Query 046543
Match_columns 428
No_of_seqs 117 out of 677
Neff 7.2
Searched_HMMs 46136
Date Fri Mar 29 13:10:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046543.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046543hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03140 DUF247: Plant protein 100.0 2E-108 3E-113 841.8 33.1 377 34-416 1-391 (391)
2 PRK10404 hypothetical protein; 67.4 5.3 0.00012 33.2 2.8 20 398-418 78-97 (101)
3 PRK10132 hypothetical protein; 61.3 8 0.00017 32.6 2.8 20 398-418 84-103 (108)
4 PF11293 DUF3094: Protein of u 61.1 22 0.00049 25.9 4.6 36 374-414 9-44 (55)
5 PF12911 OppC_N: N-terminal TM 58.5 12 0.00027 26.9 3.1 33 393-425 9-41 (56)
6 PF07438 DUF1514: Protein of u 52.5 16 0.00034 27.7 2.8 21 401-421 2-22 (66)
7 PF14579 HHH_6: Helix-hairpin- 48.1 80 0.0017 25.2 6.7 81 263-348 1-84 (90)
8 PHA02103 hypothetical protein 47.3 42 0.00091 28.1 4.8 81 264-347 6-105 (135)
9 PF14770 TMEM18: Transmembrane 44.9 22 0.00048 30.7 3.0 49 373-424 54-102 (123)
10 KOG3110 Riboflavin kinase [Coe 40.0 22 0.00047 31.1 2.1 61 50-110 66-138 (153)
11 PF05957 DUF883: Bacterial pro 38.9 31 0.00067 27.9 2.9 20 398-418 71-90 (94)
12 COG4575 ElaB Uncharacterized c 38.6 31 0.00066 28.8 2.7 20 398-418 81-100 (104)
13 KOG4134 DNA-dependent RNA poly 36.2 32 0.00069 32.7 2.8 45 28-83 21-65 (253)
14 PF10961 DUF2763: Protein of u 36.1 53 0.0011 26.7 3.8 28 398-425 13-43 (91)
15 PF05421 DUF751: Protein of un 33.0 64 0.0014 24.3 3.5 29 397-425 31-59 (61)
16 PF15103 G0-G1_switch_2: G0/G1 31.5 51 0.0011 27.3 2.9 24 403-426 28-51 (102)
17 PF04971 Lysis_S: Lysis protei 30.6 71 0.0015 24.6 3.4 32 388-419 20-51 (68)
18 PF09069 EF-hand_3: EF-hand; 29.0 55 0.0012 26.6 2.8 55 71-127 2-76 (90)
19 PF11446 DUF2897: Protein of u 28.2 71 0.0015 23.5 2.9 21 399-419 4-24 (55)
20 PHA02680 ORF090 IMV phosphoryl 22.1 1.2E+02 0.0026 24.5 3.4 28 399-426 43-70 (91)
21 cd00925 Cyt_c_Oxidase_VIa Cyto 20.1 1E+02 0.0022 24.9 2.7 25 399-423 14-38 (86)
No 1
>PF03140 DUF247: Plant protein of unknown function; InterPro: IPR004158 The function of the plant proteins constituting this family is unknown.
