+-+. .++-+-.+..+||.+|+.+ +-|.-||.-=-.+|+- .+
T Consensus 1 m~iknV~~ll~v~cIvvsVna~l-pqf~~~fp~~~p~----~~~pg~pd~~kCwSSl~~v-pGCv~EI~~si~~gkf~~I 74 (118)
T PLN00213 1 MSIKNVFLLLAVLCIIVSVNAQL-PQFPAQLPFLFPF----QLIPGLPDITKCFSSVMDI-PGCIAEISQSIFTGKFGNL 74 (118)
T ss_pred CchHHHHHHHHHHHHHheeccCC-CCCCCCCCCCCCc----cCCCCCccHHHHHHHHcCC-cchHHHHHHHHHhchhccc
Confidence 78899999998888887322220 1121122211111 1121112556899999999 9999999998888988 89
Q ss_pred cchhhhhee
Q 046540 80 ILALTVAAL 88 (93)
Q Consensus 80 g~~CC~Ai~ 88 (93)
|+.||.|+.
T Consensus 75 g~aCCKAf~ 83 (118)
T PLN00213 75 GPACCKAFL 83 (118)
T ss_pred chHHHHHHH
Confidence 999999974
No 3
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=96.45 E-value=0.0026 Score=43.53 Aligned_cols=28 Identities=25% Similarity=0.377 Sum_probs=21.1
Q ss_pred CCchHHHHHHHHHHHHHHhhhhhcccccc
Q 046540 1 MAPKHVFFILALTCLIMANIANATSRNDC 29 (93)
Q Consensus 1 MA~~~~fl~~~ltlli~a~ia~~~a~r~~ 29 (93)
||||+ |||++|.|.++-+|||.+++|++
T Consensus 1 MaSK~-~llL~l~LA~lLlisSevaa~~~ 28 (95)
T PF07172_consen 1 MASKA-FLLLGLLLAALLLISSEVAAREL 28 (95)
T ss_pred CchhH-HHHHHHHHHHHHHHHhhhhhHHh
Confidence 99777 66666666666668898888888
No 4
>PF03058 Sar8_2: Sar8.2 family; InterPro: IPR004297 Members of this family are found in Solanaceae spp. plants, a taxonomic group (family) that includes pepper and tobacco plant species. Synthesis of these proteins is induced by Tobacco mosaic virus and salicylic acid []; indeed they are thought to be involved in the development of systemic acquired resistance (SAR) after an initial hypersensitive response to microbial infection [, ]. SAR is characterised by long-lasting resistance to infection by a wide range of pathogens, extending to plant tissues distant from the initial infection site [].
Probab=69.81 E-value=5.3 Score=28.19 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=20.0
Q ss_pred CCch-HHHHHHHHHHHHHHhhhhhccccccc
Q 046540 1 MAPK-HVFFILALTCLIMANIANATSRNDCL 30 (93)
Q Consensus 1 MA~~-~~fl~~~ltlli~a~ia~~~a~r~~~ 30 (93)
|++| ++|+.++|+.+++ .|++-+.+|+.+
T Consensus 1 M~~Ktnlfl~lSLailLm-IISSqv~AREms 30 (93)
T PF03058_consen 1 MVSKTNLFLCLSLAILLM-IISSQVDAREMS 30 (93)
T ss_pred CcchhhhHHHHHHHHHHH-HHhhHHHHHHHh
Confidence 8885 5888888854444 377777777664
No 5
>PLN00214 putative protein; Provisional
Probab=44.02 E-value=21 Score=26.01 Aligned_cols=26 Identities=12% Similarity=0.121 Sum_probs=17.8
Q ss_pred ccchhhhHHHhh-cchhhccchhhhheec
Q 046540 62 KSCSNEIVIFFL-SLIARLILALTVAALL 89 (93)
Q Consensus 62 ~sCt~EIvlFFL-nGetyLg~~CC~Ai~~ 89 (93)
..|..||.--++ ||.. ...||+-+.-
T Consensus 45 ~KCa~EI~a~i~~N~t~--s~~CC~~LVk 71 (115)
T PLN00214 45 PKCALDIIAVVFENGTL--IDPCCNDLVK 71 (115)
T ss_pred HhhHHHHHHHHHcCCCC--chHHHHHHHH
Confidence 448888887777 5554 7788876543
No 6
>PF08386 Abhydrolase_4: TAP-like protein; InterPro: IPR013595 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents a C-terminal domain associated with putative hydrolases and bacterial peptidases that belong to MEROPS peptidase family S33 (clan SC). They are related to a tripeptidyl aminopeptidase from Streptomyces lividans (Q54410 from SWISSPROT). A member of this family (Q6E3K7 from SWISSPROT) is thought to be involved in the C-terminal processing of propionicin F, a bacteriocidin characterised from Propionibacterium freudenreichii []. ; GO: 0008233 peptidase activity
Probab=27.79 E-value=35 Score=22.41 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=14.7
Q ss_pred CCccchhhhH-HHhhcchh
Q 046540 60 PPKSCSNEIV-IFFLSLIA 77 (93)
Q Consensus 60 l~~sCt~EIv-lFFLnGet 77 (93)
.++.|.+++| -||++|+.
