Query 046543
Match_columns 428
No_of_seqs 117 out of 677
Neff 7.2
Searched_HMMs 29240
Date Mon Mar 25 23:17:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046543.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046543hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l27_B Peptide agonist; CRF, E 24.5 18 0.00061 23.4 0.3 19 288-307 1-19 (38)
2 2rmf_A Urocortin, HUCN1; CRF l 21.1 15 0.0005 24.1 -0.7 19 288-307 3-21 (40)
3 3drx_A BTB/POZ domain-containi 20.4 78 0.0027 28.4 3.7 53 12-64 100-164 (202)
4 1v54_G Cytochrome C oxidase po 14.2 1.1E+02 0.0039 23.4 2.8 24 399-422 14-37 (85)
5 2kru_A Light-independent proto 13.3 55 0.0019 23.8 0.7 13 169-181 15-27 (63)
6 3s8f_C Cytochrome C oxidase po 12.7 1.5E+02 0.0053 18.7 2.6 21 405-425 7-27 (34)
7 2j6b_A AFV3-109; sulfolobus, c 12.5 1.5E+02 0.0052 23.8 3.1 32 330-361 26-57 (109)
8 2y69_G Cytochrome C oxidase po 11.4 1.5E+02 0.0053 23.3 2.8 24 399-422 26-49 (97)
9 2x4i_A CAG38848, uncharacteriz 11.2 1.9E+02 0.0066 23.4 3.4 32 330-361 28-59 (114)
10 3ism_C CG4930; endonuclease, e 9.7 1.3E+02 0.0043 28.9 2.0 66 329-394 217-301 (359)
No 1
>2l27_B Peptide agonist; CRF, ECD1, family B1, alpha helical CRF, membrane P peptide binding protein; NMR {Homo sapiens}
Probab=24.49 E-value=18 Score=23.40 Aligned_cols=19 Identities=26% Similarity=0.607 Sum_probs=15.4
Q ss_pred CcEEeecchhhHHHHHHHHh
Q 046543 288 PPLIIHKTTETLFRNLISFE 307 (428)
Q Consensus 288 P~L~id~~T~~llrNLiA~E 307 (428)
||+.+| -|..+|||++-..
T Consensus 1 PPiSlD-LTFhlLR~m~ema 19 (38)
T 2l27_B 1 PPISLD-LTFNLLREVLEIA 19 (38)
T ss_dssp CCCCSH-HHHHHHHHHHHHH
T ss_pred CCcchh-HHHHHHHHHHHHH
Confidence 777877 5999999998664
No 2
>2rmf_A Urocortin, HUCN1; CRF ligand, sauvagine, astressin2B, urocortins, urotensins, CRF receptors, amidation, cleavage on PAIR of basic residues, hormone; NMR {Synthetic} SCOP: j.16.1.1
Probab=21.08 E-value=15 Score=24.08 Aligned_cols=19 Identities=37% Similarity=0.558 Sum_probs=15.2
Q ss_pred CcEEeecchhhHHHHHHHHh
Q 046543 288 PPLIIHKTTETLFRNLISFE 307 (428)
Q Consensus 288 P~L~id~~T~~llrNLiA~E 307 (428)
||+.|| -|..+|||++-..
T Consensus 3 PpiSiD-LTFHlLR~miema 21 (40)
T 2rmf_A 3 PSLSID-LTFHLLRTLLELA 21 (40)
T ss_dssp CCHHHH-HHHHHHHHHHHHH
T ss_pred CCcchh-hHHHHHHHHHHHH
Confidence 777777 5899999998654
No 3
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A
Probab=20.38 E-value=78 Score=28.39 Aligned_cols=53 Identities=11% Similarity=0.259 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHHHh---hccCCCCeEeecCc-------hhhcCCCCCcc-cceeeec-CCCCCCh
Q 046543 12 KLLGSSFEDMMAEK---LAMALNASIFKTPK-------VLFRHNENAYI-PRAFSFG-PFHWKDE 64 (428)
Q Consensus 12 ~~~~~~i~~~~~~~---~~~~~~~~I~rVP~-------~lr~~n~~aY~-P~~VsIG-PyH~g~~ 64 (428)
..+...+++++.+. .+....-++|||=. .+-....+.+. .++|+|| .|.+|.+
T Consensus 100 ~~Lv~~l~~~i~ere~~~~~~~~k~v~~v~qc~~~el~~~~s~~~d~~~~~~~~~~~~~~~~~~~ 164 (202)
T 3drx_A 100 TSLIKLVKDKIRERDSKTSQVPVKHVYRVLQCQEEELTQMVSTMSDGWKFEQLVSIGSSYNYGNE 164 (202)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCSCCCEEEEEEECSTHHHHHHHTCCTTCEEEEEEEC---------
T ss_pred HHHHHHHHHHHHHHhcccccCCCcceeeeeeCCHHHHHHHHHhhccccChhheEeccccccCCCc
Confidence 34555555444321 23334557888844 24455677776 7899999 8998875
No 4
>1v54_G Cytochrome C oxidase polypeptide VIA-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.2.1 PDB: 1v55_G* 2dyr_G* 2dys_G* 2eij_G* 2eik_G* 2eil_G* 2eim_G* 2ein_G* 2zxw_G* 3abk_G* 3abl_G* 3abm_G* 3ag1_G* 3ag2_G* 3ag3_G* 3ag4_G* 3asn_G* 3aso_G* 2occ_G* 1oco_G* ...
