BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046541
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1VM0|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g34160
pdb|1VM0|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At2g34160
pdb|2Q3V|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g34160
pdb|2Q3V|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Gene Product From Arabidopsis Thaliana At2g34160
Length = 130
Score = 79.3 bits (194), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 59/90 (65%)
Query: 4 QRYIKQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAK 63
+RY +QYND+EL+ALG AI TVVT+ E LK +G A ++ S V+ K D GR QKAK
Sbjct: 40 KRYXQQYNDVELSALGXAIATVVTVTEILKNNGFAVEKKIXTSIVDIKDDARGRPVQKAK 99
Query: 64 IQIVLGKAEKLEKAVVATTAPKETSDTDMK 93
I+I L K+EK ++ A KE ++T ++
Sbjct: 100 IEITLVKSEKFDELXAAANEEKEDAETQVQ 129
>pdb|4H6Q|A Chain A, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6Q|C Chain C, Structure Of Oxidized Deinococcus Radiodurans Proline
Dehydrogenase Complexed With L-Tetrahydrofuroic Acid
pdb|4H6R|A Chain A, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
pdb|4H6R|C Chain C, Structure Of Reduced Deinococcus Radiodurans Proline
Dehydrogenase
Length = 312
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 8 KQYNDIELTALGMAIPTVVTIAEALKRDGLASNIEV 43
K +N E G +I + + +AL+RDG+A N+++
Sbjct: 28 KMWNLAERFVAGESIESAIQAVQALERDGIAGNLDL 63
Score = 25.0 bits (53), Expect = 9.9, Method: Composition-based stats.
Identities = 12/49 (24%), Positives = 25/49 (51%)
Query: 25 VVTIAEALKRDGLASNIEVKISTVNSKKDDEGRFFQKAKIQIVLGKAEK 73
V+ + EA G+ + +K+S+V KD+ G + ++ KA++
Sbjct: 81 VIKLIEAAHAAGIKPYVSIKLSSVGQGKDENGEDLGLTNARRIIAKAKE 129
>pdb|4G37|A Chain A, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
pdb|4G37|B Chain B, Structure Of Cross-Linked Firefly Luciferase In Second
Catalytic Conformation
Length = 555
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 18/25 (72%)
Query: 26 VTIAEALKRDGLASNIEVKISTVNS 50
V +AEA+KR GL +N + +S+ NS
Sbjct: 66 VRLAEAMKRYGLNTNHRIVVSSENS 90
>pdb|3MJF|A Chain A, Phosphoribosylamine-Glycine Ligase From Yersinia Pestis
Length = 431
Score = 25.8 bits (55), Expect = 6.8, Method: Composition-based stats.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 9 QYNDIELTALGMAIPTVVTIAEALKRDGLA 38
Q +DI LT +G P V+ + +A + GLA
Sbjct: 64 QSHDIGLTIVGPEAPLVIGVVDAFRAAGLA 93
>pdb|1GH0|A Chain A, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|C Chain C, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|E Chain E, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|G Chain G, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|I Chain I, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|K Chain K, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|M Chain M, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|O Chain O, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|Q Chain Q, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|S Chain S, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|U Chain U, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|1GH0|W Chain W, Crystal Structure Of C-Phycocyanin From Spirulina
Platensis
pdb|2UUM|A Chain A, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|C Chain C, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|E Chain E, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|G Chain G, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|I Chain I, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|K Chain K, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|M Chain M, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|O Chain O, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|Q Chain Q, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|S Chain S, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|U Chain U, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUM|W Chain W, Crystal Structure Of C-phycocyanin From Phormidium,
Lyngbya Spp. (marine) And Spirulina Sp. (fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 25.4 bits (54), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 11/41 (26%), Positives = 20/41 (48%)
Query: 50 SKKDDEGRFFQKAKIQIVLGKAEKLEKAVVATTAPKETSDT 90
S D +GRF +IQ+ G+ + + + A A +D+
Sbjct: 10 SVADSQGRFLSSTEIQVAFGRFRQAKAGLEAAKALTSKADS 50
>pdb|2UUL|A Chain A, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|E Chain E, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|G Chain G, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|I Chain I, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|K Chain K, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|M Chain M, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|O Chain O, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|Q Chain Q, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|S Chain S, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|U Chain U, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUL|W Chain W, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 SKKDDEGRFFQKAKIQIVLGK 70
S D +GRF +IQ+ G+
Sbjct: 10 STADSQGRFLSSTEIQVAFGR 30
>pdb|2UUN|A Chain A, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|C Chain C, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|E Chain E, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|G Chain G, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|I Chain I, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|K Chain K, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|M Chain M, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|O Chain O, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|Q Chain Q, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|S Chain S, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|U Chain U, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers.
pdb|2UUN|W Chain W, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 25.4 bits (54), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 SKKDDEGRFFQKAKIQIVLGK 70
S D +GRF +IQ+ G+
Sbjct: 10 STADSQGRFLSSTEIQVAFGR 30
>pdb|2UUL|C Chain C, Crystal Structure Of C-Phycocyanin From Phormidium,
Lyngbya Spp. (Marine) And Spirulina Sp. (Fresh Water)
Shows Two Different Ways Of Energy Transfer Between Two
Hexamers
Length = 162
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 50 SKKDDEGRFFQKAKIQIVLGK 70
S D +GRF +IQ+ G+
Sbjct: 10 STADSQGRFLSSTEIQVAFGR 30
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.312 0.128 0.330
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,237,018
Number of Sequences: 62578
Number of extensions: 68459
Number of successful extensions: 196
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 186
Number of HSP's gapped (non-prelim): 18
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)