BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046543
(428 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SD53|Y3720_ARATH UPF0481 protein At3g47200 OS=Arabidopsis thaliana GN=At3g47200 PE=1
SV=1
Length = 476
Score = 159 bits (402), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 115/411 (27%), Positives = 199/411 (48%), Gaps = 31/411 (7%)
Query: 34 IFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHLKWRE 93
IF+ P+ N AY P+ S GP+H+ ++ L++ Q K + +Q L ++ ++
Sbjct: 48 IFRVPESFVALNPKAYKPKVVSIGPYHYGEKHLQMIQQHKPRLLQLFLDEAKKKDVEENV 107
Query: 94 IVDAVAPLKDHARLCYAGSIDLDDHEFIEVLVLDGCFIIELFRKDSGIFPKQPDDPTFAM 153
+V AV L+D R Y+ + H+ + ++VLDGCFI+ +F SG + +DP F++
Sbjct: 108 LVKAVVDLEDKIRKSYSEELK-TGHDLMFMMVLDGCFILMVFLIMSGNI-ELSEDPIFSI 165
Query: 154 SCFLEYLNHDLILLENQIPWLVLERLFSLTKASDSERESLITLTLEYFANIFSSRKPETK 213
L + DL+LLENQ+P+ VL+ L+ +K S L + +F N K +
Sbjct: 166 PWLLSSIQSDLLLLENQVPFFVLQTLYVGSKIGVS--SDLNRIAFHFFKNPID--KEGSY 221
Query: 214 PEQFEVRNIKHILDLLRHSLVLPLEKGYKCS-------YRQGGWENCPSV---------- 256
E+ KH+LDL+R + + + K S +G N PSV
Sbjct: 222 WEKHRNYKAKHLLDLIRETFLPNTSESDKASSPHVQVQLHEGKSGNVPSVDSKAVPLILS 281
Query: 257 ---MKMQQSGIKLQRVNSASILDIKFRSNGALEMPPLIIHKTTETLFRNLISFEQCCPNY 313
+++Q +L+R SIL+++ + N L++P L + F N ++FEQ +
Sbjct: 282 AKRLRLQGIKFRLRRSKEDSILNVRLKKN-KLQIPQLRFDGFISSFFLNCVAFEQFYTDS 340
Query: 314 EPIVTSYANLMASVIHNKEDVELL-SEYLLIENCLNPGD-VTHFFKILYNDA--HLTNFY 369
+T+Y M +++N+EDV L ++ L+IEN + V+ FFK + D + Y
Sbjct: 341 SNEITTYIVFMGCLLNNEEDVTFLRNDKLIIENHFGSNNEVSEFFKTISKDVVFEVDTSY 400
Query: 370 YQALLQEVKMYCGHWSSRLRYEYMHRYCGSPWAVVSQVVGTILLILTFLQT 420
+ + V Y W + L + H + SPW +S +++LT LQ+
Sbjct: 401 LNNVFKGVNEYTKKWYNGLWAGFRHTHFESPWTFLSSCAVLFVILLTMLQS 451
>sp|P0C897|Y3264_ARATH Putative UPF0481 protein At3g02645 OS=Arabidopsis thaliana
GN=At3g02645 PE=3 SV=1
Length = 529
Score = 55.5 bits (132), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 4/139 (2%)
Query: 254 PSVMKMQQSGIKLQRVNSASILDIKFRSN-GALEMPPLIIHKTTETLFRNLISFEQCCPN 312
PSV + ++G++ + +I + F SN G +P + + TET+ RNL+++E +
Sbjct: 346 PSVSDLHKAGVRFKPTAHGNISTVTFDSNSGQFYLPVINLDINTETVLRNLVAYEATNTS 405
Query: 313 YEPIVTSYANLMASVIHNKEDVELLSEY-LLIENCLNPGDVTHFFKILYNDAHLTNF-YY 370
+ T Y L+ +I ++EDV LL E +L+ + + + + LT +
Sbjct: 406 GPLVFTRYTELINGIIDSEEDVRLLREQGVLVSRLKSDQEAAEMWNGMSKSVRLTKVGFL 465
Query: 371 QALLQEV-KMYCGHWSSRL 388
+++V + Y G W ++
Sbjct: 466 DKTIEDVNRYYTGRWKVKI 484
Score = 55.1 bits (131), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 21/215 (9%)
Query: 30 LNASIFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHL 89
+ SIF PK L + ++Y P S GP+H +L + ++K M R++
Sbjct: 41 VTVSIFNVPKALMCSHPDSYTPHRVSIGPYHCLKPELH--EMERYKLMIARKIRNQYNSF 98
Query: 90 KWREIVDAVAPLKDHARLCYAGSIDLDDHEFIEVLVLDGCFIIEL-----FRKDSGIFPK 144
++ ++V+ + ++ R CY I + + ++ +D F+IE FRK + +
Sbjct: 99 RFHDLVEKLQSMEIKIRACYHKYIGFNGETLLWIMAVDSSFLIEFLKIYSFRKVETLINR 158