Probab=100.00 E-value=1.5e-108 Score=841.82 Aligned_cols=377 Identities=36% Similarity=0.627 Sum_probs=337.2
Q ss_pred EeecCchhhcCCCCCcccceeeecCCCCCChhhhHHhHHHHHHHHHHhhccCCCCCCHHHHHHHHhhhHHHHhcccCCCC
Q 046543 34 IFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRRSRDPHLKWREIVDAVAPLKDHARLCYAGSI 113 (428)
Q Consensus 34 I~rVP~~lr~~n~~aY~P~~VsIGPyH~g~~~L~~mE~~K~~~~~~~l~r~~~~~~~~~~~~~~i~~~e~~~R~~Y~e~~ 113 (428)
|||||+++|++|+++|+|++|||||||||+++|+.||++|++|++.|++|....+.++++++++|++++++||+||++++
T Consensus 1 I~rVP~~lr~~~~~~Y~P~~VsIGPyH~g~~~L~~mE~~K~~~l~~~l~~~~~~~~~l~~~~~~i~~~e~~~R~~Y~~~~ 80 (391)
T PF03140_consen 1 IYRVPESLRDVNPKAYTPQVVSIGPYHHGKPDLQEMEEHKLRYLHRFLKRSGAPAESLEDYVEAIRSLEEEARACYAEDI 80 (391)
T ss_pred CcCCCHHHccCCchhcCCceEEeCCCCCCchhhhhhHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHHHHHHhcccc
Confidence 89999999999999999999999999999999999999999999999999533348999999999999999999999999
Q ss_pred C-CChhHHHHHHHHHHHHHHHHHHhhcCCCCCCCCCC-cccccchhhHHHHHHHHhccCchHHHHHHHHhhccCC-Cccc
Q 046543 114 D-LDDHEFIEVLVLDGCFIIELFRKDSGIFPKQPDDP-TFAMSCFLEYLNHDLILLENQIPWLVLERLFSLTKAS-DSER 190 (428)
Q Consensus 114 ~-~~~~ef~~MmllDgcFiLe~~~~~~~~~~~~~~d~-~~~~~~~~~~i~~DllLLENQiPffVL~~L~~~~~~~-~~~~ 190 (428)
+ +++++|++||++|||||||+|+++.. ..+.+|| +++.+|....|++||+|||||||||||++||++.... ....
T Consensus 81 ~~~~~~~f~~MmllDgCFlLe~~~~~~~--~~~~~d~~~~~~~~~~~~i~~Dl~LLENQIPffVL~~L~~l~~~~~~~~~ 158 (391)
T PF03140_consen 81 DDMSSDEFVEMMLLDGCFLLEFFLRYSR--SDGENDPGIFSRPWLLSAIRRDLLLLENQIPFFVLEKLFELLFGSKSDVD 158 (391)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHhhhh--ccccccccccccccccccchhheeeecccchHHHHHHHHHHhcccccCcc
Confidence 7 99999999999999999999999876 2345788 8899999999999999999999999999999999833 2457
Q ss_pred hhHHHHHHHhcchhccCCCCCCCccccccCCCCChHHHHHHhhcCCCCCCCCCC---CC----CCCcccccChHHHHHcC
Q 046543 191 ESLITLTLEYFANIFSSRKPETKPEQFEVRNIKHILDLLRHSLVLPLEKGYKCS---YR----QGGWENCPSVMKMQQSG 263 (428)
Q Consensus 191 ~~l~~l~~~~f~~~~~~~~~~~~~~~~~~~~~~HlLdL~~~~~~p~~~~~~~~~---~~----~~~~~~~~sAteL~~aG 263 (428)
.++.+++.+||....+...+. ......+++|||||+|.+++|+.......| .. ...+..|||||||++||
T Consensus 159 ~~l~~l~~~~~~~~~~~~~~~---~~~~~~~~~HlL~L~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~sA~eL~~aG 235 (391)
T PF03140_consen 159 ESLIDLVLKFFYKHWPSWPPD---EPISNPEPHHLLDLLRMSLLPSPPSSSPTPPRPPRSNGEKPPPKRIRSATELREAG 235 (391)
T ss_pred chHHHHHHhHhcccccccccc---ccccCCCCCChHHHHHHHhccccCCcccCCCCcccccccccccccCCCHHHHHhCC
Confidence 789999999994333322222 123456789999999999999322111111 11 12456899999999999
Q ss_pred cEEEecCCC-CeeeEEEccCcEEEcCcEEeecchhhHHHHHHHHhhcCCCCCCcceeHHHHHHhhcCChHhHHHHHhCCc
Q 046543 264 IKLQRVNSA-SILDIKFRSNGALEMPPLIIHKTTETLFRNLISFEQCCPNYEPIVTSYANLMASVIHNKEDVELLSEYLL 342 (428)