T Consensus 78 ~~s~C~~~~v~~yl~~G~l 96 (103)
T PF08386_consen 78 GGSPCVDKAVDDYLLDGTL 96 (103)
T ss_pred CCChHHHHHHHHHHHcCCC
Confidence 4488999998 78888874
No 7
>PF05965 FYRC: F/Y rich C-terminus; InterPro: IPR003889 The "FY-rich" domain C-terminal region is sometimes closely juxtaposed with the N-terminal region (IPR003888 from INTERPRO), but sometimes is far distant. It is of unknown function, but occurs frequently in chromatin-associated proteins like trithorax and its homologues.; GO: 0005634 nucleus; PDB: 2WZO_A.
Probab=22.97 E-value=15 Score=23.47 Aligned_cols=38 Identities=16% Similarity=0.151 Sum_probs=20.7
Q ss_pred cCCchhhhhhhcCCCccchh-----hhHHHhhcchhhccchhh
Q 046540 47 SGGLTECWNVLMEPPKSCSN-----EIVIFFLSLIARLILALT 84 (93)
Q Consensus 47 gg~~~~CW~al~el~~sCt~-----EIvlFFLnGetyLg~~CC 84 (93)
|.+..+||..+++--+..-+ +....-++|+.++|-.=.
T Consensus 20 g~s~~~~W~~i~~~v~~~r~~~~~~~~~~~~isG~~~FGls~p 62 (86)
T PF05965_consen 20 GSSPTEAWSEILERVNEARKQSGLLKLPPNSISGPEMFGLSNP 62 (86)
T ss_dssp ESSHHHHHHHHHHHHHHHHT-------TT----HHHHHSTTSH
T ss_pred eCCHHHHHHHHHHHHHHHHhhccccccCCCCCCHhHhcCCCCH
Confidence 56778999998753122221 234567899999986533
No 8
>PHA02888 hypothetical protein; Provisional
Probab=22.54 E-value=38 Score=23.92 Aligned_cols=23 Identities=17% Similarity=0.200 Sum_probs=18.0
Q ss_pred cCCCccchhhhHHHhhcchhhccc
Q 046540 58 MEPPKSCSNEIVIFFLSLIARLIL 81 (93)
Q Consensus 58 ~el~~sCt~EIvlFFLnGetyLg~ 81 (93)
..||+||.+ |+-=-+|||-++|.
T Consensus 2 islpsscq~-iin~ving~cffgk 24 (96)
T PHA02888 2 ISLPSSCQH-IINRVINGECFFGK 24 (96)
T ss_pred ccccHHHHH-HHHHHccceeeeee
Confidence 457889976 55567999999996
No 9
>PF13670 PepSY_2: Peptidase propeptide and YPEB domain This Prosite motif covers only the active site. This is family M4 in the peptidase classification.
Probab=22.41 E-value=1.4e+02 Score=18.67 Aligned_cols=21 Identities=24% Similarity=0.183 Sum_probs=10.5
Q ss_pred cccccCccCCccHHHHhhhcC
Q 046540 28 DCLNNNMKLGYDLATRLEASG 48 (93)
Q Consensus 28 ~~~~~~~~~~~~La~RL~~gg 48 (93)
+.|.++..+...+.++|+..|
T Consensus 22 ~~p~~~~~~~~~~~~~l~~~G 42 (83)
T PF13670_consen 22 DAPPADWLSIEQAVAKLEAQG 42 (83)
T ss_pred CCCccccCCHHHHHHHHHhcC
Confidence 334333324556667776433
No 10
>PF14004 DUF4227: Protein of unknown function (DUF4227)
Probab=21.71 E-value=2.5e+02 Score=18.54 Aligned_cols=17 Identities=24% Similarity=0.260 Sum_probs=9.4
Q ss_pred hHHHHHHHHHHHHHHhh
Q 046540 4 KHVFFILALTCLIMANI 20 (93)
Q Consensus 4 ~~~fl~~~ltlli~a~i 20 (93)
|-..+|+++|+++--.+
T Consensus 8 k~~~LF~~~T~lfYy~~ 24 (71)
T PF14004_consen 8 KFFLLFTGCTLLFYYAI 24 (71)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34556666676655333
Done!