Probab=14.25 E-value=1.1e+02 Score=23.41 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 046543 399 SPWAVVSQVVGTILLILTFLQTLF 422 (428)
Q Consensus 399 npW~~is~~aA~~ll~lt~~Qtv~ 422 (428)
+-|+-||+++|+=+++++.+.++.
T Consensus 14 ~~Wkkis~~va~P~v~l~~~n~y~ 37 (85)
T 1v54_G 14 RTWRFLTFGLALPSVALCTLNSWL 37 (85)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 358999999998888998888764
No 5
>2kru_A Light-independent protochlorophyllide reductase subunit B; NESG, PSI, BCHB, bacteriochlorophyll biosynthesis, chlorophyll biosynthesis; NMR {Chlorobaculum tepidum}
Probab=13.26 E-value=55 Score=23.79 Aligned_cols=13 Identities=15% Similarity=0.565 Sum_probs=9.7
Q ss_pred cCchHHHHHHHHh
Q 046543 169 NQIPWLVLERLFS 181 (428)
Q Consensus 169 NQiPffVL~~L~~ 181 (428)
++|||||=.++=+
T Consensus 15 kkIP~FVR~kvrr 27 (63)
T 2kru_A 15 GKVPFFVRKKVRK 27 (63)
T ss_dssp TTSCHHHHHHHHH
T ss_pred HhCCHHHHHHHHH
Confidence 5699999766544
No 6
>3s8f_C Cytochrome C oxidase polypeptide 2A; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 2qpd_C* 2qpe_C* 3bvd_C* 3qjq_C* 3qjr_C* 3qjs_C* 3qjt_C* 3qju_C* 3qjv_C* 1xme_C* 3s8g_C* 4esl_C* 4ev3_C* 4f05_C* 4fa7_C* 4faa_C* 1ehk_C* 3eh3_C* 3eh4_C* 3eh5_C* ...
Probab=12.74 E-value=1.5e+02 Score=18.68 Aligned_cols=21 Identities=19% Similarity=0.186 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHhhhcc
Q 046543 405 SQVVGTILLILTFLQTLFSSP 425 (428)
Q Consensus 405 s~~aA~~ll~lt~~Qtv~sv~ 425 (428)
+++|++.++-+.++=+++.++
T Consensus 7 GTl~~V~ilg~~I~i~W~~vf 27 (34)
T 3s8f_C 7 GALAVILVLTLTILVFWLGVY 27 (34)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ceehHHHHHHHHHHHHHHHHH
Confidence 466667767777776666654
No 7
>2j6b_A AFV3-109; sulfolobus, crenarchaea, viral protein; 1.3A {Acidianus filamentous virus 1} SCOP: d.321.1.1 PDB: 2j6c_A
Probab=12.47 E-value=1.5e+02 Score=23.84 Aligned_cols=32 Identities=3% Similarity=0.078 Sum_probs=27.2
Q ss_pred ChHhHHHHHhCCceeccCCCchHHHHHHHhcc
Q 046543 330 NKEDVELLSEYLLIENCLNPGDVTHFFKILYN 361 (428)
Q Consensus 330 t~eDV~lL~~~gII~n~lg~de~a~lFn~L~~ 361 (428)
+.++++.+..++-+++..|.+..|++.+.||.