Q Consensus 264 Vkfk~~~~~-~llDI~F~~~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vtsY~~fM~~Li~t~eDV~lL~~~gI 342 (428)
|+||++++. +++||+|+ +|+|+||+|.||++|+++||||||||||+...+.+||||+.||++||+|++||++|+++||
T Consensus 236 V~fk~~~~~~~~lDv~F~-~G~L~IP~L~id~~T~~~lrNLiA~Eq~~~~~~~~vtsY~~fm~~Li~t~~DV~lL~~kgI 314 (391)
T PF03140_consen 236 VKFKPSETDRSLLDVKFK-KGVLEIPPLYIDDNTESLLRNLIAFEQCHPPTGSYVTSYVFFMDSLINTPEDVELLRRKGI 314 (391)
T ss_pred cEEeeccCccccccceec-CCEEEeCeEEECCcchHHHhHHHHHHHHhccCCchHhHHHHHHHHHhCcHhhHHHHHhCCe
Confidence 999999876 59999999 9999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeccCCCchH-HHHHHHhccCcccC--chhHHHHHHHHHhhhcCchhhhhhhhcccccCchhHHHHHHHHHHHHHHH
Q 046543 343 IENCLNPGDV-THFFKILYNDAHLT--NFYYQALLQEVKMYCGHWSSRLRYEYMHRYCGSPWAVVSQVVGTILLILT 416 (428)
Q Consensus 343 I~n~lg~de~-a~lFn~L~~~~~~~--~~y~~~v~~~l~~~~~~r~~~~~a~l~~~yf~npW~~is~~aA~~ll~lt 416 (428)
|+|++|+|++ ++|||+||+++..+ ++||.+++++||+||++||++|+|+++|+||+|||+++|++||+++|++|
T Consensus 315 i~~~l~~d~eva~~F~~L~~~v~~~~~~~~~~~v~~~l~~~~~~~~~~~~a~l~~~yf~~pw~~is~~aa~~ll~lT 391 (391)
T PF03140_consen 315 IVNWLGSDEEVAKLFNGLCKGVVFDVDDSYYSDVCEDLNKYYQSRWNRWWAWLRRKYFSNPWTFISLVAAIILLLLT 391 (391)
T ss_pred EecCCCCcHHHHHHHHHHhccCCCCCccHHHHHHHHHHHHHhcChHHHHHHHHhhhhcCCcHHHHHHHHHHHHHHhC
Confidence 9999999999 99999999999988 78999999999999999999999999999999999999999999999987
No 2
>PRK10404 hypothetical protein; Provisional
Probab=67.36 E-value=5.3 Score=33.21 Aligned_cols=20 Identities=25% Similarity=0.536 Sum_probs=15.0
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 046543 398 GSPWAVVSQVVGTILLILTFL 418 (428)
Q Consensus 398 ~npW~~is~~aA~~ll~lt~~ 418 (428)
.|||..+++ ||.++|++.++
T Consensus 78 e~Pw~avGi-aagvGlllG~L 97 (101)
T PRK10404 78 EKPWQGIGV-GAAVGLVLGLL 97 (101)
T ss_pred hCcHHHHHH-HHHHHHHHHHH
Confidence 389999986 45577777765
No 3
>PRK10132 hypothetical protein; Provisional
Probab=61.31 E-value=8 Score=32.56 Aligned_cols=20 Identities=20% Similarity=0.521 Sum_probs=14.7
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 046543 398 GSPWAVVSQVVGTILLILTFL 418 (428)
Q Consensus 398 ~npW~~is~~aA~~ll~lt~~ 418 (428)
.|||..+++ ||.++|++.++
T Consensus 84 ~~Pw~svgi-aagvG~llG~L 103 (108)
T PRK10132 84 ERPWCSVGT-AAAVGIFIGAL 103 (108)
T ss_pred hCcHHHHHH-HHHHHHHHHHH
Confidence 489999986 44577777665
No 4
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=61.11 E-value=22 Score=25.95 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=27.6
Q ss_pred HHHHHhhhcCchhhhhhhhcccccCchhHHHHHHHHHHHHH
Q 046543 374 LQEVKMYCGHWSSRLRYEYMHRYCGSPWAVVSQVVGTILLI 414 (428)
Q Consensus 374 ~~~l~~~~~~r~~~~~a~l~~~yf~npW~~is~~aA~~ll~ 414 (428)
.++|++|-++.|+.- -|+-|+ ||..+.++.|+++.+
T Consensus 9 Q~~Vd~yL~a~~~~V----ER~PFr-P~~Ll~~li~Vv~gl 44 (55)
