BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046547
(343 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|225446521|ref|XP_002278909.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06270
[Vitis vinifera]
gi|302143379|emb|CBI21940.3| unnamed protein product [Vitis vinifera]
Length = 343
Score = 477 bits (1227), Expect = e-132, Method: Compositional matrix adjust.
Identities = 235/343 (68%), Positives = 275/343 (80%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M IGA K CRSL +F L Q SS+ S++S +TLEE+++AAV++K YQ+IP+LL S EE
Sbjct: 1 MAIGATKLCRSLFHFHYSLRQISSIHSITSSQTLEESIKAAVESKTYQKIPDLLISLEET 60
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
C NPNPFSFLS F QN R +V+DE+L+SFIPLRPRSRP+IAY LLS+TLQS +PLPLAL
Sbjct: 61 CLNPNPFSFLSTFSQNLRTQVVDEILQSFIPLRPRSRPQIAYACLLSFTLQSANPLPLAL 120
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
AILQRTLRSGC+PVPQ LLLSSAWL RR QS SV++IL EM+SIGY+PDCGTCNYL+ S
Sbjct: 121 AILQRTLRSGCIPVPQTHLLLSSAWLSRRRQSHSVSNILSEMQSIGYYPDCGTCNYLILS 180
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LCAIDQLVEA VLK M C+PDLE Y VIGAM R+T DA E+MKEMV +GL P
Sbjct: 181 LCAIDQLVEAVIVLKSMGQVGCIPDLEGYGSVIGAMCAMRRTTDATELMKEMVAKIGLTP 240
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
RQG V+ + AALRA +E+WKAVEMIEFLE + GF YE V+EGCL C E++LAGK V
Sbjct: 241 RQGTVLNLVAALRAKKEIWKAVEMIEFLEGEDFNAGFASYESVLEGCLACHEFVLAGKVV 300
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
MGMT RGFIPYI VRQKVVEGLA +GEWKLA VRQRFA+L+S
Sbjct: 301 MGMTARGFIPYIGVRQKVVEGLANLGEWKLALAVRQRFADLRS 343
>gi|356543880|ref|XP_003540386.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06270-like [Glycine max]
Length = 342
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 222/343 (64%), Positives = 275/343 (80%), Gaps = 1/343 (0%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M++ A+ R L+ FRP L + RS+SSL+ LE+ VRA V+AK+Y +IPELL S +A
Sbjct: 1 MVMVAMMHYRFLLCFRPILNRCPLGRSVSSLQNLEQAVRAEVEAKNYIKIPELLIS-SDA 59
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
CQ NPFSF S+FPQN R++++DEML+S IP+RPRS+ ++ Y YLLSYTLQS HP PLAL
Sbjct: 60 CQISNPFSFFSSFPQNIRVQIVDEMLQSLIPIRPRSKAQLTYSYLLSYTLQSSHPFPLAL 119
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
A+LQRTLRSGCVPVPQ +LLSSAWL++ C S SVA+ILL+M+SIGYHPDCGTCNYL+SS
Sbjct: 120 AVLQRTLRSGCVPVPQTHVLLSSAWLDQHCLSHSVANILLQMQSIGYHPDCGTCNYLLSS 179
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LCA+DQL EA KVL+GM A C+PD SY VIGAM RKT A+++MK+MV+ GL P
Sbjct: 180 LCAVDQLEEAVKVLRGMGGAGCIPDSSSYGAVIGAMCRVRKTAKALDLMKQMVVQYGLTP 239
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
QG ++K+ AALRANRE+WKAVEMIEFLE++G +GF+ YE+V+EGCLE REY+LA K
Sbjct: 240 GQGTLVKLLAALRANREIWKAVEMIEFLEKEGNSVGFESYELVIEGCLEKREYVLAAKVA 299
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
GMTERGFIPYI+VRQK++EGLA + EW LA VRQRFA LKS
Sbjct: 300 TGMTERGFIPYIRVRQKIIEGLASIDEWNLACAVRQRFAALKS 342
>gi|224122026|ref|XP_002330712.1| predicted protein [Populus trichocarpa]
gi|222872316|gb|EEF09447.1| predicted protein [Populus trichocarpa]
Length = 341
Score = 434 bits (1117), Expect = e-119, Method: Compositional matrix adjust.
Identities = 215/340 (63%), Positives = 263/340 (77%), Gaps = 4/340 (1%)
Query: 5 AIKSCRSLVNFRPCLLQFSSLRSMSSLRT-LEETVRAAVDAKDYQQIPELLGSFEEACQN 63
A K +SL+ + LLQF R++S+ T LEET++AAV+ K Y + P+L SF+++ N
Sbjct: 5 ATKLSKSLLPYSKILLQF---RTLSTSHTPLEETLKAAVECKSYSKFPDLFDSFKQSNNN 61
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
P+PFSFLS FP N R +VIDE+++S IP+RPR R I Y LLSYTLQ+ + L+LAI+
Sbjct: 62 PSPFSFLSTFPFNLRTQVIDEIIQSLIPIRPRFRNFIVYSSLLSYTLQNSNLFSLSLAII 121
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
Q TLRSGC+PVPQ + LSSAWL+RR + QSV DIL+EMKSIGY+PDCG CNY+V SLC
Sbjct: 122 QCTLRSGCLPVPQTHVSLSSAWLDRRREGQSVGDILMEMKSIGYNPDCGLCNYIVLSLCN 181
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+DQL+EA KVLKGM C PD ESY IVIGAM RK +DA+EMMKEMV+ M L PRQG
Sbjct: 182 VDQLIEAVKVLKGMKQVGCFPDWESYGIVIGAMCRVRKCDDAIEMMKEMVVRMRLCPRQG 241
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+V+KV AALRANREM KA EMIEFLE++G +GF+ YE+VVEGCLEC+++ LA K VMGM
Sbjct: 242 VVVKVLAALRANREMRKAGEMIEFLEKEGYGVGFESYELVVEGCLECKDFFLAAKVVMGM 301
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
TE+GFIPYIKVRQKVVEGL GEWKLA VR+RFA L S
Sbjct: 302 TEKGFIPYIKVRQKVVEGLIDAGEWKLACTVRERFAALSS 341
>gi|297848900|ref|XP_002892331.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338173|gb|EFH68590.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 343
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 257/330 (77%), Gaps = 3/330 (0%)
Query: 14 NFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNF 73
+F C F RS+SS +E+ ++ AV+ K+Y +IPEL+ S +E QN FSFLS F
Sbjct: 17 SFNAC---FPFFRSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSMLFSFLSAF 73
Query: 74 PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP 133
HRI+VIDE+L+SF+P+RPRS PKI Y LL+Y LQS PLPL+ AILQRTLRSGC+P
Sbjct: 74 QHQHRIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLP 133
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
PQ +LLLS AWLERR SQSVADI+ EMK IGY PD GTCNYLVSSLCA+D+L EA KV
Sbjct: 134 NPQTQLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKV 193
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
++ M +A C+PD+ESY VI ++ ARKTND V+++KEMV G+ PR+GM+ KVAAALR
Sbjct: 194 VEEMGAAGCIPDVESYGAVINSLCLARKTNDVVKIVKEMVSKAGISPRKGMLTKVAAALR 253
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
ANRE+WKA+EMIEF+E + P+ F+ YEVVVEGCLE REYILAGK VM MT+RGFIPYIK
Sbjct: 254 ANREIWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILAGKMVMRMTDRGFIPYIK 313
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
VRQKVVE L +GEWKLA VRQR +EL+S
Sbjct: 314 VRQKVVERLISIGEWKLACTVRQRLSELRS 343
>gi|18390636|ref|NP_563765.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75264068|sp|Q9LNC0.1|PPR16_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g06270
gi|8844132|gb|AAF80224.1|AC025290_13 Contains similarity to an unknown protein F23N19.4 gi|6630464 from
Arabidopsis thaliana gb|AC007190 and contains multiple
PPR PF|01535 repeats. EST gb|T44174 comes from this gene
[Arabidopsis thaliana]
gi|17529194|gb|AAL38823.1| unknown protein [Arabidopsis thaliana]
gi|20465473|gb|AAM20196.1| unknown protein [Arabidopsis thaliana]
gi|21536601|gb|AAM60933.1| unknown [Arabidopsis thaliana]
gi|332189849|gb|AEE27970.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 343
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 259/330 (78%), Gaps = 3/330 (0%)
Query: 14 NFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNF 73
+F C+ F RS+SS +E+ ++ AV+ K+Y +IPEL+ S +E QN FSFLS F
Sbjct: 17 SFDVCIPFF---RSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAF 73
Query: 74 PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP 133
++HRI+VIDE+L+SF+P+RPRS PKI Y LL+Y LQS PLPL+ AILQRTLRSGC+P
Sbjct: 74 QRHHRIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLP 133
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
PQ LLLS AWLERR SQSVADI+ EMK IGY PD GTCNYLVSSLCA+D+L EA KV
Sbjct: 134 NPQTHLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKV 193
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
++ MS+A C+PD+ESY VI ++ ARKT D V+++KEMV G+ PR+GM+ KVAAALR
Sbjct: 194 VEEMSAAGCIPDVESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALR 253
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
ANRE+WKA+EMIEF+E + P+ F+ YEVVVEGCLE REYILAGK VM MT+RGFIPYIK
Sbjct: 254 ANREIWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIK 313
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
VRQKVVE L +GEWKLA VRQR +EL+S
Sbjct: 314 VRQKVVERLINIGEWKLACTVRQRVSELRS 343
>gi|449443213|ref|XP_004139374.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06270-like [Cucumis sativus]
gi|449483078|ref|XP_004156487.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g06270-like [Cucumis sativus]
Length = 343
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 200/343 (58%), Positives = 263/343 (76%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M IG K+ L+NF L Q+SS+ S+S +TL+++++AAV++K Y+++P+L S +EA
Sbjct: 1 MNIGRTKTSAFLLNFHHFLGQYSSIHSISPSQTLQDSIKAAVESKSYKKLPDLFPSLQEA 60
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
C NPN F FLS FP N R +V+DE+L+S I +RPRS+ + + LL YTLQS P PL+L
Sbjct: 61 CHNPNLFLFLSTFPLNLRTQVVDEILQSLISIRPRSKSQFVHGSLLFYTLQSPSPFPLSL 120
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+LQR L SGCVP PQ LLSSAWL++R Q++SVA+IL++M+SIGY PD CNYL+SS
Sbjct: 121 PVLQRILHSGCVPSPQTHFLLSSAWLKQRSQAKSVANILMDMQSIGYKPDSNICNYLISS 180
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC+I +L EA +VLKGM A C+PDLESY +I A + R+T+ AVE++KEMV+ + LMP
Sbjct: 181 LCSIGELAEAFQVLKGMGGAGCIPDLESYGTLIHAATAVRRTDKAVELLKEMVVKVKLMP 240
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
RQG + V AALR NRE+ +AVE+IE LER +GF+ YE++VEGCLECREYILAGK
Sbjct: 241 RQGTITNVVAALRTNREVRRAVEIIELLERDSHDVGFESYELLVEGCLECREYILAGKVT 300
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
MGMT+RGFIPYIKVRQ+VVEGLAG+GE +LA+ VR+RF EL S
Sbjct: 301 MGMTDRGFIPYIKVRQEVVEGLAGIGEVELASAVRRRFVELGS 343
>gi|255568347|ref|XP_002525148.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535607|gb|EEF37275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 354
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/335 (62%), Positives = 258/335 (77%), Gaps = 4/335 (1%)
Query: 10 RSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFE-EACQNPNPFS 68
R+ + FS RS+SSL E +++AA++ + YQ+IP+LL S + ++ NPNPFS
Sbjct: 23 RAAIKLHQIAFNFSLCRSISSL---ERSIKAAIETESYQEIPDLLISSKIQSLHNPNPFS 79
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
FLS FP N R +ID++L+SFI +RP SR K+ Y LLS+TLQS +PLPLALAILQR R
Sbjct: 80 FLSTFPLNQRTHIIDKILQSFITIRPHSRLKLVYSCLLSHTLQSPNPLPLALAILQRGFR 139
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
SG +P PQIRL L+SAWL R Q +VA ILLEM+SIGY+PDCG CNY++ SLC++DQL
Sbjct: 140 SGFMPEPQIRLFLTSAWLNTRVQLHTVAGILLEMESIGYYPDCGICNYIIYSLCSVDQLP 199
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA KVLKGMS A CVPDLE Y VIG+MS ARKT DAVE+MKEMV+ +GL PRQG ++K+
Sbjct: 200 EAVKVLKGMSGAGCVPDLECYDTVIGSMSKARKTVDAVEIMKEMVVKVGLNPRQGTMMKL 259
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
AAALRANRE+ AVE+IEFLER+GC +GF Y++V+EGCLE +EYILA K VM MT++GF
Sbjct: 260 AAALRANREILIAVELIEFLEREGCVVGFGCYQLVLEGCLERKEYILAAKVVMRMTDKGF 319
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
IPYIKVRQKVVEGL W +A VRQRFAEL S
Sbjct: 320 IPYIKVRQKVVEGLIDADAWNIACTVRQRFAELSS 354
>gi|295828236|gb|ADG37787.1| AT1G06270-like protein [Neslia paniculata]
Length = 182
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 122/182 (67%), Positives = 146/182 (80%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P P LLLS AWLERR SQSVADI+ EMK +GY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNPHTHLLLSDAWLERRRGSQSVADIINEMKLVGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+ PR+GM+ KVA+ALRANRE WKA+EMIEF+E + P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 GISPRKGMLTKVASALRANRETWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|345288407|gb|AEN80695.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288409|gb|AEN80696.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288411|gb|AEN80697.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288413|gb|AEN80698.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288415|gb|AEN80699.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288417|gb|AEN80700.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288419|gb|AEN80701.1| AT1G06270-like protein, partial [Capsella rubella]
gi|345288421|gb|AEN80702.1| AT1G06270-like protein, partial [Capsella rubella]
Length = 182
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 147/182 (80%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P PQ LLLS AWL+RR SQSVADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNPQTHLLLSDAWLQRRRGSQSVADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRANRE WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANRETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEIREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828230|gb|ADG37784.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 123/182 (67%), Positives = 145/182 (79%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC P Q LLLS AWLERR SQSVADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCXPNXQTHLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRANRE WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANRETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828228|gb|ADG37783.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 122/182 (67%), Positives = 145/182 (79%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P PQ LLLS AWLERR S SVADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNPQTHLLLSDAWLERRRGSXSVADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRAN E WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANXETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828224|gb|ADG37781.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/182 (67%), Positives = 145/182 (79%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P Q LLLS AWLERR SQSVADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNXQTHLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRAN E WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANXETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828234|gb|ADG37786.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 144/182 (79%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P PQ LLLS WLERR SQS ADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNPQTHLLLSDXWLERRRGSQSXADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRAN E WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANXETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828232|gb|ADG37785.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 121/182 (66%), Positives = 143/182 (78%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC P Q LLLS WLERR SQS ADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCXPNQQTHLLLSDXWLERRRGSQSXADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRANRE WKA+EMIEF+E +G P+ F+ YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANRETWKAIEMIEFVESRGYPVEFESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|295828226|gb|ADG37782.1| AT1G06270-like protein [Capsella grandiflora]
Length = 182
Score = 230 bits (587), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/182 (65%), Positives = 142/182 (78%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
PL+ AILQRTLRSGC+P Q LLLS WLERR SQS ADI+ EMK IGY PD GTCNY
Sbjct: 1 PLSFAILQRTLRSGCLPNXQTHLLLSDXWLERRXGSQSXADIINEMKLIGYSPDTGTCNY 60
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LVSSLCA+D+L EA KV++ M +A C+PD+ESY VI ++ ARKTND V ++KEMV
Sbjct: 61 LVSSLCAVDKLDEAIKVVEEMGAAGCIPDVESYGAVINSLCLARKTNDVVNIVKEMVSKA 120
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ PR+GM+ KVA+ALRANRE WKA+EMIEF+E G P+ + YEVVVEGCLE REYILA
Sbjct: 121 RISPRKGMLTKVASALRANRETWKAIEMIEFVESXGYPVEXESYEVVVEGCLEVREYILA 180
Query: 297 GK 298
GK
Sbjct: 181 GK 182
>gi|224130790|ref|XP_002328377.1| predicted protein [Populus trichocarpa]
gi|222838092|gb|EEE76457.1| predicted protein [Populus trichocarpa]
Length = 688
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 69/268 (25%), Positives = 126/268 (47%), Gaps = 15/268 (5%)
Query: 78 RIKVIDEMLESFIPLRPRSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
+IKV E+ + R P I+Y+ L++ S + +A+ + ++ ++GC P
Sbjct: 178 KIKVAVELYNEMV--RSGHEPDVISYNTLINGLCNSGNT-NMAVHVFKKMEQNGCKP--- 231
Query: 137 IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
++ + ++ C+ + V D L EM G PD T N +V LC + QL EA ++
Sbjct: 232 -NVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRL 290
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
K M C PD+ +Y+I+I ++ R NDA + + EMV + G+ P + L
Sbjct: 291 FKRMEQNGCKPDVVTYNIIIDSLYKDRLVNDAADFLSEMV-DQGIPPDVVTYTTILHGLC 349
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
++ +A+ + + +E+KGC Y +++ + R A + + M +RG P
Sbjct: 350 YLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDRGIPPNAV 409
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ G +G+ AT Q F E+
Sbjct: 410 TYSTILHGFCNLGQLDEAT---QLFKEM 434
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 71/341 (20%), Positives = 126/341 (36%), Gaps = 76/341 (22%)
Query: 58 EEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPL 116
+ C+ PN ++ + + +++++ ++ + R P A Y + + L L L
Sbjct: 226 QNGCK-PNVVTYNTIIDSLCKDRLVNDAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQL 284
Query: 117 PLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
A + +R ++GC P V +++ S + +R AD L EM G PD T
Sbjct: 285 NEATRLFKRMEQNGCKPDVVTYNIIIDSLYKDRLVND--AADFLSEMVDQGIPPDVVTYT 342
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE-------- 227
++ LC + QL EA ++ K M C PD+ +Y+ +I ++ R NDA+E
Sbjct: 343 TILHGLCYLGQLNEAIRLFKKMEQKGCKPDVVAYNTIIDSLCKDRLVNDAMEFLSEMVDR 402
Query: 228 ---------------------------MMKEMVLNMGLMP-------------RQGMVIK 247
+ KEMV +MP ++GMV +
Sbjct: 403 GIPPNAVTYSTILHGFCNLGQLDEATQLFKEMV-GRNVMPNTLTFSILVDGLCQEGMVSE 461
Query: 248 VAAALRANRE----------------------MWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E M +A ++ E + KGC Y +++
Sbjct: 462 ARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARKVFEIMVGKGCAPDLHSYNILIN 521
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G R A + M+ + P +++GL VG
Sbjct: 522 GYCNSRRMDKAKALLTQMSVKKLTPNTVTYNTIMKGLCYVG 562
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 14/259 (5%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
N ++ + EM++ IP P + + Y +L + +L L A + + + +P
Sbjct: 390 NDAMEFLSEMVDRGIP--PNA---VTYSTIL-HGFCNLGQLDEATQLFKEMVGRNVMP-- 441
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
L S ++ CQ V++ + M G P+ T N L++ C ++ EA K
Sbjct: 442 --NTLTFSILVDGLCQEGMVSEARWVFETMTEKGVEPNIYTYNALMNGYCLRCKMNEARK 499
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
V + M C PDL SY+I+I +R+ + A ++ +M + L P + L
Sbjct: 500 VFEIMVGKGCAPDLHSYNILINGYCNSRRMDKAKALLTQMSVK-KLTPNTVTYNTIMKGL 558
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ A E+ + + G Y +++ G + A K M E+ P I
Sbjct: 559 CYVGRLLDAQELFKKMCSSGMLPTLMTYSILLNGLCKHGHLDEALKLFKSMKEKKLEPDI 618
Query: 313 KVRQKVVEGLAGVGEWKLA 331
+ ++EG+ G+ ++A
Sbjct: 619 ILYTILIEGMFIGGKLEVA 637
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 91/226 (40%), Gaps = 10/226 (4%)
Query: 119 ALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
ALA R R P P I + L S A ++ Q +V + +M G +
Sbjct: 77 ALASFYRMARMN--PRPSIVEFGKFLGSIAKMK---QYSTVVYLCNQMDLFGVTHTVYSL 131
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L++ LC ++ + A V M PD+ +++ +I + K AVE+ EMV
Sbjct: 132 NILINCLCRLNHVDFAVSVWGKMFKLGIQPDVITFTTLINGVCNEGKIKVAVELYNEMVR 191
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ G P + L + AV + + +E+ GC Y +++ + R
Sbjct: 192 S-GHEPDVISYNTLINGLCNSGNTNMAVHVFKKMEQNGCKPNVVTYNTIIDSLCKDRLVN 250
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M RG P +V GL +G+ AT + +R +
Sbjct: 251 DAMDFLSEMVGRGIPPDAITYNSIVHGLCCLGQLNEATRLFKRMEQ 296
>gi|359495268|ref|XP_003634944.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Vitis vinifera]
Length = 582
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 59/197 (29%), Positives = 93/197 (47%), Gaps = 7/197 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+C + D+L EM+ G P+ T NYL+SSLC ++ EA VL+ M A C PD
Sbjct: 381 RKCNFKEARDLLDEMRLFGCRPNAKTYNYLLSSLCKNNRDDEACNVLEEMQEAGCPPDAL 440
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
++ I I K + A++ + +MV + GL PR + AA ++ + E E+
Sbjct: 441 TFEIFIYYTYRLGKLDFAIKFLDQMV-SRGLEPR---LTTHAAFIKGYFHSRRYEEAYEY 496
Query: 268 LERKGCPIGFQG---YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+ G + Y ++ I A K ++ M E+G P V ++V+E L
Sbjct: 497 VVDSGVTYKWPSNMIYSLLASLHQRNGNLISAQKILIEMIEKGLKPNFSVYKRVLEHLDK 556
Query: 325 VGEWKLATVVRQRFAEL 341
G LA +R RF+ L
Sbjct: 557 SGREDLAGDLRSRFSSL 573
>gi|302799124|ref|XP_002981321.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
gi|300150861|gb|EFJ17509.1| hypothetical protein SELMODRAFT_114398 [Selaginella moellendorffii]
Length = 457
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 86/171 (50%), Gaps = 7/171 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + G P+ T YL+ SLC + EA V +GM++ C P++ SYSI+I + +
Sbjct: 42 DMLAAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ 101
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGF 277
K ++A E++ EM+ + G P V+ + L +M K E ++ R +GCP
Sbjct: 102 KVDEAAELLNEMI-DGGHQPN---VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
Y V+++G + + A + M E+G IP + ++ G + GE+
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 11/230 (4%)
Query: 104 YLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---AD 157
Y Y L+SL A ++ + GC P + S + C+ Q V A+
Sbjct: 53 YTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP----NVFSYSILIAGLCRGQKVDEAAE 108
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P+ T L+S LC + +L EA + M C PD Y+++I S
Sbjct: 109 LLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFS 168
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A + +EM L G +P + + E + + + + R+GC
Sbjct: 169 KKGDMGEAYRLFEEM-LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNI 227
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +++G + + + A + + M G P + ++ G+ G+
Sbjct: 228 FTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGK 277
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Query: 48 QQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP--KIAYDYL 105
+ ELL + PN ++ S ++ + E ++ F + R P + Y+ L
Sbjct: 104 DEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVL 163
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
+ + A + + L GC+P V LLS R+ + V + +M
Sbjct: 164 ID-GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSG--FSRKGEFGRVQSLFKDMLR 220
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G P+ T N L+ C + +VEA ++ M S C PD+ SY+ +I M + K ++
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLIRGMCSKGKPHE 280
Query: 225 AVEMMKEMV 233
A +++EM+
Sbjct: 281 AQRLLREMI 289
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYL 177
++ + LR GCVP + + L+ C+ + + + LEM+S+G PD + N L
Sbjct: 213 SLFKDMLRQGCVP----NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTL 268
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM--------- 228
+ +C+ + EA ++L+ M + PD+ SY+I+I S + + A+++
Sbjct: 269 IRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328
Query: 229 --------------------------MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
K+M+ N G P +VI + L + ++
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCRGERLTESC 387
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E+ + + + C Y +++ + + + +TERGF P +++ + ++E L
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447
>gi|302772597|ref|XP_002969716.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
gi|300162227|gb|EFJ28840.1| hypothetical protein SELMODRAFT_92207 [Selaginella moellendorffii]
Length = 457
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 49/171 (28%), Positives = 85/171 (49%), Gaps = 7/171 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G P+ T YL+ SLC + EA V +GM++ C P++ SYSI+I + +
Sbjct: 42 DMLGAGCVPNTYTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSPNVFSYSILIAGLCRGQ 101
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGF 277
K ++A E++ EM+ + G P V+ + L +M K E ++ R +GCP
Sbjct: 102 KVDEAAELLNEMI-DGGHQPN---VVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDG 157
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
Y V+++G + + A + M E+G IP + ++ G + GE+
Sbjct: 158 VVYNVLIDGFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSGFSRKGEF 208
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/230 (22%), Positives = 94/230 (40%), Gaps = 11/230 (4%)
Query: 104 YLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---AD 157
Y Y L+SL A ++ + GC P + S + C+ Q V A+
Sbjct: 53 YTYGYLLRSLCQAQRFEEARSVFRGMAAQGCSP----NVFSYSILIAGLCRGQKVDEAAE 108
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P+ T L+S LC + +L EA + M C PD Y+++I S
Sbjct: 109 LLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVLIDGFS 168
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A + +EM L G +P + + E + + + + R+GC
Sbjct: 169 KKGDMGEAYRLFEEM-LEKGCIPTVFTYNSLLSGFSRKGEFGRVQSLFKDMLRQGCVPNI 227
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +++G + + + A + + M G P + ++ G+ G+
Sbjct: 228 FTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGK 277
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 83/189 (43%), Gaps = 6/189 (3%)
Query: 48 QQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP--KIAYDYL 105
+ ELL + PN ++ S ++ + E ++ F + R P + Y+ L
Sbjct: 104 DEAAELLNEMIDGGHQPNVVTYGSLLSGLCKMGKLKEAVDLFSRMVYRGCPPDGVVYNVL 163
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
+ + A + + L GC+P V LLS R+ + V + +M
Sbjct: 164 ID-GFSKKGDMGEAYRLFEEMLEKGCIPTVFTYNSLLSG--FSRKGEFGRVQSLFKDMLR 220
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G P+ T N L+ C + +VEA ++ M S C PD+ SY+ ++ M + K ++
Sbjct: 221 QGCVPNIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTLMRGMCSKGKPHE 280
Query: 225 AVEMMKEMV 233
A +++EM+
Sbjct: 281 AQRLLREMI 289
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/240 (20%), Positives = 102/240 (42%), Gaps = 43/240 (17%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYL 177
++ + LR GCVP + + L+ C+ + + + LEM+S+G PD + N L
Sbjct: 213 SLFKDMLRQGCVP----NIFTFNNLLDGFCKMGDMVEAHRLFLEMRSLGCPPDVVSYNTL 268
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM--------- 228
+ +C+ + EA ++L+ M + PD+ SY+I+I S + + A+++
Sbjct: 269 MRGMCSKGKPHEAQRLLREMIRSGVGPDIVSYNILIDGYSKSGALDHAIKLFYEIPKSGL 328
Query: 229 --------------------------MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
K+M+ N G P +VI + L + ++
Sbjct: 329 EPDAFSYSTIIDCLCRAGKVGAAFVVFKDMIAN-GSAPDAAVVIPLVIGLCRGERLTESC 387
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E+ + + + C Y +++ + + + +TERGF P +++ + ++E L
Sbjct: 388 ELFQAMVKFECVPLIPEYNLLMYKLCKAKRSDDVCEIFHELTERGFSPDVEISKVILETL 447
>gi|302762244|ref|XP_002964544.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
gi|300168273|gb|EFJ34877.1| hypothetical protein SELMODRAFT_82221 [Selaginella moellendorffii]
Length = 528
Score = 73.2 bits (178), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 91/213 (42%), Gaps = 5/213 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
L +L R G P ++ S ++ C++ + D + + + P T N L+
Sbjct: 198 GLELLGEVTRRGFTP----DIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLI 253
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C + EA ++L M +C PD+ +Y+ ++ A + +DA E+ ++MV N L
Sbjct: 254 GGYCRAGDMDEAIRLLGKMVDDKCAPDVVTYTTLMSAFCKMGRLDDAYELFQQMVANK-L 312
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L M A+E++E + R+GCP Y VV+G + + A +
Sbjct: 313 SPDVVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKANQVRKAEE 372
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
V RGF+P +V G G A
Sbjct: 373 LVADFRSRGFVPNTVTYNILVAGCCRAGRTDQA 405
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 74/156 (47%), Gaps = 4/156 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L+ R GC P + + + Q + +++ + +S G+ P+ T N LV
Sbjct: 335 ALELLEEITRRGCPPTIYTYNCVVDGYCKAN-QVRKAEELVADFRSRGFVPNTVTYNILV 393
Query: 179 SSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+ C + +A + L ++S C + Y+I++ A+ +T+DAV+ +EM+
Sbjct: 394 AGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMI-QR 452
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
G +P V AL + +A E++E + + G
Sbjct: 453 GYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 488
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 86/198 (43%), Gaps = 36/198 (18%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T LV L +L +A +VL+ M SA VPD + ++V+ ++ + +DA E+
Sbjct: 37 PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAREL 96
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP----------IGF- 277
++EM L+ G+ + L + +AV ++E + +GC GF
Sbjct: 97 VEEM-LHRGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFC 155
Query: 278 --------QGY--EVVVEGCLE------------CREYILA-GKTVMG-MTERGFIPYIK 313
G+ ++V EGC C+ + G ++G +T RGF P I
Sbjct: 156 RARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIV 215
Query: 314 VRQKVVEGLAGVGEWKLA 331
V++GL G + A
Sbjct: 216 TYSTVIDGLCKAGRLRDA 233
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 83/182 (45%), Gaps = 4/182 (2%)
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
L + L L A+ +LQ + + VP + +++ S L R +++ EM
Sbjct: 45 LVHGLSKARRLRDAVQVLQEMVSARHVPDNTTLTVVVQSLCLGDRVDDAR--ELVEEMLH 102
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G + T + LV LC ++L EA +++ M+ C P + +Y+ +I AR+ ++
Sbjct: 103 RGMAANAITYSALVDGLCKCERLDEAVALVETMAERGCAPTVVTYNSIITGFCRARRVDE 162
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A M++MV G P + +R++ + +E++ + R+G Y V+
Sbjct: 163 AHGFMEQMVAE-GCHPDIITYTALIGGFCKSRDVGRGLELLGEVTRRGFTPDIVTYSTVI 221
Query: 285 EG 286
+G
Sbjct: 222 DG 223
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 46/220 (20%), Positives = 92/220 (41%), Gaps = 20/220 (9%)
Query: 17 PCLLQFSSL-RSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQ 75
P L ++ L +S R L + V+ + + +P+ N + +
Sbjct: 37 PDFLTYTKLVHGLSKARRLRDAVQVLQEMVSARHVPD----------NTTLTVVVQSLCL 86
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ E++E + R + I Y L+ L L A+A+++ GC P
Sbjct: 87 GDRVDDARELVEEMLH-RGMAANAITYSALVD-GLCKCERLDEAVALVETMAERGCAPT- 143
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
++ ++ + C+++ V + + +M + G HPD T L+ C + +
Sbjct: 144 ---VVTYNSIITGFCRARRVDEAHGFMEQMVAEGCHPDIITYTALIGGFCKSRDVGRGLE 200
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+L ++ PD+ +YS VI + A + DAV++ +EM
Sbjct: 201 LLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDAVDIFEEM 240
>gi|359479250|ref|XP_002275790.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Vitis vinifera]
Length = 746
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM IG PD T N L+ C D +++A ++ M S VPDL S+S +IG +S
Sbjct: 346 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 405
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A++ ++M N GL P + + N M +A+++ + + +GC +
Sbjct: 406 KNGCLDQALKYFRDMK-NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 464
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++ G C+E +L A + MTERG P ++ G + G A +
Sbjct: 465 VTYNTILNGL--CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 521
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G+ TCN +V C V+A + L M VPD +Y+ +I
Sbjct: 594 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 653
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANREMWKAVEMIEFLERKGCPIG 276
+ A ++ +M N GL+P VI L R R + M++ +ER G
Sbjct: 654 NMDRAFALVNKME-NSGLLPD---VITYNVILNGFSRQGRMQEAELIMLKMIER-GVNPD 708
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ G + A + M +RGF+P
Sbjct: 709 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 742
>gi|413937324|gb|AFW71875.1| hypothetical protein ZEAMMB73_225396 [Zea mays]
Length = 818
Score = 72.4 bits (176), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P ALA+ L GC P +L A + Q++A +L EM++ G PD T N
Sbjct: 267 IPDALAVFDDMLHRGCSPSVVTYSILLDATCKESGYRQAMA-LLDEMRAKGCEPDIVTYN 325
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++++C + EA +L + S C PD +Y+ V+ ++ + + + E++ EM N
Sbjct: 326 VLINAMCNEGDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSN 385
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P + + +L + +A+E+++ + GC Y +++G +
Sbjct: 386 -NCAPDEVTFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDD 444
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + + G P V++GL +W+ A
Sbjct: 445 AVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWERA 480
Score = 61.2 bits (147), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 90/210 (42%), Gaps = 14/210 (6%)
Query: 119 ALAILQRTLRSGCVP-----VPQIRLLLSSA-WLERRCQSQSVADILLEMKSIGYHPDCG 172
AL IL GC P P ++ L S W E V ++L EM S PD
Sbjct: 340 ALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKE-------VEELLAEMTSNNCAPDEV 392
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N +V+SLC + A +V+ MS CV D+ +YS ++ + + +DAVE++ +
Sbjct: 393 TFNTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G P V L + + +A E++ + CP + VV +
Sbjct: 453 K-SYGCKPDTIAYTTVLKGLCSTEQWERAEELMAEMLCSDCPPDEVTFNTVVASLCQKGL 511
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + V M+E G P I +++GL
Sbjct: 512 VDRAIRVVEQMSENGCSPDIVTYNCIIDGL 541
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 89/207 (42%), Gaps = 10/207 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ ++++ +GC P ++ + ++ C + D +L +++S G PD T N
Sbjct: 515 AIRVVEQMSENGCSP----DIVTYNCIIDGLCNESCIDDAMELLSDLQSCGCKPDIVTFN 570
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC +D+ +A +++ M + C PD +++ VI ++ A+E +K M N
Sbjct: 571 TLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQKGLLTQAIETLKIMAEN 630
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G +P V AL + A+E++ + G P Y V+ + +
Sbjct: 631 -GCVPNSSTYSIVVDALLKAGKAQAALELLSGMT-NGTP-DLITYNTVISNLTKAGKMEE 687
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M G P + + G+
Sbjct: 688 ALDLLRVMVSNGLCPDTTTYRSLAYGV 714
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/221 (23%), Positives = 95/221 (42%), Gaps = 18/221 (8%)
Query: 119 ALAILQRTLRSGCVP-----VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A+ +L R GC P ++ L S+ ER +++ EM PD T
Sbjct: 445 AVELLSRLKSYGCKPDTIAYTTVLKGLCSTEQWER------AEELMAEMLCSDCPPDEVT 498
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N +V+SLC + A +V++ MS C PD+ +Y+ +I + +DA+E++ ++
Sbjct: 499 FNTVVASLCQKGLVDRAIRVVEQMSENGCSPDIVTYNCIIDGLCNESCIDDAMELLSDL- 557
Query: 234 LNMGLMPRQGMVIKVAAALRA--NREMWKAVE-MIEFLERKGCPIGFQGYEVVVEGCLEC 290
+ G P ++ L+ + W+ E ++ + R CP + V+ +
Sbjct: 558 QSCGCKPD---IVTFNTLLKGLCGVDRWEDAEQLMANMMRSNCPPDELTFNTVITSLCQK 614
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A +T+ M E G +P VV+ L G+ + A
Sbjct: 615 GLLTQAIETLKIMAENGCVPNSSTYSIVVDALLKAGKAQAA 655
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 46/196 (23%), Positives = 86/196 (43%), Gaps = 9/196 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ L+ +GCVP ++ A L + ++Q+ ++L M + PD T N ++
Sbjct: 620 AIETLKIMAENGCVPNSSTYSIVVDALL-KAGKAQAALELLSGMTN--GTPDLITYNTVI 676
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S+L ++ EA +L+ M S PD +Y + + T+ AV M++ V + GL
Sbjct: 677 SNLTKAGKMEEALDLLRVMVSNGLCPDTTTYRSLAYGVCREDGTDRAVRMLRR-VQDTGL 735
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE-----GCLECREY 293
P V +R A++ + GC Y +++E G L+ +
Sbjct: 736 SPDTTFYNDVLLGFCRDRRTDLAIDCFAHMVSSGCMPDESTYVILLEALAYGGLLDEAKR 795
Query: 294 ILAGKTVMGMTERGFI 309
+LA +G+ ++ I
Sbjct: 796 LLASLCSLGVLDKKLI 811
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 12/214 (5%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
C PV +L+ +R C V+D ++G T N +V+ C ++ +
Sbjct: 183 NCPPVVPCNILI-----KRLCSDGRVSDAERVFAALGPSATVVTYNTMVNGYCRAGRIED 237
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A +++ GM PD +++ +I A+ + DA+ + +M L+ G P +
Sbjct: 238 ARRLINGMPFP---PDTFTFNPLIRALCVRGRIPDALAVFDDM-LHRGCSPSVVTYSILL 293
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
A +A+ +++ + KGC Y V++ + A + + G
Sbjct: 294 DATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNEGDVDEALNILSNLPSHGCK 353
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
P V++ L G WK V + AE+ S
Sbjct: 354 PDAVTYTPVLKSLCGSERWK---EVEELLAEMTS 384
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 86/238 (36%), Gaps = 34/238 (14%)
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
P ++ + + C++ + D + + + PD T N L+ +LC ++ +A V
Sbjct: 215 PSATVVTYNTMVNGYCRAGRIEDARRLINGMPFPPDTFTFNPLIRALCVRGRIPDALAVF 274
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM---------------------- 232
M C P + +YSI++ A A+ ++ EM
Sbjct: 275 DDMLHRGCSPSVVTYSILLDATCKESGYRQAMALLDEMRAKGCEPDIVTYNVLINAMCNE 334
Query: 233 -----VLN-MGLMPRQGM---VIKVAAALRA--NREMWKAV-EMIEFLERKGCPIGFQGY 280
LN + +P G + L++ E WK V E++ + C +
Sbjct: 335 GDVDEALNILSNLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELLAEMTSNNCAPDEVTF 394
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+V + A + V M+E G + I +++GL VG A + R
Sbjct: 395 NTIVTSLCQQGLVDRAIEVVDHMSEHGCVADIVTYSSILDGLCDVGRVDDAVELLSRL 452
>gi|302785473|ref|XP_002974508.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
gi|300158106|gb|EFJ24730.1| hypothetical protein SELMODRAFT_101075 [Selaginella moellendorffii]
Length = 567
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/177 (29%), Positives = 77/177 (43%), Gaps = 1/177 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + + + EM PD T L+ LC +QL +A K+L M CVPD
Sbjct: 17 LTREHRHDKASAVFQEMIDKSCQPDAFTFAILLRGLCRSNQLEKARKLLGRMKEMGCVPD 76
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y+ +I S A+ A + + EMV N L P + L AV+++
Sbjct: 77 DAIYNALISGYSKAKDFGQAFKFLAEMVKNHCL-PTVVTYTNIVDGLCKAERTRDAVKLL 135
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ + KGC Y V+VEG E R+ A K + M RG+ P + ++GL
Sbjct: 136 DEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 192
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 104/260 (40%), Gaps = 46/260 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A L +++ C+P ++ + ++ C+++ D +L EM+ G P+ T N
Sbjct: 96 AFKFLAEMVKNHCLPT----VVTYTNIVDGLCKAERTRDAVKLLDEMRDKGCSPNIYTYN 151
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V LC +L EA K+L+ M+ PD+ +Y+ I + + ++A ++ +
Sbjct: 152 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA----RKFLAR 207
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-C------- 287
M + P V L + ++ A M++ + +GC Y +++G C
Sbjct: 208 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDVVTYSSLIDGFCKGGEVER 267
Query: 288 ----------LECREYILAGKTVMG-----------------MTERGFIPYIKVRQKVVE 320
L CR ++A +++G M RGF P + ++
Sbjct: 268 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 327
Query: 321 GLAGVGEWKLATVVRQRFAE 340
GL K A V R E
Sbjct: 328 GLCKAERVKKAKAVFDRMVE 347
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 80/224 (35%), Gaps = 34/224 (15%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L GC P ++ E R + +L EM GY PD T N +
Sbjct: 131 AVKLLDEMRDKGCSPNIYTYNVIVEGLCEER-KLDEAKKMLEEMAVRGYFPDVVTYNSFI 189
Query: 179 SSLCAIDQLVEAAK--------------------------------VLKGMSSAECVPDL 206
LC D++ EA K +L MS+ C PD+
Sbjct: 190 KGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDHMSNRGCTPDV 249
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +I + A+ ++ M L +G P + AL + KA +M+
Sbjct: 250 VTYSSLIDGFCKGGEVERAMGLLDSM-LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLV 308
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ER+G Y ++G + A M ERG P
Sbjct: 309 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTP 352
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 50/223 (22%), Positives = 96/223 (43%), Gaps = 20/223 (8%)
Query: 119 ALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
A+ +L L+ GC P V LL L R D+L+EM+ G+ PD + N
Sbjct: 268 AMGLLDSMLKLGCRPNMVAYNSLL---GALHRLGHIGKAEDMLVEMERRGFTPDVVSYNA 324
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI----------GAMSTARKTNDAV 226
+ LC +++ +A V M C P+ SYS++I + + ++A
Sbjct: 325 CIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLIVDILLYTVLLDGLCKGGRFDEAC 384
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVE 285
+ +++ P + + R++ KA+++ + LE+ C + + ++V
Sbjct: 385 ALFSKVLDEKICEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLEKNCCNV--VTWNILVH 442
Query: 286 G-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G C++ R A ++ M + GFIP +V+ + G+
Sbjct: 443 GLCVDDR-LSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGK 484
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 2/115 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I ++ L C V +L+ ++ R +LL M G+ PD T LV
Sbjct: 419 ALQIHKQMLEKNCCNVVTWNILVHGLCVDDRLSDAET--MLLTMVDEGFIPDFVTYGTLV 476
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++C + A ++ + CVPD+ +YS +I + +A + ++V
Sbjct: 477 DAMCKCGKSAAALELFEEAVKGGCVPDVVTYSALITGLVHENMAEEAYLLFTKLV 531
>gi|302822936|ref|XP_002993123.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
gi|300139014|gb|EFJ05763.1| hypothetical protein SELMODRAFT_136561 [Selaginella moellendorffii]
Length = 569
Score = 72.0 bits (175), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/210 (24%), Positives = 89/210 (42%), Gaps = 5/210 (2%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L R G P ++ S ++ C++ + D + + + P T N L+
Sbjct: 242 LLGEVTRRGFTP----DIVTYSTVIDGLCKAGRLRDAVDIFEEMSCAPTAITYNSLIGGY 297
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C + EA ++L M C PD+ +Y+ ++ A + +DA E+ ++MV N L P
Sbjct: 298 CRAGDMDEAIRLLGKMVDDNCAPDVITYTTLMSAFCKMGRLDDAYELFQQMVANK-LSPD 356
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ L M A+E++E + R+GCP Y VV+G + + A + V
Sbjct: 357 VVTFTSLVDGLCGEGRMEDALELLEEITRRGCPPTIYTYNCVVDGYCKSNQVRKAEELVA 416
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
RGF+P +V G G A
Sbjct: 417 DFRSRGFVPNTVTYNILVAGCCRAGRTDQA 446
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 86/175 (49%), Gaps = 3/175 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+LL+MKS G +P N ++ LC +L A V + M+ A PD +Y+ ++ +S
Sbjct: 102 LLLDMKSRGMNPGTLLHNVVIGGLCRAGRLRHALGVYRQMNDAH-PPDFLTYTKLVHGLS 160
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + DAV++++EMV + +P + V +L + A E++E + +G
Sbjct: 161 KAGRLRDAVQVLQEMV-SARHVPDNTTLTVVVQSLCLGDRVDDARELVEEMLHRGMAANA 219
Query: 278 QGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +V+G +C A ++G +T RGF P I V++GL G + A
Sbjct: 220 ITYSALVDGLCKCERLDEAVALLLGEVTRRGFTPDIVTYSTVIDGLCKAGRLRDA 274
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 77/159 (48%), Gaps = 10/159 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
AL +L+ R GC P + + ++ C+S V +++ + +S G+ P+ T N
Sbjct: 376 ALELLEEITRRGCPPT----IYTYNCVVDGYCKSNQVRKAEELVADFRSRGFVPNTVTYN 431
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
LV+ C + +A + L ++S C + Y+I++ A+ +T+DAV+ +EM+
Sbjct: 432 ILVAGCCRAGRTDQALQYLDQLNSEGGPCPTSVAMYAIILDALCRDGRTDDAVQFYEEMI 491
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
G +P V AL + +A E++E + + G
Sbjct: 492 -QRGYVPAAATFATVVFALCKAHQPQQAHELLEEMIKYG 529
>gi|147840312|emb|CAN63985.1| hypothetical protein VITISV_001389 [Vitis vinifera]
Length = 850
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM IG PD T N L+ C D +++A ++ M S VPDL S+S +IG +S
Sbjct: 450 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 509
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A++ ++M N GL P + + N M +A+++ + + +GC +
Sbjct: 510 KNGCLDQALKYFRDMK-NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCXLDV 568
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++ G C+E +L A + MTERG P ++ G G A +
Sbjct: 569 VTYNTILNGL--CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYXKDGNMNKAVTL 625
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G+ TCN +V C V+A + L M VPD +Y+ +I
Sbjct: 698 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 757
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANREMWKAVEMIEFLERKGCPIG 276
+ A ++ +M N GL+P VI L R R + M++ +ER G
Sbjct: 758 NMDRAFALVNKME-NSGLLPD---VITYNVILNGFSRQGRMQEAELIMLKMIER-GVNPD 812
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ G + A + M +RGF+P
Sbjct: 813 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 846
>gi|125582553|gb|EAZ23484.1| hypothetical protein OsJ_07180 [Oryza sativa Japonica Group]
Length = 457
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L LR CVP +L A +R Q++ +L EM+ G PD T N +V
Sbjct: 51 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK-LLDEMRDKGCTPDIVTYNVVV 109
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA E+M EM
Sbjct: 110 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 169
Query: 233 ----VLNM--GLMPRQGMVIKVAAALR----------------------ANREMWKAVEM 264
NM + R+G+V L ++M KA+
Sbjct: 170 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 229
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ + +GC Y ++ E +A + + + ++G P + V++GL
Sbjct: 230 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 289
Query: 325 VGEWKLA 331
G+ K A
Sbjct: 290 AGKTKEA 296
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/213 (27%), Positives = 100/213 (46%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L++ + GC P L A+ +++ +++A + L M S G +PD + N L+
Sbjct: 191 ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDL-MVSRGCYPDIVSYNTLL 249
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A ++L + C P L SY+ VI ++ A KT +A+E++ EMV + GL
Sbjct: 250 TALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEALELLNEMV-SKGL 308
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P +AA L + A+ ++ G Y ++ G + RE A
Sbjct: 309 QPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVLYNAIILGLCKRRETHSAID 368
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G +P ++EGLA G K A
Sbjct: 369 LFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 401
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N L+ LC + A VL M CVPD+ +Y+I++ A A++
Sbjct: 29 EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 88
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++ EM + G P V + + A+E ++ L GC Y +V++G
Sbjct: 89 LLDEM-RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 147
Query: 288 LECREYILAGKTVMGMTERGFIPYI 312
+ A + + M ++G P +
Sbjct: 148 CTAERWEDAEELMGEMGQKGCPPNV 172
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 57/127 (44%), Gaps = 4/127 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + +V D +L + + PD T L+ + C +A K+L M C PD+
Sbjct: 47 RTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 103
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y++V+ + + +DA+E +K + + G P V L A E++
Sbjct: 104 TYNVVVNGICQEGRVDDAIEFLKNLP-SYGCEPNTVSYNIVLKGLCTAERWEDAEELMGE 162
Query: 268 LERKGCP 274
+ +KGCP
Sbjct: 163 MGQKGCP 169
>gi|302760809|ref|XP_002963827.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
gi|300169095|gb|EFJ35698.1| hypothetical protein SELMODRAFT_79421 [Selaginella moellendorffii]
Length = 616
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 75/309 (24%), Positives = 141/309 (45%), Gaps = 24/309 (7%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF-------LSNFPQNHRIKVI 82
+L T + +R A + E L + +E P+ + F + + +K+
Sbjct: 61 NLVTFKILIRGNCKAGQAMRALEFLRALDEFSVAPDVYIFNVLIHGLFKDGNPDQAVKLF 120
Query: 83 DEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI---R 138
+ M S R +P+I Y+ ++S +S + L A +L+ +R G P I
Sbjct: 121 ENMESS------RVKPEIVTYNTVISGLCKSGN-LEKARELLEEMIRKGGKSAPDIVTYN 173
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L+++ + R + + +MK+ G +PD TCN LVS +C + EA ++L GM
Sbjct: 174 TLINAFY--RASRIREACAFREKMKAAGINPDVLTCNILVSGICKDGDVEEALEILDGMK 231
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
A VPD+ +Y+ +I A+ A K +A E++K M + L+ ++ A +
Sbjct: 232 LAGPVPDVITYNSIIHALCVAGKVVEAAEILKTMSCSPDLVTFNTLLDGFCKA----GML 287
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A+E++E + R+ Y ++V G + +A + + +G+IP + +
Sbjct: 288 PRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQVAFYLLEEIVRQGYIPDVIAYTSL 347
Query: 319 VEGLAGVGE 327
V+GL GE
Sbjct: 348 VDGLCKSGE 356
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 64/229 (27%), Positives = 95/229 (41%), Gaps = 7/229 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
LP AL +L+ R +P +L + L R Q Q +L E+ GY PD
Sbjct: 287 LPRALEVLEEMCRENILPDVITYTILVNG-LCRVGQVQVAFYLLEEIVRQGYIPDVIAYT 345
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV LC ++ EA K++K MS C + YS ++ A + A E++ EMV +
Sbjct: 346 SLVDGLCKSGEIEEAHKLVKEMSVRGCRTGVVMYSSLVSGYCRAGNVHKAREILAEMV-S 404
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ ++P V L + + KAV +I L +G Y +++G +
Sbjct: 405 INMVPPLFTYNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGLCKANRVRE 464
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKLAT-VVRQRFA 339
A M RG P VV GL VG W L + R+R A
Sbjct: 465 ACDLADEMASRGCFPNDVTLGSVVFGLCRVGRVDDAWSLVVEMSRKRHA 513
>gi|357149641|ref|XP_003575182.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 557
Score = 71.6 bits (174), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 107/247 (43%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L LR GCVP +L A +R Q++ +L EM++ G PD T N +V
Sbjct: 175 ALVVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAM-KLLDEMRAKGCAPDIITYNVVV 233
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA ++M EM
Sbjct: 234 NGICQEGRVDDAIEFLKSLPSHGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYP 293
Query: 233 ----VLNM--GLMPRQGMV----------------------IKVAAALRANREMWKAVEM 264
NM + R+G+V + A ++M +A+
Sbjct: 294 PNVVTFNMLISFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 353
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E + +GC Y ++ E A + + + ++G P + V++GL
Sbjct: 354 VELMVSRGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 413
Query: 325 VGEWKLA 331
G+ K A
Sbjct: 414 AGKTKEA 420
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 104/225 (46%), Gaps = 5/225 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L + + GC P + A+ +++ +++A + L M S G +PD + N L+
Sbjct: 315 AMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVEL-MVSRGCYPDIVSYNTLL 373
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A ++L + C P L SY+ VI ++ A KT +A+E++ EMV GL
Sbjct: 374 TALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTKAGKTKEALELLNEMVTK-GL 432
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P +++ L + +A+ ++ G Y ++ G + RE A
Sbjct: 433 QPDIITYSTISSGLCREDRIEEAIRAFCKVQDMGIRPNTVLYNAILLGLCKRRETHNAID 492
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ M G +P ++EGL G K A R+ EL S
Sbjct: 493 LFIYMISNGCMPNESTYTILIEGLTYEGLVKEA---RELLGELCS 534
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
VAD+ +E PD T N L+ LC + A VL M CVPD+ +Y+I++
Sbjct: 147 VADMPME-------PDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLE 199
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
A A++++ EM G P V + + A+E ++ L GC
Sbjct: 200 ATCKRSGYKQAMKLLDEMRAK-GCAPDIITYNVVVNGICQEGRVDDAIEFLKSLPSHGCE 258
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
Y +V++G + A K + M+++G+ P +
Sbjct: 259 PNTVSYNIVLKGLCTAERWEDAEKLMAEMSQKGYPPNV 296
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
G C L+ LCA + EA +VL A C PD+ +Y+ ++ + + A +
Sbjct: 95 GPCAALIKKLCASGRTAEARRVL-----AACEPDVMAYNAMVAGYCVTGQLDAA----RR 145
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+V +M + P + L A+ +++ + R+GC Y +++E +
Sbjct: 146 LVADMPMEPDSYTYNTLIRGLCGRGRTGNALVVLDDMLRRGCVPDVVTYTILLEATCKRS 205
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y A K + M +G P I VV G+ G
Sbjct: 206 GYKQAMKLLDEMRAKGCAPDIITYNVVVNGICQEG 240
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 3/149 (2%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
++L RR + ++L ++ G P+ + N ++ + C ++ A ++ M S C
Sbjct: 304 SFLCRRGLVEPAMEVLDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAFVELMVSRGCY 363
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ SY+ ++ A+ + + AVE++ ++ + G P V L + +A+E
Sbjct: 364 PDIVSYNTLLTALCRGGEVDAAVELLHQLK-DKGCTPVLISYNTVIDGLTKAGKTKEALE 422
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECRE 292
++ + KG Y + G CRE
Sbjct: 423 LLNEMVTKGLQPDIITYSTISSGL--CRE 449
>gi|226509112|ref|NP_001141010.1| uncharacterized protein LOC100273089 [Zea mays]
gi|194702156|gb|ACF85162.1| unknown [Zea mays]
gi|413937351|gb|AFW71902.1| hypothetical protein ZEAMMB73_497690 [Zea mays]
Length = 567
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 108/247 (43%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GC+P +L A +R Q++ +L EM G PD T N ++
Sbjct: 185 ALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAM-KLLDEMHDKGCAPDIVTYNVVL 243
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA ++M+EM
Sbjct: 244 NGICQEGRVEDAMEFLKNLPSYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCP 303
Query: 233 ----VLNM--GLMPRQGMVIKVAAALR----------------------ANREMWKAVEM 264
NM + R+G+V L +++ KA+E
Sbjct: 304 PNVVTFNMLISFLCRRGLVEPAMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEF 363
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E + +GC Y ++ E +A + + + ++G P + V++GL
Sbjct: 364 VELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTK 423
Query: 325 VGEWKLA 331
G+ K A
Sbjct: 424 AGKTKEA 430
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/225 (27%), Positives = 106/225 (47%), Gaps = 5/225 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L++ + GC P L A+ +++ +++ + L M S G +PD + N L+
Sbjct: 325 AMEVLEQMPQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVEL-MVSRGCYPDIVSYNTLL 383
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A ++L + C P L SY+ VI ++ A KT +A+E++ EM + GL
Sbjct: 384 TALCRNGEVDVAIELLHQLKDKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMT-SKGL 442
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P +A+ L + +AV ++ G Y ++ G + RE A
Sbjct: 443 QPDIITYSTIASGLCREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGLCKRRETHNAID 502
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
M G +P +VEGLA G K A R+ FA+L S
Sbjct: 503 LFAYMISSGCMPNESTYTILVEGLAYEGLVKEA---RELFAQLCS 544
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
VAD+ +E PD T N L+ LC + A VL+ M C+PD+ +Y+I++
Sbjct: 157 VADMPVE-------PDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLE 209
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
A A++++ EM + G P V + + A+E ++ L GC
Sbjct: 210 ATCKRSGYKQAMKLLDEM-HDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKNLPSYGCE 268
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
Y +V++G + A K + M +G P +
Sbjct: 269 PNTVSYNIVLKGLFTAERWEDAEKLMEEMAHKGCPPNV 306
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 126/282 (44%), Gaps = 13/282 (4%)
Query: 47 YQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD 103
Y+Q +LL + P+ ++ L+ Q R++ E L++ +P ++Y+
Sbjct: 217 YKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEGRVEDAMEFLKN-LPSYGCEPNTVSYN 275
Query: 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEM 162
+L L + A +++ GC P V +L+S +L RR + ++L +M
Sbjct: 276 IVLK-GLFTAERWEDAEKLMEEMAHKGCPPNVVTFNMLIS--FLCRRGLVEPAMEVLEQM 332
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
G P+ + N L+ + C ++ +A + ++ M S C PD+ SY+ ++ A+ +
Sbjct: 333 PQYGCTPNSLSYNPLLHAFCKQKKIHKAMEFVELMVSRGCYPDIVSYNTLLTALCRNGEV 392
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
+ A+E++ ++ + G P V L + +A+E+++ + KG Y
Sbjct: 393 DVAIELLHQLK-DKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMTSKGLQPDIITYST 451
Query: 283 VVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ G CRE + A +T + + G P + ++ GL
Sbjct: 452 IASGL--CREDRIEEAVRTFCKVQDMGIRPTAALYNAILLGL 491
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 60/136 (44%), Gaps = 1/136 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R ++ + +L +M G PD T L+ + C +A K+L M C PD+ +
Sbjct: 179 RGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRSGYKQAMKLLDEMHDKGCAPDIVT 238
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y++V+ + + DA+E +K + + G P V L A +++E +
Sbjct: 239 YNVVLNGICQEGRVEDAMEFLKNLP-SYGCEPNTVSYNIVLKGLFTAERWEDAEKLMEEM 297
Query: 269 ERKGCPIGFQGYEVVV 284
KGCP + +++
Sbjct: 298 AHKGCPPNVVTFNMLI 313
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 65/155 (41%), Gaps = 9/155 (5%)
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
G C L+ LCA + +A +VL A PD+ Y+ ++ A + + A +
Sbjct: 105 GPCAALIKKLCASGRTADARRVL-----AASGPDVMVYNAMVAGYCGAGQLDAA----RR 155
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+V +M + P + L A+ ++E + R+GC Y +++E +
Sbjct: 156 LVADMPVEPDAYTYNTLIRGLCGRGRTSNALAVLEDMFRRGCLPDVVTYTILLEATCKRS 215
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y A K + M ++G P I V+ G+ G
Sbjct: 216 GYKQAMKLLDEMHDKGCAPDIVTYNVVLNGICQEG 250
>gi|326505340|dbj|BAK03057.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511084|dbj|BAJ91889.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518326|dbj|BAJ88192.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326518558|dbj|BAJ88308.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 556
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L LR GCVP +L A +R Q+V +L EM+ G PD T N +V
Sbjct: 171 ALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAV-KLLDEMRDKGCAPDIVTYNVVV 229
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA ++M EM
Sbjct: 230 NGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGLCTAERWEDAEKLMAEMSRKGRP 289
Query: 233 ----VLNM--GLMPRQGMV----------------------IKVAAALRANREMWKAVEM 264
NM + R+G+V + A ++M +A+
Sbjct: 290 PNVVTFNMLISFLCRRGLVEPAMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMDRAMAF 349
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E + GC Y ++ E A + + + ++G P + V++GL
Sbjct: 350 VELMVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTVIDGLTK 409
Query: 325 VGEWKLA 331
G+ + A
Sbjct: 410 AGKTEEA 416
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 65/251 (25%), Positives = 117/251 (46%), Gaps = 8/251 (3%)
Query: 95 RSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ RP + ++ L+S+ + P A+ IL + + GC P + A+ +++
Sbjct: 286 KGRPPNVVTFNMLISFLCRRGLVEP-AMEILDQIPKYGCTPNSLSYNPILHAFCKQKKMD 344
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+++A + L M S G +PD + N L+++LC ++ A ++L + C P L SY+ V
Sbjct: 345 RAMAFVEL-MVSSGCYPDIVSYNTLLTALCRGGEVDAAVELLHQLKDKGCTPVLISYNTV 403
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I ++ A KT +A+E++ EMV GL P +++ L + +A++ ++ G
Sbjct: 404 IDGLTKAGKTEEALELLNEMVTK-GLQPDIITYSTISSGLCREGRIEEAIKAFCKVQDMG 462
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++ G + R A M G +P ++EGLA G K A
Sbjct: 463 IRPNTVLYNAILLGLCKRRATHSAIDLFTYMVSNGCMPNESTYTILIEGLAYEGLVKEA- 521
Query: 333 VVRQRFAELKS 343
R+ AEL S
Sbjct: 522 --REMMAELCS 530
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N L+ LC + A VL M CVPD+ +Y+I++ A AV+
Sbjct: 149 EPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVK 208
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++ EM + G P V + + A+E ++ L GC Y +V++G
Sbjct: 209 LLDEM-RDKGCAPDIVTYNVVVNGICQEGRVDDAMEFLKSLPSYGCEPNTVSYNIVLKGL 267
Query: 288 LECREYILAGKTVMGMTERGFIPYI 312
+ A K + M+ +G P +
Sbjct: 268 CTAERWEDAEKLMAEMSRKGRPPNV 292
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 66/155 (42%), Gaps = 9/155 (5%)
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
G C L+ LCA + EA +VL A C PD+ SY+ ++ + ++A +
Sbjct: 91 GPCAALIKKLCASGRTAEARRVL-----ASCEPDVMSYNAMVAGYCVTGQLDNA----RR 141
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+V M + P + L A+ +++ + R+GC Y +++E +
Sbjct: 142 LVAAMPMEPDTYTYNTLIRGLCGRGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRS 201
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y A K + M ++G P I VV G+ G
Sbjct: 202 GYKQAVKLLDEMRDKGCAPDIVTYNVVVNGICQEG 236
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 62/137 (45%), Gaps = 3/137 (2%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R ++ + +L +M G PD T L+ + C +A K+L M C PD+ +
Sbjct: 165 RGRTDNALAVLDDMLRRGCVPDVVTYTILLEATCKRSGYKQAVKLLDEMRDKGCAPDIVT 224
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEF 267
Y++V+ + + +DA+E +K + + G P V L E W+ E ++
Sbjct: 225 YNVVVNGICQEGRVDDAMEFLKSLP-SYGCEPNTVSYNIVLKGL-CTAERWEDAEKLMAE 282
Query: 268 LERKGCPIGFQGYEVVV 284
+ RKG P + +++
Sbjct: 283 MSRKGRPPNVVTFNMLI 299
>gi|255565812|ref|XP_002523895.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536825|gb|EEF38464.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 784
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 81/170 (47%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+LL+MK+ G P+ T N LVS C + L EAA+V+ M+ +PD+ +Y+++IG +
Sbjct: 268 DLLLDMKNNGLLPNRNTFNILVSGYCKLGWLKEAAQVIDLMAQNNVLPDVWTYNMLIGGL 327
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K ++A + EM N+ L+P + K E+I+ +E KG
Sbjct: 328 CKDGKIDEAFRLKDEME-NLKLLPDVVTYNTLINGCFDCSSSLKGFELIDKMEGKGVKPN 386
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VVV+ ++ + AG + M E GF P ++ G G
Sbjct: 387 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAG 436
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I ++ +G + T N L+ C ++L EA ++ M C PD SY+ ++ +
Sbjct: 199 IFSDVIKLGVKVNTNTFNILIYGCCIENKLSEAIGLIGKMKDFSCFPDNVSYNTILDVLC 258
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQG 243
K N+A +++ +M N GL+P +
Sbjct: 259 KKGKLNEARDLLLDMK-NNGLLPNRN 283
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 43/85 (50%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + + + + L +M+ G+ PDC T N L++ C +L EA +++ MS
Sbjct: 396 WYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLINGYCKAGRLSEAFRMMDEMSRKGLKM 455
Query: 205 DLESYSIVIGAMSTARKTNDAVEMM 229
+ + + ++ + RK +DA +++
Sbjct: 456 NSVTLNTILHTLCGERKLDDAYKLL 480
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
S G D T N ++S LC D+ EA +L M + PD +Y+ ++ A++ A +
Sbjct: 625 SKGKAIDAVTYNTIISGLCKEDRFEEAFDLLAEMEEKKLGPDCYTYNAILSALADAGRMK 684
Query: 224 DAVEMMKEMV 233
+A E M +V
Sbjct: 685 EAEEFMSRIV 694
>gi|414871539|tpg|DAA50096.1| TPA: ATP binding protein [Zea mays]
Length = 692
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
ALA+L R GC P+P + ++ LE C+ +S +L ++ + G D G CN
Sbjct: 178 ALAVLDEMPRRGCAPIPPMYHVI----LEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 233
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ + S C PD+ SY+ V+ + A++ E+M+EMV
Sbjct: 234 LVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV-R 292
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M P + + L N + E++ + GC + Y +++G + +
Sbjct: 293 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 352
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A + + M G P + +++GL W+
Sbjct: 353 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE 386
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 69/292 (23%), Positives = 126/292 (43%), Gaps = 52/292 (17%)
Query: 38 VRAAVDAKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRP 94
++ A+ +++ ELL F++ C + F+ L +F QN + + E+LE L
Sbjct: 376 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LEH 433
Query: 95 RSRPK-IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
P I Y +++ + + L + A+ +L+ GC P + + L+ C +
Sbjct: 434 GCMPDVITYTTVINGFCKEGL--IDEAVMLLKSMTACGCKP----NTISYTIVLKGLCSA 487
Query: 153 Q---SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ D++ +M G + T N L++ LC + +A ++LK M C PDL SY
Sbjct: 488 ERWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISY 547
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANR--------- 256
S VI + A KT++A+E++ MV N G+ P + +A+AL R N+
Sbjct: 548 STVIDGLGKAGKTDEALELLNVMV-NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQ 606
Query: 257 ----------------------EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E +A+E + ++ GC Y +++ G
Sbjct: 607 DTTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 658
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 3/173 (1%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M G PD T +++ C + EA +LK M++ C P+ SY+IV+
Sbjct: 423 VIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNTISYTIVLK 482
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGC 273
+ +A + DA ++M +M+ P + + + +A+E+++ + GC
Sbjct: 483 GLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGC 540
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V++G + + A + + M +G P + + L+ G
Sbjct: 541 SPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSREG 593
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L + G P I ++SA L R + V + ++ D N ++
Sbjct: 563 ALELLNVMVNKGMSPNTIIYSSIASA-LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVI 621
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM----VL 234
SSLC + A + L M S+ CVP+ +Y+I+I +++ +A EM+ E+ L
Sbjct: 622 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 681
Query: 235 NMGLMPRQGMV 245
LM G+V
Sbjct: 682 RKHLMKHFGIV 692
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+++ +R C P + L+S +L R + V ++L +M G PD ++
Sbjct: 286 LMEEMVRMACPPNIVTFNTLIS--YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDG 343
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ ++ + +A + + E++ EM P
Sbjct: 344 ICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKD--CP 401
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 402 LDDVTFNILVDFFCQNGLVDRVIELLEQMLEHGCMPDVITYTTVING--FCKEGLIDEAV 459
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ MT G P V++GL W
Sbjct: 460 MLLKSMTACGCKPNTISYTIVLKGLCSAERW 490
>gi|414883768|tpg|DAA59782.1| TPA: hypothetical protein ZEAMMB73_461975 [Zea mays]
Length = 683
Score = 71.2 bits (173), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 100/215 (46%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GCVP + + A + + +++ A +L EM +G D T N LV
Sbjct: 196 ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEA-AMLLDEMLLMGCAADVNTFNDLV 254
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ EAA+++ M + C+P + +Y ++ + R+ ++A M +G
Sbjct: 255 LGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQADEACAM-------LGR 307
Query: 239 MPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+P +V+ V ++ +A E+ E + KGCP Y +++ G + + A
Sbjct: 308 LPEVNVVMLNTVIRGCLTEGKLARATELYEMMGSKGCPPDVHTYSILMHGLCKLGRFGSA 367
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M E+G P I ++ G W A
Sbjct: 368 VRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 402
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD T + L+ LC + + A ++L M C P++ +YS ++ +
Sbjct: 339 MGSKGCPPDVHTYSILMHGLCKLGRFGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM 398
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+DA M+ +M+ M QG + AL + ++ +A +++ ++ +GC Y
Sbjct: 399 WDDARAMLDQMLAKGFSMNSQGYN-GIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYN 457
Query: 282 VVV-----EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
++ +E E+I + E G + ++ L G W+
Sbjct: 458 TMIYHLCNNDLMEEAEHIFR-----NLIEEGVVANGITYNTLIHALLRNGRWQ 505
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 75/176 (42%), Gaps = 8/176 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMKS G PD T N ++ LC D + EA + + + V + +Y+ +I A+
Sbjct: 443 EMKSQGCKPDICTYNTMIYHLCNNDLMEEAEHIFRNLIEEGVVANGITYNTLIHALLRNG 502
Query: 221 KTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + + + EM+L+ + ++ G++ + +R M EM+ KG
Sbjct: 503 RWQEGLRLASEMLLHGCQLDVISYNGLIKALCKEGNVDRSMALLEEMVT----KGIKPNN 558
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y +++ + + A + M +G P I ++ GL VG W A +
Sbjct: 559 FSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG-WTHAAL 613
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ V D L EM + G PD T N L++ LC + A +L+ + + PD+
Sbjct: 569 CKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDI 628
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIK 247
+Y+I+I R +DA M+ + ++ G++P + GM+++
Sbjct: 629 VTYNILISWHCKVRLLDDAA-MLLDKAISGGIVPNERTWGMMVQ 671
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 1/113 (0%)
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+LC + + +A +L+GM+ CVPD Y VI A+ +A ++ EM+L MG
Sbjct: 186 ALCRLGRAGDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAAMLLDEMLL-MGCA 244
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ L + +A +++ + +GC Y +++G R+
Sbjct: 245 ADVNTFNDLVLGLCGLGRVREAARLVDRMMTQGCMPSVVTYGFLLQGLCRTRQ 297
>gi|125539937|gb|EAY86332.1| hypothetical protein OsI_07707 [Oryza sativa Indica Group]
Length = 584
Score = 70.9 bits (172), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L LR CVP +L A +R Q++ +L EM+ G PD T N +V
Sbjct: 179 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK-LLDEMRDKGCTPDIVTYNVVV 237
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA E+M EM
Sbjct: 238 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 297
Query: 233 ----VLNM--GLMPRQGMVIKVAAALR----------------------ANREMWKAVEM 264
NM + R+G+V L ++M KA+
Sbjct: 298 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAF 357
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ + +GC Y ++ E +A + + + ++G P + V++GL
Sbjct: 358 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 417
Query: 325 VGEWKLA 331
G+ K A
Sbjct: 418 AGKTKEA 424
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 3/232 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ ++ L+S+ + P AL +L++ + GC P L A+ +++ +++A +
Sbjct: 301 VTFNMLISFLCRKGLVEP-ALEVLEQIPKYGCSPNSLSYNPLLHAFCKQKKMDKAMAFLD 359
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
L M S G +PD + N L+++LC ++ A ++L + C P L SY+ VI ++ A
Sbjct: 360 L-MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 418
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
KT +A+E++ EMV + GL P +AA L + A+ ++ G
Sbjct: 419 GKTKEALELLNEMV-SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 477
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + RE A M G +P ++EGLA G K A
Sbjct: 478 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 529
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 62/143 (43%), Gaps = 1/143 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D TC+ L+ LC + A VL M CVPD+ +Y+I++ A A++++
Sbjct: 159 DAYTCDTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMKLL 218
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
EM + G P V + + A+E ++ L GC Y +V++G
Sbjct: 219 DEM-RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCT 277
Query: 290 CREYILAGKTVMGMTERGFIPYI 312
+ A + + M ++G P +
Sbjct: 278 AERWEDAEELMGEMGQKGCPPNV 300
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + +V D +L + + PD T L+ + C +A K+L M C PD+
Sbjct: 175 RTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 231
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIE 266
+Y++V+ + + +DA+E +K + + G P V L E W+ A E++
Sbjct: 232 TYNVVVNGICQEGRVDDAIEFLKNLP-SYGCEPNTVSYNIVLKGL-CTAERWEDAEELMG 289
Query: 267 FLERKGCP 274
+ +KGCP
Sbjct: 290 EMGQKGCP 297
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 66/170 (38%), Gaps = 9/170 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D L + PD GTC L+ L A + EA +VL A C PD+ +Y+ ++
Sbjct: 84 DEALRLVGSARRPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMMAGY 138
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + + A E + ++ + R + EM+ R+ C
Sbjct: 139 CGAGQVDAARRWCAERAVERDAYTCDTLIRGLCGRGRTANALAVLDEML----RRRCVPD 194
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++E + Y A K + M ++G P I VV G+ G
Sbjct: 195 VVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 244
>gi|363543233|ref|NP_001241831.1| uncharacterized protein LOC100857030 [Zea mays]
gi|224033903|gb|ACN36027.1| unknown [Zea mays]
Length = 655
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/214 (24%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
ALA+L R GC P+P + ++ LE C+ +S +L ++ + G D G CN
Sbjct: 141 ALAVLDEMPRRGCAPIPPMYHVI----LEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ + S C PD+ SY+ V+ + A++ E+M+EMV
Sbjct: 197 LVLNAICDQGSVDEALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV-R 255
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M P + + L N + E++ + GC + Y +++G + +
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDGICKEGHLEV 315
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A + + M G P + +++GL W+
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE 349
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 68/291 (23%), Positives = 126/291 (43%), Gaps = 50/291 (17%)
Query: 38 VRAAVDAKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRP 94
++ A+ +++ ELL F++ C + F+ L +F QN + + E+LE + R
Sbjct: 339 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQMLE-RG 397
Query: 95 RSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
I Y +++ + + L + A+ +L+ GC P + + L+ C ++
Sbjct: 398 CMPDVITYTTVINGFCKEGL--IDEAVMLLKSMTACGCKP----NTISYTIVLKGLCSAE 451
Query: 154 ---SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
D++ +M G + T N L++ LC + +A ++LK M C PDL SYS
Sbjct: 452 RWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYS 511
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANR---------- 256
VI + A KT++A+E++ MV N G+ P + +A+AL R N+
Sbjct: 512 TVIDGLGKAGKTDEALELLNVMV-NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQD 570
Query: 257 ---------------------EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E +A+E + ++ GC Y +++ G
Sbjct: 571 TTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRG 621
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 80/181 (44%), Gaps = 6/181 (3%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ+ V ++L +M G PD T +++ C + EA +LK M++ C P+
Sbjct: 378 CQNGLVDRVIELLEQMLERGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMTACGCKPNT 437
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMI 265
SY+IV+ + +A + DA ++M +M+ P + + + +A+E++
Sbjct: 438 ISYTIVLKGLCSAERWVDAEDLMSQMIQQG--CPLNPITFNTLINFLCKKGLVEQAIELL 495
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC Y V++G + + A + + M +G P + + L+
Sbjct: 496 KQMLVNGCSPDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSRE 555
Query: 326 G 326
G
Sbjct: 556 G 556
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L + G P I ++SA L R + V + ++ D N ++
Sbjct: 526 ALELLNVMVNKGMSPNTIIYSSIASA-LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVI 584
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM----VL 234
SSLC + A + L M S+ CVP+ +Y+I+I +++ +A EM+ E+ L
Sbjct: 585 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644
Query: 235 NMGLMPRQGMV 245
LM G+V
Sbjct: 645 RKHLMKHFGIV 655
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 88/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+++ +R C P + L+S +L R + V ++L +M G PD ++
Sbjct: 249 LMEEMVRMACPPNIVTFNTLIS--YLCRNGLFERVHEVLAQMVEHGCTPDIRMYATIIDG 306
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ ++ + +A + + E++ EM P
Sbjct: 307 ICKEGHLEVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKD--CP 364
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + +GC Y V+ G C+E ++
Sbjct: 365 LDDVTFNILVDFFCQNGLVDRVIELLEQMLERGCMPDVITYTTVING--FCKEGLIDEAV 422
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ MT G P V++GL W
Sbjct: 423 MLLKSMTACGCKPNTISYTIVLKGLCSAERW 453
>gi|46390363|dbj|BAD15828.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|215697127|dbj|BAG91121.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 554
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 63/247 (25%), Positives = 106/247 (42%), Gaps = 35/247 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L LR CVP +L A +R Q++ +L EM+ G PD T N +V
Sbjct: 177 ALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK-LLDEMRDKGCTPDIVTYNVVV 235
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+ +C ++ +A + LK + S C P+ SY+IV+ + TA + DA E+M EM
Sbjct: 236 NGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGLCTAERWEDAEELMGEMGQKGCP 295
Query: 233 ----VLNM--GLMPRQGMVIKVAAALR----------------------ANREMWKAVEM 264
NM + R+G+V L ++M KA+
Sbjct: 296 PNVVTFNMLISFLCRKGLVEPALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAF 355
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ + +GC Y ++ E +A + + + ++G P + V++GL
Sbjct: 356 LDLMVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTK 415
Query: 325 VGEWKLA 331
G+ K A
Sbjct: 416 AGKTKEA 422
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 3/232 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ ++ L+S+ + P AL +L++ + GC P L A+ +++ +++A +
Sbjct: 299 VTFNMLISFLCRKGLVEP-ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 357
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
L M S G +PD + N L+++LC ++ A ++L + C P L SY+ VI ++ A
Sbjct: 358 L-MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 416
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
KT +A+E++ EMV + GL P +AA L + A+ ++ G
Sbjct: 417 GKTKEALELLNEMV-SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 475
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + RE A M G +P ++EGLA G K A
Sbjct: 476 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 527
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 62/145 (42%), Gaps = 1/145 (0%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N L+ LC + A VL M CVPD+ +Y+I++ A A++
Sbjct: 155 EPDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEATCKRSGYKQAMK 214
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++ EM + G P V + + A+E ++ L GC Y +V++G
Sbjct: 215 LLDEM-RDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTVSYNIVLKGL 273
Query: 288 LECREYILAGKTVMGMTERGFIPYI 312
+ A + + M ++G P +
Sbjct: 274 CTAERWEDAEELMGEMGQKGCPPNV 298
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 60/128 (46%), Gaps = 6/128 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + +V D +L + + PD T L+ + C +A K+L M C PD+
Sbjct: 173 RTANALAVLDEMLRRRCV---PDVVTYTILLEATCKRSGYKQAMKLLDEMRDKGCTPDIV 229
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIE 266
+Y++V+ + + +DA+E +K + + G P V L E W+ A E++
Sbjct: 230 TYNVVVNGICQEGRVDDAIEFLKNLP-SYGCEPNTVSYNIVLKGL-CTAERWEDAEELMG 287
Query: 267 FLERKGCP 274
+ +KGCP
Sbjct: 288 EMGQKGCP 295
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 67/159 (42%), Gaps = 9/159 (5%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD GTC L+ L A + EA +VL A C PD+ +Y+ ++ A + + A
Sbjct: 93 RPDAGTCAALIKKLSASGRTAEARRVL-----AACGPDVMAYNAMVAGYCGAGQLDAARR 147
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++ EM + P + L A+ +++ + R+ C Y +++E
Sbjct: 148 LVAEMPVE----PDAYTYNTLIRGLCGRGRTANALAVLDEMLRRRCVPDVVTYTILLEAT 203
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y A K + M ++G P I VV G+ G
Sbjct: 204 CKRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEG 242
>gi|226528493|ref|NP_001147073.1| ATP binding protein [Zea mays]
gi|195607078|gb|ACG25369.1| ATP binding protein [Zea mays]
Length = 655
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 99/214 (46%), Gaps = 8/214 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
ALA+L R GC P+P + ++ LE C+ +S +L ++ + G D G CN
Sbjct: 141 ALAVLDEMPRRGCAPIPPMYHVI----LEAACRGGGFRSAVRVLEDLHARGCALDVGNCN 196
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + +A +L+ + S C PD+ SY+ V+ + A++ E+M+EMV
Sbjct: 197 LVLNAICDQGSVDKALHLLRDLPSFGCEPDVVSYNAVLKGLCMAKRWGCVQELMEEMV-R 255
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M P + + L N + E++ + GC + Y +++G + +
Sbjct: 256 MACPPNIVTFNTLISYLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDGICKEGHLKV 315
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A + + M G P + +++GL W+
Sbjct: 316 AHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWE 349
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 73/301 (24%), Positives = 136/301 (45%), Gaps = 15/301 (4%)
Query: 38 VRAAVDAKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRP 94
++ A+ +++ ELL F++ C + F+ L +F QN + + E+LE + +
Sbjct: 339 LKGLCSAERWEETEELLAEMFDKDCPLDDVTFNILVDFFCQNGLVDRVIELLEQML-VHG 397
Query: 95 RSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
I Y +++ + + L + A+ +L+ GC P + + L+ C ++
Sbjct: 398 CMPDVITYTTVINGFCKEGL--IDEAVMLLKSMTACGCKP----NTISYTIVLKGLCSAE 451
Query: 154 ---SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
D++ +M G + T N L++ LC + +A ++LK M C PDL SYS
Sbjct: 452 RWVDAEDLMSQMIQQGCPLNPITFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYS 511
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
VI + A KT++A+E++ MV N G+ P + +A+AL + K ++M + ++
Sbjct: 512 TVIDGLGKAGKTDEALELLNVMV-NKGMSPNTIIYSSIASALSREGRINKVIQMFDNIQD 570
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
Y V+ + E A + + M G +P ++ GLA G K
Sbjct: 571 TTIRSDAVLYNAVISSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKE 630
Query: 331 A 331
A
Sbjct: 631 A 631
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 5/131 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L + G P I ++SA L R + V + ++ D N ++
Sbjct: 526 ALELLNVMVNKGMSPNTIIYSSIASA-LSREGRINKVIQMFDNIQDTTIRSDAVLYNAVI 584
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM----VL 234
SSLC + A + L M S+ CVP+ +Y+I+I +++ +A EM+ E+ L
Sbjct: 585 SSLCKRGETERAIEFLAYMVSSGCVPNESTYTILIRGLASEGFVKEAQEMLTELCSKGAL 644
Query: 235 NMGLMPRQGMV 245
LM G+V
Sbjct: 645 RKHLMKHFGIV 655
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+++ +R C P + L+S +L R + V ++L +M G PD ++
Sbjct: 249 LMEEMVRMACPPNIVTFNTLIS--YLCRNGLFERVHEVLAQMAEHGCTPDIRMYATIIDG 306
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ ++ + +A + + E++ EM P
Sbjct: 307 ICKEGHLKVAHEILNRMPSYGLKPNVVCYNTLLKGLCSAERWEETEELLAEMFDKD--CP 364
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 365 LDDVTFNILVDFFCQNGLVDRVIELLEQMLVHGCMPDVITYTTVING--FCKEGLIDEAV 422
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ MT G P V++GL W
Sbjct: 423 MLLKSMTACGCKPNTISYTIVLKGLCSAERW 453
>gi|296083846|emb|CBI24234.3| unnamed protein product [Vitis vinifera]
Length = 589
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/179 (27%), Positives = 84/179 (46%), Gaps = 5/179 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM IG PD T N L+ C D +++A ++ M S VPDL S+S +IG +S
Sbjct: 189 VLDEMLKIGMSPDTATYNILLVECCRNDNMMDAERIFDEMPSQGVVPDLVSFSALIGLLS 248
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A++ ++M N GL P + + N M +A+++ + + +GC +
Sbjct: 249 KNGCLDQALKYFRDMK-NAGLAPDNVIYTILIGGFCRNGVMSEALKVRDEMLEQGCVLDV 307
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++ G C+E +L A + MTERG P ++ G + G A +
Sbjct: 308 VTYNTILNGL--CKEKMLSEADELFTEMTERGVFPDFYTFTTLINGYSKDGNMNKAVTL 364
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 9/154 (5%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G+ TCN +V C V+A + L M VPD +Y+ +I
Sbjct: 437 EMVEKGFEATIITCNTIVKGYCRAGNAVKADEFLSNMLLKGIVPDGITYNTLINGFIKEE 496
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANREMWKAVEMIEFLERKGCPIG 276
+ A ++ +M N GL+P VI L R R + M++ +ER P
Sbjct: 497 NMDRAFALVNKME-NSGLLPD---VITYNVILNGFSRQGRMQEAELIMLKMIERGVNP-D 551
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ G + A + M +RGF+P
Sbjct: 552 RSTYTSLINGHVTQNNLKEAFRVHDEMLQRGFVP 585
>gi|357140400|ref|XP_003571756.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 673
Score = 70.1 bits (170), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 56/216 (25%), Positives = 94/216 (43%), Gaps = 16/216 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
AL +L+ R GCVP +L + C V A +L EM +G D T N
Sbjct: 191 ALTMLRSMARHGCVP----DTVLYQTVIHALCAQGGVNEAATLLDEMFLMGCSADVNTFN 246
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V LC + +L EAA+++ M CVP+ +Y ++ + A + +A M
Sbjct: 247 DIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLCLASQVEEARTM------- 299
Query: 236 MGLMPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
+G +P +V+ V + ++ +A E+ E + KGCP Y +++ G +
Sbjct: 300 LGRVPELNVVLFNTVIGRCLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRL 359
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A K + M ++GF P I ++ G W
Sbjct: 360 GSAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWD 395
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 82/190 (43%), Gaps = 11/190 (5%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + + D + EMKS GY PD T N ++ LC +Q+ EA + + + V +
Sbjct: 424 CKDRRMDDAMRFMQEMKSQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGVVANA 483
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVE 263
+Y+ +I A+ DA+ + +MVL+ + ++ G++ + +R + E
Sbjct: 484 ITYNTLIHALLRNGSWQDAISLANDMVLHGCSLDIVSYNGLIKALCRDGNVDRSIMLLSE 543
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
M E KG Y +++ + R A + M + P I ++ GL
Sbjct: 544 MAE----KGIKPNNVSYNLLISELCKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLC 599
Query: 324 GVGEWKLATV 333
+G W A +
Sbjct: 600 KMG-WMHAAL 608
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 8/145 (5%)
Query: 182 CAID-QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C +D +L EAA++ + M S C PD +YSI+I + + A+++++EM + G P
Sbjct: 318 CLLDGKLKEAAELYETMGSKGCPPDAHTYSILIHGLCKLGRLGSAMKLLREME-DKGFAP 376
Query: 241 RQGMVIKVAAALRA--NREMWKAVE-MIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
++ L + MW + M+E + KG + +GY ++ + R A
Sbjct: 377 S---IVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMICAVCKDRRMDDAM 433
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGL 322
+ + M +G+ P I ++ L
Sbjct: 434 RFMQEMKSQGYKPDICTYNTIIYHL 458
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 53/121 (43%), Gaps = 2/121 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T + +LC + + EA +L+ M+ CVPD Y VI A+ N+A +
Sbjct: 170 PTTFTFSIAARALCRLGRADEALTMLRSMARHGCVPDTVLYQTVIHALCAQGGVNEAATL 229
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-C 287
+ EM L MG + L + +A +++ + +GC Y +++G C
Sbjct: 230 LDEMFL-MGCSADVNTFNDIVHGLCTLGRLREAARLVDRMMIRGCVPNAITYGFLLKGLC 288
Query: 288 L 288
L
Sbjct: 289 L 289
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 57/135 (42%), Gaps = 1/135 (0%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
S +L EM+ G+ P T L+ S C +L+ MS +LE Y+ +I
Sbjct: 361 SAMKLLREMEDKGFAPSIVTYTILLHSFCRNGMWDNIRAMLEVMSDKGLSMNLEGYNGMI 420
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ R+ +DA+ M+EM + G P + L N +M +A + E L +G
Sbjct: 421 CAVCKDRRMDDAMRFMQEMK-SQGYKPDICTYNTIIYHLCNNNQMEEAEYLFENLLHEGV 479
Query: 274 PIGFQGYEVVVEGCL 288
Y ++ L
Sbjct: 480 VANAITYNTLIHALL 494
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 4/96 (4%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+++ V D L EM + PD T N L++ LC + + A +L+ + + + D+
Sbjct: 564 CKTRRVRDALELSKEMLNQELTPDIVTYNTLINGLCKMGWMHAALNLLEKLHNEDVHADI 623
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+Y+I+I AR +DA ++ V + G+ P +
Sbjct: 624 ITYNILISWHCKARLLHDASMLLNRAVTS-GITPNE 658
>gi|326490085|dbj|BAJ94116.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 641
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 9/238 (3%)
Query: 98 PKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---Q 153
P AY Y + +L + + AL +L GC P + LE C+ +
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPP----MCHVILEAACRGGGFR 160
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
S L + + G D G CN +VS++C + E ++L+ + S C PD+ SY+ V+
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ A++ +D E+M EMV +G P + A L N + E + + GC
Sbjct: 221 KGLCMAKRWDDVEELMVEMV-RVGCPPNVATFNTLIAYLCRNGLFEQVHEALSQMPEHGC 279
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y +++G + + +A + M G P + V++GL W+ A
Sbjct: 280 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 337
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 129/291 (44%), Gaps = 17/291 (5%)
Query: 44 AKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRPRSRPK- 99
A+ +++ +LL F+E C + F+ L +F QN + + E+LE L P
Sbjct: 331 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LEHGCIPDV 388
Query: 100 IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD- 157
I Y +++ + + L + A+ +L+ GC P + + L+ C+++ D
Sbjct: 389 ITYTTVINGFCKEGL--VDEAVMLLKNMSACGCKP----NTISYTIVLKGLCRAERWVDA 442
Query: 158 --ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
++ M G P+ T N L++ +C + +A ++LK M C PDL SYS VI
Sbjct: 443 QELISHMIQQGCLPNPVTFNTLINFMCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDG 502
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ A KT +A+E++ M+ N G+ P + +A+AL K ++M + ++
Sbjct: 503 LGKAGKTEEALELLNVMI-NKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRS 561
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V+ + E A M G +P ++ GLA G
Sbjct: 562 DAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEG 612
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DIL M S G P+ N ++ LC+ ++ EA +L M +C D +++I++
Sbjct: 304 DILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFF 363
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +E++++M L G +P V + +AV +++ + GC
Sbjct: 364 CQNGLVDRVIELLEQM-LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 422
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y +V++G ++ A + + M ++G +P
Sbjct: 423 TISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 456
>gi|224126843|ref|XP_002319940.1| predicted protein [Populus trichocarpa]
gi|222858316|gb|EEE95863.1| predicted protein [Populus trichocarpa]
Length = 555
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 123/267 (46%), Gaps = 14/267 (5%)
Query: 80 KVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
++++E + F ++ P + L + L++L A +L +P
Sbjct: 245 RLVNEAVHIFCKMKGTGILPTVVTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMP----D 300
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ S ++ C+ V++ IL M +G PD T N L++ C ++VEA KV +
Sbjct: 301 LVAFSVLIDIMCKEGEVSEARVILKTMTEMGVEPDVATYNTLMNGYCLRMEVVEARKVFE 360
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S +PD+ S+SI++ A++ ++A ++ EM + GL+P + + L
Sbjct: 361 VMISKGRMPDVFSFSILVNGYCKAKRIDEAKQLFDEMT-HRGLIPDTVSYNTLISGLCQA 419
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKV 314
R +A E+ + + G P Y ++++ CL + Y+ + M G P +
Sbjct: 420 RRPLEAEELFKDMHSNGYPPNLVTYSILLD-CLSKQGYLDQAMGLFRAMENSGLKPDLVT 478
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
+++G+ G++K A R+ FAEL
Sbjct: 479 YNIMIDGMCKYGKFKDA---RELFAEL 502
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 132/310 (42%), Gaps = 33/310 (10%)
Query: 25 LRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDE 84
L S SS R T R DA L +F N NP + F + V +
Sbjct: 56 LHSSSSYRHKNRTFRNINDA---------LSAFNHMV-NTNPLPSIVKFGELFSALVRMK 105