Query: 145 QPDDPTFAMSCFLEYLNHDLILLENQIPWLVLERLFSLTKASDSERESLITLTLEYFANI 204
+ D++++ENQIP VL + S + L+ L
Sbjct: 159 VGHNEIL----------RDIMMIENQIPLFVLRKTLEFQLESTESADDLLLSVLTGLCKD 208
Query: 205 FSSRKPETKPEQF---EVRNIKHILDLLRHSLVLP 236
S + +Q + + HILD L + +++P
Sbjct: 209 LSPLVIKFDDDQILKAQFQECNHILDFL-YQMIVP 242
>sp|Q740E5|PYRG_MYCPA CTP synthase OS=Mycobacterium paratuberculosis (strain ATCC BAA-968
/ K-10) GN=pyrG PE=3 SV=1
Length = 583
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 33 SIFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHLKWR 92
SI+ PKVL R +AY+ R + PF + + W DLLRR +PH R
Sbjct: 255 SIYDIPKVLHREELDAYVVRRLNL-PF----------RDVDWTEWDDLLRRVHEPHETVR 303
>sp|A0QH68|PYRG_MYCA1 CTP synthase OS=Mycobacterium avium (strain 104) GN=pyrG PE=3 SV=1
Length = 583
Score = 34.3 bits (77), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 11/60 (18%)
Query: 33 SIFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHLKWR 92
SI+ PKVL R +AY+ R + PF + + W DLLRR +PH R
Sbjct: 255 SIYDIPKVLHREELDAYVVRRLNL-PF----------RDVDWTEWDDLLRRVHEPHETVR 303
>sp|Q966W3|NDST_CAEEL Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 1
OS=Caenorhabditis elegans GN=hst-1 PE=2 SV=1
Length = 852
Score = 33.5 bits (75), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 57/150 (38%), Gaps = 21/150 (14%)
Query: 261 QSGIKLQRVNSASILDIKFRSNGALEMPPLIIHKTTETLFRNLISFEQCCPNYEPIVTSY 320
Q L R I D+ + G + E R LIS ++ NY T
Sbjct: 282 QKSFTLDRFVQVDIDDVFVGAQGT---------RIVEEDVRKLISTQKEFRNYVQNFTFM 332
Query: 321 ANLMASVIHNKEDVELLSEYLLIENCLNPGDVTHFFKILYNDAHLTNF-YYQALLQEVKM 379
S N +D+E + L+EN H ++ +N AH NF Y +A++ + K+
Sbjct: 333 LGFSGSYFRNGDDLEDRGDEFLVENAEKFVWFPHMWR--HNHAHEHNFTYLEAIMAQNKL 390
Query: 380 YCGHWSSRLRYEYMHRYCGSPWAVVSQVVG 409
+ + MH P+A+ Q G
Sbjct: 391 FA---------QNMHLPVDYPYAIAPQHDG 411
>sp|Q9UG01|IF172_HUMAN Intraflagellar transport protein 172 homolog OS=Homo sapiens
GN=IFT172 PE=1 SV=2
Length = 1749
Score = 32.3 bits (72), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 177 ERLFSLTKASDSERESLITLTLEYFANIFSSRKPETKPEQFEVRNIKHILDLLRHSLVLP 236
E L ++A+ E T+ L A+ +++R +Q E + + LLRH+ +LP
Sbjct: 1515 ENLVKSSEANSPAHEEFKTMLL--IAHYYATRSAAQSVKQLETVAARLSVSLLRHTQLLP 1572
Query: 237 LEKGY---KCSYRQGGWEN 252
++K + + + GW+N
Sbjct: 1573 VDKAFYEAGIAAKAVGWDN 1591
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.324 0.138 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 157,294,807
Number of Sequences: 539616
Number of extensions: 6553038
Number of successful extensions: 18005
Number of sequences better than 100.0: 8
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 17993
Number of HSP's gapped (non-prelim): 9
length of query: 428
length of database: 191,569,459
effective HSP length: 120
effective length of query: 308
effective length of database: 126,815,539
effective search space: 39059186012
effective search space used: 39059186012
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 63 (28.9 bits)