T PF11293_consen 9 QQRVDEYLQAGVNQV----ERKPFR-PWRLLIVLIVVVIGL 44 (55)
T ss_pred HHHHHHHHhCCCCcc----ccCCcc-hHHHHHHHHHHHHHH
Confidence 468899999999743 466777 999998888877443
No 5
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=58.53 E-value=12 Score=26.94 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.1
Q ss_pred cccccCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 046543 393 MHRYCGSPWAVVSQVVGTILLILTFLQTLFSSP 425 (428)
Q Consensus 393 ~~~yf~npW~~is~~aA~~ll~lt~~Qtv~sv~ 425 (428)
.+++++|+...+|++.-+++++++++.-+++-+
T Consensus 9 ~~~f~~nk~a~~gl~il~~~vl~ai~~p~~~p~ 41 (56)
T PF12911_consen 9 WRRFRRNKLAVIGLIILLILVLLAIFAPFISPY 41 (56)
T ss_pred HHHHHhCchHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 377788999999999888888888888776644
No 6
>PF07438 DUF1514: Protein of unknown function (DUF1514); InterPro: IPR009999 This entry is represented by Bacteriophage phi PVL, Orf60. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several Staphylococcus aureus and related bacteriophage proteins of around 65 residues in length. The function of this family is unknown.
Probab=52.50 E-value=16 Score=27.67 Aligned_cols=21 Identities=29% Similarity=0.496 Sum_probs=19.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHh
Q 046543 401 WAVVSQVVGTILLILTFLQTL 421 (428)
Q Consensus 401 W~~is~~aA~~ll~lt~~Qtv 421 (428)
|.++|.+.|+++|++-.+|+-
T Consensus 2 WIiiSIvLai~lLI~l~~ns~ 22 (66)
T PF07438_consen 2 WIIISIVLAIALLISLSVNSE 22 (66)
T ss_pred hhhHHHHHHHHHHHHHhhhHH
Confidence 999999999999999888875
No 7
>PF14579 HHH_6: Helix-hairpin-helix motif; PDB: 2HPM_A 2HPI_A 3E0D_A 3F2C_A 3F2B_A 3F2D_A 2HQA_A 2HNH_A.
Probab=48.10 E-value=80 Score=25.21 Aligned_cols=81 Identities=17% Similarity=0.174 Sum_probs=56.3
Q ss_pred CcEEEecC-CCCeeeEEEcc-CcEEEcCcEEeecchhhHHHHHHHHhhcCCCCCCcceeHHHHHHhh-cCChHhHHHHHh
Q 046543 263 GIKLQRVN-SASILDIKFRS-NGALEMPPLIIHKTTETLFRNLISFEQCCPNYEPIVTSYANLMASV-IHNKEDVELLSE 339 (428)
Q Consensus 263 GVkfk~~~-~~~llDI~F~~-~G~L~IP~L~id~~T~~llrNLiA~Eq~~~~~~~~vtsY~~fM~~L-i~t~eDV~lL~~ 339 (428)
||++.+.. ..+-.+-+... +|.+.+|--.|..-.+.....+++-=+ . ..++|+..|...+ --+..+++.|.+
T Consensus 1 Gi~v~ppdIn~S~~~~~~~~~~~~Ir~gl~~Ikglg~~~a~~I~~~R~-~----g~f~s~~df~~R~~~i~~~~le~Li~ 75 (90)
T PF14579_consen 1 GIKVLPPDINKSDADFTVEDKNNAIRLGLSAIKGLGEEVAEKIVEERE-N----GPFKSLEDFIQRLPKINKRQLEALIK 75 (90)
T ss_dssp T-EEE---TTT-BSS-EEETT-TEEE-BGGGSTTS-HHHHHHHHHHHH-C----SS-SSHHHHHHHS-TS-HHHHHHHHH
T ss_pred CCEEeCCeecccCCCeEEECCCCEEeehHhhcCCCCHHHHHHHHHhHh-c----CCCCCHHHHHHHHhcCCHHHHHHHHH
Confidence 77887754 34444555552 279999999999999999998887665 3 3488999999999 888999999999
Q ss_pred CCceeccCC
Q 046543 340 YLLIENCLN 348 (428)
Q Consensus 340 ~gII~n~lg 348 (428)
.|.+...-.