Query: 85 MLESFIPL-RPRSRPKIAYDYLLSYTLQ-----SLHPLPLALAILQRTLRSGCVP-VPQI 137
++ + L + I++D +LS T+ L + ++L + ++ G P V
Sbjct: 106 HYKTVVSLSKQMEMAGISHD-VLSLTILINCFCRLCHVDYGFSVLGKIIKLGLEPNVITF 164
Query: 138 RLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
L++ +E + ++ + D+ M + GY P+ + + ++ LC + + E K+L+
Sbjct: 165 STLINGFCIEGKIGRAIELFDV---MVARGYKPNVHSYSIIIKGLCRVGKTTEVIKLLEH 221
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C PD+ Y+ ++ + R N+AV + +M G++P V+ + + R
Sbjct: 222 MKVVGCEPDVVIYNTIVDRLCKDRLVNEAVHIFCKMK-GTGILP---TVVTYTSLIHGLR 277
Query: 257 EMWKAVEMIEFL-ERKGCPI--GFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIPY 311
+ + E L E KG I + V+++ + C+E ++ V+ MTE G P
Sbjct: 278 NLGRWKEAFGLLNEMKGGNIMPDLVAFSVLID--IMCKEGEVSEARVILKTMTEMGVEPD 335
Query: 312 IKVRQKVVEG 321
+ ++ G
Sbjct: 336 VATYNTLMNG 345
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 79/211 (37%), Gaps = 38/211 (18%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV------------------- 188
R ++ V +L MK +G PD N +V LC D+LV
Sbjct: 208 RVGKTTEVIKLLEHMKVVGCEPDVVIYNTIVDRLCK-DRLVNEAVHIFCKMKGTGILPTV 266
Query: 189 -----------------EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
EA +L M +PDL ++S++I M + ++A ++K
Sbjct: 267 VTYTSLIHGLRNLGRWKEAFGLLNEMKGGNIMPDLVAFSVLIDIMCKEGEVSEARVILKT 326
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
M MG+ P + E+ +A ++ E + KG + ++V G + +
Sbjct: 327 MT-EMGVEPDVATYNTLMNGYCLRMEVVEARKVFEVMISKGRMPDVFSFSILVNGYCKAK 385
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + MT RG IP ++ GL
Sbjct: 386 RIDEAKQLFDEMTHRGLIPDTVSYNTLISGL 416
>gi|224132422|ref|XP_002328265.1| predicted protein [Populus trichocarpa]
gi|222837780|gb|EEE76145.1| predicted protein [Populus trichocarpa]
Length = 742
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 98/240 (40%), Gaps = 27/240 (11%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L+ +R GC P +LL S W E R ++L +M GY D TCN +
Sbjct: 324 ANNVLREMMRDGCSPNNYTCNILLYSLWKEGRISE--AEELLQKMNEKGYVIDTVTCNIV 381
Query: 178 VSSLCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIG 214
+ LC +L +A +++ GM S +C+PDL SYS +I
Sbjct: 382 IDGLCNNGKLDKAIEIVNGMWTHGSAALGNLGNSYIGLVDDSDSRKKCMPDLISYSTIIS 441
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A + +A + EM + L P + + ++ A +++ +E+KGC
Sbjct: 442 GLCKAGRVGEAKKKFIEM-MGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCN 500
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Q Y ++ G + + M ERG P + + V+ L G K A V
Sbjct: 501 KTLQTYNSLIMGLGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSV 560
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 112/263 (42%), Gaps = 4/263 (1%)
Query: 82 IDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
+ E + FI + ++ +P A + ++ + A +L+ + GC Q
Sbjct: 449 VGEAKKKFIEMMGKNLQPDSAIYDVFIHSFCKEGKISSAFRVLKDMEKKGCNKTLQTYNS 508
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L L + Q + ++ EM+ G PD N ++SSLC ++ +A VL M
Sbjct: 509 LIMG-LGSKNQIFEIYGLIDEMRERGVSPDVSIYNNVLSSLCEGGRVKDAPSVLDEMLQK 567
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
P++ S+SI+I A A + AV+ + E+ LN+ ++ + L E+ K
Sbjct: 568 GISPNISSFSILIKAFCKACDFS-AVDEIFEIALNV-CGHKEALYSLTFNELLVGGEVVK 625
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A E+ E + +G Y+ +++ + + A + + ++G+ V++
Sbjct: 626 AKELFETALDRSFDVGNFLYKDLIDHLCKDEKLDDASGILHKLIDKGYWFDPASFMPVID 685
Query: 321 GLAGVGEWKLATVVRQRFAELKS 343
GL G A + ++ E+ S
Sbjct: 686 GLGKRGNKHEADELAEKMMEMAS 708
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 71/150 (47%), Gaps = 1/150 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM +G P+ + N ++ LC L +A +++ M+S+ +PD +Y+ ++
Sbjct: 257 VLKEMVDMGMEPNVYSYNIVMDGLCKNGVLFDARMLMRLMTSSGVLPDTVTYTTLLHGYC 316
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K ++A +++EM+ + G P + +L + +A E+++ + KG I
Sbjct: 317 HTGKVSEANNVLREMMRD-GCSPNNYTCNILLYSLWKEGRISEAEELLQKMNEKGYVIDT 375
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERG 307
+V++G + A + V GM G
Sbjct: 376 VTCNIVIDGLCNNGKLDKAIEIVNGMWTHG 405
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A + + GC P +L + S+ + ++L EM+ +G+ P+ N
Sbjct: 72 LDDARELFDKMPEKGCEPNEYSFGILVRGYCRAGFTSKGL-ELLGEMRRLGFSPNKVVYN 130
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+SS C + +A K++ M PD+ +++ I A+ ++ K +A + ++M ++
Sbjct: 131 TLISSFCKEGKTDDAEKLVDEMRKDGLSPDVVTFNARISALCSSGKVLEASRIFRDMQID 190
>gi|255585033|ref|XP_002533225.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526957|gb|EEF29157.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 605
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 76/154 (49%), Gaps = 1/154 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+LL+MK+ G P+ T N LVS C + L EAA+V+ M+ +PD+ +Y+ +IG +
Sbjct: 104 DLLLDMKNNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDVRTYTTLIGGL 163
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K ++A + EM N+ L+P + K E+I+ +E KG
Sbjct: 164 CKDGKIDEAFRLRDEME-NLKLLPHVVTYNMLINGCFECSSSLKGFELIDEMEGKGVKPN 222
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y VVV+ ++ + AG + M E GF P
Sbjct: 223 AVTYNVVVKWYVKEGKMDNAGNELRKMEESGFSP 256
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 58/129 (44%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I ++ +G + T N L+ C ++L EA ++ M C PD SY+ ++ +
Sbjct: 35 IFSDVIKLGVEVNTNTFNILICGCCIENKLSEAIGLIGKMKHFSCFPDNVSYNTILDVLC 94
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K N+A +++ +M N GL P + + + + +A E+I+ + R
Sbjct: 95 KKGKLNEARDLLLDMK-NNGLFPNRNTFNILVSGYCKLGWLKEAAEVIDIMARNNVLPDV 153
Query: 278 QGYEVVVEG 286
+ Y ++ G
Sbjct: 154 RTYTTLIGG 162
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/85 (23%), Positives = 42/85 (49%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + + + + L +M+ G+ PDC T N L + C +L EA +++ MS
Sbjct: 232 WYVKEGKMDNAGNELRKMEESGFSPDCVTFNTLSNGYCKAGRLSEAFRMMDEMSRKGLKM 291
Query: 205 DLESYSIVIGAMSTARKTNDAVEMM 229
+ + + ++ + RK +DA +++
Sbjct: 292 NSVTLNTILHTLCGERKLDDAYKLL 316
>gi|302806665|ref|XP_002985064.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
gi|300147274|gb|EFJ13939.1| hypothetical protein SELMODRAFT_424099 [Selaginella moellendorffii]
Length = 1636
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 100/216 (46%), Gaps = 8/216 (3%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L LP A + L +++ C P ++ ++ ++ C+S+ + D
Sbjct: 473 PDVVAYSILIHALCKAKRLPEAESWLDVMVKNRCYP----DVVTYNSVVDGLCKSRRIND 528
Query: 158 ILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L M++ G PD T + ++ S C + L A K+L+ M A+CVPD+ +YS +I
Sbjct: 529 AFLLFDRMRAAGVMPDVVTYSIVIHSFCKDNNLDSAFKMLERMKEAKCVPDVVTYSALIN 588
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A + A ++ +EM L G P + L ++ +A EM+E + ++ C
Sbjct: 589 GLCKAGTVDKAFDVFQEM-LGCGCAPNLVTYNTLIDGLCKINKVEQAAEMLEIMRKQSCT 647
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ G A + + M ++G +P
Sbjct: 648 PDSITYTCLINGLCNASRLEEAWRVLREMKDKGCLP 683
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 92/206 (44%), Gaps = 5/206 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYL 177
A +L+ + GC P +L A+ +C A L+E M GY P+ T N L
Sbjct: 1037 AYHLLEEMVDGGCQPNVVTYTVLLDAFC--KCGKAEDAIGLVEVMVEKGYVPNLFTYNSL 1094
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C D++ A ++L M CVP++ SY+ VI + A K ++ V ++++M+ N
Sbjct: 1095 LDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAGLCKATKVHEGVLLLEQMLSN-N 1153
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+P + A+ + A E+ ++ GC Y +V G + R + A
Sbjct: 1154 CVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESGCTPNLVTYNSLVHGLCKSRRFDQAE 1213
Query: 298 KTVMGMTER-GFIPYIKVRQKVVEGL 322
+ MT + G P I V++GL
Sbjct: 1214 YLLREMTRKQGCSPDIITYNTVIDGL 1239
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 84/185 (45%), Gaps = 4/185 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM G G ++ LC Q +A + MS C PD +Y+ +I +
Sbjct: 182 ELFDEMNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGL 240
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPI 275
S + + +DA+ +++EMV N G P V +ANR + A+ ++E + +GCP
Sbjct: 241 SKSDRLDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANR-VENALWLLEQMVTRGCPP 298
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y V+ G + + A + + M +RG P + +V+G VG+ A +
Sbjct: 299 DVVSYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELV 358
Query: 336 QRFAE 340
++ E
Sbjct: 359 RKMTE 363
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 86/179 (48%), Gaps = 16/179 (8%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY+ D TCN L+ +L + + +A +V + + C P++ +++I+I + A A
Sbjct: 839 GYNHDTYTCNCLLQALLRLKRPKDALQVYR--NKLCCSPNMFTFTILIHGLCRAGDIGTA 896
Query: 226 VEMMKEMVLNMGLMPRQGM---VI---KVAAALRANREMWKAVEMIEFLERKG-CPIGFQ 278
E++KE MPR G+ VI V L + R++ A+E+ + +E G CP
Sbjct: 897 YELLKE-------MPRHGVPQNVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVF 949
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +V+ ++ + A + V M +G P + ++ GL G+ AT + QR
Sbjct: 950 TYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQR 1008
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/285 (22%), Positives = 117/285 (41%), Gaps = 12/285 (4%)
Query: 57 FEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPK-IAYDYLLSYTLQSLH 114
+ CQ PN ++ + R+ +D +E + R RP I Y+ ++ + +
Sbjct: 327 IQRGCQ-PNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIM-HVFCRRN 384
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDC 171
+ A +LQ +++GC P + S + C++ + D+L +M G PD
Sbjct: 385 DMERAHQVLQMMIQTGCPP----DAINYSTIISGFCKAGKLREAHDLLEQMIRRGCRPDV 440
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
+ L+ +LC + A ++L+ +C PD+ +YSI+I A+ A++ +A +
Sbjct: 441 ACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHALCKAKRLPEAESWLDV 500
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
MV N P V L +R + A + + + G Y +V+ +
Sbjct: 501 MVKNR-CYPDVVTYNSVVDGLCKSRRINDAFLLFDRMRAAGVMPDVVTYSIVIHSFCKDN 559
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
A K + M E +P + ++ GL G A V Q
Sbjct: 560 NLDSAFKMLERMKEAKCVPDVVTYSALINGLCKAGTVDKAFDVFQ 604
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 78/171 (45%), Gaps = 8/171 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +++ + GC P ++ S+ L C++ + + +L M G P+ T N
Sbjct: 967 ACRLVEDMVSKGCSP----NVVTYSSLLHGLCKAGKLDEATALLQRMTRSGCSPNIVTYN 1022
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C + ++ EA +L+ M C P++ +Y++++ A K DA+ +++ MV
Sbjct: 1023 TIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDAIGLVEVMV-E 1081
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G +P + E+ +A +++ + +KGC Y V+ G
Sbjct: 1082 KGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTVIAG 1132
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 71/171 (41%), Gaps = 4/171 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L AL ILQ L G P + + WL +R + + ++L M G PD T N
Sbjct: 1315 LDKALEILQLLLSKGSYP-DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYN 1373
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C +A + + M C PD +Y+ ++G + + D + + + +++
Sbjct: 1374 TLLKGFCDASLTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVD 1433
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G + K+ A++ ++ +++ + G P Q V EG
Sbjct: 1434 TGFKLNHELSSKLEASIEVEADVRLGCAIVDMFGKCGSP---QDARKVFEG 1481
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 77/163 (47%), Gaps = 3/163 (1%)
Query: 150 CQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
C + +D +L + + PD T N +++ L D+L +A ++L+ M P++
Sbjct: 207 CDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVF 266
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
SY+ V+ A + +A+ ++++MV G P V L ++ +A +++
Sbjct: 267 SYNTVLHGFCKANRVENALWLLEQMV-TRGCPPDVVSYTTVINGLCKLDQVDEACRVMDK 325
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ ++GC Y +V+G + A + V MTERG+ P
Sbjct: 326 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRP 368
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 114/275 (41%), Gaps = 16/275 (5%)
Query: 57 FEEACQN---PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTL 110
EE N PN FS+ L F + +R++ +LE + R ++Y +++ L
Sbjct: 253 LEEMVDNGFAPNVFSYNTVLHGFCKANRVENALWLLEQMVT-RGCPPDVVSYTTVIN-GL 310
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGY 167
L + A ++ + ++ GC P ++ ++ C+ +++ +M GY
Sbjct: 311 CKLDQVDEACRVMDKMIQRGCQP----NVITYGTLVDGFCRVGDLDGAVELVRKMTERGY 366
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
P+ T N ++ C + + A +VL+ M C PD +YS +I A K +A +
Sbjct: 367 RPNAITYNNIMHVFCRRNDMERAHQVLQMMIQTGCPPDAINYSTIISGFCKAGKLREAHD 426
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++++M+ G P + + AL + A E++ C Y +++
Sbjct: 427 LLEQMI-RRGCRPDVACLSTLIDALCKAAAIDSAQELLRMSIGMDCAPDVVAYSILIHAL 485
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ + A + M + P + VV+GL
Sbjct: 486 CKAKRLPEAESWLDVMVKNRCYPDVVTYNSVVDGL 520
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 55/254 (21%), Positives = 113/254 (44%), Gaps = 27/254 (10%)
Query: 76 NHRIKVIDEMLESFIPL-RPRS-----------RPKIAYDYLLSYTLQSLHPLPLALAIL 123
NH + +L++ + L RP+ P + +L + L + A +L
Sbjct: 841 NHDTYTCNCLLQALLRLKRPKDALQVYRNKLCCSPNMFTFTILIHGLCRAGDIGTAYELL 900
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVADILLEMKSIGY-HPDCGTCNYLVS 179
+ R G VPQ ++L + ++ C ++ S ++ EM+ G PD T + +V
Sbjct: 901 KEMPRHG---VPQ-NVILHNVVIKGLCSARKLDSALELFKEMEESGSCPPDVFTYSTIVD 956
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
SL ++ +A ++++ M S C P++ +YS ++ + A K ++A +++ M + G
Sbjct: 957 SLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMTRS-GCS 1015
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILA 296
P ++ + + ++ + E LE GC Y V+++ +C + A
Sbjct: 1016 PN---IVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFCKCGKAEDA 1072
Query: 297 GKTVMGMTERGFIP 310
V M E+G++P
Sbjct: 1073 IGLVEVMVEKGYVP 1086
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 36/158 (22%), Positives = 69/158 (43%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T L+ LC + A ++LK M ++ +++VI + +ARK + A+E+
Sbjct: 875 PNMFTFTILIHGLCRAGDIGTAYELLKEMPRHGVPQNVILHNVVIKGLCSARKLDSALEL 934
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
KEM + P + +L + ++ A ++E + KGC Y ++ G
Sbjct: 935 FKEMEESGSCPPDVFTYSTIVDSLVKSGKVDDACRLVEDMVSKGCSPNVVTYSSLLHGLC 994
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + A + MT G P I +++G +G
Sbjct: 995 KAGKLDEATALLQRMTRSGCSPNIVTYNTIIDGHCKLG 1032
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 9/213 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILL-EM-KSIGYHP 169
+ + +A + SGC P L+ ++ + C+S+ A+ LL EM + G P
Sbjct: 1172 YRVDIAYELFNLIQESGCTP----NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 1227
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T N ++ LC ++ A K+ M S PD +YSIVI ++ R ++A ++
Sbjct: 1228 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVL 1287
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
E++L G P + + KA+E+++ L KG + + ++ +
Sbjct: 1288 -ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 1346
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
AG+ + M G +P +++G
Sbjct: 1347 RGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 1379
>gi|224146290|ref|XP_002325952.1| predicted protein [Populus trichocarpa]
gi|222862827|gb|EEF00334.1| predicted protein [Populus trichocarpa]
Length = 432
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 53/196 (27%), Positives = 84/196 (42%), Gaps = 1/196 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RRC + V DI EM+ G+ + NYL+S L + +A KVL M +C PD
Sbjct: 236 RRCDFKGVRDIQDEMRKEGFELNARIYNYLISCLLKNGEYADACKVLTEMQDKDCPPDAL 295
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
++ I I KT A E+V GL PR + + +A + +
Sbjct: 296 TFEIFIYYCCNNGKTEIACHYFDEIVAR-GLEPRLSTHAAFIKGFFNSEQYEEAYKYVVD 354
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++K Y ++ + ++A + M ++G PY KV KV L G
Sbjct: 355 SDKKYKCTSCMNYSLLARLHQKRGNLVIAQNILSEMIKKGLRPYFKVYMKVFNCLNKSGR 414
Query: 328 WKLATVVRQRFAELKS 343
LAT ++++F +L S
Sbjct: 415 ETLATDLQEQFHQLHS 430
>gi|125590530|gb|EAZ30880.1| hypothetical protein OsJ_14954 [Oryza sativa Japonica Group]
Length = 442
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 61/240 (25%), Positives = 107/240 (44%), Gaps = 8/240 (3%)
Query: 90 IPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+P++P AY Y L +TL + AL++L L GC P +L A +
Sbjct: 1 MPVQPN-----AYTYNPLIHTLCERGQVRDALSVLDDMLCRGCAPDVVTYNILLEATCKG 55
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R Q++ I L M++ G P+ T N L+ +C + +A ++L+ + S C P +
Sbjct: 56 RGYRQAMELIDL-MRAEGCTPNNVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVN 114
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ V+ + +A + DA E++ EM L P + V +L + +A++++E +
Sbjct: 115 YNTVLKGLCSAERWGDADELVTEM-LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKM 173
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ GC Y ++ G E R A + M G P I +++GL W
Sbjct: 174 SKHGCTANIVTYNAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARW 233
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 60/244 (24%), Positives = 117/244 (47%), Gaps = 11/244 (4%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
LR P A ++ Y+L L A+ +L++ + GC ++ +A + C+
Sbjct: 139 LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCTA----NIVTYNAIINGLCE 194
Query: 152 SQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
++V +L +MKS G PD T N L+ LC+ + V+A +++ M+ C+PD +
Sbjct: 195 QRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAARWVDAEELMDNMTQNGCLPDNVT 254
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
++ +IG + DA+E+ K+M + G P + + L ++ +A+E+ +
Sbjct: 255 FNTLIGFLCQKGLMVDAIEVFKQMP-DKGCTPNSITYSTIISGLAKATKLDQALELFNEM 313
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYI-LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
KG + Y+++ E CL + I A +TV + + G P+ + ++ GL G+
Sbjct: 314 GHKGFNPD-KIYQLLAE-CLNDDDTIEEAIQTVRKLQDSGISPHTVLYNAILLGLCRNGK 371
Query: 328 WKLA 331
+ A
Sbjct: 372 TEFA 375
>gi|449476381|ref|XP_004154721.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 29/236 (12%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+L+ ++ GC P + +LL S W E R + D+L M GY D TCN +++
Sbjct: 423 VLREMIQVGCFPNMYTCNILLHSLWKEGR--ASEAEDLLQMMNERGYGLDNVTCNTMING 480
Query: 181 LCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIGAMS 217
LC L +A +++ GM + +C+PD +Y+ +IG +
Sbjct: 481 LCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLC 540
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A + + EM+ L P + ++ A +++ +E+KGC
Sbjct: 541 KVGRVDEAKKKLLEMI-GKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSL 599
Query: 278 QGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ Y +++G L I +M M ERG P + ++ L+ G+ K AT
Sbjct: 600 RTYNSLIQG-LGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDAT 654
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/234 (21%), Positives = 97/234 (41%), Gaps = 3/234 (1%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
+ +P+ LL L + L A + + GC P +L + S
Sbjct: 148 KVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHG 207
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ D+L EM+S G P+ N ++SSLC Q VEA K+++ M PD+ +++ I
Sbjct: 208 I-DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIA 266
Query: 215 AMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
A+ + + +A + ++M ++ MGL + + + M++ I +
Sbjct: 267 ALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNS 326
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + Y + + G + + + A + M E+ P + +V GL G
Sbjct: 327 ETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYG 380
>gi|449454285|ref|XP_004144886.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
gi|449472527|ref|XP_004153621.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Cucumis sativus]
Length = 875
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 102/236 (43%), Gaps = 29/236 (12%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+L+ ++ GC P + +LL S W E R + D+L M GY D TCN +++
Sbjct: 423 VLREMIQVGCFPNMYTCNILLHSLWKEGR--ASEAEDLLQMMNERGYGLDNVTCNTMING 480
Query: 181 LCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIGAMS 217
LC L +A +++ GM + +C+PD +Y+ +IG +
Sbjct: 481 LCKAGNLDKAIEIVSGMWTRGSASLGNLGNSFIDLFDIRNNGKKCLPDSITYATIIGGLC 540
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A + + EM+ L P + ++ A +++ +E+KGC
Sbjct: 541 KVGRVDEAKKKLLEMI-GKKLSPDSLIFDTFIYNYCKQGKLSSAFRVLKEMEKKGCNKSL 599
Query: 278 QGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ Y +++G L I +M M ERG P + ++ L+ G+ K AT
Sbjct: 600 RTYNSLIQG-LGSENQIFEIYGLMDEMKERGIFPNVYTYNNIISCLSEGGKLKDAT 654
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 97/234 (41%), Gaps = 3/234 (1%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
R +P+ LL L + L A + + GC P +L + S
Sbjct: 148 RVKPQTYTFNLLISALCEMGYLENAREVFDKMSEKGCKPNEFSLGILVRGYCRAGLHSHG 207
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ D+L EM+S G P+ N ++SSLC Q VEA K+++ M PD+ +++ I
Sbjct: 208 I-DLLDEMRSSGALPNRVAYNTVISSLCGEGQTVEAEKLVEKMREVGLSPDIVTFNCRIA 266
Query: 215 AMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
A+ + + +A + ++M ++ MGL + + + M++ I +
Sbjct: 267 ALCKSGQILEASRIFRDMQIDEEMGLPKPNTVTYNLMLEGFCSEGMFEEARAIFDSMKNS 326
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + Y + + G + + + A + M E+ P + +V GL G
Sbjct: 327 ETLSLRSYNIWMLGLVRSGKLLEAHLILNEMAEKNIKPNLYSYNILVHGLCKYG 380
>gi|242043130|ref|XP_002459436.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
gi|241922813|gb|EER95957.1| hypothetical protein SORBIDRAFT_02g004626 [Sorghum bicolor]
Length = 684
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 97/215 (45%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GCVP + + A + + +++ A +L EM +G D T N +V
Sbjct: 199 ALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEA-ATLLDEMLLMGCAADVNTFNDVV 257
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + + EAA+++ M C P + +Y ++ + R+ ++A M +G
Sbjct: 258 LGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQADEAYAM-------LGR 310
Query: 239 MPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+P +V+ V A ++ +A E+ E + KGCP Y +++ G + A
Sbjct: 311 VPEVNVVMLNTVIRGCLAEGKLARATELYEMMGSKGCPPDVHTYNILMHGLCKLGRCGSA 370
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M E+G P I ++ G W A
Sbjct: 371 VRMLDEMEEKGCAPNIVTYSTLLHSFCRNGMWDDA 405
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 70/168 (41%), Gaps = 1/168 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD T N L+ LC + + A ++L M C P++ +YS ++ +
Sbjct: 342 MGSKGCPPDVHTYNILMHGLCKLGRCGSAVRMLDEMEEKGCAPNIVTYSTLLHSFCRNGM 401
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+DA M+ +M M QG + AL + ++ +A+ +++ ++ +GC Y
Sbjct: 402 WDDARAMLDQMSAKGFSMNSQG-YNGIIYALGKDGKLDEAMRLVQEMKSQGCKPDICTYN 460
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
++ + A + E G + ++ L G W+
Sbjct: 461 TIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSGRWQ 508
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 77/176 (43%), Gaps = 8/176 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMKS G PD T N ++ LC DQ+ EA + + V + +Y+ +I A+ +
Sbjct: 446 EMKSQGCKPDICTYNTIIYHLCNNDQMDEAEHIFGNLLEEGVVANGITYNTLIHALLHSG 505
Query: 221 KTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + + + EMVL+ + ++ G++ + +R M ++E + KG
Sbjct: 506 RWQEGLRLANEMVLHGCPLDVVSYNGLIKALCKEGNVDRSMM----LLEEMMTKGIKPNN 561
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y +++ + + A + M +G P I ++ GL VG W A +
Sbjct: 562 FSYNMLINELCKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVG-WTHAAL 616
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 54/104 (51%), Gaps = 7/104 (6%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ V D L EM + G PD T N L++ LC + A +L+ + + PD+
Sbjct: 572 CKAGKVRDALELSKEMLNQGLTPDIVTYNTLINGLCKVGWTHAALNLLEKLPNENVHPDI 631
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIK 247
+Y+I+I R +DA M+ + ++ G++P + GM+++
Sbjct: 632 VTYNILISWHCKVRLLDDA-SMLLDKAVSGGIVPNERTWGMMVQ 674
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/113 (24%), Positives = 49/113 (43%), Gaps = 1/113 (0%)
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+LC + + +A +L+GM+ CVPD Y VI A+ +A ++ EM+L MG
Sbjct: 189 ALCRLGRARDALALLRGMARHGCVPDAVLYQTVIHALVAQGGVAEAATLLDEMLL-MGCA 247
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V L + +A +++ + GC Y ++ G R+
Sbjct: 248 ADVNTFNDVVLGLCGLGHVREAARLVDRMMMHGCTPSVVTYGFLLRGLCRTRQ 300
>gi|302787647|ref|XP_002975593.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
gi|300156594|gb|EFJ23222.1| hypothetical protein SELMODRAFT_103638 [Selaginella moellendorffii]
Length = 471
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 88/194 (45%), Gaps = 8/194 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A + ++ + SGC P S L C+++ V D +L EM IG PD T N
Sbjct: 273 AEEMFKKMVASGCAPNGATY----SIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVVTYN 328
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + + +A ++ M C PD+ SYS+V+ + K +DA + M+
Sbjct: 329 ILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMI-E 387
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L+P + L ++ +A ++++ + GC + Y ++ G + +I
Sbjct: 388 RKLVPDVVTFNILMDGLCKAGKLDEAKDLLDQMTCSGCAPDYVAYNTLMNGLRKQGRHIQ 447
Query: 296 AGKTVMGMTERGFI 309
A + M E+GF+
Sbjct: 448 ADRLTQAMKEKGFL 461
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/204 (24%), Positives = 96/204 (47%), Gaps = 8/204 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLV 178
+ + + GC + +A + C+ +++ +L EM S GY PD T N ++
Sbjct: 136 LFHKMIERGC----SANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITYNTIL 191
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S LC + ++ EA + M S PD+ +Y+ ++ A+ KT++A+++ K+ V+ G
Sbjct: 192 SGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEAMKLFKD-VIAKGY 250
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + L M +A EM + + GC Y +V+ G ++ A K
Sbjct: 251 MPDTVTYNSILLGLARKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHK 310
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
+ M++ G +P + +++GL
Sbjct: 311 VLEEMSKIGAVPDVVTYNILLDGL 334
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 74/171 (43%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM S+G P T N L+++ C ++ EA ++ K M+ PD+ +YS +I +
Sbjct: 68 EMVSVGLEPSIYTYNSLLNAFCKETKMKEAMELFKTMAEKGFEPDVVTYSTIISGLCKTG 127
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A+EM+ ++ G + L + + +A +++E + KG Y
Sbjct: 128 KVTEALEMLFHKMIERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYVPDNITY 187
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G + A + M RG+ P + +++ L G+ A
Sbjct: 188 NTILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKTDEA 238
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 68/148 (45%), Gaps = 6/148 (4%)
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLE 147
+P R S +AY+ LL L A+ + + + G +P V +LL L
Sbjct: 210 MPSRGYSPDVVAYNGLLD-ALYKEGKTDEAMKLFKDVIAKGYMPDTVTYNSILLG---LA 265
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ ++ +M + G P+ T + ++S C ++ +A KVL+ MS VPD+
Sbjct: 266 RKSNMDEAEEMFKKMVASGCAPNGATYSIVLSGHCRAKKVDDAHKVLEEMSKIGAVPDVV 325
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+Y+I++ + + A E+ MV N
Sbjct: 326 TYNILLDGLCKTNLVDKAHELFSTMVDN 353
>gi|225428276|ref|XP_002279589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g17140
[Vitis vinifera]
gi|297744485|emb|CBI37747.3| unnamed protein product [Vitis vinifera]
Length = 878
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 98/238 (41%), Gaps = 27/238 (11%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A IL +R GC P +LL S W E R +L +M Y D TCN +
Sbjct: 419 ANNILHEMMRRGCSPNTYTCNILLHSLWKEGRIFE--AEKLLQKMNERSYDLDNVTCNIV 476
Query: 178 VSSLCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIG 214
+ LC +L EA ++++GM + +C+PDL +YSI+I
Sbjct: 477 IDGLCKSGKLDEAVEIVEGMWIHGSAALGNLGNSFIGLVDSSSNGKKCLPDLITYSIIIN 536
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A + ++A + EMV L P + + + ++ A +++ +E++GC
Sbjct: 537 GLCKAGRLDEARKKFIEMV-GKSLHPDSIIYDTFIHSFCKHGKISSAFRVLKDMEKRGCN 595
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Q Y ++ G + + M E+G P I ++ L G K AT
Sbjct: 596 KSLQTYNSLILGLGSKNQIFEIYGLLDDMKEKGITPNICTYNNMISCLCEGGRIKDAT 653
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 83/178 (46%), Gaps = 3/178 (1%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
S ++L M S G P+ N L+SS C + EA ++++ M PD+ +++
Sbjct: 202 SMRALELLDGMGSFGVQPNKVIYNTLISSFCREGRNEEAERLVERMREDGLFPDVVTFNS 261
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANRE--MWKAVEMIEFL 268
I A+ +A K +A + ++M ++ L +PR + +E + +A ++E +
Sbjct: 262 RISALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESM 321
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+R G + + Y + + G + + + A + M ++G P I V++GL G
Sbjct: 322 KRNGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVDKGIEPNIYSFNTVMDGLCKNG 379
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 43/215 (20%), Positives = 96/215 (44%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L G P I L S++ R +++ ++ M+ G PD T N +
Sbjct: 205 ALELLDGMGSFGVQPNKVIYNTLISSFC-REGRNEEAERLVERMREDGLFPDVVTFNSRI 263
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECV----PDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
S+LC+ +++EA+++ + M E + P++ ++++++ +A +++ M
Sbjct: 264 SALCSAGKILEASRIFRDMQIDEELGLPRPNITTFNLMLEGFCKEGMLEEAKTLVESMKR 323
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N LM + I + +R + + + + E ++ KG + V++G C+ +
Sbjct: 324 NGNLMELESYNIWLLGLVRNGKLLEAQLALKEMVD-KGIEPNIYSFNTVMDGL--CKNGL 380
Query: 295 LA-GKTVMG-MTERGFIPYIKVRQKVVEGLAGVGE 327
++ + +MG M G P ++ G G+
Sbjct: 381 ISDARMIMGLMISSGIGPDTVTYSTLLHGCCSTGK 415
>gi|15236546|ref|NP_194913.1| proton gradient regulation 3 [Arabidopsis thaliana]
gi|75213543|sp|Q9SZ52.1|PP344_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g31850, chloroplastic; AltName: Full=Protein PROTON
GRADIENT REGULATION 3; Flags: Precursor
gi|4584524|emb|CAB40755.1| putative protein [Arabidopsis thaliana]
gi|7270088|emb|CAB79903.1| putative protein [Arabidopsis thaliana]
gi|332660567|gb|AEE85967.1| proton gradient regulation 3 [Arabidopsis thaliana]
Length = 1112
Score = 68.2 bits (165), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 7/267 (2%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYL--LSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ +D+ LE F + AY Y+ + Y +S + AL ++ G P
Sbjct: 410 RVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS-ALETFEKMKTKGIAP-- 466
Query: 136 QIRLLLSSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
I +S + L + + + I +K IG PD T N ++ + ++ EA K+L
Sbjct: 467 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 526
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C PD+ + +I + A + ++A +M M M L P + A L
Sbjct: 527 SEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK-EMKLKPTVVTYNTLLAGLGK 585
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
N ++ +A+E+ E + +KGCP + + + + E LA K + M + G +P +
Sbjct: 586 NGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFT 645
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K A + +L
Sbjct: 646 YNTIIFGLVKNGQVKEAMCFFHQMKKL 672
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + +R + G P Q L +RR SV +L EM+++G P+ T +
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRR-DIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA ++LK M C PD+ +Y+++I A+ TARK + A E+ ++M
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH- 324
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + NR++ + +E+ G + ++V+ + + A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
T+ M ++G +P + ++ GL
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGL 408
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ L++KS G PD T N+L+ + ++ E ++ K MS+ EC + +++IVI +
Sbjct: 806 DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A +DA+++ +++ + P + L + +++A ++ E + GC
Sbjct: 866 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ G + E A M + G P +K +V+ L VG
Sbjct: 926 CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 975
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 97/262 (37%), Gaps = 15/262 (5%)
Query: 12 LVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLS 71
L FRP L +SSL R +D + LL E PN ++F
Sbjct: 216 LEGFRPSLQTYSSLMVGLGKR------------RDIDSVMGLLKEMETLGLKPNVYTFTI 263
Query: 72 NFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
R I+E E + P + +L L + L A + ++
Sbjct: 264 CIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGR 323
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P + L + + R SV EM+ G+ PD T LV +LC EA
Sbjct: 324 HKPDRVTYITLLDRFSDNR-DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
L M +P+L +Y+ +I + + +DA+E+ M ++G+ P I
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFID 441
Query: 251 ALRANREMWKAVEMIEFLERKG 272
+ + A+E E ++ KG
Sbjct: 442 YYGKSGDSVSALETFEKMKTKG 463
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + + L GC P I +L + + + ++ + + M G PD T + LV
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGF-GKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ E K + + PD+ Y+++I + + + +A+ + EM + G+
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 239 MP 240
P
Sbjct: 1029 TP 1030
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%)
Query: 150 CQSQSV--ADILLE--MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ +V A L E K +G P T N L+ L D + A V + S C+PD
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD 819
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ ++ A + K ++ E+ KEM + I ++ ++A + A+++
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGN-VDDALDLY 878
Query: 266 EFL--ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
L +R P Y +++G + A + GM + G P + ++ G
Sbjct: 879 YDLMSDRDFSPTACT-YGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 324 GVGEWKLATVVRQR 337
GE A + +R
Sbjct: 938 KAGEADAACALFKR 951
>gi|255572426|ref|XP_002527150.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533489|gb|EEF35232.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 874
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 93/218 (42%), Gaps = 27/218 (12%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L + + C P +LL S W E R ++L +M GY D TCN +
Sbjct: 415 ANNLLHEMISNNCSPNTYTCNVLLHSLWKEGRISE--AENLLQKMNEKGYGVDTVTCNII 472
Query: 178 VSSLCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIG 214
+++LC QL +A +++ GM S +C PDL +YS +I
Sbjct: 473 INALCNNGQLDKAIEIVNGMWTHGSAALGNLGNSFIGLVDDTISGKKCTPDLVTYSTIIS 532
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A + +DA + EM ++ GL P + + ++ A ++++ +E++GC
Sbjct: 533 GLCKAGRLDDAKKKFIEM-MSKGLQPDSAIYDTFIHSFCREGKISSAFQVLKDMEKRGCN 591
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
Q Y ++ G + + M E+G P +
Sbjct: 592 KTLQTYNSLILGLGSKNQIFELYGLIDEMREKGVSPDV 629
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/229 (20%), Positives = 101/229 (44%), Gaps = 5/229 (2%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
++ L+ S H L A + + GC P +L + S+ + ++L
Sbjct: 149 TFNLLIGLLCDSGH-LEDARELFDKMPARGCEPNEFTFGILVRGYCRAGLASKGL-ELLG 206
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+++G P+ N L+SS C + +A K++ M VP +E+++ I A+ +
Sbjct: 207 QMRTMGILPNNVLYNTLISSFCKEGKTHDAEKLVDKMREDGLVPHVETFNSRISALCGSG 266
Query: 221 KTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANRE--MWKAVEMIEFLERKGCPIGF 277
K +A + ++M ++ L +P ++ + +E + +A +++ ++R I
Sbjct: 267 KILEASRIFRDMQIDEELGLPHPNVITYKLMLMGFCKEGMLEEAKTLVDTMKRNANFINL 326
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y + + G + + + A + M G P I V++GL G
Sbjct: 327 ESYNIWLLGLIRNGKLLEAWIVLKEMLGIGIEPDIYSYNIVMDGLCKNG 375
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 116/266 (43%), Gaps = 10/266 (3%)
Query: 82 IDEMLESFIPLRPRS-RPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-- 137
+D+ + FI + + +P A YD + ++ + A +L+ + GC Q
Sbjct: 540 LDDAKKKFIEMMSKGLQPDSAIYDTFI-HSFCREGKISSAFQVLKDMEKRGCNKTLQTYN 598
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+L L + Q + ++ EM+ G PD T N++++ LC ++ +A VL M
Sbjct: 599 SLILG---LGSKNQIFELYGLIDEMREKGVSPDVCTYNHMLNCLCEGGRINDAPSVLDEM 655
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
P++ S+ I+I A A + E+ E+ LN+ ++ + + L +
Sbjct: 656 LQKGISPNISSFRILIKAFCKACDFKASHEVF-EIALNV-CGHKEALYTLMFNELLVGGK 713
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A E+ E + IG Y+ +++ + + A + + ++G+
Sbjct: 714 VAEAKELFETALDRSFDIGNFLYKDLIDRLCKDEKLEAASDVLHRLIDKGYQFDPASFMP 773
Query: 318 VVEGLAGVGEWKLATVVRQRFAELKS 343
V++G +G +A + +R E+ S
Sbjct: 774 VIDGFGKMGNKHVADELAERMMEMAS 799
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 38/78 (48%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM IG PD + N ++ LC L +A ++ M +PD +YS ++
Sbjct: 348 VLKEMLGIGIEPDIYSYNIVMDGLCKNGMLSDARMLMGLMIRNGILPDTVTYSTLLHGYC 407
Query: 218 TARKTNDAVEMMKEMVLN 235
+ K +A ++ EM+ N
Sbjct: 408 SKGKVFEANNLLHEMISN 425
>gi|297802850|ref|XP_002869309.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
gi|297315145|gb|EFH45568.1| hypothetical protein ARALYDRAFT_491552 [Arabidopsis lyrata subsp.
lyrata]
Length = 1114
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 7/267 (2%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYL--LSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ +D+ LE F + AY Y+ + Y +S + AL ++ G P
Sbjct: 412 RVHRLDDALEIFDNMESLGVKPTAYTYIVFIDYYGKSGDSVS-ALETFEKMKTKGIAP-- 468
Query: 136 QIRLLLSSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
I +S + L + + + I +K IG PD T N ++ + ++ EA K+L
Sbjct: 469 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 528
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C PD+ + +I + A + ++A +M M M L P + A L
Sbjct: 529 SEMVENCCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK-EMKLKPTVVTYNTLLAGLGK 587
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
N ++ +A+E+ E + +KGCP + + + + E LA K + M + G +P +
Sbjct: 588 NGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFT 647
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K A + +L
Sbjct: 648 YNTIIFGLVKNGQVKEAMCFFHQMKKL 674
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ L++K+ G PD T N+L+ + ++ E ++ K MS+ EC P+ +++IVI +
Sbjct: 808 DVFLQVKNTGCIPDVATYNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGL 867
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A +DA+++ +++ + P + L + +++A ++ E + GC
Sbjct: 868 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPN 927
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ G + E A M + G P +K +V+ L VG
Sbjct: 928 CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 977
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 93/204 (45%), Gaps = 2/204 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + +R + G P Q L +RR +SV +L EM+++G P+ T +
Sbjct: 209 AMEVYRRMILDGFRPSLQTYSSLMVGLGKRR-DIESVMGLLKEMETLGLKPNVYTFTICI 267
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA ++LK M C PD+ +Y+++I A+ TARK + A E+ +M
Sbjct: 268 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGRH- 326
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + NR++ + +E+ G + ++V+ + + A
Sbjct: 327 KPDRVTYITLLDRFSDNRDLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFA 386
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
+ M ++G +P + ++ GL
Sbjct: 387 KLDVMRDQGILPNLHTYNTLICGL 410
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 97/262 (37%), Gaps = 15/262 (5%)
Query: 12 LVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLS 71
L FRP L +SSL R +D + + LL E PN ++F
Sbjct: 218 LDGFRPSLQTYSSLMVGLGKR------------RDIESVMGLLKEMETLGLKPNVYTFTI 265
Query: 72 NFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
R I+E E + P + +L L + L A + +
Sbjct: 266 CIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFAKMKTGR 325
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P + L + + R SV EM+ G+ PD T LV +LC EA
Sbjct: 326 HKPDRVTYITLLDRFSDNR-DLDSVNQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 384
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
L M +P+L +Y+ +I + + +DA+E+ M ++G+ P I
Sbjct: 385 FAKLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALEIFDNME-SLGVKPTAYTYIVFID 443
Query: 251 ALRANREMWKAVEMIEFLERKG 272
+ + A+E E ++ KG
Sbjct: 444 YYGKSGDSVSALETFEKMKTKG 465
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 81/191 (42%), Gaps = 6/191 (3%)
Query: 151 QSQSVADILLE--MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ S A +L E K +G P T N L+ L D + A V + + C+PD+ +
Sbjct: 765 NNASGARMLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKNTGCIPDVAT 824
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ A + K ++ E+ KEM + I ++ ++A + A+++ L
Sbjct: 825 YNFLLDAYGKSGKIDELFEIYKEMSAHECEPNTITHNIVISGLVKAG-NVDDALDLYYDL 883
Query: 269 --ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+R P Y +++G + A + GM++ G P + ++ G G
Sbjct: 884 MSDRDFSPTACT-YGPLIDGLSKSGRLYEAKQLFEGMSDYGCRPNCAIYNILINGFGKAG 942
Query: 327 EWKLATVVRQR 337
E A + +R
Sbjct: 943 EADAACALFKR 953
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 24/111 (21%), Positives = 50/111 (45%), Gaps = 1/111 (0%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
GC P I +L + + + ++ + + M G PD T + LV LC + ++ E
Sbjct: 923 GCRPNCAIYNILINGF-GKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVGRVDE 981
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+ + + PD+ Y+++I + + +A+ + EM + G+ P
Sbjct: 982 GLHYFRELKESGLNPDVVCYNLIINGLGKFHRLEEALVLFNEMKKSRGITP 1032
>gi|115453829|ref|NP_001050515.1| Os03g0569800 [Oryza sativa Japonica Group]
gi|113548986|dbj|BAF12429.1| Os03g0569800 [Oryza sativa Japonica Group]
Length = 773
Score = 67.8 bits (164), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L GC P+P + ++ LE C+S + +L M + G D G CN
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVI----LEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ ++ C D+ SY+ V+ + A++ D E+M EMV
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMV-R 244
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + L N + E++ + GC + Y +++G + +
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P + V++GL WK A
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M S G PD T +++ C + EA +LK MSS C P+ SY+IV+
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA E+M +M+ G P + L + +A+E+++ + GC
Sbjct: 435 GLCSAGRWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 275 IGFQGYEVVVEG 286
Y V++G
Sbjct: 494 PDLISYSTVIDG 505
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++ +R C P + L+ +L R + V ++L +M G PD ++
Sbjct: 238 LMDEMVRVDCAPNIVTFNTLI--GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ V+ + +A + +A E++ EM P
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMF--QKDCP 353
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVING--FCKEGLIDEAV 411
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ M+ G P V++GL G W
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW 442
>gi|12583808|gb|AAG59660.1|AC084319_18 putative membrane-associated salt-inducible protein [Oryza sativa
Japonica Group]
Length = 772
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L GC P+P + ++ LE C+S + +L M + G D G CN
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVI----LEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ ++ C D+ SY+ V+ + A++ D E+M EMV
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMV-R 244
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + L N + E++ + GC + Y +++G + +
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P + V++GL WK A
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M S G PD T +++ C + EA +LK MSS C P+ SY+IV+
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA E+M +M+ G P + L + +A+E+++ + GC
Sbjct: 435 GLCSAGRWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 275 IGFQGYEVVVEG 286
Y V++G
Sbjct: 494 PDLISYSTVIDG 505
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++ +R C P + L+ +L R + V ++L +M G PD ++
Sbjct: 238 LMDEMVRVDCAPNIVTFNTLI--GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ V+ + +A + +A E++ EM P
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMF--QKDCP 353
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVING--FCKEGLIDEAV 411
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ M+ G P V++GL G W
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW 442
>gi|449527556|ref|XP_004170776.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 665
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/218 (26%), Positives = 97/218 (44%), Gaps = 12/218 (5%)
Query: 119 ALAILQRTLRSGCVPV-----PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A+ +L++ + GC P P + L +ER + + M S G +PD T
Sbjct: 371 AIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDI------MVSRGCYPDIVT 424
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N L+++LC ++ A ++L + S C P L +Y+ VI +S KT+DA++++ EM
Sbjct: 425 YNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGKTDDAIKLLDEMK 484
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
GL P + L ++ +A+ LE G Y ++ G + R+
Sbjct: 485 -GKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEMGVKPNAITYNSIMLGLCKARQT 543
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A + M RG P ++EGLA G K A
Sbjct: 544 VRAIDFLAYMVARGCKPTETSYMILIEGLAYEGLAKEA 581
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/265 (20%), Positives = 118/265 (44%), Gaps = 42/265 (15%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L TL L A+ +L R ++ C P ++ + +E C+ V
Sbjct: 213 VTYNTILR-TLCDSGKLKEAMEVLDRQMQRECYP----DVITYTILIEATCKESGVGQAM 267
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ G PD T N L++ +C +L EA + L M S C P++ +++I++ +M
Sbjct: 268 KLLDEMRDKGCKPDVVTYNVLINGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSM 327
Query: 217 STARKTNDAVEMMKEMV------------LNMGLMPRQGMVIK----------------- 247
+ + DA + + EM+ + + + R+G++ +
Sbjct: 328 CSTGRWMDAEKFLAEMIRKGCSPSVVTFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNS 387
Query: 248 -----VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ AL +++M +A+E ++ + +GC Y ++ + + +A + +
Sbjct: 388 LSYNPLLHALCKDKKMERAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQ 447
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGE 327
+ +G P + V++GL+ VG+
Sbjct: 448 LGSKGCSPVLITYNTVIDGLSKVGK 472
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/229 (25%), Positives = 93/229 (40%), Gaps = 8/229 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L A+ L GC P ++ + L C + D L EM G P
Sbjct: 298 LDEAIRFLNHMPSYGCQP----NVITHNIILRSMCSTGRWMDAEKFLAEMIRKGCSPSVV 353
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ LC + A VL+ M C P+ SY+ ++ A+ +K A+E + M
Sbjct: 354 TFNILINFLCRKGLIGRAIDVLEKMPQHGCTPNSLSYNPLLHALCKDKKMERAIEYLDIM 413
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V + G P + AL + ++ AVE++ L KGC Y V++G + +
Sbjct: 414 V-SRGCYPDIVTYNTLLTALCKDGKVDVAVEILNQLGSKGCSPVLITYNTVIDGLSKVGK 472
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
A K + M +G P I +V GL+ G+ A E+
Sbjct: 473 TDDAIKLLDEMKGKGLKPDIITYSTLVGGLSREGKVDEAIAFFHDLEEM 521
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 77/184 (41%), Gaps = 5/184 (2%)
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
SG VP +L S + C++ + L + + PD T N ++ +LC +L
Sbjct: 174 SGAVPDVITYNVLISGY----CKTGEIGSALQLLDRMSVSPDVVTYNTILRTLCDSGKLK 229
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +VL EC PD+ +Y+I+I A A++++ EM + G P +
Sbjct: 230 EAMEVLDRQMQRECYPDVITYTILIEATCKESGVGQAMKLLDEM-RDKGCKPDVVTYNVL 288
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + +A+ + + GC + +++ ++ A K + M +G
Sbjct: 289 INGICKEGRLDEAIRFLNHMPSYGCQPNVITHNIILRSMCSTGRWMDAEKFLAEMIRKGC 348
Query: 309 IPYI 312
P +
Sbjct: 349 SPSV 352
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 14/174 (8%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L +M G PD C L+ LC + +A +V++ + + VPD+ +Y+++I
Sbjct: 132 FLEDMVCRGDIPDIIACTSLIRGLCKTGKTWKATRVMEILEDSGAVPDVITYNVLISGYC 191
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCP 274
+ A++++ M ++ P V+ LR + K E +E L+R + C
Sbjct: 192 KTGEIGSALQLLDRMSVS----PD---VVTYNTILRTLCDSGKLKEAMEVLDRQMQRECY 244
Query: 275 IGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++E C+E + A K + M ++G P + ++ G+ G
Sbjct: 245 PDVITYTILIEA--TCKESGVGQAMKLLDEMRDKGCKPDVVTYNVLINGICKEG 296
>gi|125548475|gb|EAY94297.1| hypothetical protein OsI_16066 [Oryza sativa Indica Group]
Length = 602
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/256 (25%), Positives = 121/256 (47%), Gaps = 19/256 (7%)
Query: 83 DEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLS 142
DE++ LR P A ++ Y+L L A+ +L++ + GC ++
Sbjct: 292 DELVTEM--LRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMSKHGCT----ANIVTY 345
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A + C+ ++V +L +MKS G PD T N L+ LC+ Q V+A +++ M+
Sbjct: 346 NAIINGLCEQRNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQ 405
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C+PD +++ +IG + DA+E+ K+M + G P + + L ++
Sbjct: 406 NGCLPDNVTFNTLIGFLCQKGLMVDAIEVFKQMP-DKGCTPNSITYSTIISGLAKATKLD 464
Query: 260 KAVEMIEFLERKGCPIGFQG---YEVVVEGCLECREYI-LAGKTVMGMTERGFIPYIKVR 315
+A+E+ + K GF Y+++ E CL + I A +TV + + G P+ +
Sbjct: 465 QALELFNEMGHK----GFNPDKIYQLLAE-CLNDDDTIEEAIQTVRKLQDSGISPHTVLY 519
Query: 316 QKVVEGLAGVGEWKLA 331
++ GL G+ + A
Sbjct: 520 NAILLGLCRNGKTEFA 535
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
P ++ A + C++ + D + + P+ T N L+ +LC Q+ +A VL
Sbjct: 131 PAATVVAYGALTDGYCRAGRLGDARRVVGGMPVQPNAYTYNPLIHTLCERGQVRDALSVL 190
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C PD+ +Y+I++ A R A+E++ +++ G P + +
Sbjct: 191 DDMLCRGCAPDVVTYNILLEATCKGRGYRQAMELI-DLMRAEGCTPNNVTYNVLMDGMCG 249
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ A+E++ L GC Y V++G
Sbjct: 250 EGDVDDALELLRNLPSHGCKPSTVNYNTVLKG 281
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 44/235 (18%), Positives = 99/235 (42%), Gaps = 14/235 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+ V+D+ML R + + Y+ LL T + A+ ++ GC P
Sbjct: 187 LSVLDDML-----CRGCAPDVVTYNILLEATCKG-RGYRQAMELIDLMRAEGCTP----N 236
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+ + ++ C V D +L + S G P N ++ LC+ ++ +A +++
Sbjct: 237 NVTYNVLMDGMCGEGDVDDALELLRNLPSHGCKPSTVNYNTVLKGLCSAERWGDADELVT 296
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C P+ ++++VI ++ A++++++M G + L
Sbjct: 297 EMLRENCPPNEATFNVVIYSLCRKGLLQQAIQLLEKMS-KHGCTANIVTYNAIINGLCEQ 355
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
R + A+ ++ ++ GC Y +++G +++ A + + MT+ G +P
Sbjct: 356 RNVDGAMGLLSKMKSYGCKPDIVTYNTLLKGLCSAAQWVDAEELMDNMTQNGCLP 410
>gi|125544564|gb|EAY90703.1| hypothetical protein OsI_12306 [Oryza sativa Indica Group]
Length = 644
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L GC P+P + ++ LE C+S + +L M + G D G CN
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVI----LEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ ++ C D+ SY+ V+ + A++ D E+M EMV
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMV-R 244
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + L N + E++ + GC + Y +++G + +
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P + V++GL WK A
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M S G PD T +++ C + EA +LK MSS C P+ SY+IV+
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA E+M +M+ G P + L + +A+E+++ + GC
Sbjct: 435 GLCSAGRWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 275 IGFQGYEVVVEG 286
Y V++G
Sbjct: 494 PDLISYSTVIDG 505
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++ +R C P + L+ +L R + V ++L +M G PD ++
Sbjct: 238 LMDEMVRVDCAPNIVTFNTLI--GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ V+ + +A + +A E++ EM P
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD--CP 353
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVING--FCKEGLIDEAV 411
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ M+ G P V++GL G W
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW 442
>gi|108709396|gb|ABF97191.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|215687193|dbj|BAG91758.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222625245|gb|EEE59377.1| hypothetical protein OsJ_11489 [Oryza sativa Japonica Group]
Length = 644
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L GC P+P + ++ LE C+S + +L M + G D G CN
Sbjct: 130 ALEVLDEMSFKGCAPIPPMYHVI----LEAACRSGGFRNSVRVLEAMHAKGCTLDTGNCN 185
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + EA +L+ ++ C D+ SY+ V+ + A++ D E+M EMV
Sbjct: 186 LVLNAICEQGCVDEAVGLLRKLAFFGCEADIVSYNAVLKGLCMAKRWGDVEELMDEMV-R 244
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + L N + E++ + GC + Y +++G + +
Sbjct: 245 VDCAPNIVTFNTLIGYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDGICKEGHLEV 304
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P + V++GL WK A
Sbjct: 305 ANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEA 340
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M S G PD T +++ C + EA +LK MSS C P+ SY+IV+
Sbjct: 375 VIELLEQMLSHGCMPDVITYTTVINGFCKEGLIDEAVMLLKSMSSCGCKPNTVSYTIVLK 434
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA E+M +M+ G P + L + +A+E+++ + GC
Sbjct: 435 GLCSAGRWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCS 493
Query: 275 IGFQGYEVVVEG 286
Y V++G
Sbjct: 494 PDLISYSTVIDG 505
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 10/211 (4%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++ +R C P + L+ +L R + V ++L +M G PD ++
Sbjct: 238 LMDEMVRVDCAPNIVTFNTLI--GYLCRNGLFERVHEVLAQMSEHGCTPDIRMYATIIDG 295
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+C L A ++L M S P++ Y+ V+ + +A + +A E++ EM P
Sbjct: 296 ICKEGHLEVANEILNRMPSYGLKPNVVCYNTVLKGLCSAERWKEAEELLSEMFQKD--CP 353
Query: 241 RQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ + N + + +E++E + GC Y V+ G C+E ++
Sbjct: 354 LDDVTFNILVDFFCQNGLVDRVIELLEQMLSHGCMPDVITYTTVING--FCKEGLIDEAV 411
Query: 300 VM--GMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ M+ G P V++GL G W
Sbjct: 412 MLLKSMSSCGCKPNTVSYTIVLKGLCSAGRW 442
>gi|449439615|ref|XP_004137581.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Cucumis sativus]
Length = 857
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A IL + GC+P L + ++R +++ +IL M S G PD T N
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI-EILDTMLSHGITPDVITYN 500
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC +L K M C P++ +Y+I+I + RK ++A+E+ KEM
Sbjct: 501 TLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK-T 559
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
GL P + + L +N E+ KA E+ +E++
Sbjct: 560 RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 23/279 (8%)
Query: 64 PNPFSF---LSNF-----PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
PN F++ ++ F QN + D M + FIP + Y L++ L +
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIP------DEFTYSSLIN-GLCNDGD 371
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCG 172
+ A+A+ + G + ++L + ++ + V L MK + H PD
Sbjct: 372 MNRAMAVFYEAMEKGF----KHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N +V+ LC + L +A +L + C+PD+ +++ +I R + A+E++ M
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L+ G+ P + L R++ V+ + + KGC Y +++E + R+
Sbjct: 488 -LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M RG P I ++ GL GE A
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKA 585
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLV 178
+ + ++ G P L + +++ C+ ++ A +L + S G PD + N L+
Sbjct: 238 LFSKVMKRGVCP----NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C +LVEA L M ++ P+ +Y+ +I A +A +++++ + G
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-GF 352
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + + L + +M +A+ + KG Y +V+G + + A +
Sbjct: 353 IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ 412
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ M E G P I VV GL +G
Sbjct: 413 LMKDMMEHGCSPDIWTYNLVVNGLCKMG 440
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 8/219 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L GC + S + + CQ ++ + EM G PD T N L+
Sbjct: 165 ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYH-LFDEMLKQGICPDILTFNKLI 223
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + E+ K+ + P+L +++I I + ++A ++ E +++ GL
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL-ESIVSEGL 282
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYIL 295
P VI + + K VE +L + G Y ++ G +
Sbjct: 283 TPD---VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A K + +GFIP ++ GL G+ A V
Sbjct: 340 ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378
>gi|356557791|ref|XP_003547194.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 793
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 80/180 (44%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ G PD T N L+ C ++++ +A +++ G+ S C PD SY V+G +
Sbjct: 292 FLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPDKVSYYTVMGFLC 351
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K + +M++MV N L+P Q + L + A+ ++ + KG I
Sbjct: 352 KEKKIEEVKCLMEKMVWNSNLIPDQVTYNTLIHMLSKHGHADDALAFLKEAQDKGFHIDK 411
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
GY +V + A V+ M RG P + +V+G +G A + Q+
Sbjct: 412 VGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQ 471
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 89/226 (39%), Gaps = 44/226 (19%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSV 155
++ Y+ L+ + H ALA L+ G I + SA + CQ
Sbjct: 376 QVTYNTLIHMLSKHGHADD-ALAFLKEAQDKGF----HIDKVGYSAIVHSFCQKGRMDEA 430
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
++++M S G +PD T +V C + ++ EA K+L+ M C P+ SY+ ++
Sbjct: 431 KSLVIDMYSRGCNPDVVTYTAIVDGFCRLGRIDEAKKILQQMYKHGCKPNTVSYTALLNG 490
Query: 216 MSTARKTNDAVEMM-----------------------------------KEMVLNMGLMP 240
+ + K+ +A EM+ +EMV G P
Sbjct: 491 LCHSGKSLEAREMINVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMV-EKGFFP 549
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ + +L N+++ +A + +E KGC I + V+ G
Sbjct: 550 TPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINVVNFTTVIHG 595
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 1/165 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + L E + G+H D + +V S C ++ EA ++ M S C PD
Sbjct: 386 LSKHGHADDALAFLKEAQDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRGCNPD 445
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ ++ + ++A +++++M G P + L + + +A EMI
Sbjct: 446 VVTYTAIVDGFCRLGRIDEAKKILQQM-YKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 504
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E Y V+ G + A M E+GF P
Sbjct: 505 NVSEEHWWTPNAITYGAVMHGLRREGKLSEACDLTREMVEKGFFP 549
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 95/225 (42%), Gaps = 10/225 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCN 175
A L+ L GC I ++ + + CQ ++ +L +M G HPD T
Sbjct: 570 AKKYLEECLNKGCA----INVVNFTTVIHGFCQIGDMEAALSVLDDMYLSGKHPDAVTYT 625
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L +L +L EAA+++ M S P +Y VI S + +D + ++++M
Sbjct: 626 ALFDALGKKGRLDEAAELIVKMLSKGLDPTPVTYRSVIHRYSQWGRVDDMLNLLEKM--- 682
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + + +V L + +A +++ + R + V++E L+ I
Sbjct: 683 LKRQPFRTVYNQVIEKLCDFGNLEEAEKLLGKVLRTASKVDANTCHVLMESYLKKGVAIS 742
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A K M R P +K+ +KV + L G+ A + RF E
Sbjct: 743 AYKVACRMFRRNLTPDLKLCEKVSKKLVLDGKLVEADNLMLRFVE 787
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 55/127 (43%), Gaps = 1/127 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + D+ EM G+ P N L+ SLC ++VEA K L+ + C +
Sbjct: 526 LRREGKLSEACDLTREMVEKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAIN 585
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +++ VI A+ ++ +M L+ G P + AL + +A E+I
Sbjct: 586 VVNFTTVIHGFCQIGDMEAALSVLDDMYLS-GKHPDAVTYTALFDALGKKGRLDEAAELI 644
Query: 266 EFLERKG 272
+ KG
Sbjct: 645 VKMLSKG 651
>gi|168018631|ref|XP_001761849.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686904|gb|EDQ73290.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 892
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 72/130 (55%), Gaps = 1/130 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EMK +G P+ N L+ + +L A +VL+ M SA PD +YS++I A
Sbjct: 493 NLLAEMKQVGIQPNAHCYNPLIMGFGSQARLDRALEVLREMLSAGVQPDSYTYSMLIFAC 552
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S R + AVE+ +EM L G+ P G+ +A+ ++ +++EM++ +ER+G +G
Sbjct: 553 SMVRNEDKAVELFEEM-LQRGVQPNAGIYSAMASVFARCGKLERSIEMVKEIERRGEVVG 611
Query: 277 FQGYEVVVEG 286
+ ++ G
Sbjct: 612 TKAKSAILAG 621
>gi|449524916|ref|XP_004169467.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At1g74580-like [Cucumis
sativus]
Length = 877
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 76/156 (48%), Gaps = 2/156 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A IL + GC+P L + ++R +++ +IL M S G PD T N
Sbjct: 442 LSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAI-EILDTMLSHGITPDVITYN 500
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC +L K M C P++ +Y+I+I + RK ++A+E+ KEM
Sbjct: 501 TLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRKVSEAMELFKEMK-T 559
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
GL P + + L +N E+ KA E+ +E++
Sbjct: 560 RGLTPDIVTLCTLICGLCSNGELDKAYELFVTIEKE 595
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 118/279 (42%), Gaps = 23/279 (8%)
Query: 64 PNPFSF---LSNF-----PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
PN F++ ++ F QN + D M + FIP + Y L++ L +
Sbjct: 319 PNEFTYNTIINGFCKAGMMQNADKILRDAMFKGFIP------DEFTYSSLIN-GLCNDGD 371
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCG 172
+ A+A+ + G + ++L + ++ + V L MK + H PD
Sbjct: 372 MNRAMAVFYEAMEKG----FKHSIILYNTLVKGLSKQGLVLQALQLMKDMMEHGCSPDIW 427
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N +V+ LC + L +A +L + C+PD+ +++ +I R + A+E++ M
Sbjct: 428 TYNLVVNGLCKMGCLSDANGILNDAIAKGCIPDIFTFNTLIDGYCKQRNMDKAIEILDTM 487
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L+ G+ P + L R++ V+ + + KGC Y +++E + R+
Sbjct: 488 -LSHGITPDVITYNTLLNGLCKARKLDNVVDTFKAMLEKGCTPNIITYNILIESFCKDRK 546
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M RG P I ++ GL GE A
Sbjct: 547 VSEAMELFKEMKTRGLTPDIVTLCTLICGLCSNGELDKA 585
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLV 178
+ + ++ G P L + +++ C+ ++ A +L + S G PD + N L+
Sbjct: 238 LFSKVMKRGVCP----NLFTFNIFIQGLCRKGAIDEAARLLESIVSEGLTPDVISYNTLI 293
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C +LVEA L M ++ P+ +Y+ +I A +A +++++ + G
Sbjct: 294 CGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQNADKILRDAMFK-GF 352
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + + L + +M +A+ + KG Y +V+G + + A +
Sbjct: 353 IPDEFTYSSLINGLCNDGDMNRAMAVFYEAMEKGFKHSIILYNTLVKGLSKQGLVLQALQ 412
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ M E G P I VV GL +G
Sbjct: 413 LMKDMMEHGCSPDIWTYNLVVNGLCKMG 440
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 85/219 (38%), Gaps = 8/219 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L GC + S + + CQ ++ + EM G PD T N L+
Sbjct: 165 ALRLLNNMPGQGCEFNAVSYCAVISGFYKENCQIEAYH-LFDEMLKQGICPDILTFNKLI 223
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + E+ K+ + P+L +++I I + ++A ++ E +++ GL
Sbjct: 224 HVLCKKGNVQESEKLFSKVMKRGVCPNLFTFNIFIQGLCRKGAIDEAARLL-ESIVSEGL 282
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYIL 295
P VI + + K VE +L + G Y ++ G +
Sbjct: 283 TPD---VISYNTLICGFCKHSKLVEAECYLHKMVNSGVEPNEFTYNTIINGFCKAGMMQN 339
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A K + +GFIP ++ GL G+ A V
Sbjct: 340 ADKILRDAMFKGFIPDEFTYSSLINGLCNDGDMNRAMAV 378
>gi|224092336|ref|XP_002309564.1| predicted protein [Populus trichocarpa]
gi|222855540|gb|EEE93087.1| predicted protein [Populus trichocarpa]
Length = 593
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L++ +GC P V ++ S +RR DI MK G PD T N L
Sbjct: 222 AAGLLKKMEEAGCQPNVVTYSTIIDSHRKDRRVNE--ALDIFSYMKVKGISPDIFTYNSL 279
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ LC Q EA+ +L M S +PD+ ++++++ + K ++A ++K M MG
Sbjct: 280 IQGLCNFSQWKEASALLNEMRSLNIMPDIVTFNVLVDTICKEGKVSEAQGVLKTMT-EMG 338
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + E+ +A ++ + + KGC Y +++ G + + A
Sbjct: 339 VEPDVVTYSSLMYGYSLRSEVVEARKLFDAMITKGCKPDVFSYNILINGYCKVKRIDEAK 398
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M +G P ++ GL +G + A
Sbjct: 399 QLFNEMIHQGLTPNNVSYNTLIHGLCQLGSLREA 432
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ M + G P+ T + L+ C +A ++ + M S P+L Y+I+I AM
Sbjct: 434 NLFKNMHTNGNLPNLFTYSILLDGFCKQGYFGKAFRLFRAMQSTYSKPNLVMYNILIDAM 493
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ DA ++ E+ + GL P + + L + +A+E +E GCP
Sbjct: 494 CKSGNLRDARKLFSELFVK-GLQPNAQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 552
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L ++ A + + M ++GFI
Sbjct: 553 EISYNVIIRGFLHHKDESRAVQLIGEMRDKGFI 585
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 64/135 (47%), Gaps = 1/135 (0%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P I +L L + LA ++L + ++ G P L + WL + + +
Sbjct: 131 PNIYTLSILINCFSHLQRVDLAFSVLAKIIKLGLQPTIVTFTTLIN-WLCKVGKFAQAME 189
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M + G PD T +++ LC I + AA +LK M A C P++ +YS +I +
Sbjct: 190 LFDDMVARGCRPDVYTYTTIINGLCKIGETAAAAGLLKKMEEAGCQPNVVTYSTIIDSHR 249
Query: 218 TARKTNDAVEMMKEM 232
R+ N+A+++ M
Sbjct: 250 KDRRVNEALDIFSYM 264
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 33/177 (18%), Positives = 65/177 (36%), Gaps = 36/177 (20%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G P T L++ LC + + +A ++ M + C PD+ +Y+ +I +
Sbjct: 155 VLAKIIKLGLQPTIVTFTTLINWLCKVGKFAQAMELFDDMVARGCRPDVYTYTTIINGLC 214
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+T A ++K+M E GC
Sbjct: 215 KIGETAAAAGLLKKM------------------------------------EEAGCQPNV 238
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y +++ + R A M +G P I +++GL +WK A+ +
Sbjct: 239 VTYSTIIDSHRKDRRVNEALDIFSYMKVKGISPDIFTYNSLIQGLCNFSQWKEASAL 295
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 47/98 (47%), Gaps = 3/98 (3%)
Query: 138 RLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
L++ + ++ C+S ++ D + E+ G P+ +++ LC L EA +
Sbjct: 482 NLVMYNILIDAMCKSGNLRDARKLFSELFVKGLQPNAQIYTTIINGLCKEGLLDEALEAF 541
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ M C PD SY+++I + + AV+++ EM
Sbjct: 542 RNMEEDGCPPDEISYNVIIRGFLHHKDESRAVQLIGEM 579
>gi|449441228|ref|XP_004138384.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
gi|449499186|ref|XP_004160743.1| PREDICTED: pentatricopeptide repeat-containing protein At4g01400,
mitochondrial-like [Cucumis sativus]
Length = 482
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 112/252 (44%), Gaps = 5/252 (1%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
+ID++L SF R P A+ Y++ ++ P AL + + GC P +
Sbjct: 124 LIDDLLLSFKSRRYPVTP-TAFSYIIKIYGEADLP-DKALKVFYTMIDFGCTPSSKQLNR 181
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
+ + R + D+ + G P+ + N L+ + C + A + M
Sbjct: 182 ILEILVSHRNFIRPAFDLFKNARHHGVLPNTKSYNILIRAFCWNGNISIAYTLFNKMFER 241
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+PD+E+Y ++ + + N AV+++++M LN G +P + +L +++ +
Sbjct: 242 NVIPDVETYRTLMQGLCRKNQVNGAVDLLEDM-LNKGYIPDTLSYATLLNSLCRKKKLRE 300
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A +++ ++ KGC Y V+ G C E R + A K + M G +P + + +
Sbjct: 301 AYKLLCRMKVKGCNPDIAHYNTVIMGFCREGRA-LDACKILEDMQSNGCLPNLVSYESLT 359
Query: 320 EGLAGVGEWKLA 331
GL G ++LA
Sbjct: 360 NGLCDQGMFELA 371
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/212 (25%), Positives = 86/212 (40%), Gaps = 39/212 (18%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
+ +A + + +P V R L+ L R+ Q D+L +M + GY PD +
Sbjct: 228 ISIAYTLFNKMFERNVIPDVETYRTLMQG--LCRKNQVNGAVDLLEDMLNKGYIPDTLSY 285
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC +L EA K+L M C PD+ Y+ VI
Sbjct: 286 ATLLNSLCRKKKLREAYKLLCRMKVKGCNPDIAHYNTVI--------------------- 324
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
MG R+G + A +++E ++ GC YE + G + +
Sbjct: 325 -MGFC-REGRAL-------------DACKILEDMQSNGCLPNLVSYESLTNGLCDQGMFE 369
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
LA V MT +GF P+ V +V+G +G
Sbjct: 370 LAKGYVEEMTLKGFYPHFSVIHALVKGFHSIG 401
>gi|242065464|ref|XP_002454021.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
gi|241933852|gb|EES06997.1| hypothetical protein SORBIDRAFT_04g023230 [Sorghum bicolor]
Length = 729
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 100/219 (45%), Gaps = 8/219 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILL-EMKSIGYHPDCG 172
+P ALA+ L GC P ++ S L+ C++ A +LL EM++ G PD
Sbjct: 178 VPDALAVFDDMLHRGCSP----SVVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIV 233
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++++C + EA +L + S C PD +Y+ V+ ++ + + + E+ EM
Sbjct: 234 TYNVLINAMCNEGDVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKEVEELFAEM 293
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
N P + + +L + +A+++++ + GC Y +++G +
Sbjct: 294 ASNK-CAPDEVTFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGR 352
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + + G P V++GL + +W+ A
Sbjct: 353 VDDAVELLSRLKSYGCKPDTIAYTTVLKGLCSIEQWEHA 391
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 89/210 (42%), Gaps = 14/210 (6%)
Query: 119 ALAILQRTLRSGCVP-----VPQIRLLLSSA-WLERRCQSQSVADILLEMKSIGYHPDCG 172
AL IL GC P P ++ L S W E V ++ EM S PD
Sbjct: 251 ALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWKE-------VEELFAEMASNKCAPDEV 303
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N +V+SLC + A KV+ MS C+PD+ +YS ++ + + +DAVE++ +
Sbjct: 304 TFNTIVTSLCQQGLVDRAIKVVDHMSEHGCIPDIVTYSSILDGLCDVGRVDDAVELLSRL 363
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G P V L + + A E++ + CP + V+ +
Sbjct: 364 K-SYGCKPDTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGL 422
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A K V M+E G P I +++GL
Sbjct: 423 VDRAIKVVEQMSENGCNPDIVTYNSIIDGL 452
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/142 (26%), Positives = 74/142 (52%), Gaps = 9/142 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ ++++ +GC P ++ ++ ++ C + + D +L ++S G PD T N
Sbjct: 426 AIKVVEQMSENGCNP----DIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFN 481
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC++D+ +A +++ M ++C PD +++ VI ++ A+E +K M N
Sbjct: 482 TLLKGLCSVDRWEDAEQLMVNMMHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAEN 541
Query: 236 MGLMPRQGMV-IKVAAALRANR 256
G +P Q I V A L+A +
Sbjct: 542 -GCIPNQSTYNIVVDALLKAGK 562
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/264 (24%), Positives = 113/264 (42%), Gaps = 24/264 (9%)
Query: 76 NHRIKVIDEMLE-SFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
+ IKV+D M E IP + Y +L L + + A+ +L R GC P
Sbjct: 319 DRAIKVVDHMSEHGCIP------DIVTYSSILD-GLCDVGRVDDAVELLSRLKSYGCKP- 370
Query: 135 PQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
+ + L+ C Q + +++ EM PD T N +++SLC + A
Sbjct: 371 ---DTIAYTTVLKGLCSIEQWEHAEELMAEMVCSDCPPDEVTFNTVIASLCQKGLVDRAI 427
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
KV++ MS C PD+ +Y+ +I + R +DA+E++ + + G P ++
Sbjct: 428 KVVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNL-QSYGCKPD---IVTFNTL 483
Query: 252 LRA--NREMWKAVE--MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
L+ + + W+ E M+ + CP + V+ + + A +T+ M E G
Sbjct: 484 LKGLCSVDRWEDAEQLMVNMM-HSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENG 542
Query: 308 FIPYIKVRQKVVEGLAGVGEWKLA 331
IP VV+ L G+ + A
Sbjct: 543 CIPNQSTYNIVVDALLKAGKTQEA 566
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 3/174 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M G +PD T N ++ LC + +A ++L + S C PD+ +++ ++ +
Sbjct: 429 VVEQMSENGCNPDIVTYNSIIDGLCNERCIDDAMELLSNLQSYGCKPDIVTFNTLLKGLC 488
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + DA ++M M ++ P V +L + +A+E ++ + GC
Sbjct: 489 SVDRWEDAEQLMVNM-MHSDCPPDATTFNTVITSLCQKGLLLQAIETLKIMAENGCIPNQ 547
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +VV+ L+ + A K + GMT P + V+ + G+ + A
Sbjct: 548 STYNIVVDALLKAGKTQEALKLLSGMTNG--TPDLITYNTVISNITKAGKMEEA 599
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 52/232 (22%), Positives = 99/232 (42%), Gaps = 20/232 (8%)
Query: 119 ALAILQRTLRSG----CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
ALA++ G C+P+P ++ + ++R C VAD ++G T
Sbjct: 77 ALALVDSIASGGGSGKCLPLP---VVPCNILIKRLCSGGRVADAERVFATLGASATVVTY 133
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N +V+ C ++ +A +++ GM PD +++ +I A+ + DA+ + +M L
Sbjct: 134 NTMVNGYCRAGRIEDARRLISGMPFP---PDTFTFNPLIRALCVRGRVPDALAVFDDM-L 189
Query: 235 NMGLMPRQGMVIKVAAALRANREMW---KAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+ G P V+ + L A + +A+ +++ + KGC Y V++
Sbjct: 190 HRGCSPS---VVTYSILLDATCKASGYRQAMVLLDEMRAKGCEPDIVTYNVLINAMCNEG 246
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ A + + G P V++ L G WK V + FAE+ S
Sbjct: 247 DVDEALNILSDLPSHGCKPDAVTYTPVLKSLCGSERWK---EVEELFAEMAS 295
>gi|413934035|gb|AFW68586.1| hypothetical protein ZEAMMB73_127077 [Zea mays]
Length = 800
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 100/236 (42%), Gaps = 9/236 (3%)
Query: 97 RPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
RP Y+ +L + S +PLALA+ R + +GC+P +L +R ++
Sbjct: 172 RPTTFVYNAVLRVLVASGGAVPLALALYNRMVAAGCLPNRATYNVLIHGLCKRGTPVDAL 231
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ EM S G P+ T L+SS+C QL EA +L M C PD +Y+ +
Sbjct: 232 -KLFDEMISRGITPNVKTHTILLSSMCNAGQLKEAENLLHSMEDKGCPPDEVTYNAFLSG 290
Query: 216 MSTARKTNDAVEMMKEM----VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+ A + ++A+E ++ + +GL +G + A R +E LE+
Sbjct: 291 LCKAGRVDEAIERLEALRHTGTFVLGL---KGYSCLIDGLFLAGRYEEGFQCYMEVLEQA 347
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y +++ GC E A M E+GF P +++ L G+
Sbjct: 348 DVSPDIVLYTIMIRGCAEAGRTNDAFAFFDEMKEKGFTPDTFCYNTLLKALCDAGD 403
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 50/105 (47%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T LV S+C Q+++A K+L+G+ + VPD+ +Y+ ++ + R + A+ +
Sbjct: 505 DSETLQKLVESMCQSGQVLKAYKLLRGIIDSGVVPDVVTYNTLLNGLCKVRNLDGALRLF 564
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+E+ + + + + LRA+R + L G P
Sbjct: 565 RELQVKGFPLDEITYGTLIDSLLRAHRYNDALTLFQDILHSGGTP 609
>gi|357447159|ref|XP_003593855.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355482903|gb|AES64106.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 790
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 74/170 (43%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L MK G PD + N L+ C + ++ +A +++ M C PD SY V+ +
Sbjct: 289 FLERMKVAGIEPDIVSYNCLIKGYCDVHRIDDALELIAEMPFKGCPPDKVSYYTVMAFLC 348
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK + +M+ MV N L+P Q + AL + A+ + E KG I
Sbjct: 349 KDRKVEEVKRLMENMVQNSNLIPDQVTYNTLIYALSKHGHADDALVFLREAEEKGFHIDK 408
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
GY VV+ + + A V+ M +G P + +++G VG+
Sbjct: 409 VGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCRVGK 458
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 1/165 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + L E + G+H D + +V S C + +A ++ M S C PD
Sbjct: 383 LSKHGHADDALVFLREAEEKGFHIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPD 442
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ +I K ++A +M+++M G P + L N + +A EMI
Sbjct: 443 VVTYTAIIDGFCRVGKIDEAKKMLQQM-YKHGCKPNTVTYTVLLNGLCHNGKSLEAREMI 501
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E Y V+ G + A M E+GF+P
Sbjct: 502 NVSEEHWWTPNAITYSAVMHGLRREGKLSEACDLTREMIEKGFLP 546
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 81/167 (48%), Gaps = 8/167 (4%)
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRT 126
++ ++ ++ +++ + ++E+ + ++ Y+ L+ Y L AL L+
Sbjct: 341 YTVMAFLCKDRKVEEVKRLMENMVQNSNLIPDQVTYNTLI-YALSKHGHADDALVFLREA 399
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCA 183
G I + SA ++ C+++++ ++++M S G +PD T ++ C
Sbjct: 400 EEKGF----HIDKVGYSAVVDSFCKNKNIDKAKSLVIDMYSKGCNPDVVTYTAIIDGFCR 455
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ ++ EA K+L+ M C P+ +Y++++ + K+ +A EM+
Sbjct: 456 VGKIDEAKKMLQQMYKHGCKPNTVTYTVLLNGLCHNGKSLEAREMIN 502
>gi|357512639|ref|XP_003626608.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|87240852|gb|ABD32710.1| Tetratricopeptide-like helical [Medicago truncatula]
gi|355501623|gb|AES82826.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 451
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 84/177 (47%), Gaps = 3/177 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + G PD + N L+ + C + A + M + VPD++SY I++ A+
Sbjct: 168 DLFKDAHKHGVFPDTKSYNILMRAFCLNGDISIAYTLFNKMFKRDVVPDIQSYRILMQAL 227
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ N AV++ ++M LN G +P + +L +++ +A +++ ++ KGC
Sbjct: 228 CRKSQVNGAVDLFEDM-LNKGFVPDSFTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPD 286
Query: 277 FQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y V+ G C E R + A K + M G +P + + +V GL +G AT
Sbjct: 287 IVHYNTVILGFCREGRAHD-ACKVIDDMQANGCLPNLVSYRTLVNGLCHLGMLDEAT 342
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 52/211 (24%), Positives = 80/211 (37%), Gaps = 37/211 (17%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+ +A + + + VP Q +L A L R+ Q D+ +M + G+ PD T
Sbjct: 198 ISIAYTLFNKMFKRDVVPDIQSYRILMQA-LCRKSQVNGAVDLFEDMLNKGFVPDSFTYT 256
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++SLC +L EA K+L M C PD+ Y+ VI + +DA +++ +M N
Sbjct: 257 TLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRAHDACKVIDDMQAN 316
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GC Y +V G
Sbjct: 317 ------------------------------------GCLPNLVSYRTLVNGLCHLGMLDE 340
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A K V M +GF P+ V +V+G VG
Sbjct: 341 ATKYVEEMLSKGFSPHFAVIHALVKGFCNVG 371
>gi|356498877|ref|XP_003518274.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 395
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 85/174 (48%), Gaps = 8/174 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L + +L R L+S C P ++ + ++ C+ V +L+EM S G P+
Sbjct: 12 LKQGVVVLDRQLQSKCYP----DVVTCTELIDAACKESGVGQAMKLLIEMMSKGCKPNVV 67
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ +C +L EA + LK + S D+ SY+I++ ++ + K DA++++ M
Sbjct: 68 TYNVLIKGICNEGRLDEAIRFLKNLPSYSIQLDVISYTIILHSLCSGGKWMDAMKLLASM 127
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ N G P + L + KA+ ++E + + GC F+ Y ++EG
Sbjct: 128 LRN-GFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPLIEG 180
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 64/143 (44%), Gaps = 8/143 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G+ P+ T N L++ LC L +A VL+ M C P+ SY+ +I
Sbjct: 123 LLASMLRNGFSPNVVTFNTLINFLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPLIEGFC 182
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + +E + MV + I + AL + ++ A+E++ L GC
Sbjct: 183 NEKSADRTIEYSRIMVSRGCYLDTVTYNI-LLTALCKDGKVDDAIEILNQLSLNGCSPLL 241
Query: 278 QGYEVVVEGCLECREYILAGKTV 300
Y +V++G L+ GKTV
Sbjct: 242 ITY-IVIDGLLK------VGKTV 257
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 84/197 (42%), Gaps = 34/197 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE----MKSIGYHPDCGTC 174
AL +L+ + GC P + +E C +S AD +E M S G + D T
Sbjct: 155 ALNVLEMMPKHGCTP----NFRSYNPLIEGFCNEKS-ADRTIEYSRIMVSRGCYLDTVTY 209
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV--EMMKEM 232
N L+++LC ++ +A ++L +S C P L +Y ++ G + + + V E +K +
Sbjct: 210 NILLTALCKDGKVDDAIEILNQLSLNGCSPLLITYIVIDGLLKVGKTVHVVVLFEEIKAL 269
Query: 233 VLNM-------GLMPRQGMVIKVAAALR----------------ANREMWKAVEMIEFLE 269
N+ G + R+G V + R ++ +A++ + ++
Sbjct: 270 KPNLITFTSVEGGLSRKGKVHEAIQNFRFLEGLGIRXSIIMGLCKTQQTSRAIDFLAYMV 329
Query: 270 RKGCPIGFQGYEVVVEG 286
GC Y ++V+G
Sbjct: 330 ENGCKPTEATYNILVKG 346
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 90/208 (43%), Gaps = 19/208 (9%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L LR+G P V L++ +L + ++L M G P+ + N L
Sbjct: 120 AMKLLASMLRNGFSPNVVTFNTLIN--FLCLKGLLGKALNVLEMMPKHGCTPNFRSYNPL 177
Query: 178 VSSLC---AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+ C + D+ +E +++ M S C D +Y+I++ A+ K +DA+E++ ++ L
Sbjct: 178 IEGFCNEKSADRTIEYSRI---MVSRGCYLDTVTYNILLTALCKDGKVDDAIEILNQLSL 234
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N G P I + L+ + + V E K I F VEG L +
Sbjct: 235 N-GCSPLLITYIVIDGLLKVGKTVHVVVLFEEIKALKPNLITFTS----VEGGLSRK--- 286
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
GK + F+ + +R ++ GL
Sbjct: 287 --GKVHEAIQNFRFLEGLGIRXSIIMGL 312
>gi|125562258|gb|EAZ07706.1| hypothetical protein OsI_29963 [Oryza sativa Indica Group]
Length = 465
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 2/218 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A L G P + R LL L R + + L M G PD T N L
Sbjct: 242 AQAFLDDMAERGFHPPVRGRDLLVDG-LVRAGRLEEAKAFALRMTKEGVLPDVATFNSLA 300
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC+ + A +L SS PD+ +Y ++I A++ A + ++A + L G
Sbjct: 301 EALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYA-ALEDGH 359
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + AL A ++ KG P Y ++V+ C+ ++ A
Sbjct: 360 RPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAAN 419
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
++ M+E GF P VV+GL G+ LA + Q
Sbjct: 420 YLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQ 457
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
S++ + R Q+V ++ + G N L+ +LCA A K+L+ M+
Sbjct: 161 SSYGQSRLTDQAV-EVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGV 219
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR-EMWKA 261
PD ++S ++ A A K +A + +M P +G + V +RA R E KA
Sbjct: 220 APDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKA 279
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ + ++G + + E + A + + RG P I + ++
Sbjct: 280 FALR--MTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPA 337
Query: 322 LAGVG 326
+A G
Sbjct: 338 VAKAG 342
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/306 (18%), Positives = 114/306 (37%), Gaps = 48/306 (15%)
Query: 54 LGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113
L + +A Q +P S + F H + + + D+ L TL L
Sbjct: 33 LATLPDAAQPQHPTSKDAYFAAVHHLSTV-----------------VRRDFYLERTLNRL 75
Query: 114 H---PLPLALAILQRTLRSGCV--PVPQIRLLLSSAWLERRCQSQSVAD----------- 157
P P LA+ R +R+ P+ R L AWL + + AD
Sbjct: 76 RLPSPFPPDLAL--RVIRAAAPAEPLHAARFL---AWLRAKPSFAASADHFDALLLPLAR 130
Query: 158 ---------ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ +M+++G T + ++SS +A +V + C +
Sbjct: 131 ARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQV 190
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ A+ A ++++ M G+ P + + A A ++ +A ++ +
Sbjct: 191 YNALLDALCANGSFAGAYKLLRRMA-RKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDM 249
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+G +G +++V+G + A + MT+ G +P + + E L G+
Sbjct: 250 AERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDV 309
Query: 329 KLATVV 334
+ A +
Sbjct: 310 EFAVAL 315
>gi|125604075|gb|EAZ43400.1| hypothetical protein OsJ_28005 [Oryza sativa Japonica Group]
Length = 461
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 90/218 (41%), Gaps = 2/218 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A L G P + R LL L R + + L M G PD T N L
Sbjct: 238 AQAFLDDMAERGFHPPVRGRDLLVDG-LVRAGRLEEAKAFALRMTKEGVLPDVATFNSLA 296
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC+ + A +L SS PD+ +Y ++I A++ A + ++A + L G
Sbjct: 297 EALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGRIDEAFRLFYA-ALEDGH 355
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + AL A ++ KG P Y ++V+ C+ ++ A
Sbjct: 356 RPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFVEAAN 415
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
++ M+E GF P VV+GL G+ LA + Q
Sbjct: 416 YLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQ 453
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
S++ + R Q+V ++ + G N L+ +LCA A K+L+ M+
Sbjct: 157 SSYGQSRLTDQAV-EVFNRLPRFGCPQTTQVYNALLDALCANGSFAGAYKLLRRMARKGV 215
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR-EMWKA 261
PD ++S ++ A A K +A + +M P +G + V +RA R E KA
Sbjct: 216 APDRATFSTLVDAWCAAGKLREAQAFLDDMAERGFHPPVRGRDLLVDGLVRAGRLEEAKA 275
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ + ++G + + E + A + + RG P I + ++
Sbjct: 276 FALR--MTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPA 333
Query: 322 LAGVG 326
+A G
Sbjct: 334 VAKAG 338
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 56/306 (18%), Positives = 114/306 (37%), Gaps = 48/306 (15%)
Query: 54 LGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113
L + +A Q +P S + F H + + + D+ L TL L
Sbjct: 29 LATLPDAAQPQHPTSKDAYFAAVHHLSTV-----------------VRRDFYLERTLNRL 71
Query: 114 H---PLPLALAILQRTLRSGCV--PVPQIRLLLSSAWLERRCQSQSVAD----------- 157
P P LA+ R +R+ P+ R L AWL + + AD
Sbjct: 72 RLPSPFPPDLAL--RVIRAAAPAEPLHAARFL---AWLRAKPSFAASADHFDALLLPLAR 126
Query: 158 ---------ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ +M+++G T + ++SS +A +V + C +
Sbjct: 127 ARLFTHLWSLAADMRALGLPLSPSTFSAVISSYGQSRLTDQAVEVFNRLPRFGCPQTTQV 186
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ A+ A ++++ M G+ P + + A A ++ +A ++ +
Sbjct: 187 YNALLDALCANGSFAGAYKLLRRMA-RKGVAPDRATFSTLVDAWCAAGKLREAQAFLDDM 245
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+G +G +++V+G + A + MT+ G +P + + E L G+
Sbjct: 246 AERGFHPPVRGRDLLVDGLVRAGRLEEAKAFALRMTKEGVLPDVATFNSLAEALCSSGDV 305
Query: 329 KLATVV 334
+ A +
Sbjct: 306 EFAVAL 311
>gi|302818229|ref|XP_002990788.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
gi|300141349|gb|EFJ08061.1| hypothetical protein SELMODRAFT_132337 [Selaginella moellendorffii]
Length = 624
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/155 (30%), Positives = 70/155 (45%), Gaps = 1/155 (0%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T L+ LC +QL +A ++L M CVPD Y+ +I S A+ A +
Sbjct: 7 QPDAFTFAILLRGLCRSNQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK 66
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ EMV N L P + L AV++++ + KGC Y V+VEG
Sbjct: 67 FLAEMVKNHCL-PTVVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGL 125
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E R+ A K + M RG+ P + ++GL
Sbjct: 126 CEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGL 160
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 94/218 (43%), Gaps = 5/218 (2%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
+ L A +L R GCVP I L S + + + Q+ L EM P T
Sbjct: 24 NQLEKARQLLGRMKEMGCVPDDAIYNALISGYSKAKDFGQAFK-FLAEMVKNHCLPTVVT 82
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+V LC + +A K+L M C P++ +Y++++ + RK ++A +M++EM
Sbjct: 83 YTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYNVIVEGLCEERKLDEAKKMLEEMA 142
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
+ G P V+ + ++ + + E +FL R Y V+ G + +
Sbjct: 143 VR-GYFPD---VVTYNSFIKGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDL 198
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + MT RG P + +++G GE + A
Sbjct: 199 DSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVERA 236
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 90/251 (35%), Gaps = 35/251 (13%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L GC P ++ E R + +L EM GY PD T N +
Sbjct: 99 AVKLLDEMRDKGCSPNIYTYNVIVEGLCEER-KLDEAKKMLEEMAVRGYFPDVVTYNSFI 157
Query: 179 SSLCAIDQLVEAAK--------------------------------VLKGMSSAECVPDL 206
LC D++ EA K +L M++ C PD+
Sbjct: 158 KGLCKCDRVDEARKFLARMPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDV 217
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +I + A+ ++ M L +G P + AL + KA +M+
Sbjct: 218 VTYSSLIDGFCKGGEVERAMGLLDSM-LKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLV 276
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ER+G Y ++G + A M ERG P +VE L
Sbjct: 277 EMERRGFTPDVVSYNACIDGLCKAERVKKAKAVFDRMVERGCTPNASSYSMLVEELCKKK 336
Query: 327 EWKLA-TVVRQ 336
E A T+V Q
Sbjct: 337 ELDDAITLVEQ 347
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/260 (21%), Positives = 103/260 (39%), Gaps = 46/260 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A L +++ C+P ++ + ++ C++ D +L EM+ G P+ T N
Sbjct: 64 AFKFLAEMVKNHCLPT----VVTYTNIVDGLCKAGRTKDAVKLLDEMRDKGCSPNIYTYN 119
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V LC +L EA K+L+ M+ PD+ +Y+ I + + ++A ++ +
Sbjct: 120 VIVEGLCEERKLDEAKKMLEEMAVRGYFPDVVTYNSFIKGLCKCDRVDEA----RKFLAR 175
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-C------- 287
M + P V L + ++ A M++ + +GC Y +++G C
Sbjct: 176 MPVTPDVVSYTTVINGLCKSGDLDSASRMLDQMTNRGCTPDVVTYSSLIDGFCKGGEVER 235
Query: 288 ----------LECREYILAGKTVMG-----------------MTERGFIPYIKVRQKVVE 320
L CR ++A +++G M RGF P + ++
Sbjct: 236 AMGLLDSMLKLGCRPNMVAYNSLLGALHRLGHIGKAEDMLVEMERRGFTPDVVSYNACID 295
Query: 321 GLAGVGEWKLATVVRQRFAE 340
GL K A V R E
Sbjct: 296 GLCKAERVKKAKAVFDRMVE 315
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 43/197 (21%), Positives = 78/197 (39%), Gaps = 37/197 (18%)
Query: 32 RTLEETVRAAVDAKDYQQIPELL------------GSFEEACQNPNPFSFLSNFPQNHRI 79
+ L++ + A++ QI ++L G F+EAC FS
Sbjct: 336 KELDDAITLVEQAREKYQIVDILLYTVLLDGLCKGGRFDEACA---LFS----------- 381
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
KV+DE + P + + ++ + + AL I ++ L C V +
Sbjct: 382 KVLDEKI---------CEPDVFFYNVMLDSHCKRRQIDKALQIHKQMLERNCCNVVTWNI 432
