Query 046540
Match_columns 93
No_of_seqs 38 out of 40
Neff 2.8
Searched_HMMs 13730
Date Mon Mar 25 23:14:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046540.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046540hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1ffva2 d.15.4.2 (A:3-81) Carb 11.5 8.7 0.00064 23.0 -2.1 11 68-78 3-13 (79)
2 d1wwha1 d.58.7.1 (A:169-249) N 10.4 49 0.0035 18.6 1.2 22 51-72 3-24 (81)
3 d1mida_ a.52.1.1 (A:) Plant no 10.0 27 0.002 20.5 -0.1 31 53-89 3-33 (91)
4 d2vzsa5 c.1.8.3 (A:336-674) Ex 9.7 19 0.0014 23.3 -1.0 13 70-82 13-25 (339)
5 d1p6xa_ c.37.1.1 (A:) Thymidin 9.2 62 0.0045 22.9 1.6 22 39-60 274-303 (333)
6 d2je8a5 c.1.8.3 (A:331-678) Fi 9.1 21 0.0015 22.8 -1.0 12 71-82 18-29 (348)
7 d2gdwa1 a.28.1.2 (A:8-83) Pept 7.7 68 0.005 17.6 1.0 36 36-78 4-39 (76)
8 d1k8ib2 d.19.1.1 (B:1-94) Clas 7.1 54 0.0039 20.6 0.4 21 37-59 64-91 (94)
9 d1t3qa2 d.15.4.2 (A:7-87) Quin 6.8 22 0.0016 21.1 -1.6 9 70-78 7-15 (81)
10 d1u5tb2 a.4.5.54 (B:490-564) V 6.7 36 0.0026 20.7 -0.6 27 41-68 26-54 (75)
No 1
>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}
Probab=11.45 E-value=8.7 Score=22.97 Aligned_cols=11 Identities=18% Similarity=0.111 Sum_probs=8.2
Q ss_pred hHHHhhcchhh
Q 046540 68 IVIFFLSLIAR 78 (93)
Q Consensus 68 IvlFFLnGety 78 (93)
+|.|.|||+.+
T Consensus 3 ~i~~~vNG~~~ 13 (79)
T d1ffva2 3 IITVNVNGKAQ 13 (79)
T ss_dssp EEEEEETTEEE
T ss_pred EEEEEECCEEE
Confidence 46788888865
No 2
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=10.40 E-value=49 Score=18.59 Aligned_cols=22 Identities=18% Similarity=0.540 Sum_probs=18.6
Q ss_pred hhhhhhhcCCCccchhhhHHHh
Q 046540 51 TECWNVLMEPPKSCSNEIVIFF 72 (93)
Q Consensus 51 ~~CW~al~el~~sCt~EIvlFF 72 (93)
.+||=.+..+|.+.++|+.-.|
T Consensus 3 ~~~wV~V~G~p~~~~~~il~~F 24 (81)
T d1wwha1 3 DDTWVTVFGFPQASASYILLQF 24 (81)
T ss_dssp GGGEEEEECCCGGGHHHHHHHH
T ss_pred cccEEEEECCChHHHHHHHHHH
Confidence 4789999999999999988766
No 3
>d1mida_ a.52.1.1 (A:) Plant non-specific lipid-transfer protein (ns-LTP, ns-LTP1) {Barley (Hordeum vulgare) [TaxId: 4513]}
Probab=9.96 E-value=27 Score=20.55 Aligned_cols=31 Identities=13% Similarity=-0.022 Sum_probs=20.1
Q ss_pred hhhhhcCCCccchhhhHHHhhcchhhccchhhhheec
Q 046540 53 CWNVLMEPPKSCSNEIVIFFLSLIARLILALTVAALL 89 (93)
Q Consensus 53 CW~al~el~~sCt~EIvlFFLnGetyLg~~CC~Ai~~ 89 (93)
|=+.+..+ ..|.+ ||.|..--.+.||.+++-
T Consensus 3 C~~v~~~l-~pCl~-----Yl~g~~~P~~~CC~gv~~ 33 (91)
T d1mida_ 3 CGQVDSKM-KPCLT-----YVQGGPGPSGECCNGVRD 33 (91)
T ss_dssp HHHHHHHH-GGGHH-----HHTTCSCCCHHHHHHHHH
T ss_pred HHHHHHHH-HhhHH-----HHcCCCCCCcchhhhHHH
Confidence 33444444 55543 677777788999988753
No 4
>d2vzsa5 c.1.8.3 (A:336-674) Exochitosanase CsxA {Amycolatopsis orientalis [TaxId: 31958]}
Probab=9.65 E-value=19 Score=23.27 Aligned_cols=13 Identities=15% Similarity=0.028 Sum_probs=9.6
Q ss_pred HHhhcchhhccch
Q 046540 70 IFFLSLIARLILA 82 (93)
Q Consensus 70 lFFLnGetyLg~~ 82 (93)
.|+|||+-++-++
T Consensus 13 ~f~vNG~~~~~rG 25 (339)
T d2vzsa5 13 QYSVNGKPLLIRG 25 (339)
T ss_dssp EEEETTEEECEEE
T ss_pred EEEECCEEEEEec
Confidence 3789999886544
No 5
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]}
Probab=9.20 E-value=62 Score=22.91 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=16.5