T Consensus 76 aGafd~~~~ 84 (90)
T PF14579_consen 76 AGAFDSFGK 84 (90)
T ss_dssp TTTTTTCSS
T ss_pred CCCccccCh
Confidence 999977533
No 8
>PHA02103 hypothetical protein
Probab=47.34 E-value=42 Score=28.07 Aligned_cols=81 Identities=20% Similarity=0.401 Sum_probs=52.7
Q ss_pred cEEEe---cCCCCeee--EEEcc---CcE--EEcCcEEeecchhhHHHHHHHHhhcCCCCC---------CcceeHHHHH
Q 046543 264 IKLQR---VNSASILD--IKFRS---NGA--LEMPPLIIHKTTETLFRNLISFEQCCPNYE---------PIVTSYANLM 324 (428)
Q Consensus 264 Vkfk~---~~~~~llD--I~F~~---~G~--L~IP~L~id~~T~~llrNLiA~Eq~~~~~~---------~~vtsY~~fM 324 (428)
.||++ ...++.+- |.|+- +.+ -+||.+..|....-+-|=.+-+|.|..... .++-+|-..+
T Consensus 6 lkf~~fk~kd~rn~f~v~~~fsdkf~d~t~~~e~pai~~~~~~~ei~rl~~f~~kck~~yp~gkgg~~df~~ipdyyryf 85 (135)
T PHA02103 6 LKFTPFKPKDDRNTFMVKMHFSDKFSDATLEYEIPAIDADRTKAEIVRLITFMDKCKAEYPRGKGGQADFNHIPDYYRYF 85 (135)
T ss_pred eeeeccCCccCcceEEEEEecccccCcceeEEeccccccchhhHHHHHHHHHHHHHHhhCCCCCCCccccccChHHHHHh
Confidence 45554 33455544 44441 455 569999999999999999999999975521 2244444333
Q ss_pred HhhcCChHhHHHHHhCCceeccC
Q 046543 325 ASVIHNKEDVELLSEYLLIENCL 347 (428)
Q Consensus 325 ~~Li~t~eDV~lL~~~gII~n~l 347 (428)
-..+|-|++-.+.||=.-|-
T Consensus 86 ---~ee~e~ie~we~ygve~l~~ 105 (135)
T PHA02103 86 ---GEEAEGVELWEEYGVEGLCW 105 (135)
T ss_pred ---cccchhhhHHHHhCcceeee
Confidence 35677788888877755443
No 9
>PF14770 TMEM18: Transmembrane protein 18
Probab=44.86 E-value=22 Score=30.67 Aligned_cols=49 Identities=16% Similarity=0.081 Sum_probs=35.9
Q ss_pred HHHHHHhhhcCchhhhhhhhcccccCchhHHHHHHHHHHHHHHHHHHHhhhc
Q 046543 373 LLQEVKMYCGHWSSRLRYEYMHRYCGSPWAVVSQVVGTILLILTFLQTLFSS 424 (428)
Q Consensus 373 v~~~l~~~~~~r~~~~~a~l~~~yf~npW~~is~~aA~~ll~lt~~Qtv~sv 424 (428)
..+.+|++..+-| +..-+++||.+-=.++|++-++=+|+.+++..+..+
T Consensus 54 ~aE~iN~~~a~nW---~~Fs~qnYFDs~G~Fisvv~s~PlLl~~~ii~~~~l 102 (123)
T PF14770_consen 54 CAEYINEYAARNW---RSFSKQNYFDSSGVFISVVFSAPLLLNCLIILVNWL 102 (123)
T ss_pred HHHHHHHHHHHHH---HHHhhccCcCCCCeeehHHHHHhHHHHHHHHHHHHH
Confidence 3477888887655 455568999998899999888777766666655443
No 10
>KOG3110 consensus Riboflavin kinase [Coenzyme transport and metabolism]
Probab=40.04 E-value=22 Score=31.13 Aligned_cols=61 Identities=15% Similarity=0.214 Sum_probs=37.9
Q ss_pred ccceeeec--CCCCCCh---hhhHHhHHHHHHHHHHhh-------ccCCCCCCHHHHHHHHhhhHHHHhcccC
Q 046543 50 IPRAFSFG--PFHWKDE---QLKLTQTMKWKCMQDLLR-------RSRDPHLKWREIVDAVAPLKDHARLCYA 110 (428)
Q Consensus 50 ~P~~VsIG--PyH~g~~---~L~~mE~~K~~~~~~~l~-------r~~~~~~~~~~~~~~i~~~e~~~R~~Y~ 110 (428)
