BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046545
(93 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9SZN7|HIP26_ARATH Heavy metal-associated isoprenylated plant protein 26
OS=Arabidopsis thaliana GN=HIPP26 PE=1 SV=1
Length = 153
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 4/85 (4%)
Query: 2 ELETVELKVEM-VGIHEKRLRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAI-RR 59
+L+TVE+KV+M E+++R+ + ++G+ V ++ + KV V GY NK++ + R
Sbjct: 24 QLQTVEIKVKMDCEGCERKVRRSVEGMKGVSSVTLEPKAHKVTVVGYVDPNKVVARMSHR 83
Query: 60 GGLKADFWS--AQNELLSAYASASY 82
G K + W + + YA+ Y
Sbjct: 84 TGKKVELWPYVPYDVVAHPYAAGVY 108
>sp|Q6L403|R1B17_SOLDE Putative late blight resistance protein homolog R1B-17 OS=Solanum
demissum GN=R1B-17 PE=3 SV=1
Length = 1312
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 19/55 (34%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 13 VGIHEKRLR--KCLSKLRGIEKVEVDANSQKVVVTGYAHRNK---ILKAIRRGGL 62
VG+++ RL K L+ L GI+ V D N +K+ VTG N+ ++ +R+ G+
Sbjct: 1257 VGVNKGRLETFKRLAPLPGIKSVAFDFNKKKLTVTGDMDANEVQLVVSKLRKRGM 1311
>sp|B0K3H0|MURG_THEPX UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Thermoanaerobacter sp. (strain X514)
GN=murG PE=3 SV=1
Length = 364
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 31 EKVEVDANSQKVVVTGYAHRNKILKAIRRGGLK-ADFWSAQNELLSAYASASYGNLRFNN 89
E V+ N +KVVVTG R ++LK + GLK F+S + ++S S + F
Sbjct: 147 ESVKYFKNKEKVVVTGNPIRRELLKVTKEEGLKNLGFYSDKPLIVSVGGSRGAEKINFTM 206
Query: 90 FNF 92
F
Sbjct: 207 VEF 209
>sp|B0K8K7|MURG_THEP3 UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
pyrophosphoryl-undecaprenol N-acetylglucosamine
transferase OS=Thermoanaerobacter pseudethanolicus
(strain ATCC 33223 / 39E) GN=murG PE=3 SV=1
Length = 364
Score = 29.6 bits (65), Expect = 5.5, Method: Composition-based stats.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 31 EKVEVDANSQKVVVTGYAHRNKILKAIRRGGLK-ADFWSAQNELLSAYASASYGNLRFNN 89
E V+ N +KVVVTG R ++LK + GLK F+S + ++S S + F
Sbjct: 147 ESVKYFKNKEKVVVTGNPIRRELLKVTKEEGLKNLGFYSDKPLIVSVGGSRGAEKINFTM 206
Query: 90 FNF 92
F
Sbjct: 207 VEF 209
>sp|Q6BZU2|CCS1_YARLI Superoxide dismutase 1 copper chaperone OS=Yarrowia lipolytica
(strain CLIB 122 / E 150) GN=CCS1 PE=3 SV=1
Length = 234
Score = 29.3 bits (64), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 20 LRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIRRGGLKA 64
+++ L+ ++GIE V+ Q + VTG + ++I+KA++ G A
Sbjct: 20 VKQALANVQGIESVDCKLVDQLISVTGTSAPSQIVKAVQNIGKDA 64
>sp|Q6CIG2|CCS1_KLULA Superoxide dismutase 1 copper chaperone OS=Kluyveromyces lactis
(strain ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 /
NRRL Y-1140 / WM37) GN=CCS1 PE=3 SV=1
Length = 245
Score = 29.3 bits (64), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 10/73 (13%)
Query: 20 LRKCLSKLRGIEKVEVDANSQKVVVTGYAHRNKILKAIR--------RGGLKADFWSAQN 71
++KCL + GI+ V D + V G+A + I+ A++ RG K + SA
Sbjct: 26 IQKCLKDVNGIKNVTFDIKDNLMNVEGHAAPSAIINALKNCGRDGIIRGTGKPN--SAAV 83
Query: 72 ELLSAYASASYGN 84
+L Y + + N
Sbjct: 84 SILGQYTTGPFEN 96
>sp|Q8XUZ9|RPOC_RALSO DNA-directed RNA polymerase subunit beta' OS=Ralstonia solanacearum
(strain GMI1000) GN=rpoC PE=3 SV=1
Length = 1409
Score = 28.9 bits (63), Expect = 8.8, Method: Composition-based stats.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 27 LRGIE--------KVEVDANSQKVVVTGYAHRNKILKAIRRGGLKADF 66
LRGI+ + E+ A + + +A R K+L+A +R G+K D+
Sbjct: 190 LRGIDIEKQIETIRAELQATGSEAKIKKFAKRLKVLEAFQRSGIKPDW 237
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,453,565
Number of Sequences: 539616
Number of extensions: 975151
Number of successful extensions: 2848
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 2840
Number of HSP's gapped (non-prelim): 13
length of query: 93
length of database: 191,569,459
effective HSP length: 63
effective length of query: 30
effective length of database: 157,573,651
effective search space: 4727209530
effective search space used: 4727209530
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)