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ ++ R +LL M G+ PD T LV ++C + A ++ +
Sbjct: 433 LVHGLCVDDRLSDAET--MLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEAVK 490
Query: 200 AECVPDLESYSIVIGAM 216
CVPD+ +YS +I +
Sbjct: 491 GGCVPDVVTYSALITGL 507
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 32/61 (52%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N LV LC D+L +A +L M +PD +Y ++ AM K+ A+E+ +E
Sbjct: 429 TWNILVHGLCVDDRLSDAETMLLTMVDEGFIPDFVTYGTLVDAMCKCGKSAAALELFEEA 488
Query: 233 V 233
V
Sbjct: 489 V 489
>gi|224059754|ref|XP_002299984.1| predicted protein [Populus trichocarpa]
gi|222847242|gb|EEE84789.1| predicted protein [Populus trichocarpa]
Length = 610
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL+EM +IG PD T N L+ C D EA ++ M VPDL S+S +I S
Sbjct: 210 ILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLIAVFS 269
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
R + A+ ++M GL+P + + N M +A+++ + + +GC +
Sbjct: 270 RNRHLDQALVYFRDMK-KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDV 328
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
Y ++ G C+E +L A K M ERG +P ++ G
Sbjct: 329 IAYNTILNGL--CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHG 372
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 74/334 (22%), Positives = 130/334 (38%), Gaps = 33/334 (9%)
Query: 17 PCLLQFSSLRSM-SSLRTLEETVRAAVDAKDYQQIPE------LLGSFEEACQNPNPFSF 69
P L+ FSSL ++ S R L++ + D K + +P+ L+ + C+N N
Sbjct: 256 PDLVSFSSLIAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY---CRNGNMLEA 312
Query: 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRS 129
L K+ DEMLE L IAY+ +L+ L L A + +
Sbjct: 313 L---------KIRDEMLEQGCVL-----DVIAYNTILN-GLCKEKMLTDADKLFDEMVER 357
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQ 186
G +P + + CQ ++ L M PD N L+ C + +
Sbjct: 358 GALP----DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 413
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
+ +A+++ GM S + P+ +Y I+I A + ++A + M+ G+ P
Sbjct: 414 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI-EKGIKPTLVTCN 472
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
V + + KA E + + KG Y ++ G + A + M +
Sbjct: 473 TVIKGYCRSGDSSKADEFLGRMIAKGVAPDHISYNTLINGFVREDNMDKAFLWINKMEKE 532
Query: 307 GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
G +P I V+ G G + A +V ++ E
Sbjct: 533 GLLPDIITYNVVMNGFCRQGRMQEAELVLRKMIE 566
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 64/132 (48%), Gaps = 4/132 (3%)
Query: 110 LQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L + + LA + + +RSG + V + +++++ L + + V L EM+ G +
Sbjct: 93 LVKIDWVELAWEVHREVVRSGIELNVYTLNIMVNA--LCKDGKFDDVKSFLSEMEGNGIY 150
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
D T N L+ + C L EA +++ M+ P L +Y+ +I + + A +
Sbjct: 151 ADMVTYNTLIGAYCREGLLEEAFEIMNSMADKGLKPSLFTYNAIINGLCKKGRYARAKGI 210
Query: 229 MKEMVLNMGLMP 240
+ EM LN+GL P
Sbjct: 211 LIEM-LNIGLSP 221
>gi|224098475|ref|XP_002334555.1| predicted protein [Populus trichocarpa]
gi|222873072|gb|EEF10203.1| predicted protein [Populus trichocarpa]
Length = 244
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/153 (28%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ M G PD + L+ LC L +A ++ + M S+ PDL Y+I++ AM
Sbjct: 85 DLFKNMHKNGNLPDLFAYSILLDGLCKQGYLGKAFRLFRAMQSSSLKPDLVMYNILVDAM 144
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ DA E+ E+ + GL P + + L + +A+E +E GCP
Sbjct: 145 CKSGNLKDARELFSELFVK-GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPD 203
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L+ ++ A + M +RGFI
Sbjct: 204 EFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFI 236
>gi|168049795|ref|XP_001777347.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162671323|gb|EDQ57877.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 621
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + ++ +++ EM++ G P+ T N LV L Q EA ++L M CVPD
Sbjct: 54 LGRAGKWEAALEVVAEMQAKGCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPD 113
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ +I + A + ++A + EM G +P + L KA+E++
Sbjct: 114 VRTYNCLISTLGKAGRLSEAFTLFAEM-RERGCVPDTFTYNSLIYGLGKVGRSQKAMELL 172
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E +ER GCP Y ++ G + E + A K M RG P
Sbjct: 173 EEMERHGCPPDVMTYSSLITGLGKDGETVKAFKLFQEMKRRGRKP 217
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 70/317 (22%), Positives = 126/317 (39%), Gaps = 25/317 (7%)
Query: 17 PCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN 76
P ++ +SSL ++ L ETV+A +L + + P+ +F +
Sbjct: 182 PDVMTYSSL--ITGLGKDGETVKAF----------KLFQEMKRRGRKPDSITFTALMDAL 229
Query: 77 HRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
+ +D+ LE ++ R +P + L + L A +L R+GC P
Sbjct: 230 GKAGRVDDALELLDEMKERGVKPGVVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDV 289
Query: 136 Q-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
I L+ ++ L+ CQ +L +M+ G PD T N L++ L L +A
Sbjct: 290 VTYSCLITGLIKASQLDEACQ------VLKKMEKEGCPPDTITYNTLINGLGKAGLLNDA 343
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
++ M S C PD+ +YS +I A+ A + A + +EM ++G+ P +
Sbjct: 344 GRLFDRMKSKGCNPDVVTYSTLITALGKAARVESACVLFEEME-SVGIQPDLFTYCSIIT 402
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
L ++ A + + KG Y + + A K M E G +P
Sbjct: 403 VLGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLP 462
Query: 311 YIKVRQKVVEGLAGVGE 327
+ ++ GL+ E
Sbjct: 463 DVATYDALLLGLSKTKE 479
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 60/265 (22%), Positives = 113/265 (42%), Gaps = 5/265 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALA 121
PN +++ + + DE L +R P + Y+ L+S TL L A
Sbjct: 77 PNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLIS-TLGKAGRLSEAFT 135
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ GCVP L L + +SQ ++L EM+ G PD T + L++ L
Sbjct: 136 LFAEMRERGCVPDTFTYNSLIYG-LGKVGRSQKAMELLEEMERHGCPPDVMTYSSLITGL 194
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ V+A K+ + M PD +++ ++ A+ A + +DA+E++ EM G+ P
Sbjct: 195 GKDGETVKAFKLFQEMKRRGRKPDSITFTALMDALGKAGRVDDALELLDEMK-ERGVKPG 253
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ A ++ +A +++ ++R GC Y ++ G ++ + A + +
Sbjct: 254 VVTYNALIAGFGKVGDLVEAYNLLDEMKRNGCKPDVVTYSCLITGLIKASQLDEACQVLK 313
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVG 326
M + G P ++ GL G
Sbjct: 314 KMEKEGCPPDTITYNTLINGLGKAG 338
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/186 (22%), Positives = 80/186 (43%), Gaps = 1/186 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + Q + EM+ G PD T N ++SL + EA K+ + M + +PD
Sbjct: 404 LGKAGQVDDADRLFSEMRGKGLSPDVITYNAFLNSLGRGGRFKEARKIFEDMKESGLLPD 463
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y ++ +S ++ +DA ++KE++ G + L + + +A E++
Sbjct: 464 VATYDALLLGLSKTKEVDDACGLLKELI-EQGCAFDSLKFDECLEILTSWGNVDEAHELL 522
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+F KG G Y +++ + A T+ + E+G P I ++ L
Sbjct: 523 QFANSKGLWPGASSYNALIDALAKAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQT 582
Query: 326 GEWKLA 331
G+ A
Sbjct: 583 GQIDTA 588
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 68/158 (43%), Gaps = 1/158 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T N L+++L Q EA + + + +A+ PD+ SYS +I ++ A K A+E+
Sbjct: 7 PNVVTYNSLLNALAKAGQCEEAQLLFEELKAAKWTPDVVSYSCLINSLGRAGKWEAALEV 66
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM G P + L + +A+ ++ + GC + Y ++
Sbjct: 67 VAEMQAK-GCKPNLWTYNTLVDCLGKAGQFDEALRLLAEMRDNGCVPDVRTYNCLISTLG 125
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ A M ERG +P ++ GL VG
Sbjct: 126 KAGRLSEAFTLFAEMRERGCVPDTFTYNSLIYGLGKVG 163
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 72/170 (42%), Gaps = 13/170 (7%)
Query: 68 SFLSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQSLHPLPLALAI 122
+FL++ + R K + ++M ES + P +A YD LL L + A +
Sbjct: 434 AFLNSLGRGGRFKEARKIFEDMKESGL------LPDVATYDALL-LGLSKTKEVDDACGL 486
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L+ + GC ++ L ++L S G P + N L+ +L
Sbjct: 487 LKELIEQGCA-FDSLKFDECLEILTSWGNVDEAHELLQFANSKGLWPGASSYNALIDALA 545
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ EA L+ + PD+ SYS +I A+ + + A E+++EM
Sbjct: 546 KAGRVSEAFNTLEDLKEQGGKPDIVSYSSLISALGQTGQIDTAFELLEEM 595
>gi|255593593|ref|XP_002535906.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223521567|gb|EEF26476.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 183
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ + D+LL+MK+ G PD T N LVS C + L EAA+V+ M+ +PD+
Sbjct: 22 KKGKLNEARDLLLDMKNNGLFPDRNTFNILVSGYCKLGWLKEAAQVIDVMARNNILPDVW 81
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+++IG + K + A + EM N+ L+P + K E+I+
Sbjct: 82 TYNMLIGGLCKDGKIDGAFRLRDEME-NLKLLPDVVTYTTLINGCFEYSSSLKGFELIDE 140
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+E KG Y VVV + Y+ GK + E
Sbjct: 141 MEGKGVKPNAVTYNVVV------KWYVKEGKMDNALNE 172
>gi|414885834|tpg|DAA61848.1| TPA: leaf protein [Zea mays]
Length = 637
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 112/247 (45%), Gaps = 28/247 (11%)
Query: 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEML---ESFI 90
LEE +R KD +P ++ F + L F + + ++++L E F
Sbjct: 293 LEEALRCVQQMKDAGSVPNVV-IFN---------TLLKGFLDANDMAAVNKILGLMEKF- 341
Query: 91 PLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
++P + Y + L+ T SL + + + + + +G P PQ+ +L+ ++ R
Sbjct: 342 GIKP---DIVTYSHQLN-TFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFV-RAQ 396
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + D+LL+M +G P+ T ++S C++ + A +V M + P+L ++
Sbjct: 397 QPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFE 456
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I S ++ A E++ +M+ G+ P+Q +A A WKAV + E +
Sbjct: 457 TLIWGYSEQKQPWKAEEVL-QMMRETGVKPKQSTYCLIADA-------WKAVGLTENINN 508
Query: 271 -KGCPIG 276
G P G
Sbjct: 509 SNGSPNG 515
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L +A++E + +++ + +MK G HP T N L+ + + E+ +V M
Sbjct: 143 LINAFVEAKRMGEAI-NTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201
Query: 201 ECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
V P+L +Y+I++ A R +A ++ +M G P +A+A N E W
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAG-GFEPDIVTYNTIASAYANNDETW 260
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQK 317
+A E+I ++ + + + +++ G CRE L A + V M + G +P + +
Sbjct: 261 RAEELIVEIQTR-VRTSERTWGIIIGGY--CREGRLEEALRCVQQMKDAGSVPNVVIFNT 317
Query: 318 VVEGL 322
+++G
Sbjct: 318 LLKGF 322
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 121/284 (42%), Gaps = 8/284 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEML 86
+L T V+A D ++ ++ ++G + P+ ++ S + N +E++
Sbjct: 207 NLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELI 266
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
I R R+ + + Y + L AL +Q+ +G VP I L +L
Sbjct: 267 VE-IQTRVRTSERTWGIIIGGYCREGR--LEEALRCVQQMKDAGSVPNVVIFNTLLKGFL 323
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + +V IL M+ G PD T ++ +++ ++ + + V M A PD
Sbjct: 324 DANDMA-AVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDP 382
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ YSI+ A++ A +++ +M ++GL P V + + +M A+ + +
Sbjct: 383 QVYSILAKGFVRAQQPEKAEDLLLQMS-HLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ + G + +E ++ G E ++ A + + M E G P
Sbjct: 442 KMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKP 485
>gi|294461967|gb|ADE76539.1| unknown [Picea sitchensis]
Length = 486
Score = 65.9 bits (159), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 97/214 (45%), Gaps = 4/214 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + L G P+ + +L +E +C +++ + ++ G P+ T N L+
Sbjct: 187 AIKAFHQMLEFGYEPLAKHFNVLLIVLIEHKCLETALS-LFKKLHEFGISPNTRTYNILI 245
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C D+L A + M C+PD+E+YSI++ + + A+ ++ EM LN G
Sbjct: 246 RAHCHSDKLSHAYFLFNKMHKQGCIPDVETYSILMQGLCRKSQVKTALGVLDEM-LNKGY 304
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAG 297
+P + +L + +A ++ ++ GC Y V+ G C E R + A
Sbjct: 305 VPDALTYNTLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRA-LDAC 363
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M E G +P + +V GL G++ A
Sbjct: 364 QILRDMPENGCLPNALSYRTLVNGLCNEGKFDEA 397
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 37/212 (17%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A + + + GC+P + +L L R+ Q ++ +L EM + GY PD T N
Sbjct: 254 LSHAYFLFNKMHKQGCIPDVETYSILMQG-LCRKSQVKTALGVLDEMLNKGYVPDALTYN 312
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++SLC L EA ++L M C PD+ +Y+ VI + DA +++++M N
Sbjct: 313 TLLNSLCRKMNLREAYRLLSKMKVMGCNPDVINYNTVITGFCREGRALDACQILRDMPEN 372
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GC Y +V G ++
Sbjct: 373 ------------------------------------GCLPNALSYRTLVNGLCNEGKFDE 396
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A V M GFIP+I + ++ GL G+
Sbjct: 397 AKDFVEEMISNGFIPHISIYHLLITGLCNEGK 428
>gi|218184398|gb|EEC66825.1| hypothetical protein OsI_33257 [Oryza sativa Indica Group]
Length = 948
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GCVP + + A ++ +++ A +L EM +G D T + +V
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEA-ATLLNEMLLMGCAADVNTFDDVV 252
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+C + ++ EAA+++ M + C+P + +Y ++ + R+ ++A M +G
Sbjct: 253 RGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM-------LGR 305
Query: 239 MPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+P +V+ V A ++ +A E+ E + KGC Y +++ G + A
Sbjct: 306 VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRISSA 365
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ + M ++GF P + V+ G W
Sbjct: 366 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM+S G +PD + N ++ LC +Q+ EA + + + V + +Y+ +I A+
Sbjct: 438 LIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALL 497
Query: 218 TARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ DAV + KEM+L+ + ++ G++ A+ + + +++ ++E + KG
Sbjct: 498 RDGRWQDAVRLAKEMILHGCSLDVVSYNGLI----KAMCKDGNVDRSLVLLEEMAEKGIK 553
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y +++ + R A + M +G P I ++ GL +G W A +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG-WMHAAL 611
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T +LC + + EA +L+GM+ CVPD Y VI A+ +A +
Sbjct: 173 PTTFTFGVAARALCRLGRANEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM+L MG V + + +A +++ + KGC G Y +++G
Sbjct: 233 LNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 291
Query: 289 ECRE 292
R+
Sbjct: 292 RVRQ 295
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T + L+ LC + ++ A ++L+ M P++ +Y+IV+ + +D
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRISSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++EM + QG + A + R M +A+ +I+ + +GC Y ++
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGR-MDEAMGLIQEMRSQGCNPDICSYNTIIY 459
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A + E G + ++ L G W+ A
Sbjct: 460 HLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDA 505
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + R + ++ L + S GY N ++ +LC ++ EA +++ M S C P
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGY-------NGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ SY+ +I + + +A E M E +L G++ + AL + AV +
Sbjct: 450 DICSYNTIIYHLCNNEQMEEA-EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIP 310
+ + GC + Y +++ C++ + V+ M E+G P
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAM--CKDGNVDRSLVLLEEMAEKGIKP 554
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q + EM G D + N L+ ++C + + +L+ M+ P+
Sbjct: 496 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 555
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
SY+I+I + R+ DA+E+ K+M LN GL P
Sbjct: 556 NVSYNILISELCKERRVRDALELSKQM-LNQGLAP 589
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V D L +M + G PD T N L++ LC + + A +L+ + + PD+
Sbjct: 567 CKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDI 626
Query: 207 ESYSIVIGAMSTARKTNDAVEMMK 230
+Y+I+I R +DA ++
Sbjct: 627 ITYNILISWHCKVRLLDDAAMLLN 650
>gi|224130680|ref|XP_002320901.1| predicted protein [Populus trichocarpa]
gi|222861674|gb|EEE99216.1| predicted protein [Populus trichocarpa]
Length = 475
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 98/214 (45%), Gaps = 3/214 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I L+ C P P+ + + + + D+ + + P+ + N L+
Sbjct: 154 ALKIFYTILKFDCNPSPKHLNGILEILVSHQNYIKPAFDLFKDAHTYDVFPNTKSYNILI 213
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C Q+ A + M + +PD+ESY I++ A+ + N AV+++++M LN G
Sbjct: 214 RAFCLNGQISMAYSLFNQMFKRDVMPDVESYRILMQALCRKSQVNGAVDLLEDM-LNKGY 272
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAG 297
+P + +L +++ +A +++ ++ KGC Y V+ G C E R + A
Sbjct: 273 VPDALSYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRA-MDAC 331
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
K + M G +P + + +V GL G + A
Sbjct: 332 KVLEDMESNGCMPNLVSYRTLVGGLCDQGMFDEA 365
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 86/213 (40%), Gaps = 39/213 (18%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
+ +A ++ + + +P V R+L+ + L R+ Q D+L +M + GY PD +
Sbjct: 222 ISMAYSLFNQMFKRDVMPDVESYRILMQA--LCRKSQVNGAVDLLEDMLNKGYVPDALSY 279
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC +L EA K+L M C PD+ Y+ VI + DA +++++M
Sbjct: 280 TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIIHYNTVILGFCREGRAMDACKVLEDM-- 337
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
E GC Y +V G + +
Sbjct: 338 ----------------------------------ESNGCMPNLVSYRTLVGGLCDQGMFD 363
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + M +GF P+ V +++G VG+
Sbjct: 364 EAKSHLEEMMMKGFSPHFAVSNALIKGFCNVGK 396
>gi|302758218|ref|XP_002962532.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
gi|300169393|gb|EFJ35995.1| hypothetical protein SELMODRAFT_404389 [Selaginella moellendorffii]
Length = 1031
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 73/140 (52%), Gaps = 4/140 (2%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ Q+V D++ E S G+ PD T + L LC ++ EA +++K MS C P+L
Sbjct: 342 CKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGKGCTPNL 401
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I + A KT A E+++ +V + G +P + L + KA++M+E
Sbjct: 402 VTYNTLIDGLCKASKTEKAYELLESLV-SSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 460
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+ ++GC Y ++EG
Sbjct: 461 GMLKRGCTPSVITYTALMEG 480
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/160 (30%), Positives = 74/160 (46%), Gaps = 5/160 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P C T N L+S LC + A ++ S+ VPD+ +YSI+ + + ++A E+
Sbjct: 329 PSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 388
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+KEM G P + L + KA E++E L G Y ++V+G
Sbjct: 389 VKEMS-GKGCTPNLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGL- 446
Query: 289 ECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
C+E L A K V GM +RG P + ++EGL G
Sbjct: 447 -CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 485
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 105/258 (40%), Gaps = 8/258 (3%)
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
FL +N I M E L P +L+ +L ++ + A +L +
Sbjct: 131 FLQTLLENGSSDRIPAMFERM--LDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKV 188
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
G P + +L+ A+ C++ + D L ++I PD N ++ C +
Sbjct: 189 RGFKPEVSVYTILTRAF----CKTGRLKDALEIFRNIP-SPDAIAYNAIIHGHCRKNDCD 243
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
A + LK M+ + PD+ +Y+I+I + A KT+ A EM+ EMV + G+ P +
Sbjct: 244 GALEFLKEMNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSI 302
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
L + +A ++ + + C Y ++ G + + A V GF
Sbjct: 303 MDGLCKAGKFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKDLVDEFVSSGF 362
Query: 309 IPYIKVRQKVVEGLAGVG 326
+P + + +GL G
Sbjct: 363 VPDVVTYSILADGLCKRG 380
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A L+ +GCVP V +++ L + + + +L +M G PD T N L
Sbjct: 592 AFPFLESMHSAGCVPDVVSYNIIIDG--LFKASKPKEARQVLDQMIQAGIPPDAVTYNTL 649
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C ++ +A +LK M A PD +Y+ +I +S + DA E+M EM+ N
Sbjct: 650 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRN 707
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++ + SG VP +L+ L +R + +++ EM G P+ T N L+
Sbjct: 350 AKDLVDEFVSSGFVPDVVTYSILADG-LCKRGRIDEAFELVKEMSGKGCTPNLVTYNTLI 408
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + +A ++L+ + S+ VPD+ +Y+I++ + + + A++M++ M L G
Sbjct: 409 DGLCKASKTEKAYELLESLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM-LKRGC 467
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L + +A + + + K C Y +V G + A K
Sbjct: 468 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 527
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
V G+ RG PYI V +++G G
Sbjct: 528 VVDGI--RG-TPYIDVYNALMDGYCKEG 552
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 95/216 (43%), Gaps = 19/216 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCN 175
A +++ GC P L+ + ++ C+ ++ ++L + S G+ PD T
Sbjct: 385 AFELVKEMSGKGCTP----NLVTYNTLIDGLCKASKTEKAYELLESLVSSGFVPDVVTYT 440
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V LC +L +A K+++GM C P + +Y+ ++ + + ++A + KEMV
Sbjct: 441 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 500
Query: 236 MGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
V V +++R E K V+ I +G P Y +++G C+E
Sbjct: 501 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGI-----RGTPY-IDVYNALMDG--YCKEG 552
Query: 294 ILAG--KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
L M RG +P IK V++GL G+
Sbjct: 553 RLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK 588
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/244 (22%), Positives = 101/244 (41%), Gaps = 10/244 (4%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
+ Y+ L+S L + L A ++ LR+GCV + ++R C+ +
Sbjct: 678 NVTYNTLIS-GLSQTNRLGDAYELMHEMLRNGCVVSA---CTTYNTIIDRLCKEGCLKQA 733
Query: 159 LL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
LL M G + T N + LC +L EA+ +L M + + D SY+ VI
Sbjct: 734 LLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIG 790
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ A + + A ++ +EMV GL + A + + +A+ ++ + ++GC
Sbjct: 791 LCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLGLMVQRGCSP 850
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y +V+ + + A + M RG + ++ GL G G K A V
Sbjct: 851 SVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVL 910
Query: 336 QRFA 339
+ A
Sbjct: 911 EEMA 914
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ ++ +M G P+ T N ++ LC ++ EA L+ M SA CVPD+ SY+I+I
Sbjct: 557 IPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIID 616
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A K +A +++ +M+ G+ P + A AV +++ + + G
Sbjct: 617 GLFKASKPKEARQVLDQMI-QAGIPPDAVTYNTLMAQFCKEERFDDAVGILKNMIKAGVD 675
Query: 275 IGFQGYEVVVEG 286
Y ++ G
Sbjct: 676 PDNVTYNTLISG 687
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 82/193 (42%), Gaps = 13/193 (6%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
S + + M GY PD T + ++ SLC ++Q+ +A +L P++ Y+I
Sbjct: 141 SDRIPAMFERMLDAGYAPDSYTYHLVIKSLCQMNQIDKAFTMLDKAKVRGFKPEVSVYTI 200
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL--- 268
+ A + DA+E+ + +P I A + + +EFL
Sbjct: 201 LTRAFCKTGRLKDALEIFRN-------IPSPD-AIAYNAIIHGHCRKNDCDGALEFLKEM 252
Query: 269 -ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
ERK P F Y ++++G + + A + + M +RG P +++GL G+
Sbjct: 253 NERKVAPDVFT-YNILIDGLCKASKTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGK 311
Query: 328 WKLATVVRQRFAE 340
++ A + AE
Sbjct: 312 FERAHSLLAVMAE 324
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 11/198 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L AL +++ L+ GC P ++ +A +E C++ V + I EM S D
Sbjct: 452 LDKALKMVEGMLKRGCTP----SVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADAL 507
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
LV+ C + EA KV+ G+ P ++ Y+ ++ + ++ + ++M
Sbjct: 508 AYVSLVNGYCKSSRTKEAQKVVDGIRG---TPYIDVYNALMDGYCKEGRLDEIPNVFEDM 564
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G +P V L + ++ +A +E + GC Y ++++G + +
Sbjct: 565 ACR-GCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHSAGCVPDVVSYNIIIDGLFKASK 623
Query: 293 YILAGKTVMGMTERGFIP 310
A + + M + G P
Sbjct: 624 PKEARQVLDQMIQAGIPP 641
>gi|357134934|ref|XP_003569069.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Brachypodium distachyon]
Length = 642
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 58/242 (23%), Positives = 102/242 (42%), Gaps = 8/242 (3%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
V+DEM+ LRP + +AY ++ ++ L +A AIL R + GCVP Q +
Sbjct: 249 VVDEMVHR--GLRPDT---VAYTSIVGAFCKA-RELRMACAILARMVTEGCVPNVQTFTV 302
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L + + + + M + G+ P + N L+ LC I L A V M +
Sbjct: 303 LVKGFFDDG-KVHDALGMWNWMVAEGWAPSTISYNVLIRGLCHIGDLKRALFVFSCMGKS 361
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+C+PD+ +YS +I S A + A+ + +M N G P + + L +
Sbjct: 362 DCLPDVRTYSTLIDGFSKAGDLDVAMSIWNDMT-NAGCKPNVVVYTNMVDVLCKKVMFDQ 420
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A +I+ + + CP + ++ + A GM G P + +++
Sbjct: 421 AENLIDKMSLENCPPNTLTFNTLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLH 480
Query: 321 GL 322
GL
Sbjct: 481 GL 482
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 84/210 (40%), Gaps = 29/210 (13%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+V + M+ G P+ T N L+ +LC D++ A ++L M+ C PD S++ +I
Sbjct: 145 AVVPVYDNMRKAGVEPNVYTYNLLIKALCQNDRVGAARRMLDEMARKGCRPDEVSHTTII 204
Query: 214 GAMSTARKTNDAVEMMKEM-----------------------------VLNMGLMPRQGM 244
A+ + ++A ++ EM +++ GL P
Sbjct: 205 SALCKLDRLDEARGILAEMTPVGASYNAVVHALCGQFRMREVFLVVDEMVHRGLRPDTVA 264
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304
+ A RE+ A ++ + +GC Q + V+V+G + + A M
Sbjct: 265 YTSIVGAFCKARELRMACAILARMVTEGCVPNVQTFTVLVKGFFDDGKVHDALGMWNWMV 324
Query: 305 ERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
G+ P ++ GL +G+ K A V
Sbjct: 325 AEGWAPSTISYNVLIRGLCHIGDLKRALFV 354
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 54/123 (43%), Gaps = 2/123 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L +A++I +GC P + + L ++ +++ +M P+ T N
Sbjct: 383 LDVAMSIWNDMTNAGCKPNVVVYTNMVDV-LCKKVMFDQAENLIDKMSLENCPPNTLTFN 441
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ SLC + + A V GM C P+ +Y+ ++ + DA+ M+ EM LN
Sbjct: 442 TLIRSLCDLGRAGRALNVFHGMRRYGCPPNDRTYNELLHGLFREGNCEDALRMLTEM-LN 500
Query: 236 MGL 238
G
Sbjct: 501 HGF 503
>gi|225459022|ref|XP_002285611.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like isoform 1 [Vitis vinifera]
Length = 610
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 119/270 (44%), Gaps = 44/270 (16%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L TL L A+ +L R L+ C P ++ + +E C+ V
Sbjct: 217 VTYNTILR-TLCDSGKLKQAMEVLDRQLQKECYP----DVITYTILIEATCKESGVGQAM 271
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM++ G PD T N L++ +C +L EA K L M S C P++ +++I++ +M
Sbjct: 272 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 331
Query: 217 STARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALR---------- 253
+ + DA +++ +M L G P RQG++ + L
Sbjct: 332 CSTGRWMDAEKLLSDM-LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 390
Query: 254 ------------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
++M +A+E ++ + +GC Y ++ + + +A + +
Sbjct: 391 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 450
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ +G P + V++GL+ VG+ + A
Sbjct: 451 QLSSKGCSPVLITYNTVIDGLSKVGKTERA 480
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 97/216 (44%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+ IL++ GC P L + + + +++ + L M S G +PD T N
Sbjct: 372 LGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI-EYLDIMVSRGCYPDIVTYN 430
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+++LC ++ A ++L +SS C P L +Y+ VI +S KT A++++ EM
Sbjct: 431 TLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM-RR 489
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL P + + L ++ +A++ LE G Y ++ G + R+
Sbjct: 490 KGLKPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDR 549
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M + P ++EG+A G K A
Sbjct: 550 AIDFLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 585
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+K++DEM S+P + +L + L A+ L GC P
Sbjct: 271 MKLLDEMRNK------GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQP----N 320
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ + L C + D +L +M G P T N L++ LC L A +L+
Sbjct: 321 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 380
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C P+ SY+ ++ +K + A+E + MV + G P + AL +
Sbjct: 381 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV-SRGCYPDIVTYNTLLTALCKD 439
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ AVE++ L KGC Y V++G + + A K + M +G P I
Sbjct: 440 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 499
Query: 316 QKVVEGLAGVGE 327
+V GL+ G+
Sbjct: 500 SSLVSGLSREGK 511
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 5/185 (2%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
+SG VP +L S + C+S + + L + + PD T N ++ +LC +L
Sbjct: 177 QSGAVPDVITYNVLISGY----CKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKL 232
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
+A +VL EC PD+ +Y+I+I A A++++ EM N G P
Sbjct: 233 KQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM-RNKGSKPDVVTYNV 291
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ + + +A++ + + GC + +++ ++ A K + M +G
Sbjct: 292 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 351
Query: 308 FIPYI 312
P +
Sbjct: 352 CSPSV 356
>gi|195613918|gb|ACG28789.1| leaf protein [Zea mays]
Length = 637
Score = 65.5 bits (158), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 85/178 (47%), Gaps = 11/178 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y + L+ T SL + + + + + +G P PQ+ +L+ ++ R Q + D+L
Sbjct: 348 VTYSHQLN-TFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFV-RAQQPEKAEDLL 405
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
L+M +G P+ T ++S C++ + A +V M + P+L ++ +I S
Sbjct: 406 LQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFETLIWGYSEQ 465
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIG 276
++ A E++ +M+ G+ P+Q +A A WKAV + E + G P G
Sbjct: 466 KQPWKAEEVL-QMMRETGVKPKQSTYCLIADA-------WKAVGLTENINNSNGSPNG 515
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L +A++E + +++ + +MK G HP T N L+ + + E+ +V M
Sbjct: 143 LINAFVEAKRMGEAI-NTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201
Query: 201 ECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
V P+L +Y+I++ A R +A ++ +M G P +A+A N E W
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAG-GFEPDIVTYNTIASAYANNDETW 260
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQK 317
+A E+I ++ + + + +++ G CRE L A + V M + G +P + +
Sbjct: 261 RAEELIVEIQTR-VRTSERTWGIIIGGY--CREGRLEEALRCVQQMKDAGSVPNVVIFNT 317
Query: 318 VVEGL 322
+++G
Sbjct: 318 LLKGF 322
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 59/284 (20%), Positives = 121/284 (42%), Gaps = 8/284 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEML 86
+L T V+A D ++ ++ ++G + P+ ++ S + N +E++
Sbjct: 207 NLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELI 266
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
I R R+ + + Y + L AL +Q+ +G VP I L +L
Sbjct: 267 VE-IQTRVRTSERTWGIIIGGYCREGR--LEEALRCVQQMKDAGSVPNVVIFNTLLKGFL 323
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + +V IL MK G PD T ++ +++ ++ + + V M A PD
Sbjct: 324 DANDMA-AVNKILGLMKKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDP 382
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ YSI+ A++ A +++ +M ++GL P V + + +M A+ + +
Sbjct: 383 QVYSILAKGFVRAQQPEKAEDLLLQMS-HLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ + G + +E ++ G E ++ A + + M E G P
Sbjct: 442 KMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKP 485
>gi|224092332|ref|XP_002309562.1| predicted protein [Populus trichocarpa]
gi|222855538|gb|EEE93085.1| predicted protein [Populus trichocarpa]
Length = 590
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 72/153 (47%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ M S G PD T + L+ C L +A ++ + M S PD+ Y+I+I AM
Sbjct: 431 DLFKNMHSNGNLPDLFTYSMLLDGFCKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAM 490
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
DA ++ E+ + GL+P + + L + +A+E +E GCP
Sbjct: 491 CKFGNLKDARKLFSELFVQ-GLLPNVQIYTTIINNLCKEGLLDEALEAFRNMEGDGCPPD 549
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L+ ++ A + + M +RGF+
Sbjct: 550 EFSYNVIIRGFLQYKDESRAAQLIGEMRDRGFV 582
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 79/184 (42%), Gaps = 1/184 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M +G PD T N L++ LC + + +A + ++ C P + +Y+ +I +
Sbjct: 152 VFSKMIKLGLQPDAVTFNTLINGLCKVGKFAQAVEFFDDFEASGCQPTVYTYTTIINGLC 211
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+T A + K+M G P + +L ++ + +A+++ +++ K
Sbjct: 212 KIGETTAAAGLFKKME-EAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDI 270
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +++G R + A + MT +P I +V+ + G+ A V +
Sbjct: 271 FTYNSLIQGLCNFRRWKEASALLNEMTSLNIMPNIFTFNVLVDAICKEGKVSEAQGVFKT 330
Query: 338 FAEL 341
E+
Sbjct: 331 MTEM 334
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 125/296 (42%), Gaps = 18/296 (6%)
Query: 53 LLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRP-RSRPKI-AYDYLLSYTL 110
L EEA PN ++ + K+++E L+ F ++ R P I Y+ L+ L
Sbjct: 222 LFKKMEEAGCQPNVVTYNILIDSLCKDKLVNEALDIFSYMKAKRISPDIFTYNSLIQ-GL 280
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGY 167
+ A A+L +P + + ++ C+ V++ + M +G
Sbjct: 281 CNFRRWKEASALLNEMTSLNIMP----NIFTFNVLVDAICKEGKVSEAQGVFKTMTEMGV 336
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T + L+ ++VEA K+ M + C PD SY+I+I A++ ++A +
Sbjct: 337 EPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKGCKPDAFSYNILIKGYCKAKRIDEAKQ 396
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ EM+ + GL P + L + +A ++ + + G Y ++++G
Sbjct: 397 LFNEMI-HQGLTPDNVNYNTLIHGLCQLGRLREAQDLFKNMHSNGNLPDLFTYSMLLDGF 455
Query: 288 LECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
C+E L A + M P I + +++ + G K A R+ F+EL
Sbjct: 456 --CKEGYLGKAFRLFRVMQSTYLKPDIAMYNILIDAMCKFGNLKDA---RKLFSEL 506
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 96/239 (40%), Gaps = 39/239 (16%)
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
SGC P + + L + ++ + A + +M+ G P+ T N L+ SLC D+LV
Sbjct: 194 SGCQPTVYTYTTIING-LCKIGETTAAAGLFKKMEEAGCQPNVVTYNILIDSLCK-DKLV 251
Query: 189 -EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP------- 240
EA + M + PD+ +Y+ +I + R+ +A ++ EM ++ +MP
Sbjct: 252 NEALDIFSYMKAKRISPDIFTYNSLIQGLCNFRRWKEASALLNEMT-SLNIMPNIFTFNV 310
Query: 241 ------RQGMVIKVAAALRANREMW----------------------KAVEMIEFLERKG 272
++G V + + EM +A ++ + + KG
Sbjct: 311 LVDAICKEGKVSEAQGVFKTMTEMGVEPDVVTYSSLMYGYSLRMEIVEARKLFDAMITKG 370
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
C Y ++++G + + A + M +G P ++ GL +G + A
Sbjct: 371 CKPDAFSYNILIKGYCKAKRIDEAKQLFNEMIHQGLTPDNVNYNTLIHGLCQLGRLREA 429
>gi|147833323|emb|CAN61988.1| hypothetical protein VITISV_026694 [Vitis vinifera]
Length = 553
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 60/270 (22%), Positives = 119/270 (44%), Gaps = 44/270 (16%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L TL L A+ +L R L+ C P ++ + +E C+ V
Sbjct: 160 VTYNTILR-TLCDSGKLKQAMEVLDRQLQKECYP----DVITYTILIEATCKESGVGQAM 214
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM++ G PD T N L++ +C +L EA K L M S C P++ +++I++ +M
Sbjct: 215 KLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSM 274
Query: 217 STARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALR---------- 253
+ + DA +++ +M L G P RQG++ + L
Sbjct: 275 CSTGRWMDAEKLLSDM-LRKGCSPSVVTFNILINFLCRQGLLGRAIDILEKMPMHGCTPN 333
Query: 254 ------------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
++M +A+E ++ + +GC Y ++ + + +A + +
Sbjct: 334 SLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDIVTYNTLLTALCKDGKVDVAVEILN 393
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ +G P + V++GL+ VG+ + A
Sbjct: 394 QLSSKGCSPVLITYNTVIDGLSKVGKTERA 423
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ IL++ GC P L + + + +++ + L M S G +PD T N L+
Sbjct: 318 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI-EYLDIMVSRGCYPDIVTYNTLL 376
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A ++L +SS C P L +Y+ VI +S KT A++++ EM GL
Sbjct: 377 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM-RRKGL 435
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + L ++ +A++ LE G Y ++ G + R+ A
Sbjct: 436 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 495
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M + P ++EG+A G K A
Sbjct: 496 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 528
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+K++DEM S+P + +L + L A+ L GC P
Sbjct: 214 MKLLDEMRNK------GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQP----N 263
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ + L C + D +L +M G P T N L++ LC L A +L+
Sbjct: 264 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 323
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C P+ SY+ ++ +K + A+E + MV + G P + AL +
Sbjct: 324 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV-SRGCYPDIVTYNTLLTALCKD 382
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ AVE++ L KGC Y V++G + + A K + M +G P I
Sbjct: 383 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 442
Query: 316 QKVVEGLAGVGE 327
+V GL+ G+
Sbjct: 443 SSLVSGLSREGK 454
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 80/185 (43%), Gaps = 5/185 (2%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
+SG VP +L S + C+S + + L + + PD T N ++ +LC +L
Sbjct: 120 QSGAVPDVITYNVLISGY----CKSGEIDNALQVLDRMNVAPDVVTYNTILRTLCDSGKL 175
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
+A +VL EC PD+ +Y+I+I A A++++ EM N G P
Sbjct: 176 KQAMEVLDRQLQKECYPDVITYTILIEATCKESGVGQAMKLLDEM-RNKGSKPDVVTYNV 234
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ + + +A++ + + GC + +++ ++ A K + M +G
Sbjct: 235 LINGICKEGRLDEAIKFLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDMLRKG 294
Query: 308 FIPYI 312
P +
Sbjct: 295 CSPSV 299
>gi|15219049|ref|NP_175673.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207559|sp|Q9SSR6.1|PPR78_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g52640, mitochondrial; Flags: Precursor
gi|5903042|gb|AAD55601.1|AC008016_11 Contains 2 PF|01535 DUF domains [Arabidopsis thaliana]
gi|45773940|gb|AAS76774.1| At1g52640 [Arabidopsis thaliana]
gi|62320530|dbj|BAD95108.1| hypothetical protein [Arabidopsis thaliana]
gi|332194712|gb|AEE32833.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 523
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A + L CV + LL +A L+ C+S V + EM ++G PD +
Sbjct: 227 ARKVFDEMLERNCV----VDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFA 282
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ + C + A KVL M + VP++ +++ +I + K +DA ++ EM+
Sbjct: 283 IFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMI-Q 341
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + A + E+ +A +++ ++R C Y +V++ + +
Sbjct: 342 KGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDR 401
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + GM+ER F P + ++ GL
Sbjct: 402 ATEIWEGMSERKFYPTVATYTVMIHGL 428
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L R R VP + + ++ C+++ V D +L EM G +PD T N
Sbjct: 297 AYKVLDRMKRYDLVP----NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYN 352
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ C ++ A K+L M +C+PD +Y++V+ + + + A E+ + M
Sbjct: 353 SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSER 412
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + +R ++ +A E + +G P
Sbjct: 413 KFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIP 451
>gi|224092696|ref|XP_002309701.1| predicted protein [Populus trichocarpa]
gi|222855677|gb|EEE93224.1| predicted protein [Populus trichocarpa]
Length = 597
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 48/220 (21%), Positives = 97/220 (44%), Gaps = 16/220 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A +L++ +GC P ++ S ++ C+ + V DI MK+ G PD T
Sbjct: 217 AAGLLKKMEEAGCQP----NMVTYSTLIDSLCRDRLVNEALDIFSYMKAKGISPDIFTYT 272
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + EA+ +L M+S +PD+ ++++++ K ++A+ ++K M
Sbjct: 273 SLIQGLCKFSRWKEASALLNEMTSLNIMPDIVTFNVLVDTFCKEGKVSEALGVLKTMT-E 331
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAV----EMIEFLERKGCPIGFQGYEVVVEGCLECR 291
MG+ P + ++L +W V ++ + KGC Y +++ G + +
Sbjct: 332 MGVEPN----VVTYSSLMYGYSLWTDVVEARKLFHVMITKGCKPNIFSYNILINGYCKAK 387
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M +G P ++ G +G+ + A
Sbjct: 388 RIDEAMQLFNEMIHQGLTPNNVSYNTLIHGFCQLGKLREA 427
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 73/157 (46%), Gaps = 1/157 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ M + G PD T + L+ C L +A ++ + M S P+L Y+I++ AM
Sbjct: 429 DLFRNMCTNGNLPDLFTYSILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYTILVHAM 488
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ DA ++ E+ + GL P + + L + +A+E +E GCP
Sbjct: 489 CKSGNHKDARKLFSELFVQ-GLQPHVQLYTTIINGLCKEGLLDEALEAFRNMEADGCPPD 547
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
Y V++ G L+ ++ A V M +RGFI ++
Sbjct: 548 EISYNVIIRGLLQHKDESRALLLVGEMRDRGFIADVR 584
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L + L ++L + ++ G P L + + +Q+V ++ +M + G PD
Sbjct: 141 LQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV-ELFDDMVAKGCQPDVY 199
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N +++ LC I + AA +LK M A C P++ +YS +I ++ R N+A+++ M
Sbjct: 200 TYNTIINGLCKIGETAAAAGLLKKMEEAGCQPNMVTYSTLIDSLCRDRLVNEALDIFSYM 259
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 45/213 (21%)
Query: 135 PQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P I L S ++ CQ Q V +L ++ +G P T L++ LC + + +A
Sbjct: 126 PNIYTL--SIFMNCFCQLQRVDLGFSVLAKVIKLGLQPTIVTFTTLINGLCKVGEFAQAV 183
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++ M + C PD+ +Y+ +I + +T A ++K+M
Sbjct: 184 ELFDDMVAKGCQPDVYTYNTIINGLCKIGETAAAAGLLKKM------------------- 224
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFI 309
E GC Y +++ CR+ ++ A M +G
Sbjct: 225 -----------------EEAGCQPNMVTYSTLIDSL--CRDRLVNEALDIFSYMKAKGIS 265
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P I +++GL WK A+ + L
Sbjct: 266 PDIFTYTSLIQGLCKFSRWKEASALLNEMTSLN 298
>gi|242049534|ref|XP_002462511.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
gi|241925888|gb|EER99032.1| hypothetical protein SORBIDRAFT_02g027050 [Sorghum bicolor]
Length = 643
Score = 65.1 bits (157), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 44/178 (24%), Positives = 87/178 (48%), Gaps = 11/178 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y + L+ T SL + + + + + +G P PQ+ +L+ ++ R Q + D+L
Sbjct: 353 VTYSHQLN-TFSSLGHMAKCMKVFDKMIEAGIEPDPQVYSILAKGFV-RAKQPEKAEDLL 410
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
L+M +G P+ T ++S C++ + A +V + M + P+L ++ +I S
Sbjct: 411 LQMSHLGVCPNVVTFTTVISGWCSVADMESAMRVYEKMCKSGVYPNLRTFETLIWGYSEQ 470
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIG 276
++ A E++ +M+ G+ P++ +A A WKAV +IE + G P G
Sbjct: 471 KQPWKAEEVL-QMMRETGVKPKESTHRLIADA-------WKAVGLIENINNSNGSPNG 520
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-S 199
L +A++E + +++ + +MK G HP T N L+ + + E+ +V M
Sbjct: 148 LINAFVEAKRMGEAI-NTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGIE 206
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P+L +Y+I++ A R +A ++ +M G+ P +A+A N E W
Sbjct: 207 GSIKPNLTTYNILVKAWCDRRNLEEAWGVVGKMRAG-GVEPDIVTYNTIASAYANNDETW 265
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQK 317
+A E+I ++ + + + +++ G CRE L A + V M + G +P + +
Sbjct: 266 RAEELIVEIQTR-VRTSERTWGIIIGGY--CRESRLEEALRCVQQMKDAGIVPNVVIFNT 322
Query: 318 VVEGLAGVGE 327
+++G V +
Sbjct: 323 LLKGFLDVND 332
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 62/300 (20%), Positives = 128/300 (42%), Gaps = 8/300 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEML 86
+L T V+A D ++ ++ ++G P+ ++ S + N +E++
Sbjct: 212 NLTTYNILVKAWCDRRNLEEAWGVVGKMRAGGVEPDIVTYNTIASAYANNDETWRAEELI 271
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
I R R+ + + Y +S L AL +Q+ +G VP I L +L
Sbjct: 272 VE-IQTRVRTSERTWGIIIGGYCRESR--LEEALRCVQQMKDAGIVPNVVIFNTLLKGFL 328
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + +V +IL M+ G PD T ++ +++ ++ + + KV M A PD
Sbjct: 329 DVNDMA-AVNNILGLMEQFGIKPDIVTYSHQLNTFSSLGHMAKCMKVFDKMIEAGIEPDP 387
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ YSI+ A++ A +++ +M ++G+ P V + + +M A+ + E
Sbjct: 388 QVYSILAKGFVRAKQPEKAEDLLLQMS-HLGVCPNVVTFTTVISGWCSVADMESAMRVYE 446
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + G + +E ++ G E ++ A + + M E G P + + + VG
Sbjct: 447 KMCKSGVYPNLRTFETLIWGYSEQKQPWKAEEVLQMMRETGVKPKESTHRLIADAWKAVG 506
>gi|302809105|ref|XP_002986246.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
gi|300146105|gb|EFJ12777.1| hypothetical protein SELMODRAFT_123660 [Selaginella moellendorffii]
Length = 725
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 79/351 (22%), Positives = 148/351 (42%), Gaps = 38/351 (10%)
Query: 4 GAIKSCRSLV--NFRPCLLQFSSL-------RSMSS----LRTLEETVRAAVDAKDYQQI 50
GA++ R + +RP + ++++ R + S + +EE+ D Y I
Sbjct: 167 GAVELVRKMTERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTI 226
Query: 51 PELL---GSFEEACQ----------NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR 97
+ L G ++AC+ +PN ++ S H + ++ E+ L+ +R
Sbjct: 227 VDSLVKSGKVDDACRLVEAMVSKGCSPNVVTYSSLL---HGLCKAGKLDEATALLQRMTR 283
Query: 98 PKIAYDYLLSYTLQSLH----PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
+ + + T+ H + A +L+ + GC P +L A+ +C
Sbjct: 284 SGCSPNIVTYNTIIDGHCKLGRIDEAYHLLEEMVDGGCQPNVVTYTVLLDAFC--KCGKA 341
Query: 154 SVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
A L+E M GY P+ T N L+ C D++ A ++L M CVP++ SY+ V
Sbjct: 342 EDAIGLVEVMVEKGYVPNLFTYNSLLDMFCKKDEVERACQLLSSMIQKGCVPNVVSYNTV 401
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + A K ++ V ++++M+ N +P + A+ + A E+ ++ G
Sbjct: 402 IAGLCKATKVHEGVLLLEQMLSN-NCVPDIVTFNTIIDAMCKTYRVDIAYELFNLIQESG 460
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTER-GFIPYIKVRQKVVEGL 322
C Y +V G + R + A + MT + G P I V++GL
Sbjct: 461 CTPNLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSPDIITYNTVIDGL 511
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 51/228 (22%), Positives = 102/228 (44%), Gaps = 9/228 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L A+ +L+ + +G P + + L C++ V + +L +M G PD
Sbjct: 60 LDDAIRLLEEMVDNGFAP----NVFSYNTVLHGFCKANRVENALWLLEQMVMRGCPPDVV 115
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ +++ LC +DQ+ EA +V+ M C P++ +Y ++ + AVE++++M
Sbjct: 116 SYTTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKM 175
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECR 291
G P + L + R++ A+++ + +E G CP Y +V+ ++
Sbjct: 176 T-ERGYRPNAITYNNIMHGLCSGRKLDSALQLFKEMEESGSCPPDVFTYSTIVDSLVKSG 234
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
+ A + V M +G P + ++ GL G+ AT + QR
Sbjct: 235 KVDDACRLVEAMVSKGCSPNVVTYSSLLHGLCKAGKLDEATALLQRMT 282
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 81/180 (45%), Gaps = 4/180 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G G ++ LC Q +A + MS C PD +Y+ +I +S + +
Sbjct: 1 MNRKGLKAHAGVHKSILRGLCDAGQCSDAVLHFREMSKT-CPPDSVTYNTMINGLSKSDR 59
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGY 280
+DA+ +++EMV N G P V +ANR + A+ ++E + +GCP Y
Sbjct: 60 LDDAIRLLEEMVDN-GFAPNVFSYNTVLHGFCKANR-VENALWLLEQMVMRGCPPDVVSY 117
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
V+ G + + A + + M +RG P + +V+G VG+ A + ++ E
Sbjct: 118 TTVINGLCKLDQVDEACRVMDKMIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTE 177
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 150 CQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
C + +D +L + + PD T N +++ L D+L +A ++L+ M P++
Sbjct: 21 CDAGQCSDAVLHFREMSKTCPPDSVTYNTMINGLSKSDRLDDAIRLLEEMVDNGFAPNVF 80
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
SY+ V+ A + +A+ ++++MV+ G P V L ++ +A +++
Sbjct: 81 SYNTVLHGFCKANRVENALWLLEQMVMR-GCPPDVVSYTTVINGLCKLDQVDEACRVMDK 139
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++GC Y +V+G + A + V MTERG+ P ++ GL
Sbjct: 140 MIQRGCQPNVITYGTLVDGFCRVGDLDGAVELVRKMTERGYRPNAITYNNIMHGL 194
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 62/140 (44%), Gaps = 1/140 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L AL ILQ L G P + + WL +R + + ++L M G PD T N
Sbjct: 587 LDKALEILQLLLSKGSYP-DVVTFSIFIDWLSKRGRLRQAGELLETMLRAGLVPDTVTYN 645
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + +A + + M C PD +Y+ ++G + + D + + + +++
Sbjct: 646 TLLKGFCDASRTEDAVDLFEVMRQCGCEPDNATYTTLVGHLVDKKSYKDLLAEVSKSMVD 705
Query: 236 MGLMPRQGMVIKVAAALRAN 255
G + K+ A++ A+
Sbjct: 706 TGFKLNHELSSKLEASVSAS 725
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 9/213 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILL-EM-KSIGYHP 169
+ + +A + SGC P L+ ++ + C+S+ A+ LL EM + G P
Sbjct: 444 YRVDIAYELFNLIQESGCTP----NLVTYNSLVHGLCKSRRFDQAEYLLREMTRKQGCSP 499
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T N ++ LC ++ A K+ M S PD +YSIVI ++ R ++A ++
Sbjct: 500 DIITYNTVIDGLCKSKRVDRAYKLFLQMLSDGLAPDDVTYSIVISSLCKWRFMDEANNVL 559
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
E++L G P + + KA+E+++ L KG + + ++ +
Sbjct: 560 -ELMLKNGFDPGAITYGTLIDGFCKTGNLDKALEILQLLLSKGSYPDVVTFSIFIDWLSK 618
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
AG+ + M G +P +++G
Sbjct: 619 RGRLRQAGELLETMLRAGLVPDTVTYNTLLKGF 651
>gi|302784458|ref|XP_002974001.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
gi|300158333|gb|EFJ24956.1| hypothetical protein SELMODRAFT_100394 [Selaginella moellendorffii]
Length = 561
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM+ G P N ++ LC + +A K ++ +C PD+ +++I++ A+
Sbjct: 51 ELLDEMRDRGIPPGVAVHNGVIKGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDAL 110
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + +A ++ + M + +P V L + ++ +A+E+++ + GC
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170
Query: 277 FQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGL 322
Y V+VEG + AG+T G MT RGF P + + ++ GL
Sbjct: 171 VITYSVLVEGLCK------AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 13/249 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
I Y+ LL+ +S L AL ++Q +RSGC P ++ ++ +E C+S+ V
Sbjct: 207 IMYNTLLNGLCKS-RRLDEALELVQLMIRSGCYPT----VVTYNSLMELFCRSKQVDRAF 261
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ M G PD N +++ LC +L +A +LK M +A CVPD+ +YS +I +
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321
Query: 217 STARKTN-----DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+ + +A + EM+ G P G V L R+ +A+ ++ +
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +V+ + + A K M+ER P +++GL+ GE A
Sbjct: 382 EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA 441
Query: 332 TVVRQRFAE 340
V + E
Sbjct: 442 VRVFELMVE 450
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI----GYHPDCGTC 174
+LQ R G P +++ + L C+S+ + D LE+ + G +P T
Sbjct: 190 GFTLLQEMTRRGFQP----DVIMYNTLLNGLCKSRRL-DEALELVQLMIRSGCYPTVVTY 244
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ C Q+ A ++++ MS C PD+ +Y+ VI + + +DA ++K+MV
Sbjct: 245 NSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA 304
Query: 235 NM---GLMPRQGMVIKVAAALRANREMWK---AVEMIEFLERKGCPIGFQGYEVVVEGCL 288
++ ++ + R + + WK A E++E +++ GCP Y VV+EG
Sbjct: 305 ARCVPDVITYSTIIDGLCKDWRVDAD-WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363
Query: 289 ECRE 292
R+
Sbjct: 364 RARK 367
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 15/219 (6%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---------QSVADILLEMKSIG 166
L A A+L++ + + CVP ++ S ++ C+ ++ +IL MK G
Sbjct: 292 LDDAQALLKQMVAARCVP----DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ GT ++ LC + +A +L+ M +E VPDL S+S+VIG++ + + A
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ M+ P + L E+ KAV + E + P G Y V++G
Sbjct: 408 KIFG-MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRP-GVATYNSVLDG 465
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
A + V GM + P ++ GL V
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G P+ T + LV LC + + +L+ M+ PD+ Y+ ++ +
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+R+ ++A+E+++ M+ + G P + ++++ +A +I+ + +GCP
Sbjct: 217 CKSRRLDEALELVQLMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275
Query: 277 FQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAG----VGEWKL 330
Y V+ G CR+ L A + M +P + +++GL +WKL
Sbjct: 276 VINYNTVIAGL--CRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
+ E+ + P T N ++ LC + ++ EA ++++GM EC PD SY +I +
Sbjct: 444 VFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503
Query: 219 ARKTNDAVEMMK 230
+A E+ +
Sbjct: 504 VSCVEEAYELFQ 515
>gi|255557743|ref|XP_002519901.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223540947|gb|EEF42505.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 777
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 80/171 (46%), Gaps = 1/171 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P TCN+L+SSL +++ + +V M PD+ +S ++ A T + +DA
Sbjct: 157 GLFPSLKTCNFLLSSLVKANEVKMSYQVFDIMCHCGVTPDVYLFSTMVNAFCTGGRVDDA 216
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+E+ ++M +G+ P + L N + +A + E +E++ Y V++
Sbjct: 217 IELFRKME-KVGVAPNVVTYNNIIHGLCKNGRLDEAFQFKEKMEKERVKPSLVTYGVLIN 275
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
G ++ + A + M++RG+ P V +++G +G A +R
Sbjct: 276 GLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYCRIGNISTALQIRD 326
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 88/217 (40%), Gaps = 2/217 (0%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R +P + +L L L A IL+ G P + L + R
Sbjct: 260 KERVKPSLVTYGVLINGLVKLERFDEANCILKEMSDRGYAPNNVVYNTLIDGYC-RIGNI 318
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ I +M S G P+ TCN L+ C +Q+ A +L+ M + V + +++ V
Sbjct: 319 STALQIRDDMISNGISPNSVTCNSLIQGYCKSNQMEHAEHLLEEMLTGGGVINQGTFTSV 378
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + + + A+ + EM+L P G++ + + L N + +A+E+ L KG
Sbjct: 379 IHRLCLKCRFDSALLFIMEMLLR-NFKPNDGLLTLLVSGLCQNGKQSEAIELWYRLLEKG 437
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
++ G E A K + M ERG +
Sbjct: 438 FAANTVTSNALIHGLCEAGSKEEAAKLLKEMLERGLV 474
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 70/182 (38%), Gaps = 7/182 (3%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ LC + ++ EA + PD +Y I+I A
Sbjct: 502 EMVRRGIQPDMYTYNMLLHGLCNMGKIEEAGGLWHECKKNGNFPDAYTYGIMIDGYCKAN 561
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGF 277
+ + ++ +EMV M + + +RA N M +A + + + +G P
Sbjct: 562 RVEEGEKLFQEMV----TMKIEQNAVVYGTLIRAYCENGNMREAFRLRDDMRSRGIPQTS 617
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y ++ G A + + M + G P + ++ G +G+ + Q
Sbjct: 618 ATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSPNVVCYTALIGGYCKLGQMHKVDSILQE 677
Query: 338 FA 339
+
Sbjct: 678 MS 679
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 47/105 (44%), Gaps = 5/105 (4%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
C P + L S + C V D + +M+ +G P+ T N ++ LC +L
Sbjct: 191 CGVTPDVYLF--STMVNAFCTGGRVDDAIELFRKMEKVGVAPNVVTYNNIIHGLCKNGRL 248
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
EA + + M P L +Y ++I + + ++A ++KEM
Sbjct: 249 DEAFQFKEKMEKERVKPSLVTYGVLINGLVKLERFDEANCILKEM 293
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 92 LRPRSRPKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
+R R P+ + Y L + L ++ + A +L + G P ++ +A + C
Sbjct: 608 MRSRGIPQTSATYSSLIHGLSNIGLVDSANQLLDEMRKEGLSP----NVVCYTALIGGYC 663
Query: 151 ---QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
Q V IL EM HP+ T +++ C + + AAK+L M+ VPD
Sbjct: 664 KLGQMHKVDSILQEMSINNVHPNKITYTIMINGHCKLGNMKAAAKLLNEMAQKGIVPDAV 723
Query: 208 SYSIVIGAMSTARKTNDAVEM 228
+Y+ + K +A+++
Sbjct: 724 TYNALTNGFCKEGKMEEALKV 744
>gi|297853022|ref|XP_002894392.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340234|gb|EFH70651.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 525
Score = 64.7 bits (156), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A + L + CV + LL +A L+ C+S V + EM ++G PD +
Sbjct: 227 ARKVFDEMLENNCV----VDLLAYNALLDALCKSGDVDGAYKMFQEMGNLGLKPDAYSFA 282
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ S C + A +VL M + VP++ +++ +I + K +DA ++ EM+
Sbjct: 283 IFIHSYCDASDVHSAYQVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMI-Q 341
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + A + E+ +A +++ ++R C Y +V++ + +
Sbjct: 342 KGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDR 401
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ GM+ER F P + ++ GL
Sbjct: 402 VTEIWEGMSERKFYPTVATYTVMIHGL 428
>gi|224108788|ref|XP_002314968.1| predicted protein [Populus trichocarpa]
gi|222864008|gb|EEF01139.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 112/257 (43%), Gaps = 8/257 (3%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ ++ F + H+++ + E+ + + I Y +++ TL + + +ALA+L +
Sbjct: 248 ALINGFCREHKMEEVFELFNE-MAVEGIDPDVITYSTVIN-TLSEMGNVEMALAVLAKMF 305
Query: 128 RSGCVP-VPQIRLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
GC P V L+ ++ R C++ D+ M G P+ N L+ LC+
Sbjct: 306 LRGCSPNVHTFTSLMKGYFMGGRLCEA---LDLWNRMIQEGSEPNTVAYNTLIHGLCSYG 362
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
++VEA V + M P+ +YS +I + A A E+ +M+ N G +P +
Sbjct: 363 KMVEAVSVSQKMERNGVFPNETTYSTLIDGFAKAGDLVGASEIWNKMITN-GCLPNVVVY 421
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L N A+ +IE + CP + ++G + A K + M +
Sbjct: 422 TCMVDVLCRNSMFNHALHLIENMANGNCPPNTITFNTFIKGLCCSGKTEWAMKVLNQMRQ 481
Query: 306 RGFIPYIKVRQKVVEGL 322
G P + +V++GL
Sbjct: 482 YGCAPNVTTYNEVLDGL 498
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/110 (31%), Positives = 51/110 (46%), Gaps = 1/110 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL R GC P +I + A L + Q + I MK G + T N L+
Sbjct: 127 ALKTFYRIGEFGCKPSVKIYNHVLDALLSEN-KFQMINGIYNNMKRDGIELNVYTYNMLL 185
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
+LC D++ A K+L MS C+PD SY+ V+ +M K +A E+
Sbjct: 186 KALCKNDRVDAARKLLAEMSYKGCIPDAVSYTTVVSSMCRLGKVEEAREL 235
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 26/114 (22%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A I + + +GC+P + + L R ++ M + P+ T N +
Sbjct: 402 ASEIWNKMITNGCLPNVVVYTCMVDV-LCRNSMFNHALHLIENMANGNCPPNTITFNTFI 460
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
LC + A KVL M C P++ +Y+ V+ + A++T +A++++ E+
Sbjct: 461 KGLCCSGKTEWAMKVLNQMRQYGCAPNVTTYNEVLDGLFNAKRTREALQIVGEI 514
>gi|302803484|ref|XP_002983495.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
gi|300148738|gb|EFJ15396.1| hypothetical protein SELMODRAFT_118272 [Selaginella moellendorffii]
Length = 561
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 82/172 (47%), Gaps = 12/172 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM+ G P N ++ LC + +A K ++ +C PD+ +++I++ A+
Sbjct: 51 ELLDEMRDRGIPPGVAVHNGVIRGLCKAGRFGDALGYFKTVAGTKCTPDIITFNILVDAL 110
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + +A ++ + M + +P V L + ++ +A+E+++ + GC
Sbjct: 111 VKSGRVEEAFQIFESMHTSSQCLPNVVTYTTVINGLCKDGKLDRAIELLDLMNETGCCPN 170
Query: 277 FQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGL 322
Y V+VEG + AG+T G MT RGF P + + ++ GL
Sbjct: 171 VITYSVLVEGLCK------AGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 62/249 (24%), Positives = 110/249 (44%), Gaps = 13/249 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
I Y+ LL+ +S L AL ++Q +RSGC P ++ ++ +E C+S+ V
Sbjct: 207 IMYNTLLNGLCKS-RRLDEALELVQLMIRSGCYPT----VVTYNSLMELFCRSKQVDRAF 261
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ M G PD N +++ LC +L +A +LK M +A CVPD+ +YS +I +
Sbjct: 262 RLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVAARCVPDVITYSTIIDGL 321
Query: 217 STARKTN-----DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+ + +A + EM+ G P G V L R+ +A+ ++ +
Sbjct: 322 CKDWRVDADWKLEAACEILEMMKQTGCPPNAGTYAVVIEGLCRARKSQQALALLRRMIDS 381
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +V+ + + A K M+ER P +++GL+ GE A
Sbjct: 382 EVVPDLSSFSMVIGSLCKSHDLDAAYKIFGMMSERECKPNPVAYAALIDGLSKGGEVDKA 441
Query: 332 TVVRQRFAE 340
V + E
Sbjct: 442 VRVFELMVE 450
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 87/184 (47%), Gaps = 16/184 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI----GYHPDCGTC 174
+LQ R G P +++ + L C+S+ + D LE+ + G +P T
Sbjct: 190 GFTLLQEMTRRGFQP----DVIMYNTLLNGLCKSRRL-DEALELVQLMIRSGCYPTVVTY 244
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ C Q+ A ++++ MS C PD+ +Y+ VI + + +DA ++K+MV
Sbjct: 245 NSLMELFCRSKQVDRAFRLIQVMSERGCPPDVINYNTVIAGLCRDARLDDAQALLKQMVA 304
Query: 235 NM---GLMPRQGMVIKVAAALRANREMWK---AVEMIEFLERKGCPIGFQGYEVVVEGCL 288
++ ++ + R + + WK A E++E +++ GCP Y VV+EG
Sbjct: 305 ARCVPDVITYSTIIDGLCKDWRVDAD-WKLEAACEILEMMKQTGCPPNAGTYAVVIEGLC 363
Query: 289 ECRE 292
R+
Sbjct: 364 RARK 367
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 15/219 (6%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---------QSVADILLEMKSIG 166
L A A+L++ + + CVP ++ S ++ C+ ++ +IL MK G
Sbjct: 292 LDDAQALLKQMVAARCVP----DVITYSTIIDGLCKDWRVDADWKLEAACEILEMMKQTG 347
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ GT ++ LC + +A +L+ M +E VPDL S+S+VIG++ + + A
Sbjct: 348 CPPNAGTYAVVIEGLCRARKSQQALALLRRMIDSEVVPDLSSFSMVIGSLCKSHDLDAAY 407
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ M+ P + L E+ KAV + E + P G Y V++G
Sbjct: 408 KIFG-MMSERECKPNPVAYAALIDGLSKGGEVDKAVRVFELMVESFRP-GVATYNSVLDG 465
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
A + V GM + P ++ GL V
Sbjct: 466 LCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCRV 504
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 82/180 (45%), Gaps = 9/180 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G P+ T + LV LC + + +L+ M+ PD+ Y+ ++ +
Sbjct: 157 ELLDLMNETGCCPNVITYSVLVEGLCKAGRTDKGFTLLQEMTRRGFQPDVIMYNTLLNGL 216
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+R+ ++A+E+++ M+ + G P + ++++ +A +I+ + +GCP
Sbjct: 217 CKSRRLDEALELVQLMIRS-GCYPTVVTYNSLMELFCRSKQVDRAFRLIQVMSERGCPPD 275
Query: 277 FQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAG----VGEWKL 330
Y V+ G CR+ L A + M +P + +++GL +WKL
Sbjct: 276 VINYNTVIAGL--CRDARLDDAQALLKQMVAARCVPDVITYSTIIDGLCKDWRVDADWKL 333
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 36/72 (50%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
+ E+ + P T N ++ LC + ++ EA ++++GM EC PD SY +I +
Sbjct: 444 VFELMVESFRPGVATYNSVLDGLCGVGRIEEAVRMVEGMIHKECFPDGASYGALIRGLCR 503
Query: 219 ARKTNDAVEMMK 230
+A E+ +
Sbjct: 504 VSCVEEAYELFQ 515
>gi|449462543|ref|XP_004149000.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Cucumis sativus]
Length = 822
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + G P TCN+L+SSL ++ + +V + MS C PD+ S++ VI A+
Sbjct: 195 DVFYLLARKGTFPSLKTCNFLLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINAL 253
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A+E+ +M +G+ P + L N + A E+ E + KG
Sbjct: 254 CKGGKMENAIELFMKME-KLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 312
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
+ Y ++ G ++ + + M GF P + V +++G +G + A ++
Sbjct: 313 LKTYGALINGLIKLNFFDKVNHVLDEMIGSGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 372
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 3/172 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N+L+ LC + +L +A K+ ++ + ++ +Y I++ A
Sbjct: 548 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKAN 607
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ D + E++ M +V + A N + A++++E ++ KG
Sbjct: 608 RIEDVENLFNELLSKK--MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT 665
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G A + M + GF+P + ++ G +G+ A
Sbjct: 666 YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTA 717
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 4/165 (2%)
Query: 146 LERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ CQ+ +VA +L MKS G P+C T + L+ +C I + +A ++ M
Sbjct: 635 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 694
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VP++ Y+ +IG + + A EM+ + + P + + M KA
Sbjct: 695 VPNVVCYTALIGGYCKLGQMDTAESTWLEMI-SFNIHPNKFTYTVMIDGYCKLGNMEKAN 753
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
++ ++ G Y V+ G + + A K M G
Sbjct: 754 NLLIKMKESGIVPDVVTYNVLTNGFCKANDMDNAFKVCDQMATEG 798
>gi|224157081|ref|XP_002337799.1| predicted protein [Populus trichocarpa]
gi|222869732|gb|EEF06863.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 64.7 bits (156), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/166 (28%), Positives = 77/166 (46%), Gaps = 5/166 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL+EM +IG PD T N L+ C D EA ++ M VPDL S+S ++ S
Sbjct: 58 ILIEMLNIGLSPDTTTYNTLLVESCRRDNFSEAKEIFGEMLRQGVVPDLVSFSSLMAVFS 117
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
R + A+ ++M GL+P + + N M +A+++ + + +GC +
Sbjct: 118 RNRHLDQALVYFRDMK-KFGLVPDNVIYTVLMHGYCRNGNMLEALKIRDEMLEQGCVLDV 176
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
Y ++ G C+E +L A K M ERG +P ++ G
Sbjct: 177 IAYNTILNGL--CKEKMLTDADKLFDEMVERGALPDFYTFTTLIHG 220
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/227 (23%), Positives = 93/227 (40%), Gaps = 32/227 (14%)
Query: 17 PCLLQFSSLRSM-SSLRTLEETVRAAVDAKDYQQIPE------LLGSFEEACQNPNPFSF 69
P L+ FSSL ++ S R L++ + D K + +P+ L+ + C+N N
Sbjct: 104 PDLVSFSSLMAVFSRNRHLDQALVYFRDMKKFGLVPDNVIYTVLMHGY---CRNGNMLEA 160
Query: 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRS 129
L K+ DEMLE L IAY+ +L+ L L A + +
Sbjct: 161 L---------KIRDEMLEQGCVL-----DVIAYNTILN-GLCKEKMLTDADKLFDEMVER 205
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQ 186
G +P + + CQ ++ L M PD N L+ C + +
Sbjct: 206 GALP----DFYTFTTLIHGHCQDGNMTKALSLFGTMTQRNIKPDIVAYNTLIDGFCKVGE 261
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ +A+++ GM S + P+ +Y I+I A + ++A + M+
Sbjct: 262 MEKASELWDGMISRKIFPNHITYGILINAYCSVGHVSEAFRLWDVMI 308
>gi|449451888|ref|XP_004143692.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
gi|449529106|ref|XP_004171542.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Cucumis sativus]
Length = 783
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 86/192 (44%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + GCVP + A L+RR Q D+LL+MKS G P+ T N LV
Sbjct: 232 ALDWVNKMSEFGCVPDTVSYNTILDALLKRRLL-QEARDLLLDMKSKGLSPNKHTYNMLV 290
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C + L EA KV++ M+ +P + +Y++++ K ++A + EM M +
Sbjct: 291 CGYCRLGLLKEATKVIEIMTRNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEME-KMNV 349
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + R+ + +IE +++KG Y ++++ + A
Sbjct: 350 LPDVVTYNTLIDGCSQWRDSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATT 409
Query: 299 TVMGMTERGFIP 310
T+ M E G P
Sbjct: 410 TLDKMEENGLSP 421
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 97/218 (44%), Gaps = 11/218 (5%)
Query: 132 VPVPQIRLLLSS--AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC---AIDQ 186
+P P LL +S A+++ Q I +MK + Y P+ TCN L++SL +
Sbjct: 135 LPEPSKELLDTSIGAYVQMD-QPHLATQIFNKMKRLNYRPNLLTCNTLMNSLVRYPSSSS 193
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
++ A +VLK VP+ S++I+I K DA++ + +M G +P
Sbjct: 194 ILLARQVLKDSIKLGVVPNTNSFNILIYGYCLESKVKDALDWVNKMS-EFGCVPDTVSYN 252
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMT 304
+ AL R + +A +++ ++ KG Y ++V C CR +L A K + MT
Sbjct: 253 TILDALLKRRLLQEARDLLLDMKSKGLSPNKHTYNMLV--CGYCRLGLLKEATKVIEIMT 310
Query: 305 ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+P + +V G G+ A +R ++
Sbjct: 311 RNNLLPTVWTYNMLVNGFCNDGKIDEAFRIRDEMEKMN 348
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 69/172 (40%), Gaps = 1/172 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
S V ++ EM G + T N ++ +C + EA L M PD +Y+
Sbjct: 368 DSSEVYSLIEEMDKKGVKCNAVTYNIILKWMCKKGNMTEATTTLDKMEENGLSPDCVTYN 427
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+IGA A K A MM EM + GL + + L +++ +A ++ +
Sbjct: 428 TLIGAYCKAGKMGKAFRMMDEMT-SKGLKIDTWTLNTILHCLCVEKKLDEAYNLLCSASK 486
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+G + Y +++ G + + A M ER +P V+ GL
Sbjct: 487 RGYILDEVSYGILILGYFKDEKGDRALNLWDEMKERQIMPSTITYNSVIGGL 538
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 36/70 (51%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
S G D T N ++SSLC + A +L M + + PD +Y ++I A++ A +
Sbjct: 626 SKGKDIDVVTYNTIISSLCKEGKFENAYDLLTEMEAKKLGPDQYTYKVIIAALTDAGRIK 685
Query: 224 DAVEMMKEMV 233
+A E +MV
Sbjct: 686 EAEEFTLKMV 695
>gi|413952239|gb|AFW84888.1| hypothetical protein ZEAMMB73_407218 [Zea mays]
Length = 668
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IR +ER Q +L +M + CN +++S+C ++ +A K L
Sbjct: 289 IRFFCRGGMVERAIQ------VLQQMTEHECATNTTLCNIVINSICKQGRVDDAFKFLNN 342
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C PD SY+ V+ + A + NDA E++KEMV N P + L
Sbjct: 343 MGSYGCNPDTISYTTVLKGLCRAERWNDAKELLKEMVRN-NCPPNEVTFNTFICILCQKG 401
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ +A+ +IE ++ GC +G Y +V G
Sbjct: 402 LIEQAIMLIEQMQEHGCTVGVVTYNALVNG 431
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL++L LR GC P +L A + Q++A +L EM++ G P+ T N ++
Sbjct: 161 ALSLLDDMLRRGCQPNVVTYTVLLEAMCKNSGFEQAMA-VLDEMRAKGCTPNIVTYNVII 219
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ +C ++ +A +L + S C PD SY+ ++ + +++ +D E+ EM +
Sbjct: 220 NGMCREGRVDDARDLLNRLFSYGCQPDTVSYTTLLKGLCASKRWDDVEELFAEM-MEKNC 278
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + + + +A+++++ + C +V+ + A K
Sbjct: 279 MPNEVTFDMLIRFFCRGGMVERAIQVLQQMTEHECATNTTLCNIVINSICKQGRVDDAFK 338
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M G P V++GL W A
Sbjct: 339 FLNNMGSYGCNPDTISYTTVLKGLCRAERWNDA 371
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/179 (22%), Positives = 77/179 (43%), Gaps = 1/179 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ A+++ EM P+ T N LV+ C L EA ++++ M C P+L +Y+ +
Sbjct: 471 DAAAELVAEMLHRDCPPNVVTFNVLVNFFCQKGFLDEAIELVEQMMEHGCTPNLITYNTL 530
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
++ + DA+E++ +V + G+ P + L + +A++M + G
Sbjct: 531 FDGITKDCSSEDALELLHGLV-SKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIG 589
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + E A + M G +P ++EGLA G K A
Sbjct: 590 MRPKALVYNKILLGLCKRHEIDNAIDFLAYMVSNGCMPNESTYIILIEGLAREGLLKEA 648
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVA 156
+ ++ L+++ Q L A+ ++++ + GC P L+ + + + C S+
Sbjct: 490 VTFNVLVNFFCQKGF-LDEAIELVEQMMEHGCTP----NLITYNTLFDGITKDCSSEDAL 544
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L + S G PD T + ++ L D++ EA ++ P Y+ ++ +
Sbjct: 545 ELLHGLVSKGVSPDVITFSSIIGILSKEDRVEEAIQMFHLAQDIGMRPKALVYNKILLGL 604
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ ++A++ + MV N G MP + I + L + +A +++ L +G
Sbjct: 605 CKRHEIDNAIDFLAYMVSN-GCMPNESTYIILIEGLAREGLLKEAQDLLSMLCSRG 659
>gi|356546522|ref|XP_003541675.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 789
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 79/181 (43%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + C+ + L M+ G PD T N L+ C ++++ +A +++ G+ S C PD
Sbjct: 276 LVKGCKLEKALRFLERMQVTGIKPDIVTYNSLIKGYCDLNRIEDALELIAGLPSKGCPPD 335
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
SY V+G + +K +M++MV + L+P Q + L + A+ +
Sbjct: 336 KVSYYTVMGFLCKEKKIEQVKCLMEKMVQDSNLIPDQVTYNTLIHMLSKHGHADDALAFL 395
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ E KG I GY +V + A V+ M R P + +V+G +
Sbjct: 396 KEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPDVVTYTAIVDGFCRL 455
Query: 326 G 326
G
Sbjct: 456 G 456
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + L E + G+H D + +V S C ++ EA ++ M S C PD
Sbjct: 382 LSKHGHADDALAFLKEAEDKGFHIDKVGYSAIVHSFCQKGRMDEAKSLVIDMYSRSCNPD 441
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ ++ + ++A +M+++M G P + L + + +A EMI
Sbjct: 442 VVTYTAIVDGFCRLGRIDEAKKMLQQM-YKHGCKPNTVSYTALLNGLCHSGKSLEAREMI 500
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E Y VV+ G + A M E+GF P
Sbjct: 501 NVSEEHWWTPNAITYGVVMHGFRREGKLSEACDLTREMVEKGFFP 545
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 60/129 (46%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G P+ + L++ LC + +EA +++ P+ +Y +V+
Sbjct: 464 MLQQMYKHGCKPNTVSYTALLNGLCHSGKSLEAREMINVSEEHWWTPNAITYGVVMHGFR 523
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K ++A ++ +EMV G P + + +L N+++ +A + +E KGC I
Sbjct: 524 REGKLSEACDLTREMV-EKGFFPTPVEINLLIQSLCQNQKVVEAKKYLEECLNKGCAINV 582
Query: 278 QGYEVVVEG 286
+ V+ G
Sbjct: 583 VNFTTVIHG 591
>gi|297727505|ref|NP_001176116.1| Os10g0368800 [Oryza sativa Japonica Group]
gi|20043026|gb|AAM08834.1|AC113335_14 Putative PPR-repeat protein [Oryza sativa Japonica Group]
gi|22830267|gb|AAN08650.1| hypothetical protein [Oryza sativa Japonica Group]
gi|31431615|gb|AAP53366.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|255679344|dbj|BAH94844.1| Os10g0368800 [Oryza sativa Japonica Group]
Length = 913
Score = 64.3 bits (155), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GCVP + + A ++ +++ A +L EM +G D T + +V
Sbjct: 194 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEA-ATLLNEMLLMGCAADVNTFDDVV 252
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+C + ++ EAA+++ M + C+P + +Y ++ + R+ ++A M +G
Sbjct: 253 RGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM-------LGR 305
Query: 239 MPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+P +V+ V A ++ +A E+ E + KGC Y +++ G + A
Sbjct: 306 VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 365
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ + M ++GF P + V+ G W
Sbjct: 366 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 398
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM+S G +PD + N ++ LC +Q+ EA + + + V + +Y+ +I A+
Sbjct: 438 LIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALL 497
Query: 218 TARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ DAV + KEM+L+ + ++ G++ A+ + + +++ ++E + KG
Sbjct: 498 RDGRWQDAVRLAKEMILHGCSLDVVSYNGLI----KAMCKDGNVDRSLVLLEEMAEKGIK 553
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y +++ + R A + M +G P I ++ GL +G W A +
Sbjct: 554 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG-WMHAAL 611
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T +LC + + EA +L+GM+ CVPD Y VI A+ +A +
Sbjct: 173 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 232
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM+L MG V + + +A +++ + KGC G Y +++G
Sbjct: 233 LNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 291
Query: 289 ECRE 292
R+
Sbjct: 292 RVRQ 295
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T + L+ LC + ++ A ++L+ M P++ +Y+IV+ + +D
Sbjct: 341 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 400
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++EM + QG + A + R M +A+ +I+ + +GC Y ++
Sbjct: 401 RALLEEMSAKGLTLNSQGYNGMIYALCKDGR-MDEAMGLIQEMRSQGCNPDICSYNTIIY 459
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A + E G + ++ L G W+ A
Sbjct: 460 HLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDA 505
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + R + ++ L + S GY N ++ +LC ++ EA +++ M S C P
Sbjct: 397 WDDTRALLEEMSAKGLTLNSQGY-------NGMIYALCKDGRMDEAMGLIQEMRSQGCNP 449
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ SY+ +I + + +A E M E +L G++ + AL + AV +
Sbjct: 450 DICSYNTIIYHLCNNEQMEEA-EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 508
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIP 310
+ + GC + Y +++ C++ + V+ M E+G P
Sbjct: 509 AKEMILHGCSLDVVSYNGLIKAM--CKDGNVDRSLVLLEEMAEKGIKP 554
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q + EM G D + N L+ ++C + + +L+ M+ P+
Sbjct: 496 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 555
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
SY+I+I + R+ DA+E+ K+M LN GL P
Sbjct: 556 NVSYNILISELCKERRVRDALELSKQM-LNQGLAP 589
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V D L +M + G PD T N L++ LC + + A +L+ + + PD+
Sbjct: 567 CKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDI 626
Query: 207 ESYSIVIGAMSTARKTNDAVEMMK 230
+Y+I+I R +DA ++
Sbjct: 627 ITYNILISWHCKVRLLDDAAMLLN 650
>gi|226533082|ref|NP_001141414.1| uncharacterized protein LOC100273524 [Zea mays]
gi|194704512|gb|ACF86340.1| unknown [Zea mays]
Length = 637
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 58/247 (23%), Positives = 111/247 (44%), Gaps = 28/247 (11%)
Query: 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEML---ESFI 90
LEE +R KD +P ++ F + L F + + ++++L E F
Sbjct: 293 LEEALRCVQQMKDAGSVPNVV-IFN---------TLLKGFLDANDMAAVNKILGLMEKF- 341
Query: 91 PLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
++P + Y + L+ T SL + + + + + +G P PQ+ +L+ ++ R
Sbjct: 342 GIKP---DIVTYSHQLN-TFSSLGHMAKCMHVFDKMIEAGIEPDPQVYSILAKGFV-RAQ 396
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + D+LL+M +G P+ T ++S C++ + A +V M + P+L ++
Sbjct: 397 QPEKAEDLLLQMSHLGLCPNVVTFTTVISGWCSVADMESAMRVYDKMCKSGVYPNLRTFE 456
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I S ++ A E++ +M+ G+ P+Q +A A WKAV + E +
Sbjct: 457 TPIWGYSEQKQPWKAEEVL-QMMRETGVKPKQSTYCLIADA-------WKAVGLTENINN 508
Query: 271 -KGCPIG 276
G P G
Sbjct: 509 SNGSPNG 515
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/185 (23%), Positives = 87/185 (47%), Gaps = 8/185 (4%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L +A++E + +++ + +MK G HP T N L+ + + E+ +V M
Sbjct: 143 LINAFVEAKRMGEAI-NTFWKMKHSGCHPTTSTFNTLIKGYGIVGKPEESQRVFDMMGVE 201
Query: 201 ECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
V P+L +Y+I++ A R +A ++ +M G P +A+A N E W
Sbjct: 202 GSVRPNLTTYNILVKAWCDHRNLEEAWGVVGKMQAG-GFEPDIVTYNTIASAYANNDETW 260
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQK 317
+A E+I ++ + + + +++ G CRE L A + V M + G +P + +
Sbjct: 261 RAEELIVEIQTR-VRTSERTWGIIIGGY--CREGRLEEALRCVQQMKDAGSVPNVVIFNT 317
Query: 318 VVEGL 322
+++G
Sbjct: 318 LLKGF 322
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 58/284 (20%), Positives = 120/284 (42%), Gaps = 8/284 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEML 86
+L T V+A D ++ ++ ++G + P+ ++ S + N +E++
Sbjct: 207 NLTTYNILVKAWCDHRNLEEAWGVVGKMQAGGFEPDIVTYNTIASAYANNDETWRAEELI 266
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
I R R+ + + Y + L AL +Q+ +G VP I L +L
Sbjct: 267 VE-IQTRVRTSERTWGIIIGGYCREGR--LEEALRCVQQMKDAGSVPNVVIFNTLLKGFL 323
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + +V IL M+ G PD T ++ +++ ++ + + V M A PD
Sbjct: 324 DANDMA-AVNKILGLMEKFGIKPDIVTYSHQLNTFSSLGHMAKCMHVFDKMIEAGIEPDP 382
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ YSI+ A++ A +++ +M ++GL P V + + +M A+ + +
Sbjct: 383 QVYSILAKGFVRAQQPEKAEDLLLQMS-HLGLCPNVVTFTTVISGWCSVADMESAMRVYD 441
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ + G + +E + G E ++ A + + M E G P
Sbjct: 442 KMCKSGVYPNLRTFETPIWGYSEQKQPWKAEEVLQMMRETGVKP 485
>gi|147789724|emb|CAN67401.1| hypothetical protein VITISV_025967 [Vitis vinifera]
Length = 592
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM S G P+ T + L+SSLC ++ EA VLK M E PD SY +I A+
Sbjct: 309 LVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALC 368
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+ +M M+ N G +P + AAL N +A+E+ L GCP
Sbjct: 369 KEGRLDLAIGIMDYMISN-GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 427
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ C + A V M +G P
Sbjct: 428 SSYNTMISALWSCGDRSRALGMVPAMISKGIDP 460
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 76/160 (47%), Gaps = 1/160 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ +L MK+ G+ PD T N ++ SLC +L A VL + C+P + +Y+
Sbjct: 162 QIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTVLDQLLLDNCMPTVITYT 221
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I A N+A+++++EM L GL+P + + + +A E+I L
Sbjct: 222 ILIEATIVEGGINEAMKLLEEM-LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTS 280
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
KGC Y +++ L ++ K V M RG P
Sbjct: 281 KGCEPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 320
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 79/162 (48%), Gaps = 5/162 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD N ++S C ++Q+ A +VL M + +PD+ +Y+I+IG++ RK A+ +
Sbjct: 145 PDVFAYNAVISGFCKVNQIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALTV 204
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ +++L+ MP + A + +A++++E + +G Y ++ G
Sbjct: 205 LDQLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM- 262
Query: 289 ECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
C+E ++ A + + +T +G P + ++ G+W
Sbjct: 263 -CKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKW 303
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNY 176
AL I + GC P V ++S+ W C +S A ++ M S G PD T N
Sbjct: 411 ALEIFNKLRGMGCPPNVSSYNTMISALW---SCGDRSRALGMVPAMISKGIDPDEITYNS 467
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L+S LC + EA +L M + P + SY+IV+ + R+ +DA+ M EM+
Sbjct: 468 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 524
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 59 EACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSR---PKIAYDYLLSYTLQS 112
E+ P+ F++ +S F + ++I+ ++L R ++R P I ++ +L +
Sbjct: 140 ESHTEPDVFAYNAVISGFCKVNQIEAATQVLN-----RMKARGFLPDIVTYNIMIGSLCN 194
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L LAL +L + L C+P +L A + ++++ +L EM + G PD
Sbjct: 195 RRKLGLALTVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMK-LLEEMLARGLLPDMY 253
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N ++ +C + AA+++ ++S C PD+ SY+I++ A K ++ +++ EM
Sbjct: 254 TYNAIIRGMCKEGMVERAAELITSLTSKGCEPDVISYNILLRAFLNQGKWDEGEKLVAEM 313
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ M S G PD N ++++LC +A ++ + C P++ SY+ +I A+
Sbjct: 379 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 438
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+ M+ M+ + G+ P + + + L + + +A+ +++ +E+ G
Sbjct: 439 SCGDRSRALGMVPAMI-SKGIDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 497
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
Y +V+ G + R A M E+G P ++EG+ G W+
Sbjct: 498 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI-GFAGWR 548
>gi|222612706|gb|EEE50838.1| hypothetical protein OsJ_31258 [Oryza sativa Japonica Group]
Length = 897
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 99/213 (46%), Gaps = 10/213 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L+ R GCVP + + A ++ +++ A +L EM +G D T + +V
Sbjct: 178 ALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEA-ATLLNEMLLMGCAADVNTFDDVV 236
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+C + ++ EAA+++ M + C+P + +Y ++ + R+ ++A M +G
Sbjct: 237 RGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLCRVRQADEARAM-------LGR 289
Query: 239 MPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+P +V+ V A ++ +A E+ E + KGC Y +++ G + A
Sbjct: 290 VPELNVVLFNTVIGGCLAEGKLAEATELYETMGLKGCQPDAHTYSILMHGLCKLGRIGSA 349
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ + M ++GF P + V+ G W
Sbjct: 350 VRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWD 382
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/179 (22%), Positives = 85/179 (47%), Gaps = 8/179 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM+S G +PD + N ++ LC +Q+ EA + + + V + +Y+ +I A+
Sbjct: 422 LIQEMRSQGCNPDICSYNTIIYHLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALL 481
Query: 218 TARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ DAV + KEM+L+ + ++ G++ A+ + + +++ ++E + KG
Sbjct: 482 RDGRWQDAVRLAKEMILHGCSLDVVSYNGLI----KAMCKDGNVDRSLVLLEEMAEKGIK 537
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y +++ + R A + M +G P I ++ GL +G W A +
Sbjct: 538 PNNVSYNILISELCKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMG-WMHAAL 595
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 1/124 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T +LC + + EA +L+GM+ CVPD Y VI A+ +A +
Sbjct: 157 PTTFTFGVAARALCRLGRADEALALLRGMARHGCVPDAVLYQTVIHALCDQGGVTEAATL 216
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM+L MG V + + +A +++ + KGC G Y +++G
Sbjct: 217 LNEMLL-MGCAADVNTFDDVVRGMCGLGRVREAARLVDRMMTKGCMPGVMTYGFLLQGLC 275
Query: 289 ECRE 292
R+
Sbjct: 276 RVRQ 279
Score = 44.3 bits (103), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 34/166 (20%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T + L+ LC + ++ A ++L+ M P++ +Y+IV+ + +D
Sbjct: 325 GCQPDAHTYSILMHGLCKLGRIGSAVRLLREMEKKGFAPNVVTYTIVLHSFCKNGMWDDT 384
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++EM + QG + A + R M +A+ +I+ + +GC Y ++
Sbjct: 385 RALLEEMSAKGLTLNSQGYNGMIYALCKDGR-MDEAMGLIQEMRSQGCNPDICSYNTIIY 443
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A + E G + ++ L G W+ A
Sbjct: 444 HLCNNEQMEEAEHMFENLLEEGVVANGITYNTIIHALLRDGRWQDA 489
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q + EM G D + N L+ ++C + + +L+ M+ P+
Sbjct: 480 LLRDGRWQDAVRLAKEMILHGCSLDVVSYNGLIKAMCKDGNVDRSLVLLEEMAEKGIKPN 539
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
SY+I+I + R+ DA+E+ K+M LN GL P
Sbjct: 540 NVSYNILISELCKERRVRDALELSKQM-LNQGLAP 573
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 74/168 (44%), Gaps = 12/168 (7%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + R + ++ L + S GY N ++ +LC ++ EA +++ M S C P
Sbjct: 381 WDDTRALLEEMSAKGLTLNSQGY-------NGMIYALCKDGRMDEAMGLIQEMRSQGCNP 433
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ SY+ +I + + +A E M E +L G++ + AL + AV +
Sbjct: 434 DICSYNTIIYHLCNNEQMEEA-EHMFENLLEEGVVANGITYNTIIHALLRDGRWQDAVRL 492
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIP 310
+ + GC + Y +++ C++ + V+ M E+G P
Sbjct: 493 AKEMILHGCSLDVVSYNGLIKAM--CKDGNVDRSLVLLEEMAEKGIKP 538
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 3/84 (3%)
Query: 150 CQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V D L +M + G PD T N L++ LC + + A +L+ + + PD+
Sbjct: 551 CKERRVRDALELSKQMLNQGLAPDIVTYNTLINGLCKMGWMHAALNLLEKLHNENVHPDI 610
Query: 207 ESYSIVIGAMSTARKTNDAVEMMK 230
+Y+I+I R +DA ++
Sbjct: 611 ITYNILISWHCKVRLLDDAAMLLN 634
>gi|449442579|ref|XP_004139059.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Cucumis sativus]
Length = 749
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L+EM +G P+ T N L+ +C D ++EA ++ MS +PDL S+S +IG +
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A+ +EM + G++P + + N + A++M + + +GC +
Sbjct: 408 ARNGHLYQALMHFREMERS-GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMD 466
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y + G + + + A M ERG +P ++ G G A
Sbjct: 467 VVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P A L + + +G +P L +L + + ++ EM+ G + T N
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYL-KEANLEKAFILINEMEKRGLQFNIITYN 681
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ CA ++ EA +VL+ M PD +YS +I + +A EM L
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEM-LQ 740
Query: 236 MGLMP 240
GL+P
Sbjct: 741 RGLVP 745
>gi|255562047|ref|XP_002522032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538836|gb|EEF40436.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 451
Score = 64.3 bits (155), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 46/200 (23%), Positives = 88/200 (44%), Gaps = 7/200 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
I LL++ + E S +++ +M G+ PD T N L+ ++C ++ +
Sbjct: 251 IEGLLNAGYFE------SAKEMVFKMSKEGFVPDVNTFNCLIEAICNSGEVDFCVDMYYS 304
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+ PD+ SY I+I A+S K ++A +++ + + G P G+ + +
Sbjct: 305 LRKLGFCPDINSYKILIPAVSKVGKIDEAFKLLNNSIED-GHKPFPGLYAPIIKGMCRRG 363
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ A ++ KG P Y +++ C +Y+ A ++ MTE G P +
Sbjct: 364 QFDDAFCFFGEMKVKGHPPNRPVYTMLITMCGRGGKYVEAANYLVEMTEMGLTPISRCFD 423
Query: 317 KVVEGLAGVGEWKLATVVRQ 336
V +GL G+ LA + Q
Sbjct: 424 MVTDGLKNCGKHDLAKRIEQ 443
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 32/144 (22%), Positives = 69/144 (47%), Gaps = 4/144 (2%)
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
IDQ VE V +S C +++ Y+ ++ A+ + + A +++ ++ GL P +
Sbjct: 155 IDQAVE---VFNQCNSLNCEQNVDIYNSLLFALCEVKLFHGAYALVRRLI-RKGLAPNKT 210
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ +N + +A +E + +KG +G ++++EG L + A + V M
Sbjct: 211 TYSVLVNGWCSNGKFKEAQLFLEEMSKKGFNPPVRGRDLLIEGLLNAGYFESAKEMVFKM 270
Query: 304 TERGFIPYIKVRQKVVEGLAGVGE 327
++ GF+P + ++E + GE
Sbjct: 271 SKEGFVPDVNTFNCLIEAICNSGE 294
>gi|302806733|ref|XP_002985098.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
gi|300147308|gb|EFJ13973.1| hypothetical protein SELMODRAFT_121399 [Selaginella moellendorffii]
Length = 659