-|+++||| ||..++. ++..++..|.-+-.+.++ |...+=.++++++.+|..-.+.|+..-+
T Consensus 66 ~kMvmSIGwNP~Y~N~~Kt~E~hlih~f~~DFYge~l~~~IvGyiRpe~nf~slesLi~~I~~Di~vA~~~l~ 138 (153)
T KOG3110|consen 66 FKMVMSIGWNPYYKNKKKTMELHLIHDFGEDFYGETLKVIIVGYIRPELNFDSLESLIEAIHGDIEVAKKVLD 138 (153)
T ss_pred eeEEEEcccCcccCCcccceeeeeehhcccchhhheeeEEEEEeeccccCcchHHHHHHHHHhhHHHHHHhhc
Confidence 48999999 8887754 233334444433333332 1111224799999999998888887654
No 11
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=38.94 E-value=31 Score=27.88 Aligned_cols=20 Identities=30% Similarity=0.697 Sum_probs=13.9
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 046543 398 GSPWAVVSQVVGTILLILTFL 418 (428)
Q Consensus 398 ~npW~~is~~aA~~ll~lt~~ 418 (428)
.|||..+++.++ ++|++.++
T Consensus 71 e~P~~svgiAag-vG~llG~L 90 (94)
T PF05957_consen 71 ENPWQSVGIAAG-VGFLLGLL 90 (94)
T ss_pred HChHHHHHHHHH-HHHHHHHH
Confidence 589999976655 55666554
No 12
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=38.57 E-value=31 Score=28.81 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=13.6
Q ss_pred CchhHHHHHHHHHHHHHHHHH
Q 046543 398 GSPWAVVSQVVGTILLILTFL 418 (428)
Q Consensus 398 ~npW~~is~~aA~~ll~lt~~ 418 (428)
-|||..|++-|| ++|++.++
T Consensus 81 e~PWq~VGvaAa-VGlllGlL 100 (104)
T COG4575 81 ENPWQGVGVAAA-VGLLLGLL 100 (104)
T ss_pred cCCchHHHHHHH-HHHHHHHH
Confidence 489999986655 55555543
No 13
>KOG4134 consensus DNA-dependent RNA polymerase I [Transcription]
Probab=36.23 E-value=32 Score=32.67 Aligned_cols=45 Identities=7% Similarity=-0.031 Sum_probs=34.1
Q ss_pred cCCCCeEeecCchhhcCCCCCcccceeeecCCCCCChhhhHHhHHHHHHHHHHhhc
Q 046543 28 MALNASIFKTPKVLFRHNENAYIPRAFSFGPFHWKDEQLKLTQTMKWKCMQDLLRR 83 (428)
Q Consensus 28 ~~~~~~I~rVP~~lr~~n~~aY~P~~VsIGPyH~g~~~L~~mE~~K~~~~~~~l~r 83 (428)
.+.+-|++++|-.+ .+|+||||-.++.-..||+|=..-+.....+
T Consensus 21 nsp~sclv~~t~dl-----------hlalaP~yl~npl~~~i~ehld~~vl~y~~~ 65 (253)
T KOG4134|consen 21 NSPESCLVCITTDL-----------HLALAPYYLANPLHALIEEHLDTKVLFYDSG 65 (253)
T ss_pred cCCcceEEEeeehe-----------eeeecchhhcchhHHHHHHHhhHHHhhhccC
Confidence 45566999999875 7999999998885557888876666555555
No 14
>PF10961 DUF2763: Protein of unknown function (DUF2763); InterPro: IPR024491 This entry represents an eukaryotic family of selenoproteins. It includes SelK, which seems to play an important role in protecting cells from endoplasmic reticulum stress-induced apoptosis [] and SelG, which may be involved in regulating the redox state of the cell [].