T Consensus 26 s~~Ea~~~l~~~~~vSaIGH~sTA~lls~Llg 57 (109)
T 2j6b_A 26 TIQEAKELVTKEQFTSAIGHQATAELLSSILG 57 (109)
T ss_dssp CHHHHHHHHHHSCEEECBCSHHHHHHHHHHHT
T ss_pred CHHHHHHHhcccceEEeeccHHHHHHHHHHhC
Confidence 56788888778888888999888999999996
No 8
>2y69_G Cytochrome C oxidase polypeptide 6A2; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=11.38 E-value=1.5e+02 Score=23.27 Aligned_cols=24 Identities=13% Similarity=0.239 Sum_probs=20.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhh
Q 046543 399 SPWAVVSQVVGTILLILTFLQTLF 422 (428)
Q Consensus 399 npW~~is~~aA~~ll~lt~~Qtv~ 422 (428)
+-|+-||+++|+=+++++.+.++.
T Consensus 26 ~~WkkiS~~va~P~v~l~~~n~y~ 49 (97)
T 2y69_G 26 RTWRFLTFGLALPSVALCTLNSWL 49 (97)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999998888888888764
No 9
>2x4i_A CAG38848, uncharacterized protein 114; unknown function, DUF1874, archeal virus; 2.20A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=11.24 E-value=1.9e+02 Score=23.40 Aligned_cols=32 Identities=9% Similarity=0.036 Sum_probs=27.0
Q ss_pred ChHhHHHHHhCCceeccCCCchHHHHHHHhcc
Q 046543 330 NKEDVELLSEYLLIENCLNPGDVTHFFKILYN 361 (428)
Q Consensus 330 t~eDV~lL~~~gII~n~lg~de~a~lFn~L~~ 361 (428)
+.++++.+..++-+++..|.+..|++.+.||.
T Consensus 28 s~~EAk~~v~~~~~iSaIGH~sTA~lls~Llg 59 (114)
T 2x4i_A 28 DRLEFCENIDNEDIINSIGHDSTIQLINSLCG 59 (114)
T ss_dssp CHHHHHHHHCCTTEEECCCCHHHHHHHHHHHC
T ss_pred CHHHHHHHhcccCeEEeeccHHHHHHHHHHhC
Confidence 36778888878888889999888999999985
No 10
>3ism_C CG4930; endonuclease, endonuclease inhibitor complex, metal complex, hydrolase, hydrolase inhibitor-hydrolase complex; 2.20A {Drosophila melanogaster}
Probab=9.70 E-value=1.3e+02 Score=28.90 Aligned_cols=66 Identities=12% Similarity=0.102 Sum_probs=44.6
Q ss_pred CChHhHHHHHhCCceeccCCCchH-HHHHHHhccCc-------ccC----chhHHHHHHHHHhhhcC-----c--hhhhh
Q 046543 329 HNKEDVELLSEYLLIENCLNPGDV-THFFKILYNDA-------HLT----NFYYQALLQEVKMYCGH-----W--SSRLR 389 (428)
Q Consensus 329 ~t~eDV~lL~~~gII~n~lg~de~-a~lFn~L~~~~-------~~~----~~y~~~v~~~l~~~~~~-----r--~~~~~ 389 (428)
.-.+|-+.|-++||+.+-.-.|+- -.=|..+|+.+ .++ ..-|.++..-|.+|..- + +|.|+
T Consensus 217 ~PleDy~~Lmkr~v~t~~iv~d~i~~~~~~ki~~~ar~vIw~LLF~~~~~~e~~eKaa~lLqeyk~da~fygP~~YNeWI 296 (359)
T 3ism_C 217 NPLEEYRTLMKRFVLTKIIVPDSVHQASVKKIAAAAREIIWKLLFDGTPSAEDQNKAAELLQEYKGDAGFYGPDDYNSWI 296 (359)
T ss_dssp --CHHHHHHHHHHC---CCCCHHHHHHHHHHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHHHHHCTHHHHHHH
T ss_pred CcHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHhhccccCCchHhHHH
Confidence 345899999999999999999987 88888888643 122 12278888989888543 3 47787
Q ss_pred hhhcc
Q 046543 390 YEYMH 394 (428)
Q Consensus 390 a~l~~ 394 (428)
..||.
T Consensus 297 vklrd 301 (359)
T 3ism_C 297 FNLRD 301 (359)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77653
Done!