Query 046540
Match_columns 93
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 29240
Date Mon Mar 25 23:13:55 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ebo_A Ebola virus envelope gl 23.4 21 0.0007 23.3 0.4 10 78-87 47-56 (74)
2 1ebo_A Ebola virus envelope pr 16.8 36 0.0012 24.2 0.5 10 78-87 84-93 (131)
3 1utr_A Uteroglobin; clara cell 8.4 43 0.0015 21.5 -1.2 18 50-68 52-69 (96)
4 1wwh_A Nucleoporin 35, nucleop 8.0 1.5E+02 0.0051 20.2 1.3 40 34-73 6-45 (119)
5 3l32_A Phosphoprotein; antipar 7.7 1.7E+02 0.0056 17.5 1.3 23 37-59 13-35 (45)
6 1p6x_A Thymidine kinase; P-loo 7.5 1.7E+02 0.0059 22.3 1.6 22 39-60 275-304 (334)
7 1jlp_A PSI-conotoxin PIIIF; mu 7.0 95 0.0033 16.6 -0.0 6 80-85 1-6 (26)
8 1osn_A Thymidine kinase, VZV-T 6.7 1.5E+02 0.0051 22.9 0.9 23 38-60 282-312 (341)
9 4epz_A Transcription anti-term 6.4 1.9E+02 0.0064 21.2 1.3 19 50-68 88-115 (162)
10 3hug_A RNA polymerase sigma fa 6.3 2.4E+02 0.0083 16.4 1.5 42 37-78 15-56 (92)
No 1
>2ebo_A Ebola virus envelope glycoprotein; filovirus, GP2, coat protein; 1.90A {Zaire ebolavirus - mayinga} SCOP: h.3.2.1
Probab=23.39 E-value=21 Score=23.31 Aligned_cols=10 Identities=10% Similarity=-0.097 Sum_probs=8.0
Q ss_pred hccchhhhhe
Q 046540 78 RLILALTVAA 87 (93)
Q Consensus 78 yLg~~CC~Ai 87 (93)
.|||+||..+
T Consensus 47 ilgpdc~i~~ 56 (74)
T 2ebo_A 47 ILGPDCAIEP 56 (74)
T ss_dssp HHGGGGGCCC
T ss_pred ecCCccccCH
Confidence 5899999754
No 2
>1ebo_A Ebola virus envelope protein chimera consisting of A fragment of GCN4 zipper cloned...; membrane fusion subunit, viral protein; 3.00A {Ebola virus SP} SCOP: h.3.2.1
Probab=16.77 E-value=36 Score=24.18 Aligned_cols=10 Identities=10% Similarity=-0.124 Sum_probs=7.9
Q ss_pred hccchhhhhe
Q 046540 78 RLILALTVAA 87 (93)
Q Consensus 78 yLg~~CC~Ai 87 (93)
.|||+||..+
T Consensus 84 iLGPdCcIep 93 (131)
T 1ebo_A 84 ILGPDCRIEP 93 (131)
T ss_dssp HHGGGGGCCC
T ss_pred ecCCccccCH
Confidence 5899999653
No 3
>1utr_A Uteroglobin; clara cell 17 kDa protein (CC10), phospholipase A2 inhibitor, clara cell phospholipid-binding protein, progesterone binding; HET: PCB; NMR {Rattus norvegicus} SCOP: a.101.1.1
Probab=8.38 E-value=43 Score=21.51 Aligned_cols=18 Identities=11% Similarity=0.049 Sum_probs=13.0
Q ss_pred chhhhhhhcCCCccchhhh
Q 046540 50 LTECWNVLMEPPKSCSNEI 68 (93)
Q Consensus 50 ~~~CW~al~el~~sCt~EI 68 (93)
..+==++..|+ |+|++++
T Consensus 52 ~~~a~~A~~~l-K~Cvd~l 69 (96)
T 1utr_A 52 ASDLQNAGTQL-KRLVDTL 69 (96)
T ss_dssp CHHHHHHHHHH-HHHHTTS
T ss_pred CHHHHHHHHHH-HHHHHhC
Confidence 33455678888 9998875
No 4
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=8.02 E-value=1.5e+02 Score=20.16 Aligned_cols=40 Identities=18% Similarity=0.325 Sum_probs=22.8
Q ss_pred ccCCccHHHHhhhcCCchhhhhhhcCCCccchhhhHHHhh
Q 046540 34 MKLGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFL 73 (93)
Q Consensus 34 ~~~~~~La~RL~~gg~~~~CW~al~el~~sCt~EIvlFFL 73 (93)
++|..+=-+.|..+....++|=.+...|.+.++.|+-.|-
T Consensus 6 ~~pf~~~~~~l~~~~~~~~~wVtVFGFp~~~~~~VL~~F~ 45 (119)
T 1wwh_A 6 SGPFYTQGDSLTSEDHLDDTWVTVFGFPQASASYILLQFA 45 (119)
T ss_dssp ---------------CGGGGEEEEECCCGGGHHHHHHHHH
T ss_pred cCcceeCCcccCCCCCCCCCEEEEECCCHHHHHHHHHHHH
Confidence 3445555566665566679999999999999999999984
No 5
>3l32_A Phosphoprotein; antiparallel alpha-helices, viral protein, dimerisation domain; 1.50A {Rabies virus}