Q ss_pred cHHHHhh--------hcCCchhhhhhhcCC
Q 046540 39 DLATRLE--------ASGGLTECWNVLMEP 60 (93)
Q Consensus 39 ~La~RL~--------~gg~~~~CW~al~el 60 (93)
.|+.||+ -++...+||..++++
T Consensus 274 ~l~~~l~~~~~~~ld~~~~~~~c~~~~~~~ 303 (333)
T d1p6xa_ 274 ALMLKLRNLNVFSADLSGTPRQCAAVVESL 303 (333)
T ss_dssp HHHHHHTTEEEEEEECCSCHHHHHHHHHTT
T ss_pred HHHHHHhhCeEEEEeCCCCHHHHHHHHHHh
Confidence 4677876 345667999999887
No 6
>d2je8a5 c.1.8.3 (A:331-678) Five-domain beta-mannosidase, domain 3 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=9.11 E-value=21 Score=22.79 Aligned_cols=12 Identities=17% Similarity=0.102 Sum_probs=10.0
Q ss_pred Hhhcchhhccch
Q 046540 71 FFLSLIARLILA 82 (93)
Q Consensus 71 FFLnGetyLg~~ 82 (93)
|+||||-++-++
T Consensus 18 f~lNG~p~~lrG 29 (348)
T d2je8a5 18 FEVNGIPMFAKG 29 (348)
T ss_dssp EEETTEEECEEE
T ss_pred EEECCEEEEEee
Confidence 899999887665
No 7
>d2gdwa1 a.28.1.2 (A:8-83) Peptidyl carrier protein (PCP), thioester domain {Bacillus brevis [TaxId: 1393]}
Probab=7.67 E-value=68 Score=17.57 Aligned_cols=36 Identities=11% Similarity=0.110 Sum_probs=23.8
Q ss_pred CCccHHHHhhhcCCchhhhhhhcCCCccchhhhHHHhhcchhh
Q 046540 36 LGYDLATRLEASGGLTECWNVLMEPPKSCSNEIVIFFLSLIAR 78 (93)
Q Consensus 36 ~~~~La~RL~~gg~~~~CW~al~el~~sCt~EIvlFFLnGety 78 (93)
|.++++++|. +.|..++.+ ....-+--.|-+.|-+-
T Consensus 4 P~~~~E~~l~------~i~~~vL~~-~~i~~~~~f~~lG~dSl 39 (76)
T d2gdwa1 4 PTNAVESKLA------EIWERVLGV-SGIGILDNFFQIGGHSL 39 (76)
T ss_dssp CCSHHHHHHH------HHHHHHTTS-SCCCTTTTSSTTTCTTH
T ss_pred cCCHHHHHHH------HHHHHHcCC-CCCCCCCCHHHcCCChH
Confidence 5677888876 599999988 45555545555555443
No 8
>d1k8ib2 d.19.1.1 (B:1-94) Class II MHC beta chain, N-terminal domain {Mouse (Mus musculus), H2-DM [TaxId: 10090]}
Probab=7.10 E-value=54 Score=20.59 Aligned_cols=21 Identities=43% Similarity=0.923 Sum_probs=14.8
Q ss_pred CccHHHHhhhcCCchhh-------hhhhcC
Q 046540 37 GYDLATRLEASGGLTEC-------WNVLME 59 (93)
Q Consensus 37 ~~~La~RL~~gg~~~~C-------W~al~e 59 (93)
..+|..||+. +.++| |+++++
T Consensus 64 ~~~lvqRl~~--glq~C~~htq~FW~~lt~ 91 (94)
T d1k8ib2 64 QESLIHRLQN--GLQDCATHTQPFWDVLTH 91 (94)
T ss_dssp CHHHHHHHHH--THHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHh--hHHHHHHHHHHHHHHHhh
Confidence 5688999974 45555 888775
No 9
>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}
Probab=6.79 E-value=22 Score=21.06 Aligned_cols=9 Identities=11% Similarity=-0.149 Sum_probs=6.5
Q ss_pred HHhhcchhh
Q 046540 70 IFFLSLIAR 78 (93)
Q Consensus 70 lFFLnGety 78 (93)
.|.|||+.|
T Consensus 7 ~~~vNG~~~ 15 (81)
T d1t3qa2 7 SATINGKPR 15 (81)
T ss_dssp EEEETTEEE
T ss_pred EEEECCEEE
Confidence 577888764
No 10
>d1u5tb2 a.4.5.54 (B:490-564) Vacuolar protein sorting-associated protein VPS36 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=6.75 E-value=36 Score=20.72 Aligned_cols=27 Identities=30% Similarity=0.525 Sum_probs=19.0
Q ss_pred HHHhhhcCCchhhhh--hhcCCCccchhhh
Q 046540 41 ATRLEASGGLTECWN--VLMEPPKSCSNEI 68 (93)
Q Consensus 41 a~RL~~gg~~~~CW~--al~el~~sCt~EI 68 (93)
...| +..+..+||. .++|+-|.|.+|=
T Consensus 26 T~~l-n~~~~~nnW~iGvi~EVlqncv~eG 54 (75)
T d1u5tb2 26 TQIL-SSNNSKSNWTLGILMEVLQNCVDEG 54 (75)
T ss_dssp HHHH-HTSCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHH-cccCCcccchHHHHHHHHHHHHhcc
Confidence 3444 3466678994 6788879998873
Done!