Score = 64.3 bits (155), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 61/262 (23%), Positives = 115/262 (43%), Gaps = 24/262 (9%)
Query: 68 SFLSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
+ + F + R+ +V+++M ++ I S + Y+ LL L L A +L
Sbjct: 307 TLIGGFSRADRLADAYRVMEDMFKAGI-----SPDLVTYNCLLD-GLCKAGKLEEAHELL 360
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD--ILLEMK-SIGYHPDCGTCNYLVSS 180
+ + C P ++ S + C+ V D +LLEM G P+ T N ++
Sbjct: 361 EVMVEKDCAP----DVVTYSILVNGLCKLGKVDDARLLLEMMLERGCQPNLVTFNTMIDG 416
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C ++ E KVL+ M C PD+ +YS +I A + DA ++ G+ P
Sbjct: 417 FCKAGKVDEGHKVLELMKEVSCTPDVVTYSTLIDGYCKANRMQDAFAIL-------GISP 469
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + L + ++ +A E+++ + ++GCP Y +++ G + A K +
Sbjct: 470 DKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGCPPTSSHYALIIGGLCDVERGDEALKML 529
Query: 301 MGMTERGFIPYIKVRQKVVEGL 322
M+ERG P + ++ GL
Sbjct: 530 QVMSERGCEPNLYTYSILINGL 551
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/293 (20%), Positives = 124/293 (42%), Gaps = 19/293 (6%)
Query: 48 QQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104
+++ +LL EA + P+ FS+ ++ ++ + + ++LE I + P +
Sbjct: 214 EEVSKLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMI--EKKCGPDVVTYN 271
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLE 161
L + + A +L+ + C P ++ + + ++ +AD ++ +
Sbjct: 272 SLMDGFCKVSKMDEAERLLEDMVGRRCAPT----VITYTTLIGGFSRADRLADAYRVMED 327
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T N L+ LC +L EA ++L+ M +C PD+ +YSI++ + K
Sbjct: 328 MFKAGISPDLVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGK 387
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+DA ++ EM+L G P + ++ + +++E ++ C Y
Sbjct: 388 VDDA-RLLLEMMLERGCQPNLVTFNTMIDGFCKAGKVDEGHKVLELMKEVSCTPDVVTYS 446
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+++G Y A + G P ++EGL G+ + A V
Sbjct: 447 TLIDG------YCKANRMQDAFAILGISPDKASYSSMLEGLCSTGKVEEAQEV 493
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/185 (25%), Positives = 81/185 (43%), Gaps = 4/185 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ Q + + +L EM HPD N L++ LC + ++ A VLK M CVPD+
Sbjct: 103 CQCQRIDEAYQLLDEMIQKDCHPDAAVYNCLIAGLCKMGKIDAARNVLKMMLERSCVPDV 162
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I ++A ++M++M GL P + L ++ + +++E
Sbjct: 163 ITYTSLIVGCCQTNALDEARKLMEKMK-ESGLTPDTVAYNALLNGLCKQNQLEEVSKLLE 221
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ G Y VV E +Y AGK + M E+ P + +++G V
Sbjct: 222 EMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGFCKVS 281
Query: 327 EWKLA 331
+ A
Sbjct: 282 KMDEA 286
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/244 (22%), Positives = 107/244 (43%), Gaps = 9/244 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVA 156
I Y L+ Q+ + L A ++++ SG P + +A L C Q + V+
Sbjct: 163 ITYTSLIVGCCQT-NALDEARKLMEKMKESGLTP----DTVAYNALLNGLCKQNQLEEVS 217
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM G PD + N +V+ LC + EA K+L+ M +C PD+ +Y+ ++
Sbjct: 218 KLLEEMVEAGREPDTFSYNTVVACLCESGKYEEAGKILEKMIEKKCGPDVVTYNSLMDGF 277
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K ++A ++++MV + RA+R + A ++E + + G
Sbjct: 278 CKVSKMDEAERLLEDMVGRRCAPTVITYTTLIGGFSRADR-LADAYRVMEDMFKAGISPD 336
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++G + + A + + M E+ P + +V GL +G+ A ++ +
Sbjct: 337 LVTYNCLLDGLCKAGKLEEAHELLEVMVEKDCAPDVVTYSILVNGLCKLGKVDDARLLLE 396
Query: 337 RFAE 340
E
Sbjct: 397 MMLE 400
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 77/174 (44%), Gaps = 10/174 (5%)
Query: 143 SAWLERRC------QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
S+ LE C ++Q V D+ M G P ++ LC +++ EA K+L+
Sbjct: 475 SSMLEGLCSTGKVEEAQEVMDL---MTKQGCPPTSSHYALIIGGLCDVERGDEALKMLQV 531
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
MS C P+L +YSI+I + ++ DA+ ++ +++L G +P +
Sbjct: 532 MSERGCEPNLYTYSILINGLCKTKRVEDAINVL-DVMLEKGCVPDVATYTSLIDGFCKIN 590
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+M A + + + GC Y +++ G + A + + M E+G P
Sbjct: 591 KMDAAYQCFKTMRDSGCEPDKLAYNILISGFCQSGNVEKAIEVMQLMLEKGCNP 644
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/198 (19%), Positives = 84/198 (42%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
S ++ C++ + D +G PD + + ++ LC+ ++ EA +V+ M+ C
Sbjct: 446 STLIDGYCKANRMQDAF---AILGISPDKASYSSMLEGLCSTGKVEEAQEVMDLMTKQGC 502
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P Y+++IG + + ++A++M++ M G P + L + + A+
Sbjct: 503 PPTSSHYALIIGGLCDVERGDEALKMLQVMS-ERGCEPNLYTYSILINGLCKTKRVEDAI 561
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++ + KGC Y +++G + + A + M + G P ++ G
Sbjct: 562 NVLDVMLEKGCVPDVATYTSLIDGFCKINKMDAAYQCFKTMRDSGCEPDKLAYNILISGF 621
Query: 323 AGVGEWKLATVVRQRFAE 340
G + A V Q E
Sbjct: 622 CQSGNVEKAIEVMQLMLE 639
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 73/177 (41%), Gaps = 3/177 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
R S+ V +I EM + + PD T N ++ + C I L A +G C P
Sbjct: 34 FSRAGNSKMVLEIANEMLARRFSPDVITHNTILKAYCQIGDLDRALSHFRG--KMWCSPT 91
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y I+I + ++ ++A +++ EM+ P + + A L ++ A ++
Sbjct: 92 AFTYCILIHGLCQCQRIDEAYQLLDEMI-QKDCHPDAAVYNCLIAGLCKMGKIDAARNVL 150
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ + + C Y ++ GC + A K + M E G P ++ GL
Sbjct: 151 KMMLERSCVPDVITYTSLIVGCCQTNALDEARKLMEKMKESGLTPDTVAYNALLNGL 207
>gi|222636287|gb|EEE66419.1| hypothetical protein OsJ_22769 [Oryza sativa Japonica Group]
Length = 1393
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVL 194
I L + W+ C++ + + + + + + PD T N L+ LC EA L
Sbjct: 219 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 278
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M + C+PD +Y+ +I +A E++K+ V G +P Q + L A
Sbjct: 279 RRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK-GFVPDQVTYCSLINGLCA 337
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYI 312
++ +A+E+ + KG Y +V+G CL+ IL VM M E G P I
Sbjct: 338 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ--GLILHALQVMNEMAEEGCHPDI 395
Query: 313 KVRQKVVEGLAGVGEWKLATVV 334
+ V+ GL +G ATVV
Sbjct: 396 QTYNIVINGLCKMGNISDATVV 417
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 36/219 (16%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ E ++ G PD N LV LC ++ A +V+ M+ C PD+++Y+IVI +
Sbjct: 346 ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGL 405
Query: 217 STARKTNDAVEMMKEMVLNMGLMPR--------QGMV--IKVAAALRANREMW------- 259
+DA +M + ++ G +P G +K+ +AL+ MW
Sbjct: 406 CKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 464
Query: 260 ---------------KAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
K E+ E + KGC Y +++E + A K ++
Sbjct: 465 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 524
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M++ G P ++ G G+ + A ++ Q+ E
Sbjct: 525 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE 563
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 8/211 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCG 172
L AL +++R G P + ++ L C++ V ++ EM G HP+
Sbjct: 446 LDSALQLVERMWEYGIAP----DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 501
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ + C +++ EA+KV+ MS PD S++ +I A + +++
Sbjct: 502 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 561
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G + A M A ++ + + KG Y V+++G +
Sbjct: 562 E-EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 620
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A ++ M ++GFIP + +V+ L
Sbjct: 621 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 651
>gi|449476143|ref|XP_004154653.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g01110-like [Cucumis sativus]
Length = 749
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 79/175 (45%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L+EM +G P+ T N L+ +C D ++EA ++ MS +PDL S+S +IG +
Sbjct: 348 DVLIEMLQLGLTPNAATYNTLLVEICRRDNILEAQEIFDEMSRRGVLPDLVSFSSLIGVL 407
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A+ +EM + G++P + + N + A++M + + +GC +
Sbjct: 408 ARNGHLYQALMHFREMERS-GIVPDNVIYTILIDGFCRNGALSDALKMRDEMLARGCFMD 466
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y + G + + + A M ERG +P ++ G G A
Sbjct: 467 VVTYNTFLNGLCKKKMFADADMLFNEMVERGMVPDFYTFTTLIRGYCKDGNMDKA 521
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 2/125 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P A L + + +G +P L +L + + ++ EM+ G + T N
Sbjct: 623 MPKAYEYLSKMISNGIIPDSFSYNTLIDGYL-KEANLEKAFILINEMEKRGLQFNIITYN 681
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ CA ++ EA +VL+ M PD +YS +I + +A EM L
Sbjct: 682 LILNGFCAEGKMQEAEQVLRKMIEIGINPDGATYSSLINGHVSQDNMKEAFRFHDEM-LQ 740
Query: 236 MGLMP 240
GL+P
Sbjct: 741 RGLVP 745
>gi|224113413|ref|XP_002316488.1| predicted protein [Populus trichocarpa]
gi|222865528|gb|EEF02659.1| predicted protein [Populus trichocarpa]
Length = 941
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 4/208 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I RSGC+P L +E+R ++V +IL EM G PD T ++
Sbjct: 593 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAV-EILDEMALAGVSPDEHTYTTIM 651
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A+ +A + M + D+ +Y ++ A + + A+ + +EM N
Sbjct: 652 HGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQSALAVTREM--NAQK 709
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR V + A R ++W+A ++++ + ++G Y + C + + + A
Sbjct: 710 IPRNTFVYNILIDGWARRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRAT 769
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGV 325
KT+ M G P +K ++ G A
Sbjct: 770 KTMEEMEAAGVKPNVKTYTTLIHGWANA 797
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 50/105 (47%), Gaps = 2/105 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR AD++ +M G PD T +++ C ++ A K ++ M +
Sbjct: 719 ILIDGWA-RRGDIWEAADLMQQMNQEGVQPDIHTYTSFINACCKAGDMLRATKTMEEMEA 777
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
A P++++Y+ +I + A A+ +E+ L GL P + +
Sbjct: 778 AGVKPNVKTYTTLIHGWANASLPEKALSCFEELKL-AGLKPDKAV 821
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MKS+G + T + L++ + A V + + PD+ Y+ +I A
Sbjct: 495 MKSVGIKHNMKTYSMLINGFLKLKDWTNAFAVFEDVIKDGLKPDVVLYNNIIKAFCGMGN 554
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A+ M+KEM P + + EM +A+E+ + + R GC +
Sbjct: 555 MDRAIHMVKEMQKER-CRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFN 613
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G +E R+ A + + M G P ++ G A +G+
Sbjct: 614 ALVLGLVEKRKMEKAVEILDEMALAGVSPDEHTYTTIMHGYAALGD 659
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 41/222 (18%), Positives = 90/222 (40%), Gaps = 9/222 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCN 175
A A+ + ++ G P ++L + ++ C ++ EM+ P T
Sbjct: 523 AFAVFEDVIKDGLKP----DVVLYNNIIKAFCGMGNMDRAIHMVKEMQKERCRPTSRTFM 578
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ ++ A ++ M + C+P + +++ ++ + RK AVE++ EM L
Sbjct: 579 PIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKRKMEKAVEILDEMAL- 637
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + + A + KA E + +G + YE +++ C +
Sbjct: 638 AGVSPDEHTYTTIMHGYAALGDTGKAFEYFTKMRNEGLQLDVFTYEALLKACCKSGRMQS 697
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
A M + V +++G A G+ W+ A +++Q
Sbjct: 698 ALAVTREMNAQKIPRNTFVYNILIDGWARRGDIWEAADLMQQ 739
>gi|326531238|dbj|BAK04970.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 660
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 57/101 (56%), Gaps = 4/101 (3%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS V ++L +M G+ PD CN + LC ++L +A ++++ M
Sbjct: 229 SRWISALCQSNRIELVEELLADMDRFGFSPDIWACNIYIDCLCKQNRLHDALQMVEKMRG 288
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+PD+ +Y+ V+G + ++ ++AV + +EMV MGL P
Sbjct: 289 KGTIPDVVTYTTVVGCLCNNKRFSEAVGLWEEMV-KMGLKP 328
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 3/192 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+S W R I+ M++ G P T N L++ C I + +A ++ M +
Sbjct: 371 LISGFW--RAGSIDKAYTIISFMRTNGCEPGVVTYNILLNHYCTIGMMEKAENLITKMET 428
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD SY+ ++ + + + A + + + G I + A + +++
Sbjct: 429 SGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCKV-KKVK 487
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A+E+ + ++ KG Y ++ G Y LA + M + P + + ++
Sbjct: 488 SALELFKEMDYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLKAQIDPNVNLYNIML 547
Query: 320 EGLAGVGEWKLA 331
L VG+ K A
Sbjct: 548 HHLCKVGDLKRA 559
>gi|218198940|gb|EEC81367.1| hypothetical protein OsI_24568 [Oryza sativa Indica Group]
Length = 1380
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVL 194
I L + W+ C++ + + + + + + PD T N L+ LC EA L
Sbjct: 220 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 279
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M + C+PD +Y+ +I +A E++K+ V G +P Q + L A
Sbjct: 280 RRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK-GFVPDQVTYCSLINGLCA 338
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYI 312
++ +A+E+ + KG Y +V+G CL+ IL VM M E G P I
Sbjct: 339 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ--GLILHALQVMNEMAEEGCHPDI 396
Query: 313 KVRQKVVEGLAGVGEWKLATVV 334
+ V+ GL +G ATVV
Sbjct: 397 QTYNIVINGLCKMGNISDATVV 418
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 36/219 (16%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ E ++ G PD N LV LC ++ A +V+ M+ C PD+++Y+IVI +
Sbjct: 347 ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGL 406
Query: 217 STARKTNDAVEMMKEMVLNMGLMPR--------QGMV--IKVAAALRANREMW------- 259
+DA +M + ++ G +P G +K+ +AL+ MW
Sbjct: 407 CKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 465
Query: 260 ---------------KAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
K E+ E + KGC Y +++E + A K ++
Sbjct: 466 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 525
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M++ G P ++ G G+ + A ++ Q+ E
Sbjct: 526 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE 564
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 8/211 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCG 172
L AL +++R G P + ++ L C++ V ++ EM G HP+
Sbjct: 447 LDSALQLVERMWEYGIAP----DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 502
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ + C +++ EA+KV+ MS PD S++ +I A + +++
Sbjct: 503 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 562
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G + A M A ++ + + KG Y V+++G +
Sbjct: 563 E-EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 621
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A ++ M ++GFIP + +V+ L
Sbjct: 622 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 652
>gi|413933767|gb|AFW68318.1| hypothetical protein ZEAMMB73_786057 [Zea mays]
Length = 645
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 15/247 (6%)
Query: 90 IPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+P+ P AY Y L L + + ALA+L R GC P P + LE
Sbjct: 105 VPVAPN-----AYTYFPLVRALCARGRIADALAVLDDMARRGCAPTPP----MYHVTLEA 155
Query: 149 RCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG-MSSAECVP 204
C++ + +L ++ G D G CN ++ ++C + EA ++L+ + S C P
Sbjct: 156 ACRASGFRGAVGVLRDLHGRGCALDVGNCNLVLQAVCDQGPVDEAVRLLRDLLPSFGCEP 215
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ SY+ V+ + AR+ ++M+EMV G P + L N + E+
Sbjct: 216 DVVSYNAVLRGLCMARRWGHVQDLMEEMVA-AGCPPNIVTFSTLIGHLCRNGLFERVHEV 274
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+ GC + Y +++G + +A + M G P + +++GL
Sbjct: 275 HAQMAEHGCAPDVRMYATIIDGVCKEERLEVARGILNRMPSYGLSPNVVCYNTLLKGLCS 334
Query: 325 VGEWKLA 331
W+ A
Sbjct: 335 ADRWEEA 341
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 82/180 (45%), Gaps = 4/180 (2%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ+ V ++L +M G PD T +++ C + EA +L+ M++ C P+
Sbjct: 368 CQNGLVDRVIEVLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLRSMAACGCRPNT 427
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+IV+ + +A + DA E+M +M+ G P + L + +A+E+++
Sbjct: 428 VSYTIVLKGLCSAERWVDAEELMSQMI-QQGCPPNPVTFNTLINFLCKKGLVEQAIELLK 486
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ GC Y V++G + A + + M ++G P + + L+G G
Sbjct: 487 QMLVNGCSPDLISYSTVIDGLGKAGNTDEALELLNVMVKKGMSPNTIIYSSIASALSGEG 546
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 71/165 (43%), Gaps = 36/165 (21%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ +M G P+ T N L++ LC + +A ++LK M C PDL SYS VI +
Sbjct: 448 ELMSQMIQQGCPPNPVTFNTLINFLCKKGLVEQAIELLKQMLVNGCSPDLISYSTVIDGL 507
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANR---------------- 256
A T++A+E++ MV G+ P + +A+AL R N+
Sbjct: 508 GKAGNTDEALELLNVMV-KKGMSPNTIIYSSIASALSGEGRINKVIQMFENIQDTTVRSD 566
Query: 257 ---------------EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E +A+E + ++ GC Y +++ G
Sbjct: 567 AVLYNAVISSLCKRGETDRAIEFLAYMVSSGCVPNESTYTILIRG 611
>gi|225453062|ref|XP_002266822.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Vitis vinifera]
Length = 582
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 70/153 (45%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM S G P+ T + L+SSLC ++ EA VLK M E PD SY +I A+
Sbjct: 299 LVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALC 358
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+ +M M+ N G +P + AAL N +A+E+ L GCP
Sbjct: 359 KEGRLDLAIGIMDYMISN-GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNV 417
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y ++ C + A V M +G P
Sbjct: 418 SSYNTMISALWSCGDRSRALGMVPAMISKGVDP 450
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 76/158 (48%), Gaps = 1/158 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ +L MK+ G+ PD T N ++ SLC +L A KVL + C+P + +Y+I+
Sbjct: 154 EAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTIL 213
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A N+A+++++EM L GL+P + + + +A E+I L KG
Sbjct: 214 IEATIVEGGINEAMKLLEEM-LARGLLPDMYTYNAIIRGMCKEGMVERAAELITSLTSKG 272
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
C Y +++ L ++ K V M RG P
Sbjct: 273 CKPDVISYNILLRAFLNQGKWDEGEKLVAEMFSRGCEP 310
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 90/180 (50%), Gaps = 12/180 (6%)
Query: 59 EACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSR---PKIAYDYLLSYTLQS 112
E+ P+ F++ +S F + +RI+ ++L R ++R P I ++ +L +
Sbjct: 130 ESHTEPDVFAYNAVISGFCKVNRIEAATQVLN-----RMKARGFLPDIVTYNIMIGSLCN 184
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L LAL +L + L C+P +L A + ++++ +L EM + G PD
Sbjct: 185 RRKLGLALKVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMK-LLEEMLARGLLPDMY 243
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N ++ +C + AA+++ ++S C PD+ SY+I++ A K ++ +++ EM
Sbjct: 244 TYNAIIRGMCKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKWDEGEKLVAEM 303
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/287 (19%), Positives = 124/287 (43%), Gaps = 43/287 (14%)
Query: 60 ACQNPNPFSFLS--NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLP 117
C+NPNP + N P+ + + +RP +L SY + H +
Sbjct: 32 TCRNPNPNDGFNSRNAPK--------------VGVSAEARPA----HLQSYDFRETHLMK 73
Query: 118 L------------ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMK 163
L +L L+ + G P ++L + ++ +++ A ++E+
Sbjct: 74 LLNRSCKAGKFNESLYFLECLVNKGYTP----DVILCTKLIKGFFNFKNIEKASRVMEIL 129
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
PD N ++S C ++++ A +VL M + +PD+ +Y+I+IG++ RK
Sbjct: 130 ESHTEPDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLG 189
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
A++++ +++L+ MP + A + +A++++E + +G Y +
Sbjct: 190 LALKVLDQLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAI 248
Query: 284 VEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ G C+E ++ A + + +T +G P + ++ G+W
Sbjct: 249 IRGM--CKEGMVERAAELITSLTSKGCKPDVISYNILLRAFLNQGKW 293
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 57/117 (48%), Gaps = 5/117 (4%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNY 176
AL I + GC P V ++S+ W C +S A ++ M S G PD T N
Sbjct: 401 ALEIFNKLRGMGCPPNVSSYNTMISALW---SCGDRSRALGMVPAMISKGVDPDEITYNS 457
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L+S LC + EA +L M + P + SY+IV+ + R+ +DA+ M EM+
Sbjct: 458 LISCLCRDGLVEEAIGLLDDMEQSGFRPTVISYNIVLLGLCKVRRIDDAIGMFAEMI 514
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 79/172 (45%), Gaps = 2/172 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ M S G PD N ++++LC +A ++ + C P++ SY+ +I A+
Sbjct: 369 IMDYMISNGCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCPPNVSSYNTMISALW 428
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+ M+ M+ + G+ P + + + L + + +A+ +++ +E+ G
Sbjct: 429 SCGDRSRALGMVPAMI-SKGVDPDEITYNSLISCLCRDGLVEEAIGLLDDMEQSGFRPTV 487
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
Y +V+ G + R A M E+G P ++EG+ G W+
Sbjct: 488 ISYNIVLLGLCKVRRIDDAIGMFAEMIEKGCRPNETTYILLIEGI-GFAGWR 538
>gi|115446773|ref|NP_001047166.1| Os02g0565400 [Oryza sativa Japonica Group]
gi|113536697|dbj|BAF09080.1| Os02g0565400, partial [Oryza sativa Japonica Group]
Length = 353
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/232 (26%), Positives = 109/232 (46%), Gaps = 3/232 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ ++ L+S+ + P AL +L++ + GC P L A+ +++ +++A +
Sbjct: 98 VTFNMLISFLCRKGLVEP-ALEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLD 156
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
L M S G +PD + N L+++LC ++ A ++L + C P L SY+ VI ++ A
Sbjct: 157 L-MVSRGCYPDIVSYNTLLTALCRSGEVDVAVELLHQLKDKGCAPVLISYNTVIDGLTKA 215
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
KT +A+E++ EMV + GL P +AA L + A+ ++ G
Sbjct: 216 GKTKEALELLNEMV-SKGLQPDIITYSTIAAGLCREDRIEDAIRAFGKVQDMGIRPNTVL 274
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + RE A M G +P ++EGLA G K A
Sbjct: 275 YNAIILGLCKRRETHSAIDLFAYMIGNGCMPNESTYTILIEGLAYEGLIKEA 326
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 91/218 (41%), Gaps = 34/218 (15%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+R + +L EM+ G PD T N +V+ +C ++ +A + LK + S C P+
Sbjct: 4 KRSGYKQAMKLLDEMRDKGCTPDIVTYNVVVNGICQEGRVDDAIEFLKNLPSYGCEPNTV 63
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM----------VLNM--GLMPRQGMVIKVAAALR-- 253
SY+IV+ + TA + DA E+M EM NM + R+G+V L
Sbjct: 64 SYNIVLKGLCTAERWEDAEELMGEMGQKGCPPNVVTFNMLISFLCRKGLVEPALEVLEQI 123
Query: 254 --------------------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
++M KA+ ++ + +GC Y ++ E
Sbjct: 124 PKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFLDLMVSRGCYPDIVSYNTLLTALCRSGEV 183
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+A + + + ++G P + V++GL G+ K A
Sbjct: 184 DVAVELLHQLKDKGCAPVLISYNTVIDGLTKAGKTKEA 221
>gi|224145304|ref|XP_002336216.1| predicted protein [Populus trichocarpa]
gi|222832672|gb|EEE71149.1| predicted protein [Populus trichocarpa]
Length = 616
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 40/153 (26%), Positives = 73/153 (47%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ M + G PD T + L+ C L +A ++ + M S P++ Y+I+I AM
Sbjct: 458 DLFKNMLTNGNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMYNILIDAM 517
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+R +A ++ E+ + GL P + + L + +A+E +E GCP
Sbjct: 518 CKSRNLKEARKLFSELFVQ-GLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEEDGCPPN 576
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L+ ++ A + + M E+GF+
Sbjct: 577 EFSYNVIIRGFLQHKDESRAVQLIGEMREKGFV 609
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 92/214 (42%), Gaps = 4/214 (1%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A + ++ +GC P V ++ S +RR DI MK+ G P+ T N L
Sbjct: 246 AAGLFRKMGEAGCQPDVVTYSTIIDSLCKDRRVNE--ALDIFSYMKAKGISPNIFTYNSL 303
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ LC + EA+ +L M S +P++ ++S++I +A ++K M MG
Sbjct: 304 IQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMT-EMG 362
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + E+ +A ++ + + KGC Y +++ G + + A
Sbjct: 363 VEPNVVTYSSLMNGYSLQAEVVEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAK 422
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M +G P I +++GL +G + A
Sbjct: 423 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 456
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 69/137 (50%), Gaps = 16/137 (11%)
Query: 107 SYTLQ-------SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ----SQSV 155
+YTL L + L ++L + ++ G Q+ ++ + + C+ Q+V
Sbjct: 157 TYTLHMLINCFFQLQRVDLGFSVLAKIIKLGL----QLTIVTFNTLINGLCKVGKFGQAV 212
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
++ +M + GY PD T +++ LC I + V AA + + M A C PD+ +YS +I +
Sbjct: 213 -ELFDDMVARGYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDS 271
Query: 216 MSTARKTNDAVEMMKEM 232
+ R+ N+A+++ M
Sbjct: 272 LCKDRRVNEALDIFSYM 288
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 36/178 (20%), Positives = 71/178 (39%), Gaps = 27/178 (15%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M + G PD + N L++ C ++ EA ++ M PD+ SY+ +I + +
Sbjct: 393 MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 452
Query: 222 TNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRANREMWKAVEMIEFL 268
+A ++ K M+ N G +P +QG + K RA + + M+
Sbjct: 453 LREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVM-- 509
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++++ + R A K + +G P +++ ++ GL G
Sbjct: 510 -----------YNILIDAMCKSRNLKEARKLFSELFVQGLQPNVQIYTTIINGLCKEG 556
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 46/224 (20%), Positives = 83/224 (37%), Gaps = 3/224 (1%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S + ALA L P + Q LLS A ++ R +V + +M+ G PD
Sbjct: 98 SFRNIDDALAYFNHMLHRKPRPCIIQFNKLLS-AIVKMRHYHDAVISLSKQMELAGLSPD 156
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L++ + ++ VL + + +++ +I + K AVE+
Sbjct: 157 TYTLHMLINCFFQLQRVDLGFSVLAKIIKLGLQLTIVTFNTLINGLCKVGKFGQAVELFD 216
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+MV G P + L E A + + GC Y +++ +
Sbjct: 217 DMVAR-GYQPDVHTYTTIINGLCKIGETVAAAGLFRKMGEAGCQPDVVTYSTIIDSLCKD 275
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
R A M +G P I +++GL W+ A+ +
Sbjct: 276 RRVNEALDIFSYMKAKGISPNIFTYNSLIQGLCNFSRWREASAM 319
>gi|218200911|gb|EEC83338.1| hypothetical protein OsI_28730 [Oryza sativa Indica Group]
gi|258644730|dbj|BAI39975.1| putative fertility restorer homologue [Oryza sativa Indica Group]
Length = 918
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 9/244 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y+ L++ +++ + A +L R+GC P ++ + ++ C +
Sbjct: 391 VTYNALINILVEN-RRIKYAFVVLNLMGRNGCSP----NIVTYNEMIKGYCILGDPKKAM 445
Query: 160 LEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
L M ++ G+ + T N ++ C A ++L M C PD SY+ +I
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K A + EMV + GL P + + + ++ A ++E ++R GC
Sbjct: 506 CKISKMESAFGLFNEMV-DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Q Y V++ G + + A + M E G P + +++GL G LA +
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624
Query: 337 RFAE 340
+ E
Sbjct: 625 KMIE 628
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 79/186 (42%), Gaps = 12/186 (6%)
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSS 180
R L G P LL+ +A + C+ +VAD MK + PD T ++
Sbjct: 204 HRMLSEGVQP----NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C L A +V M+ C P+ +YS +I + + + N+A ++++EM+L+ G++P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
AL A + ++ KGC Y ++ G C IL K
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGL--CVSGIL--KVA 374
Query: 301 MGMTER 306
+G+ R
Sbjct: 375 IGLFHR 380
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 8/217 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
H L AL + + + GC P + S + C S V D++ EM G P
Sbjct: 264 HDLDSALQVFNQMAKEGCEP----NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
TC + +LC + +A ++ M + C P++ +Y+ +I + + A+ +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGILKVAIGLFH 379
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M + G+ P + L NR + A ++ + R GC Y +++G
Sbjct: 380 RMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + M +RG + +++G G
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A ++L+ RSGC P Q +L L ++ ++ M G P+ T
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHG-LTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ LC A ++ M C+P+L +YS +I A+ K +A + E+ +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P + +K+ A + ++ A + + + GC Y V+++G EY+L
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--EYLL 721
Query: 296 AGKTVMGMTE 305
A + + + +
Sbjct: 722 ADQRLAALPD 731
>gi|115470153|ref|NP_001058675.1| Os07g0101200 [Oryza sativa Japonica Group]
gi|50508922|dbj|BAD31827.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|113610211|dbj|BAF20589.1| Os07g0101200 [Oryza sativa Japonica Group]
Length = 738
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/202 (27%), Positives = 90/202 (44%), Gaps = 7/202 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVL 194
I L + W+ C++ + + + + + + PD T N L+ LC EA L
Sbjct: 222 INLFTYNIWIRGLCEAGRLPEAVRLVDGMRAYAVPDVVTYNTLIRGLCKKSMPQEAMHYL 281
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M + C+PD +Y+ +I +A E++K+ V G +P Q + L A
Sbjct: 282 RRMMNQGCLPDDFTYNTIIDGYCKISMVQEATELLKDAVFK-GFVPDQVTYCSLINGLCA 340
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYI 312
++ +A+E+ + KG Y +V+G CL+ IL VM M E G P I
Sbjct: 341 EGDVERALELFNEAQAKGIKPDIVVYNSLVKGLCLQ--GLILHALQVMNEMAEEGCHPDI 398
Query: 313 KVRQKVVEGLAGVGEWKLATVV 334
+ V+ GL +G ATVV
Sbjct: 399 QTYNIVINGLCKMGNISDATVV 420
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 89/219 (40%), Gaps = 36/219 (16%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ E ++ G PD N LV LC ++ A +V+ M+ C PD+++Y+IVI +
Sbjct: 349 ELFNEAQAKGIKPDIVVYNSLVKGLCLQGLILHALQVMNEMAEEGCHPDIQTYNIVINGL 408
Query: 217 STARKTNDAVEMMKEMVLNMGLMPR--------QGMV--IKVAAALRANREMW------- 259
+DA +M + ++ G +P G +K+ +AL+ MW
Sbjct: 409 CKMGNISDATVVMNDAIMK-GYLPDVFTFNTLIDGYCKRLKLDSALQLVERMWEYGIAPD 467
Query: 260 ---------------KAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
K E+ E + KGC Y +++E + A K ++
Sbjct: 468 TITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPITYNILIENFCRSNKMEEASKVIV 527
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M++ G P ++ G G+ + A ++ Q+ E
Sbjct: 528 KMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKLEE 566
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 87/211 (41%), Gaps = 8/211 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCG 172
L AL +++R G P + ++ L C++ V ++ EM G HP+
Sbjct: 449 LDSALQLVERMWEYGIAP----DTITYNSVLNGLCKAGKVNEVNETFQEMILKGCHPNPI 504
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ + C +++ EA+KV+ MS PD S++ +I A + +++
Sbjct: 505 TYNILIENFCRSNKMEEASKVIVKMSQEGLHPDAVSFNTLIYGFCRNGDLEGAYLLFQKL 564
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G + A M A ++ + + KG Y V+++G +
Sbjct: 565 E-EKGYSATADTFNTLIGAFSGKLNMHMAEKIFDEMLSKGHRADSYTYRVLIDGSCKTAN 623
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A ++ M ++GFIP + +V+ L
Sbjct: 624 VDRAYMHLVEMIKKGFIPSMSTFGRVINSLT 654
>gi|50508175|dbj|BAD30981.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|50508218|dbj|BAD31653.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
Length = 918
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 100/244 (40%), Gaps = 9/244 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y+ L++ +++ + A +L R+GC P ++ + ++ C +
Sbjct: 391 VTYNALINILVEN-RRIKYAFVVLNLMGRNGCSP----NIVTYNEMIKGYCILGDPKKAM 445
Query: 160 LEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
L M ++ G+ + T N ++ C A ++L M C PD SY+ +I
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K A + EMV + GL P + + + ++ A ++E ++R GC
Sbjct: 506 CKISKMESAFGLFNEMV-DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Q Y V++ G + + A + M E G P + +++GL G LA +
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLALEMFN 624
Query: 337 RFAE 340
+ E
Sbjct: 625 KMIE 628
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSS 180
R L G P LL+ +A + C+ +VAD MK + PD T ++
Sbjct: 204 HRMLSEGVQP----NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C L A +V M+ C P+ +YS +I + + + N+A ++++EM+L+ G++P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
AL A + ++ KGC Y ++ G
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 8/217 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
H L AL + + + GC P + S + C S V D++ EM G P
Sbjct: 264 HDLDSALQVFNQMAKEGCEP----NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
TC + +LC + +A ++ M + C P++ +Y+ +I + + A+ +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M + G+ P + L NR + A ++ + R GC Y +++G
Sbjct: 380 RMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + M +RG + +++G G
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A ++L+ RSGC P Q +L L ++ ++ M G P+ T
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHG-LTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ LC A ++ M C+P+L +YS +I A+ K +A + E+ +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P + +K+ A + ++ A + + + GC Y V+++G EY+L
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--EYLL 721
Query: 296 AGKTVMGMTE 305
A + + + +
Sbjct: 722 ADQRLAALPD 731
>gi|34015232|gb|AAQ56425.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015270|gb|AAQ56462.1| putative fertility restorer [Oryza sativa Japonica Group]
Length = 1007
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 97/235 (41%), Gaps = 9/235 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y+ L++ +++ + A +L R+GC P ++ + ++ C +
Sbjct: 391 VTYNALINILVEN-RRIKYAFVVLNLMGRNGCSP----NIVTYNEMIKGYCILGDPKKAM 445
Query: 160 LEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
L M ++ G+ + T N ++ C A ++L M C PD SY+ +I
Sbjct: 446 LVMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGF 505
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K A + EMV + GL P + + + ++ A ++E ++R GC
Sbjct: 506 CKISKMESAFGLFNEMV-DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPN 564
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Q Y V++ G + + A + M E G P + +++GL G LA
Sbjct: 565 VQTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 619
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 8/166 (4%)
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSS 180
R L G P LL+ +A + C+ +VAD MK + PD T ++
Sbjct: 204 HRMLSEGVQP----NLLIYNAVINALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILG 259
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C L A +V M+ C P+ +YS +I + + + N+A ++++EM+L+ G++P
Sbjct: 260 HCRKHDLDSALQVFNQMAKEGCEPNTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILP 318
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
AL A + ++ KGC Y ++ G
Sbjct: 319 TAHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISG 364
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 85/217 (39%), Gaps = 8/217 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
H L AL + + + GC P + S + C S V D++ EM G P
Sbjct: 264 HDLDSALQVFNQMAKEGCEP----NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 319
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
TC + +LC + +A ++ M + C P++ +Y+ +I + + A+ +
Sbjct: 320 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 379
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M + G+ P + L NR + A ++ + R GC Y +++G
Sbjct: 380 RMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGCSPNIVTYNEMIKGYCIL 438
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + M +RG + +++G G
Sbjct: 439 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 475
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 84/190 (44%), Gaps = 4/190 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A ++L+ RSGC P Q +L L ++ ++ M G P+ T
Sbjct: 546 LDTATSLLEHMKRSGCRPNVQTYNVLIHG-LTKQNNFSGAEELCKVMIEEGIFPNVVTYT 604
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ LC A ++ M C+P+L +YS +I A+ K +A + E+ +
Sbjct: 605 AMIDGLCKNGSTSLALEMFNKMIEQGCLPNLLTYSSLIRALGQEGKVEEAENLFAELERH 664
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P + +K+ A + ++ A + + + GC Y V+++G EY+L
Sbjct: 665 -GLIPDEITYVKMIEAYIMSGKVEHAFNFLGRMIKAGCQPTLWTYGVLIKGLKN--EYLL 721
Query: 296 AGKTVMGMTE 305
A + + + +
Sbjct: 722 ADQRLAALPD 731
>gi|242054609|ref|XP_002456450.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
gi|241928425|gb|EES01570.1| hypothetical protein SORBIDRAFT_03g036550 [Sorghum bicolor]
Length = 669
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/150 (28%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IR +ER Q +L +M G + CN +++S+C ++ +A K+L
Sbjct: 290 IRFFCRGGMVERAIQ------VLEQMTEHGCATNTTLCNIVINSICKQGRVDDAFKLLND 343
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C PD SY+ V+ + A + +DA E++ EMV N P + L
Sbjct: 344 MGSYGCNPDTISYTTVLKGLCRAERWDDAKELLNEMVRN-NCPPNEVTFNTFICILCQKG 402
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ +A+ +IE + GC +G Y +V G
Sbjct: 403 LIEQAIMLIEQMSEHGCTVGVVTYNALVNG 432
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/207 (24%), Positives = 99/207 (47%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
ID LE F +P +P + I Y LL+ L + L A ++ LR C P
Sbjct: 439 IDSALELFRSMPCKPNT---ITYTTLLT-GLCNAERLDGAAELVAEMLRGDCPPNVVTFN 494
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S + ++ +++ +++ +M G P+ T N L+ + +A ++L G+ S
Sbjct: 495 VLVSFFCQKGFLEEAI-ELVEQMMEHGCTPNLITYNTLLDGITKDCSSEDALELLHGLVS 553
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ ++S +IG +S + +AV++ +V ++G+ P+ + K+ L E+
Sbjct: 554 KGVSPDVITFSSIIGILSKEDRIEEAVQLF-HVVQDIGMRPKAVVYNKILLGLCKRCEID 612
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
A++ ++ GC Y +++EG
Sbjct: 613 NAIDFFAYMVSNGCMPNESTYIILIEG 639
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 97/217 (44%), Gaps = 10/217 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS----QSVADILLEMKSIGYHPDCGTC 174
AL++L LR GC P ++ + LE C++ Q++A +L EM++ G P+ T
Sbjct: 162 ALSLLDDMLRRGCQP----NVVTYTVLLEAMCRNSGFEQAMA-VLDEMRAKGCTPNIVTY 216
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N +++ +C ++ +A ++L + S PD SY+ ++ + +++ +D E+ EM +
Sbjct: 217 NVIINGMCREGRVDDARELLNRLPSYGFQPDTVSYTTLLKGLCASKRWDDVEELFAEM-M 275
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
MP + + + +A++++E + GC +V+ +
Sbjct: 276 EKNCMPNEVTFDMLIRFFCRGGMVERAIQVLEQMTEHGCATNTTLCNIVINSICKQGRVD 335
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A K + M G P V++GL W A
Sbjct: 336 DAFKLLNDMGSYGCNPDTISYTTVLKGLCRAERWDDA 372
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 3/180 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
A+++ EM P+ T N LVS C L EA ++++ M C P+L +Y+ +
Sbjct: 472 DGAAELVAEMLRGDCPPNVVTFNVLVSFFCQKGFLEEAIELVEQMMEHGCTPNLITYNTL 531
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ ++ + DA+E++ +V + G+ P + L + +AV++ ++ G
Sbjct: 532 LDGITKDCSSEDALELLHGLV-SKGVSPDVITFSSIIGILSKEDRIEEAVQLFHVVQDIG 590
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G C C E A M G +P ++EGLA G K A
Sbjct: 591 MRPKAVVYNKILLGLCKRC-EIDNAIDFFAYMVSNGCMPNESTYIILIEGLAHEGLLKEA 649
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 80/210 (38%), Gaps = 40/210 (19%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG----------------------------- 196
G PD C L+ +LC + +AA+VL+
Sbjct: 71 GEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAEGSGSPVDVFAYNTLVAGYCRYGHLDAA 130
Query: 197 ---MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
+ S PD +Y+ +I + + DA+ ++ +M L G P + A+
Sbjct: 131 RRLIGSMPVAPDAYTYTPLIRVLCDRGRVADALSLLDDM-LRRGCQPNVVTYTVLLEAMC 189
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPY 311
N +A+ +++ + KGC Y V++ G CRE + A + + + GF P
Sbjct: 190 RNSGFEQAMAVLDEMRAKGCTPNIVTYNVIING--MCREGRVDDARELLNRLPSYGFQPD 247
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+++GL W V + FAE+
Sbjct: 248 TVSYTTLLKGLCASKRWD---DVEELFAEM 274
>gi|357148528|ref|XP_003574800.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Brachypodium distachyon]
Length = 464
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/171 (25%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T N L +LC + A +L SS PD+ +Y +++ A++ A + +A
Sbjct: 287 GVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCPDISTYKVMLPAVAKAGQIEEA 346
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ V + G P + + AL A ++ KG P Y ++V+
Sbjct: 347 FRLFYAAVED-GHRPFPSLYAAIVKALCKAGRFGDAFAFFGDMKSKGHPPNRPVYVMLVK 405
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
C+ ++ A ++ M+E GF P + VV+GL +G+ LA + Q
Sbjct: 406 MCVRGGRFLDAANYLVEMSEAGFAPRVPTFNAVVDGLRHLGKHDLAQRMEQ 456
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ + R GC PQ + + A L+ C + + A +L M G PD T +
Sbjct: 171 AVEVFNRLPHFGC---PQTTEVYN-ALLDALCSNGNFAGAYKLLRRMARKGVAPDRATFS 226
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND----AVEMMKE 231
LV + CA +L EA L M+S P + +++ + A + + AV KE
Sbjct: 227 TLVDAWCASGKLREAQAFLDDMASRGFRPPVRGRDLLVDGLVRAGRLEEAKAFAVRFTKE 286
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLEC 290
G++P +A AL ++ AV ++ +G CP Y+V++ +
Sbjct: 287 -----GVLPDVATFNSLAQALCDAGDVKFAVGLLADASSRGLCP-DISTYKVMLPAVAKA 340
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ A + E G P+ + +V+ L G + A F ++KS
Sbjct: 341 GQIEEAFRLFYAAVEDGHRPFPSLYAAIVKALCKAGRFGDAFAF---FGDMKS 390
>gi|255572834|ref|XP_002527349.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533268|gb|EEF35021.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 443
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 59/219 (26%), Positives = 100/219 (45%), Gaps = 8/219 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L A+ +L++ + GC P L + L C+ + + + L +M S G +PD
Sbjct: 205 LGRAIDVLEKMPKHGCTP----NSLSYNPLLHGFCKEKKMERAIEYLGKMTSRGCYPDIV 260
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+++LC ++ A ++L +SS C P L +Y+ VI +S KT+ A +++ EM
Sbjct: 261 TYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAAKLLDEM 320
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
GL P + L ++ +A++ LE G Y ++ G + R+
Sbjct: 321 RAK-GLKPDIITYSSLVGGLSREGKVDEAIKFFHDLEVLGVKPNAITYNAIMLGLCKARK 379
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M +RG P ++EGLA G K A
Sbjct: 380 TDRAIDFLAYMVQRGCKPTEASYTILIEGLAYEGLAKEA 418
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/170 (27%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G P T N L++ LC L A VL+ M C P+ SY+ ++
Sbjct: 176 LLADMVRRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLHGFC 235
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K A+E + +M + G P + AL + ++ AVE++ L KGC
Sbjct: 236 KEKKMERAIEYLGKMT-SRGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVL 294
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y V++G + + A K + M +G P I +V GL+ G+
Sbjct: 295 ITYNTVIDGLSKVGKTDQAAKLLDEMRAKGLKPDIITYSSLVGGLSREGK 344
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+++ I+ ++ G PD T N L+S +C+ + ++A K+L M C P + +++
Sbjct: 134 KTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDAEKLLADMVRRGCSPSVVTFN 193
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I + A++++++M G P + ++M +A+E + +
Sbjct: 194 ILINFLCRKGLLGRAIDVLEKMP-KHGCTPNSLSYNPLLHGFCKEKKMERAIEYLGKMTS 252
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+GC Y ++ + + A + + ++ +G P + V++GL+ VG+
Sbjct: 253 RGCYPDIVTYNTLLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQ 312
Query: 331 A 331
A
Sbjct: 313 A 313
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD C L+ C I + +A ++++ + + VPD+ +Y+++I M + + DA
Sbjct: 114 GDIPDIIPCTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGMCSTGRWMDA 173
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++ +MV G P + L + +A++++E + + GC Y ++
Sbjct: 174 EKLLADMV-RRGCSPSVVTFNILINFLCRKGLLGRAIDVLEKMPKHGCTPNSLSYNPLLH 232
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G + ++ A + + MT RG P I ++ L G+ A
Sbjct: 233 GFCKEKKMERAIEYLGKMTSRGCYPDIVTYNTLLTALCKDGKVDAA 278
>gi|302781560|ref|XP_002972554.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
gi|300160021|gb|EFJ26640.1| hypothetical protein SELMODRAFT_97435 [Selaginella moellendorffii]
Length = 581
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 16/183 (8%)
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLR---PRSRPKIAYDYLLSYTLQSL---H 114
C NP+ + +N I+ + PL+ RS + DY + LQSL
Sbjct: 2 CINPHHHTAAANLLVPITTATINTQRVNLCPLKFFFVRSSSRSVADY--NIVLQSLCRAG 59
Query: 115 PLPLALAILQRTL-RSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
AL I + + R G P ++ + + C+S + ++ E+ G+HPD
Sbjct: 60 ETARALEIFRGEMARDGVAPT----IVTYNTIINGLCKSNELGAGMELFEELVKRGHHPD 115
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N L+ SLC L EA ++ GMSS CVP++ +YS++I + + ++A E+++
Sbjct: 116 VVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSVLINGLCKVGRIDEARELIQ 175
Query: 231 EMV 233
EM
Sbjct: 176 EMT 178
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 59/111 (53%), Gaps = 2/111 (1%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQ-SQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
L R+LR G + V + S+ ++ C+ Q+ +M + GY P+ T N LV+ L
Sbjct: 210 LMRSLRDGSLRVSPDTVTFST-LIDGLCKCGQTDEACNDDMIAGGYVPNVVTYNALVNGL 268
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C D++ A +++ M PD+ +YS+++ A A + ++A+E++ M
Sbjct: 269 CKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGM 319
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 49/82 (59%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ DIL M ++G P+ T N LV LC ++ E + L+ M S+ CVP+ +Y
Sbjct: 413 QVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSGRIEEPCEFLEEMVSSGCVPESMTYG 472
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
++ A+ A +T+DA++++ ++
Sbjct: 473 SLVYALCRASRTDDALQLVSKL 494
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 60/136 (44%), Gaps = 7/136 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ L S +E C+ L EM S G P+ T LV +LC + +A +++
Sbjct: 440 VHGLCKSGRIEEPCE------FLEEMVSSGCVPESMTYGSLVYALCRASRTDDALQLVSK 493
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+ S PD +Y+I++ + + KT A+ +++EMV G P L +
Sbjct: 494 LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMV-GKGHQPDSFTFAACFGGLHRSG 552
Query: 257 EMWKAVEMIEFLERKG 272
+ +E++ + KG
Sbjct: 553 NLAGTMELLRVVLAKG 568
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 59/129 (45%), Gaps = 3/129 (2%)
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
SS+ V D Y+IV+ ++ A +T A+E+ + + G+ P + L + E
Sbjct: 40 SSSRSVAD---YNIVLQSLCRAGETARALEIFRGEMARDGVAPTIVTYNTIINGLCKSNE 96
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +E+ E L ++G Y +++ + + A + GM+ RG +P +
Sbjct: 97 LGAGMELFEELVKRGHHPDVVTYNTLIDSLCKAGDLEEARRLHGGMSSRGCVPNVVTYSV 156
Query: 318 VVEGLAGVG 326
++ GL VG
Sbjct: 157 LINGLCKVG 165
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 61/127 (48%), Gaps = 3/127 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + PD T L+ LC Q+ A +L M + P++ +Y++++ + +
Sbjct: 388 EMVAKNMQPDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNVLVHGLCKSG 447
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQG 279
+ + E ++EMV + G +P + AL RA+R A++++ L+ G
Sbjct: 448 RIEEPCEFLEEMV-SSGCVPESMTYGSLVYALCRASR-TDDALQLVSKLKSFGWDPDTVT 505
Query: 280 YEVVVEG 286
Y ++V+G
Sbjct: 506 YNILVDG 512
>gi|356557957|ref|XP_003547276.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
repeat-containing protein At5g43820-like [Glycine max]
Length = 505
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 50/195 (25%), Positives = 90/195 (46%), Gaps = 13/195 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +IL MK + PD T N ++ + ++ E K M S C P+
Sbjct: 259 LGREGRMDEAVEILCGMKEMNCQPDTETYNAVIFNFVSVGDFEECIKYYNRMLSDNCEPN 318
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
L++Y+ +I ARK DA+ M EM L G++P G + L + + A+ +
Sbjct: 319 LDTYARMINRFLRARKVADALLMFDEM-LRRGVVPSTGTITTFIKRLCSYGPPYAALMIY 377
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGK--TVMG----MTERGFIPYIKVRQKVV 319
+ + GC I + Y++++ + GK T++ M E G+ ++V + ++
Sbjct: 378 KKARKLGCVISMEAYKILL------MRLSMVGKCGTLLSIWEEMQECGYSSDLEVYECII 431
Query: 320 EGLAGVGEWKLATVV 334
GL VG+ + A +V
Sbjct: 432 SGLCNVGQLENAVLV 446
>gi|302769784|ref|XP_002968311.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
gi|300163955|gb|EFJ30565.1| hypothetical protein SELMODRAFT_89033 [Selaginella moellendorffii]
Length = 600
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 12/228 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y L+S + L L A +L++ + +GC P ++ +A + + Q V++ L
Sbjct: 223 ITYSTLISGLCRELRRLESARQLLEKMVLNGCKP----DIVSYNALIHGLAREQGVSEAL 278
Query: 160 LEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
S+ GY P+ T N L+ L D++ EA ++ G+ PD +Y++ I +
Sbjct: 279 KLFGSVLRQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLVKHGLEPDAITYTVFIDGL 338
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + DA+ M+K+M G +P V L + + +A ++ +E KGC
Sbjct: 339 CKAGRVEDALLMLKDMD-EKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPN 397
Query: 277 FQGYEVVVEGCLECR--EYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ C +CR ++ A T M +RG P + +V+GL
Sbjct: 398 AISFNTLI--CGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGL 443
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 7/189 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ +++ C++ V D LL +K + G PD + N +++ LC ++ EA +L GM +
Sbjct: 332 TVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVDEAEVLLSGMEA 391
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANR 256
C P+ S++ +I A K A+ KEM L G+ P +++ R
Sbjct: 392 KGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM-LKRGVKPTVVTYNILVDGLCKARQEG 450
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ +A+ + + + KG Y +++G + + A + + M +G IP +
Sbjct: 451 RIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYN 510
Query: 317 KVVEGLAGV 325
++ GL G+
Sbjct: 511 SLISGLCGL 519
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/221 (22%), Positives = 100/221 (45%), Gaps = 12/221 (5%)
Query: 53 LLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTL 110
LL E +PN SF + R + + +F + R +P + Y+ L+
Sbjct: 385 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLC 444
Query: 111 QSLHP--LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSI 165
++ + A+ + + G VP ++ SA ++ ++ + D +L M++
Sbjct: 445 KARQEGRIKEAITLFDAMIEKGRVP----DVVTYSALIDGLGKAGKLDDARRLLGAMEAK 500
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L+S LC +D++ EA ++ M CVPD +Y +I A+ + A
Sbjct: 501 GCIPNVYTYNSLISGLCGLDKVDEALELFVAMVEKGCVPDTITYGTIISALCKQEMVDKA 560
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ + + L G++P GM + L A + +A+++++
Sbjct: 561 LALF-DGSLEAGVVPTSGMYFSLIDGLCAVARVDEALKLLQ 600
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/205 (27%), Positives = 89/205 (43%), Gaps = 13/205 (6%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A L C ++D + M GY PD T N L+ C + +L EA K+ G
Sbjct: 89 NALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGKLDEALKIFDGAVK 148
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
VPD+ +Y+ +I A K ++A +++ MV + L+P + L N +
Sbjct: 149 RGFVPDVVTYNALINGFCKADKLDEAQRILQRMV-SESLVPDVVTYNSLVNGLCKNGRVD 207
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A +I KG Y ++ G C E R A + + M G P I +
Sbjct: 208 EARMLI---VDKGFSPNVITYSTLISGLCRELRRLESARQLLEKMVLNGCKPDIVSYNAL 264
Query: 319 VEGLA---GVGE-WKL-ATVVRQRF 338
+ GLA GV E KL +V+RQ +
Sbjct: 265 IHGLAREQGVSEALKLFGSVLRQGY 289
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 11/198 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCN 175
AL +L+ GCVP ++ +A + C+ + V A++LL M++ G P+ + N
Sbjct: 347 ALLMLKDMDEKGCVP----DVVSHNAVINGLCKEKRVDEAEVLLSGMEAKGCSPNAISFN 402
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR---KTNDAVEMMKEM 232
L+ C + +A K M P + +Y+I++ + AR + +A+ + M
Sbjct: 403 TLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAM 462
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G +P + L ++ A ++ +E KGC Y ++ G +
Sbjct: 463 I-EKGRVPDVVTYSALIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLDK 521
Query: 293 YILAGKTVMGMTERGFIP 310
A + + M E+G +P
Sbjct: 522 VDEALELFVAMVEKGCVP 539
>gi|224109690|ref|XP_002315278.1| predicted protein [Populus trichocarpa]
gi|222864318|gb|EEF01449.1| predicted protein [Populus trichocarpa]
Length = 728
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 62/258 (24%), Positives = 113/258 (43%), Gaps = 4/258 (1%)
Query: 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRS 129
L FP +H I++ + FI + + +++ L+ + + A+ +L +
Sbjct: 169 LVRFPSSHSIRLSKAVFTDFIKIGVKINTN-SFNILIHGSCME-NRFGEAIRVLGKMRDY 226
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
GC P I L ++ + D+LL+MK+ G P+ T N LV C + L E
Sbjct: 227 GCPP-DNITYNTILDGLCKKGRLNEARDLLLDMKNKGLFPNRTTFNILVVGCCRLGWLKE 285
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
AA V++ MS VPD +Y+++I + +A+ + +EM N+ L P +
Sbjct: 286 AANVIELMSQNSVVPDAWTYNVMISGFCKQGRIAEAMRLREEME-NLKLSPDVVTYNTLI 344
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+ + ++IE +E +G Y V+V+ ++ + KTV M E G +
Sbjct: 345 NGCFEHGSSEEGFKLIEEMEGRGMKPNSVTYNVMVKWFVKKGKMDEVDKTVRKMEESGCL 404
Query: 310 PYIKVRQKVVEGLAGVGE 327
P I ++ VG+
Sbjct: 405 PDIVTYNTLISWHCKVGK 422
>gi|357142605|ref|XP_003572629.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 543
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 87/185 (47%), Gaps = 20/185 (10%)
Query: 119 ALAILQRTLRSGCVP-----VPQIRLLLSSA-WLERRCQSQSVADILL-EMKSIGYHPDC 171
AL +L GC P P ++ L SS W E AD LL +M S PD
Sbjct: 249 ALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEE--------ADKLLTKMFSNDCAPDE 300
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N +++SLC + A KVL MS C PD+ +YS ++ + R+ ++A++++KE
Sbjct: 301 VTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIKLLKE 360
Query: 232 MVLNM---GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-- 286
++ M +P Q + +L +A+++++ + GC Y +V+G
Sbjct: 361 LLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFL 420
Query: 287 CLECR 291
C C+
Sbjct: 421 CKSCK 425
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/226 (25%), Positives = 102/226 (45%), Gaps = 6/226 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+ L GC P +L A + Q+V +L EM+S G PD T N L+
Sbjct: 179 ALAVFDDMLHRGCSPSVVTYSILLDATCKESGYKQAVV-LLDEMRSKGCEPDIVTYNVLI 237
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+++C+ + EA KVL + S C PD +Y+ V+ ++ ++ + +A +++ +M N
Sbjct: 238 NAMCSQGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSN-DC 296
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR--EYIL 295
P + V +L + +A +++ + GC Y +++G C E R E I
Sbjct: 297 APDEVTFNAVITSLCQKGFVGRATKVLAQMSEHGCTPDIITYSSIMDGLCKERRVDEAIK 356
Query: 296 AGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
K ++ M + IP ++ L G + A V +E
Sbjct: 357 LLKELLAEMVSKNCIPDQVTFNTIITSLCQKGLFDRAIKVVDEMSE 402
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 59/216 (27%), Positives = 96/216 (44%), Gaps = 13/216 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV-------ADILLEMKSIGYHPDC 171
A +L + GC P ++ S+ ++ C+ + V ++L EM S PD
Sbjct: 319 ATKVLAQMSEHGCTP----DIITYSSIMDGLCKERRVDEAIKLLKELLAEMVSKNCIPDQ 374
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS-IVIGAMSTARKTNDAVEMMK 230
T N +++SLC A KV+ MS C+PD+ +Y+ IV G + + KT +A++++
Sbjct: 375 VTFNTIITSLCQKGLFDRAIKVVDEMSEHGCIPDITTYNCIVDGFLCKSCKTEEALDLLN 434
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
MV N GL P +A L EM +A+ M ++ G Y ++ G +
Sbjct: 435 LMVSN-GLCPDTTTYKSLAFGLSREDEMERAIGMFRRVQAMGLSPDKMLYNAILLGLCKK 493
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
LA M G +P +VEG+A G
Sbjct: 494 WRTDLAIDFFAYMVSNGCMPDESTYIILVEGIAYEG 529
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 1/206 (0%)
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
P ++ + + C++ ++ + S+ + PD T N L+ +LC +++A V
Sbjct: 124 PSATIITYNTMVNGYCRAGNIDAARRMIDSVPFAPDTFTYNPLIRALCVRGCVLDALAVF 183
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C P + +YSI++ A AV ++ EM + G P + A+ +
Sbjct: 184 DDMLHRGCSPSVVTYSILLDATCKESGYKQAVVLLDEM-RSKGCEPDIVTYNVLINAMCS 242
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
++ +A++++ L GC Y V++ + A K + M P
Sbjct: 243 QGDVGEALKVLNSLPSYGCKPDAVTYTPVLKSLCSSERWEEADKLLTKMFSNDCAPDEVT 302
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAE 340
V+ L G AT V + +E
Sbjct: 303 FNAVITSLCQKGFVGRATKVLAQMSE 328
>gi|356523400|ref|XP_003530328.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Glycine max]
Length = 664
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 61/245 (24%), Positives = 104/245 (42%), Gaps = 6/245 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADI 158
++Y ++S+ L + + LALA+L + +R GC P V L+ +L R +
Sbjct: 283 VSYSSVISW-LSDVGEVELALAVLGKMIRRGCRPNVHTFSSLMKGYFLGGRVGEG--VGL 339
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMS 217
M G P+ N L++ LC L EA V M C P++ +YS ++
Sbjct: 340 WRVMVLEGVRPNVVVYNTLLNGLCCSGNLAEAVDVCGRMEKDCFCRPNVTTYSTLVHGFV 399
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A A E+ +MV N G+ P + + L N +A +I+ + GCP
Sbjct: 400 KAGDLQGASEVWNKMV-NCGVRPNVVVYTSMVDVLCKNSMFDQAYRLIDNMATDGCPPTV 458
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ ++G + A + V M G +P + ++++GL V E K A + +
Sbjct: 459 VTFNTFIKGLCCGGRVLWAMRVVDQMQRYGCLPDTRTYNELLDGLFSVNELKEACELIRE 518
Query: 338 FAELK 342
E K
Sbjct: 519 LEERK 523
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 53/113 (46%), Gaps = 1/113 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWL-ERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL + R GC P +I L A L E + + + M+ G P+ T N L
Sbjct: 127 ALKMFYRIKEFGCKPTVKIYNHLLDALLGESGNKFHMIGAVYENMRGEGMEPNVFTYNVL 186
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ +LC +L A K+L MS CVPD SY+ V+ AM + +A E+ +
Sbjct: 187 LKALCKNGKLDGACKLLVEMSKRGCVPDGVSYTTVVAAMCEDGRVEEAREVAR 239
>gi|356510082|ref|XP_003523769.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 602
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 109/243 (44%), Gaps = 9/243 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L +L L A+ +L R L+ C P ++ + +E C V
Sbjct: 209 VTYNTILR-SLCDSGKLKEAMEVLDRQLQRECYP----DVITYTILIEATCNDSGVGQAM 263
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ G PD T N L++ +C +L EA K L M S C P++ +++I++ +M
Sbjct: 264 KLLDEMRKKGCKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCKPNVITHNIILRSM 323
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + DA ++ +M L G P + L R + +A++++E + + GC
Sbjct: 324 CSTGRWMDAERLLSDM-LRKGCSPSVVTFNILINFLCRKRLLGRAIDVLEKMPKHGCVPN 382
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y ++ G + ++ A + + M RG P I ++ L G+ A +
Sbjct: 383 SLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILN 442
Query: 337 RFA 339
+ +
Sbjct: 443 QLS 445
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 105/240 (43%), Gaps = 43/240 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ +L++ + GCVP L + L CQ + + + L M S G +PD T N
Sbjct: 367 AIDVLEKMPKHGCVP----NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIVTYN 422
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+++LC ++ A ++L +SS C P L +Y+ VI ++ KT AVE+++EM
Sbjct: 423 TLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAVELLEEM-RR 481
Query: 236 MGLMPR---------------------------QGMVIKVAA--------ALRANREMWK 260
GL P +G+ IK +A L ++ +
Sbjct: 482 KGLKPDIITYSTLLRGLGREGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQTSR 541
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A++ + ++ KGC Y +++EG + A + + + RGF+ Q VV+
Sbjct: 542 AIDFLAYMVEKGCKPTEATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQVVVK 601
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 92/215 (42%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L A+ L GC P ++ + L C + D +L +M G P
Sbjct: 294 LDEAIKFLNNMPSYGCKP----NVITHNIILRSMCSTGRWMDAERLLSDMLRKGCSPSVV 349
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ LC L A VL+ M CVP+ SY+ ++ +K + A+E + E+
Sbjct: 350 TFNILINFLCRKRLLGRAIDVLEKMPKHGCVPNSLSYNPLLHGFCQEKKMDRAIEYL-EI 408
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+++ G P + AL + ++ AVE++ L KGC Y V++G + +
Sbjct: 409 MVSRGCYPDIVTYNTLLTALCKDGKVDAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 468
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + + M +G P I ++ GL G+
Sbjct: 469 TEYAVELLEEMRRKGLKPDIITYSTLLRGLGREGK 503
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 98/215 (45%), Gaps = 15/215 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
L L+R + G +P ++ ++ + C+S + I+ +++ G PD T N
Sbjct: 125 GLKFLERMIYQGDIP----DVIACTSLIRGFCRSGKTKKATRIMEILENSGAVPDVITYN 180
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C ++ +A +VL+ MS A PD+ +Y+ ++ ++ + K +A+E++ L
Sbjct: 181 VLIGGYCKSGEIDKALEVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEVLDRQ-LQ 236
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P + A + + +A+++++ + +KGC Y V++ G C+E L
Sbjct: 237 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI--CKEGRL 294
Query: 296 --AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
A K + M G P + ++ + G W
Sbjct: 295 DEAIKFLNNMPSYGCKPNVITHNIILRSMCSTGRW 329
>gi|302767030|ref|XP_002966935.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
gi|300164926|gb|EFJ31534.1| hypothetical protein SELMODRAFT_87043 [Selaginella moellendorffii]
Length = 428
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 83/179 (46%), Gaps = 5/179 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM G PD T ++S LC +++ +A +V KGM CVPD +YSI++ +
Sbjct: 172 EMLEEMDRGGISPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLDNL 231
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S A + + E+++ MV + + A +RA ++ A E GC +
Sbjct: 232 SRANRLDTVEEVLEHMVKSGHYALSATYAPLIHALIRAG-DIESASWAYEQAMEAGCVME 290
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKLA 331
+ + ++ LA ++GM E G +P + V++GL G WKL+
Sbjct: 291 VYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLS 349
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 73/153 (47%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G P+ T L+ LC + +A + +K M + C PDL +Y+ +I +
Sbjct: 67 LLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 126
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + +DA +++E+++ G +P + L ++ K +EM+E ++R G
Sbjct: 127 MANRMDDAGLVLQELMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGISPDV 186
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ ++ G + A + GM ERG +P
Sbjct: 187 VTFCSIISGLCKANRIDDAFQVFKGMLERGCVP 219
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 55 GSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111
G E C P+ ++ L N + +R+ ++E+LE + + Y LS T
Sbjct: 211 GMLERGCV-PDSLTYSIMLDNLSRANRLDTVEEVLEHMVK---------SGHYALSATYA 260
Query: 112 SL-HPLPLALAI------LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS---VADILLE 161
L H L A I ++ + +GCV + + +A++ C+S +ILL
Sbjct: 261 PLIHALIRAGDIESASWAYEQAMEAGCV----MEVYTHNAFIGALCRSGKFPLAKNILLG 316
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTAR 220
M G P+ + N+++ LC + +A K+ + M S C PD+ ++ +I A
Sbjct: 317 MIESGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAG 376
Query: 221 KTNDAVEMMKEM 232
+ + A +++KEM
Sbjct: 377 RLSQAQQLLKEM 388
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 9/122 (7%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGY-HPDC 171
PLA IL + SG +P LL + ++ C+S +V D + +M G PD
Sbjct: 307 FPLAKNILLGMIESGSLP----NLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDV 362
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTNDAVEMMK 230
N L+S C +L +A ++LK M + CVPD+ +Y+ +I S A +++
Sbjct: 363 IFFNTLISGFCKAGRLSQAQQLLKEMKAKNICVPDVVTYNTMIDGQSKFGSLKQAKLLLE 422
Query: 231 EM 232
EM
Sbjct: 423 EM 424
>gi|297843788|ref|XP_002889775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335617|gb|EFH66034.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 111/243 (45%), Gaps = 9/243 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L S L A+ +L R L+ C P ++ + +E C+ V
Sbjct: 205 VTYNTILRSLCDS-GKLKQAMEVLDRMLQRDCYP----DVITYTILIEATCRDSGVGQAM 259
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ G PD T N LV+ +C +L EA K L M S+ C P++ +++I++ +M
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + DA +++ +M L G P + L + +A++++E + + GC
Sbjct: 320 CSTGRWMDAEKLLADM-LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPKHGCQPN 378
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y ++ G + ++ A + + M RG P I ++ L G+ + A +
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 337 RFA 339
+ +
Sbjct: 439 QLS 441
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+ IL++ + GC P L + + + +++ + L M S G +PD T N
Sbjct: 360 LGRAIDILEKMPKHGCQPNSLSYNPLLHGFCKEKKMDRAI-EYLERMVSRGCYPDIVTYN 418
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++++LC ++ +A ++L +SS C P L +Y+ VI ++ A KT A++++ EM
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L P + L ++ +A++ ER G + ++ G + R+
Sbjct: 479 -DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDR 537
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A ++ M RG P ++EGLA G K A
Sbjct: 538 AIDFLVYMINRGCKPTETSYTILIEGLAYEGMAKEA 573
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A IL+ SG VP ++ + + C++ + + L + + PD T N ++
Sbjct: 156 AAKILEVLEGSGAVP----DVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTIL 211
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SLC +L +A +VL M +C PD+ +Y+I+I A A++++ EM + G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGQAMKLLDEM-RDRGC 270
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + +A++ + + GC + +++ ++ A K
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 299 TVMGMTERGFIPYI 312
+ M +GF P +
Sbjct: 331 LLADMLRKGFSPSV 344
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 13/199 (6%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R +++ A IL ++ G PD T N ++S C ++ A VL MS + PD+
Sbjct: 149 RMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVV 205
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ ++ ++ + K A+E++ M+ I + A R + + +A+++++
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR-DSGVGQAMKLLDE 264
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ +GC Y V+V G C+E L A K + M G P + ++ +
Sbjct: 265 MRDRGCTPDVVTYNVLVNGI--CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 326 GEWK-----LATVVRQRFA 339
G W LA ++R+ F+
Sbjct: 323 GRWMDAEKLLADMLRKGFS 341
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 85/170 (50%), Gaps = 11/170 (6%)
Query: 162 MKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
++++ YH PD C L+ C + + +AAK+L+ + + VPD+ +Y+++I
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRMGKTRKAAKILEVLEGSGAVPDVITYNVMISGYCK 184
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A + N+A+ ++ M ++ P + +L + ++ +A+E+++ + ++ C
Sbjct: 185 AGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 279 GYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++E CR+ + A K + M +RG P + +V G+ G
Sbjct: 241 TYTILIEA--TCRDSGVGQAMKLLDEMRDRGCTPDVVTYNVLVNGICKEG 288
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L R + E + +G P+ T N ++ LC Q A L M + C
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGVRPNAVTFNSIMLGLCKTRQTDRAIDFLVYMINRGCK 551
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
P SY+I+I ++ +A+E++ E+ N GLM R
Sbjct: 552 PTETSYTILIEGLAYEGMAKEALELLNELC-NKGLMKR 588
>gi|413921612|gb|AFW61544.1| hypothetical protein ZEAMMB73_526638 [Zea mays]
Length = 456
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 2/225 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A L G P + R LL L R + L M G PD T N L
Sbjct: 233 AQAFLDDMAGRGLRPPVRGRDLLVDG-LVRAGHLEQAKAFALRMTKEGILPDVATFNSLA 291
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC + A +L SS PD+ +Y +++ A++ K +A + V + G
Sbjct: 292 EALCNAGDVDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVED-GH 350
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + AL A ++ KG P Y ++V+ C+ ++ A
Sbjct: 351 RPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAAN 410
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
++ M+E GF P VV+GL G+ LA + Q LK
Sbjct: 411 YLVEMSEAGFTPRAPTFSAVVDGLRHCGKHDLARRLEQLEVSLKG 455
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/232 (22%), Positives = 93/232 (40%), Gaps = 19/232 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ + R R GC PQ + + A L+ C + + +L M G PD T +
Sbjct: 163 AVEVFNRLPRFGC---PQTTEVYN-ALLDALCANGNFTGAYKLLRRMARKGVAPDRATFS 218
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV S CA +L EA L M+ P + +++ + A +E K L
Sbjct: 219 TLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGH----LEQAKAFALR 274
Query: 236 M---GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECR 291
M G++P +A AL ++ AV ++ +G CP Y+V++ +
Sbjct: 275 MTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCP-DISTYKVMLPAVAKVG 333
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ A + E G P+ + +++ L G + A F ++K+
Sbjct: 334 KIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAF---FGDMKT 382
>gi|224160015|ref|XP_002338159.1| predicted protein [Populus trichocarpa]
gi|222871069|gb|EEF08200.1| predicted protein [Populus trichocarpa]
Length = 368
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/214 (22%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A + ++ +GC P V ++ S +RR DI MK+ G P+ T N L
Sbjct: 29 AAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNE--ALDIFSYMKAKGISPNIFTYNSL 86
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ LC + EA+ +L M S +P++ ++S++I +A ++K M MG
Sbjct: 87 IQGLCNFSRWREASAMLNEMMSLNIMPNIVTFSLLINIFCKEGNVFEARGVLKTMT-EMG 145
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + E+++A ++ + + KGC Y +++ G + + A
Sbjct: 146 VEPNVVTYSSLMNGYSLQAEVFEARKLFDVMITKGCKPDVFSYNILINGYCKAKRIGEAK 205
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M +G P I +++GL +G + A
Sbjct: 206 QLFNEMIHQGLTPDIVSYNTLIDGLCQLGRLREA 239
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY PD T +++ LC I + V AA + K M A C PD+ +YS +I ++ R+ N+A
Sbjct: 5 GYQPDVHTYTTIINGLCKIGETVAAAGLFKKMGEAGCQPDVVTYSTIIDSLCKDRRVNEA 64
Query: 226 VEMMKEM 232
+++ M
Sbjct: 65 LDIFSYM 71
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 51/119 (42%), Gaps = 14/119 (11%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M + G PD + N L++ C ++ EA ++ M PD+ SY+ +I + +
Sbjct: 176 MITKGCKPDVFSYNILINGYCKAKRIGEAKQLFNEMIHQGLTPDIVSYNTLIDGLCQLGR 235
Query: 222 TNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRANREMWKAVEMIEF 267
+A ++ K M+ N G +P +QG + K RA + + M+ +
Sbjct: 236 LREAHDLFKNMLTN-GNLPDLCTYSILLDGFCKQGYLAKAFRLFRAMQSTYLKPNMVMY 293
>gi|147776740|emb|CAN72416.1| hypothetical protein VITISV_027905 [Vitis vinifera]
Length = 422
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 76/344 (22%), Positives = 130/344 (37%), Gaps = 57/344 (16%)
Query: 10 RSLVNFRPCLLQFSSLRSMSSLRTLEETVRA---AVDAKDYQQIPELLGSFEEACQNPNP 66
S +F +L+ R S ++ L +++ +++ + I E+ G Q
Sbjct: 45 HSYSSFHILILKLGWARQFSLMQDLLMRLKSEQYSINPSLFSDIIEIYGEANLPDQALKT 104
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP-----KIAYDYLLSYTLQSLH------- 114
F + F K ++ +L+ + R RP K A+ Y +S +S +
Sbjct: 105 FHSMLQFHSKPLPKHLNXLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILMSAFC 164
Query: 115 ---PLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
L +A + + + P V R+L+ L R+ Q D+L +M + GY PD
Sbjct: 165 FNGDLSIAYTLFNQMFKRDVAPDVESYRILMQG--LCRKSQVNRAVDLLEDMLNKGYVPD 222
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ L++SLC +L EA K+L M C PD+ Y+ VI + DA ++++
Sbjct: 223 ALSYTTLLNSLCRKKKLKEAYKLLCRMKVKGCNPDIVHYNTVILGFCREGRXLDACKVLE 282
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+M N GC Y +V G +
Sbjct: 283 DMPSN------------------------------------GCSPNLMSYGTLVSGLCDQ 306
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y A V M +GF P+ V ++ G VG+ + A V
Sbjct: 307 GLYDEAKNYVEEMLSKGFSPHFSVFHALINGFCNVGKLEEACEV 350
>gi|297833172|ref|XP_002884468.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330308|gb|EFH60727.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 598
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 73/294 (24%), Positives = 125/294 (42%), Gaps = 35/294 (11%)
Query: 10 RSLVNFRPCLLQFSSLRSMSS--LRTLE-ETVRAAVDAKDYQQIPELLGS--------FE 58
RSL+ F + +S SS R L+ T AA+ + QQ + LG F
Sbjct: 34 RSLLTFSNSNPNHDNGKSFSSSGARNLQATTTDAAIPTERRQQHSQSLGFRDTQMLKIFH 93
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPL 118
+C++ N L +LE+ + R P + L +L +P
Sbjct: 94 RSCRSGNYIESL-------------HLLETMV--RKGYNPDVILCTKLIKGFFTLRNVPK 138
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ +++ + G Q + +A + C+ + D +L M+S + PD T N
Sbjct: 139 AVRVMEILEKFG-----QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSPDTVTYN 193
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ SLC+ +L A KVL + S C P + +Y+I+I A ++A++++ EM L+
Sbjct: 194 IMIGSLCSRGKLDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDEALKLLDEM-LS 252
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
GL P + + + +A EMI LE KGC Y +++ L
Sbjct: 253 RGLKPDMFTYNTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLN 306
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/196 (28%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 52 ELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLS 107
LL +E P+ +S+ ++ F + R+ V E LE+ I P I Y+ +L+
Sbjct: 350 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLA 407
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
TL AL I + GC P + S+ W ++LEM S G
Sbjct: 408 -TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW--SSGDKIRALHMILEMVSNG 464
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++S LC + +A ++L M S E P + +Y+IV+ A + DA+
Sbjct: 465 IDPDEITYNSMISCLCREGMVDKAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 524
Query: 227 EMMKEMVLNMGLMPRQ 242
+++ MV N G P +
Sbjct: 525 DVLDSMVGN-GCRPNE 539
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 128/289 (44%), Gaps = 23/289 (7%)
Query: 64 PNPFSF---LSNFPQNHRI----KVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
P+ F++ ++ F + +RI +V+D M + F P + Y+ ++ +L S
Sbjct: 152 PDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFSP------DTVTYNIMIG-SLCSRGK 204
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L LAL +L + L C P V +L+ + LE +L EM S G PD T
Sbjct: 205 LDLALKVLDQLLSDNCQPTVITYTILIEATMLEGGVDE--ALKLLDEMLSRGLKPDMFTY 262
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ +C + A ++++ + C PD+ SY+I++ A+ K + ++M +M
Sbjct: 263 NTIIRGMCKEGMVDRAFEMIRNLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM-F 321
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ P + L + ++ +A+ +++ ++ KG Y+ ++ CRE
Sbjct: 322 SEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF--CREGR 379
Query: 295 L--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
L A + + M G +P I V+ L G+ A + + E+
Sbjct: 380 LDVAIEFLETMISDGCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEV 428
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M S P+ T + L+++LC ++ EA +LK M PD SY +I A
Sbjct: 316 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 375
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+E ++ M+ + G +P V A L N + +A+E+ L GC
Sbjct: 376 REGRLDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 434
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y + + I A ++ M G P
Sbjct: 435 SSYNTMFSALWSSGDKIRALHMILEMVSNGIDP 467
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 42/77 (54%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L++M+S +HP T N ++ C ++ +A VL M C P+ +Y+++I +
Sbjct: 490 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAIDVLDSMVGNGCRPNETTYTVLIEGI 549
Query: 217 STARKTNDAVEMMKEMV 233
A +A+E+ ++V
Sbjct: 550 GFAGYRAEAMELANDLV 566
>gi|302808965|ref|XP_002986176.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
gi|300146035|gb|EFJ12707.1| hypothetical protein SELMODRAFT_182249 [Selaginella moellendorffii]
Length = 609
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 82/180 (45%), Gaps = 5/180 (2%)
Query: 149 RCQSQSVADILLEMKSIGY-HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RC+ A L + + PD + N ++S C L A ++L+ M SA PD
Sbjct: 89 RCKKHREAGDLFRSELLASCEPDVCSYNIVISGFCNAGDLHAALELLEEMKSAGFAPDAF 148
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I AM+ A + A++ ++ +MG P + AA +++ +A++++E
Sbjct: 149 THTPIITAMANAGDLDGAMDHLR----SMGCDPNVVTYTALIAAFARAKKLEEAMKLLEE 204
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +GCP Y V+V+ + A V M E GF P + +V+G G
Sbjct: 205 MRERGCPPNLVTYNVLVDALCKLSMVGAAQDVVKKMIEGGFAPNVMTFNSLVDGFCKRGN 264
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 69/331 (20%), Positives = 129/331 (38%), Gaps = 72/331 (21%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLAL 120
+PN ++ + R K ++E ++ +R R P + Y+ L+ L L + A
Sbjct: 176 DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVD-ALCKLSMVGAAQ 234
Query: 121 AILQRTLRSGCVP-----------------VPQIRLLLS--------------SAWLERR 149
++++ + G P V R LL SA ++
Sbjct: 235 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 294
Query: 150 CQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+SQ ++L EMK+ G PD T + L+ LC D++ EA ++L+ M+ + C PD+
Sbjct: 295 CKSQKFLEAKEVLEEMKTRGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDV 354
Query: 207 ESYSIVIGA----------------MSTARKTNDAVE-------------------MMKE 231
YS +I A M RK+ D V ++++
Sbjct: 355 VVYSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQ 414
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
M + ++P V L + + +A ++++ + + GC Y +++G +C
Sbjct: 415 MQESGDVLPDVVTYSTVINGLCKSDMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCG 474
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + GM G P + ++ GL
Sbjct: 475 RLEEAEYLLQGMKRAGCAPNVVTYTTLISGL 505
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 123/301 (40%), Gaps = 10/301 (3%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAY 102
+A D ELL + A P+ F+ +D ++ + P +
Sbjct: 124 NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG--CDPNVVT 181
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DIL 159
L L A+ +L+ GC P L+ + ++ C+ V D++
Sbjct: 182 YTALIAAFARAKKLEEAMKLLEEMRERGCPP----NLVTYNVLVDALCKLSMVGAAQDVV 237
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M G+ P+ T N LV C + +A K+L M + P++ +YS +I + +
Sbjct: 238 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 297
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+K +A E+++EM G+ P + L ++ +A +M+ + GC
Sbjct: 298 QKFLEAKEVLEEMKTR-GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 356
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
Y ++ + + + A KT+ M ++ P + V++GL +G+ A V+ ++
Sbjct: 357 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQ 416
Query: 340 E 340
E
Sbjct: 417 E 417
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 73/152 (48%), Gaps = 7/152 (4%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R P + + L L + A IL++ SG V +P + + S + C+S
Sbjct: 382 KQRKSPDVVTYNTVIDGLCKLGKIAEAQVILEQMQESGDV-LPDV--VTYSTVINGLCKS 438
Query: 153 QSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ + +L M G +PD T ++ LC +L EA +L+GM A C P++ +Y
Sbjct: 439 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 498
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ +I + ARK ++A +M+EM N G P
Sbjct: 499 TTLISGLCKARKVDEAERVMEEM-RNAGCPPN 529
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLV 178
+LQ R+GC P ++ + + C+++ V + ++ EM++ G P+ T N +V
Sbjct: 482 LLQGMKRAGCAP----NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMV 537
Query: 179 SSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+ LC ++ EA ++++ M AEC PD +Y ++ A+ ++ +A +++++M
Sbjct: 538 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQMKSTT 597
Query: 237 GLMPRQG 243
QG
Sbjct: 598 SSQQEQG 604
>gi|302142099|emb|CBI19302.3| unnamed protein product [Vitis vinifera]
Length = 609
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 127/294 (43%), Gaps = 63/294 (21%)
Query: 93 RPRSRPKIAYDYLLS---YTLQSLHPLPLALAIL--------------QRTLRSGCVPVP 135
+ +S+ KI + Y LS + LQ PLP+ + I+ Q+TL P
Sbjct: 26 KNKSKTKIVH-YGLSIPPFHLQQKTPLPIPIFIIFALIISVVSICCINQQTL------FP 78
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
L S +++ C+ V +L EM++ G PD T N L++ +C +L EA K
Sbjct: 79 CFSLSGFSFYVQTTCKESGVGQAMKLLDEMRNKGSKPDVVTYNVLINGICKEGRLDEAIK 138
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP------------ 240
L M S C P++ +++I++ +M + + DA +++ +M L G P
Sbjct: 139 FLNNMPSYGCQPNVITHNIILRSMCSTGRWMDAEKLLSDM-LRKGCSPSVVTFNILINFL 197
Query: 241 -RQGMVIKVAAALR----------------------ANREMWKAVEMIEFLERKGCPIGF 277
RQG++ + L ++M +A+E ++ + +GC
Sbjct: 198 CRQGLLGRAIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMVSRGCYPDI 257
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ + + +A + + ++ +G P + V++GL+ VG+ + A
Sbjct: 258 VTYNTLLTALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERA 311
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 96/213 (45%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ IL++ GC P L + + + +++ + L M S G +PD T N L+
Sbjct: 206 AIDILEKMPMHGCTPNSLSYNPLLHGFCKEKKMDRAI-EYLDIMVSRGCYPDIVTYNTLL 264
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A ++L +SS C P L +Y+ VI +S KT A++++ EM GL
Sbjct: 265 TALCKDGKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEM-RRKGL 323
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + L ++ +A++ LE G Y ++ G + R+ A
Sbjct: 324 KPDIITYSSLVSGLSREGKVDEAIKFFHDLEGLGIRPNAITYNSIMLGLCKSRQTDRAID 383
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M + P ++EG+A G K A
Sbjct: 384 FLAYMISKRCKPTEATYTILIEGIAYEGLAKEA 416
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 104/252 (41%), Gaps = 14/252 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+K++DEM S+P + +L + L A+ L GC P
Sbjct: 102 MKLLDEMRNK------GSKPDVVTYNVLINGICKEGRLDEAIKFLNNMPSYGCQP----N 151
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ + L C + D +L +M G P T N L++ LC L A +L+
Sbjct: 152 VITHNIILRSMCSTGRWMDAEKLLSDMLRKGCSPSVVTFNILINFLCRQGLLGRAIDILE 211
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C P+ SY+ ++ +K + A+E + MV + G P + AL +
Sbjct: 212 KMPMHGCTPNSLSYNPLLHGFCKEKKMDRAIEYLDIMV-SRGCYPDIVTYNTLLTALCKD 270
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ AVE++ L KGC Y V++G + + A K + M +G P I
Sbjct: 271 GKVDVAVEILNQLSSKGCSPVLITYNTVIDGLSKVGKTERAIKLLDEMRRKGLKPDIITY 330
Query: 316 QKVVEGLAGVGE 327
+V GL+ G+
Sbjct: 331 SSLVSGLSREGK 342
>gi|115441099|ref|NP_001044829.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|18461197|dbj|BAB84394.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113534360|dbj|BAF06743.1| Os01g0852900 [Oryza sativa Japonica Group]
gi|125572662|gb|EAZ14177.1| hypothetical protein OsJ_04103 [Oryza sativa Japonica Group]
Length = 703
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ + ++ + GC P I L S + CQ +D I +M G P T N
Sbjct: 458 AVKVYEKMDKDGCKPNSHIYNALISGF----CQVYRTSDAVRIYSKMADNGCSPTVITYN 513
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV-- 233
L+ LC ++ EA+ V + M PD+ +Y +I + + +K +DA+ + K+++
Sbjct: 514 TLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYK 573
Query: 234 -LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L + +M ++ + +A + + + +M E+K CP Y +++G E
Sbjct: 574 GLKVDVMMHNILIHGLCSAGKVDEALHVFSDM---KEKKNCPPNLVTYNTLMDGLYETGY 630
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A +TE G P I ++GL
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGL 660
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 36/165 (21%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I E + G D + + +++ LC + +LV+A KV + M C P+ Y+ +I
Sbjct: 426 IFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+T+DAV + +M N GC
Sbjct: 486 QVYRTSDAVRIYSKMADN------------------------------------GCSPTV 509
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++G + +Y A M E GF P I ++ GL
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554
>gi|15218325|ref|NP_172461.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122215618|sp|Q3EDF8.1|PPR28_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09900
gi|332190391|gb|AEE28512.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 598
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 9/243 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L +L L A+ +L R L+ C P ++ + +E C+ V
Sbjct: 205 VTYNTILR-SLCDSGKLKQAMEVLDRMLQRDCYP----DVITYTILIEATCRDSGVGHAM 259
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ G PD T N LV+ +C +L EA K L M S+ C P++ +++I++ +M
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + DA +++ +M L G P + L + +A++++E + + GC
Sbjct: 320 CSTGRWMDAEKLLADM-LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y ++ G + ++ A + + M RG P I ++ L G+ + A +
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 337 RFA 339
+ +
Sbjct: 439 QLS 441
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+ IL++ + GC P L + + + +++ + L M S G +PD T N
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI-EYLERMVSRGCYPDIVTYN 418
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++++LC ++ +A ++L +SS C P L +Y+ VI ++ A KT A++++ EM
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L P + L ++ +A++ ER G + ++ G + R+
Sbjct: 479 -DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A ++ M RG P ++EGLA G K A
Sbjct: 538 AIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A IL+ SG VP ++ + + C++ + + L + + PD T N ++
Sbjct: 156 AAKILEILEGSGAVP----DVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTIL 211
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SLC +L +A +VL M +C PD+ +Y+I+I A A++++ EM + G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGC 270
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + +A++ + + GC + +++ ++ A K
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 299 TVMGMTERGFIPYI 312
+ M +GF P +
Sbjct: 331 LLADMLRKGFSPSV 344
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R +++ A IL ++ G PD T N ++S C ++ A VL MS + PD+
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVV 205
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ ++ ++ + K A+E++ M+ I + A R + + A+++++
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR-DSGVGHAMKLLDE 264
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ +GC Y V+V G C+E L A K + M G P + ++ +
Sbjct: 265 MRDRGCTPDVVTYNVLVNGI--CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 326 GEWK-----LATVVRQRFA 339
G W LA ++R+ F+
Sbjct: 323 GRWMDAEKLLADMLRKGFS 341
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 162 MKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
++++ YH PD C L+ C + + +AAK+L+ + + VPD+ +Y+++I
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A + N+A+ ++ M ++ P + +L + ++ +A+E+++ + ++ C
Sbjct: 185 AGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 279 GYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++E CR+ + A K + M +RG P + +V G+ G A
Sbjct: 241 TYTILIEA--TCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L R + E + +G P+ T N ++ LC Q A L M + C
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK 551
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
P+ SY+I+I ++ +A+E++ E+ N GLM +
Sbjct: 552 PNETSYTILIEGLAYEGMAKEALELLNELC-NKGLMKK 588
>gi|125528410|gb|EAY76524.1| hypothetical protein OsI_04465 [Oryza sativa Indica Group]
Length = 703
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 92/210 (43%), Gaps = 13/210 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ + ++ + GC P I L S + CQ +D I +M G P T N
Sbjct: 458 AVKVYEKMDKDGCKPNSHIYNALISGF----CQVYRTSDAVRIYSKMADNGCSPTVITYN 513
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV-- 233
L+ LC ++ EA+ V + M PD+ +Y +I + + +K +DA+ + K+++
Sbjct: 514 TLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGLFSDKKIDDALSIWKQILYK 573
Query: 234 -LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L + +M ++ + +A + + + +M E+K CP Y +++G E
Sbjct: 574 GLKVDVMMHNILIHGLCSAGKVDEALHVFSDM---KEKKNCPPNLVTYNTLMDGLYETGY 630
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A +TE G P I ++GL
Sbjct: 631 IDKAATLWTSITEDGLEPDIISYNTRIKGL 660
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 36/165 (21%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I E + G D + + +++ LC + +LV+A KV + M C P+ Y+ +I
Sbjct: 426 IFEEARVSGKQLDVFSYSSMINGLCNVGRLVDAVKVYEKMDKDGCKPNSHIYNALISGFC 485
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+T+DAV + +M N GC
Sbjct: 486 QVYRTSDAVRIYSKMADN------------------------------------GCSPTV 509
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++G + +Y A M E GF P I ++ GL
Sbjct: 510 ITYNTLIDGLCKAEKYQEASSVAREMVENGFTPDITTYGSLIRGL 554
>gi|242093812|ref|XP_002437396.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
gi|241915619|gb|EER88763.1| hypothetical protein SORBIDRAFT_10g026180 [Sorghum bicolor]
Length = 786
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 65/294 (22%), Positives = 119/294 (40%), Gaps = 7/294 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + +I LL A P+ F+ + R ++DE + F L+ R +
Sbjct: 222 GRSWPRIVALLDEMRAAGVEPDDFTASTVIAACCRDGLVDEAVAFFEDLKARGHTPCVVT 281
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL AL +L+ + GC P L+ + R + A L
Sbjct: 282 YNALLQ-VFGKAGNYTEALRVLKEMEQDGCQPDAVTYNELAGTY-ARAGFYEEAAKCLDT 339
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ I ++ EA + M + CVP++ +Y+ ++G + +
Sbjct: 340 MTSKGLLPNAFTYNTVMTAYGNIGKVDEALALFDQMKKSGCVPNVNTYNFILGMLGKKSR 399
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGY 280
+EM+ EM + G P + + A+ R M V ++E ++ G + Y
Sbjct: 400 FTVMLEMLGEMSRS-GCTPNR-VTWNTMLAVCGKRGMEDYVTRVLEGMKSCGVELSRDTY 457
