BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046545
(93 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ROE|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Vitro
pdb|2ROG|A Chain A, Solution Structure Of Thermus Thermophilus Hb8 Ttha1718
Protein In Living E. Coli Cells
Length = 66
Score = 32.3 bits (72), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 20 LRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADFWS 68
+ K L K+ G+EKVEV + +V G A +++A+ G KA+ +
Sbjct: 18 VTKALKKVPGVEKVEVSLEKGEALVEGTADPKALVQAVEEEGYKAEVLA 66
>pdb|3ID7|A Chain A, Crystal Structure Of Renal Dipeptidase From Streptomyces
Coelicolor A3(2)
pdb|3K5X|A Chain A, Crystal Structure Of Dipeptidase From Streptomics
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Ala-D-Asp At 1.4a Resolution.
pdb|3ITC|A Chain A, Crystal Structure Of Sco3058 With Bound Citrate And
Glycerol
pdb|3ISI|X Chain X, Crystal Structure Of Sco3058 With Bound Inhibitor
L-Ala-L-Asp Phosphinodipeptide
pdb|3S2J|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Ala
pdb|3S2L|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Leu-D-Glu
pdb|3S2M|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Phe-D-Asp
pdb|3S2N|A Chain A, Crystal Structure Of Dipeptidase From Streptomyces
Coelicolor Complexed With Phosphinate Pseudodipeptide
L-Tyr-D-Asp
Length = 400
Score = 29.3 bits (64), Expect = 0.59, Method: Composition-based stats.
Identities = 12/38 (31%), Positives = 21/38 (55%)
Query: 31 EKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADFWS 68
E+V D +++ + AH + L +R GG+ A +WS
Sbjct: 29 EQVRYDLDARDIAADQSAHLHTDLARLRSGGVGAQYWS 66
>pdb|1R27|A Chain A, Crystal Structure Of Nargh Complex
pdb|1R27|C Chain C, Crystal Structure Of Nargh Complex
pdb|1SIW|A Chain A, Crystal Structure Of The Apomolybdo-Narghi
pdb|1Y4Z|A Chain A, The Crystal Structure Of Nitrate Reductase A, Narghi, In
Complex With The Q-Site Inhibitor Pentachlorophenol
pdb|1Y5I|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a
pdb|1Y5L|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-H66y
pdb|1Y5N|A Chain A, The Crystal Structure Of The Narghi Mutant Nari-K86a In
Complex With Pentachlorophenol
Length = 1246
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 115 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 171
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 172 SNVYTIKNYGPDRVAGFS 189
>pdb|3EGW|A Chain A, The Crystal Structure Of The Narghi Mutant Narh - C16a
Length = 1244
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 115 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 171
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 172 SNVYTIKNYGPDRVAGFS 189
>pdb|3IR7|A Chain A, Crystal Structure Of Narghi Mutant Narg-R94s
Length = 1247
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 116 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 172
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 173 SNVYTIKNYGPDRVAGFS 190
>pdb|3IR6|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49s
Length = 1247
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 116 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 172
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 173 SNVYTIKNYGPDRVAGFS 190
>pdb|3IR5|A Chain A, Crystal Structure Of Narghi Mutant Narg-H49c
Length = 1247
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 116 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 172
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 173 SNVYTIKNYGPDRVAGFS 190
>pdb|1Q16|A Chain A, Crystal Structure Of Nitrate Reductase A, Narghi, From
Escherichia Coli
Length = 1247
Score = 25.8 bits (55), Expect = 5.7, Method: Composition-based stats.
Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 7/78 (8%)
Query: 18 KRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR-RGGLKADFWSAQNELLSA 76
KRL K + + + V+A + + A + K K R RGG W NEL++A
Sbjct: 116 KRLMKMWREAKALHSDPVEAWAS---IIEDADKAKSFKQARGRGGFVRSSWQEVNELIAA 172
Query: 77 ---YASASYGNLRFNNFN 91
Y +YG R F+
Sbjct: 173 SNVYTIKNYGPDRVAGFS 190
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,440,445
Number of Sequences: 62578
Number of extensions: 78500
Number of successful extensions: 230
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 223
Number of HSP's gapped (non-prelim): 13
length of query: 93
length of database: 14,973,337
effective HSP length: 60
effective length of query: 33
effective length of database: 11,218,657
effective search space: 370215681
effective search space used: 370215681
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)