Query 046543
Match_columns 428
No_of_seqs 117 out of 677
Neff 7.2
Searched_HMMs 13730
Date Mon Mar 25 23:17:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046543.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/046543hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1eg3a2 a.39.1.7 (A:210-306) D 20.5 68 0.0049 23.4 4.9 53 71-125 3-77 (97)
2 d1v54g_ f.23.2.1 (G:) Mitochon 19.6 33 0.0024 24.6 2.8 23 400-422 15-37 (84)
3 d2i4ra1 c.149.1.1 (A:4-79) V-t 15.1 33 0.0024 23.9 1.8 23 35-57 54-76 (76)
4 d1wpga4 f.33.1.1 (A:1-124,A:24 10.8 72 0.0053 29.6 3.4 33 392-424 401-437 (472)
5 d1v8ca2 d.129.5.1 (A:88-165) M 9.0 51 0.0037 22.2 1.0 19 282-300 48-69 (78)
6 d2outa1 a.140.3.2 (A:94-131) U 7.2 49 0.0036 19.1 0.2 15 257-271 6-20 (38)
7 d1nrjb_ c.37.1.8 (B:) Signal r 7.1 83 0.0061 24.6 1.8 19 48-66 1-19 (209)
8 d1awca_ a.4.5.21 (A:) GA bindi 6.7 2.1E+02 0.016 21.0 3.8 61 348-411 32-95 (110)
9 d1nl1a1 g.14.1.1 (A:66-147) Pr 5.2 74 0.0054 22.0 0.3 11 390-400 43-53 (82)
10 d1k94a_ a.39.1.8 (A:) Grancalc 5.0 1.7E+02 0.013 22.5 2.6 38 89-126 87-132 (165)
No 1
>d1eg3a2 a.39.1.7 (A:210-306) Dystrophin {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.47 E-value=68 Score=23.44 Aligned_cols=53 Identities=9% Similarity=0.283 Sum_probs=32.8
Q ss_pred HHHHHHHHHHhhccCCCCC----CHHHHHHHHh---------------hhHHHHhcccC---CCCCCChhHHHHHHH
Q 046543 71 TMKWKCMQDLLRRSRDPHL----KWREIVDAVA---------------PLKDHARLCYA---GSIDLDDHEFIEVLV 125 (428)
Q Consensus 71 ~~K~~~~~~~l~r~~~~~~----~~~~~~~~i~---------------~~e~~~R~~Y~---e~~~~~~~ef~~Mml 125 (428)
+.|.||+-+.+... .|. .++.+++.+. ..|..+|+|+. ..-+++.++|++-|.
T Consensus 3 ~dKyRYlF~qisd~--~g~~~~~kl~~lL~d~lqlP~~vgE~~sFG~s~ie~sv~sCF~~~~~~~~i~~~~FL~wl~ 77 (97)
T d1eg3a2 3 EDKYRYLFKQVASS--TGFCDQRRLGLLLHDSIQIPRQLGEVASFGGSNIEPSVRSCFQFANNKPEIEAALFLDWMR 77 (97)
T ss_dssp HHHHHHHHHHHSCT--TSCBCHHHHHHHHHHHHHHHHHTTCGGGGTCSCCHHHHHHHHHHTTTCSCBCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC--CCCCcHHHHHHHHHHHHHHHHHhCcccccCCCcchHHHHHHHhccCCCCcccHHHHHHHHH
Confidence 35889998888773 332 3555554432 34778888884 233567777765544
No 2
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=19.60 E-value=33 Score=24.58 Aligned_cols=23 Identities=13% Similarity=0.252 Sum_probs=19.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhh
Q 046543 400 PWAVVSQVVGTILLILTFLQTLF 422 (428)
Q Consensus 400 pW~~is~~aA~~ll~lt~~Qtv~ 422 (428)
-|+-||+++|+-+++++.+.++.