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ C A K MT GF P + ++ L+ G+W A +
Sbjct: 458 NTLIAAYGRCGSRTNAFKMYNEMTSAGFAPCLTTYNALLNVLSRQGDWSTAQSI 511
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 41/86 (47%), Gaps = 1/86 (1%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V +I +K G PD T N L+ + EA K+L + S++ PD+ SY+ VI
Sbjct: 613 VTEIFDSIKQSGLSPDLITYNSLMDMYAKCSESWEAEKILNQLKSSQVKPDVVSYNTVIN 672
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMP 240
+A ++ EM+ + G+ P
Sbjct: 673 GFCKQGLIKEAQRILSEMIAD-GMAP 697
>gi|297743427|emb|CBI36294.3| unnamed protein product [Vitis vinifera]
Length = 517
Score = 62.8 bits (151), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 93/207 (44%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A + + GC + ++ ++ LE C+ +V + + EM S G PD + +
Sbjct: 211 ARKLFEEMRERGCA----VDVVAYNSLLEALCKGGNVDEAYKLFREMGSNGLAPDACSYS 266
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ + C ++ + A +VL M VP++ +Y+ ++ + + K ++A +++ EM+
Sbjct: 267 IFIRAYCEVNDIHSAFQVLDRMRRYNLVPNVFTYNCIVKKLCKSEKVDEAYQLLDEMI-E 325
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + A + E+ KA+ +I +E++ C Y +V++ L +
Sbjct: 326 RGVSPDLWSYNAIQAFHCDHCEVNKALRLISRMEKENCMPDRHTYNMVLKMLLRVGRFDR 385
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
GM ERGF P +V G
Sbjct: 386 VTDVWGGMEERGFYPAASTYAVMVHGF 412
>gi|225443015|ref|XP_002267278.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Vitis vinifera]
Length = 624
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 83/180 (46%), Gaps = 4/180 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
LE C+ +V + + EM S G PD + + + + C ++ + A +VL M
Sbjct: 261 LEALCKGGNVDEAYKLFREMGSNGLAPDACSYSIFIRAYCEVNDIHSAFQVLDRMRRYNL 320
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VP++ +Y+ ++ + + K ++A +++ EM+ G+ P + A + E+ KA+
Sbjct: 321 VPNVFTYNCIVKKLCKSEKVDEAYQLLDEMI-ERGVSPDLWSYNAIQAFHCDHCEVNKAL 379
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+I +E++ C Y +V++ L + GM ERGF P +V G
Sbjct: 380 RLISRMEKENCMPDRHTYNMVLKMLLRVGRFDRVTDVWGGMEERGFYPAASTYAVMVHGF 439
>gi|240256396|ref|NP_199195.4| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635652|sp|P0C8R0.1|PP416_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g43820
gi|332007631|gb|AED95014.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 546
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 1/191 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + + M EC P+
Sbjct: 300 LGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPN 359
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G++P G+V L + A+ +
Sbjct: 360 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIY 418
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y+++++ + + M E G+ ++V + +V+GL +
Sbjct: 419 QKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCII 478
Query: 326 GEWKLATVVRQ 336
G + A +V +
Sbjct: 479 GHLENAVLVME 489
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N ++S + ++ E KVLK M + PD SYS +I + + ND+VE+
Sbjct: 254 DSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIF 313
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ + + G +P + + + R+ +++ + + C + Y +V G ++
Sbjct: 314 -DNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIK 372
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
R+ A + M RG +P + ++ L G A V+ Q+
Sbjct: 373 GRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQK 420
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 110 LQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L S P A+ I Q++ ++GC + +LLL L R + + ++ EM+ GY
Sbjct: 405 LCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKR--LSRFGKCGMLLNVWDEMQESGYP 462
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
D Y+V LC I L A V++ P+ YS + + + KT A ++
Sbjct: 463 SDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKL 522
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
+ IK A A R W++
Sbjct: 523 F--------------LKIKKARATENARSFWRS 541
>gi|168033824|ref|XP_001769414.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679334|gb|EDQ65783.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 410
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 94/211 (44%), Gaps = 4/211 (1%)
Query: 101 AYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
AY LLS Y Q L L A A+ + GC P L +A +R + + +
Sbjct: 67 AYTALLSGYAKQGL--LKEAWALFEAMKEKGCSPNVLTYNTLINACTKRAYRLPDLVGLF 124
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EMK G P+ T N +V++ + A+++LK M + C+P++ SY+ +I ++ +
Sbjct: 125 EEMKQAGVQPNDITYNCMVNACVCLSLFDTASQILKEMKAVNCLPNVISYTTMINSLGRS 184
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ ++AVE+ +EM +G P + A KA+ + +E +GC
Sbjct: 185 GRLDEAVELFEEMK-ELGRSPNSWTYNSLLKAYAREGRYEKAMCLFVGMEDEGCIPDLYT 243
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y V++ C + A + M +G P
Sbjct: 244 YNTVIDMCGRGGLFAEAEGVFLEMQRKGCTP 274
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 77/175 (44%), Gaps = 12/175 (6%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY---LLSYTLQSLHPLPLAL 120
PN S+ + R +DE +E F ++ R ++ Y L +Y + + + L
Sbjct: 169 PNVISYTTMINSLGRSGRLDEAVELFEEMKELGRSPNSWTYNSLLKAYAREGRYEKAMCL 228
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYL 177
+ GC+P L + ++ + A+ + LEM+ G PD T N +
Sbjct: 229 FVGMED--EGCIP----DLYTYNTVIDMCGRGGLFAEAEGVFLEMQRKGCTPDRVTYNTM 282
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ + + A +LK M A C PDL +Y+I++ A A ++A+++ E+
Sbjct: 283 LDAYSKWSRRGRARDLLKTMKRAGCTPDLWTYNILLDAAGKAGSASEAMQIFHEL 337
>gi|242039015|ref|XP_002466902.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
gi|241920756|gb|EER93900.1| hypothetical protein SORBIDRAFT_01g016180 [Sorghum bicolor]
Length = 653
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 101/219 (46%), Gaps = 9/219 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS--QSVADILLEMKSIGYHPDCGTCNY 176
AL++L R GC P+P + ++ A R +S +L ++ G D G CN
Sbjct: 134 ALSVLDEMRRRGCAPIPPMYHVILEAACSRGGGGGFRSAVRVLQDLHGRGCALDVGNCNL 193
Query: 177 LVSSLCAIDQ---LVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+++++C DQ + EA ++L+ + +S C PD+ SY+ V+ + A++ ++M+EM
Sbjct: 194 VLNAVC--DQGGSVDEALRLLRDLPTSFGCDPDVVSYNAVLKGLCMAKRWGRVQDLMEEM 251
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V +G P + L N + +++ + GC + Y V++G +
Sbjct: 252 V-RVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLDGVCKEGH 310
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+A + + M G P + V++GL W+ A
Sbjct: 311 LEVAHEILDRMPSYGLKPNVVCYNTVLKGLCSAERWEQA 349
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/240 (25%), Positives = 116/240 (48%), Gaps = 17/240 (7%)
Query: 38 VRAAVDAKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRP 94
++ A+ ++Q ELL F+ C + F+ L +F QN + + E+LE L
Sbjct: 337 LKGLCSAERWEQAEELLAEMFDNDCPLDDVTFNILVDFFCQNGLVYRVIELLEQM--LEH 394
Query: 95 RSRPK-IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
P I Y +++ + + L + A+ +L+ GC P + + L+ C +
Sbjct: 395 GCVPDVITYTTVINGFCKEGL--IDEAVMLLKSMAACGCRP----NTISYTIVLKGLCSA 448
Query: 153 Q---SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ D++ +M G P+ T N +++ LC + +A ++LK M C PDL SY
Sbjct: 449 ERWVDAEDLMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCSPDLISY 508
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
S VI + A KT++A+E++ MV N G+ P + +A+AL + + ++M + ++
Sbjct: 509 STVIDGLGKAGKTDEALELLNVMV-NKGMSPNTIIYSSIASALSKEGRINRVIQMFDNIQ 567
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 78/172 (45%), Gaps = 1/172 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++L +M G PD T +++ C + EA +LK M++ C P+ SY+IV+
Sbjct: 384 VIELLEQMLEHGCVPDVITYTTVINGFCKEGLIDEAVMLLKSMAACGCRPNTISYTIVLK 443
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA ++M +M+ G P V L + +A+E+++ + GC
Sbjct: 444 GLCSAERWVDAEDLMSQMI-EQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQMLLNGCS 502
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V++G + + A + + M +G P + + L+ G
Sbjct: 503 PDLISYSTVIDGLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASALSKEG 554
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 5/174 (2%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V D++ EM +G P+ T N L+ LC +VL M C PD+ Y+ V+
Sbjct: 244 VQDLMEEMVRVGCPPNVVTFNTLIGYLCRNGLFERVHQVLAQMVDHGCTPDIRMYATVLD 303
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A E++ M + GL P V L + +A E++ + CP
Sbjct: 304 GVCKEGHLEVAHEILDRMP-SYGLKPNVVCYNTVLKGLCSAERWEQAEELLAEMFDNDCP 362
Query: 275 IGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + ++V+ C+ ++ + + M E G +P + V+ G G
Sbjct: 363 LDDVTFNILVD--FFCQNGLVYRVIELLEQMLEHGCVPDVITYTTVINGFCKEG 414
Score = 37.7 bits (86), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 87/194 (44%), Gaps = 12/194 (6%)
Query: 42 VDAKDYQQIPELLGSFEEACQNPNPFSFLS--NF-PQNHRIKVIDEMLESFIPLRPRSRP 98
VDA+D L+ E +PNP +F + NF + ++ E+L+ + L S
Sbjct: 452 VDAED------LMSQMIEQGCSPNPVTFNTVINFLCKKGLVEQAIELLKQML-LNGCSPD 504
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
I+Y ++ L AL +L + G P I ++SA L + + V +
Sbjct: 505 LISYSTVID-GLGKAGKTDEALELLNVMVNKGMSPNTIIYSSIASA-LSKEGRINRVIQM 562
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
++ + D N ++SSLC A + L M S+ C+P+ +Y+I+I +++
Sbjct: 563 FDNIQDVTIRSDAVLYNAVISSLCKRGGTDRAIEFLAYMVSSGCMPNESTYTILIRGLAS 622
Query: 219 ARKTNDAVEMMKEM 232
+A EM+ E+
Sbjct: 623 EGFVKEAQEMLTEL 636
>gi|293336637|ref|NP_001167760.1| hypothetical protein [Zea mays]
gi|223943823|gb|ACN25995.1| unknown [Zea mays]
gi|414877894|tpg|DAA55025.1| TPA: hypothetical protein ZEAMMB73_945476 [Zea mays]
Length = 536
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 1/168 (0%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
Y P N L+ + I L K K M C P++E+YS +I A R+ DA+
Sbjct: 311 YGPTTMAYNVLIFNFIHIGDLDSCIKYYKDMLDKNCSPNIETYSKMIKAFLRGRRVADAL 370
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+M +M++ G++P GM+ L A+ + + + GC I + Y++++E
Sbjct: 371 QMFDDMLIQ-GVLPNTGMITSFINPLCTFGPPHAALMIYKKSRKAGCVISLKAYKLLLER 429
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + + M E G+ P ++ + +V GL VG+ A V
Sbjct: 430 LAKFGKSGIVLDIWEEMQECGYQPDKEIYEFIVNGLCNVGKVDAAVSV 477
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 110 LQSLHPLPLALAILQRTLRSGCV-PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L + P AL I +++ ++GCV + +LLL L + +S V DI EM+ GY
Sbjct: 395 LCTFGPPHAALMIYKKSRKAGCVISLKAYKLLLER--LAKFGKSGIVLDIWEEMQECGYQ 452
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLK 195
PD ++V+ LC + ++ A V++
Sbjct: 453 PDKEIYEFIVNGLCNVGKVDAAVSVVE 479
>gi|10177952|dbj|BAB11311.1| unnamed protein product [Arabidopsis thaliana]
Length = 680
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 89/189 (47%), Gaps = 1/189 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + + M EC P+
Sbjct: 300 LGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPN 359
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G++P G+V L + A+ +
Sbjct: 360 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIY 418
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y+++++ + + M E G+ ++V + +V+GL +
Sbjct: 419 QKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCII 478
Query: 326 GEWKLATVV 334
G + A +V
Sbjct: 479 GHLENAVLV 487
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N ++S + ++ E KVLK M + PD SYS +I + + ND+VE+
Sbjct: 254 DSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIF 313
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ + + G +P + + + R+ +++ + + C + Y +V G ++
Sbjct: 314 -DNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIK 372
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
R+ A + M RG +P + ++ L G A V+ Q+
Sbjct: 373 GRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQK 420
>gi|356564958|ref|XP_003550712.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Glycine max]
Length = 635
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 83/157 (52%), Gaps = 4/157 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ M++ GY PD T + +V LC + + EA KVL+ M S+ C+PD+++++I+I
Sbjct: 392 NIVRTMRNAGYEPDNITYSQMVFGLCKMRRFEEACKVLEDMESSRCIPDIKTWTILIQGH 451
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+A + + A+ +M+ G P ++ +A + + + A E++ + RK C I
Sbjct: 452 CSANEVDKALLCFAKMI-EKGCDPDADLLDVLADGFLSQKRIEGAYELVAEISRK-CRIS 509
Query: 277 -FQG-YEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
+Q Y+ ++E L ++ A + + M + PY
Sbjct: 510 PWQATYKKLIEKLLGVMKFEEALELLRLMKSHNYPPY 546
>gi|302780869|ref|XP_002972209.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
gi|300160508|gb|EFJ27126.1| hypothetical protein SELMODRAFT_96926 [Selaginella moellendorffii]
Length = 363
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/145 (30%), Positives = 74/145 (51%), Gaps = 5/145 (3%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+E C + V D +L E+ + PD T LV C + ++VEA +VLK M+ EC
Sbjct: 122 VEGYCNAGLVDDAERLLEEIVASDCSPDVYTYTSLVDGFCKVKRMVEAHRVLKRMAKGEC 181
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ Y+ +I A +A K A ++++EMV N G+ P + ++ +A
Sbjct: 182 QPNVVIYTALIDAFCSAGKPTVAYKLLEEMVGN-GVQPNAITYRSLIGGFCGTGDLEEAH 240
Query: 263 EMIEFLER-KGCPIGFQGYEVVVEG 286
+M+E LER + C Y V+++G
Sbjct: 241 KMLERLERNENCKADMFAYRVMMDG 265
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V LL EM + G PD T N L+ LC ++ E ++ M + C PD+
Sbjct: 21 CMTNGVDSTLLLMEEMTATGCLPDINTYNTLIDGLCKTGRVPEVNRLFGEMKAKFCNPDV 80
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMV 233
+YS +IG + N A + +M+
Sbjct: 81 ITYSCLIGGFCKLDRINMACTLFDDML 107
>gi|15237345|ref|NP_197146.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170213|sp|Q9FFE3.1|PP388_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16420, mitochondrial; Flags: Precursor
gi|9759124|dbj|BAB09609.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332004907|gb|AED92290.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 535
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 14/265 (5%)
Query: 68 SFLSNFPQNHRIKVIDEML----ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
+ L+ QN R ++ M ESF P I LL L + + A +L
Sbjct: 160 TLLNVLIQNQRFDLVHAMFKNSKESF-----GITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
G VP + ++ R +S +L EM G++PD T L+ C
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGYVAR-GDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ + EAA V+ M E P+ +Y ++I A+ +K+ +A M EM L MP
Sbjct: 274 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEM-LERSFMPDSS 332
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ KV AL + ++ +A + + + C P ++ C E R + + +
Sbjct: 333 LCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR--VTEARKLFD 390
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGE 327
E+G IP + ++ G+ GE
Sbjct: 391 EFEKGSIPSLLTYNTLIAGMCEKGE 415
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSS--AWLERRCQSQSVADILLEMKSIGYHPDC 171
H + A + ++ L++ C+P LLS+ WL + + + E + G P
Sbjct: 345 HKVDEACGLWRKMLKNNCMPD---NALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSL 400
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L++ +C +L EA ++ M +C P+ +Y+++I +S + V +++E
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEE 460
Query: 232 MVLNMGLMPRQGMVIKVAAALR 253
M L +G P + + + L+
Sbjct: 461 M-LEIGCFPNKTTFLILFEGLQ 481
>gi|302818914|ref|XP_002991129.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
gi|300141060|gb|EFJ07775.1| hypothetical protein SELMODRAFT_236212 [Selaginella moellendorffii]
Length = 614
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 49/190 (25%), Positives = 95/190 (50%), Gaps = 10/190 (5%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
LLS W E+R Q++A IL EM+ G P+ T N L+ LC ++ A ++ + M S
Sbjct: 85 LLSGLWKEKR-LDQALA-ILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKS 142
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV----LNMGLMPRQGMV---IKVAAAL 252
EC P + +Y+ ++ + K A+ + +EM+ +M ++ + +
Sbjct: 143 VECSPSMVTYNTLLDGLFRTGKLERAMALFQEMLDRRSHDMDDRCSPNVITYSVLIDGLC 202
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ANR + +AVE++E ++ +GC Y ++V+G + + A + + M + G +P +
Sbjct: 203 KANR-VSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNL 261
Query: 313 KVRQKVVEGL 322
++ GL
Sbjct: 262 VTYNSLLHGL 271
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 20/189 (10%)
Query: 58 EEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLH 114
+ C+ PN ++ + +N+ E+ E + S + Y+ LL ++
Sbjct: 107 DHGCE-PNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVEC-SPSMVTYNTLLDGLFRT-G 163
Query: 115 PLPLALAILQRTL--RSG-----CVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKS 164
L A+A+ Q L RS C P ++ S ++ C++ V+ ++L MK+
Sbjct: 164 KLERAMALFQEMLDRRSHDMDDRCSP----NVITYSVLIDGLCKANRVSQAVELLESMKA 219
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G PD T LV LC ++ A +VL+ M A CVP+L +Y+ ++ + AR+ +D
Sbjct: 220 RGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSD 279
Query: 225 AVEMMKEMV 233
A+ +M++M
Sbjct: 280 ALALMRDMT 288
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 82/171 (47%), Gaps = 8/171 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
++A+L+R + G P ++ S+ + C+S + + +LL +KS G PD +
Sbjct: 350 SIALLRRAVSGGIKP----DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 405
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC ++ EA + + M+ C D+ +YS +I + A + ++A ++ MV
Sbjct: 406 TLIDGLCKAGKVDEAFDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV-R 464
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
MG P + L + +A+E++E +ER C Y +++ G
Sbjct: 465 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHG 515
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/310 (20%), Positives = 123/310 (39%), Gaps = 48/310 (15%)
Query: 63 NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLA 119
+PN ++ + + +R+ E+LES + R S I Y L+ L + A
Sbjct: 188 SPNVITYSVLIDGLCKANRVSQAVELLES-MKARGCSPDVITYTILVD-GLCKESKVAAA 245
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNY 176
+L+ L +GCVP L+ ++ L C+++ V+D L M+ + G P+ T
Sbjct: 246 WEVLREMLDAGCVP----NLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGT 301
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ LC + ++ +A +L M PDL Y+++I + A + ++++ +++ V +
Sbjct: 302 LIDGLCKVGRVKDACAMLADMIDKGGTPDLMIYNMLINGLCKADQVDESIALLRRAV-SG 360
Query: 237 GLMPRQGMVIKVAAAL-RANR----------------------------------EMWKA 261
G+ P V L R+NR ++ +A
Sbjct: 361 GIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGKVDEA 420
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
++ E + GC Y +++G + A + M G P +++G
Sbjct: 421 FDLYEVMAGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKG 480
Query: 322 LAGVGEWKLA 331
L + A
Sbjct: 481 LCDLNHLDEA 490
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/239 (19%), Positives = 101/239 (42%), Gaps = 8/239 (3%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
+ R P + +L L + + A+ +L+ GC P ++ + ++ C+
Sbjct: 183 MDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSP----DVITYTILVDGLCK 238
Query: 152 SQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
VA ++L EM G P+ T N L+ LC ++ +A +++ M+ C P++ +
Sbjct: 239 ESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALMRDMTCRGCTPNVVT 298
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y +I + + DA M+ +M+ + G P + + L ++ +++ ++
Sbjct: 299 YGTLIDGLCKVGRVKDACAMLADMI-DKGGTPDLMIYNMLINGLCKADQVDESIALLRRA 357
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G Y V+ G A + ++ + RG P + + +++GL G+
Sbjct: 358 VSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYSTLIDGLCKAGK 416
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 48/92 (52%), Gaps = 3/92 (3%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C++ V + +L M +G P T N L+ LC ++ L EA ++++ M
Sbjct: 440 STLIDGLCKAGRVDEAHLLLARMVRMGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMER 499
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
+ C P +Y+I+I M + + AV ++++
Sbjct: 500 SNCAPSAVTYNILIHGMCRMERVDSAVVLLEQ 531
Score = 41.2 bits (95), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 69/161 (42%), Gaps = 10/161 (6%)
Query: 132 VPVPQIRLLLSSAWLERRC------QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
+P+ Q + +A L C Q+Q D EM+S P+ C+ L+ LC
Sbjct: 2 LPICQPDVYTYAALLRGFCRGGEIDQAQRCFD---EMRSKNLVPNVFLCSILIDGLCKAK 58
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+ ++A + + M + V D Y+ ++ + ++ + A+ ++ EM + G P
Sbjct: 59 RSIDALRCFRAMQGSGIVADTVIYTALLSGLWKEKRLDQALAILHEM-RDHGCEPNVVTY 117
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L N E +A E+ E ++ C Y +++G
Sbjct: 118 NSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDG 158
>gi|242032205|ref|XP_002463497.1| hypothetical protein SORBIDRAFT_01g000800 [Sorghum bicolor]
gi|241917351|gb|EER90495.1| hypothetical protein SORBIDRAFT_01g000800 [Sorghum bicolor]
Length = 374
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VPD +YS V+ A++ A DAV ++ EMV++ G++ + + A LRA ++ A
Sbjct: 194 VPDKFTYSTVVSALADAGWVEDAVALVHEMVVD-GVVSAEAFNPVLRAMLRAG-DVNGAA 251
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ F++ KGC + Y V++ G L C + A + M G +P + VV+GL
Sbjct: 252 KLFRFMQLKGCTLTAVTYNVLLHGLLLCGKARAAMNIMRRMENEGIVPGLMTYGAVVDGL 311
Query: 323 AGVGE----WKLA 331
G WK+A
Sbjct: 312 VKCGRVEDAWKVA 324
>gi|302776342|ref|XP_002971343.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
gi|300161325|gb|EFJ27941.1| hypothetical protein SELMODRAFT_411983 [Selaginella moellendorffii]
Length = 584
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/223 (25%), Positives = 95/223 (42%), Gaps = 7/223 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL IL L SG P Q L + + A L M+ G HPD T ++
Sbjct: 78 ALLILATMLHSGTPPPNQHAFASLIDALSKSTRLADAARALELMRDAGIHPDVVTFTVMI 137
Query: 179 SSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
C + A ++ + M S C PD Y ++I + + A+E+++EM +
Sbjct: 138 RGFCKNRMMERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKELRMDRALELLREMRVERR 197
Query: 238 LMPRQGMVIKVAAAL-RANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ P + + L R+NR E WK ++ E + +GC Y ++ G + ++
Sbjct: 198 IQPDVVIYNSIVDGLCRSNRFLEAWKFLD--ETMVLQGCSPTVVTYTSLIRGACKAKKMK 255
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
LA + M ER P I +++GL+ G + VVR+
Sbjct: 256 LAVRIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVRE 298
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 70/169 (41%), Gaps = 11/169 (6%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK G P+ T L+ + C D+ E A L C D+ Y+ V+ + R+
Sbjct: 334 MKRSGAFPNQRTYATLIDTFCRNDR-TETALGLFDHIRDYCPLDVAMYTAVVSGLCRERR 392
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQG 279
+DA + +EM L + + A R+ R E ++ +E E + GC
Sbjct: 393 LDDARALFREMRLAGVSADTHAYNVLLHGAFRSERPEEAFRILE--ELGDDPGCVANLLT 450
Query: 280 YEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGE 327
Y V+ GC C E +G + M +RG P +++ L G GE
Sbjct: 451 YNTVIAGC--CLE---SGMVLFYEMRQRGIAPDFATYSALIDRLLGSGE 494
>gi|297832318|ref|XP_002884041.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297329881|gb|EFH60300.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 874
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 66/259 (25%), Positives = 110/259 (42%), Gaps = 55/259 (21%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S+ + A ++LQ +R+ C+P +LL S W R ++L +M GY D
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWNMGRISE--AEELLRKMNEKGYGLD 465
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGM----SSA-------------------ECVPDLE 207
TCN +V LC +L +A +++KGM S+A C+PDL
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA 254
+YS ++ + A + +A + EM + L P +QG K+++A R
Sbjct: 526 TYSTLLNGLCKAGRFAEAKTLFAEM-MGEKLQPDSLAYNIFIHHFCKQG---KISSAFRV 581
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIK 313
++M E+KGC + Y ++ G L + I +M M E+G P I
Sbjct: 582 LKDM----------EKKGCHKSLETYNSLILG-LGIKNQIFEIHGLMDEMREKGISPNIC 630
Query: 314 VRQKVVEGLAGVGEWKLAT 332
++ L G+ + AT
Sbjct: 631 TYNTAIQYLCEGGKVEDAT 649
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 85/189 (44%), Gaps = 2/189 (1%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ ++ EM+ G P+ T N + LC ++ +A +L M P++ S+ +IG
Sbjct: 613 IHGLMDEMREKGISPNICTYNTAIQYLCEGGKVEDATNLLDEMMQKNIAPNVFSFKYLIG 672
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
A + A E+ + V G ++G+ + L A ++ KA E++E + +G
Sbjct: 673 AFCKVPDFDMAQEVFETAVSICG--QKEGLYSLMFNELLAAGQLLKATELLEAVLDRGFE 730
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+G Y+ +V + E +A + M ++G+ V++GL +G K A
Sbjct: 731 LGTFLYKDLVVSLCKKDELEVASGILHKMIDKGYGFDPAALMPVIDGLGKMGNKKEANNF 790
Query: 335 RQRFAELKS 343
++ E+ S
Sbjct: 791 AEKMMEMAS 799
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M+S G P+ N +VSS C + ++ K+++ M VPD+ +++ I A+
Sbjct: 203 ELLNSMESFGVLPNKVVYNTIVSSFCREGRNDDSEKLVEKMREEGLVPDIVTFNSRISAL 262
Query: 217 STARKTNDAVEMMKEMVLNMGL-MPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGC 273
K DA + +M L+ L +PR + + + A + E +
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Q Y + ++G + ++I A + M ++G P I +++GL +G
Sbjct: 323 LVSLQSYNIWLQGLVRHGKFIEAETVLKQMIDKGIGPSIYSYNILMDGLCKLG 375
>gi|18397002|ref|NP_566237.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207286|sp|Q9SR00.1|PP213_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g04760, chloroplastic; Flags: Precursor
gi|6175176|gb|AAF04902.1|AC011437_17 hypothetical protein [Arabidopsis thaliana]
gi|15810359|gb|AAL07067.1| unknown protein [Arabidopsis thaliana]
gi|22136960|gb|AAM91709.1| unknown protein [Arabidopsis thaliana]
gi|332640611|gb|AEE74132.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 602
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYH 168
+L +P A+ +++ + G Q + +A + C+ + D +L M+S +
Sbjct: 136 TLRNIPKAVRVMEILEKFG-----QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N ++ SLC+ +L A KVL + S C P + +Y+I+I A ++A+++
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M EM L+ GL P + + + +A EM+ LE KGC Y +++ L
Sbjct: 251 MDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 289 E 289
Sbjct: 310 N 310
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 52 ELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLS 107
LL +E P+ +S+ ++ F + R+ V E LE+ I P I Y+ +L+
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLA 411
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
TL AL I + GC P + S+ W ++LEM S G
Sbjct: 412 -TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW--SSGDKIRALHMILEMMSNG 468
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++S LC + EA ++L M S E P + +Y+IV+ A + DA+
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528
Query: 227 EMMKEMVLNMGLMPRQ 242
+++ MV N G P +
Sbjct: 529 NVLESMVGN-GCRPNE 543
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 143/328 (43%), Gaps = 37/328 (11%)
Query: 25 LRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI-- 79
++ +LR + + VR + E+L F + P+ F++ ++ F + +RI
Sbjct: 131 IKGFFTLRNIPKAVR----------VMEILEKFGQ----PDVFAYNALINGFCKMNRIDD 176
Query: 80 --KVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VP 135
+V+D M + F P + Y+ ++ +L S L LAL +L + L C P V
Sbjct: 177 ATRVLDRMRSKDFSP------DTVTYNIMIG-SLCSRGKLDLALKVLNQLLSDNCQPTVI 229
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + LE ++ EM S G PD T N ++ +C + A ++++
Sbjct: 230 TYTILIEATMLEGGVDE--ALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ C PD+ SY+I++ A+ K + ++M +M + P + L +
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM-FSEKCDPNVVTYSILITTLCRD 346
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIK 313
++ +A+ +++ ++ KG Y+ ++ CRE L A + + M G +P I
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF--CREGRLDVAIEFLETMISDGCLPDIV 404
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341
V+ L G+ A + + E+
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEV 432
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M S P+ T + L+++LC ++ EA +LK M PD SY +I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+E ++ M+ + G +P V A L N + +A+E+ L GC
Sbjct: 380 REGRLDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y + + I A ++ M G P
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDP 471
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L++M+S +HP T N ++ C ++ +A VL+ M C P+ +Y+++I +
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Query: 217 STARKTNDAVEMMKEMV 233
A +A+E+ ++V
Sbjct: 554 GFAGYRAEAMELANDLV 570
>gi|357441367|ref|XP_003590961.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480009|gb|AES61212.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 573
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 76/291 (26%), Positives = 124/291 (42%), Gaps = 15/291 (5%)
Query: 58 EEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP-- 115
E C + N ++ L NF D L L +P + +L ++L SLH
Sbjct: 279 EGCCPDINMYNSLVNFSSKQG-NYKDTALVISNLLSHGMQPNVVTYNILIHSL-SLHGYS 336
Query: 116 --LPLALAILQRTLRSGCVPVPQIRL--LLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171
+ L I+ T S + I L L S +L+R + ++M S PD
Sbjct: 337 DVVDDILKIMNETSISPTLVTYNILLNSLCKSGFLDRS------ISLYIKMVSENCSPDI 390
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L+++LC + E+ ++L +S C P L +Y+IVI ++ R A EM E
Sbjct: 391 VTYNTLLNALCKEGFIDESIQLLHSLSGTNCSPGLVTYNIVINGLARMRSIKSAKEMYGE 450
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
MV G+ P + L + +AVE+ + + R G I Y+ V+ G E +
Sbjct: 451 MV-EKGIDPDYITHRTLVWGLCQVYQFEEAVEIFKVMHRIGQKIKGYAYKCVILGLCEQK 509
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ A + + M + P K+ +++ +A G A + QR ELK
Sbjct: 510 KLDSAIQALDLMVKAQCKPDGKIYYTLLKSVANEGMVNEANDLHQRLIELK 560
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 7/187 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IR L+ +++ C+ I+ M G PD T N ++ SLC L A + L+G
Sbjct: 152 IRGLIRIGQVDKGCK------IMNMMVMSGGVPDTITFNAVIGSLCKRGHLKSALEFLEG 205
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
MS + C+PD ++Y+ +I + N AV K+ L G P + + +
Sbjct: 206 MSLSGCLPDAKTYNTIIRCIFDKGDPNLAVSFWKDQ-LRKGFPPYLITYALLVELVCKHC 264
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+A+E++E + R+GC Y +V + Y + + G P +
Sbjct: 265 GASRALEVLEDMAREGCCPDINMYNSLVNFSSKQGNYKDTALVISNLLSHGMQPNVVTYN 324
Query: 317 KVVEGLA 323
++ L+
Sbjct: 325 ILIHSLS 331
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 6/181 (3%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ +++ M I + P +C L+ L I Q+ + K++ M + VPD +++ VIG
Sbjct: 132 LVEVMARMSQIPHFP---SCTNLIRGLIRIGQVDKGCKIMNMMVMSGGVPDTITFNAVIG 188
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
++ A+E ++ M L+ G +P + + + AV + RKG P
Sbjct: 189 SLCKRGHLKSALEFLEGMSLS-GCLPDAKTYNTIIRCIFDKGDPNLAVSFWKDQLRKGFP 247
Query: 275 IGFQGYEVVVE-GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y ++VE C C A + + M G P I + +V + G +K +
Sbjct: 248 PYLITYALLVELVCKHCGAS-RALEVLEDMAREGCCPDINMYNSLVNFSSKQGNYKDTAL 306
Query: 334 V 334
V
Sbjct: 307 V 307
>gi|302762673|ref|XP_002964758.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
gi|300166991|gb|EFJ33596.1| hypothetical protein SELMODRAFT_82857 [Selaginella moellendorffii]
Length = 552
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 61/273 (22%), Positives = 121/273 (44%), Gaps = 13/273 (4%)
Query: 56 SFEEACQNPNPFSFLSNFPQNHRIKVIDE---MLESFIPLRPRSRPKIAYDYLLSYTLQS 112
+ E C+ PN ++ + ++ +DE +L + L R+ + Y ++ L+
Sbjct: 234 ALERGCR-PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANT-VTYSTVVDGLLK- 290
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
+ + A+ +L++ +GC+P L + +R+ ++V +L EM G+HP
Sbjct: 291 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG-LLREMLEAGFHPSVV 349
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L LC + EA ++L M++ C P+ +YS ++ + A + +A+ ++M
Sbjct: 350 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 409
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE---RKGCPIGFQGYEVVVEGCLE 289
+ + P VI +A + + K E EFLE R G + +++ G +
Sbjct: 410 ARDEVVAPH---VIAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 466
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ GM ERG +P + +V+ L
Sbjct: 467 AGRIDTGLELFRGMAERGCVPDMVTYATLVDRL 499
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 93/209 (44%), Gaps = 8/209 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
+V+DEM L P I ++ +L + L A + +R L GC P V
Sbjct: 191 FRVVDEMFMIESGLSP---DVITFNSVLDGLCKEQRILD-AHNVFKRALERGCRPNVVTY 246
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+ L + + +L +M +G + T + +V L + ++ +A VL+ M
Sbjct: 247 STLIDG--LSKMAKMDEALQLLAKMVELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQM 304
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
A C+PD +Y+ +I ++ +AV +++EM L G P + L +
Sbjct: 305 RDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM-LEAGFHPSVVTYTTLCHGLCRSGR 363
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+AVE+++++ +GC Y +V+G
Sbjct: 364 FDEAVEILDYMAARGCAPNAITYSSIVDG 392
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 93/215 (43%), Gaps = 4/215 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI--GYHPDCGTCNY 176
A ++L++ +GC P I L L + + ++ ++ EM I G PD T N
Sbjct: 155 AFSLLEQMAANGCPP-ELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNS 213
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ LC ++++A V K C P++ +YS +I +S K ++A++++ +MV +
Sbjct: 214 VLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMV-EL 272
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G V L M AV ++ + GC Y +++G + + A
Sbjct: 273 GCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREA 332
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M E GF P + + GL G + A
Sbjct: 333 VGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEA 367
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 34/143 (23%), Positives = 69/143 (48%), Gaps = 8/143 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL ++ R V P + + SA ++ C++ + + L M G PD T +
Sbjct: 402 ALGYFEKMARDEVVA-PHV--IAYSALIDGLCKAGKIDEAYEFLERMIRAGRIPDVVTFS 458
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC ++ ++ +GM+ CVPD+ +Y+ ++ + A + ++A ++ ++M +
Sbjct: 459 ILINGLCDAGRIDTGLELFRGMAERGCVPDMVTYATLVDRLCRASRVDEAFDLFQQMRSD 518
Query: 236 MGLMP-RQGMVIKVAAALRANRE 257
GL P R + L NR+
Sbjct: 519 -GLSPDRSTRRTMIHGLLEVNRD 540
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ V +L EM G P+ T N LV++L + EA +L+ M++
Sbjct: 105 STLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAA 164
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-VLNMGLMPRQGMVIKVAAALRANREM 258
C P+L ++ ++I + + A ++ EM ++ GL P V L + +
Sbjct: 165 NGCPPELITFGLIIKGLCKEGEIEAAFRVVDEMFMIESGLSPDVITFNSVLDGLCKEQRI 224
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A + + +GC Y +++G + + A + + M E G V
Sbjct: 225 LDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRANTVTYSTV 284
Query: 319 VEGLAGVGEWKLATVV 334
V+GL VG + A VV
Sbjct: 285 VDGLLKVGRMEDAVVV 300
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 83/187 (44%), Gaps = 19/187 (10%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G+ P T + L+ LC ++ + K+L+ M+ C P+ +Y+ ++ A+ ++ +
Sbjct: 95 FGFRPTVVTYSTLIDGLCRDHEVDKGCKLLEEMAGRGCAPNAVTYNTLVNALLGQGRSKE 154
Query: 225 AVEMMKEMVLNMGLMPRQ---GMVIK-------VAAALRANREMWKAVEMIEFLERKGCP 274
A ++++M N G P G++IK + AA R EM+ MIE G
Sbjct: 155 AFSLLEQMAAN-GCPPELITFGLIIKGLCKEGEIEAAFRVVDEMF----MIE----SGLS 205
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ V++G + + + A ERG P + +++GL+ + + A +
Sbjct: 206 PDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLSKMAKMDEALQL 265
Query: 335 RQRFAEL 341
+ EL
Sbjct: 266 LAKMVEL 272
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 40/193 (20%), Positives = 79/193 (40%), Gaps = 4/193 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V + +M +PD T L+ L ++ EA + + + C P +
Sbjct: 6 CKSRKVDKAITLFKQMVDKAIYPDVVTYGALIDGLGKQRRVKEAYDLFEEARAKGCHPTV 65
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I + + +A+ + +M ++ G P + L + E+ K +++E
Sbjct: 66 VTYNTMIDGLCKCGRIENALTLYDDMAIHFGFRPTVVTYSTLIDGLCRDHEVDKGCKLLE 125
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ +GC Y +V L A + M G P + +++GL G
Sbjct: 126 EMAGRGCAPNAVTYNTLVNALLGQGRSKEAFSLLEQMAANGCPPELITFGLIIKGLCKEG 185
Query: 327 EWKLA-TVVRQRF 338
E + A VV + F
Sbjct: 186 EIEAAFRVVDEMF 198
>gi|259489858|ref|NP_001159344.1| uncharacterized protein LOC100304439 [Zea mays]
gi|223943533|gb|ACN25850.1| unknown [Zea mays]
Length = 322
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 89/225 (39%), Gaps = 2/225 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A L G P + R LL L R + L M G PD T N L
Sbjct: 99 AQAFLDDMAGRGLRPPVRGRDLLVDG-LVRAGHLEQAKAFALRMTKEGILPDVATFNSLA 157
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC + A +L SS PD+ +Y +++ A++ K +A + V + G
Sbjct: 158 EALCNAGDVDFAVSLLADASSRGLCPDISTYKVMLPAVAKVGKIEEAFRLFYAAVED-GH 216
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + AL A ++ KG P Y ++V+ C+ ++ A
Sbjct: 217 RPFPSLYAAIIKALCKAGRFADAFAFFGDMKTKGHPPNRPVYVMLVKMCVRGGRFVEAAN 276
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
++ M+E GF P VV+GL G+ LA + Q LK
Sbjct: 277 YLVEMSEAGFTPRAPTFSAVVDGLRHCGKHDLARRLEQLEVSLKG 321
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 92/232 (39%), Gaps = 19/232 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ + R R GC ++ +A L+ C + + +L M G PD T +
Sbjct: 29 AVEVFNRLPRFGCPQTTEV----YNALLDALCANGNFTGAYKLLRRMARKGVAPDRATFS 84
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV S CA +L EA L M+ P + +++ + A +E K L
Sbjct: 85 TLVDSWCAAGKLQEAQAFLDDMAGRGLRPPVRGRDLLVDGLVRAGH----LEQAKAFALR 140
Query: 236 M---GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECR 291
M G++P +A AL ++ AV ++ +G CP Y+V++ +
Sbjct: 141 MTKEGILPDVATFNSLAEALCNAGDVDFAVSLLADASSRGLCP-DISTYKVMLPAVAKVG 199
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ A + E G P+ + +++ L G + A F ++K+
Sbjct: 200 KIEEAFRLFYAAVEDGHRPFPSLYAAIIKALCKAGRFADAFAF---FGDMKT 248
>gi|224079730|ref|XP_002305930.1| predicted protein [Populus trichocarpa]
gi|222848894|gb|EEE86441.1| predicted protein [Populus trichocarpa]
Length = 470
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 71/153 (46%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ M + G P+ T L+ C L +A ++ + M S P+L Y+I++ AM
Sbjct: 311 DLFKNMHTNGNLPNLYTYAILLDGFCKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAM 370
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ DA E+ E+ + +GL P + + L + +A+E +E GCP
Sbjct: 371 CKSGNLKDARELFSELFV-IGLQPNVQIYTTIINGLCKEGLLDEALEAFRNMEDDGCPPD 429
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L+ ++ A + M +RGFI
Sbjct: 430 EFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFI 462
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 98/239 (41%), Gaps = 19/239 (7%)
Query: 103 DYLLSYTLQSLHPL---PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA--- 156
DY + + L + LA + ++ +GC Q+ ++ S + C+ + V
Sbjct: 80 DYTYTTIINGLCKIGETALAAGLFKKMEEAGC----QLNVVTYSTLIHSLCKYRRVNEAL 135
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DI MK+ P T L+ LC + EA+ +L M+S +P++ ++++++
Sbjct: 136 DIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSLNIMPNVVTFNVLVDTF 195
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV----EMIEFLERKG 272
K A ++K M MG+ P + +L MW V ++ + + KG
Sbjct: 196 CKEGKVLAAEGVLKTMT-EMGVEPD----VVTYNSLMYGYSMWTEVVEARKLFDVMITKG 250
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
C Y +++ G + + A + M +G P ++ GL +G + A
Sbjct: 251 CKPDVFSYSILINGYCKAKRIDEAKQLFNEMIHQGSTPNNVSYNTLIHGLCQLGRLREA 309
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 82/186 (44%), Gaps = 8/186 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M +G PD T N L+ ++VEA K+ M + C PD+ SYSI+I
Sbjct: 207 VLKTMTEMGVEPDVVTYNSLMYGYSMWTEVVEARKLFDVMITKGCKPDVFSYSILINGYC 266
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A++ ++A ++ EM+ + G P + L + +A ++ + + G
Sbjct: 267 KAKRIDEAKQLFNEMI-HQGSTPNNVSYNTLIHGLCQLGRLREAQDLFKNMHTNGNLPNL 325
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y ++++G C++ L A + M P + + +V + G K A R
Sbjct: 326 YTYAILLDGF--CKQGYLGKAFRLFRAMQSTYLKPNLVMYNILVNAMCKSGNLKDA---R 380
Query: 336 QRFAEL 341
+ F+EL
Sbjct: 381 ELFSEL 386
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 66/181 (36%), Gaps = 1/181 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G P+ T N L++ C + ++ VL P + +++ +I + K
Sbjct: 1 MELAGLSPNTCTLNILINCFCQLQRVDLGFSVLAKGIKLGLQPTIVTFTTLINGLGKVGK 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
AVE+ +MV G P + L E A + + +E GC + Y
Sbjct: 61 FAQAVELFDDMVAR-GCQPDDYTYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYS 119
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ + R A M + P I +++GL WK A+ + L
Sbjct: 120 TLIHSLCKYRRVNEALDIFSYMKAKDISPTIFTYTSLIQGLCNFSRWKEASALLNEMTSL 179
Query: 342 K 342
Sbjct: 180 N 180
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 57/120 (47%), Gaps = 1/120 (0%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L + L ++L + ++ G P L + L + + ++ +M + G PD
Sbjct: 23 LQRVDLGFSVLAKGIKLGLQPTIVTFTTLING-LGKVGKFAQAVELFDDMVARGCQPDDY 81
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +++ LC I + AA + K M A C ++ +YS +I ++ R+ N+A+++ M
Sbjct: 82 TYTTIINGLCKIGETALAAGLFKKMEEAGCQLNVVTYSTLIHSLCKYRRVNEALDIFSYM 141
>gi|224097576|ref|XP_002310993.1| predicted protein [Populus trichocarpa]
gi|222850813|gb|EEE88360.1| predicted protein [Populus trichocarpa]
Length = 877
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 90/206 (43%), Gaps = 4/206 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I RSGC+P L +E+R Q + +IL EM G PD T ++
Sbjct: 572 ALEIFDMMRRSGCIPTVHTFNALVLGLVEKR-QMEKAVEILDEMALAGVSPDEHTYTTIM 630
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ A+ +A + + + D+ +Y ++ A + + A+ + +EM
Sbjct: 631 NGYAALGDTGKAFEYFTKLRNEGLELDVFTYEALLKACCKSGRMQSALAVTREMSAQN-- 688
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR V + A R ++W+A ++++ ++++G Y + C + + + A
Sbjct: 689 IPRNTFVYNILIDGWARRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRAT 748
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLA 323
KT+ M G P +K ++ G A
Sbjct: 749 KTIQEMEALGVKPNVKTYTTLIHGWA 774
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 92/218 (42%), Gaps = 7/218 (3%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++ T V V+ + ++ E+L A +P+ ++ + + + E F
Sbjct: 587 TVHTFNALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGDTGKAFEYF 646
Query: 90 IPLRPRSR--PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ-IRLLLSSAWL 146
LR Y+ LL +S + ALA+ R + + +P + +L W
Sbjct: 647 TKLRNEGLELDVFTYEALLKACCKSGR-MQSALAV-TREMSAQNIPRNTFVYNILIDGWA 704
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
RR AD++ +MK G PD T +++ C ++ A K ++ M + P++
Sbjct: 705 -RRGDVWEAADLMQQMKQEGVQPDIHTYTSFINACCKAGDMLRATKTIQEMEALGVKPNV 763
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
++Y+ +I + A A+ +EM L GL P + +
Sbjct: 764 KTYTTLIHGWACASLPEKALRCFEEMKL-AGLKPDKAV 800
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 35/177 (19%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ + P T ++ ++ A ++ M + C+P + +++ ++ + R
Sbjct: 543 EMQKKRHRPTSRTFMPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTFNALVLGLVEKR 602
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ AVE++ EM L G+ P + + A + KA E L +G + Y
Sbjct: 603 QMEKAVEILDEMAL-AGVSPDEHTYTTIMNGYAALGDTGKAFEYFTKLRNEGLELDVFTY 661
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
E +++ C + A M+ + V +++G A G+ W+ A +++Q
Sbjct: 662 EALLKACCKSGRMQSALAVTREMSAQNIPRNTFVYNILIDGWARRGDVWEAADLMQQ 718
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+S G + T + L++ + A V + + PD+ Y+ +I A
Sbjct: 474 MESAGIKHNMKTYSMLINGFLKLKDWTNAFTVFEDVIKDGLKPDVVLYNNIIKAFCGMGN 533
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A+ M+KEM + + + RA EM +A+E+ + + R GC +
Sbjct: 534 MDRAIHMVKEMQKKRHRPTSRTFMPIIHGFARAG-EMRRALEIFDMMRRSGCIPTVHTFN 592
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G +E R+ A + + M G P ++ G A +G+
Sbjct: 593 ALVLGLVEKRQMEKAVEILDEMALAGVSPDEHTYTTIMNGYAALGD 638
>gi|357121285|ref|XP_003562351.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 624
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 91/216 (42%), Gaps = 33/216 (15%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
ALA+L CVP+P + ++ +E C+S S +L + + G D G CN
Sbjct: 135 ALAVLDEMTSRSCVPIPPMYHVI----IESACRSGGYSSALRVLEALHAKGSTLDTGNCN 190
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++++C + E ++L+ + C D+ SY+ V+ + A++ D E+M EMV
Sbjct: 191 LVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDVEELMDEMV-- 248
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
K E + + + GC + Y +++G + + +
Sbjct: 249 ------------------------KVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEV 284
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P + V++G+ W+ A
Sbjct: 285 ANEILSRMPSYGLKPNVVCYNTVLKGICSADRWEKA 320
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 79/180 (43%), Gaps = 4/180 (2%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ+ V ++L +M G PD T +++ C + EA +LK M S C P+
Sbjct: 347 CQNGLVDRVIELLEQMLEHGCMPDVITYTTVINGFCKEGLIDEAVMLLKNMPSCGCKPNT 406
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+IV+ + + + DA E+M M+ G +P + L + +A+E+++
Sbjct: 407 ISYTIVLKGLCSTERWVDAEELMSRMI-QQGCLPNPVTFNTIINFLCKKGLVEQAIELLK 465
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ GC Y V++G + + A + + M +G P + + LA G
Sbjct: 466 QMLVNGCNPDLISYSTVIDGLGKAGKTEEALELLNVMINKGITPNVITYSSMAFALAREG 525
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 72/172 (41%), Gaps = 11/172 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+V LC ++ +A VL M+S CVP Y ++I + + + A+ ++ E +
Sbjct: 122 VVRGLCGRGRIADALAVLDEMTSRSCVPIPPMYHVIIESACRSGGYSSALRVL-EALHAK 180
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR---- 291
G G V A+ + + +EM+ L GC Y V++G C R
Sbjct: 181 GSTLDTGNCNLVINAICDQGCVDEGLEMLRKLPLFGCEADIVSYNAVLKGLCAAKRWGDV 240
Query: 292 -----EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
E + + + M + G P I++ +++G+ G ++A + R
Sbjct: 241 EELMDEMVKVHEALSQMAQHGCTPDIRMYATIIDGICKEGHHEVANEILSRM 292
>gi|6633861|gb|AAF19720.1|AC008047_27 F2K11.2 [Arabidopsis thaliana]
Length = 332
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 94/222 (42%), Gaps = 10/222 (4%)
Query: 119 ALAILQRTLRSGCVPVP------QIRLLLSSAWLERRCQSQS---VADILLEMKSIGYHP 169
ALA++ R + G P + +++S+A ++R C+ + ++ EM G P
Sbjct: 29 ALALVDRMVEEGHQPNAMGQSHIKADVVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFP 88
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ T N ++ S C + +A ++L+ M + PD+ ++S +I A RK ++A E+
Sbjct: 89 NVLTYNCMIDSFCHSGRWSDADQLLRHMIEKQINPDIVTFSALINAFVKERKVSEAEEIY 148
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
KEM L + P + + A M++ + KGC + ++ G +
Sbjct: 149 KEM-LRWSIFPTTITYNSMIDGFCKQDRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCK 207
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M RG + ++ G VG+ A
Sbjct: 208 AKRVDNGMEIFCEMHRRGIVANTVTYTTLIHGFCQVGDLDAA 249
>gi|147865347|emb|CAN84084.1| hypothetical protein VITISV_018999 [Vitis vinifera]
Length = 561
Score = 62.0 bits (149), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 83/189 (43%), Gaps = 1/189 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + ++ M+ G P+ N L+S+ + E K M S+ C P+
Sbjct: 315 LGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPN 374
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y+ +I A ARK DA+EM+ EMV G++P G + L A+ +
Sbjct: 375 MDTYTKLIVAFLKARKVADALEMLDEMV-GRGMIPTTGAITSFIEPLCQYGPPHAAMMIY 433
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y++++ + + M E G+ +V + V+ GL +
Sbjct: 434 KKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 493
Query: 326 GEWKLATVV 334
G+ A +V
Sbjct: 494 GQLDTAVLV 502
>gi|414874000|tpg|DAA52557.1| TPA: hypothetical protein ZEAMMB73_743775 [Zea mays]
Length = 630
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VPD +YS V+ A++ A +AV ++ EMV++ G++ + + A LRA ++ AV
Sbjct: 194 VPDKFTYSTVVSALADAGCVEEAVALVHEMVVD-GVVSAEAFNPVLKAMLRAG-DVNGAV 251
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ F++ KGC + Y V++ G L C E A + M G +P + VV+GL
Sbjct: 252 KLFRFMQLKGCTLTAVTYNVLLHGLLLCGEARAAMNIMRRMENEGIVPGLMTYGAVVDGL 311
Query: 323 AGVGE----WKLA 331
G WK+A
Sbjct: 312 VKCGRVEDAWKVA 324
>gi|242062936|ref|XP_002452757.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
gi|241932588|gb|EES05733.1| hypothetical protein SORBIDRAFT_04g031880 [Sorghum bicolor]
Length = 502
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 57/257 (22%), Positives = 104/257 (40%), Gaps = 46/257 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH-----PDCGT 173
AL IL++ + SG P ++ + R Q Q D L+MK G + PD +
Sbjct: 229 ALDILRQMVESGIAPTKTTYNIILKGFF-RSGQLQHAWDFFLQMKKRGSNDENCKPDVVS 287
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L QL +A KV MS C P + +Y+ +I DAV + +M+
Sbjct: 288 YTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNALIQVTCKKGNVEDAVAVFDDMI 347
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV-----EGCL 288
G +P + L ++ +A+++++ ++R+GC Q Y V++ EG +
Sbjct: 348 -RKGYIPNVVTYTVLIRGLCHAGKIDRAMKLLDKMKREGCEPNVQTYNVLIGYLFEEGDI 406
Query: 289 E----------------------------------CREYILAGKTVMGMTERGFIPYIKV 314
E + +A + V+ M +RG++P +
Sbjct: 407 EKALHLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPRRFM 466
Query: 315 RQKVVEGLAGVGEWKLA 331
+V+ GL G +L+
Sbjct: 467 FNRVLNGLMLTGNQELS 483
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 4/165 (2%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA- 225
+ PD T N L C + A +L+ M + P +Y+I++ + + A
Sbjct: 206 FPPDAVTYNTLADGWCRVKDTSRALDILRQMVESGIAPTKTTYNIILKGFFRSGQLQHAW 265
Query: 226 ---VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++M K + P V L ++ KA ++ + + R+GC Y
Sbjct: 266 DFFLQMKKRGSNDENCKPDVVSYTTVLHGLGVAGQLDKARKVFDEMSREGCTPSIATYNA 325
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+++ + A M +G+IP + ++ GL G+
Sbjct: 326 LIQVTCKKGNVEDAVAVFDDMIRKGYIPNVVTYTVLIRGLCHAGK 370
>gi|115477391|ref|NP_001062291.1| Os08g0525500 [Oryza sativa Japonica Group]
gi|42761404|dbj|BAD11569.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113624260|dbj|BAF24205.1| Os08g0525500 [Oryza sativa Japonica Group]
Length = 182
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 46/175 (26%), Positives = 76/175 (43%), Gaps = 1/175 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T N L +LC+ + A +L SS PD+ +Y ++I A++ A +
Sbjct: 1 MTKEGVLPDVATFNSLAEALCSSGDVEFAVALLADASSRGLCPDISTYKVMIPAVAKAGR 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A + L G P + + AL A ++ KG P Y
Sbjct: 61 IDEAFRLFYA-ALEDGHRPFPSLYAAIIKALCKAGRFADAFAFFGDMKSKGHPPNRPVYV 119
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
++V+ C+ ++ A ++ M+E GF P VV+GL G+ LA + Q
Sbjct: 120 MLVKMCVRGGRFVEAANYLVEMSEAGFAPRAPTFNSVVDGLRHCGKHDLAQRMEQ 174
>gi|326513918|dbj|BAJ92109.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 459
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 54/218 (24%), Positives = 90/218 (41%), Gaps = 2/218 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A L G P + R LL L R + + L + G PD T N L
Sbjct: 236 AQAFLDDMATRGFRPPVRGRDLLVDG-LVRAGRLEEAKAFALRITKEGVLPDVATFNSLA 294
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC + A +L SS PD+ +Y +++ A++ A + +A + + + G
Sbjct: 295 QALCDAGDVEFAVGLLADASSRGMCPDISTYKVMLPAVAKAGRIEEAFRLFYAAIED-GH 353
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + AL A ++ KG P Y ++V+ C+ ++ A
Sbjct: 354 RPFPSLYAAIVKALCKAGRFADAFAFFGDMKSKGHPPNRPVYVMLVKMCVRGGRFLDAAN 413
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
++ M+E GF P VV+GL +G+ LA + Q
Sbjct: 414 YLLEMSEAGFAPRAPTFNVVVDGLRHLGKHDLARRMEQ 451
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 92/229 (40%), Gaps = 13/229 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ + R GC ++ +A L+ C + + A +L M G PD T +
Sbjct: 166 AVEVFNRLPHFGCPQTTEV----YNALLDALCANGNFAGAYKLLRRMARKGVAPDRATFS 221
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV + CA +L EA L M++ P + +++ + A + +A + +
Sbjct: 222 TLVDAWCASGKLREAQAFLDDMATRGFRPPVRGRDLLVDGLVRAGRLEEA-KAFALRITK 280
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYI 294
G++P +A AL ++ AV ++ +G CP Y+V++ +
Sbjct: 281 EGVLPDVATFNSLAQALCDAGDVEFAVGLLADASSRGMCP-DISTYKVMLPAVAKAGRIE 339
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
A + E G P+ + +V+ L G + A F ++KS
Sbjct: 340 EAFRLFYAAIEDGHRPFPSLYAAIVKALCKAGRFADAFAF---FGDMKS 385
>gi|449519270|ref|XP_004166658.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g19440, chloroplastic-like [Cucumis sativus]
Length = 799
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 80/180 (44%), Gaps = 2/180 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + G P TCN+ +SSL ++ + +V + MS C PD+ S++ VI A+
Sbjct: 172 DVFYLLARKGTFPSLKTCNFXLSSLVKANEFEKCCEVFRVMSEGAC-PDVFSFTNVINAL 230
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A+E+ +M +G+ P + L N + A E+ E + KG
Sbjct: 231 CKGGKMENAIELFMKME-KLGISPNVVTYNCIINGLCQNGRLDNAFELKEKMTVKGVQPN 289
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
+ Y ++ G ++ + + M GF P + V +++G +G + A ++
Sbjct: 290 LKTYGALINGLIKLNFFDKVNHILDEMIGAGFNPNVVVFNNLIDGYCKMGNIEGALKIKD 349
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 73/172 (42%), Gaps = 3/172 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N+L+ LC + +L +A K+ ++ + ++ +Y I++ A
Sbjct: 525 EMTKRGIQPDIYTYNFLLRGLCNVGKLDDAIKLWDEFKASGLISNIHTYGIMMEGYCKAN 584
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ D + E++ M +V + A N + A++++E ++ KG
Sbjct: 585 RIEDVENLFNELLSKK--MELNSIVYNIIIKAHCQNGNVAAALQLLENMKSKGILPNCAT 642
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G A + M + GF+P + ++ G +G+ A
Sbjct: 643 YSSLIHGVCNIGLVEDAKHLIDEMRKEGFVPNVVCYTALIGGYCKLGQMDTA 694
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 146 LERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ CQ+ +VA +L MKS G P+C T + L+ +C I + +A ++ M
Sbjct: 612 IKAHCQNGNVAAALQLLENMKSKGILPNCATYSSLIHGVCNIGLVEDAKHLIDEMRKEGF 671
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
VP++ Y+ +IG + + A EM+
Sbjct: 672 VPNVVCYTALIGGYCKLGQMDTAESTWLEMI 702
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 38/82 (46%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + LEM S HP+ T ++ C + + +A +L M + VPD+ +Y+
Sbjct: 690 QMDTAESTWLEMISFNIHPNKFTYTVMIDGYCKLGNMEKANNLLIKMKESGIVPDVVTYN 749
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
++ A ++A ++ +M
Sbjct: 750 VLTNGFCKANDMDNAFKVCDQM 771
>gi|302775071|ref|XP_002970952.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
gi|300161663|gb|EFJ28278.1| hypothetical protein SELMODRAFT_441328 [Selaginella moellendorffii]
Length = 698
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 63/236 (26%), Positives = 105/236 (44%), Gaps = 6/236 (2%)
Query: 98 PKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSV 155
P IA Y+ LL+ L + L A+ +L++ + +GC P V L+ E+R S
Sbjct: 292 PTIATYNALLN-GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR--SFEA 348
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ EM S G D L+ L ++ +A+ V K M+S CVPD+ + S +I
Sbjct: 349 YKLFKEMASRGLALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 408
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+S A + AV + K M GL P + + + L R+M A+EM+ +++ C
Sbjct: 409 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 467
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++++G + + A M E G P + ++ GL G A
Sbjct: 468 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGLCKAGNTDAA 523
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
Query: 119 ALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A ++ Q T +GC + + +++ WL + + Q ++ ++ + G P T N L
Sbjct: 243 AHSLAQETTTNGCTIDIHTYTAIVN--WLAKNKKIQEAVALMEKITANGCTPTIATYNAL 300
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ LC + +L EA +L+ + C PD+ +Y+ +I + +++ +A ++ KEM + G
Sbjct: 301 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMA-SRG 359
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L + L ++ +A + + + GC +++G + A
Sbjct: 360 LALDTVCYTALIRGLLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAV 419
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGL 322
+ M RG P V ++ GL
Sbjct: 420 RIFKSMEARGLAPNEVVYSALIHGL 444
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 45/93 (48%), Gaps = 3/93 (3%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+++ + ++L +MK PD T N L+ LC + A M
Sbjct: 438 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 497
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
A C PD+ +Y+I+I + A T+ A ++ +M
Sbjct: 498 AGCKPDVYTYNILISGLCKAGNTDAACGVLDDM 530
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 67/159 (42%), Gaps = 1/159 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G+ T N L+ + EA +LK + PD+E+++++I AR+ +
Sbjct: 113 FGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATIFRPDVETWNVLITGYCLAREPEE 172
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A +++EM + G+ P V L + ++ A++ E + R+ P+ + +++
Sbjct: 173 AFAVIREMEEDFGVAPSLKTHNLVLHGLCKSGKVLAAMDHFEAV-RRSMPVSAATFSILI 231
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
G ++ I A T G I +V LA
Sbjct: 232 NGLVKAGMMIQAHSLAQETTTNGCTIDIHTYTAIVNWLA 270
>gi|224145829|ref|XP_002325779.1| predicted protein [Populus trichocarpa]
gi|222862654|gb|EEF00161.1| predicted protein [Populus trichocarpa]
Length = 586
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 74/153 (48%), Gaps = 1/153 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ +M + GY PD T + L+ C L +A ++ + M P+L Y+I+I +M
Sbjct: 427 ELFKDMHTNGYLPDLCTYSVLLEGFCKQGYLGKAFRLFRAMQGTYLKPNLVMYTILIDSM 486
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ N A ++ E+ ++ GL P + + L + +A+E +E GCP
Sbjct: 487 CKSGNLNHARKLFSELFVH-GLQPDVQIYTTIINGLCKEGLLDEALEAFRKMEEDGCPPN 545
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
Y V++ G L+ ++ A + + M ++GF+
Sbjct: 546 EFSYNVIIRGFLQHKDESRAVQLIGEMRDKGFV 578
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 61/129 (47%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M +G P+ T N L+ ++VEA K+ M + C PD+ SYSI+I
Sbjct: 323 VLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEARKLFDVMITRGCKPDVFSYSILINGYC 382
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ ++A ++ EM+ + GL P + A ++ +A E+ + + G
Sbjct: 383 MVKRIDEAKQLFNEMI-HQGLTPNTVSYTTLIHAFCQLGKLREARELFKDMHTNGYLPDL 441
Query: 278 QGYEVVVEG 286
Y V++EG
Sbjct: 442 CTYSVLLEG 450
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 60/123 (48%), Gaps = 7/123 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
+ + L ++L + ++ G P ++ + + C++ A ++ +M + G P
Sbjct: 139 MQHVDLGFSVLAKVIKLGLQPT----IITFTTLINGLCKAGEFAQALELFDDMVARGCQP 194
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T +++ LC + + AA ++K M C PD+ +YS +I ++ R N+A+++
Sbjct: 195 DVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKDRLVNEALDIF 254
Query: 230 KEM 232
M
Sbjct: 255 SYM 257
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 49/232 (21%), Positives = 88/232 (37%), Gaps = 3/232 (1%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S + ALA L +P + Q LLS A + R +V + +M+ G P+
Sbjct: 67 SFRNIDDALASFNHMLHRKPLPCIIQFNKLLS-AIVRMRQYYDAVISLSKQMELAGLSPN 125
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N L++ C + + VL + P + +++ +I + A + A+E+
Sbjct: 126 TCTLNILINCFCLMQHVDLGFSVLAKVIKLGLQPTIITFTTLINGLCKAGEFAQALELFD 185
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+MV G P + L E A +I+ + GC Y +++ +
Sbjct: 186 DMVAR-GCQPDVYTYTTIINGLCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLIDSLCKD 244
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
R A M +G P + +++GL WK A+ + L
Sbjct: 245 RLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMTSLN 296
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 104/261 (39%), Gaps = 42/261 (16%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + GC P + + L + ++ + A ++ +M +G PD T + L+
Sbjct: 180 ALELFDDMVARGCQPDVYTYTTIING-LCKMGETAAAAGLIKKMGEVGCQPDVVTYSTLI 238
Query: 179 SSLCAIDQLV-EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
SLC D+LV EA + M + P + SY+ +I + + + +A M+ EM ++
Sbjct: 239 DSLCK-DRLVNEALDIFSYMKAKGISPTVVSYTSLIQGLCSFSRWKEASAMLNEMT-SLN 296
Query: 238 LMP-------------RQGMVIKVAAALRANREMW----------------------KAV 262
+MP ++G V++ L+ EM +A
Sbjct: 297 IMPDIVTFSLLIDIFCKEGNVLEAQGVLKTMTEMGVEPNVITYNSLMHGYSLQMEVVEAR 356
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ + + +GC Y +++ G + A + M +G P ++
Sbjct: 357 KLFDVMITRGCKPDVFSYSILINGYCMVKRIDEAKQLFNEMIHQGLTPNTVSYTTLIHAF 416
Query: 323 AGVGEWKLATVVRQRFAELKS 343
+G+ + A R+ F ++ +
Sbjct: 417 CQLGKLREA---RELFKDMHT 434
>gi|302791141|ref|XP_002977337.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
gi|300154707|gb|EFJ21341.1| hypothetical protein SELMODRAFT_107186 [Selaginella moellendorffii]
Length = 636
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/178 (27%), Positives = 85/178 (47%), Gaps = 9/178 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHP 169
L + +A + L+ +P ++ S +E C + V D +L EM + P
Sbjct: 370 LERIDMARTLFDDMLKQAVLP----DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 425
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T LV C + ++VEA +VLK M+ C P++ +Y+ +I A A K A +++
Sbjct: 426 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLL 485
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQGYEVVVEG 286
+EMV N G+ P + ++ +A +M+E LER + C Y V+++G
Sbjct: 486 EEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARKMLERLERDENCKADMFAYRVMMDG 542
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 117/269 (43%), Gaps = 21/269 (7%)
Query: 64 PNPFSF---LSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPL 116
PN +++ ++ F + H++ ++ EM ES + P + + + +
Sbjct: 40 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA------PNVVTYSTVIHGFCRQTKV 93
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGT 173
A + ++ + +GC+P L+ + L C++ ++L EM+ G PD +
Sbjct: 94 DTAYKLFRQMVENGCMP----NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 149
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ L++ LC ++ A KV + S+ +C PD+ +YS +I + + ++A ++ ++M
Sbjct: 150 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMR 209
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
N P + L + +A +++E +E + C Y +++G + +
Sbjct: 210 EN-SCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 268
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M RG P + ++ G
Sbjct: 269 RDAQEVFKRMIVRGIEPNVVTYNSLIHGF 297
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 16/236 (6%)
Query: 58 EEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RP-KIAYDYLLSYTLQSLHP 115
E C PN ++ + R ++DE E +R R +P K +YD L++ L
Sbjct: 105 ENGCM-PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMA-GLCKTGK 162
Query: 116 LPLALAILQRTLRSGCVP-----VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
+ +AL + + C P I L + L+ C+ + +M+ PD
Sbjct: 163 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACK------LFEKMRENSCEPD 216
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T L+ LC D+L EA +VL+ M C P++ +YS +I + + DA E+ K
Sbjct: 217 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 276
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
M++ G+ P + + A+ ++E + GC Y +++G
Sbjct: 277 RMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDG 331
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 1/180 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MK G P+ T N L++ C + ++ A +LK M + P++ +YS VI
Sbjct: 32 KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 91
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + A ++ ++MV N G MP + + L N M +A E+++ + +G Y
Sbjct: 92 KVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSY 150
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++ G + + +A K + P + ++ GL G A + ++ E
Sbjct: 151 DTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRE 210
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V LL EM + G PD T N L+ LC + EA ++ M + C PD+
Sbjct: 298 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 357
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +IG + + A + +M L ++P + + A ++E
Sbjct: 358 ITYSCLIGGFCKLERIDMARTLFDDM-LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 416
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ C Y +V+G + + A + + M +RG P + +++ G
Sbjct: 417 EMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 476
Query: 327 EWKLA 331
+ +A
Sbjct: 477 KPTVA 481
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 64/160 (40%), Gaps = 5/160 (3%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ LC ++L EA M VP+ +Y+++I K + A ++KEM
Sbjct: 13 MIDGLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK-ES 71
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL- 295
GL P V ++ A ++ + GC Y ++ G CR ++
Sbjct: 72 GLAPNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL--CRNGLMD 129
Query: 296 -AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A + + M ERG P ++ GL G+ +A V
Sbjct: 130 EAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 169
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 46/228 (20%), Positives = 91/228 (39%), Gaps = 8/228 (3%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
+H + A +L+ SG P ++ S + C+ V + +M G P
Sbjct: 55 VHKVHRAYLLLKEMKESGLAP----NVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMP 110
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ T N L+S LC + EA ++L M PD SY ++ + K + A+++
Sbjct: 111 NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKVF 170
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
++ N P + A L + +A ++ E + C + +++G +
Sbjct: 171 EDNS-NGDCPPDVVAYSTLIAGLCKTGRLDEACKLFEKMRENSCEPDVVTFTALMDGLCK 229
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
A + + M +R P + +++GL G+ + A V +R
Sbjct: 230 GDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFKR 277
>gi|302766715|ref|XP_002966778.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
gi|300166198|gb|EFJ32805.1| hypothetical protein SELMODRAFT_62477 [Selaginella moellendorffii]
Length = 480
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 58/216 (26%), Positives = 90/216 (41%), Gaps = 16/216 (7%)
Query: 119 ALAILQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A AI++ +G P Q IR S +R C S D +LE G P+
Sbjct: 13 AEAIVEEMKYAGFSPDVQSHCLLIRGFFKSGSFQRGC---SQLDRMLEA---GLFPNAIL 66
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N L+S LC L EA LK M C P++ SY+I+I AR A+ ++EM
Sbjct: 67 YNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARNIEKALAFLREME 125
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
+G P + + + KA+++ + KGC + V++ G R+
Sbjct: 126 -ELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKI 184
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A + M RG P + ++ AG+ +WK
Sbjct: 185 HEARELFRSMNSRGCKPDVVTYNTMI---AGLCKWK 217
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 96/212 (45%), Gaps = 16/212 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
ALA L+ G P P S+ ++ C++ +V+ D+ EM + G PD N
Sbjct: 117 ALAFLREMEELGHPPTPHA----YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFN 172
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV---EMMKEM 232
L+S L ++ EA ++ + M+S C PD+ +Y+ +I + +K ++AV E MK+
Sbjct: 173 VLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERMKQE 232
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV--VVEGCLEC 290
++ + ++ + R + +A E+ E + CP Y V ++ G +
Sbjct: 233 DVSPTFVTYTTLIDHLCKFAR----LQQAYEVFEKMAEGPCPCTEPAYSVLILINGLCKA 288
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R A + M RG P + ++EGL
Sbjct: 289 RRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 320
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 99/247 (40%), Gaps = 43/247 (17%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ + GC P + +LLS W R+ ++ M S G PD T N +
Sbjct: 152 AMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHE--ARELFRSMNSRGCKPDVVTYNTM 209
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS--------------------------- 210
++ LC +L EA +L+ M + P +Y+
Sbjct: 210 IAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFARLQQAYEVFEKMAEGPC 269
Query: 211 ----------IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
I+I + AR+ +A EM +EM G+ P + L + ++
Sbjct: 270 PCTEPAYSVLILINGLCKARRPGEAKEMFQEM-RGRGISPTVVTYNTLLEGLLSTAKLQD 328
Query: 261 AVEMIEF-LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A+E+ F L++ P F YE+++ + + A K + M ++GF+P +K+ + ++
Sbjct: 329 AMELTYFMLDQVPAPNMFT-YEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLL 387
Query: 320 EGLAGVG 326
LA G
Sbjct: 388 SRLARAG 394
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T L+SSLC DQ+ EA K+L M VP L+ + +++ ++ A + +DA E+
Sbjct: 343 PNMFTYEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAGRLDDAFEL 402
Query: 229 MKEM 232
KEM
Sbjct: 403 YKEM 406
>gi|302761712|ref|XP_002964278.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
gi|300168007|gb|EFJ34611.1| hypothetical protein SELMODRAFT_80975 [Selaginella moellendorffii]
Length = 331
Score = 61.6 bits (148), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 4/183 (2%)
Query: 146 LERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ER C+++ + D L EM + G PD N+++S LC +++ EA + + M
Sbjct: 16 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 75
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ +Y+ +I + A + A E+ KEM G +P + + +++ A
Sbjct: 76 NPNVVTYNTLINGLCKAWRIETAYELFKEMA-GKGYVPTEVSYNTLIDGFCKKKDLVAAK 134
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ + + R C Y +++G + + A + + GM ++G P + +++G
Sbjct: 135 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 194
Query: 323 AGV 325
V
Sbjct: 195 CKV 197
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L AW + ++ ++ EM GY P + N L+ C LV A V M +
Sbjct: 89 LCKAW-----RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 143
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
CVP++ +Y+ +I +S + K A E++ MV G+ P + R + +
Sbjct: 144 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV-KKGVTPNVATYSCLIDGFCKVRRVDE 202
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
A +++E + +G Y +++ + A K GM +R P +
Sbjct: 203 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 254
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L ++ G P + S ++ C+ + V + +L +M + G P T N
Sbjct: 168 AAEVLDGMVKKGVTP----NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYN 223
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L++SLC D+L +A K+ +GM+ C P + +Y+ ++ A+ ++ + A + EM+
Sbjct: 224 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMI 281
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
PN ++ + ++ +++ E+L+ + + P +A L + + A
Sbjct: 147 PNVVTYTTLIDGLSKSGKVQAAAEVLDGMV--KKGVTPNVATYSCLIDGFCKVRRVDEAH 204
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY---HPDCGTCNY 176
+L++ + G P V +LL+S C++ + D + + HP T N
Sbjct: 205 KLLEQMVTQGIAPTVVTYNILLNSL-----CRADKLEDAFKLFRGMAQRRCHPTVVTYNT 259
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC QL A ++ M + C PD +Y + ++ A K ++A E+M++M L
Sbjct: 260 LLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLT 318
>gi|302813417|ref|XP_002988394.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
gi|300143796|gb|EFJ10484.1| hypothetical protein SELMODRAFT_128001 [Selaginella moellendorffii]
Length = 388
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 4/182 (2%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C + IL M G PD T N L+S LC + + +A ++++ M A P+ +Y
Sbjct: 97 CNVRKAKGILELMIDSGCKPDVVTYNTLISGLCKVRRADDALQLMREMEPA---PNTITY 153
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ VI + +RK +A ++ EM+ ++G V A L +REM KAV++ ++
Sbjct: 154 NTVINGLWRSRKDTEAQALLDEMI-SVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMR 212
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+K C + +V+G L + AG T+ M G +K K++ L G +
Sbjct: 213 KKKCETDEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQ 272
Query: 330 LA 331
A
Sbjct: 273 KA 274
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R +Q +I M GY P + N L+ LC ++ A + + M E PD+ S
Sbjct: 268 RGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQEREIQPDVVS 327
Query: 209 YSIVIGAMSTARKTNDAVEMMKE 231
Y+ VI + AR+ ++A+++ ++
Sbjct: 328 YTTVIKGLCAARRIDEAIDLFRD 350
>gi|255561943|ref|XP_002521980.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538784|gb|EEF40384.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 584
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 67/287 (23%), Positives = 136/287 (47%), Gaps = 19/287 (6%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSR---PKIAYDYLLSYTLQSLHPLP 117
P+ F++ +S F + ++++ + +L+ R +SR P + ++ + S L
Sbjct: 136 PDVFAYNALISGFIKANQLENANRVLD-----RMKSRGFLPDVVTYNIMIGSFCSRGKLD 190
Query: 118 LALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
LAL I + L+ C P V +L+ + L+ +L EM S G PD T N
Sbjct: 191 LALEIFEELLKDNCEPTVITYTILIEATILDGGIDV--AMKLLDEMLSKGLEPDTLTYNA 248
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ +C + +A ++L+ +SS C PD+ +Y+I++ + + K ++ +++ EM+ ++
Sbjct: 249 IIRGMCKEMMVDKAFELLRSLSSRGCKPDIITYNILLRTLLSRGKWSEGEKLISEMI-SI 307
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE--YI 294
G P + L + ++ +AV ++ ++ KG Y+ ++ G CRE
Sbjct: 308 GCKPNVVTHSILIGTLCRDGKVEEAVNLLRSMKEKGLKPDAYCYDPLIAGF--CREGRLD 365
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
LA + + M G +P I ++ GL G+ A V ++ E+
Sbjct: 366 LATEFLEYMISDGCLPDIVNYNTIMAGLCRTGKADQALEVFEKLDEV 412
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 87/203 (42%), Gaps = 9/203 (4%)
Query: 48 QQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104
++ LL S +E P+ + + ++ F + R+ + E LE I P I
Sbjct: 330 EEAVNLLRSMKEKGLKPDAYCYDPLIAGFCREGRLDLATEFLEYMIS--DGCLPDIVNYN 387
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMK 163
+ L AL + ++ GC P V L S+ W +++L++
Sbjct: 388 TIMAGLCRTGKADQALEVFEKLDEVGCPPNVSSYNTLFSALW--SSGDRYRALEMILKLL 445
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
+ G PD T N L+S LC + EA ++L M S P++ SY+I++ + + N
Sbjct: 446 NQGIDPDEITYNSLISCLCRDGMVDEAIELLVDMQSGRYRPNVVSYNIILLGLCKVNRAN 505
Query: 224 DAVEMMKEMVLNMGLMPRQGMVI 246
DA+E++ M G P + I
Sbjct: 506 DAIEVLAAMT-EKGCQPNETTYI 527
>gi|242048586|ref|XP_002462039.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
gi|241925416|gb|EER98560.1| hypothetical protein SORBIDRAFT_02g013138 [Sorghum bicolor]
Length = 798
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 9/249 (3%)
Query: 97 RPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
RP Y+ +L + S +PLALA+ R + +GC+P +L L +R +
Sbjct: 170 RPTTFVYNAVLRVLVASGGVVPLALALYNRMVAAGCLPNRATYNVLMDG-LCKRGTAVDA 228
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ EM G P+ T L+SS+C QL EA +L M C PD +Y+ +
Sbjct: 229 LKLFDEMLQRGITPNVKTHTILLSSMCNAGQLKEAENLLNSMEDKGCPPDEVTYNAFLSG 288
Query: 216 MSTARKTNDAVEMMKEM----VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+ A + ++A+E ++ + +GL +G + A R +E LE+
Sbjct: 289 LCKAGRVDEAIERLEALRRTGTFVLGL---KGYSCLIDGLFLAGRYEEGFQCYMEVLEQA 345
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++ GC E A M E+ F P +++ L G+ A
Sbjct: 346 DFSPDIVLYTIMIRGCAEAGRIDDAFAFFDEMKEKRFTPDTFCYNTLLKALCDSGDLDGA 405
Query: 332 TVVRQRFAE 340
+ A+
Sbjct: 406 RSLMSEMAQ 414
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/105 (22%), Positives = 50/105 (47%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + LV S+C Q+++A K+L+G+ + VPD+ +Y+ ++ + R + A+ +
Sbjct: 503 DSESLQKLVDSMCQSGQVLKAYKLLRGIMDSGVVPDVVTYNTLLNGLCKVRNLDGALRLF 562
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+E+ + + + + LRA+R + L G P
Sbjct: 563 RELQVKGFSLDEITYGTLIDSLLRAHRYNDAMTLFQDILHIGGTP 607
>gi|145360025|ref|NP_179305.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|122223754|sp|Q0WPZ6.1|PP158_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17140
gi|110737729|dbj|BAF00803.1| hypothetical protein [Arabidopsis thaliana]
gi|330251496|gb|AEC06590.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 874
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 55/239 (23%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S+ + A ++LQ +R+ C+P +LL S W R ++L +M GY D
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE--AEELLRKMNEKGYGLD 465
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGM----SSA-------------------ECVPDLE 207
TCN +V LC +L +A +++KGM S+A C+PDL
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA 254
+YS ++ + A + +A + EM + L P +QG K+++A R
Sbjct: 526 TYSTLLNGLCKAGRFAEAKNLFAEM-MGEKLQPDSVAYNIFIHHFCKQG---KISSAFRV 581
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYI 312
++M E+KGC + Y ++ G L + I +M M E+G P I
Sbjct: 582 LKDM----------EKKGCHKSLETYNSLILG-LGIKNQIFEIHGLMDEMKEKGISPNI 629
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 11/254 (4%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI--RLLLSSAWLERR 149
L+P S +AY+ + + + + A +L+ + GC + L+L L +
Sbjct: 555 LQPDS---VAYNIFIHHFCKQ-GKISSAFRVLKDMEKKGCHKSLETYNSLILG---LGIK 607
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
Q + ++ EMK G P+ T N + LC +++ +A +L M P++ S+
Sbjct: 608 NQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSF 667
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+I A + A E+ + V G ++G+ + L A ++ KA E++E +
Sbjct: 668 KYLIEAFCKVPDFDMAQEVFETAVSICG--QKEGLYSLMFNELLAAGQLLKATELLEAVL 725
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+G +G Y+ +VE + E +A + M +RG+ V++GL +G K
Sbjct: 726 DRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKK 785
Query: 330 LATVVRQRFAELKS 343
A + E+ S
Sbjct: 786 EANSFADKMMEMAS 799
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M+S G P+ N +VSS C + ++ K+++ M VPD+ +++ I A+
Sbjct: 203 ELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262
Query: 217 STARKTNDAVEMMKEMVLNMGL-MPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGC 273
K DA + +M L+ L +PR + + + A + E +
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Q Y + ++G + ++I A + MT++G P I +++GL +G
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 145 WLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
WL+ R + +L +M G P + N L+ LC + L +A ++ M
Sbjct: 332 WLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNG 391
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
PD +Y ++ + K + A +++EM+ N L I + + + R + +A
Sbjct: 392 VCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR-ISEA 450
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
E++ + KG + ++V+G E A + V GM G
Sbjct: 451 EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496
>gi|224089372|ref|XP_002308709.1| predicted protein [Populus trichocarpa]
gi|222854685|gb|EEE92232.1| predicted protein [Populus trichocarpa]
Length = 1115
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 73/308 (23%), Positives = 127/308 (41%), Gaps = 9/308 (2%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR 97
V A A + +LL + + PN ++ + R +D+ L+ F +
Sbjct: 376 VNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTLISGLLRANRLDDALDLFSNMESLGV 435
Query: 98 PKIAYDYLL--SYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQ 153
AY Y+L Y +S HP AL ++ G P V L S A + R +++
Sbjct: 436 EPTAYTYILLIDYHGKSGHP-GKALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEAK 494
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
++ + E+KS G PD T N ++ + Q+ EA K+L MS +C PD+ + +I
Sbjct: 495 AMFN---ELKSSGLAPDSVTYNMMMKCYSKVGQVDEAIKLLSEMSKVQCEPDVIVINSLI 551
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ A + +A +M M M L P + A L ++ KAV++ E + GC
Sbjct: 552 DTLYKAGRVEEAWQMFCRME-EMNLAPTVVTYNILLAGLGKEGQIQKAVQLFESMNGHGC 610
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
+ +++ + E LA K MT P + ++ G + K A
Sbjct: 611 SPNTITFNTLLDCLCKNDEVDLALKMFYKMTTMNCRPDVLTFNTIIHGFIKQNQIKNAIW 670
Query: 334 VRQRFAEL 341
+ + +L
Sbjct: 671 LFHQMKKL 678
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 2/132 (1%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
+Y+ L+ + LQS AL + +R + G P + L A +RR ++V +L
Sbjct: 196 SYNGLIHFLLQSGF-CKEALEVYRRMVSEGLKPSLKTFSALMVASGKRR-NIKTVMGLLE 253
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+S+G P+ T + L ++ EA +++K M C PD+ +Y+++I A+ TAR
Sbjct: 254 EMESMGLRPNIYTYTICIRVLGRDGKIDEAYRIMKRMDDDGCGPDVVTYTVLIDALCTAR 313
Query: 221 KTNDAVEMMKEM 232
K +DA+ + +M
Sbjct: 314 KLDDAMCLFTKM 325
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
V I EM++ GY PD T LV++LC ++ EA +L M +P+L +Y+ +
Sbjct: 351 DKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTMRKQGVLPNLHTYNTL 410
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + A + +DA+++ M ++G+ P I + + KA+E E ++ +G
Sbjct: 411 ISGLLRANRLDDALDLFSNME-SLGVEPTAYTYILLIDYHGKSGHPGKALETFEKMKARG 469
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 100/229 (43%), Gaps = 13/229 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A I++R GC P ++ + ++ C ++ + D + +MKS + PD T
Sbjct: 283 AYRIMKRMDDDGCGP----DVVTYTVLIDALCTARKLDDAMCLFTKMKSSSHKPDKVTYV 338
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ L + K+ M + PD+ +++I++ A+ A + N+A +++ M
Sbjct: 339 TLLDKFSDCGHLDKVEKIWTEMEADGYAPDVVTFTILVNALCKAGRINEAFDLLDTM-RK 397
Query: 236 MGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G++P ++ LRANR + A+++ +E G Y ++++ +
Sbjct: 398 QGVLPNLHTYNTLISGLLRANR-LDDALDLFSNMESLGVEPTAYTYILLIDYHGKSGHPG 456
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
A +T M RG P I + LA +G A + F ELKS
Sbjct: 457 KALETFEKMKARGIAPNIVACNASLYSLAEMGRLGEA---KAMFNELKS 502
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 93/212 (43%), Gaps = 13/212 (6%)
Query: 37 TVRAAVDAKDYQ-QIPELLGSFEE----ACQNPNPFSF---LSNFPQNHRIKVIDEMLES 88
T + +DA +I EL ++E C+ PN ++ +SN +++R+ ++ +
Sbjct: 827 TYNSLIDAHGKSGKINELFDLYDEMLTRGCK-PNTITYNMVISNLVKSNRLDKAMDLYYN 885
Query: 89 FIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+ P + L+ L+S L A + + GC P I +L + + +
Sbjct: 886 LVSGDFSPTP-CTFGPLIDGLLKS-GRLDDAHEMFDGMVHYGCRPNSAIYNILVNGY-GK 942
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + M G PD + LV LC ++ +A + + A PDL +
Sbjct: 943 LGHVDTACEFFKRMVKEGIRPDLKSYTILVDILCIAGRVDDALHYFEKLKQAGLDPDLVA 1002
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
Y+++I + +++T +A+ + EM N G++P
Sbjct: 1003 YNLMINGLGRSQRTEEALSLFHEMQ-NRGIVP 1033
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 66/169 (39%), Gaps = 1/169 (0%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
K +G P N L+ + + A + + M SA C PD +Y+ +I A + K
Sbjct: 782 KELGVKPTLKVYNLLIDGFLEVHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKI 841
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
N+ ++ EM L G P V + L + + KA+++ L +
Sbjct: 842 NELFDLYDEM-LTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLVSGDFSPTPCTFGP 900
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G L+ A + GM G P + +V G +G A
Sbjct: 901 LIDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTA 949
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 45/198 (22%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
G P ++ LL +LE + VA ++ EMKS G PD T N L+ + ++
Sbjct: 785 GVKPTLKVYNLLIDGFLE--VHNVEVAWNLFEEMKSAGCAPDTFTYNSLIDAHGKSGKIN 842
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
E + M + C P+ +Y++VI + + + + A+++ +V + P +
Sbjct: 843 ELFDLYDEMLTRGCKPNTITYNMVISNLVKSNRLDKAMDLYYNLV-SGDFSPTPCTFGPL 901
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
L + + A EM + + GC Y ++V G + A + M + G
Sbjct: 902 IDGLLKSGRLDDAHEMFDGMVHYGCRPNSAIYNILVNGYGKLGHVDTACEFFKRMVKEGI 961
Query: 309 IPYIKVRQKVVEGLAGVG 326
P +K +V+ L G
Sbjct: 962 RPDLKSYTILVDILCIAG 979
>gi|15237375|ref|NP_199422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171880|sp|Q9FNL2.1|PP418_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g46100
gi|9757730|dbj|BAB08255.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332007954|gb|AED95337.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 472
Score = 61.2 bits (147), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C++ D I LEM G PD T L+S LC ++ EA K+ M +C P
Sbjct: 167 CRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ +I + ++ ++A+ ++EM + G+ P + L + +A+E+
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYLEEMK-SKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + +GC Y ++ G + ++ A + + M +G P + KV+ G +
Sbjct: 286 EMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAI 345
Query: 326 GEWKLA 331
+++ A
Sbjct: 346 SKFREA 351
>gi|302795973|ref|XP_002979749.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
gi|300152509|gb|EFJ19151.1| hypothetical protein SELMODRAFT_111428 [Selaginella moellendorffii]
Length = 388
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 85/182 (46%), Gaps = 4/182 (2%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C + IL M G PD T N L+S LC + + +A ++++ M A P+ +Y
Sbjct: 97 CNVRKAKGILELMIDSGCKPDVVTYNTLISGLCKLRRADDALQLMREMEPA---PNTITY 153
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ VI + +RK +A ++ EM+ ++G V A L +REM KAV++ ++
Sbjct: 154 NTVINGLWRSRKDTEAQALLDEMI-SVGCPFSVSTYNCVIANLCRSREMEKAVDVFLYMR 212
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+K C + +V+G L + AG T+ M G +K K++ L G +
Sbjct: 213 KKKCEADEVTFATLVDGFLRDKRLEDAGGTLDWMARAGIPSDVKSYTKLLNALCDRGSAQ 272
Query: 330 LA 331
A
Sbjct: 273 KA 274
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R +Q +I M GY P + N L+ LC ++ A + + M E PD+ S
Sbjct: 268 RGSAQKACEIFNLMVDRGYAPTLVSYNVLLKGLCKALRVEHALVLFREMQEREIQPDVVS 327
Query: 209 YSIVIGAMSTARKTNDAVEMMKE 231
Y+ VI + AR+ ++A+++ ++
Sbjct: 328 YTTVIKGLCAARRIDEAIDLFRD 350
>gi|357499975|ref|XP_003620276.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495291|gb|AES76494.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/268 (19%), Positives = 122/268 (45%), Gaps = 12/268 (4%)
Query: 78 RIKVIDEMLESFIPLRPR--SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
++K+++E + F + + S + Y L+S L L A+ + + + P
Sbjct: 237 KVKLVNEAFDLFSEMVSKGISPDVVTYSALIS-GFCILGKLKDAIDLFNKMILENIKPDV 295
Query: 136 QIRLLLSSAWLE--RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+L +A+ + + + ++V D++++ G P+ T N L+ C + ++ +A +
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQ---GIKPNFVTYNSLMDGYCLVKEVNKAKSI 352
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M+ PD++SYSI+I +K ++A+ + KEM ++P + L
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLS 411
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+ + A+++++ + +G P Y +++ + + A + ++GF P I
Sbjct: 412 KSGRISYALQLVDQMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDIS 471
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+++GL G+ + A R+ F +L
Sbjct: 472 TYSILIKGLCQSGKLEDA---RKVFEDL 496
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 77/181 (42%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++++ D+L + P+ N ++ S+C + + EA + M S PD+ +YS
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMVSKGISPDVVTYS 264
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I K DA+++ +M+L + P + A + +M + + + + +
Sbjct: 265 ALISGFCILGKLKDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+G F Y +++G +E A M + G P I+ ++ G + ++
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383
Query: 331 A 331
A
Sbjct: 384 A 384
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 98/230 (42%), Gaps = 12/230 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P A ++ + L+ G VP I S L + Q Q ++ ++G+H D +
Sbjct: 136 IPFAFSVFAKILKMGYVP-DTITFTTLSKGLCLKGQIQQAFLFHDKVVALGFHFDQISYG 194
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + + A +L+ + P++ Y+ +I +M + N+A ++ EMV +
Sbjct: 195 TLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMV-S 253
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECRE 292
G+ P V+ +A + + K + I+ + + + ++V C++
Sbjct: 254 KGISPD---VVTYSALISGFCILGKLKDAIDLFNKMILENIKPDVYTFNILVNAF--CKD 308
Query: 293 YILA-GKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ GKTV M ++G P +++G V E A + A+
Sbjct: 309 GKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQ 358
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 69/150 (46%), Gaps = 7/150 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G P+ T N ++ +LC Q+ +A +L PD+ +YSI+I + +
Sbjct: 425 QMHDRGVPPNICTYNSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSG 484
Query: 221 KTNDAVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K DA ++ +++++ N+ + M+ N +A+ ++ +E GC
Sbjct: 485 KLEDARKVFEDLLVKGYNLDVYAYTIMIQGFCVEGLFN----EALALLSKMEDNGCIPDA 540
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ YE+++ + E +A K + M RG
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARG 570
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/138 (23%), Positives = 64/138 (46%), Gaps = 4/138 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ L+ C++ V +L + K G+ PD T + L+ LC +L +A KV + +
Sbjct: 439 NSILDALCKTHQVDKAIALLTKFKDKGFQPDISTYSILIKGLCQSGKLEDARKVFEDLLV 498
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y+I+I N+A+ ++ +M N G +P + +L E
Sbjct: 499 KGYNLDVYAYTIMIQGFCVEGLFNEALALLSKMEDN-GCIPDAKTYEIIILSLFKKDEND 557
Query: 260 KAVEMIEFLERKGCPIGF 277
A +++ + +G P+ F
Sbjct: 558 MAEKLLREMIARGLPLNF 575
>gi|302815701|ref|XP_002989531.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
gi|300142709|gb|EFJ09407.1| hypothetical protein SELMODRAFT_130008 [Selaginella moellendorffii]
Length = 436
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 85/183 (46%), Gaps = 4/183 (2%)
Query: 146 LERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ER C+++ + D L EM + G PD N+++S LC +++ EA + + M
Sbjct: 121 VERLCKTKRIDDALATVEEMATRGIKPDAFIYNFVLSGLCQEEKVEEARLLFEKMVKQRI 180
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ +Y+ +I + A + A E+ KEM G +P + + +++ A
Sbjct: 181 NPNVVTYNTLINGLCKAWRIETAYELFKEMA-GKGYVPTEVSYNTLIDGFCKKKDLVAAK 239
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ + + R C Y +++G + + A + + GM ++G P + +++G
