BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046543
(428 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N7Z|A Chain A, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|B Chain B, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|C Chain C, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|D Chain D, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|E Chain E, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
pdb|3N7Z|F Chain F, Crystal Structure Of Acetyltransferase From Bacillus
Anthrac
Length = 388
Score = 29.6 bits (65), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 9/49 (18%)
Query: 218 EVRNIKHILDLLRHSLVLPLEKGYKCS---------YRQGGWENCPSVM 257
E R ++ +LL+HSL + GY S YR+ GWE C +++
Sbjct: 87 EYRRSGYVKELLQHSLQTXKKDGYTVSXLHPFAVSFYRKYGWELCANLL 135
>pdb|3KRE|A Chain A, Crystal Structure Of
Phosphoribosylaminoimidazole-succinocarboxamide Synthase
From Ehrlichia Chaffeensis At 1.8a Resolution
Length = 263
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 24/117 (20%), Positives = 51/117 (43%), Gaps = 3/117 (2%)
Query: 275 LDIKFRSNGALEMPPLIIHKTTETLFRNLISFEQCCPNYEPIVTSYANLMASVIHNKEDV 334
L+ + + G++E I + +F L E +++ +T++ N A++IH K +
Sbjct: 12 LEAQTQGPGSMENKEKIYEGKAKIIFATLNPLE-VIQHFKDEITAFNNKKAAIIHEKGIL 70
Query: 335 ELLSEYLLIENCLNPGDVTHFFKILYNDAHLTNFYYQALLQEV--KMYCGHWSSRLR 389
L++ ++ G THF +L L ++ V + G++S R +
Sbjct: 71 NNYISSFLMKKLIDKGIKTHFISLLNQREQLVKKITIIPIEVVIRNLAAGNFSKRFQ 127
>pdb|3SPD|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPD|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna
pdb|3SPL|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|C Chain C, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
pdb|3SPL|D Chain D, Crystal Structure Of Aprataxin Ortholog Hnt3 In Complex
With Dna And Amp
Length = 204
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 42 FRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHL 89
FR N YI S+ + D+ + L + M K LL +RDPHL
Sbjct: 6 FRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHL 53
>pdb|3SP4|A Chain A, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
pdb|3SP4|B Chain B, Crystal Structure Of Aprataxin Ortholog Hnt3 From
Schizosaccharomyces Pombe
Length = 204
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 42 FRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHL 89
FR N YI S+ + D+ + L + M K LL +RDPHL
Sbjct: 6 FRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHL 53
>pdb|3SZQ|A Chain A, Structure Of An S. Pombe AptxDNAAMPZN COMPLEX
Length = 206
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 23/48 (47%)
Query: 42 FRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHL 89
FR N YI S+ + D+ + L + M K LL +RDPHL
Sbjct: 8 FRDNLKVYIESPESYKNVIYYDDDVVLVRDMFPKSKMHLLLMTRDPHL 55
>pdb|3KVE|A Chain A, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|B Chain B, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|C Chain C, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
pdb|3KVE|D Chain D, Structure Of Native L-Amino Acid Oxidase From Vipera
Ammodytes Ammodytes: Stabilization Of The Quaternary
Structure By Divalent Ions And Structural Changes In The
Dynamic Active Site
Length = 486
Score = 28.1 bits (61), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 326 SVIHNKEDVELLSEYLLIENCLNPGDVTHFFKILYNDAHLTNFYYQALLQEVK 378
S I NK D EYL+ E L+PG V +L D+ YY + ++ +K
Sbjct: 174 SYILNKYDTYSTKEYLIKEGNLSPGAVDMIGDLLNEDSG----YYVSFIESLK 222
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.138 0.425
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,358,793
Number of Sequences: 62578
Number of extensions: 506476
Number of successful extensions: 879
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 875
Number of HSP's gapped (non-prelim): 8
length of query: 428
length of database: 14,973,337
effective HSP length: 102
effective length of query: 326
effective length of database: 8,590,381
effective search space: 2800464206
effective search space used: 2800464206
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (25.0 bits)