T Consensus 15 lWkkis~~va~P~i~l~~~n~~~ 37 (84)
T d1v54g_ 15 TWRFLTFGLALPSVALCTLNSWL 37 (84)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 48999999999999999888763
No 3
>d2i4ra1 c.149.1.1 (A:4-79) V-type ATP synthase subunit F, AtpF {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=15.05 E-value=33 Score=23.86 Aligned_cols=23 Identities=35% Similarity=0.372 Sum_probs=19.9
Q ss_pred eecCchhhcCCCCCcccceeeec
Q 046543 35 FKTPKVLFRHNENAYIPRAFSFG 57 (428)
Q Consensus 35 ~rVP~~lr~~n~~aY~P~~VsIG 57 (428)
-++|+.+++.-.+.-.|.++.||
T Consensus 54 ~~i~~~i~~~~~~~~~P~Vi~Ig 76 (76)
T d2i4ra1 54 KKLPPVLRREIDEKVEPTFVSVG 76 (76)
T ss_dssp TTSCHHHHTTTTTCCSSEEEEEC
T ss_pred HHhhHHHHHHHhcCCCCEEEecC
Confidence 46788898887888899999998
No 4
>d1wpga4 f.33.1.1 (A:1-124,A:240-343,A:751-994) Calcium ATPase, transmembrane domain M {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}
Probab=10.82 E-value=72 Score=29.55 Aligned_cols=33 Identities=18% Similarity=0.183 Sum_probs=22.0
Q ss_pred hcccccCchhHHHHHHHHHHHHHHHH----HHHhhhc
Q 046543 392 YMHRYCGSPWAVVSQVVGTILLILTF----LQTLFSS 424 (428)
Q Consensus 392 l~~~yf~npW~~is~~aA~~ll~lt~----~Qtv~sv 424 (428)
+++..|+|+|..++++.++++.++.+ +|.++..
T Consensus 401 ~~~~~~~N~~l~~av~i~~~l~~~i~yiP~l~~vf~~ 437 (472)
T d1wpga4 401 MRMPPWVNIWLLGSICLSMSLHFLILYVDPLPMIFKL 437 (472)
T ss_dssp TTSCGGGCHHHHHHHHHHHHHHHHHHHSTTTHHHHTC
T ss_pred hhcCccccHHHHHHHHHHHHHHHHHHHhhHHHHHHcc
Confidence 45677899999998887766444332 5555543
No 5
>d1v8ca2 d.129.5.1 (A:88-165) MoaD-related protein, C-terminal domain {Thermus thermophilus [TaxId: 274]}
Probab=9.04 E-value=51 Score=22.25 Aligned_cols=19 Identities=32% Similarity=0.634 Sum_probs=13.3
Q ss_pred CcEEEcCcEEee---cchhhHH
Q 046543 282 NGALEMPPLIIH---KTTETLF 300 (428)
Q Consensus 282 ~G~L~IP~L~id---~~T~~ll 300 (428)
-|.|+||+|.+. +..++++
T Consensus 48 vgsl~ip~lrvevege~ae~w~ 69 (78)
T d1v8ca2 48 VGSLSIPQLRVEVEGEEAERWF 69 (78)
T ss_dssp ETTEEEEEEEEEEEETTHHHHH
T ss_pred ecceecceEEEEeccHHHHHHH
Confidence 489999999875 3444554
No 6
>d2outa1 a.140.3.2 (A:94-131) Uncharacterized protein HI1507 in Mu-like prophage FluMu region {Haemophilus influenzae [TaxId: 727]}
Probab=7.22 E-value=49 Score=19.13 Aligned_cols=15 Identities=13% Similarity=0.468 Sum_probs=11.7
Q ss_pred HHHHHcCcEEEecCC
Q 046543 257 MKMQQSGIKLQRVNS 271 (428)
Q Consensus 257 teL~~aGVkfk~~~~ 271 (428)
.+|-+.||.||.+.+
T Consensus 6 aqltergitfkqsat 20 (38)
T d2outa1 6 AQLTERGITFKQSAT 20 (38)
T ss_dssp HHHHHHTCCCSSSCC
T ss_pred HHHHHcCceeeccch
Confidence 477889999987654
No 7