Sbjct: 240 DVFDKMVRSNCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMVKKGVTPNVATYSCLIDGF 299
Query: 323 AGV 325
V
Sbjct: 300 CKV 302
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 72/172 (41%), Gaps = 6/172 (3%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L AW + ++ ++ EM GY P + N L+ C LV A V M +
Sbjct: 194 LCKAW-----RIETAYELFKEMAGKGYVPTEVSYNTLIDGFCKKKDLVAAKDVFDKMVRS 248
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
CVP++ +Y+ +I +S + K A E++ MV G+ P + R + +
Sbjct: 249 NCVPNVVTYTTLIDGLSKSGKVQAAAEVLDGMV-KKGVTPNVATYSCLIDGFCKVRRVDE 307
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
A +++E + +G Y +++ + A K GM +R P +
Sbjct: 308 AHKLLEQMVTQGIAPTVVTYNILLNSLCRADKLEDAFKLFRGMAQRRCHPTV 359
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 60/118 (50%), Gaps = 7/118 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L ++ G P + S ++ C+ + V + +L +M + G P T N
Sbjct: 273 AAEVLDGMVKKGVTP----NVATYSCLIDGFCKVRRVDEAHKLLEQMVTQGIAPTVVTYN 328
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L++SLC D+L +A K+ +GM+ C P + +Y+ ++ A+ ++ + A + EM+
Sbjct: 329 ILLNSLCRADKLEDAFKLFRGMAQRRCHPTVVTYNTLLRALCHHKQLDGAHRLYAEMI 386
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 14/179 (7%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
PN ++ + ++ +++ E+L+ + + P +A L + + A
Sbjct: 252 PNVVTYTTLIDGLSKSGKVQAAAEVLDGMV--KKGVTPNVATYSCLIDGFCKVRRVDEAH 309
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY---HPDCGTCNY 176
+L++ + G P V +LL+S C++ + D + + HP T N
Sbjct: 310 KLLEQMVTQGIAPTVVTYNILLNSL-----CRADKLEDAFKLFRGMAQRRCHPTVVTYNT 364
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC QL A ++ M + C PD +Y + ++ A K ++A E+M++M L
Sbjct: 365 LLRALCHHKQLDGAHRLYAEMIAKGCPPDAITYDTLAWGLTRAGKVHEAQELMEKMKLT 423
>gi|224085974|ref|XP_002307761.1| predicted protein [Populus trichocarpa]
gi|222857210|gb|EEE94757.1| predicted protein [Populus trichocarpa]
Length = 563
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 87/189 (46%), Gaps = 1/189 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + + I M+ G PD N ++S+ ++ E K + + S C P+
Sbjct: 317 LGRAGKIEDAVMIFGSMEEKGCVPDTNVYNAMISNFISVGNFDECMKYYRCLLSKNCDPN 376
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y+ +I + A K DA+EM EM L+ G++ + G V L + A+ +
Sbjct: 377 IDTYTRMISGLIKASKVADALEMFDEM-LDRGMVTKTGTVTSFIEPLCSFGPPHAAMVIY 435
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ GC I Y++++ + + K M E G+ ++V + ++ GL +
Sbjct: 436 TKARKVGCKISLSAYKLLLMRLSRFGKCGMMLKIWDEMQESGYSSDMEVYEYLISGLCNI 495
Query: 326 GEWKLATVV 334
G+++ A +V
Sbjct: 496 GQFENAVLV 504
>gi|357477565|ref|XP_003609068.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
gi|355510123|gb|AES91265.1| hypothetical protein MTR_4g108600 [Medicago truncatula]
Length = 932
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 107/261 (40%), Gaps = 36/261 (13%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
+P I L+ L + L A ++ + GC+P L + R+ + S
Sbjct: 502 KPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYC-RQLKLDSAI 560
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ M S G PD T N L++ LC + E ++ K M+ C P++ +Y+ +I ++
Sbjct: 561 ELVNRMWSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIESL 620
Query: 217 STARKTNDAVEMMKEM--------VLNMGL--------------------MPRQGMVIKV 248
++K N+AV+++ EM V++ G M +Q V
Sbjct: 621 CNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGDLDGAYGLFRGMEKQYDVSHT 680
Query: 249 AA-------ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
A A M A+ + +++ GC Y V+++G + K ++
Sbjct: 681 TATYNIIISAFSEQLNMKMALRLFSEMKKNGCDPDNYTYRVLIDGFCKTGNVNQGYKFLL 740
Query: 302 GMTERGFIPYIKVRQKVVEGL 322
E+GFIP + +V+ L
Sbjct: 741 ENIEKGFIPSLTTFGRVLNCL 761
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/281 (19%), Positives = 117/281 (41%), Gaps = 22/281 (7%)
Query: 55 GSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLES--FIPLRPRSRPKIAYDYLLSYT 109
G FE PN F++ + + + + + +L+ F +P + Y L++
Sbjct: 394 GGFE-----PNDFTYNSIIDGYCKKGMVVDANRILKDAVFKGFKP---DEFTYCSLVNGF 445
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIG 166
Q P A+A+ + L G P +++ + ++ CQ + ++ EM G
Sbjct: 446 CQDGDP-DQAMAVFKDGLGKGLRP----SIIVYNTLIKGLCQQGLILPALQLMNEMAEKG 500
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N +++ LC + L +A ++ + C+PD+ +Y+ ++ K + A+
Sbjct: 501 CKPDIWTYNLIINGLCKMGCLSDANHLIGDAITKGCIPDIFTYNTLVDGYCRQLKLDSAI 560
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E++ M + G+ P + L + + +E+ + + KGC Y ++E
Sbjct: 561 ELVNRM-WSQGMTPDVITYNTLLNGLCKTAKSEEVMEIFKAMTEKGCAPNIITYNTIIES 619
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ A + M +G P + ++ G VG+
Sbjct: 620 LCNSKKVNEAVDLLGEMKSKGLTPDVVSFGTLITGFCKVGD 660
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 56/278 (20%), Positives = 109/278 (39%), Gaps = 15/278 (5%)
Query: 53 LLGSFEEACQNPNPFSFLSNFPQNHRIK-VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111
+LG F A + F N R + + DEMLE + P + L + L
Sbjct: 253 VLGCFSNAVAYCTVVTGFYEFGDNDRARELFDEMLECCLC------PDVTTFNKLVHALC 306
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYH 168
+ + + + L+ G P L + +++ C+ S+ + + + G
Sbjct: 307 KKGFVLESERLFDKVLKRGVCP----NLFTFNIFIQGLCKEGSLDRAVRLLGCVSREGLR 362
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N ++ LC ++VEA + L M + P+ +Y+ +I DA +
Sbjct: 363 PDVVTYNTVICGLCRKSRVVEAEECLHKMVNGGFEPNDFTYNSIIDGYCKKGMVVDANRI 422
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+K+ V G P + + + + +A+ + + KG Y +++G
Sbjct: 423 LKDAVFK-GFKPDEFTYCSLVNGFCQDGDPDQAMAVFKDGLGKGLRPSIIVYNTLIKGLC 481
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + A + + M E+G P I ++ GL +G
Sbjct: 482 QQGLILPALQLMNEMAEKGCKPDIWTYNLIINGLCKMG 519
>gi|297745567|emb|CBI40732.3| unnamed protein product [Vitis vinifera]
Length = 520
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 84/191 (43%), Gaps = 1/191 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + ++ M+ G P+ N L+S+ + E K M S+ C P+
Sbjct: 274 LGRAGRIDDAVEVFHHMEETGCVPNACVYNALISNFISTRDFDECLKYYNFMVSSNCDPN 333
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y+ +I A ARK DA+EM+ EMV G++P G + L A+ +
Sbjct: 334 MDTYTKLIVAFLKARKVADALEMLDEMV-GRGMIPTTGAITSFIEPLCQYGPPHAAMMIY 392
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y++++ + + M E G+ +V + V+ GL +
Sbjct: 393 KKARKVGCRISLSAYKLLLMRLSRFGKCGMLLNLWDEMQESGYSSDTEVYEYVINGLCNI 452
Query: 326 GEWKLATVVRQ 336
G+ A +V +
Sbjct: 453 GQLDTAVLVME 463
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 64/171 (37%), Gaps = 2/171 (1%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T N ++ +L + KVLK M P+ E+ SIV+ + AR+ + A+EM
Sbjct: 124 DVDTYNVIIKALGRRKFIEFVVKVLKDMHIQGISPNYETLSIVMDSFIKARQVSKAIEMF 183
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ + G + + V R A + + G P Y +++ G +
Sbjct: 184 RNLEEFGGKCDTESL--NVLLQCLCQRSHVGAANLFFNAMKGGIPFNCMTYNIIIGGWSK 241
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ + + M GF P ++EGL G A V E
Sbjct: 242 YGKIGEMERCLKAMVADGFSPNCLTFSHLIEGLGRAGRIDDAVEVFHHMEE 292
>gi|255572227|ref|XP_002527053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223533615|gb|EEF35353.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 677
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/166 (26%), Positives = 75/166 (45%), Gaps = 5/166 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM SIG PD T N L+ C + +EA + M PDL S+S +IG S
Sbjct: 277 VFNEMLSIGLSPDTTTYNTLLVESCRNNNFLEAKDIFSDMLHRGVSPDLISFSSLIGVSS 336
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A+ ++M + GL+P + + N M +A+E+ + + +GC +
Sbjct: 337 RNGHLDQALMYFRDMKTS-GLVPDNVIYTILINGYCRNGMMSEALEIRDKMLEQGCALDV 395
Query: 278 QGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQKVVEG 321
Y ++ G C++ +LA + M ERG +P ++ G
Sbjct: 396 VAYNTILNGL--CKKKLLADANALFDEMVERGVVPDFCTFTTLIHG 439
>gi|242062032|ref|XP_002452305.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
gi|241932136|gb|EES05281.1| hypothetical protein SORBIDRAFT_04g023380 [Sorghum bicolor]
Length = 347
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 101/213 (47%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L++ + GC P L A+ +++ +++A + L M S G +PD + N L+
Sbjct: 105 AMEVLEQIPKYGCTPNSLSYNPLLHAFCKQKKMDKAMAFVEL-MVSRGCYPDIVSYNTLL 163
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++LC ++ A +L + C P L SY+ VI ++ A KT +A+E++ EM+ + GL
Sbjct: 164 TALCRNGEVDVAIDLLHQLKGKGCSPVLISYNTVIDGLTKAGKTKEALELLDEMI-SKGL 222
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P +A+ L ++ +A+ ++ G Y ++ G + RE A
Sbjct: 223 QPDIITYTTIASGLCREDKIEEAIRTFCKVQDMGIRPTVVLYNAILLGLCKRRETHNAID 282
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G +P +VEGLA G K A
Sbjct: 283 LFSYMISNGCMPNESTYTILVEGLAYEGLVKEA 315
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 34/208 (16%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM+ G PD T N +++ +C ++ +A + L+ + S P+ SY+IV+ +
Sbjct: 3 LLDEMRDKGCAPDIITYNVVLNGICQEGRVDDAMEFLENLPSYGGEPNTVSYNIVLKGLF 62
Query: 218 TARKTNDAVEMMKEM----------VLNM--GLMPRQGMVIKVAAALR------------ 253
TA + DA ++M+EM NM + R+G+V L
Sbjct: 63 TAERWEDAEKLMEEMAHKGCPPNVVTFNMLISFLCRRGLVEPAMEVLEQIPKYGCTPNSL 122
Query: 254 ----------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
++M KA+ +E + +GC Y ++ E +A + +
Sbjct: 123 SYNPLLHAFCKQKKMDKAMAFVELMVSRGCYPDIVSYNTLLTALCRNGEVDVAIDLLHQL 182
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+G P + V++GL G+ K A
Sbjct: 183 KGKGCSPVLISYNTVIDGLTKAGKTKEA 210
>gi|147819144|emb|CAN78081.1| hypothetical protein VITISV_021300 [Vitis vinifera]
Length = 778
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L++MKS G P+ T N LV C + L EAA V++ M+ +PD+ +Y+++I +
Sbjct: 264 DLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGL 323
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE---RKGC 273
+ +A ++ EM N+ L+P V+ + E K E + LE KG
Sbjct: 324 CNEGRIEEAFKLRDEME-NLKLLPD---VVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379
Query: 274 PIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ ++V+ C+E + A T+ M E GF P ++ G G
Sbjct: 380 KPNAVTHNIMVK--WYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 4/200 (2%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S H + + ++ G VP V +++ LE + + + L M PD
Sbjct: 185 SSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD--AVEFLNVMGKYNCSPD 242
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N ++ +LC +L +A +L M S +P+ +Y+I++ +A +++
Sbjct: 243 NVTYNTILDALCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIE 302
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M N L+P + L + +A ++ + +E Y ++ GCLE
Sbjct: 303 LMTQN-NLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEW 361
Query: 291 REYILAGKTVMGMTERGFIP 310
+ A K + M+E+G P
Sbjct: 362 SKISEAFKLLEEMSEKGVKP 381
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 75/195 (38%), Gaps = 4/195 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLE 207
Q I +MK + P+ TCN L++SL + + + A VP++
Sbjct: 150 QPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVN 209
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++IVI K DAVE + M P + AL + A +++
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMG-KYNCSPDNVTYNTILDALCKKGRLGDARDLLMD 268
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ +G Y ++V G + A + MT+ +P + ++ GL G
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328
Query: 328 WKLATVVRQRFAELK 342
+ A +R LK
Sbjct: 329 IEEAFKLRDEMENLK 343
>gi|195616298|gb|ACG29979.1| hypothetical protein [Zea mays]
Length = 577
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R A+I+ MK+ G+ PD T + LV LC D+L +A KVL M + CVPD
Sbjct: 322 LTRNGMFDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPD 381
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMV 233
L++++++I A + AV+ + EM+
Sbjct: 382 LKTWTLLIHGCCLAGDVDRAVQYLTEMI 409
>gi|224069254|ref|XP_002302938.1| predicted protein [Populus trichocarpa]
gi|222844664|gb|EEE82211.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 93/222 (41%), Gaps = 8/222 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTC 174
+AL L SG P + + + R C+ V D I E++ G P +
Sbjct: 215 VALEFYLEILDSGYPP----NVYTFNVLMNRLCKEGKVKDAQLIFDEIRKTGLQPTAVSF 270
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L++ C L E ++ M PD+ +YS +I + + DA + KEM
Sbjct: 271 NTLINGYCKSGNLEEGFRLKMVMEEFRVFPDVFTYSALIDGLCKECQLEDANHLFKEMC- 329
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ GL+P + N + A+E+ + + KG Y +++G + +
Sbjct: 330 DRGLVPNDVTFTTLINGQCKNGRVDLALEIYQQMFTKGLKADLVLYNTLIDGLCKGGYFR 389
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
A K V MT+RG IP +++G G+ +LA +R+
Sbjct: 390 EARKFVGEMTKRGLIPDKFTYTTLLDGSCKEGDLELALEMRK 431
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 51/115 (44%), Gaps = 7/115 (6%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVS 179
L+ LR+G P ++ + C+ V +L EM+S G+ P T N L++
Sbjct: 465 LREMLRAGLKPDDGTYTMVMDGF----CKKGDVKMGFKLLKEMQSDGHIPGVITYNVLMN 520
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
LC Q+ A +L M + VPD +Y+I++ K D + EM L
Sbjct: 521 GLCKQGQVKNADMLLNAMLNLGVVPDDITYNILLQGHCKHGKLGDFQNVKTEMGL 575
>gi|359486541|ref|XP_002275423.2| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Vitis vinifera]
Length = 778
Score = 60.8 bits (146), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 81/176 (46%), Gaps = 11/176 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L++MKS G P+ T N LV C + L EAA V++ M+ +PD+ +Y+++I +
Sbjct: 264 DLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGL 323
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE---RKGC 273
+ +A ++ EM N+ L+P V+ + E K E + LE KG
Sbjct: 324 CNEGRIEEAFKLRDEME-NLKLLPD---VVSYNTLINGCLEWSKISEAFKLLEEMSEKGV 379
Query: 274 PIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ ++V+ C+E + A T+ M E GF P ++ G G
Sbjct: 380 KPNAVTHNIMVK--WYCKEGKMDDASNTITKMEESGFSPDCVTYNTLINGYCKAGN 433
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 43/200 (21%), Positives = 83/200 (41%), Gaps = 4/200 (2%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S H + + ++ G VP V +++ LE + + + L M PD
Sbjct: 185 SSHSVSFSREAFNDAIKLGIVPNVNTFNIVIYGYCLENKFKD--AVEFLNVMGKYNCSPD 242
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N ++ +LC +L +A +L M S +P+ +Y+I++ +A +++
Sbjct: 243 NVTYNTILDTLCKKGRLGDARDLLMDMKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIE 302
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M N L+P + L + +A ++ + +E Y ++ GCLE
Sbjct: 303 LMTQN-NLLPDVWTYNMLINGLCNEGRIEEAFKLRDEMENLKLLPDVVSYNTLINGCLEW 361
Query: 291 REYILAGKTVMGMTERGFIP 310
+ A K + M+E+G P
Sbjct: 362 SKISEAFKLLEEMSEKGVKP 381
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 74/195 (37%), Gaps = 4/195 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLE 207
Q I +MK + P+ TCN L++SL + + + A VP++
Sbjct: 150 QPHHAFQIFKKMKRLRLRPNLLTCNTLLNSLVRYPSSHSVSFSREAFNDAIKLGIVPNVN 209
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++IVI K DAVE + M P + L + A +++
Sbjct: 210 TFNIVIYGYCLENKFKDAVEFLNVMG-KYNCSPDNVTYNTILDTLCKKGRLGDARDLLMD 268
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ +G Y ++V G + A + MT+ +P + ++ GL G
Sbjct: 269 MKSRGLLPNRNTYNILVYGYCKMGWLKEAANVIELMTQNNLLPDVWTYNMLINGLCNEGR 328
Query: 328 WKLATVVRQRFAELK 342
+ A +R LK
Sbjct: 329 IEEAFKLRDEMENLK 343
>gi|302775582|ref|XP_002971208.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
gi|300161190|gb|EFJ27806.1| hypothetical protein SELMODRAFT_94745 [Selaginella moellendorffii]
Length = 599
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 116/249 (46%), Gaps = 11/249 (4%)
Query: 82 IDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
D+ E F + R P + Y+ ++ + + L A ++++ + G VP +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVMIDASCKR-GMLEEACDLIKKMIEDGHVP----DV 115
Query: 140 LLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ + ++ C+S V + LL EM+ +G P+ + N ++ LC ++ +A +V
Sbjct: 116 VTYNTVMDGLCKSSRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + + PD SY I+I ++ A K N+A ++ + M L+ G+ P V +
Sbjct: 176 MEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRM-LDSGITPSAVTYNVVIHGMCLAY 234
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ +A+E+ + + KGC + ++++ + + A + + MT+ G +P +
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVVTYS 294
Query: 317 KVVEGLAGV 325
++ GL +
Sbjct: 295 TLISGLCSI 303
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 78/332 (23%), Positives = 137/332 (41%), Gaps = 23/332 (6%)
Query: 16 RPCLLQFSSLRSMSSLR-TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
RP F+ L R L+E R D +P+++ + +S
Sbjct: 252 RPSRFTFNILIDAHCKRGKLDEAFRLLKRMTDDGHVPDVV----------TYSTLISGLC 301
Query: 75 QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP- 133
R+ +LE + + + +P + L + L + A +L + SG P
Sbjct: 302 SIARVDDARHLLEDMV--KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMVSSGQSPD 359
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
V L+ R Q++ ++L +M + G P+ T LVS LC ++L EA V
Sbjct: 360 VVTYNTLVHGHC--RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANRLPEACGV 417
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M S+ C P+L +Y+ +I +A + + +++ EMV G+ P + +AA L
Sbjct: 418 FAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC-AGISPDHVVYGTLAAELC 476
Query: 254 ANREMWKAVEMI----EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+ +A+E++ E L + G + Y V+G LE + +A V M G +
Sbjct: 477 KSGRSARALEILREGRESLRSEA--WGDEVYRFAVDGLLEAGKMEMALGFVRDMVRGGQL 534
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
P + +V GL G+ A V + +L
Sbjct: 535 PAPERCASLVAGLCKSGQGGEARAVLEEIMDL 566
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 63/269 (23%), Positives = 116/269 (43%), Gaps = 18/269 (6%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
ID+ + F + + P ++ Y +L L L A + QR L SG P +
Sbjct: 166 IDQACQVFHEMEAKDIPPDSWSYGILIDGLAKAGKLNEAYKLFQRMLDSGITPSA----V 221
Query: 141 LSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+ + C + ++ + L M+S G P T N L+ + C +L EA ++LK M
Sbjct: 222 TYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKLDEAFRLLKRM 281
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVAAALRA 254
+ VPD+ +YS +I + + + +DA ++++MV ++ + ++ + A R
Sbjct: 282 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR- 340
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A E+++ + G Y +V G + A + + M RG P +
Sbjct: 341 ---IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+V GL A V FA++KS
Sbjct: 398 YTALVSGLCKANRLPEACGV---FAQMKS 423
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 58/128 (45%), Gaps = 5/128 (3%)
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M+ PD SY I+I ++ A K NDA + +++ L+ G+ P + L
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARNLFQKL-LHSGVTPSTVAYTSLIHGLCMAN 59
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKV 314
A E+ + R+GCP Y V+++ C+ +L A + M E G +P +
Sbjct: 60 SFDDARELFADMNRRGCPPSPVTYNVMIDA--SCKRGMLEEACDLIKKMIEDGHVPDVVT 117
Query: 315 RQKVVEGL 322
V++GL
Sbjct: 118 YNTVMDGL 125
>gi|148906470|gb|ABR16388.1| unknown [Picea sitchensis]
Length = 700
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 100/222 (45%), Gaps = 2/222 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +++ P ++ SA +R+ Q+ +L +M+ G P+ T N L+
Sbjct: 342 AMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYG-VLQKMRENGCEPNIYTYNALI 400
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LCA+ + EA +++ M P++ +Y+I+ + R+ + A EM E L GL
Sbjct: 401 QGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNE-ALARGL 459
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + +A+++++ + + C Y +++G ++ + A +
Sbjct: 460 KPNRVTYNTLLNGYCRGSRLIEAMDILKEMHQNDCTPDHVTYTTLIQGLVQGNQLPDALR 519
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M +G+ + GLA VG K A++ +R +
Sbjct: 520 MHDEMENKGYDVNFDTLNILARGLARVGNHKDASIFYRRMKD 561
Score = 41.6 bits (96), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 56/126 (44%), Gaps = 1/126 (0%)
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+++ +A K+L M PD+ +Y+IVI A+ + A ++++M N G P
Sbjct: 337 EKMEDAMKLLDDMIQNNYAPDVVTYTIVISALCKRKMIEQAYGVLQKMREN-GCEPNIYT 395
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304
+ L A R +A+E++ +E+ G P Y ++ G + R A +
Sbjct: 396 YNALIQGLCAVRRPEEALELVTLMEQGGVPPNIYTYTILTHGLCKLRRLDRAKEMFNEAL 455
Query: 305 ERGFIP 310
RG P
Sbjct: 456 ARGLKP 461
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 35/71 (49%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM + GY P+ T N ++ C +L +A +L M PD SY+I+I
Sbjct: 590 LLYEMINKGYSPNLTTYNTMIKGFCRQGRLDDADAMLNFMIENGIGPDTGSYNILIKEFH 649
Query: 218 TARKTNDAVEM 228
+T DA ++
Sbjct: 650 NQGRTQDADQL 660
>gi|212722066|ref|NP_001132329.1| uncharacterized protein LOC100193771 [Zea mays]
gi|194694094|gb|ACF81131.1| unknown [Zea mays]
Length = 502
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R A+I+ MK+ G+ PD T + LV LC D+L +A KVL M + CVPD
Sbjct: 247 LTRNGMFDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPD 306
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMV 233
L++++++I A + AV+ + EM+
Sbjct: 307 LKTWTLLIHGCCLAGDVDRAVQYLTEMI 334
>gi|242042646|ref|XP_002459194.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
gi|241922571|gb|EER95715.1| hypothetical protein SORBIDRAFT_02g000310 [Sorghum bicolor]
Length = 847
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/218 (25%), Positives = 98/218 (44%), Gaps = 11/218 (5%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLV 178
A+L + L+ G + + W+ C+ + + + ++S+ + PD T N L+
Sbjct: 136 ALLAKVLKRGM----SVNKFTCNIWIRGLCEGGRLEEAVALVESMDAYIAPDVVTYNTLM 191
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC ++ EAA+ L+ M + C+PD +Y+ +I +A E++K+ + G
Sbjct: 192 RGLCKDSKVQEAAQYLRRMMNQGCIPDDFTYNTIIDGYCKRDMLQEATELLKDAIFK-GF 250
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE-YILAG 297
+P + + L A ++ +A+E+ + K Y +V+G CR+ IL
Sbjct: 251 VPDRVTYCSLINGLCAEGDVERALELFNEAQAKDLKPDLVVYNSLVKGL--CRQGLILHA 308
Query: 298 KTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
VM M E G P I V+ GL +G A VV
Sbjct: 309 LQVMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVV 346
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 84/186 (45%), Gaps = 7/186 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G HPD T N +++ LC + + +AA V+ +PD+ +++ +I
Sbjct: 311 VMNEMVEDGCHPDIWTYNIVINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTMIDGYC 370
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCP 274
K + A+++++ M + G+ P I + L + KA E+ E E KGC
Sbjct: 371 KRLKLDSALQLVERMWM-YGIAPD---AITYNSVLNGLCKAGKAKEVNETFEEMILKGCR 426
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y +++E + + A ++ M++ G +P ++ G G+ A ++
Sbjct: 427 PNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFNTLIHGFCRNGDLDGAYLL 486
Query: 335 RQRFAE 340
Q+ E
Sbjct: 487 FQKLDE 492
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 73/173 (42%), Gaps = 1/173 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+++ V + EM G P+ T N L+ + C I+QL EA+ V+ MS VPD S++
Sbjct: 409 KAKEVNETFEEMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMSQDGLVPDTISFN 468
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I + A + +++ G + A + M A ++ +
Sbjct: 469 TLIHGFCRNGDLDGAYLLFQKLD-EKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMIS 527
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
KG Y V+V+G + A + M +GF+P + +V+ LA
Sbjct: 528 KGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRVLNSLA 580
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 81/182 (44%), Gaps = 21/182 (11%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q I EM S GY PD T LV C + A L M S VP + ++ V
Sbjct: 516 QMAEKIFGEMISKGYKPDLYTYRVLVDGSCKAANVDRAYVHLAEMVSKGFVPSMATFGRV 575
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN--REMWKAVEMIEFLER 270
+ +++ + ++AV ++ MV R G+V +V + + +E+ ++E L +
Sbjct: 576 LNSLAMNHRVSEAVAIIHIMV-------RMGVVPEVVDTILSTDKKEIAAPKILVEELMK 628
Query: 271 KGCPIGFQGYEVVVEGCLE------CREYILAGKTVMGMTERGFIPY----IKVRQKVVE 320
KG I + YEV+ EG + R++ L+ M T G I Y +++ ++
Sbjct: 629 KG-HISYPTYEVLHEGVRDNKLTRKARKWRLSDPDCMNTTTHG-ISYSLLLLQIDHILIS 686
Query: 321 GL 322
GL
Sbjct: 687 GL 688
>gi|302754868|ref|XP_002960858.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
gi|300171797|gb|EFJ38397.1| hypothetical protein SELMODRAFT_75631 [Selaginella moellendorffii]
Length = 699
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/157 (23%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ P N +++ C L A K+L+ M CVP++ +++I+I + A + +A
Sbjct: 227 GFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGLCKANRVGEA 286
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++++MV+ G P V L ++ A E+ + +ER+ CP + ++++
Sbjct: 287 QQLLEKMVMG-GCSPNVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHNILID 345
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
G + + A + M E G P I +++GL
Sbjct: 346 GLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGL 382
Score = 44.3 bits (103), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 76/157 (48%), Gaps = 1/157 (0%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+V + +++ + ++P + LV SLC + + +A ++L MS + SY+ ++
Sbjct: 534 AVLEQVIDKRDRKFNPSSSAVDALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLL 593
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+S ++ ++A ++ + MV + G P V V + L + ++ A E+++ + + GC
Sbjct: 594 SGLSRLQRWDEATQVFEAMV-SAGPAPEISTVNVVISWLCSAAKVDDAYELVQRMSKLGC 652
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ ++ G + LA K + MTE G P
Sbjct: 653 CPDIETCNTLIGGYCKSGRADLARKLLEEMTEAGLEP 689
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 57/105 (54%), Gaps = 4/105 (3%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
RLL + L+R ++ V + M S G P+ T N ++S LC+ ++ +A ++++ M
Sbjct: 591 RLLSGLSRLQRWDEATQVFE---AMVSAGPAPEISTVNVVISWLCSAAKVDDAYELVQRM 647
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
S C PD+E+ + +IG + + + A ++++EM GL P
Sbjct: 648 SKLGCCPDIETCNTLIGGYCKSGRADLARKLLEEMT-EAGLEPND 691
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 3/93 (3%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
A +E CQ D +L +M G+ + N L+S L + + EA +V + M S
Sbjct: 555 DALVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQVFEAMVS 614
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
A P++ + ++VI + +A K +DA E+++ M
Sbjct: 615 AGPAPEISTVNVVISWLCSAAKVDDAYELVQRM 647
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 111/271 (40%), Gaps = 21/271 (7%)
Query: 82 IDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
+D+ E F + R+ P + +L L + A + R +GC P ++
Sbjct: 318 VDDAYELFQLMERRNCPPNVVTHNILIDGLCKAKRIEEARQLYHRMRETGCAP----DII 373
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCG-------TCNYLVSSLCAIDQLVEAAKV 193
++ ++ C+S V + ++I P+ G T + L A+ ++ +A ++
Sbjct: 374 TYNSLIDGLCKSFQVDEAFQLFQTI---PESGVSAANAVTYSTLFHGYAALGRMADACRI 430
Query: 194 LKGMSSAECVPDLESY-SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+ PDL +Y S+++ T+R V + E + + G PR + V L
Sbjct: 431 FSMLVDKGFSPDLATYTSLILEYCKTSRAV--EVVELVEEMASKGFPPRVNTLSAVLGGL 488
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY---ILAGKTVMGMTERGFI 309
+A+++ + + +GC Y +VVEG ++ + + V+ +R F
Sbjct: 489 FEGNHTERAIQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFN 548
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
P +VE L VG+ A + + +E
Sbjct: 549 PSSSAVDALVESLCQVGKTDDAKQLLHKMSE 579
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 4/172 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD T L+ C + VE ++++ M+S P + + S V+G + T A
Sbjct: 438 GFSPDLATYTSLILEYCKTSRAVEVVELVEEMASKGFPPRVNTLSAVLGGLFEGNHTERA 497
Query: 226 VEMMKEMV---LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
+++ M + +V +A A + ++ + ++I+ +RK P +
Sbjct: 498 IQLFDSMAARGCTDDALIYNLVVEGMARASKHDKALAVLEQVIDKRDRKFNPSS-SAVDA 556
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+VE + + A + + M+ERGF + +++ GL+ + W AT V
Sbjct: 557 LVESLCQVGKTDDAKQLLHKMSERGFAAAVSSYNRLLSGLSRLQRWDEATQV 608
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 85/215 (39%), Gaps = 23/215 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L++ + GC P ++ S + C+ V D + M+ P+ T N
Sbjct: 286 AQQLLEKMVMGGCSP----NVVTYSTVINGLCKQGQVDDAYELFQLMERRNCPPNVVTHN 341
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC ++ EA ++ M C PD+ +Y+ +I + + + ++A ++ +
Sbjct: 342 ILIDGLCKAKRIEEARQLYHRMRETGCAPDIITYNSLIDGLCKSFQVDEAFQLFQT---- 397
Query: 236 MGLMPRQGMVIKVAAALR-------ANREMWKAVEMIEFLERKGCPIGFQGY-EVVVEGC 287
+P G+ A A M A + L KG Y +++E C
Sbjct: 398 ---IPESGVSAANAVTYSTLFHGYAALGRMADACRIFSMLVDKGFSPDLATYTSLILEYC 454
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R + + V M +GF P + V+ GL
Sbjct: 455 KTSRAVEVV-ELVEEMASKGFPPRVNTLSAVLGGL 488
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 46/233 (19%), Positives = 95/233 (40%), Gaps = 21/233 (9%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
K Y L+ S L +A+ +L+ SG + ++ + ++ C + V +
Sbjct: 57 KFTYGILIR-GFSSAGDLDIAIQLLEEMKSSG----FEGNAVVHTTLMKGLCDAGRVVEA 111
Query: 159 LLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
L +++ PD T LV +LC + EA +L+ M + C PD ++S +I +
Sbjct: 112 LEHFRAMAKDCAPDVMTYTALVHALCKAGKFDEAQGMLREMVAQGCAPDTVTFSTLIDGL 171
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER------ 270
A ++++++ ++GM AA + + +E +
Sbjct: 172 CKFGSEEQAFRVLEDVI-------QRGMGNSDAAFETIIQRLCNKYNSVELASKVLGVVI 224
Query: 271 -KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
KG + +V+ G + ++ A K + M E+G +P + ++ GL
Sbjct: 225 AKGFTPTVLMFNLVINGFCKAKDLDSAYKLLEVMIEKGCVPNVFTFTILITGL 277
>gi|302758676|ref|XP_002962761.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
gi|300169622|gb|EFJ36224.1| hypothetical protein SELMODRAFT_165305 [Selaginella moellendorffii]
Length = 707
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ Q+V ++ E S G+ PD T + L LC ++ EA +++K MS C P+L
Sbjct: 91 CKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSGNGCTPNL 150
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I + A KT A E++ E +++ G +P + L + KA++M+E
Sbjct: 151 VTYNTLIDGLCKASKTEKAYELL-ETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVE 209
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+ ++GC Y ++EG
Sbjct: 210 GMLKRGCTPSVITYTALMEG 229
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 75/160 (46%), Gaps = 5/160 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P C T N L+S LC + A ++ S+ VPD+ +YSI+ + + ++A E+
Sbjct: 78 PSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYSILADGLCKRGRIDEAFEL 137
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+KEM N G P + L + KA E++E L G Y ++V+G
Sbjct: 138 VKEMSGN-GCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGL- 195
Query: 289 ECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
C+E L A K V GM +RG P + ++EGL G
Sbjct: 196 -CKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTG 234
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ +++L EM G PD T N ++ LC + A +L M+ C P +Y+
Sbjct: 25 KTDKASEMLHEMVDRGVTPDTVTFNSIMDGLCKAGKFERAHSLLAVMAERNCRPSCCTYN 84
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I + + + A ++ E V + G +P +A L + +A E+++ +
Sbjct: 85 TLISGLCKQQNVDRAKTLVDEFV-SSGFVPDVVTYSILADGLCKRGRIDEAFELVKEMSG 143
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
GC Y +++G + + A + + + GF+P + +V+GL G
Sbjct: 144 NGCTPNLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDK 203
Query: 331 A 331
A
Sbjct: 204 A 204
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 102/244 (41%), Gaps = 10/244 (4%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
+ Y+ L+S L + L A ++ LR+GCV + ++R C+ +
Sbjct: 427 NVTYNTLIS-GLSQTNRLGDAYELMHEMLRNGCVVSA---CTTYNTIIDRLCKEGCLKQA 482
Query: 159 LL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
LL M G + T N + LC +L EA+ +L M + + D SY+ VI
Sbjct: 483 LLLMDHMTGHGVEANTVTYNIFIDRLCKEGRLDEASSLLSEMDT---LRDEVSYTTVIIG 539
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ A + + A ++ +EMV GL + A + + +A+ ++E + ++GC
Sbjct: 540 LCKAEQLDRASKLAREMVAVKGLCITSHTFNLLIDAFTKTKRLDEALTLLELMVQRGCSP 599
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y +V+ + + A + M RG + ++ GL G G K A V
Sbjct: 600 SVITYNMVITCLCKLDKVDKAWELFDEMAVRGIVASSVSYTVLIYGLCGQGRGKEALQVL 659
Query: 336 QRFA 339
+ A
Sbjct: 660 EEMA 663
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 3/118 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A L+ +GCVP V +++ + + + + +L +M G PD T N L
Sbjct: 341 AFPFLESMHSAGCVPDVVSYNIIIDGLF--KASKPKEARQVLDQMIQAGIPPDAVTYNTL 398
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C ++ +A +LK M A PD +Y+ +I +S + DA E+M EM+ N
Sbjct: 399 MAQFCKEERFDDAVGILKNMIKAGVDPDNVTYNTLISGLSQTNRLGDAYELMHEMLRN 456
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 19/216 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCN 175
A +++ +GC P L+ + ++ C+ ++ ++L + S G+ PD T
Sbjct: 134 AFELVKEMSGNGCTP----NLVTYNTLIDGLCKASKTEKAYELLETLVSSGFVPDVVTYT 189
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V LC +L +A K+++GM C P + +Y+ ++ + + ++A + KEMV
Sbjct: 190 IIVDGLCKEGRLDKALKMVEGMLKRGCTPSVITYTALMEGLCRTGRVDEAHHIFKEMVSK 249
Query: 236 MGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
V V +++R E K V+ I +G P Y +++G C+E
Sbjct: 250 DCTADALAYVSLVNGYCKSSRTKEAQKVVDGI-----RGTPY-IDVYNALMDG--YCKEG 301
Query: 294 ILAG--KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
L M RG +P IK V++GL G+
Sbjct: 302 RLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGK 337
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 50/208 (24%), Positives = 93/208 (44%), Gaps = 5/208 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++ + SG VP +L+ L +R + +++ EM G P+ T N L+
Sbjct: 99 AKTLVDEFVSSGFVPDVVTYSILADG-LCKRGRIDEAFELVKEMSGNGCTPNLVTYNTLI 157
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + +A ++L+ + S+ VPD+ +Y+I++ + + + A++M++ M L G
Sbjct: 158 DGLCKASKTEKAYELLETLVSSGFVPDVVTYTIIVDGLCKEGRLDKALKMVEGM-LKRGC 216
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L + +A + + + K C Y +V G + A K
Sbjct: 217 TPSVITYTALMEGLCRTGRVDEAHHIFKEMVSKDCTADALAYVSLVNGYCKSSRTKEAQK 276
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
V G+ RG PYI V +++G G
Sbjct: 277 VVDGI--RG-TPYIDVYNALMDGYCKEG 301
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 143 SAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+ + ++ +M G P+ T N ++ LC ++ EA L+ M S
Sbjct: 291 NALMDGYCKEGRLDEIPNVFEDMACRGCVPNIKTYNIVMDGLCKHGKVDEAFPFLESMHS 350
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
A CVPD+ SY+I+I + A K +A +++ +M+
Sbjct: 351 AGCVPDVVSYNIIIDGLFKASKPKEARQVLDQMI 384
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 56/130 (43%), Gaps = 1/130 (0%)
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M+ + PD+ +Y+I+I + A KT+ A EM+ EMV + G+ P + L
Sbjct: 1 MNERKVAPDVFTYNILIDGLCKASKTDKASEMLHEMV-DRGVTPDTVTFNSIMDGLCKAG 59
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ +A ++ + + C Y ++ G + + A V GF+P +
Sbjct: 60 KFERAHSLLAVMAERNCRPSCCTYNTLISGLCKQQNVDRAKTLVDEFVSSGFVPDVVTYS 119
Query: 317 KVVEGLAGVG 326
+ +GL G
Sbjct: 120 ILADGLCKRG 129
>gi|125602942|gb|EAZ42267.1| hypothetical protein OsJ_26834 [Oryza sativa Japonica Group]
Length = 1088
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 1/174 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ M G+ + T N ++ C A ++L M C PD SY+ +I
Sbjct: 617 VMNNMLQRGHSANLVTYNTIIKGYCDSGNTTSALRILDLMRDGGCKPDEWSYTELICGFC 676
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K A + EMV + GL P + + + ++ A ++E ++R GC
Sbjct: 677 KISKMESAFGLFNEMV-DDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNV 735
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Q Y V++ G + + A + M E G P + +++GL G LA
Sbjct: 736 QTYNVLIHGLTKQNNFSGAEELCKVMIEEGIFPNVVTYTAMIDGLCKNGSTSLA 789
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 88/202 (43%), Gaps = 6/202 (2%)
Query: 88 SFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
SF+ + +S ++ + S L L L + A++ R R V Q LL+ +A +
Sbjct: 336 SFLDMLSQSGLRMGL-FAYSALLIHLSRLGMTAAVMDRYHRMLSEGV-QPNLLIYNAVIN 393
Query: 148 RRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
C+ +VAD MK + PD T ++ C L A +V M+ C P
Sbjct: 394 ALCKDGNVADAETIMKKVFESEMSPDTFTYTSMILGHCRKHDLDSALQVFNQMAKEGCEP 453
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+ +YS +I + + + N+A ++++EM+L+ G++P AL A +
Sbjct: 454 NTVTYSTLINGLCDSGRVNEAFDLIREMILH-GILPTAHTCTGPIIALCDMGCYEDAWRL 512
Query: 265 IEFLERKGCPIGFQGYEVVVEG 286
++ KGC Y ++ G
Sbjct: 513 FVDMKNKGCEPNVYTYTALISG 534
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 44/217 (20%), Positives = 84/217 (38%), Gaps = 8/217 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
H L AL + + + GC P + S + C S V D++ EM G P
Sbjct: 434 HDLDSALQVFNQMAKEGCEP----NTVTYSTLINGLCDSGRVNEAFDLIREMILHGILPT 489
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
TC + +LC + +A ++ M + C P++ +Y+ +I + + A+ +
Sbjct: 490 AHTCTGPIIALCDMGCYEDAWRLFVDMKNKGCEPNVYTYTALISGLCVSGLLKVAIGLFH 549
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M + G+ P + L NR + A ++ + R G Y +++G
Sbjct: 550 RMSRD-GVFPNTVTYNALINILVENRRIKYAFVVLNLMGRNGLFTNIVTYNEMIKGYCIL 608
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + M +RG + +++G G
Sbjct: 609 GDPKKAMLVMNNMLQRGHSANLVTYNTIIKGYCDSGN 645
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S + EM G P+ T L+ C ++L A +L+ M + C P++++Y+++
Sbjct: 682 ESAFGLFNEMVDDGLCPNEVTYTALIDGYCKDEKLDTATSLLEHMKRSGCRPNVQTYNVL 741
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I ++ + A E+ K M+ G+ P + L N A+EM + +G
Sbjct: 742 IHGLTKQNNFSGAEELCKVMI-EEGIFPNVVTYTAMIDGLCKNGSTSLALEMFNKMIEQG 800
Query: 273 CPIGFQGYEVVV-----EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
C Y ++ EG +E E + A + G IP K++E
Sbjct: 801 CLPNLLTYSSLIRALGQEGKVEEAENLFA-----ELERHGLIPDEITYVKMIE 848
>gi|413951210|gb|AFW83859.1| hypothetical protein ZEAMMB73_953172 [Zea mays]
Length = 598
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 50/88 (56%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R A+I+ MK+ G+ PD T + LV LC D+L +A KVL M + CVPD
Sbjct: 343 LTRNGMFDEAAEIVQTMKAQGHQPDNVTYSQLVYGLCKADKLEDARKVLDEMEAEGCVPD 402
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMV 233
L++++++I A + AV+ + EM+
Sbjct: 403 LKTWTLLIHGCCLAGDVDRAVQYLTEMI 430
>gi|224141281|ref|XP_002324003.1| predicted protein [Populus trichocarpa]
gi|222867005|gb|EEF04136.1| predicted protein [Populus trichocarpa]
Length = 626
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 118/260 (45%), Gaps = 42/260 (16%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
IA +YLL+ L+S H + L + R G +P +L+ + + + D L
Sbjct: 218 IACNYLLNGLLKSNH-IHLCWHVYGEMGRVGVIPNSYTFNILTHLFC-KDGDIDKMNDFL 275
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M+ G+ PD T N L++ C +L +A + + M +PDL SY+ ++ +
Sbjct: 276 EKMEEEGFEPDIVTYNTLINGYCGRGRLSDAFYLYRIMYRRCVLPDLVSYTALMNGLCKE 335
Query: 220 RKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA------------ 254
+ +A +++ MV + GL P ++G +++ + L
Sbjct: 336 GRVREAHQLLHRMV-HRGLNPDVVSYNTLICGYCKEGKMLESKSLLYEMIGNGIFPDSFT 394
Query: 255 --------NREMW--KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG- 302
+E W A+ ++ LE+ G I Y+ +V C E R + A KT++
Sbjct: 395 CRVLIQGYRKEGWLISALNLVVELEKFGVSISPDIYDYLVASLCEEDRPF--AAKTLLER 452
Query: 303 MTERGFIPYIKVRQKVVEGL 322
M++RG+IP++++ K++E L
Sbjct: 453 MSQRGYIPHVEIYNKLIESL 472
>gi|449469288|ref|XP_004152353.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 90/204 (44%), Gaps = 9/204 (4%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC+ I +L ++ LE C+ + LEM S G PD T + + S C +
Sbjct: 250 GCL----IDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYSIFIRSSCQEND 305
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L +VL+ +P++ +Y+ VI + + +A +++ EM+ G+ P
Sbjct: 306 LHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMI-ERGVTPDTWSYN 364
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ A + E+ A+ +++ ++R C Y +V++ + + A + M +R
Sbjct: 365 AIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDRANEVWESMGKR 424
Query: 307 GFIPYIKVRQKVVEGLAGVGEWKL 330
GF P + ++ G +WKL
Sbjct: 425 GFYPSVSTYAVMIHGFCK-KKWKL 447
>gi|238478688|ref|NP_174320.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
gi|332193082|gb|AEE31203.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
Length = 806
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 97/215 (45%), Gaps = 12/215 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL +L R+G P LL+ + ++ R + + L M+ +G P+ T N
Sbjct: 261 ALKVLTLMQRAGVEP----NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C + ++ EA ++L+ M S C+PD SY ++G + ++ + ++MK+M
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P Q + L + +A+ ++ + KG I GY +V C+E +
Sbjct: 377 HGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHAL--CKEGRM 434
Query: 296 --AGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGE 327
A + M +G P + VV G +GE
Sbjct: 435 SEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGE 469
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M + G+ P+ + L++ +C + +EA +++ P+ +YS+++ +
Sbjct: 476 LLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLR 535
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K ++A ++++EMVL G P + + +L + +A + +E KGC I
Sbjct: 536 REGKLSEACDVVREMVLK-GFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINV 594
Query: 278 QGYEVVVEG 286
+ V+ G
Sbjct: 595 VNFTTVIHG 603
>gi|414592066|tpg|DAA42637.1| TPA: hypothetical protein ZEAMMB73_021738 [Zea mays]
Length = 768
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 7/194 (3%)
Query: 145 WLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
W+ C+ + + + ++ +G + PD T N L+ LC ++ EAA+ L M + C
Sbjct: 252 WIRGLCEDGRLEEAVALVERMGAYVAPDVVTYNTLMRGLCKDSKVQEAAQYLGRMMNQGC 311
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
+PD +Y+ +I + +A E++K+ V G +P + + L A ++ +A+
Sbjct: 312 IPDDFTYNTIIDGYCKSGMLQEATELLKDAVFK-GFVPDRVTYCSLINGLCAEGDIERAL 370
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECRE-YILAGKTVMG-MTERGFIPYIKVRQKVVE 320
E+ + K Y +V+G CR+ IL VM M E G P I ++
Sbjct: 371 ELFNEAQAKDLKPDLVVYNSLVKGL--CRQGLILHALQVMNEMVEEGCHPDIWTYNIIIN 428
Query: 321 GLAGVGEWKLATVV 334
GL +G A VV
Sbjct: 429 GLCKMGNISDAAVV 442
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 7/186 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G HPD T N +++ LC + + +AA V+ +PD+ +++ +I
Sbjct: 407 VMNEMVEEGCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVFTFNTLIDGYC 466
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCP 274
K + A+++++ M G+ P VI + L + KA E+ E E KGC
Sbjct: 467 KRLKLDSALQLVERM-WTYGIAPD---VITYNSVLNGLCKAGKAKEVNETFEEMILKGCR 522
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y +++E + + A ++ M + G +P ++ G G+ A ++
Sbjct: 523 PNAITYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGFCRNGDLDGAYLL 582
Query: 335 RQRFAE 340
Q+ E
Sbjct: 583 FQKLDE 588
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q I EM S GY PD T LV LC + A L M S VP + ++ +
Sbjct: 612 QMAEKIFGEMISKGYKPDLYTYRILVDGLCKAANVDRAYAHLAEMISKGFVPSMATFGRM 671
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEFLERK 271
+ ++ + ++AV ++ MV MG++P V L +++ A + ++E L +K
Sbjct: 672 LNLLAMNHRVSEAVAIIHIMV-RMGVVPEV-----VDTILSTDKKEIAAPKILVEELMKK 725
Query: 272 GCPIGFQGYEVVVEG 286
G I ++ YEV+ EG
Sbjct: 726 G-HISYRAYEVLHEG 739
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCG 172
L AL +++R G P ++ ++ L C++ + V + EM G P+
Sbjct: 471 LDSALQLVERMWTYGIAP----DVITYNSVLNGLCKAGKAKEVNETFEEMILKGCRPNAI 526
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN-DAVEMMKE 231
T N L+ + C I+QL EA+ V+ M VPD S++ +I R + D ++ +
Sbjct: 527 TYNILIENFCKINQLEEASGVIVRMCQDGLVPDAVSFNTLIHGF--CRNGDLDGAYLLFQ 584
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+ G + A + M A ++ + KG Y ++V+G +
Sbjct: 585 KLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTYRILVDGLCKAA 644
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A + M +GF+P + +++ LA
Sbjct: 645 NVDRAYAHLAEMISKGFVPSMATFGRMLNLLA 676
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 48/247 (19%), Positives = 100/247 (40%), Gaps = 10/247 (4%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VP 135
H ++V++EM+E P I ++ L + + A ++ + G +P V
Sbjct: 403 HALQVMNEMVEE------GCHPDIWTYNIIINGLCKMGNISDAAVVMNDAIVKGYLPDVF 456
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ +R + S ++ M + G PD T N +++ LC + E + +
Sbjct: 457 TFNTLIDGYC--KRLKLDSALQLVERMWTYGIAPDVITYNSVLNGLCKAGKAKEVNETFE 514
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C P+ +Y+I+I + +A ++ M + GL+P + N
Sbjct: 515 EMILKGCRPNAITYNILIENFCKINQLEEASGVIVRMCQD-GLVPDAVSFNTLIHGFCRN 573
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ A + + L+ KG + +++ +A K M +G+ P +
Sbjct: 574 GDLDGAYLLFQKLDEKGYSATADTFNILIGAYSSKLNMQMAEKIFGEMISKGYKPDLYTY 633
Query: 316 QKVVEGL 322
+ +V+GL
Sbjct: 634 RILVDGL 640
>gi|297801450|ref|XP_002868609.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297314445|gb|EFH44868.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 526
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/219 (22%), Positives = 99/219 (45%), Gaps = 8/219 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A++++ + + G P +++ + ++ C++ V + L +M++ G PD
Sbjct: 160 AMSMVNQMVEMGIKP----DVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYT 215
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV+ LC + +A +L+GM + PD+ +++ +I A K DA E+ EM+
Sbjct: 216 SLVNGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALIDAFVKEGKLLDAKELYNEMI-Q 274
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M + P + L + +A +M +E KGC Y ++ G +C++
Sbjct: 275 MSIAPNIFTYTSLINGLCMEGRLDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVED 334
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A K M+++G +++G VG+ +A V
Sbjct: 335 AMKIFYEMSQKGLTGNTITYTTLIQGFGLVGKPNVAQEV 373
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 93/226 (41%), Gaps = 14/226 (6%)
Query: 111 QSLHPLPL--ALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKS 164
LH L AL + + S P+P I RLL A +++ V ++ ++
Sbjct: 45 NGLHSLQFNEALDLFSHMVESR--PLPSIIDFTRLLNVIAKMKK---FDVVINLCKHLQI 99
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+G D TCN L++ C Q A+ L + PD+ +++ +I + +
Sbjct: 100 MGVSNDLYTCNLLMNCFCQSSQPCLASSFLGKLMKLGFEPDIFTFTSLINGFCLGNRIEE 159
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ M+ +MV MG+ P + + +L N + A+ + +E G Y +V
Sbjct: 160 AMSMVNQMV-EMGIKPDVVIYTTIIDSLCKNGHVDNALSLFNQMENYGIRPDVVMYTSLV 218
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
G + A + GM +R P + +++ A V E KL
Sbjct: 219 NGLCNSGRWRDADLLLRGMMKRKIKPDVITFNALID--AFVKEGKL 262
>gi|449455320|ref|XP_004145401.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449471531|ref|XP_004153336.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 670
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
S G+ P+ T N ++ +LC + Q+ A + M C PD+ +YS ++ + R+
Sbjct: 190 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 249
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++AV ++ EM G +P + AL N ++ +A ++++ + KGC Y
Sbjct: 250 DEAVFLLDEMQAE-GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 308
Query: 283 VVEG-CLECR--------EYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G CL+ + E +++ K V G I V+Q+ E
Sbjct: 309 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAE 355
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 5/259 (1%)
Query: 78 RIKVIDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
++ ID +++F +PL+ + Y L++ L + A+ +L GC+P P
Sbjct: 210 KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMN-GLCKERRVDEAVFLLDEMQAEGCLPNP 268
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L A L + A ++ M G P+ T N L+ LC +L +A +L+
Sbjct: 269 VTFNVLIDA-LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 327
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S++CVP+ +Y +I + R+ D V ++ M G + + + + L
Sbjct: 328 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME-ERGQKANEYIYSSLISGLFKE 386
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ AV + + + KGC Y ++G + A + M +GF+P
Sbjct: 387 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTY 446
Query: 316 QKVVEGLAGVGEWKLATVV 334
+++G G+ + A +V
Sbjct: 447 SSLMKGFFKKGDSQKAILV 465
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 1/190 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q D EM +PD T + L++ LC ++ EA +L M + C+P+ +++
Sbjct: 213 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 272
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++I A+S + A +++ M L G +P + + L ++ KA+ ++E +
Sbjct: 273 VLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVS 331
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
C Y ++ G ++ R +M M ERG + ++ GL G+ +
Sbjct: 332 SKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSEN 391
Query: 331 ATVVRQRFAE 340
A + + AE
Sbjct: 392 AVRLWKEMAE 401
>gi|125537408|gb|EAY83896.1| hypothetical protein OsI_39118 [Oryza sativa Indica Group]
Length = 693
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 104/242 (42%), Gaps = 18/242 (7%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-----RLLLSSAWLE 147
R R P+ A +LSY+ L A+ +L + GC P I +L+ + ++
Sbjct: 125 RYRHAPEFA-QLMLSYSRAG--KLRSAMRVLHLMQKDGCAPDISICNMAVNVLVVAGRVD 181
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ + M+ +G PD T N L+ LC ++V+A +++ M C PD
Sbjct: 182 K------ALEFAERMRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKI 235
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
SY V+ + ++ + +++ M + GL P Q + L + +A+E +
Sbjct: 236 SYYTVMSFLCKEKRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRE 295
Query: 268 LERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGV 325
E K + GY +V CL R + K ++G M +G P + VV+G +
Sbjct: 296 SEGKRFRVDEVGYSAIVHSFCLNGR--MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRI 353
Query: 326 GE 327
GE
Sbjct: 354 GE 355
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 43/75 (57%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM S G PD T + +V C I +L +A K++K M +C P+ +++ ++ +
Sbjct: 326 EIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGL 385
Query: 217 STARKTNDAVEMMKE 231
KT++A E++ +
Sbjct: 386 CKVGKTSEAWELLNK 400
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 2/157 (1%)
Query: 80 KVIDEMLESFIPLRPRSRP-KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+V+D M + L+ P KI+Y ++S+ + + +LQR + Q+
Sbjct: 214 RVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKE-KRVEEVRGLLQRMRNDAGLFPDQVT 272
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ L + + + L E + + D + +V S C ++ EA +++ M
Sbjct: 273 YNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMI 332
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
S C PD+ +YS V+ + + A +MMK M N
Sbjct: 333 SKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKN 369
>gi|414591646|tpg|DAA42217.1| TPA: hypothetical protein ZEAMMB73_097907 [Zea mays]
Length = 476
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/256 (24%), Positives = 102/256 (39%), Gaps = 50/256 (19%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR +Y Y +L H LALA + LR+G ++ +++++ L+ C++
Sbjct: 104 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGL----RVDIIIANHLLKGFCEA 159
Query: 153 QSVA---DILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDL 206
+ DILL +G PD + N L+ SLC + +A +L+ M+ A C PD+
Sbjct: 160 KRTDEALDILLHRTPELGCVPDVSSYNILLKSLCNQGKSGQADDLLRMMAEGGAVCSPDV 219
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ VI N A ++ KEMV
Sbjct: 220 VAYTTVIDGFFKEGDVNKACDLFKEMV--------------------------------- 246
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++G P F Y VV + R A + M +G +P ++ G + G
Sbjct: 247 ---QRGIPPDFVTYSSVVHALCKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTG 303
Query: 327 EWKLATVVRQRFAELK 342
+WK A V F E++
Sbjct: 304 QWKEAVRV---FKEMR 316
>gi|356577033|ref|XP_003556634.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Glycine max]
Length = 757
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 1/174 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P T N LV C + ++ EA +L+GM PD+ SYS VI
Sbjct: 404 VLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEAVGILRGMVERGLPPDVVSYSTVIAGFC 463
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
R+ A +M +EMV G++P + L +++ +A ++ + R+G P
Sbjct: 464 RERELGKAFQMKEEMV-EKGVLPDTVTYSSLIQGLCLQQKLVEAFDLFREMMRRGLPPDE 522
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ E A + M +RGF+P ++ GL K+A
Sbjct: 523 VTYTSLINAYCVDGELSKALRLHDEMVQRGFLPDNVTYSVLINGLNKKARTKVA 576
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 71/168 (42%), Gaps = 7/168 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G P+ T L++ +C L A ++ M P+ +Y+ +I
Sbjct: 334 LLSEMVGKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGFC 393
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCP 274
N+A +++ EM+++ G P V+ A + + +AV ++ + +G P
Sbjct: 394 QKGLMNEAYKVLSEMIVS-GFSPS---VVTYNALVHGYCFLGRVQEAVGILRGMVERGLP 449
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y V+ G RE A + M E+G +P +++GL
Sbjct: 450 PDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSLIQGL 497
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/221 (17%), Positives = 96/221 (43%), Gaps = 12/221 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCG 172
L L +++ + G P ++ + ++ C+ + V + + ++++ G +
Sbjct: 223 LEKGLGFMRKMEKEGISP----NVVTYNTLIDASCKKKKVKEAMALLRAMAVGGVAANLI 278
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ N +++ LC ++ E ++++ M VPD +Y+ ++ + + ++ EM
Sbjct: 279 SYNSVINGLCGKGRMSEVGELVEEMRGKGLVPDEVTYNTLVNGFCKEGNLHQGLVLLSEM 338
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V GL P + + + +AVE+ + + +G + Y +++G C++
Sbjct: 339 V-GKGLSPNVVTYTTLINCMCKAGNLSRAVEIFDQMRVRGLRPNERTYTTLIDGF--CQK 395
Query: 293 YIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ A K + M GF P + +V G +G + A
Sbjct: 396 GLMNEAYKVLSEMIVSGFSPSVVTYNALVHGYCFLGRVQEA 436
Score = 37.7 bits (86), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 63/134 (47%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q IL M G PD + + +++ C +L +A ++ + M +PD +YS +
Sbjct: 434 QEAVGILRGMVERGLPPDVVSYSTVIAGFCRERELGKAFQMKEEMVEKGVLPDTVTYSSL 493
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + +K +A ++ +EM + GL P + + A + E+ KA+ + + + ++G
Sbjct: 494 IQGLCLQQKLVEAFDLFREM-MRRGLPPDEVTYTSLINAYCVDGELSKALRLHDEMVQRG 552
Query: 273 CPIGFQGYEVVVEG 286
Y V++ G
Sbjct: 553 FLPDNVTYSVLING 566
>gi|302780401|ref|XP_002971975.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
gi|300160274|gb|EFJ26892.1| hypothetical protein SELMODRAFT_96626 [Selaginella moellendorffii]
Length = 755
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 53/269 (19%), Positives = 118/269 (43%), Gaps = 21/269 (7%)
Query: 64 PNPFSF---LSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPL 116
PN +++ ++ F + H++ ++ EM ES + P + + + +
Sbjct: 159 PNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLA------PNVVTYSTVIHGFCRQTKV 212
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGT 173
A + ++ + +GC+P L+ + L C++ ++L EM+ G PD +
Sbjct: 213 DTAYKLFRQMVENGCMP----NLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFS 268
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ L++ LC ++ A KV + S+ +C PD+ +YS +I + A + ++A ++ ++M
Sbjct: 269 YDTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMR 328
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
N P + L + +A +++E +E + C Y +++G + +
Sbjct: 329 EN-SCEPDVVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQV 387
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M RG P + ++ G
Sbjct: 388 RDAQEVFKRMIVRGIEPNVVTYNSLIHGF 416
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/178 (26%), Positives = 84/178 (47%), Gaps = 9/178 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHP 169
L + +A + L+ +P ++ S +E C + V D +L EM + P
Sbjct: 489 LERIDMARTLFDDMLKQAVLP----DVVTFSTLVEGYCNAGLVDDAERLLEEMVASDCSP 544
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T LV C + ++VEA +VLK M+ C P++ +Y+ +I A A K A ++
Sbjct: 545 DVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYRLL 604
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQGYEVVVEG 286
+EMV N G+ P + ++ +A +++E LER + C Y V+++G
Sbjct: 605 EEMVGN-GVQPNVITYRSLIGGFCGTGDLEEARKILERLERDENCKADMFAYRVMMDG 661
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 56/236 (23%), Positives = 99/236 (41%), Gaps = 16/236 (6%)
Query: 58 EEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RP-KIAYDYLLSYTLQSLHP 115
E C PN ++ + R ++DE E +R R +P K +YD L++ L
Sbjct: 224 ENGCM-PNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSYDTLMA-GLCKTGK 281
Query: 116 LPLALAILQRTLRSGCVP-----VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
+ +AL + + C P I L + L+ C+ + +M+ PD
Sbjct: 282 IDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACK------LFEKMRENSCEPD 335
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T L+ LC D+L EA +VL+ M C P++ +YS +I + + DA E+ K
Sbjct: 336 VVTFTALMDGLCKGDRLQEAQQVLETMEDRNCTPNVITYSSLIDGLCKTGQVRDAQEVFK 395
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
M++ G+ P + + A+ ++E + GC Y +++G
Sbjct: 396 RMIVR-GIEPNVVTYNSLIHGFCMTNGVDSALLLMEEMTATGCLPDIITYNTLIDG 450
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 79/180 (43%), Gaps = 1/180 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MK G P+ T N L++ C + ++ A +LK M + P++ +YS VI
Sbjct: 151 KMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMKESGLAPNVVTYSTVIHGFCRQT 210
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + A ++ ++MV N G MP + + L N M +A E+++ + +G Y
Sbjct: 211 KVDTAYKLFRQMVEN-GCMPNLVTYNTLLSGLCRNGLMDEAYELLDEMRERGLQPDKFSY 269
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++ G + + +A K + P + ++ GL G A + ++ E
Sbjct: 270 DTLMAGLCKTGKIDMALKVFEDNSNGDCPPDVVAYSTLIAGLCKAGRLDEACKLFEKMRE 329
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 4/185 (2%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V LL EM + G PD T N L+ LC + EA ++ M + C PD+
Sbjct: 417 CMTNGVDSALLLMEEMTATGCLPDIITYNTLIDGLCKTGRAPEANRLFGDMKAKFCNPDV 476
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +IG + + A + +M L ++P + + A ++E
Sbjct: 477 ITYSCLIGGFCKLERIDMARTLFDDM-LKQAVLPDVVTFSTLVEGYCNAGLVDDAERLLE 535
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ C Y +V+G + + A + + M +RG P + +++ G
Sbjct: 536 EMVASDCSPDVYTYTSLVDGFCKVGRMVEARRVLKRMAKRGCQPNVVTYTALIDAFCRAG 595
Query: 327 EWKLA 331
+ +A
Sbjct: 596 KPTVA 600
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 62/277 (22%), Positives = 110/277 (39%), Gaps = 14/277 (5%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDE---MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLA 119
+ N +++ F R + IDE +L++ P P P + ++ L L A
Sbjct: 21 DHNVYTYNRLFEALLRARRIDETCHILKNGWP--PGITPNVFTYAVVIQGLCKSGDLDKA 78
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+L+ SG VP I + A C++++ A L +S+ + T ++
Sbjct: 79 CELLEEMRESGPVPDAAIYNFVIHAL----CKARNTAKALDYFRSMECEKNVITWTIMID 134
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC ++L EA M VP+ +Y+++I K + A ++KEM GL
Sbjct: 135 GLCKANRLPEATTYFAKMKKKGTVPNEWTYNVLINGFCKVHKVHRAYLLLKEMK-ESGLA 193
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AG 297
P V ++ A ++ + GC Y ++ G CR ++ A
Sbjct: 194 PNVVTYSTVIHGFCRQTKVDTAYKLFRQMVENGCMPNLVTYNTLLSGL--CRNGLMDEAY 251
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + M ERG P ++ GL G+ +A V
Sbjct: 252 ELLDEMRERGLQPDKFSYDTLMAGLCKTGKIDMALKV 288
>gi|449484422|ref|XP_004156879.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Cucumis sativus]
Length = 529
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 92/215 (42%), Gaps = 9/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A + GC+ I +L ++ LE C+ + LEM S G PD T +
Sbjct: 239 AQKVFDEMRERGCL----IDVLAYNSLLEALCKGGKRDEAYKMFLEMDSNGVDPDADTYS 294
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ S C + L +VL+ +P++ +Y+ VI + + +A +++ EM+
Sbjct: 295 IFIRSSCQENDLHTVYRVLERTKRKNLLPNVFTYNCVIKKLCKDQNVEEAYQILDEMI-E 353
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + A + E+ A+ +++ ++R C Y +V++ + +
Sbjct: 354 RGVTPDTWSYNAIQAYHCDHSEVNSALNLVKRMDRDKCVPDKHTYNMVLKLLVRVGRFDR 413
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
A + M +RGF P + ++ G +WKL
Sbjct: 414 ANEVWESMGKRGFYPSVSTYAVMIHGFCK-KKWKL 447
>gi|357443403|ref|XP_003591979.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355481027|gb|AES62230.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 873
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 96/209 (45%), Gaps = 2/209 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL ++ + GC P + +A L +R Q V D+LL+MK+ G P+ T N LV
Sbjct: 230 ALRLINQMGEYGCCPDNVTYNTVLTA-LCKRSQLTQVRDLLLQMKNSGLFPNRNTYNILV 288
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C + L EAA+V++ M+ +PD+ +Y+ ++ + K ++AV + +M + L
Sbjct: 289 HGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEAVRLRDKME-SFKL 347
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + +R A +++E ++ +G + ++++ + A
Sbjct: 348 VPDVVTYNTLIDGCFEHRGSDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASN 407
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ M E GF P ++ G G+
Sbjct: 408 VMVKMVESGFSPDCFTYNTMINGYCKAGK 436
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/251 (21%), Positives = 109/251 (43%), Gaps = 9/251 (3%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
R + A LL++ + S HP A L R+ + +P P + L++ + + Q
Sbjct: 102 RRKFSDAKSLLLNF-ISSDHPHHSLHAHLLRSDHT--IPKPLLDTSLAAYVISK--QPHL 156
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLC---AIDQLVEAAKVLKGMSSAECVPDLESYSI 211
I +MK + + P+ TCN L+++L + LV + +V + P++ +++I
Sbjct: 157 GHQIFNKMKRLRFRPNLLTCNTLLNALVRSNSSHSLVFSREVFQDAVKLGVQPNVNTFNI 216
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+I + T +A+ ++ +M G P V AL ++ + +++ ++
Sbjct: 217 LIHGYCSDNNTEEALRLINQMG-EYGCCPDNVTYNTVLTALCKRSQLTQVRDLLLQMKNS 275
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G Y ++V G + + A + + MT +G +P + +V GL G+ A
Sbjct: 276 GLFPNRNTYNILVHGYCKLKWLKEAAEVIELMTGKGMLPDVWTYNTMVRGLCDEGKIDEA 335
Query: 332 TVVRQRFAELK 342
+R + K
Sbjct: 336 VRLRDKMESFK 346
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/202 (16%), Positives = 79/202 (39%), Gaps = 13/202 (6%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
W + ++++++M G+ PDC T N +++ C ++ EA K++ M
Sbjct: 395 WFCTEGKIDEASNVMVKMVESGFSPDCFTYNTMINGYCKAGKMAEAYKMMDEMGRKGLKL 454
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D + + ++ M ++ +DA + + G + + + + + +A+++
Sbjct: 455 DTFTLNTLLHTMCLEKQLDDAYTLTMK-ARKRGYILDEVTYGTLIMGYFKDEQADRALKL 513
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKV 318
E ++ G Y ++ G L+GKT + E+G +P +
Sbjct: 514 WEEMKETGIVATIITYNTIIRGL------CLSGKTDQAVDKLNELLEKGLVPDESTSNII 567
Query: 319 VEGLAGVGEWKLATVVRQRFAE 340
+ G G + A + E
Sbjct: 568 IHGYCWEGAVEKAFQFHNKMVE 589
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
S + ++ EMK+ G + T N ++ C ++ EA+ V+ M + PD +Y+
Sbjct: 367 SDAAFKLVEEMKARGVKENGVTHNIMIKWFCTEGKIDEASNVMVKMVESGFSPDCFTYNT 426
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+I A K +A +MM EM GL + + + +++ A + ++
Sbjct: 427 MINGYCKAGKMAEAYKMMDEMG-RKGLKLDTFTLNTLLHTMCLEKQLDDAYTLTMKARKR 485
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G + Y ++ G + + A K M E G + I ++ GL G+
Sbjct: 486 GYILDEVTYGTLIMGYFKDEQADRALKLWEEMKETGIVATIITYNTIIRGLCLSGK 541
>gi|297807667|ref|XP_002871717.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317554|gb|EFH47976.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 533
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 63/265 (23%), Positives = 109/265 (41%), Gaps = 14/265 (5%)
Query: 68 SFLSNFPQNHRIKVIDEML----ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
+ L+ QN R ++ M ESF P I LL L + + A +L
Sbjct: 158 TLLNVLIQNQRFDLVHAMFKNSKESF-----GITPNIFTCNLLVKALCKKNDIESAYKVL 212
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
G VP + ++ R +S +L EM G++PD T L+ C
Sbjct: 213 DEIPAMGLVPNLVTYTTILGGYVAR-GDMESAKRVLEEMLDRGWYPDAITYTVLMDGYCK 271
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ + EAA V+ M E P+ +Y ++I A+ +K+ +A M EM L+ MP
Sbjct: 272 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEM-LDRSFMPDSS 330
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ KV AL + ++ +A + + + C P ++ C E R + + +
Sbjct: 331 LCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR--VSEARKLFD 388
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGE 327
++G IP + ++ G+ GE
Sbjct: 389 EFDKGSIPSLLTYNTLIAGMCEKGE 413
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSS--AWLERRCQSQSVADI--LLEMKSIGYHP 169
H + A + ++ L++ C+P LLS+ WL C+ V++ L + G P
Sbjct: 343 HKVDEACGLWRKMLKNNCMPD---NALLSTLIHWL---CKEGRVSEARKLFDEFDKGSIP 396
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
T N L++ +C +L EA ++ M +C P+ +Y+++I +S + V ++
Sbjct: 397 SLLTYNTLIAGMCEKGELTEAGRLWDDMFERKCKPNAFTYNVLIEGLSKNGNVKEGVRVL 456
Query: 230 KEMVLNMGLMPRQ 242
+EM L G P +
Sbjct: 457 EEM-LESGCFPNK 468
>gi|225434273|ref|XP_002276453.1| PREDICTED: pentatricopeptide repeat-containing protein At5g65560
[Vitis vinifera]
gi|296084392|emb|CBI24780.3| unnamed protein product [Vitis vinifera]
Length = 890
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 7/255 (2%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFI--PLRPRSRPKIAYDYLLSYTLQSLHPL 116
+A +P+ F++ S + R K +D E F+ P + R +++Y L+ + L +
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI-HGLCEAGRI 280
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL + C P + +L A L + ++ EMK G P+ T
Sbjct: 281 NEALKLFADMTEDNCCPTVRTYTVLIYA-LSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ LC +++ EA K+L MS +P + +Y+ +I +DA E++ M N
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN- 398
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P ++ L R++ KA+ ++ + LERK P Y ++ G + +
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP-SLITYNSLIHGQCKVNDLES 457
Query: 296 AGKTVMGMTERGFIP 310
A + + M E G +P
Sbjct: 458 AYRLLSLMNENGLVP 472
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G HPD T L+ C + A +V M C + SY+ +I + A + N+A
Sbjct: 224 GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEA 283
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++ +M + P + AL + +A+ + ++ KGC Y V+++
Sbjct: 284 LKLFADMTED-NCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G + + A K + M+E+G IP + +++G G
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 19/186 (10%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M S+GY PD T + + + L E V+ M+ +PDL +Y+++I +
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANR-----------------EMWKAV 262
T+ A + +K MV + G P +V I + NR E A+
Sbjct: 664 LTHRAFDFLKCMV-DTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNTLEYEIAL 722
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ E + GC I Y ++ G + A V M ERG P + +++
Sbjct: 723 KLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIYNSLLDCC 782
Query: 323 AGVGEW 328
+G +
Sbjct: 783 CKLGVY 788
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 75/172 (43%), Gaps = 8/172 (4%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTC 174
+AL + ++ + GC I + + A + CQ + + + ++ MK G P
Sbjct: 720 IALKLFEKMVEHGCT----IDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSPSEDIY 775
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ C + EA +++ M +P LESY +++ + +N+ + + +L
Sbjct: 776 NSLLDCCCKLGVYAEAVRLVDAMVENGLLPLLESYKLLVCGLYI-EGSNEKAKAVFHGLL 834
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ G + + L + + E+I+ +E KGC Y +++EG
Sbjct: 835 SCGYNYDEVAWKVLIDGLLKRDLVDECSELIDIMEEKGCQPNPLTYSLLIEG 886
>gi|302809819|ref|XP_002986602.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
gi|300145785|gb|EFJ12459.1| hypothetical protein SELMODRAFT_124189 [Selaginella moellendorffii]
Length = 445
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 4/184 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ + DI++EM G+ P T N L+ C DQ+ AAK+L+ M+ ++C P+ +YS
Sbjct: 206 EALGMTDIMVEM---GFCPTIVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFVTYS 262
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I++ + + +A ++++V+ G P + A L EM A + +
Sbjct: 263 IMVQKFAEMGRMVEARAFLEQLVV-CGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAE 321
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+GC Y +VEG + A + + M G +P +++GL G+ +
Sbjct: 322 EGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEH 381
Query: 331 ATVV 334
A +V
Sbjct: 382 AFMV 385
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 76/174 (43%), Gaps = 7/174 (4%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+S G+ T N +V LC + EA KV++ M P++ + ++++ A A +
Sbjct: 144 MESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEPNILTLNLILHAFCKAAR 203
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR---ANREMWKAVEMIEFLERKGCPIGFQ 278
+A+ M MV MG P ++ A L +M A +++E + C F
Sbjct: 204 PEEALGMTDIMV-EMGFCPT---IVTFNALLELFCNTDQMDSAAKLLETMAHSKCKPNFV 259
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++V+ E + A + + G+ P + V V GL GE LA+
Sbjct: 260 TYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLAS 313
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 56/114 (49%), Gaps = 7/114 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A A L++ + G P LL+ +A++ C++ + + L M G + T N
Sbjct: 277 ARAFLEQLVVCGYAP----NLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYN 332
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
LV C + ++ EA +VL+ M + +PD +YS++I + +A + A +M
Sbjct: 333 SLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIEHAFMVM 386
>gi|224135699|ref|XP_002322139.1| predicted protein [Populus trichocarpa]
gi|222869135|gb|EEF06266.1| predicted protein [Populus trichocarpa]
Length = 866
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 95/223 (42%), Gaps = 9/223 (4%)
Query: 125 RTLRSGCVPVPQIR----LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
RT+ G V VP I L+ + L R V+++L EM S G P+ + N L+ +
Sbjct: 273 RTMNEGGV-VPDITTYTYLVDTFGKLNRL---DKVSELLKEMASTGNVPEISSYNVLLEA 328
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
I + +A V + M A CVP+ E+YSI++G + ++ E+ EM ++ P
Sbjct: 329 YARIGNIEDATGVFRLMQEAGCVPNAETYSILLGLYGKHGRYDEVRELFLEMKVS-NTEP 387
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + V + + + + YE ++ C + + A K +
Sbjct: 388 DAATYNTLIDVFGEGGYFKEVVTLFHDMAEENVEPNMETYEGLIFACGKGGLHDDAKKIL 447
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ M+E+G IP K V+E ++ A V E+ S
Sbjct: 448 LHMSEKGMIPSSKAYTGVIEAYGQAAMYEEALVTLNTMNEMGS 490
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 80/172 (46%), Gaps = 6/172 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +EM+ PD T ++S C + E+ + + + ++ +P++ Y
Sbjct: 544 QFEEAIKAYVEMEKSRLVPDERTLEAVLSVYCIAGLVDESVEQFQEIKASGILPNVMCYC 603
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAALRANREMWKAVEMI-EF 267
+++ + + + N+A E++ EM+ N Q G +IK +N W+ VE + +
Sbjct: 604 MMLAVYAKSDRWNEAYELLDEMLTNRASNIHQVIGQMIKGDFDDDSN---WQMVEYVFDK 660
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
L +GC +G + Y ++E + A + + T+RG P + + K+V
Sbjct: 661 LNSEGCGLGMRFYNTLLEALWWLGQKERAVRVLGEATKRGHFPELFRKSKLV 712
>gi|302775294|ref|XP_002971064.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
gi|300161046|gb|EFJ27662.1| hypothetical protein SELMODRAFT_95253 [Selaginella moellendorffii]
Length = 814
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 14/292 (4%)
Query: 42 VDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF-IPLRPRSRPKI 100
V K+Y Q + +A PN FSF R + D+ + F I R R +P +
Sbjct: 130 VAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDL 189
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP------VPQIRLLLSSAWLERRCQSQS 154
+L L A + + G VP +R LL + + +
Sbjct: 190 HTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK------RVKE 243
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
++ +M+ G+ PD N ++ L EA KVL M + CVP +Y I++
Sbjct: 244 AREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVN 303
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
++ A A E+ + M + G P + + + M +A + + + G
Sbjct: 304 SLCKAGTLERAEELFRVMAAS-GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR 362
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ V+++G + + A K+ M G P + +++GL+ +G
Sbjct: 363 PDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 106/257 (41%), Gaps = 17/257 (6%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP-------QNHRIKVIDEML-ESF 89
VR + AK ++ E+ G E+ P+ ++ + +KV+D ML ++
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149
+P ++ Y L++ +L L A + + SG P I L + +
Sbjct: 292 VP------TEVTYGILVN-SLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF-AKS 343
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ + + EM GY PD T ++ LC +AAK + M C P++ +Y
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ +I +S + +A +MK M+ + G P I + + +A ++++ L+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAH-GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD 462
Query: 270 RKGCPIGFQGYEVVVEG 286
+ Q Y +V G
Sbjct: 463 KCSSSPNLQLYSSLVNG 479
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 96/261 (36%), Gaps = 38/261 (14%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L A I QR + GC P +L++ R + + +L +++ +GY PD T
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEKVGYLPDAVTY 581
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSS-----------AECV-------------------- 203
L LC I ++ A K+L+ SS A C
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641
Query: 204 ----PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD +Y +I + +K DA + EM+ G P + AL +
Sbjct: 642 QGGAPDAAAYCCIINGLIKVKKLEDACKFFDEMI-GKGQKPTVATYTALVQALCHAGNVD 700
Query: 260 KAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A E + +G +G Y+ ++ G + + A K M RG +P +
Sbjct: 701 EAFHRFESMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL 760
Query: 319 VEGLAGVGEWKLATVVRQRFA 339
+GL G+ + A + Q A
Sbjct: 761 FDGLVRSGKTEKAQELLQEMA 781
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 9/162 (5%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVA----DILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
C P ++L S+ + C SV D+ + K+ D G C ++ LC +
Sbjct: 464 CSSSPNLQLY--SSLVNGLCDGGSVEKTLDDLFEQSKAAAETLDPGLCCSIIVGLCKTGR 521
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR--KTNDAVEMMKEMVLNMGLMPRQGM 244
L EA ++ + M S C PD +Y+I+I + +R + A ++ ++ +G +P
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLE-KVGYLPDAVT 580
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L E+ +AV+M+E +G Y + G
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 52/269 (19%), Positives = 105/269 (39%), Gaps = 19/269 (7%)
Query: 68 SFLSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
S + F ++ R+K + DEM+E+ RP + ++ L A
Sbjct: 335 SLIHGFAKSGRMKEACSLFDEMVEA------GYRPDVITHTVMIDGLCKSGNFEQAAKSF 388
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSS 180
+ +R GC P ++ + ++ + VA+ MK + H PD T L+
Sbjct: 389 EEMMRGGCKP----NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C + +L EAA++L + P+L+ YS ++ + ++ + E
Sbjct: 445 FCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVNGLCDGGSVEKTLDDLFEQSKAAAETL 504
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGK 298
G+ + L + +A + + + +GC Y +++ G RE + A
Sbjct: 505 DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFA 564
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + + G++P + GL +GE
Sbjct: 565 LLHDLEKVGYLPDAVTYTPLCIGLCKIGE 593
>gi|242063152|ref|XP_002452865.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
gi|241932696|gb|EES05841.1| hypothetical protein SORBIDRAFT_04g033840 [Sorghum bicolor]
Length = 551
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 74/144 (51%), Gaps = 21/144 (14%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M+S G PD T L+ +C + +L A +VL+ M A PD+ +Y+ + +
Sbjct: 345 ELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRVLEEMGRAGFPPDIVTYNCFLNVL 404
Query: 217 STARKTNDAVEMMKEMV----------LNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ RK +DA+E+ + M+ NM ++ M ++ A RA ++W +EM
Sbjct: 405 CSLRKADDALELCERMIEAHCEPSVHTYNMLMV----MFFEMGEAHRA-LDIW--LEM-- 455
Query: 267 FLERKGCPIGFQGYEVVVEGCLEC 290
+ +GC YE++++G +C
Sbjct: 456 --DTRGCQRAIDTYEIMIDGLFDC 477
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 72/167 (43%), Gaps = 7/167 (4%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T + ++ +L D++ E ++L M S C+PD+ +Y +I M K + A +
Sbjct: 322 PTAKTYSIMIVALAKADRMEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRV 381
Query: 229 MKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++EM G P + V +LR + A+E+ E + C Y +++
Sbjct: 382 LEEMG-RAGFPPDIVTYNCFLNVLCSLRKADD---ALELCERMIEAHCEPSVHTYNMLMV 437
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
E E A + M RG I + +++GL G+ + AT
Sbjct: 438 MFFEMGEAHRALDIWLEMDTRGCQRAIDTYEIMIDGLFDCGKTEHAT 484
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 72/169 (42%), Gaps = 5/169 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ N L+ + C + EA V G + + E+YSI+ AR A+++
Sbjct: 215 PETDALNVLLDAFCKCGMVKEAEAVF-GRVKRRLLGNAETYSILFFGWCRARDPKKAMKV 273
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG---FQGYEVVVE 285
++EM+ M P I + + + +A E+ EF+ +G I + Y +++
Sbjct: 274 LEEMI-QMKHTPESFTYIAAIESFCSAGLVSEARELFEFMRTEGSTISSPTAKTYSIMIV 332
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + + M G +P + ++++EG+ VG+ A V
Sbjct: 333 ALAKADRMEECFELLSDMRSCGCMPDVSTYKELIEGMCLVGKLDAAYRV 381
>gi|413950074|gb|AFW82723.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 643
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A AIL R + +GC P V L+ + + R D+ M + G+ P +
Sbjct: 275 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHD--ALDMWRWMVAEGWAPSTVSY 332
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ LC++ L A+ +L M C P++ +YS +I S A A+ + +M
Sbjct: 333 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 392
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ G P + + +A +I+ + + CP + ++ +CR
Sbjct: 393 S-GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVG 451
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A M G +P + +++ GL
Sbjct: 452 RALGVFHEMRRHGCVPNGRTYNELIHGL 479
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 72/176 (40%), Gaps = 9/176 (5%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C V ++L M+ G HP+ T N LV +LC +++ A K+L M+ C PD
Sbjct: 135 CGENMVGAVVLVYDNMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDD 194
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ ++ + + ++A E++ M P + AL M + ++
Sbjct: 195 VTYATIVSVLCKLDRLDEATEVLAAMP------PVAASYNAIVLALCREFRMQEVFSVVS 248
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ +G Y +V+ + E +A + M G P + +V GL
Sbjct: 249 DMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 304
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 1/175 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q V ++ +M G P+ T +V + C +L A +L M C P+
Sbjct: 234 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 293
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +++ ++ + + +DA++M + MV G P + L + ++ A ++
Sbjct: 294 VVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGDLKGASSIL 352
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
+E+ GC + Y +++G + + A M+ G P + V +V+
Sbjct: 353 NSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 407
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC--QSQSVAD-ILLEMKSIGYHPDCGTCN 175
A++I RSGC P + + + ++ Q++S+ D +LLE P+ T N
Sbjct: 383 AISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLE----NCPPNTVTFN 438
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ SLC ++ A V M CVP+ +Y+ +I + DA+ M+ EM
Sbjct: 439 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM 495
>gi|298706415|emb|CBJ29411.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 416
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 50/196 (25%), Positives = 86/196 (43%), Gaps = 12/196 (6%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q IL +M ++G P+ +CN + + Q A +L+GMS A PD SY+
Sbjct: 63 QEAVAILSDMPNVGVRPNVISCNAAIKAWGEAGQWQHALSILRGMSKAGLSPDAISYNTA 122
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK----VAAALRANREMWK-AVEMIEF 267
I A+ A ++ A E+M EM +G+ P V+ +AA R W+ AV +++
Sbjct: 123 ISALGVAGQSEQAQELMSEMS-RLGIEP---TVVTYNSAIAAIARGGGGQWRQAVALVKH 178
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ G Y ++ C + ++ A + GM ++G I + G+
Sbjct: 179 MSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAAISACGEAGQ 238
Query: 328 WKLATVVRQRFAELKS 343
W+ + + AE KS
Sbjct: 239 WEYSVGL---LAEAKS 251
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 34/106 (32%), Positives = 51/106 (48%), Gaps = 2/106 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L E KS+G PD V++ +Q +A +LK M SA PD +++ +I A+
Sbjct: 245 LLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEMLSAGIRPDAAAFTSLIAALG 304
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
+ AVE+++ M MG PR MV AN E+ K E
Sbjct: 305 HDGQWTQAVEILESMP-KMG-APRNAMVYNALITSWANAEVAKGEE 348
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 64/157 (40%), Gaps = 37/157 (23%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-------------- 198
Q+VA ++ M G PD T N L+ + Q +A VLKGM
Sbjct: 171 QAVA-LVKHMSLAGVTPDSITYNSLIVACGKGGQWKQALSVLKGMKKQGLSCDIIGYSAA 229
Query: 199 ---------------------SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
S PDL +Y+ + A + A + + A ++KEM L+ G
Sbjct: 230 ISACGEAGQWEYSVGLLAEAKSLGITPDLVAYTAAVTACADANQRDKATFLLKEM-LSAG 288
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ P + AAL + + +AVE++E + + G P
Sbjct: 289 IRPDAAAFTSLIAALGHDGQWTQAVEILESMPKMGAP 325
>gi|414888175|tpg|DAA64189.1| TPA: hypothetical protein ZEAMMB73_647521 [Zea mays]
Length = 667
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/101 (34%), Positives = 53/101 (52%), Gaps = 4/101 (3%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS+ V +L +M G PD CN V LC ++L +A K L+ M
Sbjct: 235 SRWISALCQSERIELVERLLADMDKFGCFPDIWACNIYVDCLCKHNRLHDALKTLENMWI 294
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
PD+ +Y+ V+G + ++ +AVE+ +EMV GL P
Sbjct: 295 RGTNPDVVTYTTVVGCLCDNKQFAEAVELWEEMV-RRGLKP 334
>gi|242084242|ref|XP_002442546.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
gi|241943239|gb|EES16384.1| hypothetical protein SORBIDRAFT_08g021630 [Sorghum bicolor]
Length = 735
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 57/241 (23%), Positives = 104/241 (43%), Gaps = 19/241 (7%)
Query: 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-----VPQIRLLLSSAWLER 148
PR + A+ +LSY+ L A+ +LQ + GC P + +L+ + +++
Sbjct: 158 PRGTRQFAH-LMLSYSRAG--KLRSAMRVLQLMQKDGCAPDICICNMAVNVLVVAGRIDK 214
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ M+ +G PD T N L+ LC ++V+A +++ M C+PD S
Sbjct: 215 ------ALEFAERMRRVGVDPDVVTYNCLIKGLCGARRIVDALEMISSMLQNGCLPDKIS 268
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y V+ + ++ D +++ M + G+ P Q + L + +A+ +
Sbjct: 269 YFTVMSFLCKEKRVADVQNLLERMS-DAGIFPDQVTYNMLIHGLAKHGHADEALSFLRES 327
Query: 269 ERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVG 326
E K + GY V CL R + K ++G M +G P + VV+G +G
Sbjct: 328 EGKRFRVDEVGYSATVHSFCLNGR--MAEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIG 385
Query: 327 E 327
E
Sbjct: 386 E 386
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 60/234 (25%), Positives = 92/234 (39%), Gaps = 51/234 (21%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI--LLE-MKSIGYHPDCGTCN 175
AL ++ L++GC+P +I ++L C+ + VAD+ LLE M G PD T N
Sbjct: 250 ALEMISSMLQNGCLP-DKISYFTVMSFL---CKEKRVADVQNLLERMSDAGIFPDQVTYN 305
Query: 176 YL-----------------------------------VSSLCAIDQLVEAAKVLKGMSSA 200
L V S C ++ EA +++ M S
Sbjct: 306 MLIHGLAKHGHADEALSFLRESEGKRFRVDEVGYSATVHSFCLNGRMAEAKEIIGEMISK 365
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C PD+ +YS V+ + + A +MMK M N G P + A L ++ K
Sbjct: 366 GCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN-GCKPN---TVTHTALLNGLCKVGK 421
Query: 261 AVEMIEFLERK----GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ E E L + P Y VV+ G + + VM M ++GF P
Sbjct: 422 SSEAWELLNKSEEEWWTPSAIT-YSVVMHGFRREGKLKESCDVVMQMLQKGFFP 474
>gi|302757207|ref|XP_002962027.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
gi|300170686|gb|EFJ37287.1| hypothetical protein SELMODRAFT_77588 [Selaginella moellendorffii]
Length = 814
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 62/292 (21%), Positives = 113/292 (38%), Gaps = 14/292 (4%)
Query: 42 VDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF-IPLRPRSRPKI 100
V K+Y Q + +A PN FSF R + D+ + F I R R +P +
Sbjct: 130 VAEKNYSQCYAIHEEMLKAGIAPNTFSFNILIRSFARTRRADDAVTCFEIMKRKRCKPDL 189
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP------VPQIRLLLSSAWLERRCQSQS 154
+L L A + + G VP +R LL + + +
Sbjct: 190 HTFLILVDCLCKAGMDEKAFEVFHEMMAMGFVPPDRALHTAMVRTLLKAK------RVKE 243
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
++ +M+ G+ PD N ++ L EA KVL M + CVP +Y I++
Sbjct: 244 AREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKACVPTEVTYGILVN 303
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
++ A A E+ + M + G P + + + M +A + + + G
Sbjct: 304 SLCKAGTLERAEELFRVMAAS-GFRPNSVIYTSLIHGFAKSGRMKEACSLFDEMVEAGYR 362
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ V+++G + + A K+ M G P + +++GL+ +G
Sbjct: 363 PDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTYTTIIQGLSKIG 414
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 107/257 (41%), Gaps = 17/257 (6%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP-------QNHRIKVIDEML-ESF 89
VR + AK ++ E+ G E+ P+ ++ + +KV+D ML ++
Sbjct: 232 VRTLLKAKRVKEAREVFGQMEKCGFPPDAIAYNTMIDGLAKAGHAQEALKVLDNMLAKAC 291
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149
+P ++ Y L++ +L L A + + SG P I L + +
Sbjct: 292 VP------TEVTYGILVN-SLCKAGTLERAEELFRVMAASGFRPNSVIYTSLIHGF-AKS 343
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ + + EM GY PD T ++ LC +AAK + M C P++ +Y
Sbjct: 344 GRMKEACSLFDEMVEAGYRPDVITHTVMIDGLCKSGNFEQAAKSFEEMMRGGCKPNVVTY 403
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ +I +S + +A +MK M+ + G P I + + +A ++++ L+
Sbjct: 404 TTIIQGLSKIGRVANAFRIMKGMIAH-GCFPDSVTYICLLDGFCKLGRLDEAAQLLDELD 462
Query: 270 RKGCPIGFQGYEVVVEG 286
+ Q Y +V+G
Sbjct: 463 KCSSSPNLQLYSSLVKG 479
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 9/162 (5%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEM----KSIGYHPDCGTCNYLVSSLCAIDQ 186
C P ++L S+ ++ C SV + L ++ K+ + D G C ++ LC +
Sbjct: 464 CSSSPNLQLY--SSLVKGLCDGGSVENTLDDLFEQSKAAAENLDPGLCCSIIVGLCKTGR 521
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR--KTNDAVEMMKEMVLNMGLMPRQGM 244
L EA ++ + M S C PD +Y+I+I + +R + A ++ ++ + +G +P
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEM-VGYLPDAVT 580
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L E+ +AV+M+E +G Y + G
Sbjct: 581 YTPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTG 622
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 96/261 (36%), Gaps = 38/261 (14%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L A I QR + GC P +L++ R + + +L +++ +GY PD T
Sbjct: 522 LDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVERAFALLHDLEMVGYLPDAVTY 581
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSS-----------AECV-------------------- 203
L LC I ++ A K+L+ SS A C
Sbjct: 582 TPLCIGLCKIGEVDRAVKMLEEASSRGWNADVVAYTALCTGLCYQGQVDRAVSLFQEMVR 641
Query: 204 ----PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD +Y +I + +K DA + EM+ G P + AL +
Sbjct: 642 QGGAPDAAAYCCIINGLIKGKKLEDACKFFDEMI-GKGQKPTVATYTALVQALCHAGNVD 700
Query: 260 KAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A E + +G +G Y+ ++ G + + A K M RG +P +
Sbjct: 701 EAFHRFEGMLARGELVGSVMIYDALIHGFCKALKVDAALKLFEDMISRGNVPTAVTSASL 760
Query: 319 VEGLAGVGEWKLATVVRQRFA 339
+GL G+ + A + Q A
Sbjct: 761 FDGLVRSGKTEKAQELLQEMA 781
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 56/273 (20%), Positives = 107/273 (39%), Gaps = 27/273 (9%)
Query: 68 SFLSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
S + F ++ R+K + DEM+E+ RP + ++ L A
Sbjct: 335 SLIHGFAKSGRMKEACSLFDEMVEA------GYRPDVITHTVMIDGLCKSGNFEQAAKSF 388
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSS 180
+ +R GC P ++ + ++ + VA+ MK + H PD T L+
Sbjct: 389 EEMMRGGCKP----NVVTYTTIIQGLSKIGRVANAFRIMKGMIAHGCFPDSVTYICLLDG 444
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM----STARKTNDAVEMMKEMVLNM 236
C + +L EAA++L + P+L+ YS ++ + S +D E K N+
Sbjct: 445 FCKLGRLDEAAQLLDELDKCSSSPNLQLYSSLVKGLCDGGSVENTLDDLFEQSKAAAENL 504
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL- 295
G+ + L + +A + + + +GC Y +++ G RE +
Sbjct: 505 ----DPGLCCSIIVGLCKTGRLDEACRIFQRMVSEGCKPDATTYNILINGLCRSRENRVE 560
Query: 296 -AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + + G++P + GL +GE
Sbjct: 561 RAFALLHDLEMVGYLPDAVTYTPLCIGLCKIGE 593
>gi|449502431|ref|XP_004161638.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 646
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 78/167 (46%), Gaps = 10/167 (5%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
S G+ P+ T N ++ +LC + Q+ A + M C PD+ +YS ++ + R+
Sbjct: 166 NSKGFQPNLLTYNLIIKALCKLGQIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRV 225
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++AV ++ EM G +P + AL N ++ +A ++++ + KGC Y
Sbjct: 226 DEAVFLLDEMQAE-GCLPNPVTFNVLIDALSKNGDLSRAAKLVDNMFLKGCVPNEVTYNT 284
Query: 283 VVEG-CLECR--------EYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G CL+ + E +++ K V G I V+Q+ E
Sbjct: 285 LIHGLCLKGKLDKALSLLEKMVSSKCVPNQVTYGTIINGLVKQRRAE 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 111/259 (42%), Gaps = 5/259 (1%)
Query: 78 RIKVIDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