Probab=36.11 E-value=53 Score=26.75 Aligned_cols=28 Identities=43% Similarity=0.732 Sum_probs=21.0
Q ss_pred Cchh---HHHHHHHHHHHHHHHHHHHhhhcc
Q 046543 398 GSPW---AVVSQVVGTILLILTFLQTLFSSP 425 (428)
Q Consensus 398 ~npW---~~is~~aA~~ll~lt~~Qtv~sv~ 425 (428)
++|| .++-++-+++-+|..++||+++.-
T Consensus 13 rspWrls~I~d~Fwgi~~fI~lFF~Tl~~p~ 43 (91)
T PF10961_consen 13 RSPWRLSRITDFFWGIINFIVLFFQTLFSPD 43 (91)
T ss_pred CCCccHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4677 366677778888888899998754
No 15
>PF05421 DUF751: Protein of unknown function (DUF751); InterPro: IPR008470 This family, Ycf33, contains several plant, cyanobacterial and algal chlorplast encoded proteins of unknown function. The family is exclusively found in phototrophic organisms and may therefore play a role in photosynthesis.
Probab=32.95 E-value=64 Score=24.29 Aligned_cols=29 Identities=14% Similarity=-0.026 Sum_probs=24.8
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 046543 397 CGSPWAVVSQVVGTILLILTFLQTLFSSP 425 (428)
Q Consensus 397 f~npW~~is~~aA~~ll~lt~~Qtv~sv~ 425 (428)
++||-++++++++++..+..+.+|+-++.
T Consensus 31 lk~p~tai~~i~~~~~~~~~l~~tL~aMl 59 (61)
T PF05421_consen 31 LKNPVTAIALIGILIGGFIFLYFTLRAML 59 (61)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 47899999999999999999998887654
No 16
>PF15103 G0-G1_switch_2: G0/G1 switch protein 2
Probab=31.50 E-value=51 Score=27.35 Aligned_cols=24 Identities=17% Similarity=0.257 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccc
Q 046543 403 VVSQVVGTILLILTFLQTLFSSPY 426 (428)
Q Consensus 403 ~is~~aA~~ll~lt~~Qtv~sv~~ 426 (428)
+++.+.|+++.++.+++|+|+-++
T Consensus 28 vLGSvLA~~Gvv~GLVEtVCsPFs 51 (102)
T PF15103_consen 28 VLGSVLAFFGVVIGLVETVCSPFS 51 (102)
T ss_pred hhhhHHHHHHHHHHHHHHHhCccc
Confidence 467788899999999999998664
No 17
>PF04971 Lysis_S: Lysis protein S ; InterPro: IPR007054 The lysis S protein is a cytotoxic protein forming holes in membranes causing cell lysis. The action of Lysis S is independent of the proportion of acidic phospholipids in the membrane [].
Probab=30.58 E-value=71 Score=24.59 Aligned_cols=32 Identities=22% Similarity=0.528 Sum_probs=23.2
Q ss_pred hhhhhcccccCchhHHHHHHHHHHHHHHHHHH
Q 046543 388 LRYEYMHRYCGSPWAVVSQVVGTILLILTFLQ 419 (428)
Q Consensus 388 ~~a~l~~~yf~npW~~is~~aA~~ll~lt~~Q 419 (428)
|...+.-.+-+.-|.+|++++++++-++|.+-
T Consensus 20 wl~~lld~~sp~qW~aIGvi~gi~~~~lt~lt 51 (68)
T PF04971_consen 20 WLLQLLDQFSPSQWAAIGVIGGIFFGLLTYLT 51 (68)
T ss_pred HHHHHHhccCcccchhHHHHHHHHHHHHHHHh
Confidence 44444455556779999999999877777664
No 18
>PF09069 EF-hand_3: EF-hand; InterPro: IPR015154 Like other EF hand domains, this domain forms a helix-loop-helix motif, though since it does not contain the canonical pattern of calcium binding residues found in many EF hand domains, it does not bind calcium ions. The main function of this domain is the provision of specificity in beta-dystroglycan recognition, though in dystrophin it serves an additional role: stabilisation of the WW domain (IPR001202 from INTERPRO), enhancing dystroglycan binding []. ; PDB: 1EG3_A 1EG4_A.
