BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>046541
MPLQRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQ
KAKIQIVLGKAEKLEKAVVATTAPKETSDTDMKA

High Scoring Gene Products

Symbol, full name Information P value
DAN1
AT3G04620
protein from Arabidopsis thaliana 7.5e-18
AT1G29250 protein from Arabidopsis thaliana 2.0e-17
AT2G34160 protein from Arabidopsis thaliana 3.2e-17

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  046541
        (94 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2084873 - symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ...   217  7.5e-18   1
TAIR|locus:2029949 - symbol:AT1G29250 species:3702 "Arabi...   213  2.0e-17   1
TAIR|locus:2055516 - symbol:AT2G34160 species:3702 "Arabi...   211  3.2e-17   1


>TAIR|locus:2084873 [details] [associations]
            symbol:DAN1 "D NUCLDUO1-ACTIVATEEIC ACID BINDING PROTEIN
            1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
            binding" evidence=IEA] [GO:0048235 "pollen sperm cell
            differentiation" evidence=IEP] [GO:0006302 "double-strand break
            repair" evidence=RCA] [GO:0010332 "response to gamma radiation"
            evidence=RCA] InterPro:IPR002775 Pfam:PF01918 EMBL:CP002686
            GenomeReviews:BA000014_GR GO:GO:0003676 EMBL:AC011437 GO:GO:0048235
            HOGENOM:HOG000237559 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:BT010655 EMBL:BT010971 IPI:IPI00522733 RefSeq:NP_187113.1
            UniGene:At.40804 ProteinModelPortal:Q9SR12 SMR:Q9SR12 IntAct:Q9SR12
            PaxDb:Q9SR12 PRIDE:Q9SR12 EnsemblPlants:AT3G04620.1 GeneID:819620
            KEGG:ath:AT3G04620 TAIR:At3g04620 eggNOG:NOG319557
            InParanoid:Q9SR12 OMA:MAMEVAT PhylomeDB:Q9SR12
            ProtClustDB:CLSN2914699 Genevestigator:Q9SR12 Uniprot:Q9SR12
        Length = 164

 Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
 Identities = 46/94 (48%), Positives = 67/94 (71%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RYI+Q+N++EL+ALGMAI TVVTI+E LK +GLA+  +V  STV  K + +G+  QKAK
Sbjct:    57 KRYIQQHNEVELSALGMAITTVVTISEILKNNGLATEKKVLTSTVGMKDETKGKMVQKAK 116

Query:    64 IQIVLGKAEKLEKAVVATT---APKETSDTDMKA 94
             I+IVLGK++K +  V   T    P+E +  + +A
Sbjct:   117 IEIVLGKSDKFDSLVPPVTNGKTPEEEASAETEA 150


>TAIR|locus:2029949 [details] [associations]
            symbol:AT1G29250 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM;IDA] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005886 "plasma membrane" evidence=IDA]
            [GO:0005829 "cytosol" evidence=IDA] InterPro:IPR002775 Pfam:PF01918
            EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886
            GO:GO:0005634 GO:GO:0003676 EMBL:AC021043 HOGENOM:HOG000237559
            ProtClustDB:CLSN2688072 InterPro:IPR014560 PIRSF:PIRSF030333
            EMBL:AY052259 EMBL:AY060517 EMBL:AY085788 IPI:IPI00533218
            PIR:A86415 RefSeq:NP_564325.1 UniGene:At.15801
            ProteinModelPortal:Q9LP53 SMR:Q9LP53 STRING:Q9LP53 PRIDE:Q9LP53
            EnsemblPlants:AT1G29250.1 GeneID:839799 KEGG:ath:AT1G29250
            TAIR:At1g29250 InParanoid:Q9LP53 OMA:MEEITEG PhylomeDB:Q9LP53
            Genevestigator:Q9LP53 Uniprot:Q9LP53
        Length = 130

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/86 (50%), Positives = 60/86 (69%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RY++QY D+EL+ALGMAI TVVT+AE LK +G A   ++  STV+ K D  GR  QKAK
Sbjct:    40 KRYMQQYTDVELSALGMAIATVVTVAEILKNNGFAVEKKIMTSTVDIKDDSRGRPVQKAK 99

Query:    64 IQIVLGKAEKLEKAVVATTAPKETSD 89
             I+I L K+EK ++ + A    KE ++
Sbjct:   100 IEITLAKSEKFDELMAAANEEKEAAE 125


>TAIR|locus:2055516 [details] [associations]
            symbol:AT2G34160 species:3702 "Arabidopsis thaliana"
            [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005634
            "nucleus" evidence=ISM] [GO:0008150 "biological_process"
            evidence=ND] [GO:0005829 "cytosol" evidence=IDA] [GO:0009062 "fatty
            acid catabolic process" evidence=RCA] InterPro:IPR002775
            Pfam:PF01918 GO:GO:0005829 EMBL:CP002685 GenomeReviews:CT485783_GR
            GO:GO:0003676 EMBL:AC002341 EMBL:AY084411 EMBL:AK117501
            IPI:IPI00536086 PIR:B84753 RefSeq:NP_565781.1 UniGene:At.37844
            PDB:1VM0 PDB:2Q3V PDBsum:1VM0 PDBsum:2Q3V ProteinModelPortal:O22969
            SMR:O22969 STRING:O22969 PaxDb:O22969 PRIDE:O22969 DNASU:817977
            EnsemblPlants:AT2G34160.1 GeneID:817977 KEGG:ath:AT2G34160
            TAIR:At2g34160 eggNOG:NOG76241 HOGENOM:HOG000237559
            InParanoid:O22969 OMA:MEEITDG PhylomeDB:O22969
            ProtClustDB:CLSN2688072 EvolutionaryTrace:O22969
            Genevestigator:O22969 GermOnline:AT2G34160 InterPro:IPR014560
            PIRSF:PIRSF030333 Uniprot:O22969
        Length = 130

 Score = 211 (79.3 bits), Expect = 3.2e-17, P = 3.2e-17
 Identities = 43/90 (47%), Positives = 62/90 (68%)

Query:     4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
             +RY++QYND+EL+ALGMAI TVVT+ E LK +G A   ++  STV+ K D  GR  QKAK
Sbjct:    40 KRYMQQYNDVELSALGMAIATVVTVTEILKNNGFAVEKKIMTSTVDIKDDARGRPVQKAK 99

Query:    64 IQIVLGKAEKLEKAVVATTAPKETSDTDMK 93
             I+I L K+EK ++ + A    KE ++  ++
Sbjct:   100 IEITLVKSEKFDELMAAANEEKEDAEAQVQ 129


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.312   0.128   0.330    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       94        94   0.00091  102 3  10 23  0.39    30
                                                     29  0.42    31


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  502 (53 KB)
  Total size of DFA:  108 KB (2075 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.71u 0.07s 13.78t   Elapsed:  00:00:03
  Total cpu time:  13.71u 0.07s 13.78t   Elapsed:  00:00:03
  Start:  Mon May 20 16:58:08 2013   End:  Mon May 20 16:58:11 2013

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