++ ID +++F +PL+ + Y L++ L + A+ +L GC+P P
Sbjct: 186 KLGQIDRAVDTFREMPLKNCNPDVFTYSTLMN-GLCKERRVDEAVFLLDEMQAEGCLPNP 244
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L A L + A ++ M G P+ T N L+ LC +L +A +L+
Sbjct: 245 VTFNVLIDA-LSKNGDLSRAAKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKALSLLE 303
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S++CVP+ +Y +I + R+ D V ++ M G + + + + L
Sbjct: 304 KMVSSKCVPNQVTYGTIINGLVKQRRAEDGVHILMSME-ERGQKANEYIYSSLISGLFKE 362
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ AV + + + KGC Y ++G + A + M +GF+P
Sbjct: 363 GKSENAVRLWKEMAEKGCKPNVVVYGAFIDGLCRDEKPDEAEDILQEMLSKGFLPNAFTY 422
Query: 316 QKVVEGLAGVGEWKLATVV 334
+++G G+ + A +V
Sbjct: 423 SSLMKGFFKKGDSQKAILV 441
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 84/190 (44%), Gaps = 1/190 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q D EM +PD T + L++ LC ++ EA +L M + C+P+ +++
Sbjct: 189 QIDRAVDTFREMPLKNCNPDVFTYSTLMNGLCKERRVDEAVFLLDEMQAEGCLPNPVTFN 248
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++I A+S + A +++ M L G +P + + L ++ KA+ ++E +
Sbjct: 249 VLIDALSKNGDLSRAAKLVDNMFLK-GCVPNEVTYNTLIHGLCLKGKLDKALSLLEKMVS 307
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
C Y ++ G ++ R +M M ERG + ++ GL G+ +
Sbjct: 308 SKCVPNQVTYGTIINGLVKQRRAEDGVHILMSMEERGQKANEYIYSSLISGLFKEGKSEN 367
Query: 331 ATVVRQRFAE 340
A + + AE
Sbjct: 368 AVRLWKEMAE 377
>gi|326506436|dbj|BAJ86536.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 616
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/238 (22%), Positives = 95/238 (39%), Gaps = 34/238 (14%)
Query: 98 PKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---Q 153
P AY Y + +L + + AL +L GC P + LE C+ +
Sbjct: 105 PPNAYTYFPIVRSLCARGLIADALTVLDEMPLRGCAATPP----MCHVILEAACRGGGFR 160
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
S L + + G D G CN +VS++C + E ++L+ + S C PD+ SY+ V+
Sbjct: 161 SAVRALQVLHAKGCTLDSGNCNLVVSAICEQGCVDEGVELLRKLPSFGCEPDIVSYNAVL 220
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ A++ +D E+M EMV + E + + GC
Sbjct: 221 KGLCMAKRWDDVEELMVEMV--------------------------RVHEALSQMPEHGC 254
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y +++G + + +A + M G P + V++GL W+ A
Sbjct: 255 TPDLRMYATIIDGICKDGHHEVANDILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEA 312
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 72/291 (24%), Positives = 128/291 (43%), Gaps = 17/291 (5%)
Query: 44 AKDYQQIPELLGS-FEEACQ-NPNPFSFLSNF-PQNHRIKVIDEMLESFIPLRPRSRPK- 99
A+ +++ +LL F+E C + F+ L +F QN + + E+LE L P
Sbjct: 306 AERWEEAEDLLAEMFQEDCPLDDVTFNILVDFFCQNGLVDRVIELLEQM--LEHGCIPDV 363
Query: 100 IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD- 157
I Y +++ + + L + A+ +L+ GC P + + L+ C+++ D
Sbjct: 364 ITYTTVINGFCKEGL--VDEAVMLLKNMSACGCKP----NTISYTIVLKGLCRAERWVDA 417
Query: 158 --ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
++ M G P+ T N L++ +C +A ++LK M C PDL SYS VI
Sbjct: 418 QELISHMIQQGCLPNPVTFNTLINFMCKKGLAEQAIELLKQMLVNGCSPDLISYSTVIDG 477
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ A KT +A+E++ M+ N G+ P + +A+AL K ++M + ++
Sbjct: 478 LGKAGKTEEALELLNVMI-NKGITPNTIIYSSMASALSREGRTDKIIQMFDSIQDATVRS 536
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V+ + E A M G +P ++ GLA G
Sbjct: 537 DAALYNAVISSLCKRWETDRAIDFFAYMVSNGCMPNESTYTILIRGLASEG 587
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 70/154 (45%), Gaps = 1/154 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DIL M S G P+ N ++ LC+ ++ EA +L M +C D +++I++
Sbjct: 279 DILSRMPSYGLKPNVVCYNTVLKGLCSAERWEEAEDLLAEMFQEDCPLDDVTFNILVDFF 338
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +E++++M L G +P V + +AV +++ + GC
Sbjct: 339 CQNGLVDRVIELLEQM-LEHGCIPDVITYTTVINGFCKEGLVDEAVMLLKNMSACGCKPN 397
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y +V++G ++ A + + M ++G +P
Sbjct: 398 TISYTIVLKGLCRAERWVDAQELISHMIQQGCLP 431
>gi|168007580|ref|XP_001756486.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162692525|gb|EDQ78882.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 528
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/290 (21%), Positives = 111/290 (38%), Gaps = 40/290 (13%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRL 139
+D +E F ++ + Y Y L L + A + L G P +P L
Sbjct: 116 LDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTPNIPTYNL 175
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ + + Q + EMK G+ P T N L+ +LC+ ++ A K+ M+
Sbjct: 176 LMDA--FRKVGQLDMALGLFAEMKRRGFQPSVVTYNILLDALCSAGRVGAARKLFHKMTG 233
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV---LNMGLMPRQGMVIKVAAALRANR 256
C PD +YS ++ + + + +A ++ +EMV + + L+ ++ +A A +R
Sbjct: 234 DGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAKAGNMDR 293
Query: 257 EMWK--------------------------------AVEMIEFLERKGCPIGFQGYEVVV 284
+WK A E+ + GC Y +++
Sbjct: 294 -VWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCKPDLISYNILI 352
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + A + + M E GFIP K ++ LA G+ A V
Sbjct: 353 DSYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIHWLATDGQVDEAFAV 402
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 81/180 (45%), Gaps = 1/180 (0%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L + V ++ EM G+HPD + N ++ +L ++ A +V M + C
Sbjct: 283 ATLAKAGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAREVFARMVESGCK 342
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PDL SY+I+I + + A +M++EMV G +P + L + ++ +A
Sbjct: 343 PDLISYNILIDSYARFGDAAQARQMLEEMV-EAGFIPETKTYNSLIHWLATDGQVDEAFA 401
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
++E +E GC Y +++ + E A + M ++G P ++GLA
Sbjct: 402 VLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLA 461
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/146 (28%), Positives = 68/146 (46%), Gaps = 13/146 (8%)
Query: 80 KVIDEMLES-FIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQ 136
++++EM+E+ FIP Y+ L+ + L + + A A+L+ +GC P V
Sbjct: 366 QMLEEMVEAGFIP------ETKTYNSLIHW-LATDGQVDEAFAVLEEMETAGCRPDVVTY 418
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
RL+ L +R ++Q A + +MK G PD + + L D+L EA + K
Sbjct: 419 NRLM---DMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRIDGLAFDDRLDEALVLFKD 475
Query: 197 MSSAECVPDLESYSIVIGAMSTARKT 222
M + C D Y I+I A A T
Sbjct: 476 MKAVGCPVDKAMYRILIRAAHRAGDT 501
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 85/198 (42%), Gaps = 18/198 (9%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSF--------LSNFPQNHRIKVIDEMLESFIPLRPR 95
A + ++ +L+ +P+ FSF +N P R +V M+ES
Sbjct: 288 AGNMDRVWKLMKEMSRKGFHPDAFSFNTIMDALGKANKPDAAR-EVFARMVES------G 340
Query: 96 SRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
+P I+Y+ L+ + A +L+ + +G +P + L WL Q
Sbjct: 341 CKPDLISYNILID-SYARFGDAAQARQMLEEMVEAGFIPETKTYNSLIH-WLATDGQVDE 398
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+L EM++ G PD T N L+ L + AA++ + M PD SY++ I
Sbjct: 399 AFAVLEEMETAGCRPDVVTYNRLMDMLGKRGENQRAARLFQQMKDKGVEPDTLSYAVRID 458
Query: 215 AMSTARKTNDAVEMMKEM 232
++ + ++A+ + K+M
Sbjct: 459 GLAFDDRLDEALVLFKDM 476
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 74/190 (38%), Gaps = 5/190 (2%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
+ R Q S ++ EMK G PD T +LV++L ++ EA M P
Sbjct: 109 YFGRSGQLDSAMEMFREMKIKGSEPDEYTYGFLVNALGKAGRVQEARSFFDAMLERGLTP 168
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
++ +Y++++ A + + A+ + EM G P + AL + + A ++
Sbjct: 169 NIPTYNLLMDAFRKVGQLDMALGLFAEMK-RRGFQPSVVTYNILLDALCSAGRVGAARKL 227
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+ GC Y +V G + A K M +RG + ++ LA
Sbjct: 228 FHKMTGDGCSPDSYTYSTLVNGLGKSGRVEEAHKVFREMVDRGVAVDLVNYNSLLATLAK 287
Query: 325 VGE----WKL 330
G WKL
Sbjct: 288 AGNMDRVWKL 297
>gi|242082131|ref|XP_002445834.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
gi|241942184|gb|EES15329.1| hypothetical protein SORBIDRAFT_07g026590 [Sorghum bicolor]
Length = 426
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 56/228 (24%), Positives = 97/228 (42%), Gaps = 5/228 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L+R R G P L +W +++ A L +M S G+ P + LV
Sbjct: 200 AYKLLRRMARKGVAPDRATFSTLVDSWCAAGKLNEAQA-FLDDMASRGFRPPVRGRDLLV 258
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L L EA M+ +PD+ +++ + A+ A + AV ++ + + GL
Sbjct: 259 DGLVRAGHLEEAKAFALRMTKEGILPDVATFNSLAEALCNAGDVDFAVALLADAS-SRGL 317
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEF---LERKGCPIGFQGYEVVVEGCLECREYIL 295
P AA ++A + + + F ++ KG P Y ++V+ C+ ++
Sbjct: 318 CPDISHTSLYAAIIKALCKAGRFADAFAFFGDMKMKGHPPNRPVYVMLVKMCVRGGRFVE 377
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
A ++ M+E GF P VV+GL G+ LA + Q LK
Sbjct: 378 AANYLVEMSEAGFTPRAPTFNAVVDGLRHCGKHDLARRLEQLEVSLKG 425
>gi|302756343|ref|XP_002961595.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
gi|300170254|gb|EFJ36855.1| hypothetical protein SELMODRAFT_76510 [Selaginella moellendorffii]
Length = 603
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 116/249 (46%), Gaps = 11/249 (4%)
Query: 82 IDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
D+ E F + R P + Y+ ++ + + L A ++++ + G VP +
Sbjct: 61 FDDARELFADMNRRGCPPSPVTYNVIIDASCKR-GMLEEACDLIKKMIEDGHVP----DV 115
Query: 140 LLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ + ++ C+S V + LL EM+ +G P+ + N ++ LC ++ +A +V
Sbjct: 116 VTYNTVMDGLCKSGRVEEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQVFHE 175
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + + PD SY I+I ++ A K N+A ++ + M L+ G+ P V +
Sbjct: 176 MEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRM-LDSGITPSAVTYNVVIHGMCLAY 234
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ +A+E+ + + KGC + ++++ + + A + + MT+ G +P +
Sbjct: 235 TLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRMTDDGHVPDVVTYS 294
Query: 317 KVVEGLAGV 325
++ GL +
Sbjct: 295 TLISGLCSI 303
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/279 (24%), Positives = 121/279 (43%), Gaps = 12/279 (4%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ +S R+ +LE + + + +P + L + L + A +L +
Sbjct: 295 TLISGLCSIARVDDARHLLEDMV--KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 352
Query: 128 RSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
SG P V L+ R Q++ ++L +M + G P+ T LVS LC ++
Sbjct: 353 SSGQSPDVVTYNTLVHGHC--RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 410
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L EA V M S+ C P+L +Y+ +I +A + + +++ EMV G+ P +
Sbjct: 411 LPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC-AGISPDHVVYG 469
Query: 247 KVAAALRANREMWKAVEMI----EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+AA L + +A+E++ E L + G + Y V+G L+ + +A V
Sbjct: 470 TLAAELCKSGRSARALEILREGRESLRSE--AWGDEVYRFAVDGLLDAGKMEMALGFVRD 527
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
M G +P + +V GL G+ A V + +L
Sbjct: 528 MVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDL 566
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 116/269 (43%), Gaps = 18/269 (6%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
ID+ + F + R P ++ Y +L L L A + +R L SG P +
Sbjct: 166 IDQACQVFHEMEARDIPPDSWSYGILIDGLAKAGKLNEAYKLFRRMLDSGITPSA----V 221
Query: 141 LSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+ + C + ++ + L M+S G P T N L+ + C ++ EA ++LK M
Sbjct: 222 TYNVVIHGMCLAYTLDEALELFKSMRSKGCRPSRFTFNILIDAHCKRGKMDEAFRLLKRM 281
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVAAALRA 254
+ VPD+ +YS +I + + + +DA ++++MV ++ + ++ + A R
Sbjct: 282 TDDGHVPDVVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGR- 340
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A E+++ + G Y +V G + A + + M RG P +
Sbjct: 341 ---IKEAREVLDAMVSSGQSPDVVTYNTLVHGHCRAGQTERARELLSDMVARGLAPNVVT 397
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+V GL A V FA++KS
Sbjct: 398 YTALVSGLCKANRLPEACGV---FAQMKS 423
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 60/132 (45%), Gaps = 5/132 (3%)
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M+ PD SY I+I ++ A K NDA ++ +++ L+ G+ P + L
Sbjct: 1 MNERNVSPDSWSYGILIDGLAKAGKLNDARDLFQKL-LHSGVTPSTVAYTSLIHGLCMAN 59
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKV 314
A E+ + R+GCP Y V+++ C+ +L A + M E G +P +
Sbjct: 60 SFDDARELFADMNRRGCPPSPVTYNVIIDA--SCKRGMLEEACDLIKKMIEDGHVPDVVT 117
Query: 315 RQKVVEGLAGVG 326
V++GL G
Sbjct: 118 YNTVMDGLCKSG 129
>gi|147857775|emb|CAN80799.1| hypothetical protein VITISV_019809 [Vitis vinifera]
Length = 1099
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/255 (23%), Positives = 111/255 (43%), Gaps = 7/255 (2%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFI--PLRPRSRPKIAYDYLLSYTLQSLHPL 116
+A +P+ F++ S + R K +D E F+ P + R +++Y L+ + L +
Sbjct: 222 QAGLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLI-HGLCEAGRI 280
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL + C P + +L A L + ++ EMK G P+ T
Sbjct: 281 NEALKLFADMTEDNCCPTVRTYTVLIYA-LSGSGRKVEALNLFNEMKEKGCEPNVHTYTV 339
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ LC +++ EA K+L MS +P + +Y+ +I +DA E++ M N
Sbjct: 340 LIDGLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEGMIDDAFEILDLMESN- 398
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P ++ L R++ KA+ ++ + LERK P Y ++ G + +
Sbjct: 399 SCGPNTRTYNELICGLCKKRKVHKAMALLNKMLERKLSP-SLITYNSLIHGQCKVNDLES 457
Query: 296 AGKTVMGMTERGFIP 310
A + + M E G +P
Sbjct: 458 AYRLLSLMNENGLVP 472
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G HPD T L+ C + A +V M C + SY+ +I + A + N+A
Sbjct: 224 GLHPDTFTYTSLILGHCRNKGVDNAYEVFLIMPQKGCQRNEVSYTNLIHGLCEAGRINEA 283
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+++ +M + P + AL + +A+ + ++ KGC Y V+++
Sbjct: 284 LKLFADMTED-NCCPTVRTYTVLIYALSGSGRKVEALNLFNEMKEKGCEPNVHTYTVLID 342
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G + + A K + M+E+G IP + +++G G
Sbjct: 343 GLCKENKMDEARKMLSEMSEKGLIPSVVTYNALIDGYCKEG 383
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 69/179 (38%), Gaps = 30/179 (16%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M S+GY PD T + + + L E V+ M+ +PDL +Y+++I +
Sbjct: 604 HMVSLGYQPDVCTYTAFLHAYFSQGMLEEVDDVIAKMNEEGILPDLVTYTVLIDGYARLG 663
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANR----------------------E 257
T+ A + +K MV + G P +V I + NR +
Sbjct: 664 LTHRAFDFLKCMV-DTGCKPSLYIVSILIKNLSHENRMKETRSEIGIDSVSNVNSVDIAD 722
Query: 258 MWKAVE------MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+WK +E + E + GC I Y ++ G + A V M ERG P
Sbjct: 723 VWKTLEYEIALKLFEKMVEHGCTIDVSIYGALIAGFCQQERLEEAQGLVHHMKERGMSP 781
>gi|302820653|ref|XP_002991993.1| hypothetical protein SELMODRAFT_42424 [Selaginella moellendorffii]
gi|300140235|gb|EFJ06961.1| hypothetical protein SELMODRAFT_42424 [Selaginella moellendorffii]
Length = 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 64/115 (55%), Gaps = 7/115 (6%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLV 178
+L++ + SGCVP L +A +E C+ + V + ++ EM S G PD T +L+
Sbjct: 180 LLRQMVESGCVP----ELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDAATHRFLL 235
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+LC +D+L EA + ++ M + C+PD +YS +I + + +A + KEM+
Sbjct: 236 EALCKMDKLDEAHRHVQRMIATGCLPDTVTYSFLIKKLCKEGRPMEAHRIFKEMI 290
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL +M+ +G+H D G N ++ L ++ +A M DLESYSIV+ A+
Sbjct: 42 ILAQMEKMGFHIDVGLHNAILRGLIRAKRVDDALDHFAKMEKNR-DTDLESYSIVVSALC 100
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + AV+++ M +P G+ ++ A+ + ++ A + E + G
Sbjct: 101 DEKRVDKAVDLLYSMN-EESFLPDVGIYNRIIEAM-SELQLHGAYLLFEQMIEAGVLPNS 158
Query: 278 QGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGV 325
+ +V GC + R ++ G ++ M E G +P + V+EGL V
Sbjct: 159 ATFSFLVRGCFK-RGFLDEGSELLRQMVESGCVPELATFNAVIEGLCKV 206
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + ++ + +G +P L +R + +++L +M G P+ T N ++
Sbjct: 142 AYLLFEQMIEAGVLPNSATFSFLVRGCFKRGFLDEG-SELLRQMVESGCVPELATFNAVI 200
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ A V+ M+S C PD ++ ++ A+ K ++A ++ M+ G
Sbjct: 201 EGLCKVRRVENARWVMNEMASQGCSPDAATHRFLLEALCKMDKLDEAHRHVQRMIAT-GC 259
Query: 239 MP 240
+P
Sbjct: 260 LP 261
>gi|224030417|gb|ACN34284.1| unknown [Zea mays]
gi|413950072|gb|AFW82721.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 647
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A AIL R + +GC P V L+ + + R D+ M + G+ P +
Sbjct: 279 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGR--VHDALDMWRWMVAEGWAPSTVSY 336
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ LC++ L A+ +L M C P++ +YS +I S A A+ + +M
Sbjct: 337 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 396
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ G P + + +A +I+ + + CP + ++ +CR
Sbjct: 397 S-GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVG 455
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A M G +P + +++ GL
Sbjct: 456 RALGVFHEMRRHGCVPNGRTYNELIHGL 483
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 76/188 (40%), Gaps = 9/188 (4%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ+ V +L EM G PD T +VS LC +D+L EA +VL M P
Sbjct: 174 CQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP-----PVA 228
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+ ++ A+ + + ++ +MV GL P + A E+ A ++
Sbjct: 229 ASYNAIVLALCREFRMQEVFSVVSDMV-GRGLQPNVITYTTIVDAFCKAGELRMACAILA 287
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ GC + +V G + A M G+ P ++ GL VG
Sbjct: 288 RMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVG 347
Query: 327 EWKLATVV 334
+ K A+ +
Sbjct: 348 DLKGASSI 355
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 67/162 (41%), Gaps = 6/162 (3%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M+ G HP+ T N LV +LC +++ A K+L M+ C PD +Y+ ++ +
Sbjct: 153 NMRKDGVHPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCPPDDVTYATIVSVLCKLD 212
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A E++ M P + AL M + ++ + +G Y
Sbjct: 213 RLDEATEVLAAMP------PVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVITY 266
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+V+ + E +A + M G P + +V GL
Sbjct: 267 TTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGL 308
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 111/267 (41%), Gaps = 24/267 (8%)
Query: 63 NPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
+PN F++ + QN+R+ K++DEM P + Y ++S L L
Sbjct: 160 HPNVFTYNLLVRALCQNNRVGAARKMLDEMARKGCP-----PDDVTYATIVS-VLCKLDR 213
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLE--RRCQSQSVADILLEMKSIGYHPDCGT 173
L A +L +P + ++ L R + Q V ++ +M G P+ T
Sbjct: 214 LDEATEVL--------AAMPPVAASYNAIVLALCREFRMQEVFSVVSDMVGRGLQPNVIT 265
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+V + C +L A +L M C P++ +++ ++ + + +DA++M + MV
Sbjct: 266 YTTIVDAFCKAGELRMACAILARMVITGCTPNVVTFTALVRGLFDDGRVHDALDMWRWMV 325
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
G P + L + ++ A ++ +E+ GC + Y +++G + +
Sbjct: 326 AE-GWAPSTVSYNILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDL 384
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVE 320
A M+ G P + V +V+
Sbjct: 385 GGAISIWNDMSRSGCKPNVVVYTNMVD 411
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC--QSQSVAD-ILLEMKSIGYHPDCGTCN 175
A++I RSGC P + + + ++ Q++S+ D +LLE P+ T N
Sbjct: 387 AISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLE----NCPPNTVTFN 442
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ SLC ++ A V M CVP+ +Y+ +I + DA+ M+ EM
Sbjct: 443 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM 499
>gi|224096624|ref|XP_002310676.1| predicted protein [Populus trichocarpa]
gi|222853579|gb|EEE91126.1| predicted protein [Populus trichocarpa]
Length = 424
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/148 (26%), Positives = 67/148 (45%), Gaps = 1/148 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + G PD + L+ C L E + + M PDL Y+I+I M +R
Sbjct: 240 KMCACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSR 299
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K DA E++ +++ GL P + L + +A+ + +E GC G Y
Sbjct: 300 KVKDAKEVLSRLIVE-GLKPDVHTYTALVDGLCREGSIIEALRLFRKMEEDGCMPGSCSY 358
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGF 308
V+++GCL+ + + + M +RGF
Sbjct: 359 NVLLQGCLQHNDTSTVVQLIHEMADRGF 386
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 8/131 (6%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHP 169
LH + ++ +TL+ G P +++ + ++ C +++ A +L EM +G P
Sbjct: 88 LHHVDYGFSVFGKTLKRGFKP----DVVIFTTLIDGVCRIGKTELAAGLLKEMGLVGCVP 143
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D TCN L+ C+ ++ + K+ M S PD+ SYSI I K ++A+E+
Sbjct: 144 DVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSYSIFINGYCKVEKIDEAMELF 203
Query: 230 KEMVLNMGLMP 240
EM + G++P
Sbjct: 204 DEMS-HRGVVP 213
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/208 (20%), Positives = 87/208 (41%), Gaps = 8/208 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTC 174
LA +L+ GCVP ++ ++ + C V I M S G PD +
Sbjct: 128 LAAGLLKEMGLVGCVP----DVVTCNSLMRGYCSQGKIDKVRKIFHLMVSKGLKPDVYSY 183
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+ ++ C ++++ EA ++ MS VP+ +Y+ +I A+ A + DA + ++M
Sbjct: 184 SIFINGYCKVEKIDEAMELFDEMSHRGVVPNAVTYNTLIKALCQALRPRDAQVLFRKMC- 242
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
GL P + + + + + + ++R+ Y +++ G R+
Sbjct: 243 ACGLSPDILAYSTLLDGFCKQGNLDEMLVLFQEMQRRLVKPDLVVYTIIINGMCRSRKVK 302
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + + + G P + +V+GL
Sbjct: 303 DAKEVLSRLIVEGLKPDVHTYTALVDGL 330
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 47/97 (48%), Gaps = 3/97 (3%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L++ + + C+S+ V D +L + G PD T LV LC ++EA ++ +
Sbjct: 285 LVVYTIIINGMCRSRKVKDAKEVLSRLIVEGLKPDVHTYTALVDGLCREGSIIEALRLFR 344
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
M C+P SY++++ T+ V+++ EM
Sbjct: 345 KMEEDGCMPGSCSYNVLLQGCLQHNDTSTVVQLIHEM 381
>gi|125555457|gb|EAZ01063.1| hypothetical protein OsI_23091 [Oryza sativa Indica Group]
Length = 552
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+ PD +YS V+ A++ A + +DAV ++ EMV + G++ + + A LRA ++
Sbjct: 114 DLAPDKFTYSTVVSALADAGRVDDAVALVHEMVAD-GVVAAEAFNPVLRAMLRAG-DVKG 171
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A ++ EF++ KGC Y V+V G L C A + M G +P + VV+
Sbjct: 172 AAKLFEFMQLKGCVPTAATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVD 231
Query: 321 GLAGVGE----WKLA 331
GL G WK+A
Sbjct: 232 GLVRCGRVKDAWKVA 246
>gi|224144668|ref|XP_002325369.1| predicted protein [Populus trichocarpa]
gi|222862244|gb|EEE99750.1| predicted protein [Populus trichocarpa]
Length = 422
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/200 (22%), Positives = 87/200 (43%), Gaps = 7/200 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
I LL++ +LE S D++ M G PD T N +V ++C ++ +
Sbjct: 223 IEGLLNAGYLE------SAKDMVRRMMKEGLVPDVNTFNSMVEAICNAGEVDFCVDMYHS 276
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+ PD+ SY I+I A+S + ++A ++ ++ + G P + + +
Sbjct: 277 VCKLGFCPDINSYKILIPAVSKVGRIDEAFRLLHNLIED-GHKPFPSLYAPIIKGMFRRG 335
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ A ++ KG P Y +++ C +++ A ++ MTE G +P +
Sbjct: 336 QFDDAFCFFSEMKVKGHPPNRPVYTMMITMCGRGGKHVEAANYLVEMTEIGLVPISRCFD 395
Query: 317 KVVEGLAGVGEWKLATVVRQ 336
V +GL G+ LA + Q
Sbjct: 396 MVTDGLKNCGKHDLAKRIEQ 415
>gi|359485848|ref|XP_002267947.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 1011
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 57/216 (26%), Positives = 94/216 (43%), Gaps = 39/216 (18%)
Query: 149 RCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ +V D +LLEM G P+ T N ++ LC L EA ++ + M VPD
Sbjct: 225 HCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPD 284
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMV-----IK 247
L +Y I+I +++ +A M+ EM+ ++GL P RQG + IK
Sbjct: 285 LYTYDILINGFCMEKRSREAKLMLLEMI-DVGLKPEPITYNALIDGFMRQGDIEQAFRIK 343
Query: 248 ---VAAALRANREMW--------------KAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
VA + AN +W KA+E+++ + KG Q Y +++EG
Sbjct: 344 DEMVACGIEANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRG 403
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ A + + M +R P + ++ GL G
Sbjct: 404 QNMARAFELLDEMKKRKLAPTVLTYSVIINGLCRCG 439
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 44/72 (61%), Gaps = 1/72 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T ++S+ C + + +A +VL M C P+L +Y+++IG + AR ++A+E+
Sbjct: 213 PDVYTYTNMISAHCKVGNVKDAKRVLLEMGEKGCSPNLVTYNVIIGGLCRARLLDEAIEL 272
Query: 229 MKEMVLNMGLMP 240
+ MV + GL+P
Sbjct: 273 KRSMV-DKGLVP 283
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 84/199 (42%), Gaps = 4/199 (2%)
Query: 136 QIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ L++ + L C++ + +I+ EM G PD T + L+ C + A +
Sbjct: 352 EANLIIWNTLLNGVCKAGKMEKALEIMQEMMEKGVEPDSQTYSLLIEGHCRGQNMARAFE 411
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+L M + P + +YS++I + +++EMV+N GL P + + A
Sbjct: 412 LLDEMKKRKLAPTVLTYSVIINGLCRCGNLQGTNAILREMVMN-GLKPNAVVYTTLMTAH 470
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ ++ ++E + +G Y ++ G + + A +M M ER P
Sbjct: 471 AKEGRVEESRMILERMREQGILPDVFCYNSLIIGFCKAKRMEEARTYLMEMLERRLRPNA 530
Query: 313 KVRQKVVEGLAGVGEWKLA 331
++G + GE ++A
Sbjct: 531 HTYGAFIDGYSKAGEMEIA 549
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 82/195 (42%), Gaps = 2/195 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + I E++ G P+ T N L+S C + +A+++L+ M PD
Sbjct: 610 LSRNGKMHEAFGIFSELQEKGLLPNAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPD 669
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+I+I + A + A + + + GL P + ++ A +++
Sbjct: 670 IVTYNILIDGLCKAGEIERAKNLFDD-IEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLL 728
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + +G P Y V++ C + ++ A M E+GF + ++EG
Sbjct: 729 EEMLLRGVPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVSF-NTLIEGYCKS 787
Query: 326 GEWKLATVVRQRFAE 340
G+ + A + + E
Sbjct: 788 GKLQEANHLLEEMIE 802
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 79/181 (43%), Gaps = 3/181 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ L K+ + P +CN L+ L +++ KV GM + + +PD+ +Y+ +I A
Sbjct: 166 NVFLGPKNFEFRPSLLSCNSLLGDLLKGNKVELFWKVFDGMCAHKVLPDVYTYTNMISAH 225
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
DA ++ EM G P + L R + +A+E+ + KG
Sbjct: 226 CKVGNVKDAKRVLLEMG-EKGCSPNLVTYNVIIGGLCRARLLDEAIELKRSMVDKGLVPD 284
Query: 277 FQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y++++ G C+E R A ++ M + G P +++G G+ + A ++
Sbjct: 285 LYTYDILINGFCMEKRSR-EAKLMLLEMIDVGLKPEPITYNALIDGFMRQGDIEQAFRIK 343
Query: 336 Q 336
Sbjct: 344 D 344
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 11/196 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A I G +P ++ + C+ +V + +L EM G +PD T N
Sbjct: 619 AFGIFSELQEKGLLP----NAFTYNSLISGSCKQGNVDKASQLLEEMCIKGINPDIVTYN 674
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC ++ A + + P+ +Y+ ++ ++ A ++++EM+L
Sbjct: 675 ILIDGLCKAGEIERAKNLFDDIEGRGLTPNCVTYAAMVDGYCKSKNPTAAFQLLEEMLLR 734
Query: 236 MGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+P + V E + KA+++ + + KG + ++EG + +
Sbjct: 735 G--VPPDAFIYNVILNFCCKEEKFEKALDLFQEMLEKGFASTVS-FNTLIEGYCKSGKLQ 791
Query: 295 LAGKTVMGMTERGFIP 310
A + M E+ FIP
Sbjct: 792 EANHLLEEMIEKQFIP 807
>gi|302816300|ref|XP_002989829.1| hypothetical protein SELMODRAFT_42426 [Selaginella moellendorffii]
gi|300142395|gb|EFJ09096.1| hypothetical protein SELMODRAFT_42426 [Selaginella moellendorffii]
Length = 331
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 63/115 (54%), Gaps = 7/115 (6%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLV 178
+L++ + SGCVP L +A +E C+ + V + ++ EM S G PD T +L+
Sbjct: 180 LLRQMVESGCVP----ELATFNAVIEGLCKVRRVENARWVMNEMASQGCSPDAATHRFLL 235
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+LC +D+L EA + ++ M + C+PD +YS +I + + +A KEM+
Sbjct: 236 EALCKMDKLDEAHRHVQRMIATGCLPDTVTYSFLIKKLCKEGRPMEAHRFFKEMI 290
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 5/169 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL +M+ +G+H D G N ++ L ++ +A M DLESYSIV+ A+
Sbjct: 42 ILAQMEKMGFHIDVGLHNAIIRGLIRAKRVDDALDHFAKMEKNR-DTDLESYSIVVSALC 100
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + AV+++ M +P G+ ++ A+ + ++ A + E + G
Sbjct: 101 DEKRVDKAVDLLYSMN-EESFLPDVGIYNRIIEAM-SELQLHGAYLLFEQMIEAGVLPNS 158
Query: 278 QGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGV 325
+ +V GC + R ++ G ++ M E G +P + V+EGL V
Sbjct: 159 ATFSFLVRGCFK-RGFLDEGSELLRQMVESGCVPELATFNAVIEGLCKV 206
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 26/122 (21%), Positives = 57/122 (46%), Gaps = 2/122 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + ++ + +G +P L +R + +++L +M G P+ T N ++
Sbjct: 142 AYLLFEQMIEAGVLPNSATFSFLVRGCFKRGFLDEG-SELLRQMVESGCVPELATFNAVI 200
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ A V+ M+S C PD ++ ++ A+ K ++A ++ M+ G
Sbjct: 201 EGLCKVRRVENARWVMNEMASQGCSPDAATHRFLLEALCKMDKLDEAHRHVQRMIAT-GC 259
Query: 239 MP 240
+P
Sbjct: 260 LP 261
>gi|291622148|emb|CBJ23784.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 95/215 (44%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LPLALA+L + ++ G P ++ S+ L C S+ +++ ++ +M GY P+
Sbjct: 132 LPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ L ++ EA ++ M + C PDL +Y +V+ + T+ A ++ +M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFILLNKM 247
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L P + + L N+ M A+ + + +E KG Y ++
Sbjct: 248 EQGK-LEPGVLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M ER P + +++ G+
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 90/196 (45%), Gaps = 4/196 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + ++ C+++ + D L EM++ G P+ T + L+S LC + +A+++L
Sbjct: 256 VLIYTTIIDGLCKNKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + PD+ ++S +I A K +A ++ EMV + P + +
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSIDPSIVTYSSLINGFCMH 374
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ +A +M EF+ K C Y +++G + + + M++RG +
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAKRVDEGMELFREMSQRGLVGNTVTY 434
Query: 316 QKVVEGLAGVGEWKLA 331
+++GL G+ +A
Sbjct: 435 TTLIQGLFQAGDCDMA 450
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P T + L++ C D+L EA ++ + M S C PD+ SYS +I A+
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVSYSTLIKGFCKAK 410
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++ +E+ +EM GL+ + L + A E+ + + G P Y
Sbjct: 411 RVDEGMELFREMS-QRGLVGNTVTYTTLIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTY 469
Query: 281 EVVVEG 286
+++G
Sbjct: 470 NTLLDG 475
>gi|413950073|gb|AFW82722.1| hypothetical protein ZEAMMB73_503137 [Zea mays]
Length = 620
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A AIL R + +GC P V L+ + + R D+ M + G+ P +
Sbjct: 252 LRMACAILARMVITGCTPNVVTFTALVRGLFDDGR--VHDALDMWRWMVAEGWAPSTVSY 309
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ LC++ L A+ +L M C P++ +YS +I S A A+ + +M
Sbjct: 310 NILIRGLCSVGDLKGASSILNSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSR 369
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ G P + + +A +I+ + + CP + ++ +CR
Sbjct: 370 S-GCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLENCPPNTVTFNTLIRSLCDCRRVG 428
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A M G +P + +++ GL
Sbjct: 429 RALGVFHEMRRHGCVPNGRTYNELIHGL 456
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 58/237 (24%), Positives = 92/237 (38%), Gaps = 16/237 (6%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---D 157
A D L +++H L A R R+ + P R W CQ+ V
Sbjct: 105 APDRALKTFYRAVHDLGCA-----RPHRAAALQPPHRRAAAGRTWA--LCQNNRVGAARK 157
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G PD T +VS LC +D+L EA +VL M P SY+ ++ A+
Sbjct: 158 MLDEMARKGCPPDDVTYATIVSVLCKLDRLDEATEVLAAMP-----PVAASYNAIVLALC 212
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + ++ +MV GL P + A E+ A ++ + GC
Sbjct: 213 REFRMQEVFSVVSDMV-GRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPNV 271
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ +V G + A M G+ P ++ GL VG+ K A+ +
Sbjct: 272 VTFTALVRGLFDDGRVHDALDMWRWMVAEGWAPSTVSYNILIRGLCSVGDLKGASSI 328
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/175 (20%), Positives = 76/175 (43%), Gaps = 1/175 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q V ++ +M G P+ T +V + C +L A +L M C P+
Sbjct: 211 LCREFRMQEVFSVVSDMVGRGLQPNVITYTTIVDAFCKAGELRMACAILARMVITGCTPN 270
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +++ ++ + + +DA++M + MV G P + L + ++ A ++
Sbjct: 271 VVTFTALVRGLFDDGRVHDALDMWRWMVAE-GWAPSTVSYNILIRGLCSVGDLKGASSIL 329
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
+E+ GC + Y +++G + + A M+ G P + V +V+
Sbjct: 330 NSMEQHGCFPNVRTYSTLIDGFSKAGDLGGAISIWNDMSRSGCKPNVVVYTNMVD 384
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC--QSQSVAD-ILLEMKSIGYHPDCGTCN 175
A++I RSGC P + + + ++ Q++S+ D +LLE P+ T N
Sbjct: 360 AISIWNDMSRSGCKPNVVVYTNMVDVFCKKLMFNQAKSLIDKMLLE----NCPPNTVTFN 415
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ SLC ++ A V M CVP+ +Y+ +I + DA+ M+ EM
Sbjct: 416 TLIRSLCDCRRVGRALGVFHEMRRHGCVPNGRTYNELIHGLFREGNCGDALHMVTEM 472
>gi|255556466|ref|XP_002519267.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541582|gb|EEF43131.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 665
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 66/256 (25%), Positives = 106/256 (41%), Gaps = 46/256 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + R GC P +I L A L + Q + I MK G P+ T N L+
Sbjct: 133 ALKMFYRIREFGCQPTVKIYNHLLDAMLSEN-RFQMIEPIYSNMKRDGKEPNVYTYNILL 191
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM---------- 228
+LC +++ A K+L MS+ C PD+ SY+ VI +MS K +A E+
Sbjct: 192 KALCKNNRVDGACKLLVEMSNKGCEPDVVSYTTVISSMSKLGKVEEARELSIRFQPNVSV 251
Query: 229 -------------MKEMVLNMGLMPRQGM---VIKVAAALRA-----NREMWKAVEMIEF 267
+KE+ L +G M +G+ VI + + + N E+ AV F
Sbjct: 252 YNALINGFCREYKVKEVFLLLGQMVEKGIDPNVITYSTVISSLSGIGNVELALAVWAKMF 311
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEG 321
+ +GC + +++G Y + G+ + M E GF P + ++ G
Sbjct: 312 V--RGCSPNVYTFTSLMKG------YFMRGRVLEALNIWNRMAEEGFEPNVVAYNTLIHG 363
Query: 322 LAGVGEWKLATVVRQR 337
L G+ A V +
Sbjct: 364 LCSHGKMGEAVSVSSK 379
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 92/224 (41%), Gaps = 5/224 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADI 158
I Y ++S +L + + LALA+ + GC P V L+ ++ R +I
Sbjct: 285 ITYSTVIS-SLSGIGNVELALAVWAKMFVRGCSPNVYTFTSLMKGYFMRGRVLE--ALNI 341
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
M G+ P+ N L+ LC+ ++ EA V M C P++ +Y +I +
Sbjct: 342 WNRMAEEGFEPNVVAYNTLIHGLCSHGKMGEAVSVSSKMERNGCSPNVSTYGALIDGFAK 401
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A A E+ +M+ N G +P + + L + +A +IE + CP
Sbjct: 402 AGDLVGASEIWNKMMTN-GCIPNVVVYTSMVNVLCRSSMFSQAWSLIEKMSTDNCPPNTV 460
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++G A M + G P IK +V++GL
Sbjct: 461 TFNTFIKGLCCSGRVECAINLFCQMEQYGCSPNIKTYNEVLDGL 504
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 81/193 (41%), Gaps = 26/193 (13%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
++ + ++ G P N+L+ ++ + ++ + M P++ +Y+I
Sbjct: 130 AEQALKMFYRIREFGCQPTVKIYNHLLDAMLSENRFQMIEPIYSNMKRDGKEPNVYTYNI 189
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
++ A+ + + A +++ EM N G P V+ + + ++ K E E
Sbjct: 190 LLKALCKNNRVDGACKLLVEMS-NKGCEPD---VVSYTTVISSMSKLGKVEEAREL---- 241
Query: 272 GCPIGFQG----YEVVVEGCLECREY------ILAGKTVMGMTERGFIPYIKVRQKVVEG 321
I FQ Y ++ G CREY +L G+ M E+G P + V+
Sbjct: 242 --SIRFQPNVSVYNALINGF--CREYKVKEVFLLLGQ----MVEKGIDPNVITYSTVISS 293
Query: 322 LAGVGEWKLATVV 334
L+G+G +LA V
Sbjct: 294 LSGIGNVELALAV 306
>gi|12320851|gb|AAG50561.1|AC073506_3 hypothetical protein [Arabidopsis thaliana]
Length = 802
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/212 (24%), Positives = 96/212 (45%), Gaps = 10/212 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL +L R+G P LL+ + ++ R + + L M+ +G P+ T N
Sbjct: 261 ALKVLTLMQRAGVEP----NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 316
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C + ++ EA ++L+ M S C+PD SY ++G + ++ + ++MK+M
Sbjct: 317 CMIRGYCDLHRVEEAIELLEDMHSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 376
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P Q + L + +A+ ++ + KG I GY +V C+E +
Sbjct: 377 HGLVPDQVTYNTLIHMLTKHDHADEALWFLKDAQEKGFRIDKLGYSAIVHAL--CKEGRM 434
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + + E P + VV G +GE
Sbjct: 435 SEAKDL-INEMDCPPDVVTYTAVVNGFCRLGE 465
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 28/129 (21%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M + G+ P+ + L++ +C + +EA +++ P+ +YS+++ +
Sbjct: 472 LLQVMHTHGHKPNTVSYTALLNGMCRTGKSLEAREMMNMSEEHWWSPNSITYSVIMHGLR 531
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K ++A ++++EMVL G P + + +L + +A + +E KGC I
Sbjct: 532 REGKLSEACDVVREMVLK-GFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINV 590
Query: 278 QGYEVVVEG 286
+ V+ G
Sbjct: 591 VNFTTVIHG 599
>gi|242084014|ref|XP_002442432.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
gi|241943125|gb|EES16270.1| hypothetical protein SORBIDRAFT_08g020000 [Sorghum bicolor]
Length = 535
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 77/168 (45%), Gaps = 1/168 (0%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
Y P N L+ + ++ L K K M C P++++YS ++ A R+ DA+
Sbjct: 310 YGPTTMAYNALIFNFISVGDLDSCIKYYKDMLEKNCPPNIDTYSKMVKAFLKGRRVADAL 369
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+M +M++ G++P GM+ L A+ + + + GC I + Y++++E
Sbjct: 370 QMFDDMLVQ-GVLPNTGMITSFINPLCTFGPPHAALMIYKKSRKAGCVISLKAYKLLLER 428
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + + M E G+ P ++ + +V GL VG+ A V
Sbjct: 429 LAKFGKSGIVLDIWEEMQECGYQPDKEIYEFIVNGLCNVGKVDAAVSV 476
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 110 LQSLHPLPLALAILQRTLRSGCV-PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L + P AL I +++ ++GCV + +LLL L + +S V DI EM+ GY
Sbjct: 394 LCTFGPPHAALMIYKKSRKAGCVISLKAYKLLLER--LAKFGKSGIVLDIWEEMQECGYQ 451
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLK 195
PD ++V+ LC + ++ A V++
Sbjct: 452 PDKEIYEFIVNGLCNVGKVDAAVSVVE 478
>gi|357125354|ref|XP_003564359.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 665
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/216 (23%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL++L LR C P ++ + LE C+S +L EM++ G P+ T N
Sbjct: 156 ALSLLDDMLRRECQP----SVVTYTVLLEAVCKSSGFGQAMKVLDEMRAKGCTPNIVTYN 211
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ +C D++ +A ++L +SS PD SY+ V+ + A++ D + EMV N
Sbjct: 212 VIINGMCREDRVDDARQILNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEVLFCEMVEN 271
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+P + + + +A+E+++ + GC +V+ +
Sbjct: 272 -NCVPNEVTFDMLVRFFCRGGMVERAIEVLDRMSEHGCTANTTLCNIVINSICKQGRVDD 330
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P V++GL G W+ A
Sbjct: 331 AFEFLNNMGSYGCSPDTISYTTVLKGLCRAGRWEDA 366
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 2/136 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G + CN +++S+C ++ +A + L M S C PD SY+ V+ +
Sbjct: 298 EVLDRMSEHGCTANTTLCNIVINSICKQGRVDDAFEFLNNMGSYGCSPDTISYTTVLKGL 357
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + DA E++ EMV P + L + +A+ +IE + GC +G
Sbjct: 358 CRAGRWEDAKELLNEMV-RKNCPPNEVTFNTFICILCQKGLIDQAILLIEQMPEYGCSVG 416
Query: 277 FQGYEVVVEG-CLECR 291
Y +V G C++ R
Sbjct: 417 IVTYNALVNGFCVQGR 432
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 93/207 (44%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P P + I Y LL+ L L A +L +++ C P+ +
Sbjct: 433 VDSALELFNSLPCEPNT---ITYTTLLT-GLCHAERLDAAAELLAEMMQNDC-PLNVVTF 487
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ ++ + +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 488 NVLVSFFCQKGFVEEAIELVQQMMEHGCTPNLITFNTLLDGITEDCNSEEALELLHGLVS 547
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D +YS ++ +S + +AV+M V +MG+ P+ M K+ +AL E
Sbjct: 548 KGISLDTITYSSIVDVLSREDRIEEAVQMF-HAVQDMGMRPKAVMYNKILSALCKRCETD 606
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
+A++ + C Y +++EG
Sbjct: 607 RAIDFFAHMVSNSCMPNESTYVILIEG 633
>gi|255581238|ref|XP_002531431.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528950|gb|EEF30943.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 737
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 77/171 (45%), Gaps = 2/171 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ +G P+ T N L+ C + Q+ A +++ M C PD SY V+G +
Sbjct: 228 FLERMQLVGITPNVVTYNCLIKGYCDLYQVEHAMELIAEMPFKGCPPDKVSYYTVMGFLC 287
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + +M++MV + L P Q + L + +A+E + E +G +
Sbjct: 288 QDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHADEALEFLRETEERGFQVDK 347
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
GY +V C++ R A + V M +G P + VV GL VG+
Sbjct: 348 VGYSAIVNSFCMQGR-MDRAKEIVNEMITKGCSPDVVTYTAVVNGLCKVGK 397
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 74/167 (44%), Gaps = 8/167 (4%)
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRT 126
++ + Q+ RIK + ++E + ++ Y+ L+ + H AL L+ T
Sbjct: 280 YTVMGFLCQDKRIKEVRNLMEKMVKDNKLFPDQVTYNTLVHMLSKHGHA-DEALEFLRET 338
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
G Q+ + SA + C +I+ EM + G PD T +V+ LC
Sbjct: 339 EERGF----QVDKVGYSAIVNSFCMQGRMDRAKEIVNEMITKGCSPDVVTYTAVVNGLCK 394
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ ++ EA K+L+ M C P+ SY+ ++ + + +A EMM
Sbjct: 395 VGKVEEAKKMLQQMYKHGCKPNTVSYTALLNGLCQHGNSLEAREMMN 441
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 45/234 (19%), Positives = 95/234 (40%), Gaps = 7/234 (2%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
H +++I EM P + K++Y ++ + Q + ++++ ++ + Q
Sbjct: 259 HAMELIAEM-----PFKGCPPDKVSYYTVMGFLCQD-KRIKEVRNLMEKMVKDNKLFPDQ 312
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ L + + + L E + G+ D + +V+S C ++ A +++
Sbjct: 313 VTYNTLVHMLSKHGHADEALEFLRETEERGFQVDKVGYSAIVNSFCMQGRMDRAKEIVNE 372
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + C PD+ +Y+ V+ + K +A +M+++M + G P + L +
Sbjct: 373 MITKGCSPDVVTYTAVVNGLCKVGKVEEAKKMLQQMYKH-GCKPNTVSYTALLNGLCQHG 431
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A EM+ E Y VV+ G + A V M +GF P
Sbjct: 432 NSLEAREMMNTSEEDWWTPNAITYSVVMHGLRREGKLSEACDVVREMLTKGFFP 485
>gi|357465315|ref|XP_003602939.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355491987|gb|AES73190.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 586
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 7/212 (3%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
VP P +L + + R ++ +++ MK+ G P+ + LV LC +L +A
Sbjct: 342 VPDPLTYNVLINGFC-REGKADRARNVIEFMKNNGCCPNVFNYSALVDGLCKAGKLQDAK 400
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
VL M S+ PD +Y+ +I S + ++A+E++ EM N + +
Sbjct: 401 GVLAEMKSSGLKPDAITYTSLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGL 460
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
R R +A++MIE L ++G + Y +V+ + E A K + M RGF+P+
Sbjct: 461 CREGR-FDEALDMIEKLPQQGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPH 519
Query: 312 IKVRQKVV-----EGLAGVGEWKLATVVRQRF 338
+++ EG+A L +V F
Sbjct: 520 YATSNELLVRLCKEGMANDAATALFDLVDMGF 551
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 92/196 (46%), Gaps = 10/196 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +++ +GC P + SA ++ C++ + D +L EMKS G PD T
Sbjct: 364 ARNVIEFMKNNGCCP----NVFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKPDAITYT 419
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ Q+ EA ++L M +C D ++++++G + + ++A++M+ E +
Sbjct: 420 SLINFFSRNGQIDEAIELLTEMKENDCQADTVTFNVILGGLCREGRFDEALDMI-EKLPQ 478
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYI 294
G+ +G V +L N E+ KA +++ + +G P E++V C E
Sbjct: 479 QGVYLNKGSYRIVLNSLTQNCELRKANKLLGLMLSRGFVPHYATSNELLVRLCKEGMAND 538
Query: 295 LAGKTVMGMTERGFIP 310
A + + + GF P
Sbjct: 539 -AATALFDLVDMGFQP 553
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 66/154 (42%), Gaps = 1/154 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAM 216
+L +S+ Y P+ N LV C + A +V+K M +S P++ +YS ++ +
Sbjct: 260 LLYAKRSLVYKPNVCIFNILVKYHCRRGDIDSAFEVVKEMRNSKYSYPNVITYSTLMDGL 319
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +A E+ +EMV ++P + + +A +IEF++ GC
Sbjct: 320 CRNGRLKEAFELFEEMVSKDQIVPDPLTYNVLINGFCREGKADRARNVIEFMKNNGCCPN 379
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y +V+G + + A + M G P
Sbjct: 380 VFNYSALVDGLCKAGKLQDAKGVLAEMKSSGLKP 413
>gi|302755296|ref|XP_002961072.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
gi|300172011|gb|EFJ38611.1| hypothetical protein SELMODRAFT_75621 [Selaginella moellendorffii]
Length = 628
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 89/199 (44%), Gaps = 16/199 (8%)
Query: 144 AWLERRCQSQSV----ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ E RCQS D EM G PD T N +S LC +L + ++L+ M
Sbjct: 159 GFCEARCQSSRYECRDGD---EMIESGRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDR 215
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREM 258
PD+ ++ +I + A + +DA ++ K M L G +P I + RANR +
Sbjct: 216 GGIPPDVVTFCSIISGLCKANRIDDAFQVFKGM-LERGCVPDSLTYSIMLDNLSRANR-L 273
Query: 259 WKAVEMIEFLE--RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
E++E ++ + GC + + + ++ LA ++GM E G +P +
Sbjct: 274 DTVDEVLEHMQAMKAGCVMEVYTHNAFIGALCRSGKFPLAKNILLGMIESGSLPNLLSYN 333
Query: 317 KVVEGLAGVGE----WKLA 331
V++GL G WKL+
Sbjct: 334 FVIDGLCKSGNVDDAWKLS 352
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 39/72 (54%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M + GY T L+ LC L A +L+ M+ A C P++ +Y+ +I + AR+
Sbjct: 1 MAANGYDASVVTYTTLIDGLCKSGDLDAAQALLQKMADAGCAPNVVTYTALIDGLCKARR 60
Query: 222 TNDAVEMMKEMV 233
+DA++ +K M+
Sbjct: 61 PHDAIQTVKRML 72
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 86/201 (42%), Gaps = 18/201 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ ++R LRSGC P L+ ++ + C + + D +L E+ G+ P+ T +
Sbjct: 64 AIQTVKRMLRSGCEP----DLVTYNSLIHGLCMANRMDDAGLVLQELVRNGFAPNHITYS 119
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR------KTNDAVEMM 229
LV C +L +A +++ M V +L Y I AR + D EM+
Sbjct: 120 TLVIWNCRRRRLDQARGLIREMILRGSVCNLVVYIDCIFGFCEARCQSSRYECRDGDEMI 179
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ G +P + L ++ K +EM+E ++R G P + ++ G +
Sbjct: 180 ES-----GRIPDVVTYNTFISGLCKAGKLDKGLEMLEEMDRGGIPPDVVTFCSIISGLCK 234
Query: 290 CREYILAGKTVMGMTERGFIP 310
A + GM ERG +P
Sbjct: 235 ANRIDDAFQVFKGMLERGCVP 255
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 3/172 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G P+ T L+ LC + +A + +K M + C PDL +Y+ +I +
Sbjct: 32 LLQKMADAGCAPNVVTYTALIDGLCKARRPHDAIQTVKRMLRSGCEPDLVTYNSLIHGLC 91
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + +DA +++E+V N G P + R + +A +I + +G
Sbjct: 92 MANRMDDAGLVLQELVRN-GFAPNHITYSTLVIWNCRRRRLDQARGLIREMILRGSVCNL 150
Query: 278 QGYEVVVEGCLE--CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y + G E C+ + M E G IP + + GL G+
Sbjct: 151 VVYIDCIFGFCEARCQSSRYECRDGDEMIESGRIPDVVTYNTFISGLCKAGK 202
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 59/300 (19%), Positives = 118/300 (39%), Gaps = 13/300 (4%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYT 109
E+L + P+ +F S + ID+ + F + R + Y +L
Sbjct: 208 EMLEEMDRGGIPPDVVTFCSIISGLCKANRIDDAFQVFKGMLERGCVPDSLTYSIMLD-N 266
Query: 110 LQSLHPLPLALAILQ--RTLRSGCVPVPQIRLLLSSAWLERRCQSQS---VADILLEMKS 164
L + L +L+ + +++GCV + + +A++ C+S +ILL M
Sbjct: 267 LSRANRLDTVDEVLEHMQAMKAGCV----MEVYTHNAFIGALCRSGKFPLAKNILLGMIE 322
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTN 223
G P+ + N+++ LC + +A K+ + M S C PD+ ++ +I A + +
Sbjct: 323 SGSLPNLLSYNFVIDGLCKSGNVDDAWKLSRKMLDSGCCKPDVIFFNTLISGFCKAGRLS 382
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
A +++ EM +P + + +A +++ ++ GC Y +
Sbjct: 383 QAHQLLIEMKAKNICVPDVVTYNTLIDGQSKFGSLKQAKLLLQEMQAVGCKPNVVTYAAL 442
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ G + Y A M+ +G P I V+ + G A V Q+ S
Sbjct: 443 INGYAKHGMYEEAESLFDEMSAKGCFPDIITYNTVLSAFSKAGMMSKAEGVYQQLKNKTS 502
>gi|299471515|emb|CBN80001.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 687
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 84/178 (47%), Gaps = 7/178 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM + G P+ + N + + Q +A K+L+GMS+ PD+ S++ I A
Sbjct: 378 ELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGSDPDIISFNSAIDAC 437
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEMIEFLERKGC 273
++ AVE+++EM GL P VI +A+ A W+ A+ + + +G
Sbjct: 438 GRGQQWETAVELLREMP-TAGLTPN---VITYNSAIEACGRSARWQEAMGLFREMPTRGL 493
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++ C + ++ LA + + GM RG P + +E +W+LA
Sbjct: 494 SPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVISYNSAIEACGKGEQWELA 551
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L E K G D + N +++ Q A ++L+ M + PD+ +Y+ I A S
Sbjct: 98 LDEFKISGGSLDTTSYNIAIAACSNGRQWATAVRLLREMPTEGVTPDVVTYNSAIAACSK 157
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKV-----AAALRANREMWK-AVEMIEFLERKG 272
+ +A++++ +MV P +G+ V A A +N WK A++++E + +G
Sbjct: 158 GGRWKEAMDLLTQMV-----APTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQG 212
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
P Y + C + R + A + + E+GF P + V++ A G W
Sbjct: 213 VPPNLITYNSAIGACAKGRRWEEAMDLLEEVIEQGFPPSTRTYNPVIDACAKGGRW 268
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 79/181 (43%), Gaps = 13/181 (7%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L +M++ G P+ + N + + D+ EA +L+ M++ VP + SY+ A
Sbjct: 308 DLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMTTVGLVPTVISYNSATAAC 367
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALR--ANREMW-KAVEMIEFLER 270
+ + +A+E++KE MP QG+ I +AL A W KAV+++ +
Sbjct: 368 AVNGRWVEALELLKE-------MPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMST 420
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
G + ++ C +++ A + + M G P + +E W+
Sbjct: 421 VGSDPDIISFNSAIDACGRGQQWETAVELLREMPTAGLTPNVITYNSAIEACGRSARWQE 480
Query: 331 A 331
A
Sbjct: 481 A 481
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 3/177 (1%)
Query: 157 DILLEM--KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
D+L +M + G PD T N +++ + EA +L+ M + P+L +Y+ IG
Sbjct: 166 DLLTQMVAPTEGITPDVVTYNSAIAACSNGGRWKEAMDLLEQMVAQGVPPNLITYNSAIG 225
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
A + R+ +A+++++E V+ G P V A +A++++ + P
Sbjct: 226 ACAKGRRWEEAMDLLEE-VIEQGFPPSTRTYNPVIDACAKGGRWLEAMDLLGQMLTNDIP 284
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V+ C R + A + M +G P + ++ A WK A
Sbjct: 285 ADVISYSSVIAACGRGRRWKEAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEA 341
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 79/188 (42%), Gaps = 9/188 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + Q + EM + G P+ T N ++ + +Q A ++L GM + PD+
Sbjct: 474 RSARWQEAMGLFREMPTRGLSPNVVTYNSMIDACAKGEQWELAVQLLTGMPARGVAPDVI 533
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV---IKVAAALRANREMWK-AVE 263
SY+ I A + A++++K M P+ ++ V A ++ R W+ A+
Sbjct: 534 SYNSAIEACGKGEQWELALQLLKGMPTR---GPKPDIISYNSAVTACAKSGR--WREALG 588
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+++ + G Y + C + ++ +A + + M G P + ++ A
Sbjct: 589 LLKDMATVGLTPNTVSYGAAIHACGKGEQWDVAVRILKEMQTHGATPNLITYSAAIDACA 648
Query: 324 GVGEWKLA 331
G WK A
Sbjct: 649 KQGRWKEA 656
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 32/143 (22%), Positives = 66/143 (46%), Gaps = 1/143 (0%)
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L+ M + P++ SY+ I A + + +A+++++EM +GL+P
Sbjct: 305 EAMDLLEQMRTQGVSPNVISYNSAIDACAKGDRWKEALDLLREMT-TVGLVPTVISYNSA 363
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
AA N +A+E+++ + +G Y ++ C + ++ A K + GM+ G
Sbjct: 364 TAACAVNGRWVEALELLKEMPAQGIAPNTISYNSALDACAKGGQWEKAVKLLRGMSTVGS 423
Query: 309 IPYIKVRQKVVEGLAGVGEWKLA 331
P I ++ +W+ A
Sbjct: 424 DPDIISFNSAIDACGRGQQWETA 446
>gi|357475985|ref|XP_003608278.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359684|gb|ABD32353.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355509333|gb|AES90475.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 870
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/253 (27%), Positives = 104/253 (41%), Gaps = 58/253 (22%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A AIL +R GC P LL+S W E R ++L +M Y D TCN +
Sbjct: 417 AKAILNEMIRKGCHPNTYTCNTLLNSLWKEGR--KSEAEEMLQKMNEKSYQLDTVTCNIV 474
Query: 178 VSSLCAIDQLVEAAKVLKGM----------------------SSAECVPDLESYSIVIGA 215
V+ LC +L +A++V+ M + + VPD+ +Y+ +I
Sbjct: 475 VNGLCRNGELEKASEVVSEMWTDGTNSLGKENPVAGLVNSIHNVSTNVPDVITYTTLING 534
Query: 216 MSTARKTNDA----VEMMKE-----------MVLNMGLMPRQGMVIKVAAALRANREMWK 260
+ K +A +EMM + VLN +QG K+++ALR ++M
Sbjct: 535 LCKVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLN---FCKQG---KISSALRVLKDM-- 586
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVV 319
ER GC Q Y ++ G L + I +M M ERG P I ++
Sbjct: 587 --------ERNGCSKTLQTYNSLILG-LGSKGQIFEMYGLMDEMRERGIHPDICTYNNMI 637
Query: 320 EGLAGVGEWKLAT 332
L G+ K AT
Sbjct: 638 NCLCEGGKTKDAT 650
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 75/152 (49%), Gaps = 5/152 (3%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N LVSS C D EA K+++ M+ +PD+ +++ I A+ A K +A + ++M +
Sbjct: 223 NTLVSSFCKQDMNDEAEKLVERMTEKGLLPDVVTFNSRISALCRAGKVFEASRIFRDMQM 282
Query: 235 NMGLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+ L + V+ L+ M +A ++E +++ G + + Y + G L
Sbjct: 283 DGELGLPKPNVVTFNLMLKGFCQEGMMEEARSLVETMKKGGNFVSLESYNTWLLGLLRNG 342
Query: 292 EYILAGKTVMG-MTERGFIPYIKVRQKVVEGL 322
+ +L G++V+ M E G P I V++GL
Sbjct: 343 K-LLEGRSVLDEMVENGIEPNIYSYNIVMDGL 373
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 71/145 (48%), Gaps = 11/145 (7%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPK-IAYD-YLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
++ ++E + FI + ++ P + YD ++L++ Q + AL +L+ R+GC
Sbjct: 537 KVGKLEEAKKKFIEMMAKNLHPDSVTYDTFVLNFCKQG--KISSALRVLKDMERNGCSKT 594
Query: 135 PQI--RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q L+L L + Q + ++ EM+ G HPD T N +++ LC + +A
Sbjct: 595 LQTYNSLILG---LGSKGQIFEMYGLMDEMRERGIHPDICTYNNMINCLCEGGKTKDATS 651
Query: 193 VLKGMSSAECV-PDLESYSIVIGAM 216
+L M V P++ S+ I+I A
Sbjct: 652 LLHEMLDKGVVSPNVSSFKILIKAF 676
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 36/150 (24%), Positives = 60/150 (40%), Gaps = 6/150 (4%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
+D + L I+ +LS QS H L A + ++LR+ P L
Sbjct: 64 MDNEINHLFQLTTSHHSHISILNILS---QSPHHLDFAFSHF-KSLRTHFPSTPLPLQLY 119
Query: 142 SSAWLERRCQS--QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
Q+ V + +M G +P+ T N L+ SLC + L A ++ MS
Sbjct: 120 HLLLRSSLQQNRPHYVTSLYTDMIQTGVNPETYTFNLLIQSLCESNALDHARELFDKMSE 179
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMM 229
C P+ + I++ A +T A+E +
Sbjct: 180 KGCQPNKFTVGILVRGFCRAGRTKQALEFV 209
Score = 37.7 bits (86), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 68/152 (44%), Gaps = 7/152 (4%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
V+DEM+E+ I P I ++ L H + A ++ + +G P
Sbjct: 350 VLDEMVENGI------EPNIYSYNIVMDGLCRNHMMLDARRLMDLMVSNGVYPDTVTYTT 403
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L + + ++ A IL EM G HP+ TCN L++SL + EA ++L+ M+
Sbjct: 404 LLHGYCSKGKVFEAKA-ILNEMIRKGCHPNTYTCNTLLNSLWKEGRKSEAEEMLQKMNEK 462
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
D + +IV+ + + A E++ EM
Sbjct: 463 SYQLDTVTCNIVVNGLCRNGELEKASEVVSEM 494
>gi|15237575|ref|NP_198933.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75309191|sp|Q9FLL3.1|PP412_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g41170, mitochondrial; Flags: Precursor
gi|9759163|dbj|BAB09719.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|66792708|gb|AAY56456.1| At5g41170 [Arabidopsis thaliana]
gi|332007267|gb|AED94650.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 527
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A++++ + + G P +++ + ++ C++ V + +M++ G PD
Sbjct: 161 AMSMVNQMVEMGIKP----DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV+ LC + +A +L+GM+ + PD+ +++ +I A K DA E+ EM+
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI-R 275
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M + P + + +A +M +E KGC Y ++ G +C++
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDD 335
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A K M+++G +++G VG+ +A V
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIG 166
LH L A+ T P+P I +LL A +++ V ++ ++ +G
Sbjct: 46 NGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKK---FDVVINLCDHLQIMG 102
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
D TCN L++ C Q A+ L M PD+ +++ +I + +A+
Sbjct: 103 VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM 162
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
M+ +MV MG+ P M + +L N + A+ + + +E G Y +V G
Sbjct: 163 SMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ A + GMT+R P + +++ G++
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKF 263
>gi|302769173|ref|XP_002968006.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
gi|300164744|gb|EFJ31353.1| hypothetical protein SELMODRAFT_88008 [Selaginella moellendorffii]
Length = 737
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 94/219 (42%), Gaps = 8/219 (3%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSL 181
R ++ C P ++ + ++ C+S ++D IL +M G P+ T N L++
Sbjct: 226 RDMQRNCAP----SVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 281
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C + + EA + M C PD+ +Y+I+I + D ++++EMV G P
Sbjct: 282 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV-KYGCEPN 340
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ +L + + A + + + R+ C + ++++ + + LA +
Sbjct: 341 FITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 400
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
MT+RG +P I ++ G A + +R E
Sbjct: 401 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTE 439
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 96/220 (43%), Gaps = 10/220 (4%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDC 171
L LA + Q GC+P + +++S A C++ + D +L M G PD
Sbjct: 392 LDLAYELFQLMTDRGCLPDIYTYNIMISGA-----CRANRIDDARQLLERMTEAGCPPDV 446
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N +VS LC Q+ EA +V + + + D+ + S +I + +R+ +DA ++++E
Sbjct: 447 VTYNSIVSGLCKASQVDEAYEVYEVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLRE 506
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
M N I + +A+ ++ K++ + KGC Y +V++ +
Sbjct: 507 MERNGSAPDVVAYTILIHGFCKAD-QLDKSLAFFSEMLDKGCVPTVITYSIVIDKLCKSA 565
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M ERG P V V++GL + A
Sbjct: 566 RVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEA 605
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 83/198 (41%), Gaps = 9/198 (4%)
Query: 137 IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ S ++ C+S+ + D +L EM+ G PD L+ C DQL ++
Sbjct: 479 LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAF 538
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M CVP + +YSIVI + + + D ++K M L G+ P + V L
Sbjct: 539 FSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTM-LERGVTPDAIVYTSVIDGLC 597
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+ +A E+ + +++ GC Y V+V+ + A + M G +P
Sbjct: 598 KSDSYDEAYELYKLMKQTGCAPTVVTYNVLVDKLCKVSRLDEAIHLLEVMESDGCLPDTV 657
Query: 314 VRQKVVEGLAGVGEWKLA 331
V +G WK A
Sbjct: 658 TYNSVFDGF-----WKSA 670
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/184 (22%), Positives = 82/184 (44%), Gaps = 8/184 (4%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
R S P + +L + L +LA L GCVP ++ S +++ C+S
Sbjct: 509 RNGSAPDVVAYTILIHGFCKADQLDKSLAFFSEMLDKGCVPT----VITYSIVIDKLCKS 564
Query: 153 QSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
V D + +K++ G PD ++ LC D EA ++ K M C P + +Y
Sbjct: 565 ARVRDGCMLLKTMLERGVTPDAIVYTSVIDGLCKSDSYDEAYELYKLMKQTGCAPTVVTY 624
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
++++ + + ++A+ ++ E++ + G +P V + E KA + + ++
Sbjct: 625 NVLVDKLCKVSRLDEAIHLL-EVMESDGCLPDTVTYNSVFDGFWKSAEHDKAFRLFQAMK 683
Query: 270 RKGC 273
+GC
Sbjct: 684 SRGC 687
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 67/175 (38%), Gaps = 2/175 (1%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY TCN L+S+ + EA + K C PD +YS +I AR A
Sbjct: 127 GYKHSKFTCNCLLSAFVRKKKAQEAYDLFKNHRCGLCSPDSITYSTLINGFCKARDFQQA 186
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++ EM G++P + + L N + A+ ++R C Y ++V+
Sbjct: 187 YRLLDEME-KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRN-CAPSVITYTILVD 244
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ A + M E G P + ++ G +G A V+ + E
Sbjct: 245 ALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 299
>gi|414872432|tpg|DAA50989.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 604
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 58/264 (21%), Positives = 103/264 (39%), Gaps = 2/264 (0%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPL-RPRSRPKIAYDYLLSYTLQSLHPLPLALAI 122
P+ F++ + IDE F + R RP + + L L A+ +
Sbjct: 265 PDVFTYTELIRGLGKAGRIDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKL 324
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
Q C+P + A E + ++ V MK G P T + L+ C
Sbjct: 325 FQEMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFC 384
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+++ +A +L+ M P +Y +I A+ A++ + A E+ +E+ N G +
Sbjct: 385 KTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSAR 444
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ + +A R + A+ M + + + GC Y ++ G A T+
Sbjct: 445 VYAVMIKHLGKAGR-LDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRR 503
Query: 303 MTERGFIPYIKVRQKVVEGLAGVG 326
M E G IP I ++ GLA G
Sbjct: 504 MQEHGCIPDINSYNIILNGLAKTG 527
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKD-YQQIPELLGSFEEACQNPNPFSF---LSNFPQN 76
+ +LR + S+ T ++A ++K ++P +E+ +P+ F++ + F +
Sbjct: 327 EMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 386
Query: 77 HRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+R++ +++EM E P P AY L+ L LA + Q L+ C
Sbjct: 387 NRMEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDLACELFQE-LKENCG 439
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ L + + ++ EM +G PD N L+S L L EA
Sbjct: 440 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 499
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ M C+PD+ SY+I++ ++ + A+EM+ M
Sbjct: 500 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 539
>gi|302757245|ref|XP_002962046.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
gi|300170705|gb|EFJ37306.1| hypothetical protein SELMODRAFT_76034 [Selaginella moellendorffii]
Length = 465
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 126/269 (46%), Gaps = 13/269 (4%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIP--LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQR 125
+ LS + + +++ E+L+ I LRP + + Y +++ +S AL +L+
Sbjct: 87 TLLSGYCKAGKVEESRELLKEVISRGLRPDA---LMYTKVVASLCKSARLG-EALELLEE 142
Query: 126 TLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCA 183
+R+GC P + L+S E+ + +AD LL+ M + G D T N L+ LC
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLE---MADSLLQKMAASGVKADVVTYNTLMDGLCK 199
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+L EA ++L+ M ++ C PD+ +YS + + + K DA +++++M + P
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLDAHQVLEQM-RDSHHDPNVV 258
Query: 244 MVIKVAAALRANREMWKAVEMIEFL-ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ L + ++ A+EM+E + GC + GY VV+G + A +
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G P + +V GL G+ + A
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEA 347
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
L+ C+S + L M+ + CG + +V LC + + EA V++ M+ A
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
C PD+ +YS ++ + A K +AVE ++EM + G P + L + + +A
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAME-GCKPNAVTYCSLVHGLCSCGRLAEA 382
Query: 262 VEMIEFL-----ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
M+E + CP Y ++ G + A K M +G P
Sbjct: 383 ERMVEEMSSGGGGGHHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYS 442
Query: 317 KVVEGLAGVG 326
+VEGLA G
Sbjct: 443 TIVEGLARSG 452
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 88/183 (48%), Gaps = 3/183 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGA 215
+L M + P+ + N L+ LC +++ EA ++++ M S PD+ +YS ++
Sbjct: 32 LLETMAARDIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDMVTYSTLLSG 91
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
A K ++ E++KE V++ GL P M KV A+L + + +A+E++E + R GC
Sbjct: 92 YCKAGKVEESRELLKE-VISRGLRPDALMYTKVVASLCKSARLGEALELLEEMIRAGCCP 150
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
+ ++ GC + +A + M G + +++GL G + A +
Sbjct: 151 TLITFNTLISGCCREKNLEMADSLLQKMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210
Query: 336 QRF 338
+R
Sbjct: 211 ERM 213
>gi|115474201|ref|NP_001060699.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|33146488|dbj|BAC79597.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|50509161|dbj|BAD30301.1| membrane-associated salt-inducible protein-like [Oryza sativa
Japonica Group]
gi|113612235|dbj|BAF22613.1| Os07g0688100 [Oryza sativa Japonica Group]
gi|215678726|dbj|BAG95163.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222637719|gb|EEE67851.1| hypothetical protein OsJ_25651 [Oryza sativa Japonica Group]
Length = 665
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 4/187 (2%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS V ++L +M G PD CN V LC ++L +A ++++ M+
Sbjct: 234 SRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTM 293
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +Y+ V+ + R+ ++AV + +EMV GL P + L N+++
Sbjct: 294 KGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMV-RRGLKPDVVACGALIFGLCKNQKVD 352
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A E+ + + Y ++ G A KTV M G P + ++
Sbjct: 353 EAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILL 412
Query: 320 EGLAGVG 326
+G
Sbjct: 413 NHYCSIG 419
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G PD T N L++ C+I +A +++ M + PD SY+I++ + A +
Sbjct: 396 MQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQ 455
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A + + + G I + A RA +++ A+ + + + KG Y
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRA-KKVNSALNLFKEMGYKGIQADAVTYG 514
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++ G LA + M +P + V ++ L VG +K A
Sbjct: 515 ILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHA 564
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 128 RSGCVP-VPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
R+GC P V +LL+ C + +++ +M+ G +PD + N L+ LC
Sbjct: 398 RNGCEPDVVTYNILLN-----HYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
QL +A + D+ S +I+I A A+K N A+ + KEM
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEM 501
>gi|218200292|gb|EEC82719.1| hypothetical protein OsI_27404 [Oryza sativa Indica Group]
Length = 665
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 46/187 (24%), Positives = 82/187 (43%), Gaps = 4/187 (2%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS V ++L +M G PD CN V LC ++L +A ++++ M+
Sbjct: 234 SRWITALCQSNRIELVEELLTDMDKFGCFPDFWACNIYVHYLCGHNRLYDALQMVEKMTM 293
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +Y+ V+ + R+ ++AV + +EMV GL P + L N+++
Sbjct: 294 KGTGPDVVTYTTVVSCLCDHRRFSEAVGLWEEMV-RRGLKPDVVACGALIFGLCKNQKVD 352
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A E+ + + Y ++ G A KTV M G P + ++
Sbjct: 353 EAFELASRMLTLDIQLNVSIYNALISGFWRAGSIEKAYKTVSFMQRNGCEPDVVTYNILL 412
Query: 320 EGLAGVG 326
+G
Sbjct: 413 NHYCSIG 419
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G PD T N L++ C+I +A +++ M + PD SY+I++ + A +
Sbjct: 396 MQRNGCEPDVVTYNILLNHYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCKAHQ 455
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A + + + G I + A RA +++ A+ + + + KG Y
Sbjct: 456 LDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRA-KKVNSALNLFKEMGYKGIQADAVTYG 514
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++ G LA + M +P + V ++ L VG +K A
Sbjct: 515 ILINGLFGIGYSNLAEELFDQMLNTKIVPNVNVYNIMLHNLCKVGHFKHA 564
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 51/109 (46%), Gaps = 9/109 (8%)
Query: 128 RSGCVP-VPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
R+GC P V +LL+ C + +++ +M+ G +PD + N L+ LC
Sbjct: 398 RNGCEPDVVTYNILLN-----HYCSIGMTDKAENLIRKMEMSGVNPDRYSYNILLKGLCK 452
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
QL +A + D+ S +I+I A A+K N A+ + KEM
Sbjct: 453 AHQLDKAFAFVSDHMEVGGFCDIVSCNILIDAFCRAKKVNSALNLFKEM 501
>gi|302826367|ref|XP_002994672.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
gi|300137182|gb|EFJ04264.1| hypothetical protein SELMODRAFT_432576 [Selaginella moellendorffii]
Length = 816
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 68/279 (24%), Positives = 121/279 (43%), Gaps = 12/279 (4%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ +S R+ +LE + + + +P + L + L + A +L +
Sbjct: 512 TLISGLCSIARVDDARHLLEDMV--KRQCKPTVVTQNTLIHGLCKAGRIKEAREVLDAMV 569
Query: 128 RSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
SG P V L+ R Q++ ++L +M + G P+ T LVS LC ++
Sbjct: 570 SSGQSPDVVTYNTLVHGHC--RAGQTERARELLSDMVARGLAPNVVTYTALVSGLCKANR 627
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L EA V M S+ C P+L +Y+ +I +A + + +++ EMV G+ P +
Sbjct: 628 LPEACGVFAQMKSSGCAPNLFTYTALILGFCSAGQVDGGLKLFGEMVC-AGISPDHVVYG 686
Query: 247 KVAAALRANREMWKAVEMI----EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+AA L + +A+E++ E L + G + Y V+G LE + +A V
Sbjct: 687 TLAAELCKSGRSARALEILREGRESLRSEA--WGDEVYRFAVDGLLEAGKMEMALGFVRD 744
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
M G +P + +V GL G+ A V + +L
Sbjct: 745 MVRGGQLPAPERCASLVAGLCKSGQGGEARAVLEEIMDL 783
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 119 ALAILQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPD 170
AL + R GC P + I L + +++ CQ + + +L M G+ PD
Sbjct: 447 ALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGKLDEAFRLLKRMTDDGHVPD 506
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+S LC+I ++ +A +L+ M +C P + + + +I + A + +A E++
Sbjct: 507 VVTYSTLISGLCSIARVDDARHLLEDMVKRQCKPTVVTQNTLIHGLCKAGRIKEAREVLD 566
Query: 231 EMV 233
MV
Sbjct: 567 AMV 569
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 10/176 (5%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ C+ Q+ +A ++L+ M EC PD SY V+ + A + +AV + +
Sbjct: 214 TLNVLLEGFCSRGQVDKARELLRAMPDEECAPDEVSYCTVLDGLCKAGRVEEAVRLFGDR 273
Query: 233 VLNMGLMPR------QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
L +G I V L N + +AV+M E + + Y ++++G
Sbjct: 274 ELPSSSSSSSSPPSLRGYNI-VILGLCQNDRIDEAVQMFEKMNERNVSPDSWSYGILIDG 332
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + A + G P ++ GL + A R+ FA++
Sbjct: 333 LAKAGKLNDARNLFQKLLHSGVTPSTVAYTSLIHGLCMANSFDDA---RELFADMN 385
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 46/103 (44%), Gaps = 1/103 (0%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
R GC P P ++ A +R + D++ +M G+ PD T N ++ LC ++
Sbjct: 386 RRGCPPSPVTYNVMIDASC-KRGMLEEACDLIKKMIEDGHVPDVVTYNTVMDGLCKSSRV 444
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
EA + M C P+ S++ +I + K + A + K
Sbjct: 445 EEALLLFNEMERLGCTPNRRSHNTIILGLCQQSKIDQACQRGK 487
>gi|326505926|dbj|BAJ91202.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 669
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 97/216 (44%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
ALA+L L+ GC P ++ + LE C+S ++L EM++ G P+ T N
Sbjct: 160 ALALLDDMLQRGCQP----SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYN 215
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ +C ++ +A ++L +SS PD+ SY+ V+ + AR+ +D + EMV +
Sbjct: 216 VIINGMCREGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-D 274
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+P + + + +A+++++ + + GC +V+ +
Sbjct: 275 KKCVPNEVTFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDD 334
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M G P V+ GL G W+ A
Sbjct: 335 AYDFLNNMGMYGCNPDTISYTTVLRGLCRAGRWEHA 370
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P P + I Y LL+ L L A +L ++ C P+ +
Sbjct: 437 VDSALELFNNLPCEPNT---ITYTTLLT-GLCHAERLDAAAELLAGMIQKDC-PLNAVTF 491
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ ++ + +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 492 NVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 551
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D +YS V+ +S +T +A++M+ V +MG+ P+ GM K+ AL E
Sbjct: 552 KGVSLDTITYSSVVDVLSREDRTEEAIQML-HAVQDMGMRPKVGMYNKILFALCKRCETD 610
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
+A++ ++ GC Y +++EG
Sbjct: 611 QAIDFFAYMVSNGCMPNESTYIILIEG 637
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+R +ER Q +L +M G P+ CN +++++C ++ +A L
Sbjct: 288 VRFFCRGGMVERAIQ------VLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN 341
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C PD SY+ V+ + A + A E++ EMV P + L
Sbjct: 342 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV-RKNCPPNEVTFNTFICILCQKG 400
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ +A+++IE + GC +G Y +V G C++ R
Sbjct: 401 LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 436
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 84/212 (39%), Gaps = 40/212 (18%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG--------------------------- 196
S G PD C L+ +LC + +AA+VL+
Sbjct: 67 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRTAEASGAPVDVFAYNTLVAGYCRYGRLD 126
Query: 197 -----MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++S PD +Y+ +I + + DA+ ++ +M L G P + A
Sbjct: 127 AARRLIASMPVPPDAYTYTPIIRGLCDRGRVGDALALLDDM-LQRGCQPSVVTYTVLLEA 185
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE-YILAGKTVMG-MTERGFI 309
+ + +A+ +++ + KGC Y V++ G CRE + K ++ ++ GF
Sbjct: 186 VCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIING--MCREGRVDDAKEILNRLSSYGFQ 243
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
P I V++GL W V+ FAE+
Sbjct: 244 PDIVSYTTVLKGLCAARRWDDVKVL---FAEM 272
>gi|224130936|ref|XP_002320961.1| predicted protein [Populus trichocarpa]
gi|222861734|gb|EEE99276.1| predicted protein [Populus trichocarpa]
Length = 474
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/191 (25%), Positives = 87/191 (45%), Gaps = 4/191 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L TLR G VP + ++S L R + + + + + G+ P+ T L
Sbjct: 256 AVQLLDETLRKGLVPDIVTFTTIISG--LCRAGRPLAAQQLFRYICAHGHTPNIMTYGVL 313
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ LC L EA + + M + P+L Y+I+I ++ K D E+ ++ + G
Sbjct: 314 LDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGKIKDGKELFSRLI-DEG 372
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L P + AL + +A ++ +E GC Y V+++G L+ ++ +A
Sbjct: 373 LKPNVYTYTALVGALCKEGLIIEAHKLFRKMEEDGCTPDKCAYNVIIQGFLQHKDPSMAR 432
Query: 298 KTVMGMTERGF 308
+ V M RGF
Sbjct: 433 QLVEEMVNRGF 443
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/169 (19%), Positives = 73/169 (43%), Gaps = 1/169 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G P T L++ LC ++ + + M P++ +Y+++I ++S
Sbjct: 119 VLSKILKLGLEPSIVTFTTLLNGLCMEGKMDQVMMLYDDMLVRGLQPNVYTYNVIINSLS 178
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ K N+A+ +K+M +G +P + +M +A + + + KGC
Sbjct: 179 KSGKANEALGFLKQME-KVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDLMVSKGCTPNV 237
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++ G + A + + +G +P I ++ GL G
Sbjct: 238 YTYTSLMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAG 286
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 93/211 (44%), Gaps = 8/211 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNY 176
AL L++ + GCVP V L+ L + +++SV D+ M S G P+ T
Sbjct: 186 ALGFLKQMEKVGCVPNVVNYSTLIDGYCLRGQMDEARSVFDL---MVSKGCTPNVYTYTS 242
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L++ C I+++ EA ++L VPD+ +++ +I + A + A ++ + + +
Sbjct: 243 LMNGYCKIERIEEAVQLLDETLRKGLVPDIVTFTTIISGLCRAGRPLAAQQLFRYICAH- 301
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + L + + +A + + ++R Y ++++ +C + I
Sbjct: 302 GHTPNIMTYGVLLDGLCKHGNLEEAFALFQEMQRSTVKPNLVIYTILIDSLCKCGK-IKD 360
Query: 297 GKTVMG-MTERGFIPYIKVRQKVVEGLAGVG 326
GK + + + G P + +V L G
Sbjct: 361 GKELFSRLIDEGLKPNVYTYTALVGALCKEG 391
>gi|356527777|ref|XP_003532484.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 583
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 91/217 (41%), Gaps = 2/217 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P AL L R G P P + L +L+ + V + L M+ G PD T +
Sbjct: 249 MPEALRFLYRMKELGVDPNPVVFNSLIKGYLDT-TDTNGVDEALTLMEEFGIKPDVVTFS 307
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++++ + + ++ M A PD+ +YSI+ A + A ++ M
Sbjct: 308 TIMNAWSSAGLMENCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAEALLTSMS-K 366
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + + + A +M +A + E + G + YE ++ G E ++
Sbjct: 367 YGVQPNVVIFTTIISGWCAAGKMDRAFRLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWK 426
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
A + + M ERG +P + Q V + +G +K A
Sbjct: 427 AEELLTTMEERGVVPEMSTMQLVADAWRAIGLFKEAN 463
>gi|357521289|ref|XP_003630933.1| Tau class glutathione S-transferase [Medicago truncatula]
gi|355524955|gb|AET05409.1| Tau class glutathione S-transferase [Medicago truncatula]
Length = 1320
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 79/181 (43%), Gaps = 4/181 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ V + +L M+ G PD ++S C + + A K+ M + VPD+
Sbjct: 323 CKNGEVVEAEQLLRGMRKWGVFPDNVVYTTVISGFCKLGNVSAACKLFDEMRRKKIVPDI 382
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ VI + + K +A EM EM++ GL P + + EM +A +
Sbjct: 383 VTYTSVIHGICKSGKMVEAREMFNEMLVK-GLEPDEVTYTALIDGYCKAGEMKEAFSVHN 441
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ +KG Y + +G + E +A + + M+ +G P + +V GL +G
Sbjct: 442 QMVQKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYNTIVNGLCKIG 501
Query: 327 E 327
Sbjct: 502 N 502
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ PD T ++ +C ++VEA ++ M PD +Y+ +I A
Sbjct: 372 EMRRKKIVPDIVTYTSVIHGICKSGKMVEAREMFNEMLVKGLEPDEVTYTALIDGYCKAG 431
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A + +MV GL P +A L N E+ A E++ + RKG Y
Sbjct: 432 EMKEAFSVHNQMV-QKGLTPNVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTY 490
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + K + M GF P +++ +GE
Sbjct: 491 NTIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGE 537
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 73/179 (40%), Gaps = 11/179 (6%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ ++ EM G++PD T L+ + C + ++ +A ++L+ M + P L +++++
Sbjct: 504 EQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIMLNKRLQPTLVTFNVL 563
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + D E + E +L G+MP + M E+ + + +G
Sbjct: 564 MNGFCMSGMLEDG-ERLIEWMLEKGIMPNATTFNSLMKQYCIKNNMRATTEIYKAMHDRG 622
Query: 273 CPIGFQGYEVVVEGCLECR----------EYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y ++++G + R E + G +V T I R+K VE
Sbjct: 623 VMPDSNTYNILIKGHCKARNMKEAWFLHKEMVEKGYSVTAATYDALIRGFYKRKKFVEA 681
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A ++ + ++ G P ++ +A + C++ + ++L EM G P+ T N
Sbjct: 436 AFSVHNQMVQKGLTP----NVVTYTALADGLCKNGEIDVANELLHEMSRKGLQPNVYTYN 491
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V+ LC I + + K+++ M A PD +Y+ ++ A + A E+++ M LN
Sbjct: 492 TIVNGLCKIGNIEQTVKLMEEMDLAGFYPDTITYTTLMDAYCKMGEMAKAHELLRIM-LN 550
Query: 236 MGLMP 240
L P
Sbjct: 551 KRLQP 555
>gi|296090648|emb|CBI41047.3| unnamed protein product [Vitis vinifera]
Length = 514
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 117/277 (42%), Gaps = 5/277 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAI 122
PN SF + K ++E + F ++ P A Y L + +
Sbjct: 187 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 246
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L ++ G +P P L + +A E++ + + +++ EM+ IG PD N ++ C
Sbjct: 247 LDNMIQQGHIPNPMTYLHIMAAH-EKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLAC 305
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM--P 240
+ ++ E +V M + P L+++ I+I + R +A E KEMV GL+ P
Sbjct: 306 KLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMV-GRGLLSAP 364
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ G + ++ +L ++ + ++ + KGC + + + + A
Sbjct: 365 QYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYC 424
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M + G +P K++ GL + ++A + ++
Sbjct: 425 LDMMDAGVMPQPDTFAKLMRGLRKLYNRQIAAEITEK 461
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L EM+ P+ + L+ +LCA ++ EA +V M S C D +Y+ +I
Sbjct: 175 DLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGF 234
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + E++ M+ G +P + + AA E+ + +E++E + + GC
Sbjct: 235 CKWGKISKGYELLDNMI-QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPD 293
Query: 277 FQGYEVVV 284
Y +V+
Sbjct: 294 LNIYNIVI 301
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 63/266 (23%), Positives = 106/266 (39%), Gaps = 21/266 (7%)
Query: 56 SFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLH 114
+ + +P LSNF + I E F +R S R YD Q+
Sbjct: 2 GYSQNTDQVHPNHRLSNFGDKN--CTISERRGGFGLVRLESNRENCTYD-------QNYD 52
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSA--------WLERRCQSQSV--ADILLEMKS 164
+ + R LR VP++ L L + L+ C++ SV A L E
Sbjct: 53 EFSADVEKVYRILRKFHSRVPKLELALQESGVAHVFGCLLDALCKNGSVKEAASLFEDMR 112
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
I + P L+ C +L+EA VL + A PD+ Y+ ++ + A K D
Sbjct: 113 IRFTPTLKHFTSLLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVD 172
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A +++KEM P + AL A ++M +A+ + ++ GCP Y ++
Sbjct: 173 AYDLLKEM-RRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLI 231
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
G + + + + M ++G IP
Sbjct: 232 SGFCKWGKISKGYELLDNMIQQGHIP 257
>gi|326513966|dbj|BAJ92133.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 88/208 (42%), Gaps = 2/208 (0%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
L G VP L A L R Q++ + +M GY P N LV + ++
Sbjct: 273 LEDGLVPDDVSHCHLIEA-LGRAGQAEEALRVFEKMVQEGYGPTTMAYNALVFNFISVGD 331
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L + K K M C P+ ++Y +I A+ R+ DA++M +M L G++P G++
Sbjct: 332 LDRSIKYYKDMVDNNCPPNSDTYCKMIRALLKTRRVADALQMFDDM-LAQGVLPDTGIIT 390
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
L A+ + + + GC I + Y++++E + M E
Sbjct: 391 SFIEPLCTFGPPHAALMIYQKSRKAGCTISLKTYKLLLERLARFGKSGTVLNIWEEMQES 450
Query: 307 GFIPYIKVRQKVVEGLAGVGEWKLATVV 334
G+ ++ + +V GL VG+ A V
Sbjct: 451 GYPSDKEIYEFIVNGLCNVGKVDAAVFV 478
>gi|195655361|gb|ACG47148.1| ATP binding protein [Zea mays]
Length = 551
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M++ G PD T L+ +C + +L A +VL M A PD+ +Y+ + +
Sbjct: 345 ELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVL 404
Query: 217 STARKTNDAVEMMKEMV----------LNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ R +DA+E+ + M+ NM +M M ++ A RA ++W +EM
Sbjct: 405 CSLRNADDALELCERMIEAHCEPSVHTYNMLMM----MFFEMGEAHRA-LDIW--LEM-- 455
Query: 267 FLERKGCPIGFQGYEVVVEGCLECRE 292
+++GC YE+++ G +C E
Sbjct: 456 --DKRGCQRAIDTYEIMIYGLFDCGE 479
>gi|413938979|gb|AFW73530.1| ATP binding protein [Zea mays]
Length = 551
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M++ G PD T L+ +C + +L A +VL M A PD+ +Y+ + +
Sbjct: 345 ELLSDMRTCGCMPDVTTYKDLIEGMCLVGRLDAAYRVLDEMGRAGFPPDIVTYNCFLNVL 404
Query: 217 STARKTNDAVEMMKEMV----------LNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+ R +DA+E+ + M+ NM +M M ++ A RA ++W +EM
Sbjct: 405 CSLRNADDALELCERMIEAHCEPSVHTYNMLMM----MFFEMGEAHRA-LDIW--LEM-- 455
Query: 267 FLERKGCPIGFQGYEVVVEGCLECRE 292
+++GC YE+++ G +C E
Sbjct: 456 --DKRGCQRAIDTYEIMIYGLFDCGE 479
>gi|242073384|ref|XP_002446628.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
gi|241937811|gb|EES10956.1| hypothetical protein SORBIDRAFT_06g019140 [Sorghum bicolor]
Length = 614
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 55/233 (23%), Positives = 94/233 (40%), Gaps = 6/233 (2%)
Query: 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
+ L +P A A + L +G P Q +L+ + R + S ++ EM G
Sbjct: 219 MNRLPSVPEAYAFYLQLLDAGVPPEAKQFNMLMRD--MIRSGKLASARNMFDEMLRRGVP 276
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKG-MSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
P T N L+S +C L +A L+G M+ A PD+ +Y + + A + DAVE
Sbjct: 277 PTVVTFNTLMSGMCKASDL-NSANALRGLMAKAGVAPDVYTYGAFMQGLCKAGRIQDAVE 335
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
M +EM G+ P + + A + +E+ + +G Y + G
Sbjct: 336 MFEEM-RERGVNPNTVVFTTLIDAHCKEGNVAAGLELHREMATRGIKTDLVAYNALANGL 394
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
R+ A V M G P +++G GE +A ++Q ++
Sbjct: 395 CRVRDLKAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSD 447
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 64/134 (47%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ DI+ EM++ G PD T L+ C +L A ++ + MS D +Y+ +
Sbjct: 401 KAANDIVEEMRNNGLKPDKVTYTTLIDGFCKEGELDMAMEMKQEMSDEGVALDEVTYTTL 460
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S + ++ D+ ++ EM + GL P V A N ++ ++++ ++ KG
Sbjct: 461 ISGLSKSGRSVDSERILCEM-MEAGLEPDNTTYTMVIDAFCKNSDVKTGFKLLKEMQNKG 519
Query: 273 CPIGFQGYEVVVEG 286
G Y VV+ G
Sbjct: 520 RKPGVVTYNVVMNG 533
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 2/83 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM++ G P T N +++ C + Q+ A +L M + PD +Y+I++
Sbjct: 511 LLKEMQNKGRKPGVVTYNVVMNGFCILGQMKNADMLLNAMLNIGVCPDDITYNILLDGHC 570
Query: 218 TARKTNDAVEM--MKEMVLNMGL 238
K DA E+ K MV + GL
Sbjct: 571 KHGKVRDAEELKSAKGMVSDFGL 593
>gi|302755068|ref|XP_002960958.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
gi|300171897|gb|EFJ38497.1| hypothetical protein SELMODRAFT_70262 [Selaginella moellendorffii]
Length = 479
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/176 (23%), Positives = 79/176 (44%), Gaps = 5/176 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L M G+ PD T L+ LC D++ EA + +GM+ C PDL ++++++ +
Sbjct: 227 DLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKL 286
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPI 275
RK A+ +++ N P ++ + L R +A +++ + R+G P
Sbjct: 287 CILRKLRPALSVVR----NYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVPP 342
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +G + +E + A + M E+G P + +V+G +A
Sbjct: 343 NVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKADRLDMA 398
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
LER +S+ + + + S P+ + YLV +LC ++ +A + M+ + VPD
Sbjct: 10 LERARRSEQIVVVFRRIFSQDCKPNALSYCYLVKALCRTGKIDKACSTIAEMAREKLVPD 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEM 232
+ +Y++VI + AR+ + A+E + M
Sbjct: 70 VFTYNVVIDTLCKARRISRAIEFFETM 96
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 79/192 (41%), Gaps = 4/192 (2%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
+P+ ++ + L C++ VA + M+ G P T L+ C + Q A
Sbjct: 96 MPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA 155
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
+L+ M+S +C P + SY +I + RK + A ++ +EM L G P + +
Sbjct: 156 YGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKL-AGCKPDRVTYNTLIH 214
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
L + + +A +++ + G + ++EG A GM ++G P
Sbjct: 215 GLCVKQRLHEAKDLLTVMVENGFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAP 274
Query: 311 YIKVRQKVVEGL 322
+ +V L
Sbjct: 275 DLVTHTVLVSKL 286
>gi|356562783|ref|XP_003549648.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 859
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/191 (22%), Positives = 83/191 (43%), Gaps = 1/191 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V+++L EM+S G PD + N L+ + + + EA V + M +A CV + +YS++
Sbjct: 294 EKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKEAMDVFRQMQAAGCVANAATYSVL 353
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +D ++ EM ++ P G + + V + + +
Sbjct: 354 LNLYGKHGRYDDVRDIFLEMKVS-NTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMVEEN 412
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ YE ++ C + Y A K ++ M E+G +P K V+E ++ A
Sbjct: 413 VEPNMETYEGLIFACGKGGLYEDAKKILLHMNEKGIVPSSKAYTGVIEAFGQAALYEEAL 472
Query: 333 VVRQRFAELKS 343
VV E+ S
Sbjct: 473 VVFNTMNEVGS 483
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 80/176 (45%), Gaps = 14/176 (7%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +EM+ P+ T ++S C+ + E+ + + + ++ +P + Y
Sbjct: 537 QYEEAVKSYVEMEKANCEPNELTLEVVLSVYCSAGLVDESEEQFQEIKASGILPSVMCYC 596
Query: 211 IVIGAMSTARKTNDAVEMMKEMV------LNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+++ + + NDA ++ EM+ ++ G+ G +IK +N W+ VE
Sbjct: 597 LMLALYAKNDRLNDAYNLIDEMITMRVSDIHQGI----GQMIKGDFDDESN---WQIVEY 649
Query: 265 I-EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+ + L +GC +G + Y ++E + A + + ++RG P + + K+V
Sbjct: 650 VFDKLNSEGCGLGMRFYNALLEALWWMFQRERAARVLNEASKRGLFPELFRKSKLV 705