Probab=29.02 E-value=55 Score=26.62 Aligned_cols=55 Identities=18% Similarity=0.361 Sum_probs=33.1
Q ss_pred HHHHHHHHHHhhccCCCC----CCHHHHHHHHh-------------hhHHHHhcccCC---CCCCChhHHHHHHHHH
Q 046543 71 TMKWKCMQDLLRRSRDPH----LKWREIVDAVA-------------PLKDHARLCYAG---SIDLDDHEFIEVLVLD 127 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~~~~----~~~~~~~~~i~-------------~~e~~~R~~Y~e---~~~~~~~ef~~MmllD 127 (428)
+.|.||+-+++... +| ..++.++..+. ..|..+|+|+.. .-+++.++|+..|..|
T Consensus 2 ~dKyRylFslisd~--~g~~~~~~l~~lL~d~lqip~~vgE~~aFg~~e~sv~sCF~~~~~~~~I~~~~Fl~wl~~e 76 (90)
T PF09069_consen 2 EDKYRYLFSLISDS--NGCMDQRKLGLLLHDVLQIPRAVGEGPAFGYIEPSVRSCFQQVQLSPKITENQFLDWLMSE 76 (90)
T ss_dssp HHHHHHHHHHHS-T--TS-B-HHHHHHHHHHHHHHHHHTT-GGGGT--HHHHHHHHHHTTT-S-B-HHHHHHHHHT-
T ss_pred hHHHHHHHHHHcCC--CCCCcHHHHHHHHHHHHHHHHHhCccccccCcHHHHHHHhcccCCCCccCHHHHHHHHHhC
Confidence 35889998888773 33 23555544432 367788999965 4578889998887654
No 19
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=28.18 E-value=71 Score=23.54 Aligned_cols=21 Identities=29% Similarity=0.680 Sum_probs=17.3
Q ss_pred chhHHHHHHHHHHHHHHHHHH
Q 046543 399 SPWAVVSQVVGTILLILTFLQ 419 (428)
Q Consensus 399 npW~~is~~aA~~ll~lt~~Q 419 (428)
+||.++.++.|+++--++++.
T Consensus 4 ~~wlIIviVlgvIigNia~LK 24 (55)
T PF11446_consen 4 NPWLIIVIVLGVIIGNIAALK 24 (55)
T ss_pred hhhHHHHHHHHHHHhHHHHHH
Confidence 699999999998877776664
No 20
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=22.12 E-value=1.2e+02 Score=24.54 Aligned_cols=28 Identities=18% Similarity=0.103 Sum_probs=17.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhhccc
Q 046543 399 SPWAVVSQVVGTILLILTFLQTLFSSPY 426 (428)
Q Consensus 399 npW~~is~~aA~~ll~lt~~Qtv~sv~~ 426 (428)
++|+++|.++=+++.++++-=.+||.+.
T Consensus 43 ~~wRalSii~FIlG~vl~lGilifs~y~ 70 (91)
T PHA02680 43 YVWRALSVTCFIVGAVLLLGLFVFSMYR 70 (91)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4788887776666555555555666554
No 21
>cd00925 Cyt_c_Oxidase_VIa Cytochrome c oxidase subunit VIa. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit VIa is expressed in two tissue-specific isoforms in mammals but not fish. VIa-H is the heart and skeletal muscle isoform; VIa-L is the liver or non-muscle isoform. Mammalian VIa-H induces a slip in CcO (decrease in proton/electron stoichiometry) at high intramitochondrial ATP/ADP ratios, while VIa-L induces a permanent slip i
Probab=20.11 E-value=1e+02 Score=24.88 Aligned_cols=25 Identities=20% Similarity=0.320 Sum_probs=21.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhhh
Q 046543 399 SPWAVVSQVVGTILLILTFLQTLFS 423 (428)
Q Consensus 399 npW~~is~~aA~~ll~lt~~Qtv~s 423 (428)
+-|+-||+++|+-+++++.+.++..
T Consensus 14 ~~WkkiS~~va~P~v~l~~~n~y~~ 38 (86)
T cd00925 14 ELWKKISFYVALPAVALCMLNAYLK 38 (86)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHhh
Confidence 4589999999999999999988754
Done!