>d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=7.09 E-value=83 Score=24.63 Aligned_cols=19 Identities=26% Similarity=0.413 Sum_probs=17.3
Q ss_pred CcccceeeecCCCCCChhh
Q 046543 48 AYIPRAFSFGPFHWKDEQL 66 (428)
Q Consensus 48 aY~P~~VsIGPyH~g~~~L 66 (428)
.|.|.++=+||-..|+..|
T Consensus 1 ~~~p~V~lvG~~n~GKTSL 19 (209)
T d1nrjb_ 1 SYQPSIIIAGPQNSGKTSL 19 (209)
T ss_dssp CCCCEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 5999999999999998866
No 8
>d1awca_ a.4.5.21 (A:) GA binding protein (GABP) alpha {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.70 E-value=2.1e+02 Score=21.03 Aligned_cols=61 Identities=8% Similarity=0.179 Sum_probs=42.0
Q ss_pred CCchH-HHHHHHhccCcccCchhHHHHHHHHHhhhcCch-hhhh-hhhcccccCchhHHHHHHHHHH
Q 046543 348 NPGDV-THFFKILYNDAHLTNFYYQALLQEVKMYCGHWS-SRLR-YEYMHRYCGSPWAVVSQVVGTI 411 (428)
Q Consensus 348 g~de~-a~lFn~L~~~~~~~~~y~~~v~~~l~~~~~~r~-~~~~-a~l~~~yf~npW~~is~~aA~~ 411 (428)
-+.++ |+++-.--+.-. -+ |.++.+.|..||++.- .+.. ..+..+|..+||..++.-++-+
T Consensus 32 ~d~e~VA~lWG~~Knk~~--M~-YeklSRaLRyYY~~~il~Kv~g~rl~Y~F~~d~~~~~~~~~~~l 95 (110)
T d1awca_ 32 NQPELVAQKWGQRKNKPT--MN-YEKLSRALRYYYDGDMICKVQGKRFVYKFVCDLKTLIGYSAAEL 95 (110)
T ss_dssp SSHHHHHHHHHHHHTCTT--CC-HHHHHHHHHGGGGSSSEEECTTSTTEEEECSCHHHHTSSCHHHH
T ss_pred CCHHHHHHHHHHhhCCCc--cc-HHHHHHHHHHHHhcccEEecCCcEEEEeccCCHHHHhCCCHHHH
Confidence 45667 999965544333 36 7899999999999863 2222 3467788889999876555543
No 9
>d1nl1a1 g.14.1.1 (A:66-147) Prothrombin {Cow (Bos taurus) [TaxId: 9913]}
Probab=5.20 E-value=74 Score=22.05 Aligned_cols=11 Identities=18% Similarity=0.715 Sum_probs=8.6
Q ss_pred hhhcccccCch
Q 046543 390 YEYMHRYCGSP 400 (428)
Q Consensus 390 a~l~~~yf~np 400 (428)
+.|.++|+|||
T Consensus 43 ~~l~~NyCRNP 53 (82)
T d1nl1a1 43 ADLRENFCRNP 53 (82)
T ss_dssp SCCCTTCCBCT
T ss_pred cCcccccccCC
Confidence 45678999987
No 10
>d1k94a_ a.39.1.8 (A:) Grancalcin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.05 E-value=1.7e+02 Score=22.45 Aligned_cols=38 Identities=11% Similarity=0.124 Sum_probs=23.8
Q ss_pred CCHHHHHHHHhhh--------HHHHhcccCCCCCCChhHHHHHHHH
Q 046543 89 LKWREIVDAVAPL--------KDHARLCYAGSIDLDDHEFIEVLVL 126 (428)
Q Consensus 89 ~~~~~~~~~i~~~--------e~~~R~~Y~e~~~~~~~ef~~Mmll 126 (428)
.+.+++..++... .+.+-..|+.+-.++=++|+..|+.
T Consensus 87 I~~~El~~~l~~~G~~l~~~~~~~l~~~~d~~g~i~~~eFi~~~~~ 132 (165)
T d1k94a_ 87 VEHHELRQAIGLMGYRLSPQTLTTIVKRYSKNGRIFFDDYVACCVK 132 (165)
T ss_dssp CCHHHHHHHHHHTTCCCCHHHHHHHHHHHCBTTBCBHHHHHHHHHH
T ss_pred EcHHHHHHHHHHhhhcCCHHHHHHHHHHcCCCCcCcHHHHHHHHHH
Confidence 4677777776532 2334445655546888999986654
Done!