Probab=7.70 E-value=1.7e+02 Score=17.49 Aligned_cols=23 Identities=13% Similarity=0.462 Sum_probs=18.2
Q ss_pred CccHHHHhhhcCCchhhhhhhcC
Q 046540 37 GYDLATRLEASGGLTECWNVLME 59 (93)
Q Consensus 37 ~~~La~RL~~gg~~~~CW~al~e 59 (93)
+.-+..|++.|++.-.=|..+.|
T Consensus 13 G~qiVrkmKtGe~FfKiWS~~~e 35 (45)
T 3l32_A 13 GVQIVRQMRSGERFLKIWSQTVE 35 (45)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHccccHHHHHHHHHH
Confidence 44568899999999999987654
No 6
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=7.52 E-value=1.7e+02 Score=22.32 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=15.9
Q ss_pred cHHHHhh--------hcCCchhhhhhhcCC
Q 046540 39 DLATRLE--------ASGGLTECWNVLMEP 60 (93)
Q Consensus 39 ~La~RL~--------~gg~~~~CW~al~el 60 (93)
.|+.||+ -++.+..||..++++
T Consensus 275 ~l~~~l~~~~~~~~d~~~~~~~c~~~~~~~ 304 (334)
T 1p6x_A 275 ALMLKLRNLNVFSADLSGTPRQCAAVVESL 304 (334)
T ss_dssp HHHHHHTTEEEEEEECCSCHHHHHHHHHTT
T ss_pred HHHHHhccCeEEEEeCCCCHHHHHHHHHHh
Confidence 4556665 345777899999988
No 7
>1jlp_A PSI-conotoxin PIIIF; multiple disulfide bonds, amidated C-terminus; HET: HYP; NMR {Synthetic} SCOP: j.30.1.4
Probab=6.98 E-value=95 Score=16.57 Aligned_cols=6 Identities=0% Similarity=-0.369 Sum_probs=3.8
Q ss_pred cchhhh
Q 046540 80 ILALTV 85 (93)
Q Consensus 80 g~~CC~ 85 (93)
||.||.
T Consensus 1 gppccl 6 (26)
T 1jlp_A 1 GPPCCL 6 (26)
T ss_dssp CCCSCS
T ss_pred CCCcee
Confidence 566774
No 8
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=6.69 E-value=1.5e+02 Score=22.86 Aligned_cols=23 Identities=13% Similarity=-0.055 Sum_probs=16.8
Q ss_pred ccHHHHhh--------hcCCchhhhhhhcCC
Q 046540 38 YDLATRLE--------ASGGLTECWNVLMEP 60 (93)
Q Consensus 38 ~~La~RL~--------~gg~~~~CW~al~el 60 (93)
..|+.||+ -++...+||..++++
T Consensus 282 ~~l~~~l~~~~~~~~d~~~~~~~c~~~~~~~ 312 (341)
T 1osn_A 282 ETLSNCLRSMSPFVLSLEQTPQHAAQELKTL 312 (341)
T ss_dssp HHHHHHHHHCEEEEEECSSCHHHHHHHHHHH
T ss_pred HHHHHHhhcCeEEEEeCCCCHHHHHHHHHHh
Confidence 35677775 345777899999887
No 9
>4epz_A Transcription anti-terminator antagonist UPXZ; transcription regulation, antagonist of transcription anti- termination; HET: MSE; 1.68A {Bacteroides uniformis atcc 8492}
Probab=6.39 E-value=1.9e+02 Score=21.21 Aligned_cols=19 Identities=26% Similarity=0.431 Sum_probs=15.0
Q ss_pred chhhhhhhcCCCcc---------chhhh
Q 046540 50 LTECWNVLMEPPKS---------CSNEI 68 (93)
Q Consensus 50 ~~~CW~al~el~~s---------Ct~EI 68 (93)
+.-||+.|-.||-| |+||+
T Consensus 88 LdRs~~vL~~Lp~SLLK~rLLt~CygEv 115 (162)
T 4epz_A 88 LDRIYNIMSQLPASLLKMRLLTWGYSET 115 (162)
T ss_dssp HHHHHTTGGGSCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHHhhh
Confidence 34699999999876 77775
No 10
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=6.26 E-value=2.4e+02 Score=16.45 Aligned_cols=42 Identities=7% Similarity=-0.103 Sum_probs=23.7
Q ss_pred CccHHHHhhhcCCchhhhhhhcCCCccchhhhHHHhhcchhh
Q 046540 37 GYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIAR 78 (93)
Q Consensus 37 ~~~La~RL~~gg~~~~CW~al~el~~sCt~EIvlFFLnGety 78 (93)
..+-...++.......=+.++..|+...-.=+.+.|+.|.+|
T Consensus 15 ~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~~g~s~ 56 (92)
T 3hug_A 15 EQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYYRGWST 56 (92)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHTSCCCH
T ss_pred CCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCH
Confidence 444455554333344556677777444444444558888765
Done!