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/130 (24%), Positives = 62/130 (47%), Gaps = 7/130 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQL-VEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ EM+ G PD T N L+ + CA L EA V + M+ + VPD+ +YS ++
Sbjct: 229 LFAEMRHEGIQPDVITYNTLLGA-CAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 287
Query: 217 STARKTNDAVEMMKEMVL--NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ E+++EM N+ + ++++ A L + +E A+++ ++ GC
Sbjct: 288 GKLNRLEKVSELLREMESGGNLPDITSYNVLLEAYAELGSIKE---AMDVFRQMQAAGCV 344
Query: 275 IGFQGYEVVV 284
Y V++
Sbjct: 345 ANAATYSVLL 354
>gi|297795031|ref|XP_002865400.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297311235|gb|EFH41659.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 675
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 85/178 (47%), Gaps = 1/178 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I MK G D N ++ + + E+ + + M EC P+LE+YS ++ +
Sbjct: 306 EIFDNMKHKGSVLDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGL 365
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
RK +DA+E+ +EM L+ G++P G+V L + A+ + + + GC I
Sbjct: 366 IKGRKVSDALEIFEEM-LSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCRIS 424
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y+++++ + + M E G+ ++V + +V+GL +G + A +V
Sbjct: 425 ESAYKLLLKRLSRFGKCGMLLNVWDEMQECGYPSDVEVYEYIVDGLCIIGHLENAVLV 482
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 11/173 (6%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N ++S + ++ KVLK M VPD SYS +I + A + ND+VE+
Sbjct: 249 DSCSYNIMISGWSKLGEIEGMEKVLKEMVEGGFVPDCLSYSHLIEGLGRAGRINDSVEIF 308
Query: 230 KEM-----VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
M VL+ + M+ +A + M M++ + C + Y +V
Sbjct: 309 DNMKHKGSVLDANVY--NAMICNFISARDFDESMRYYRRMLD----EECEPNLETYSKLV 362
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
G ++ R+ A + M RG +P + ++ L G A V+ Q+
Sbjct: 363 SGLIKGRKVSDALEIFEEMLSRGILPTTGLVTSFLKPLCSYGPPHAAMVIYQK 415
>gi|125580078|gb|EAZ21224.1| hypothetical protein OsJ_36877 [Oryza sativa Japonica Group]
Length = 726
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 4/172 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ +G PD T N L+ LC ++V+A +++ M C PD SY V+ + ++
Sbjct: 223 MRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKR 282
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ +++ M + GL P Q + L + +A+E + E K + GY
Sbjct: 283 VEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYS 342
Query: 282 VVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+V CL R + K ++G M +G P + VV+G +GE A
Sbjct: 343 AIVHSFCLNGR--MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQA 392
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM S G PD T + +V C I +L +A K++K M +C P+ +++ ++ +
Sbjct: 359 EIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGL 418
Query: 217 STARKTNDAVEMMKE----------------------------------MVLNMGLMPRQ 242
KT++A E++ + +L G P
Sbjct: 419 CKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTT 478
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ + AL +R+ +A + +E + KGC I + V+ G
Sbjct: 479 VEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHG 522
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
KI+Y ++S+ + + +LQR + Q+ + L + + +
Sbjct: 267 KISYYTVMSFLCKE-KRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEF 325
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L E + + D + +V S C ++ EA +++ M S C PD+ +YS V+
Sbjct: 326 LRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCR 385
Query: 219 ARKTNDAVEMMKEMVLN 235
+ + A +MMK M N
Sbjct: 386 IGELDQARKMMKHMYKN 402
>gi|359496995|ref|XP_003635394.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Vitis vinifera]
Length = 622
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 117/277 (42%), Gaps = 5/277 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAI 122
PN SF + K ++E + F ++ P A Y L + +
Sbjct: 295 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 354
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L ++ G +P P L + +A E++ + + +++ EM+ IG PD N ++ C
Sbjct: 355 LDNMIQQGHIPNPMTYLHIMAA-HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLAC 413
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM--P 240
+ ++ E +V M + P L+++ I+I + R +A E KEMV GL+ P
Sbjct: 414 KLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMV-GRGLLSAP 472
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ G + ++ +L ++ + ++ + KGC + + + + A
Sbjct: 473 QYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYC 532
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M + G +P K++ GL + ++A + ++
Sbjct: 533 LDMMDAGVMPQPDTFAKLMRGLRKLYNRQIAAEITEK 569
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L EM+ P+ + L+ +LCA ++ EA +V M S C D +Y+ +I
Sbjct: 283 DLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGF 342
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + E++ M+ G +P + + AA E+ + +E++E + + GC
Sbjct: 343 CKWGKISKGYELLDNMI-QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPD 401
Query: 277 FQGYEVVV 284
Y +V+
Sbjct: 402 LNIYNIVI 409
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E I + P
Sbjct: 177 AIEVLDEMPKYGCEPDEHVFGCL----LDALCKNGSVKEAASLFEDMRIRFTPTLKHFTS 232
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C +L+EA VL + A PD+ Y+ ++ + A K DA +++KEM
Sbjct: 233 LLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEM-RRK 291
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
P + AL A ++M +A+ + ++ GCP Y ++ G + +
Sbjct: 292 ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKG 351
Query: 297 GKTVMGMTERGFIP 310
+ + M ++G IP
Sbjct: 352 YELLDNMIQQGHIP 365
>gi|357512797|ref|XP_003626687.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520709|gb|AET01163.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 501
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 74/165 (44%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD GT + V SLC D++ +A +++K +SS C PD+ SY+ ++ + +R
Sbjct: 154 MVSDGISPDKGTVDLAVRSLCTADRVDDAVELIKELSSKHCSPDIYSYNFLVKNLCKSRT 213
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ + EM + P + + + + +A +++ LE +G Y
Sbjct: 214 LSLVYAFIDEMRTKFDVKPNLVTYTILIDNVCNTKNLREATRLVDILEEEGFKPDCFLYN 273
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+++G A + M E+G P + ++ GL+ G
Sbjct: 274 TIMKGYCMLSRGSEAIEVYNRMKEKGVEPDLITYNTLIFGLSKSG 318
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 32/123 (26%), Positives = 55/123 (44%), Gaps = 1/123 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK G PD T N L+ L ++ EA K+L+ M+ PD +Y+ ++ M +
Sbjct: 295 MKEKGVEPDLITYNTLIFGLSKSGRVSEAKKLLRVMAEKGHFPDEVTYTSLMNGMCRKGE 354
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
T A+ +++EM + G P + L +R KA+E+ ++ G + Y
Sbjct: 355 TLAALALLEEMEMK-GCSPNTCTYNTLLHGLCKSRMFDKAMELYGAMKSDGLKLDMASYA 413
Query: 282 VVV 284
V
Sbjct: 414 TFV 416
>gi|302780485|ref|XP_002972017.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
gi|300160316|gb|EFJ26934.1| hypothetical protein SELMODRAFT_96794 [Selaginella moellendorffii]
Length = 1116
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S + ++ E+ G+HPD T N L+ SLC L EA ++ MSS CVP++
Sbjct: 227 CKSNELGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRSCVPNV 286
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMV-LNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+YS++I + + ++A E+++EM + ++P L +A E++
Sbjct: 287 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 346
Query: 266 EFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
L + + +++G +C + A M G++P + +V GL
Sbjct: 347 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 405
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 86/179 (48%), Gaps = 4/179 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ DIL M ++G P+ T N LV LC ++ EA + L+ M S+ CVPD +Y
Sbjct: 617 QVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 676
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++ A+ A +T+DA++++ E+ + G P + L + + +A+ ++E +
Sbjct: 677 SLVYALCRASRTDDALQLVSELK-SFGWDPDTVTYNILVDGLWKSGQTEQAITVLEEMVG 735
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT---ERGFIPYIKVRQKVVEGLAGVG 326
KG Y +++ + + A + M+ R +P + ++ GL VG
Sbjct: 736 KGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSRCCVPNVVTYSVLINGLCKVG 794
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 66/127 (51%), Gaps = 7/127 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCN 175
A ++ + G VP ++ +A + C++ + A ++E M G PD T +
Sbjct: 379 ACSVFDDMIAGGYVP----NVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYS 434
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV + C ++ EA ++L GM+S C P++ +++ +I + + ++ +A +M +M L
Sbjct: 435 VLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDRSGEAFQMFDDMALK 494
Query: 236 MGLMPRQ 242
GL+P +
Sbjct: 495 HGLVPDK 501
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 73/152 (48%), Gaps = 5/152 (3%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L R+LR G + V + S+ ++ C Q+ ++ +M + GY P+ T N L++
Sbjct: 839 LMRSLRDGSLRVSPDTVTFST-LIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNVLMN 897
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC D++ A +++ M PD+ +YS+++ A A ++A+E++ M + G
Sbjct: 898 GLCKTDKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMA-SRGCT 956
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
P + L + + +A +M + + K
Sbjct: 957 PNVVTFNSIIDGLCKSDQSGEAFQMFDDMTLK 988
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T + LV + C + EA ++L GM+S C P++ +++ +I + + +
Sbjct: 915 MVDKGVTPDVITYSVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGLCKSDQ 974
Query: 222 TNDAVEMMKEMVLNMGLMPRQ 242
+ +A +M +M L GL P +
Sbjct: 975 SGEAFQMFDDMTLKHGLAPDK 995
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 83/174 (47%), Gaps = 10/174 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG-----YHPDCGT 173
A ++Q R C +P I + +++L+ C+ A+ M+S+ PD T
Sbjct: 305 ARELIQEMTRKSCDVLPNI--ITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVT 362
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ L+ LC Q+ EA V M + VP++ +Y+ ++ + A K A M++ MV
Sbjct: 363 FSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGLCKADKMERAHAMIESMV 422
Query: 234 LNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ G+ P + V A +A+R + +A+E++ + +GC + +++G
Sbjct: 423 -DKGVTPDVITYSVLVDAFCKASR-VDEALELLHGMASRGCTPNVVTFNSIIDG 474
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 70/162 (43%), Gaps = 3/162 (1%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSAECVPDLESYSIVIGAMSTAR 220
KS P+ T N + LC + EA ++++ + S PD ++S +I +
Sbjct: 809 KSCDVLPNIITYNSFLDGLCKQSMMAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 868
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+T++A + +M+ G +P + L +M +A MIE + KG Y
Sbjct: 869 QTDEACNVFDDMIAG-GYVPNVVTYNVLMNGLCKTDKMERAHAMIESMVDKGVTPDVITY 927
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
V+V+ + A + + GM RG P + +++GL
Sbjct: 928 SVLVDAFCKASHVDEALELLHGMASRGCTPNVVTFNSIIDGL 969
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 96/245 (39%), Gaps = 42/245 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG------------ 166
A L+ + SGCVP L A L R ++ ++ E+KS G
Sbjct: 656 ACQFLEEMVSSGCVPDSITYGSLVYA-LCRASRTDDALQLVSELKSFGWDPDTVTYNILV 714
Query: 167 -----------------------YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-- 201
+HPD T N L+ SLC L EA ++ MSS
Sbjct: 715 DGLWKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRVSR 774
Query: 202 -CVPDLESYSIVIGAMSTARKTNDAVEMMKEMV-LNMGLMPRQGMVIKVAAALRANREMW 259
CVP++ +YS++I + + ++A E+++EM+ + ++P L M
Sbjct: 775 CCVPNVVTYSVLINGLCKVGRIDEARELIQEMMRKSCDVLPNIITYNSFLDGLCKQSMMA 834
Query: 260 KAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+A E++ L + + +++G +C + A M G++P +
Sbjct: 835 EACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQTDEACNVFDDMIAGGYVPNVVTYNV 894
Query: 318 VVEGL 322
++ GL
Sbjct: 895 LMNGL 899
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 68/162 (41%), Gaps = 3/162 (1%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSAECVPDLESYSIVIGAMSTAR 220
KS P+ T N + LC EA ++++ + S PD ++S +I +
Sbjct: 315 KSCDVLPNIITYNSFLDGLCKQSMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCG 374
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A + +M+ G +P + L +M +A MIE + KG Y
Sbjct: 375 QIDEACSVFDDMIAG-GYVPNVITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITY 433
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
V+V+ + A + + GM RG P + +++GL
Sbjct: 434 SVLVDAFCKASRVDEALELLHGMASRGCTPNVVTFNSIIDGL 475
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 49/224 (21%), Positives = 96/224 (42%), Gaps = 6/224 (2%)
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L L + AL + R L VP +L++ A + S + EM +
Sbjct: 542 LSKLGDVSRALQVYNRMLELELVPDKVTFNILIAGACKAGNFEQASA--LFEEMVAKNLQ 599
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T L+ LC Q+ A +L M + P++ +Y+ ++ + + + +A +
Sbjct: 600 PDVMTFGALIDGLCKAGQVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQF 659
Query: 229 MKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++EMV + G +P + AL RA+R A++++ L+ G Y ++V+G
Sbjct: 660 LEEMV-SSGCVPDSITYGSLVYALCRASR-TDDALQLVSELKSFGWDPDTVTYNILVDGL 717
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + A + M +G P + +++ L G+ + A
Sbjct: 718 WKSGQTEQAITVLEEMVGKGHHPDVVTYNTLIDSLCKAGDLEEA 761
>gi|147767159|emb|CAN71515.1| hypothetical protein VITISV_021787 [Vitis vinifera]
Length = 655
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/277 (20%), Positives = 117/277 (42%), Gaps = 5/277 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAI 122
PN SF + K ++E + F ++ P A Y L + +
Sbjct: 328 PNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKGYEL 387
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L ++ G +P P L + +A E++ + + +++ EM+ IG PD N ++ C
Sbjct: 388 LDNMIQQGHIPNPMTYLHIMAA-HEKKEELEECIELMEEMRKIGCTPDLNIYNIVIRLAC 446
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM--P 240
+ ++ E +V M + P L+++ I+I + R +A E KEMV GL+ P
Sbjct: 447 KLGEIKEGVRVWNEMEATGLSPGLDTFVIMIHGFLSQRCLVEACEFFKEMV-GRGLLSAP 505
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ G + ++ +L ++ + ++ + KGC + + + + A
Sbjct: 506 QYGTLKELLNSLLRAEKLEMSKDVWSCIMTKGCDLNVYAWTIWIHALFSNGHVKEACSYC 565
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M + G +P K++ GL + ++A + ++
Sbjct: 566 LDMMDAGVMPQPDTFAKLMRGLRKLYNRQIAAEITEK 602
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 60/128 (46%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L EM+ P+ + L+ +LCA ++ EA +V M S C D +Y+ +I
Sbjct: 316 DLLKEMRRKECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGF 375
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + E++ M+ G +P + + AA E+ + +E++E + + GC
Sbjct: 376 CKWGKISKGYELLDNMI-QQGHIPNPMTYLHIMAAHEKKEELEECIELMEEMRKIGCTPD 434
Query: 277 FQGYEVVV 284
Y +V+
Sbjct: 435 LNIYNIVI 442
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 48/194 (24%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E I + P
Sbjct: 210 AIEVLDEMPKYGCEPDEHVFGCL----LDALCKNGSVKEAASLFEDMRIRFTPTLKHFTS 265
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C +L+EA VL + A PD+ Y+ ++ + A K DA +++KEM
Sbjct: 266 LLYGWCREGKLMEAKYVLVQIREAGFEPDIVVYNNLLTGYAAAGKMVDAYDLLKEM-RRK 324
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
P + AL A ++M +A+ + ++ GCP Y ++ G + +
Sbjct: 325 ECEPNVMSFTTLIQALCAKKKMEEAMRVFFEMQSCGCPADAVTYTTLISGFCKWGKISKG 384
Query: 297 GKTVMGMTERGFIP 310
+ + M ++G IP
Sbjct: 385 YELLDNMIQQGHIP 398
>gi|77557056|gb|ABA99852.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
Length = 726
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 77/172 (44%), Gaps = 4/172 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ +G PD T N L+ LC ++V+A +++ M C PD SY V+ + ++
Sbjct: 223 MRRVGVEPDVYTYNCLIKGLCGARRVVDAMEMIGVMLQNGCPPDKISYYTVMSFLCKEKR 282
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ +++ M + GL P Q + L + +A+E + E K + GY
Sbjct: 283 VEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEFLRESEGKRFRVDEVGYS 342
Query: 282 VVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+V CL R + K ++G M +G P + VV+G +GE A
Sbjct: 343 AIVHSFCLNGR--MAEAKEIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQA 392
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 68/164 (41%), Gaps = 34/164 (20%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM S G PD T + +V C I +L +A K++K M +C P+ +++ ++ +
Sbjct: 359 EIVGEMISKGCQPDVVTYSTVVDGFCRIGELDQARKMMKHMYKNDCKPNTVTHTALLNGL 418
Query: 217 STARKTNDAVEMMKE----------------------------------MVLNMGLMPRQ 242
KT++A E++ + +L G P
Sbjct: 419 CKVGKTSEAWELLNKSEEEWWTPSDITYSVVMHGFRREGKLKESCDVVVQMLQKGFFPTT 478
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ + AL +R+ +A + +E + KGC I + V+ G
Sbjct: 479 VEINLLIHALCKDRKPAEAKDFMEQCQSKGCTINVVNFTTVIHG 522
Score = 38.5 bits (88), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
KI+Y ++S+ + + +LQR + Q+ + L + + +
Sbjct: 267 KISYYTVMSFLCKE-KRVEEVRGLLQRMRNDAGLFPDQVTYNVLIHGLAKHGHADEALEF 325
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L E + + D + +V S C ++ EA +++ M S C PD+ +YS V+
Sbjct: 326 LRESEGKRFRVDEVGYSAIVHSFCLNGRMAEAKEIVGEMISKGCQPDVVTYSTVVDGFCR 385
Query: 219 ARKTNDAVEMMKEMVLN 235
+ + A +MMK M N
Sbjct: 386 IGELDQARKMMKHMYKN 402
>gi|224130706|ref|XP_002328356.1| predicted protein [Populus trichocarpa]
gi|222838071|gb|EEE76436.1| predicted protein [Populus trichocarpa]
Length = 613
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 80/183 (43%), Gaps = 1/183 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M +G HPD T N L++ LC ++ EA ++ M P++ SY+ VI +
Sbjct: 150 VLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMVKRGHEPNVISYTTVINGLC 209
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
T+ AV++ K+M N G P + +L +R + A+E + + +G P
Sbjct: 210 KTGNTSMAVDVFKKMEQN-GCKPNVVTYSTIIDSLCKDRLVNDAMEFLSEMVERGIPPNV 268
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +V G + A + M R +P +V+GL G A +V +
Sbjct: 269 FTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGLCKEGMVSEARLVFET 328
Query: 338 FAE 340
E
Sbjct: 329 MTE 331
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 88/215 (40%), Gaps = 4/215 (1%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA R +R P V + L S ++ Q +V + +M + + N L
Sbjct: 77 ALASFYRMVRINPRPSVVEFGKFLGS--FAKKKQYSTVVSLCNQMDLFRVTHNVYSLNIL 134
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ LC ++ + + VL M PD +++ +I + K +AVE+ EMV G
Sbjct: 135 INCLCRLNHVDFSVSVLGKMFKLGIHPDAITFNALINGLCNEGKIKEAVELFNEMV-KRG 193
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P V L AV++ + +E+ GC Y +++ + R A
Sbjct: 194 HEPNVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAM 253
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ + M ERG P + +V G +G+ AT
Sbjct: 254 EFLSEMVERGIPPNVFTYNSIVHGFCNLGQLNEAT 288
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/214 (20%), Positives = 94/214 (43%), Gaps = 12/214 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHP 169
L+ + ++++L + + G P + +A + C + ++ EM G+ P
Sbjct: 141 LNHVDFSVSVLGKMFKLGIHP----DAITFNALINGLCNEGKIKEAVELFNEMVKRGHEP 196
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ + +++ LC A V K M C P++ +YS +I ++ R NDA+E +
Sbjct: 197 NVISYTTVINGLCKTGNTSMAVDVFKKMEQNGCKPNVVTYSTIIDSLCKDRLVNDAMEFL 256
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
EMV G+ P + ++ +A + + + + + ++V+G
Sbjct: 257 SEMV-ERGIPPNVFTYNSIVHGFCNLGQLNEATRLFKEMVGRDVMPNTVTFTILVDGL-- 313
Query: 290 CREYILAGKTVM--GMTERGFIPYIKVRQKVVEG 321
C+E +++ ++ MTE+G P I +++G
Sbjct: 314 CKEGMVSEARLVFETMTEKGVEPDISTYNALMDG 347
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 12/184 (6%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T N L+ C + EA KV + M C P SY+I+I +R+
Sbjct: 329 MTEKGVEPDISTYNALMDGYCLQRLMNEAKKVFEIMIRKGCAPGAHSYNILINGYCKSRR 388
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG----F 277
++A ++ EM + L P + + ++ ++ + E + L ++ C G
Sbjct: 389 MDEAKSLLAEM-YHKALNPD---TVTYSTLMQGLCQLGRPKEALN-LFKEMCSYGPHPNL 443
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y ++++G + A K + M E+ P I ++EG+ G+ ++A ++
Sbjct: 444 VTYVILLDGFCKHGHLDEALKLLKSMKEKKLEPNIVHYTILIEGMFIAGKLEVA---KEL 500
Query: 338 FAEL 341
F++L
Sbjct: 501 FSKL 504
>gi|302784788|ref|XP_002974166.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
gi|300158498|gb|EFJ25121.1| hypothetical protein SELMODRAFT_100825 [Selaginella moellendorffii]
Length = 647
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 1/198 (0%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+A L C++ + +L + + PD +++ LC +L EA VL+ A C
Sbjct: 13 TALLNGLCKTGQLDRAMLLLDEMPCSPDMVAFTVVINGLCREKRLDEAFSVLERAVRAGC 72
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD +Y++ I + A + +DA +++K+M L V L+A R + +A+
Sbjct: 73 EPDYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTVTYTALVDGLLKAGR-LDEAM 131
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++E + KG + Y VV++G + A + + M G P V ++ GL
Sbjct: 132 AILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDMLGNGCRPDAFVYTALISGL 191
Query: 323 AGVGEWKLATVVRQRFAE 340
A +G+ A V + E
Sbjct: 192 AKIGKLDEALVYLNQMVE 209
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 99/232 (42%), Gaps = 10/232 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+AIL++ + G P + ++ L + + + I ++M G PD
Sbjct: 127 LDEAMAILEQMVEKGNSPTLKTYTVVIDG-LSKAGRVEEARRIFVDMLGNGCRPDAFVYT 185
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECV----PDLESYSIVIGAMSTARKTNDAVEMMKE 231
L+S L I +L EA L M C PD+ +++VI + + DA+ E
Sbjct: 186 ALISGLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNLEDALAYFDE 245
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
+ ++ L + VAA +A R + + ER+ P F Y +V+G L+
Sbjct: 246 LDDSLDLTHFTFNPL-VAALCKAERTEEAIAFVKKMSERRCFPTLFT-YTSLVDGFLKLG 303
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
A + ERGFIP +++GL +G + +RF E+++
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGC---ERFHEMRN 352
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 78/166 (46%), Gaps = 8/166 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L A ++L+R +R+GC P + + +++ C+++ V D +L +M P
Sbjct: 57 LDEAFSVLERAVRAGCEP----DYVTYNVFIDGLCKAERVDDAFQLLKKMDEKKCLPTTV 112
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T LV L +L EA +L+ M P L++Y++VI +S A + +A + +M
Sbjct: 113 TYTALVDGLLKAGRLDEAMAILEQMVEKGNSPTLKTYTVVIDGLSKAGRVEEARRIFVDM 172
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
+ N G P + + + L ++ +A+ + + GC G +
Sbjct: 173 LGN-GCRPDAFVYTALISGLAKIGKLDEALVYLNQMVENGCARGVE 217
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 96/233 (41%), Gaps = 5/233 (2%)
Query: 97 RPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
RP Y L+S L + L AL L + + +GC + +++ + + + C S ++
Sbjct: 178 RPDAFVYTALIS-GLAKIGKLDEALVYLNQMVENGCARGVEPDVVIHNLVIRQLCASGNL 236
Query: 156 ADILLEMKSIGYHPDCG--TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
D L + D T N LV++LC ++ EA +K MS C P L +Y+ ++
Sbjct: 237 EDALAYFDELDDSLDLTHFTFNPLVAALCKAERTEEAIAFVKKMSERRCFPTLFTYTSLV 296
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ ++A+ +KE V G +P + L + + E + +G
Sbjct: 297 DGFLKLGRLDEALLQLKEAV-ERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGY 355
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++G ++ + A + M + G + +++GL G
Sbjct: 356 EPDAVTYAALIDGFMKAKMIPKAHRVYRQMLQSGTVVSTVTYNIILDGLCKAG 408
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 60/286 (20%), Positives = 111/286 (38%), Gaps = 13/286 (4%)
Query: 49 QIPELLGSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105
++ E L +EA + P+ ++ S ++ ++E E F +R R A Y
Sbjct: 304 RLDEALLQLKEAVERGFIPDAVTYTSIIDGLCKLGRVEEGCERFHEMRNRGYEPDAVTYA 363
Query: 106 -LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLE 161
L +P A + ++ L+SG V + + + L+ C++ VA+ L
Sbjct: 364 ALIDGFMKAKMIPKAHRVYRQMLQSGTV----VSTVTYNIILDGLCKAGRVAEAYATFLA 419
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G T + L+ C+ + A ++ + M C P+L SY+I+I + A K
Sbjct: 420 MEERGCVATVVTYSALMDGFCSEGNVSAAVELFRRMLDRGCEPNLVSYNIIIRGLCRAGK 479
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE-MWKAVEMIEFLERKGCPIGFQGY 280
A E +L L P L + + VE+ E + +G Y
Sbjct: 480 LAKAY-FYFEKLLQRRLCPDVYTFNSFLHGLCQRLDTVGDGVELFESMVSQGTSPNLHSY 538
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++++G + + M RG P + V ++ L G
Sbjct: 539 SILMDGICRAGGLEVTLEIFHEMVSRGVAPDVVVFNTLIRWLCIAG 584
>gi|357161570|ref|XP_003579133.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Brachypodium distachyon]
Length = 721
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 66/243 (27%), Positives = 105/243 (43%), Gaps = 23/243 (9%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI--RLLLSSAWLERRCQS 152
R P+ +LSY+ L A+ +LQ GC P I + R ++
Sbjct: 158 RRGPRQFAHLMLSYSRAG--KLRSAMRVLQLMQTDGCAPDISICNVAVNVLVVAGRVDKA 215
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
AD M+ +G PD T N L+ LC++ ++VEA +++ M C PD SY V
Sbjct: 216 LGFAD---RMRRVGVEPDVVTYNCLIKGLCSVRRVVEALEMIGVMLKNGCPPDKISYYTV 272
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFL- 268
+ + ++ ++ ++ M + GL+ Q M+I V A + A E +EFL
Sbjct: 273 MSFLCKEKRVSEVRSLLATMRNDAGLLTDQVTYNMLIHVLA------KHGHADEALEFLR 326
Query: 269 --ERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAG 324
E K + GY VV CL R + K ++G M + P + VV+G
Sbjct: 327 ESEGKRFRVDEVGYSAVVHSFCLNGR--MAEAKEIVGEMISKECHPDVVTYSAVVDGFCR 384
Query: 325 VGE 327
+GE
Sbjct: 385 IGE 387
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+V S C ++ EA +++ M S EC PD+ +YS V+ + + A +MMK M N
Sbjct: 343 VVHSFCLNGRMAEAKEIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKN- 401
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG----CPIGFQGYEVVVEGCLECRE 292
G P ++ A L ++ K+ E E L + G P Y VV+ G +
Sbjct: 402 GCKPN---IVTHTALLNGLCKVGKSSEAWELLNKSGEDWWTPSDIT-YSVVMHGFRREGK 457
Query: 293 YILAGKTVMGMTERGFIP 310
+ V M ++GF P
Sbjct: 458 LKESCDVVAQMLQKGFFP 475
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 66/164 (40%), Gaps = 34/164 (20%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM S HPD T + +V C I ++ +A K++K M C P++ +++ ++ +
Sbjct: 358 EIVGEMISKECHPDVVTYSAVVDGFCRIGEIDQARKMMKHMYKNGCKPNIVTHTALLNGL 417
Query: 217 STARKTNDAVEMMKE----------------------------------MVLNMGLMPRQ 242
K+++A E++ + +L G P
Sbjct: 418 CKVGKSSEAWELLNKSGEDWWTPSDITYSVVMHGFRREGKLKESCDVVAQMLQKGFFPTT 477
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ + AL + +A E +E + KGC I + V+ G
Sbjct: 478 VEINLLIHALCKEGKPAEAKEFMEQCQSKGCTINVVNFTTVIHG 521
>gi|297724885|ref|NP_001174806.1| Os06g0499301 [Oryza sativa Japonica Group]
gi|52076487|dbj|BAD45366.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|125597333|gb|EAZ37113.1| hypothetical protein OsJ_21452 [Oryza sativa Japonica Group]
gi|255677074|dbj|BAH93534.1| Os06g0499301 [Oryza sativa Japonica Group]
Length = 642
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+ PD +YS V+ A++ A + +DAV ++ EMV + G++ + + A LRA ++
Sbjct: 204 DLAPDKFTYSTVVSALADAGRVDDAVALVHEMVAD-GVVAAEAFNPVLRAMLRAG-DVKG 261
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A ++ F++ KGC Y V+V G L C A + M G +P + VV+
Sbjct: 262 AAKLFGFMQLKGCVPTTATYNVLVHGLLVCGRAGAAMGVMRRMEREGVVPGVMTYGAVVD 321
Query: 321 GLAGVGE----WKLA 331
GL G WK+A
Sbjct: 322 GLVRCGRVKDAWKVA 336
>gi|302821481|ref|XP_002992403.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
gi|300139819|gb|EFJ06553.1| hypothetical protein SELMODRAFT_42645 [Selaginella moellendorffii]
Length = 448
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 92/219 (42%), Gaps = 8/219 (3%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSL 181
R ++ C P +L A C+S ++D IL +M G P+ T N L++
Sbjct: 92 RDMQRHCAPSVITYTILVDAL----CKSARISDASLILEDMIEAGCAPNVVTYNTLINGF 147
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C + + EA + M C PD+ +Y+I+I + D ++++EMV G P
Sbjct: 148 CKLGNMDEAVVLFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMV-KYGCEPN 206
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ +L + + A + + + R+ C + ++++ + + LA +
Sbjct: 207 FITYNTLMDSLVKSGKYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQ 266
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
MT+RG +P I ++ G A + +R E
Sbjct: 267 LMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTE 305
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 114/293 (38%), Gaps = 8/293 (2%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESF 89
T + A+D+QQ LL E+ P+ + + N R+ D L +
Sbjct: 35 TYSTLINGFCKARDFQQAYRLLDEMEKRGIVPHNAVYNTIIKGLCDNGRV---DSALVHY 91
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149
++ P + +L L + A IL+ + +GC P L + + +
Sbjct: 92 RDMQRHCAPSVITYTILVDALCKSARISDASLILEDMIEAGCAPNVVTYNTLINGFCKLG 151
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
++V + +M PD T N L+ C ++ + AK+L+ M C P+ +Y
Sbjct: 152 NMDEAVV-LFNQMLENSCSPDVFTYNILIDGYCKQERPQDGAKLLQEMVKYGCEPNFITY 210
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ ++ ++ + K DA + +M+L P + ++ A E+ + +
Sbjct: 211 NTLMDSLVKSGKYIDAFNL-AQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMT 269
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+GC Y +++ G A + + MTE G P + +V GL
Sbjct: 270 DRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGL 322
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 93/210 (44%), Gaps = 10/210 (4%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIR 138
K ID + + LR +P L+ + L LA + Q GC+P +
Sbjct: 222 KYIDAFNLAQMMLRRDCKPSHFTFNLMIDMFCKVGQLDLAYELFQLMTDRGCLPDIYTYN 281
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++S A C++ + D +L M G PD T N +VS LC Q+ EA +V +
Sbjct: 282 IMISGA-----CRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKASQVDEAYEVYE 336
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ + D+ + S +I + +R+ +DA ++++EM N I + +A+
Sbjct: 337 VLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKAD 396
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++ K++ + KGC Y +V++
Sbjct: 397 -QLDKSLAFFSEMLDKGCVPTVITYSIVID 425
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/223 (21%), Positives = 97/223 (43%), Gaps = 3/223 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y+ L+ ++S + A + Q LR C P L + Q ++
Sbjct: 208 ITYNTLMDSLVKSGKYID-AFNLAQMMLRRDCKP-SHFTFNLMIDMFCKVGQLDLAYELF 265
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
M G PD T N ++S C +++ +A ++L+ M+ A C PD+ +Y+ ++ + A
Sbjct: 266 QLMTDRGCLPDIYTYNIMISGACRANRIDDARQLLERMTEAGCPPDVVTYNSIVSGLCKA 325
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ ++A E+ E++ N G + L +R + A +++ +ER G
Sbjct: 326 SQVDEAYEVY-EVLRNGGYFLDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVA 384
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++ G + + + M ++G +P + V++ L
Sbjct: 385 YTILIHGFCKADQLDKSLAFFSEMLDKGCVPTVITYSIVIDKL 427
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ S ++ C+S+ + D +L EM+ G PD L+ C DQL ++
Sbjct: 345 LDVVTCSTLIDGLCKSRRLDDAEKLLREMERNGSAPDVVAYTILIHGFCKADQLDKSLAF 404
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
M CVP + +YSIVI + + + D ++K M+
Sbjct: 405 FSEMLDKGCVPTVITYSIVIDKLCKSARVRDGCMLLKTML 444
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 64/167 (38%), Gaps = 2/167 (1%)
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
CN L+S+ + EA + K C PD +YS +I AR A ++ EM
Sbjct: 1 CNCLLSAFVRKKKAQEAYDLFKNHLCGLCSPDSITYSTLINGFCKARDFQQAYRLLDEME 60
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
G++P + + L N + A+ ++R C Y ++V+ +
Sbjct: 61 -KRGIVPHNAVYNTIIKGLCDNGRVDSALVHYRDMQRH-CAPSVITYTILVDALCKSARI 118
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E G P + ++ G +G A V+ + E
Sbjct: 119 SDASLILEDMIEAGCAPNVVTYNTLINGFCKLGNMDEAVVLFNQMLE 165
>gi|356551783|ref|XP_003544253.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 576
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 55/237 (23%), Positives = 107/237 (45%), Gaps = 9/237 (3%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD--- 157
YD +L +L L A+ +L R L+S C P ++ + ++ C+ V
Sbjct: 183 TYDAVLC-SLCDRGKLKQAMQVLGRQLQSKCYP----DVVTCTVLIDATCKESGVGQAMK 237
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM++ G PD T N L+ C +L EA + LK + S C PD+ S+++++ ++
Sbjct: 238 LFNEMRNKGCKPDVVTYNVLIKGFCKGGRLDEAIRFLKKLPSYGCQPDVISHNMILRSLC 297
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + DA++++ M L G +P + L + KA+ ++E + + G
Sbjct: 298 SGGRWMDAMKLLATM-LRKGCLPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNS 356
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + +++G + A + + M RG P I ++ L G+ A V+
Sbjct: 357 RSFNPLIQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVI 413
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/230 (24%), Positives = 103/230 (44%), Gaps = 15/230 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-----PQIRLLLSSAWLERRCQSQS 154
+ ++ L+++ Q L AL +L+ + G P P I+ + ++R +
Sbjct: 322 VTFNILINFLCQK-GLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNGKGIDRAIEYLE 380
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ M S G +PD T N L+++LC ++ +A +L +SS C P L SY+ VI
Sbjct: 381 I------MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVID 434
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC- 273
+ K AVE+++EM GL P V L ++ +A++ +L+R
Sbjct: 435 GLLKVGKAELAVELLEEMCYK-GLKPDLITCTSVVGGLSREGKVREAMKFFHYLKRFAIR 493
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
P F Y ++ G + ++ LA + M +G P +++G+
Sbjct: 494 PNAFI-YNSIITGLCKSQQTSLAIDFLADMVAKGCKPTEATYTTLIKGIT 542
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 89/214 (41%), Gaps = 39/214 (18%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L LR GC+P V +L++ +L ++ ++L M G+ P+ + N L
Sbjct: 305 AMKLLATMLRKGCLPSVVTFNILIN--FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 362
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C + A + L+ M S C PD+ +Y+I++ A+ K +DAV ++ +
Sbjct: 363 IQGFCNGKGIDRAIEYLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ------ 416
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L KGC Y V++G L+ + LA
Sbjct: 417 ------------------------------LSSKGCSPSLISYNTVIDGLLKVGKAELAV 446
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M +G P + VV GL+ G+ + A
Sbjct: 447 ELLEEMCYKGLKPDLITCTSVVGGLSREGKVREA 480
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 75/166 (45%), Gaps = 7/166 (4%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C+S + + L + +G P+ T + ++ SLC +L +A +VL ++C PD+ +
Sbjct: 160 CKSGEIEEALRVLDRMGVSPNAATYDAVLCSLCDRGKLKQAMQVLGRQLQSKCYPDVVTC 219
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+++I A A+++ EM N G P V+ ++ + + E I FL+
Sbjct: 220 TVLIDATCKESGVGQAMKLFNEM-RNKGCKPD---VVTYNVLIKGFCKGGRLDEAIRFLK 275
Query: 270 R---KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ GC + +++ ++ A K + M +G +P +
Sbjct: 276 KLPSYGCQPDVISHNMILRSLCSGGRWMDAMKLLATMLRKGCLPSV 321
>gi|255586139|ref|XP_002533731.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223526356|gb|EEF28650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 835
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/297 (22%), Positives = 124/297 (41%), Gaps = 13/297 (4%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RP-KIA 101
+ + +I ELL + + F+ + R +IDE E F L+ +P +
Sbjct: 271 GRSWDKILELLDEMRSRGLDFDEFTCSTVLSACGREGLIDEAREFFSGLKSEGYKPGTVT 330
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL + AL++L + C P + +A++ R + A ++
Sbjct: 331 YNALL-HVFGKAGIFSEALSVLSEMEENNCPPDAVTYNEVVAAYV-RAGFHEEGAVVIDA 388
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T ++++ + + +A ++ M CVP++ +Y+ V+G +
Sbjct: 389 MASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQMMELGCVPNVATYNAVLGMLGKKSL 448
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ--- 278
+ + ++++ M LN G P + A+ + M K V + F E K C GF+
Sbjct: 449 SEEMMKILGHMKLN-GCSPNH-ITWNTMLAMCGKKGMHKYVNQV-FREMKNC--GFEPDR 503
Query: 279 -GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ ++ C A K M + GF P I ++ LA G+WK A V
Sbjct: 504 DTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYNALLNALARRGDWKAAESV 560
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 55/236 (23%), Positives = 98/236 (41%), Gaps = 6/236 (2%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPL 92
T E V A V A +++ ++ + PN ++ + R+ ID+ LE F +
Sbjct: 365 TYNEVVAAYVRAGFHEEGAVVIDAMASKGIMPNAVTYTTIINAYGRVGDIDKALEMFDQM 424
Query: 93 RPRS-RPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
P +A Y+ +L L + IL +GC P I A ++
Sbjct: 425 MELGCVPNVATYNAVLG-MLGKKSLSEEMMKILGHMKLNGCSP-NHITWNTMLAMCGKKG 482
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ V + EMK+ G+ PD T N L+S+ +AAK+ + M A P + +Y+
Sbjct: 483 MHKYVNQVFREMKNCGFEPDRDTFNTLISAYGRCGSNNDAAKMHEEMIKAGFSPCINTYN 542
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
++ A++ A ++ +M N G P + + + + K +EMIE
Sbjct: 543 ALLNALARRGDWKAAESVILDM-RNKGFRPSETSYSLMVHSYAKGGNV-KGIEMIE 596
>gi|147840993|emb|CAN64120.1| hypothetical protein VITISV_037241 [Vitis vinifera]
Length = 418
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 2/147 (1%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+L+ +GC P + S + + ++ +L EM G PD + N ++S
Sbjct: 274 FVVLEEMRENGCKPDTVTYNAMISGFCNEK-DFEAAYGVLEEMVVKGCKPDVISYNVIIS 332
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC + EA + + M C PD+ SY I+ + + N+A ++ EMV G
Sbjct: 333 GLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFK-GYA 391
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIE 266
P+ K AL + RE+ V+ E
Sbjct: 392 PKSASXTKFVEALCSGRELGVVVQSFE 418
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/153 (23%), Positives = 67/153 (43%), Gaps = 1/153 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D G + L+++L + + E VL+ M C PD +Y+ +I + A ++
Sbjct: 253 DSGIYSTLIAALFKVGRKDEVFVVLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVL 312
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+EMV+ G P + + L + +A ++ E + R+GC Y ++ +G E
Sbjct: 313 EEMVVK-GCKPDVISYNVIISGLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCE 371
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ A + M +G+ P K VE L
Sbjct: 372 GMQFNEAAFILDEMVFKGYAPKSASXTKFVEAL 404
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PD 205
C S + D + EM P+ T L+S LC +L EA+++ + M V P+
Sbjct: 159 CLSGRLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCRDSRLDEASRLKEDMVKVFNVKPN 218
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y+ ++ + + + A E+ KEMV N L G+ + AAL + ++
Sbjct: 219 AFVYASLMKGLCRVNELSLAFELKKEMVANK-LRLDSGIYSTLIAALFKVGRKDEVFVVL 277
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + GC Y ++ G +++ A + M +G P + ++ GL
Sbjct: 278 EEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVVKGCKPDVISYNVIISGLCKE 337
Query: 326 GEWKLAT 332
G+W+ A
Sbjct: 338 GKWREAN 344
>gi|224056581|ref|XP_002298921.1| predicted protein [Populus trichocarpa]
gi|222846179|gb|EEE83726.1| predicted protein [Populus trichocarpa]
Length = 326
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 85/195 (43%), Gaps = 18/195 (9%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++ L+ +G D + N L+ LC L A VL C P++ ++S ++
Sbjct: 135 VHEVYLQAPMLGIEIDVCSLNILIKGLCENGDLEAAFNVLDEFPKQRCEPNVRTFSTLMH 194
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALRANREMWKAVEMIEFLER- 270
+ K ++A +++ M ++G+ I + R+ K VE +E LER
Sbjct: 195 GLCKKGKVDEAFGLLER-------MEKEGIDADTITFNILISGLRKQGKVVEGLELLERM 247
Query: 271 --KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG-- 326
KGC Y+ ++ G L+ +Y+ + ++ M +G P +K+V GL
Sbjct: 248 NIKGCEPNAGSYQEILYGLLDAEKYVEGKEFMVRMIGQGVDPSFVSYKKLVHGLCKERLL 307
Query: 327 ---EWKLATVVRQRF 338
+W L + RQ F
Sbjct: 308 RDLDWVLKQMARQGF 322
>gi|15235288|ref|NP_193742.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75098720|sp|O49436.1|PP327_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g20090; AltName: Full=Protein EMBRYO DEFECTIVE 1025
gi|2827663|emb|CAA16617.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|7268804|emb|CAB79009.1| membrane-associated salt-inducible-like protein [Arabidopsis
thaliana]
gi|58013024|gb|AAW62965.1| embryo-defective 1025 [Arabidopsis thaliana]
gi|332658871|gb|AEE84271.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 660
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 5/231 (2%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALA 121
+PN SF +++ +D +E F + R Y Y L L + A+
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L GC P P I +L L ++ V ++ M G P+ T N L+ L
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDG-LCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L +A +L+ M S++C+P+ +Y +I + R+ DAV ++ M G
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME-ERGYHLN 361
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
Q + + + L + +A+ + + KGC Y V+V+G CRE
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGL--CRE 410
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 113/253 (44%), Gaps = 10/253 (3%)
Query: 80 KVIDEM-LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
K++D M L+ +P ++ Y+ L+ + L L A+++L+R + S C+P
Sbjct: 278 KLVDNMFLKGCVP------NEVTYNTLI-HGLCLKGKLDKAVSLLERMVSSKCIPNDVTY 330
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L + +++R + +V +L M+ GYH + + L+S L + EA + + M+
Sbjct: 331 GTLINGLVKQRRATDAVR-LLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C P++ YS+++ + K N+A E++ M+ + G +P +
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS-GCLPNAYTYSSLMKGFFKTGLC 448
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+AV++ + +++ GC Y V+++G A M G P +
Sbjct: 449 EEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508
Query: 319 VEGLAGVGEWKLA 331
++GL G+G A
Sbjct: 509 IKGLCGIGSMDAA 521
>gi|357466003|ref|XP_003603286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355492334|gb|AES73537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1246
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 52/213 (24%), Positives = 92/213 (43%), Gaps = 20/213 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A L RR ++ + ++L EMKSIG P+ T +
Sbjct: 219 ALKVYKRMISEGMKPSMKTYSALMVA-LGRRGDTRKIMNLLEEMKSIGLRPNIYTYTICI 277
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
+L ++ +A + K M C PD+ +Y+++I A+ A K + A E+ +M
Sbjct: 278 RALGRARRIDDAWGIFKEMDDEGCGPDVITYTVLIDALCAAGKLDKAKELYVKMRASSHS 337
Query: 233 ---VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
V + LM + G V L + W +E+ G Y +++E +
Sbjct: 338 PDRVTYITLMDKFGKV----GDLETVKRFWNEMEV------DGYAPDVVTYTILIEALCK 387
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ A + MT +G P + ++ GL
Sbjct: 388 SGDVDRAFDMLDVMTTKGIFPNLHTYNTMICGL 420
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 103/235 (43%), Gaps = 5/235 (2%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPK-IAYDYLLSYT 109
EL + A +PN F++ + + K I+++ + + +R R P I ++ ++S
Sbjct: 817 ELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNIIISAL 876
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP 169
++S + L AL + + P P L L + +S+ I EM G P
Sbjct: 877 VKS-NNLNKALDLYYELMSGDFSPTPCTYGPLIDGLL-KAGRSEQAMKIFEEMLDYGCGP 934
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ N L++ ++ A ++ K M PDL+SY+I++ + + ++AV+
Sbjct: 935 NSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRIDEAVQYF 994
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+E+ L GL P + L +R + +A+ + ++ +G Y ++
Sbjct: 995 EELKLT-GLDPDTVSYNFIINGLGKSRRLDEALSLFSEMKNRGISPDLYTYNALI 1048
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 62/120 (51%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++V EM+ GY PD T L+ +LC + A +L M++ P+L +Y+ +
Sbjct: 357 ETVKRFWNEMEVDGYAPDVVTYTILIEALCKSGDVDRAFDMLDVMTTKGIFPNLHTYNTM 416
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + AR+ ++A+E+++ M ++G+ P + + + KA++ E ++++G
Sbjct: 417 ICGLLKARRLDEALELLENME-SLGVKPTAFSYVLFIDYYGKSGDPAKAIDTFETMKKRG 475
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 75/172 (43%), Gaps = 10/172 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ I + L GC P I +L + + + + ++ +M G PD + LV
Sbjct: 920 AMKIFEEMLDYGCGPNSVIYNILINGF-GKSGEIDFACELFKKMVKEGIRPDLKSYTILV 978
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC ++ EA + + + PD SY+ +I + +R+ ++A+ + EM N G+
Sbjct: 979 ECLCITGRIDEAVQYFEELKLTGLDPDTVSYNFIINGLGKSRRLDEALSLFSEMK-NRGI 1037
Query: 239 MPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
P +++ + A + + AV+M E L+ G Y ++ G
Sbjct: 1038 SPDLYTYNALILHLGIAGKVDV----AVKMYEELQLVGLEPSVFTYNALIRG 1085
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 47/194 (24%), Positives = 87/194 (44%), Gaps = 10/194 (5%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
++ ++ +MKS G HP+ T N L+ + ++ + + M S C P+ +++I
Sbjct: 812 TEKALELFEDMKSAGTHPNNFTYNLLLDAHGKSKRINKLYDLYSEMRSRGCEPNAITHNI 871
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFL 268
+I A+ + N A+++ E+ ++ P G +I L+A R +A+++ E +
Sbjct: 872 IISALVKSNNLNKALDLYYEL-MSGDFSPTPCTYGPLID--GLLKAGRS-EQAMKIFEEM 927
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
GC Y +++ G + E A + M + G P +K +VE L G
Sbjct: 928 LDYGCGPNSVIYNILINGFGKSGEIDFACELFKKMVKEGIRPDLKSYTILVECLCITGRI 987
Query: 329 KLATVVRQRFAELK 342
A Q F ELK
Sbjct: 988 DEAV---QYFEELK 998
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 73/176 (41%), Gaps = 3/176 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DI ++ G PD T N L+ Q+ +A ++L M S C PD+ + +I +
Sbjct: 501 DIFNDLHKCGLSPDSVTYNMLMKCYSKAGQIDKATQLLSEMISKGCEPDVMIINSLINTL 560
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + + A +M + N+ L P + L ++ KA+E+ + GCP
Sbjct: 561 YKAGRVDAAWKMFGRLK-NLKLAPTVVTYNILLTGLGKEGKILKALELFGSMTESGCPPN 619
Query: 277 FQGYEVVVEGCLECREYI-LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +++ CL + + LA K MT P + ++ GL G A
Sbjct: 620 TITFNSLLD-CLSKNDAVDLALKMFCRMTMMNCNPDVLTYNTIIYGLIREGRIDYA 674
>gi|15222491|ref|NP_176550.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
gi|332195999|gb|AEE34120.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 257
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 139 LLLSSAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++S+A ++R C+ + ++ EM G P+ T N ++ S C + +A ++L+
Sbjct: 10 VVISTAIVDRLCKDGNHINAQNLFTEMHEKGIFPNVLTYNCMIDSFCHSGRWSDADQLLR 69
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + PD+ ++S +I A RK ++A E+ KEM L + P +
Sbjct: 70 HMIEKQINPDIVTFSALINAFVKERKVSEAEEIYKEM-LRWSIFPTTITYNSMIDGFCKQ 128
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ A M++ + KGC + ++ G + + + M RG +
Sbjct: 129 DRVDDAKRMLDSMASKGCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVTY 188
Query: 316 QKVVEGLAGVGEWKLA 331
++ G VG+ A
Sbjct: 189 TTLIHGFCQVGDLDAA 204
>gi|224138176|ref|XP_002326537.1| predicted protein [Populus trichocarpa]
gi|222833859|gb|EEE72336.1| predicted protein [Populus trichocarpa]
Length = 826
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 81/187 (43%), Gaps = 1/187 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++C ++V +L+EMK G + N +V + +E K L+ ++ C PD+
Sbjct: 287 KKCNFKAVDGLLVEMKERGVDVNVQVYNSIVDAQIKHGCKIEVGKTLRWITENGCEPDIT 346
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I K ++A E++ E + GL P + + + +A ++
Sbjct: 347 TYNTLISGSCRDGKVHEAEELL-EHAIKRGLSPNKLSYTPLIHVYCKQGKCLRAFDLFIG 405
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ KG P+ Y +V G + E +A M ERG +P V ++ GL G
Sbjct: 406 MTEKGHPLDLVAYGALVHGLVAAGEVDVALTVRDKMVERGVLPDANVYNVLMNGLCKKGR 465
Query: 328 WKLATVV 334
A ++
Sbjct: 466 LSAAKLL 472
>gi|357441365|ref|XP_003590960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480008|gb|AES61211.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 590
Score = 58.5 bits (140), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/238 (25%), Positives = 107/238 (44%), Gaps = 14/238 (5%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-V 134
+ +K++DEML LRP + Y+ +++ + L A L R ++GCV V
Sbjct: 233 DEAMKLLDEMLSR--GLRP---DRYTYNVVVNGMCKE-GMLDRAFEFLSRISKNGCVAGV 286
Query: 135 PQIRLLLSSAWLERRCQ--SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+LL E + + + ++D+L++ G P+ T + L+++LC ++ EA
Sbjct: 287 STYNILLRDLLNEGKWEYGEKLMSDMLVK----GCEPNPITYSTLITALCRDGKIDEAKN 342
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
VLK M PD SY +I A+ K + A+E + +M+ + G +P + A+L
Sbjct: 343 VLKVMKEKALAPDGYSYDPLISALCREGKVDLAIEFLDDMI-SGGHLPDILSYNSILASL 401
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
N +A+ + E L GCP Y + + I A ++ M G P
Sbjct: 402 CKNGNADEALNIFEKLGEVGCPPNAGSYNTLFGALWSSGDKIRALGMILEMLSNGIDP 459
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 77/164 (46%), Gaps = 4/164 (2%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ V + +L MK G+ PD T N L+ + C +L A +V+ + C P +
Sbjct: 157 CKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRVMDQLLKDNCKPTV 216
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+I+I A T ++A++++ EM L+ GL P + V + + +A E +
Sbjct: 217 ITYTILIEATITQGGIDEAMKLLDEM-LSRGLRPDRYTYNVVVNGMCKEGMLDRAFEFLS 275
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ + GC G Y +++ L ++ K + M +G P
Sbjct: 276 RISKNGCVAGVSTYNILLRDLLNEGKWEYGEKLMSDMLVKGCEP 319
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/126 (30%), Positives = 60/126 (47%), Gaps = 5/126 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I ++ GC P L + W ++LEM S G PD T N L
Sbjct: 410 ALNIFEKLGEVGCPPNAGSYNTLFGALW--SSGDKIRALGMILEMLSNGIDPDEITYNSL 467
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+S LC + +A ++L M +E C P + SY+ V+ + ++ DA+E++ MV N
Sbjct: 468 ISCLCRDGLVDQAIELLVDMFESEKCQPTVISYNTVLLGLCKVQRIIDAIEVLAAMV-NE 526
Query: 237 GLMPRQ 242
G +P +
Sbjct: 527 GCLPNE 532
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K ++++ ++ MV N G P + K+ +++ KA++++E LE+ G P F Y
Sbjct: 92 KYDESLYFLQHMV-NRGYKPDVILCTKLIKGFFNMKKIEKAIQVMEILEKHGKPDVF-AY 149
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
V+ G + A K + M +RGF P + ++ G G LA
Sbjct: 150 NAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLA 200
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 5/163 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD N ++S C D++ A+KVL M PD+ +Y+I+IG + + A+ +
Sbjct: 144 PDVFAYNAVISGFCKADRVDHASKVLDRMKKRGFEPDVVTYNILIGNFCGRGRLDLALRV 203
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M ++ L P + A + +A+++++ + +G Y VVV G
Sbjct: 204 MDQL-LKDNCKPTVITYTILIEATITQGGIDEAMKLLDEMLSRGLRPDRYTYNVVVNGM- 261
Query: 289 ECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
C+E +L A + + +++ G + + ++ L G+W+
Sbjct: 262 -CKEGMLDRAFEFLSRISKNGCVAGVSTYNILLRDLLNEGKWE 303
>gi|356498873|ref|XP_003518272.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 566
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 102/224 (45%), Gaps = 3/224 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ ++ L+++ Q L AL +L+ + G P + L + R+ +++ +
Sbjct: 312 VTFNILINFLCQK-GLLGKALNVLEMMPKHGHTPNSRSFNPLIQGFCNRKGIDRAIEHLE 370
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+ M S G +PD T N L+++LC ++ +A +L +SS C P L SY+ VI +
Sbjct: 371 I-MVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQLSSKGCSPSLISYNTVIDGLLKV 429
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
K AVE+++EM GL P V L ++ +A++ +L+ G
Sbjct: 430 GKAELAVELLEEMCYK-GLKPDLITCTSVVGGLSREGKVHEAIKFFHYLKGFGIKPNAFI 488
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
Y ++ G + ++ LA ++ M G P +++G+
Sbjct: 489 YNSIMMGLCKAQQTSLAIDFLVDMVANGCKPTEASYTTLIKGIT 532
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 116/271 (42%), Gaps = 48/271 (17%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD--- 157
YD +L +L L A+ +L R L+S C P ++ + ++ C+ V
Sbjct: 173 TYDAVLC-SLCDRGKLKQAMQVLDRQLQSKCYP----DVVTCTVLIDATCKESGVGQAMK 227
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM+ G PD T N L+ C +L EA LK + S C D+ S+++++ ++
Sbjct: 228 LFNEMRGKGCKPDVVTYNVLIKGFCKEGRLDEAIIFLKKLPSYGCQSDVISHNMILRSLC 287
Query: 218 TARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALR----------- 253
+ + DA++++ M L G P ++G++ K L
Sbjct: 288 SGGRWMDAMKLLATM-LRKGCFPSVVTFNILINFLCQKGLLGKALNVLEMMPKHGHTPNS 346
Query: 254 ----------ANRE-MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM- 301
NR+ + +A+E +E + +GC Y +++ C++ + V+
Sbjct: 347 RSFNPLIQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTAL--CKDGKVDDAVVIL 404
Query: 302 -GMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ +G P + V++GL VG+ +LA
Sbjct: 405 SQLSSKGCSPSLISYNTVIDGLLKVGKAELA 435
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 39/210 (18%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L LR GC P V +L++ +L ++ ++L M G+ P+ + N L
Sbjct: 295 AMKLLATMLRKGCFPSVVTFNILIN--FLCQKGLLGKALNVLEMMPKHGHTPNSRSFNPL 352
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C + A + L+ M S C PD+ +Y+I++ A+ K +DAV ++ +
Sbjct: 353 IQGFCNRKGIDRAIEHLEIMVSRGCYPDIVTYNILLTALCKDGKVDDAVVILSQ------ 406
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L KGC Y V++G L+ + LA
Sbjct: 407 ------------------------------LSSKGCSPSLISYNTVIDGLLKVGKAELAV 436
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + M +G P + VV GL+ G+
Sbjct: 437 ELLEEMCYKGLKPDLITCTSVVGGLSREGK 466
>gi|302756537|ref|XP_002961692.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
gi|300170351|gb|EFJ36952.1| hypothetical protein SELMODRAFT_76597 [Selaginella moellendorffii]
Length = 1056
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 121/282 (42%), Gaps = 13/282 (4%)
Query: 56 SFEEACQNPNPFSFLSNFPQNHRIKVIDE---MLESFIPLRPRSRPKIAYDYLLSYTLQS 112
+ E C+ PN ++ + ++ +DE +L + L R+ + Y ++ L+
Sbjct: 534 ALERGCR-PNVVTYSTLIDGLSKMAKMDEALQLLAKMVELGCRAN-TVTYSTVVDGLLK- 590
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
+ + A+ +L++ +GC+P L + +R+ ++V +L EM G+HP
Sbjct: 591 VGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVG-LLREMLEAGFHPSVV 649
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L LC + EA ++L M++ C P+ +YS ++ + A + +A+ ++M
Sbjct: 650 TYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDGLCKAGRVTEALGYFEKM 709
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE---RKGCPIGFQGYEVVVEGCLE 289
+ + P VI +A + + + E EFLE R G + +++ G +
Sbjct: 710 ARDEVVAPH---VIAYSALIDGLCKAGRIDEAYEFLERMIRAGRIPDVVTFSILINGLCD 766
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ GM ERG I ++ GE+ A
Sbjct: 767 AGRIDTGLELFCGMAERGCKADIYAYNAMINAYCLKGEFSAA 808
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 53/197 (26%), Positives = 87/197 (44%), Gaps = 6/197 (3%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
IDE + F + R +I+Y+ L++ + S AL +L+ + G P +
Sbjct: 840 IDEAVSYFHSIPEDCRDEISYNTLITSLVASRRS-EQALELLRAMVADGGSP-DACNYMT 897
Query: 142 SSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
L + + A +L EM+S G+ PD T ++S L QL A + M
Sbjct: 898 VMDGLFKAGSPEVAAKLLQEMRSRGHSPDLRTYTIMISGLSKAKQLPLACDYFEEMLRKN 957
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
PD YS +I A A K +DA ++++ + G+ P M + +L NR KA
Sbjct: 958 LKPDAIVYSSLIDAFCKADKVDDAWKLLR----SSGIEPTITMYSTMVDSLCKNRGTDKA 1013
Query: 262 VEMIEFLERKGCPIGFQ 278
+E+I ++ K C G
Sbjct: 1014 LEVIREMKSKNCEPGIH 1030
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 78/169 (46%), Gaps = 4/169 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A + +R L GC P V L+ L + + +L +M +G + T + +
Sbjct: 527 AHNVFKRALERGCRPNVVTYSTLIDG--LSKMAKMDEALQLLAKMVELGCRANTVTYSTV 584
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
V L + ++ +A VL+ M A C+PD +Y+ +I ++ +AV +++EM L G
Sbjct: 585 VDGLLKVGRMEDAVVVLRQMRDAGCLPDAVTYNTLIDGFFKRQRLREAVGLLREM-LEAG 643
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
P + L + +AVE+++++ +GC Y +V+G
Sbjct: 644 FHPSVVTYTTLCHGLCRSGRFDEAVEILDYMAARGCAPNAITYSSIVDG 692
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/174 (25%), Positives = 75/174 (43%), Gaps = 2/174 (1%)
Query: 159 LLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
LLE M G PD T N ++ LC ++++A V K C P++ +YS +I +S
Sbjct: 495 LLEFMIESGLSPDVITFNSVLDGLCKEQRILDAHNVFKRALERGCRPNVVTYSTLIDGLS 554
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K ++A++++ +MV +G V L M AV ++ + GC
Sbjct: 555 KMAKMDEALQLLAKMV-ELGCRANTVTYSTVVDGLLKVGRMEDAVVVLRQMRDAGCLPDA 613
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + + A + M E GF P + + GL G + A
Sbjct: 614 VTYNTLIDGFFKRQRLREAVGLLREMLEAGFHPSVVTYTTLCHGLCRSGRFDEA 667
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/154 (21%), Positives = 68/154 (44%), Gaps = 1/154 (0%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ LC ++ +A + P + +YS VI + + + ++++EM
Sbjct: 3 TYNVLINGLCKAGRVCDAFTAFRKAIQFGFRPTVVTYSTVIDGLCRDNEVDKGCKLLEEM 62
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G P + AL +A ++E + GCP + ++++G + E
Sbjct: 63 A-GRGCAPNAVTYNTLVNALLGQGRAKEAFSLLERMAANGCPPELITFGLIIKGLCKEGE 121
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + V M +RGF+P +++ ++ L +G
Sbjct: 122 IEAAFRVVDEMVDRGFVPDVEIHTVLLHALCELG 155
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 56/123 (45%), Gaps = 4/123 (3%)
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP 169
L LPLA + LR P ++ S+ ++ C++ V D ++S G P
Sbjct: 937 LSKAKQLPLACDYFEEMLRKNLKP----DAIVYSSLIDAFCKADKVDDAWKLLRSSGIEP 992
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ +V SLC +A +V++ M S C P + ++ + A + ++AV+++
Sbjct: 993 TITMYSTMVDSLCKNRGTDKALEVIREMKSKNCEPGIHIWTSLATAYVAEGRVDEAVKLV 1052
Query: 230 KEM 232
++
Sbjct: 1053 NDL 1055
>gi|297791089|ref|XP_002863429.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297309264|gb|EFH39688.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 83/186 (44%), Gaps = 5/186 (2%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C++ D I EM G PD T L+S LC ++ EA K+ M +C P
Sbjct: 167 CRNDGTVDAGLKIFHEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ +I + ++ ++A+ ++EM G+ P + L + +A+E+
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYVEEMK-GKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + +GC Y ++ G + ++ A + + M +G P + KV+ G V
Sbjct: 286 EMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAV 345
Query: 326 GEWKLA 331
+++ A
Sbjct: 346 SKFREA 351
>gi|224133408|ref|XP_002321560.1| predicted protein [Populus trichocarpa]
gi|222868556|gb|EEF05687.1| predicted protein [Populus trichocarpa]
Length = 491
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 76/157 (48%), Gaps = 5/157 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ I + + G VP I L L R + + + + MK G P+ T N ++
Sbjct: 329 AIVIFEEMVVKGYVP-NSITYNLVIRGLCHRGEMERAMEFMGRMKDDGCEPNVQTYNLVI 387
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND---AVEMMKEMVLN 235
C ++ +A + + M+S +C+P+L++Y+I+I AM +K++D A ++ EMV +
Sbjct: 388 RYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILISAMFVRKKSDDLLVAGNLLIEMV-D 446
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
G +PR+ +V L A E++ R G
Sbjct: 447 RGFVPRKFTFNRVLNGLLLTGNQGFAKEILRLQSRCG 483
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/312 (22%), Positives = 131/312 (41%), Gaps = 39/312 (12%)
Query: 48 QQIPELLGSFEEACQNPNP-----FSFLSNFPQ-NHRIKVIDEMLESFIPLRPRSRPKIA 101
Q P+L+ + + N P F+ LS+ P +H D ++ I R R P +
Sbjct: 64 QWTPQLVNTILKRLWNDGPKALQFFNLLSHHPSYSHHPSSYDHAID--ISARLRDSPSLR 121
Query: 102 YDYLLSYTLQS--LHPLPLALAILQRTLRSGCVPVPQIRLLLS-------------SAWL 146
L Y ++S L P P AI+ S P +++ LS + L
Sbjct: 122 S---LVYRMRSARLGPTPKTFAIIAERYASAGKPHRAVKVFLSMHQFGCFQDLQSFNTIL 178
Query: 147 ERRCQSQSV--ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
+ C+S+ V A L ++ + DC + N +V+ C I + +A ++LK M P
Sbjct: 179 DVLCKSKRVEMAYNLFKVFKGKFRADCVSYNVMVNGWCLIKRTNKALEMLKEMVKRGLTP 238
Query: 205 DLESYSIVIGAMSTARKTNDAVEM---MKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
+L SY+ ++ A + N+A + MK+ + ++ ++ A E+ +A
Sbjct: 239 NLTSYNTMLKGYFRAGQINEAWDFFLEMKKRDCEIDVITYTTVIHGFGVA----GEIKRA 294
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQKVV 319
++ + + +KG Y ++ + C++ + V+ M +G++P V+
Sbjct: 295 RKVFDTMVKKGVLPSVATYNAFIQ--VLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVI 352
Query: 320 EGLAGVGEWKLA 331
GL GE + A
Sbjct: 353 RGLCHRGEMERA 364
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 69/169 (40%), Gaps = 4/169 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T N + LC D + A + + M VP+ +Y++VI + + A
Sbjct: 305 GVLPSVATYNAFIQVLCKKDNVDNAIVIFEEMVVKGYVPNSITYNLVIRGLCHRGEMERA 364
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+E M M + G P V E+ KA+++ + + C Y +++
Sbjct: 365 MEFMGRMK-DDGCEPNVQTYNLVIRYFCDEGEIDKALDLFQKMTSGDCLPNLDTYNILIS 423
Query: 286 GCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++AG ++ M +RGF+P +V+ GL G A
Sbjct: 424 AMFVRKKSDDLLVAGNLLIEMVDRGFVPRKFTFNRVLNGLLLTGNQGFA 472
>gi|449456681|ref|XP_004146077.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 527
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A + + + S V + L SA L + + + V+DIL EM G PD T N
Sbjct: 307 LNFAFKLKEEMVTSNVKLVSAVYSTLISA-LFKHGRKEEVSDILREMGENGCKPDTVTYN 365
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ C + L A +V+ M C PD+ S++ +IG + K +
Sbjct: 366 AIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLD------------ 413
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
KA++++E + R+GCP Y ++ +G E +
Sbjct: 414 ------------------------KAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKE 449
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M +G++P + K+V+ L
Sbjct: 450 ATSILDEMIFKGYVPRNESINKLVDRL 476
>gi|224067108|ref|XP_002302359.1| predicted protein [Populus trichocarpa]
gi|222844085|gb|EEE81632.1| predicted protein [Populus trichocarpa]
Length = 375
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 96/218 (44%), Gaps = 12/218 (5%)
Query: 119 ALAILQRTLRSGCVPV-----PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A+ IL++ GC P P + ++R Q + M S G +PD T
Sbjct: 140 AIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEI------MVSRGCYPDIVT 193
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N ++++LC ++ A ++L +SS C P L +Y+ VI +S KT+ AVE++ EM
Sbjct: 194 YNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEM- 252
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
GL P + A L ++ +A++ +E G Y ++ G + ++
Sbjct: 253 RGKGLKPDVITYSSLIAGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQT 312
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M +G P ++EG+A G K A
Sbjct: 313 DRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEA 350
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 53/249 (21%), Positives = 105/249 (42%), Gaps = 41/249 (16%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNY 176
+ +L R L C P ++ + +E C V +L EM S G PD T N
Sbjct: 1 MEVLDRQLEKECYP----DVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNV 56
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV--- 233
LV+ +C +L EA K L M S P++ +++I++ +M + + DA +++ EMV
Sbjct: 57 LVNGMCKEGRLDEAIKFLNSMPSYGSQPNVITHNIILRSMCSTGRWMDAEKLLTEMVRKG 116
Query: 234 ---------LNMGLMPRQGMVIKVAAALR----------------------ANREMWKAV 262
+ + + R+G++ + L ++M +A+
Sbjct: 117 CSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAI 176
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ +E + +GC Y ++ + + A + + ++ +G P + V++GL
Sbjct: 177 QYLEIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGL 236
Query: 323 AGVGEWKLA 331
+ VG+ A
Sbjct: 237 SKVGKTDQA 245
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/170 (24%), Positives = 79/170 (46%), Gaps = 1/170 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G P T N L++ LC L A +L+ M + C P+ SY+ ++
Sbjct: 108 LLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFC 167
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K + A++ + E++++ G P + AL + ++ AVE++ L KGC
Sbjct: 168 KEKKMDRAIQYL-EIMVSRGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVL 226
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y V++G + + A + + M +G P + ++ GL+ G+
Sbjct: 227 ITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGK 276
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 23/89 (25%), Positives = 40/89 (44%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R + + +++ G P+ T N ++ LC Q A L M S C
Sbjct: 269 AGLSREGKVEEAIKFFHDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCK 328
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEM 232
P SY+I+I ++ +A+E++ E+
Sbjct: 329 PTEVSYTILIEGIANEGLAKEALELLNEL 357
>gi|62320494|dbj|BAD95034.1| hypothetical protein [Arabidopsis thaliana]
Length = 602
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 9/181 (4%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYH 168
+L +P A+ +++ + G Q + +A + C+ + D +L M+S +
Sbjct: 136 TLRNIPKAVRVMEILEKFG-----QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N ++ SLC+ +L A KVL + S C P + +Y+I+I A ++A+++
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M EM L+ GL P + + + +A EM+ LE KG Y +++ L
Sbjct: 251 MDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGSEPDVISYNILLRALL 309
Query: 289 E 289
Sbjct: 310 N 310
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 52 ELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLS 107
LL +E P+ +S+ ++ F + R+ V E LE+ I P I Y+ +L+
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLA 411
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
TL AL I + GC P + S+ W ++LEM S G
Sbjct: 412 -TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW--SSGDKIRALHMILEMMSNG 468
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++S LC + EA ++L M S E P + +Y+IV+ A + DA+
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528
Query: 227 EMMKEMVLNMGLMPRQ 242
+++ MV N G P +
Sbjct: 529 NVLESMVGN-GCRPNE 543
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M S P+ T + L+++LC ++ EA +LK M PD SY +I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+E ++ M+ + G +P V A L N + +A+E+ L GC
Sbjct: 380 REGRLDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y + + I A ++ M G P
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDP 471
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 71/328 (21%), Positives = 142/328 (43%), Gaps = 37/328 (11%)
Query: 25 LRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI-- 79
++ +LR + + VR + E+L F + P+ F++ ++ F + +RI
Sbjct: 131 IKGFFTLRNIPKAVR----------VMEILEKFGQ----PDVFAYNALINGFCKMNRIDD 176
Query: 80 --KVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VP 135
+V+D M + F P + Y+ ++ +L S L LAL +L + L C P V
Sbjct: 177 ATRVLDRMRSKDFSP------DTVTYNIMIG-SLCSRGKLDLALKVLNQLLSDNCQPTVI 229
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + LE ++ EM S G PD T N ++ +C + A ++++
Sbjct: 230 TYTILIEATMLEGGVDE--ALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ PD+ SY+I++ A+ K + ++M +M + P + L +
Sbjct: 288 NLELKGSEPDVISYNILLRALLNQGKWEEGEKLMTKM-FSEKCDPNVVTYSILITTLCRD 346
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIK 313
++ +A+ +++ ++ KG Y+ ++ CRE L A + + M G +P I
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF--CREGRLDVAIEFLETMISDGCLPDIV 404
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341
V+ L G+ A + + E+
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEV 432
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L++M+S +HP T N ++ C ++ +A VL+ M C P+ +Y+++I +
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Query: 217 STARKTNDAVEMMKEMV 233
A +A+E+ ++V
Sbjct: 554 GFAGYRAEAMELANDLV 570
>gi|449456671|ref|XP_004146072.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
gi|449503658|ref|XP_004162112.1| PREDICTED: pentatricopeptide repeat-containing protein At3g14580,
mitochondrial-like [Cucumis sativus]
Length = 411
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 83/190 (43%), Gaps = 6/190 (3%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++ + +G D N LV LC L A KVL C P++ ++S ++
Sbjct: 182 VHEVYMGAPKLGIEIDACCLNILVKGLCQSGNLDAALKVLDEFPQQRCRPNVRTFSTLLH 241
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A+E+ +M N G+ P + + LR + + +A+E++ ++ KGC
Sbjct: 242 GLCENGELGRALELFCKME-NEGVCPDTITFNILISGLRKKKRIEEAIELLGRMKLKGCY 300
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG-----EWK 329
Y+ V+ G L+ ++I A + M G P +K++ GL +W
Sbjct: 301 PNAGTYQEVLYGLLDTGKFIEARDCMHRMISEGMDPSFVSYKKLLSGLCKKKLTEDVDWV 360
Query: 330 LATVVRQRFA 339
L +V Q F
Sbjct: 361 LKQMVMQGFV 370
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 10/167 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
+KV+DE + R RP + L + L L AL + + G P
Sbjct: 218 LKVLDEFPQQ------RCRPNVRTFSTLLHGLCENGELGRALELFCKMENEGVCPDTITF 271
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L+S L ++ + + ++L MK G +P+ GT ++ L + +EA + M
Sbjct: 272 NILISG--LRKKKRIEEAIELLGRMKLKGCYPNAGTYQEVLYGLLDTGKFIEARDCMHRM 329
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
S P SY ++ + + T D ++K+MV+ G +P+ GM
Sbjct: 330 ISEGMDPSFVSYKKLLSGLCKKKLTEDVDWVLKQMVMQ-GFVPKVGM 375
>gi|449495714|ref|XP_004159923.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g39710-like [Cucumis sativus]
Length = 749
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L + L R+GC+P ++ + ++ C+ + + + +L M G +P+
Sbjct: 219 LEMGLXFFGEMERNGCLP----NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI 274
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ N +++ LC Q+ E +++L+ MS VPD +++ +I + A+ + EM
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V N GL P + ++ + +A+E ++ + +G + Y +++G +
Sbjct: 335 VKN-GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + + M E GF P I ++ G +G + A+ + Q E
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPV 134
N ++ +D+M + L P R Y L+ ++ Q L A I++ + +G P
Sbjct: 360 NRAMEFLDQMRDR--GLHPNGR---TYTTLIDGFSQQGF--LKQAYQIMKEMVENGFTPT 412
Query: 135 PQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
++ +A + C + + + +L EM G+ PD + + ++S C +L +A
Sbjct: 413 ----IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAF 468
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++ M + PD+ +YS +I + R+ + ++ +EM L++GL P + + A
Sbjct: 469 QLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM-LSLGLPPDEVTYTSLINA 527
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ KA+ + + + +KG Y V++ G
Sbjct: 528 YCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM G+ P T N L++ C + ++ +A+ +L+ M +PD+ SYS +I
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ A ++ EMV G+ P + L R + + ++ + + G P
Sbjct: 460 RNQELEKAFQLKVEMVAK-GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ C+E + A + M ++GF P I ++ G
Sbjct: 519 VTYTSLINAYCIE-GDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563
Score = 41.2 bits (95), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V D+ EM S+G PD T L+++ C L +A ++ M PD+ +Y+++I
Sbjct: 502 VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLIN 561
Query: 215 AMSTARKTNDAVEMM----------KEMVLNMGLMPRQGMVIKVAAALRAN----REMWK 260
+ +T +A ++ E+ N + + K A AL M +
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNE 621
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
A ++E + +KG + + Y V++ G + A M GF P+
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672
>gi|302760727|ref|XP_002963786.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
gi|300169054|gb|EFJ35657.1| hypothetical protein SELMODRAFT_79843 [Selaginella moellendorffii]
Length = 432
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ L++ Q L + ALA + G VP L+ +A + C+++ +AD
Sbjct: 168 VTYNTLMAALFQ-LGRVDEALATFTQMTEEGYVPT----LVSFNAIITGLCRARRLADAL 222
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ EM +HP+ T + ++ LC DQL EA ++L M S C PDL +Y+ ++
Sbjct: 223 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 282
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
S A + + A+ +++ MV + G +P
Sbjct: 283 SAAGRLDSALGLLRRMV-SQGCIP 305
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ E + + PD T N L+++L + ++ EA M+ VP L S++ +I +
Sbjct: 154 VITEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 213
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
AR+ DA+E+ EM+ + P V L + ++ +A ++++ + +GC
Sbjct: 214 RARRLADALEVFNEMI-DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDL 272
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +V G A + M +G IP + V++ L VG
Sbjct: 273 VAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVG 321
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
RP + L + L AL +L+R + GC+P ++ + +++ C+ V
Sbjct: 269 RPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP----DVVTYTVVIDKLCKVGRVD 324
Query: 157 D---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
D I E+ + P+ T + L+ C ++ E KV++ M+ C P++ +Y+ +I
Sbjct: 325 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---CRPNVVTYNTMI 381
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+S + +A M +EM G +P R R + +A+ MI+
Sbjct: 382 WGLSMVDRNEEAYGMFREMS-ECGFVPDA----------RTYRGLKRALRMID 423
>gi|302786208|ref|XP_002974875.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
gi|300157770|gb|EFJ24395.1| hypothetical protein SELMODRAFT_150113 [Selaginella moellendorffii]
Length = 382
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 75/144 (52%), Gaps = 9/144 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ L++ Q L + ALA + G VP L+ +A + C+++ +AD
Sbjct: 118 VTYNTLMAALFQ-LGRVDEALATFTQMTEEGYVPT----LVSFNAIITGLCRARRLADAL 172
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ EM +HP+ T + ++ LC DQL EA ++L M S C PDL +Y+ ++
Sbjct: 173 EVFNEMIDRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGF 232
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
S A + + A+ +++ MV + G +P
Sbjct: 233 SAAGRLDSALGLLRRMV-SQGCIP 255
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 76/169 (44%), Gaps = 1/169 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ E + + PD T N L+++L + ++ EA M+ VP L S++ +I +
Sbjct: 104 VIAEARKRDFAPDVVTYNTLMAALFQLGRVDEALATFTQMTEEGYVPTLVSFNAIITGLC 163
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
AR+ DA+E+ EM+ + P V L + ++ +A ++++ + +GC
Sbjct: 164 RARRLADALEVFNEMI-DRDFHPNLVTYSVVIDGLCKSDQLDEAQQLLDRMVSEGCRPDL 222
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +V G A + M +G IP + V++ L VG
Sbjct: 223 VAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIPDVVTYTVVIDKLCKVG 271
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 77/173 (44%), Gaps = 21/173 (12%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
RP + L + L AL +L+R + GC+P ++ + +++ C+ V
Sbjct: 219 RPDLVAYTPLVLGFSAAGRLDSALGLLRRMVSQGCIP----DVVTYTVVIDKLCKVGRVD 274
Query: 157 D---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
D I E+ + P+ T + L+ C ++ E KV++ M+ C P++ +Y+ +I
Sbjct: 275 DAHEIFRELVANKCSPNVVTYSALIGGYCRASRVDEGGKVMREMA---CRPNVVTYNTMI 331
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+S + +A M +EM G +P R R + +A+ MI+
Sbjct: 332 WGLSMVDRNEEAYGMFREMS-ECGFVPDA----------RTYRGLKRALRMID 373
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 3/167 (1%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N LV LC D+L A V+ + PD+ +Y+ ++ A+ + ++A
Sbjct: 77 GCRPNAFTYNALVDGLCKQDRLDAARAVIAEARKRDFAPDVVTYNTLMAALFQLGRVDEA 136
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVV 284
+ +M G +P + L R + A+E+ E ++R P Y VV+
Sbjct: 137 LATFTQMT-EEGYVPTLVSFNAIITGLCRARRLADALEVFNEMIDRDFHP-NLVTYSVVI 194
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+G + + A + + M G P + +V G + G A
Sbjct: 195 DGLCKSDQLDEAQQLLDRMVSEGCRPDLVAYTPLVLGFSAAGRLDSA 241
>gi|255581786|ref|XP_002531694.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528670|gb|EEF30685.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 821
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 75/174 (43%), Gaps = 8/174 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L A + R ++ GC P + S + C + D+L EM G P
Sbjct: 248 LDKAFEVFDRMVKDGCNP----NSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGIEPTVY 303
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +SSLC I ++ +A +++ M C P +++Y+ +I + A K A+ M +M
Sbjct: 304 TYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELAIGMYHKM 363
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
L GL+P + L A+++ +++E G Q Y +++G
Sbjct: 364 -LKEGLVPNTVTYNALINELCTEGRFGIALKIFDWMEGHGTLANAQTYNQIIKG 416
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 62/165 (37%), Gaps = 1/165 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M G P T N L+ L A + L M + C PD +Y +I
Sbjct: 429 VFNKMLKDGPSPTVVTYNTLIVENLKRGYLNNATRFLYMMKESNCEPDERTYCELISGFC 488
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + A EM L G+ P Q + ++ A+ + E +E GC
Sbjct: 489 KGGKLDSATSFFYEM-LKCGISPNQWTYTAMIDGYCKEGKIDVALSLFERMEENGCSASI 547
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ Y ++ G + + A K MTE+G P ++ GL
Sbjct: 548 ETYNAIISGLSKGNRFSEAEKFCAKMTEQGLQPNTITYTSLINGL 592
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%), Gaps = 1/178 (0%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
S ++ ++ S G P T N +++ LC ++ EA V + + PD +Y+ +I
Sbjct: 180 SAQNVYAQIFSSGVKPSLLTFNTMINILCKKGKVQEAVLVFNKIFQFDLCPDAFTYTSLI 239
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
RK + A E+ MV + G P + L + +A++M+E + KG
Sbjct: 240 LGHCRNRKLDKAFEVFDRMVKD-GCNPNSVTYSTLINGLCNEGRIGEAMDMLEEMTEKGI 298
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V + + A V M ++G P ++ ++ GL G+ +LA
Sbjct: 299 EPTVYTYTVPISSLCDIGRVDDAINLVRSMGKKGCSPSVQTYTAIISGLFRAGKMELA 356
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 85/210 (40%), Gaps = 6/210 (2%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
LA I + C+P ++ + CQ V D + G P T + L
Sbjct: 600 LAFKIFHEMEKKNCLPNAHTY----TSLIYGLCQEGKV-DAAERLTENGCEPTIDTYSTL 654
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
VS LC + EA+++++ M P +E Y ++ A + K + A+E+ M + G
Sbjct: 655 VSGLCREGRSNEASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVDCALEIFNLMAVK-G 713
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + + AL +A+ + + L +K + V+V+G L+ + L
Sbjct: 714 FQPHLFIYKVLICALCGVSRAEEALNIFQSLLKKQWNSDLIVWTVLVDGLLQEGDSDLCM 773
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K + M R P + + L+ VG+
Sbjct: 774 KFLYLMESRNCTPSLHTYIILARELSKVGK 803
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 92/222 (41%), Gaps = 8/222 (3%)
Query: 116 LPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
+ +AL++ +R +GC + ++S L + + +M G P+ T
Sbjct: 528 IDVALSLFERMEENGCSASIETYNAIISG--LSKGNRFSEAEKFCAKMTEQGLQPNTITY 585
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++ LC A K+ M C+P+ +Y+ +I + K DA E + E
Sbjct: 586 TSLINGLCKNTATNLAFKIFHEMEKKNCLPNAHTYTSLIYGLCQEGKV-DAAERLTENGC 644
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ +V + R+N +A +++E ++ KG + Y ++ + +
Sbjct: 645 EPTIDTYSTLVSGLCREGRSN----EASQLVENMKEKGLSPSMEIYCSLLVAHCKSLKVD 700
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
A + M +GF P++ + + ++ L GV + A + Q
Sbjct: 701 CALEIFNLMAVKGFQPHLFIYKVLICALCGVSRAEEALNIFQ 742
>gi|413924821|gb|AFW64753.1| hypothetical protein ZEAMMB73_344298 [Zea mays]
Length = 698
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 3/209 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L+ +R G P Q+ R ++ +D+L+EM G+ PD T L+
Sbjct: 240 ALKLLREAIRRGLEP-NQLSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALI 298
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L Q+ +A V + M+ + +PD Y+++I + R + A +++EM L +
Sbjct: 299 HGLVVSGQVNDALIVREKMAERQVMPDANIYNVLISGLCKKRMLSAAKNLLEEM-LEQKV 357
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + + ++ A ++ EF+E K CP Y V+++G + A
Sbjct: 358 QPDKFIYTTLIDGFVRSDKLSDARKIFEFMEEKACP-DIVAYNVMIKGYCKFGMMKEAVT 416
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ M + G IP +V+G A G+
Sbjct: 417 CMSSMRKAGCIPDEFTYTTLVDGYAKKGD 445
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 40/196 (20%), Positives = 78/196 (39%), Gaps = 36/196 (18%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL R+ V +L EM++ G P+ N ++++LC +A+ +L M + P
Sbjct: 160 WLGRKGDLTKVESLLGEMRARGLSPNVQIYNTVINALCKCRSASQASDMLNQMVKSRFNP 219
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ +++ +I +A+++++E + GL P Q
Sbjct: 220 DVVTFNTMIAGFCREGDVREALKLLREAI-RRGLEPNQ---------------------- 256
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
Y ++ G E ++A ++ M RG P + ++ GL
Sbjct: 257 -------------LSYTPLIHGFCVRGEAMVASDLLVEMMGRGHTPDMITLGALIHGLVV 303
Query: 325 VGEWKLATVVRQRFAE 340
G+ A +VR++ AE
Sbjct: 304 SGQVNDALIVREKMAE 319
>gi|302767038|ref|XP_002966939.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
gi|300164930|gb|EFJ31538.1| hypothetical protein SELMODRAFT_30641 [Selaginella moellendorffii]
Length = 506
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 49/189 (25%), Positives = 85/189 (44%), Gaps = 8/189 (4%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL-KGMSSAECVPDLESY 209
++ V +IL EM+S+G D T + ++ SLC +V+ AKVL + M S CVPD Y
Sbjct: 162 RNNDVYEILREMESVGLEADKDTYSLIIHSLCK-SGMVDKAKVLVERMISRNCVPDARIY 220
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
VI +S + ++AVE+ KE ++ +V+ A R + + +++
Sbjct: 221 DPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKA----RRLKRGIKVFTR 276
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ R G Y ++ EG + A K + M + G +P ++ GL
Sbjct: 277 MARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDAVTFNSLINGLVEDNR 336
Query: 328 WKLATVVRQ 336
+ A + Q
Sbjct: 337 YHRAVTLIQ 345
Score = 38.1 bits (87), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 88/234 (37%), Gaps = 38/234 (16%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
VP L++ R ++ ++L +M G N + LC + A +
Sbjct: 74 VPATYLIIRFKACHERGNLRATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEF 133
Query: 194 LK-GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL-------------M 239
+ +S + +YSI++ A++ A++ ND E+++EM ++GL +
Sbjct: 134 FREAKNSFSLRASVSTYSILVAALTAAKRNNDVYEILREME-SVGLEADKDTYSLIIHSL 192
Query: 240 PRQGMVIK----------------------VAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ GMV K V L + +AVE+ + + K C
Sbjct: 193 CKSGMVDKAKVLVERMISRNCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCT-SV 251
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +V G L+ R K M G P I + EGL+ G W+ A
Sbjct: 252 VTYNSLVLGFLKARRLKRGIKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFA 305
>gi|302758166|ref|XP_002962506.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
gi|300169367|gb|EFJ35969.1| hypothetical protein SELMODRAFT_450632 [Selaginella moellendorffii]
Length = 807
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 50/175 (28%), Positives = 78/175 (44%), Gaps = 10/175 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGA 215
++L EMKS + PD T + L++ LC +L EA +L + + +C P++ SY+ +I
Sbjct: 313 ELLEEMKSNDFVPDIFTYDILIAGLCRAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDG 372
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE----RK 271
S A + NDA ++ EMV G P V+ + +R +A E +LE +K
Sbjct: 373 FSKAARVNDAYQLFLEMV-TAGQHPD---VVTYSTLIRGLCNAGRASEAHSYLEEMVGKK 428
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
P Y V+ G E A M G P + V ++ GL G
Sbjct: 429 ILP-KVPVYSSVISGLCRAGELDAASTVFDSMVANGCQPNLAVYNSLIYGLCKTG 482
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 77/181 (42%), Gaps = 8/181 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +MK GY D T N L+ C + ++ A ++L+ M S + VPD+ +Y I+I +
Sbjct: 279 LLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFVPDIFTYDILIAGLC 338
Query: 218 TARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A++ ++A +++ + P ++ + A R N +EM+ G
Sbjct: 339 RAKRLSEARDLLGTLRNEDDCTPNVVSYNTLIDGFSKAARVNDAYQLFLEMVT----AGQ 394
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Y ++ G A + M + +P + V V+ GL GE A+
Sbjct: 395 HPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLCRAGELDAAST 454
Query: 334 V 334
V
Sbjct: 455 V 455
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 99/228 (43%), Gaps = 7/228 (3%)
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIG 166
+ SL L A +L+ L +G P + +E C+ ++A+ +L +M G
Sbjct: 545 IASLRCLEQAQRVLRVVLATGNSPTA----FFYATVIESLCKENNLAEARQLLEDMIGAG 600
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T + LV ++C D+ V A L+ M P + +YS ++ A+ A K ++A
Sbjct: 601 IKPDGSTVDALVGAMCRQDKAVVAMAFLEEMVRLGSKPSVGTYSTLLNALFKAGKPSEAH 660
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+++ ++ + P + + + AA ++ +A +++ L+ K Y +++G
Sbjct: 661 VVLRRLISHTSCFPDELWYVGLIAAYSNQDQVEEARNVLQELKSKWGIQSIVAYNTLLKG 720
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
R + + + M F+ +++G +G+ A V
Sbjct: 721 LFRTRNLQMVYELLREMKRNEFVVNEATFNILIQGFCRLGQTDRAVRV 768
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 57/131 (43%), Gaps = 2/131 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ LEM + G HPD T + L+ LC + EA L+ M + +P + YS VI +
Sbjct: 385 LFLEMVTAGQHPDVVTYSTLIRGLCNAGRASEAHSYLEEMVGKKILPKVPVYSSVISGLC 444
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIG 276
A + + A + MV N G P + + L + A ++ + +GC P G
Sbjct: 445 RAGELDAASTVFDSMVAN-GCQPNLAVYNSLIYGLCKTGRLCDAKLRVKEMTERGCSPDG 503
Query: 277 FQGYEVVVEGC 287
++V C
Sbjct: 504 VTYGTLIVGLC 514
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 73/193 (37%), Gaps = 36/193 (18%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC------------------ 202
EM G P TC +L+++LC L A + + MSS C
Sbjct: 150 EMVDRGLRPVVLTCKFLLNALCKSGNLELALRYFEKMSSIPCAATWTILIDGLFRAIRVD 209
Query: 203 -------------VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
+P+ +Y++VI + A K +A +++EM + P V
Sbjct: 210 EACYYFEEMKHTAIPNNWTYTVVINGLVKAGKVAEAERVLQEMPV-----PTLANYTSVI 264
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+M KA ++E ++RKG Y ++ G +E A + + M F+
Sbjct: 265 GGHCKAGDMGKAYHLLEDMKRKGYQGDNLTYNTLIHGHCRLQEIDRAYELLEEMKSNDFV 324
Query: 310 PYIKVRQKVVEGL 322
P I ++ GL
Sbjct: 325 PDIFTYDILIAGL 337
>gi|297837161|ref|XP_002886462.1| binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297332303|gb|EFH62721.1| binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 550
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 94/204 (46%), Gaps = 7/204 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSIG---YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+++ V D L K IG P+ T LV+ LC + +AA++L+ M
Sbjct: 194 NAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTYTALVNGLCNSGRWNDAARLLRDMIK 253
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ P++ +YS ++ A K +A E+ +EMV M + P + L + +
Sbjct: 254 RKITPNVITYSALLDAFVKNGKVLEAKEIFEEMV-RMSIDPDIVTYSSLINGLCLHDRID 312
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y ++ G + + K M++RG + ++
Sbjct: 313 EANQMFDLMVSKGCFPDVVSYNTLINGFCKAKRVEDGMKLFRKMSQRGLVNNTVTYNTLI 372
Query: 320 EGLAGVGEWKLATVVRQRFAELKS 343
+G VG+ A ++ F+++ S
Sbjct: 373 QGFFQVGDVDKA---QEFFSQMDS 393
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 42/75 (56%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M +GY PD T LV+ C +++ +A ++ M PD+ +Y+ +I ++
Sbjct: 142 VLGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYRPDIVAYNAIIDSLC 201
Query: 218 TARKTNDAVEMMKEM 232
R+ NDA++ KE+
Sbjct: 202 KTRRVNDALDFFKEI 216
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G PD T N L+ LC L +A + + M +E D+ +Y+ VI M
Sbjct: 390 QMDSFGVSPDIWTYNILLGGLCDNGLLEKALVIFEDMQKSEMDLDIVTYTTVIQGMCKTG 449
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
K DA + + L GL P
Sbjct: 450 KVEDAWGLFCSLSLK-GLKP 468
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 34/167 (20%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G D T N +++ C Q+ A VL M PD + ++
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSVLGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV +G P + +L R + A++ + + RKG Y
Sbjct: 170 RVSDAVSLVDKMV-EIGYRPDIVAYNAIIDSLCKTRRVNDALDFFKEIGRKGIRPNVVTY 228
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + A + + M +R P + +++ G+
Sbjct: 229 TALVNGLCNSGRWNDAARLLRDMIKRKITPNVITYSALLDAFVKNGK 275
>gi|414586846|tpg|DAA37417.1| TPA: hypothetical protein ZEAMMB73_755201 [Zea mays]
Length = 612
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 4/235 (1%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165
S + L +P A A L +G P Q +L+ + R + S ++ EM
Sbjct: 214 SDLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRD--MIRSGKLASARNVFDEMLRR 271
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T N L+S +C L A + M+ A PD+ +Y I + + DA
Sbjct: 272 GVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 331
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+EM +EM GL P ++ + A ++ +E+ + +G Y +V
Sbjct: 332 MEMFEEMC-ERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVN 390
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
G R+ A V M + G P +++G GE A ++Q ++
Sbjct: 391 GFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSD 445
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ DI+ EM+ G PD T L+ C +L A ++ + MS D +Y+ +
Sbjct: 399 KAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 458
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S A ++ DA ++ EM + GL P V A N ++ + ++ ++ KG
Sbjct: 459 ISGLSKAGRSVDAERILCEM-MEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 517
Query: 273 CPIGFQGYEVVVEG 286
G Y VV+ G
Sbjct: 518 KNPGIVTYNVVMNG 531
>gi|414587959|tpg|DAA38530.1| TPA: hypothetical protein ZEAMMB73_367044 [Zea mays]
Length = 537
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 96/216 (44%), Gaps = 12/216 (5%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA L+ R GCVP + ++++ + ++ R ++ +L EM +G D T N L
Sbjct: 65 ALARLRGMARHGCVPDAVLYQIVIHALVVQGRVAEATM--LLDEMLLMGCAADVNTFNDL 122
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
V LC + ++ EAA+++ M + C+P +Y ++ + R+ ++A + +G
Sbjct: 123 VLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLCRTRQADEACTL-------LG 175
Query: 238 LMPRQGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+P +V+ V ++ + ++ E + KGCP Y +++ G + +
Sbjct: 176 RLPEVNVVMLNTVICGCLMEGKLARVTKLYEMMGSKGCPSDVHTYSILMHGLCKLGRFGS 235
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + M E P I ++ G W A
Sbjct: 236 GVRMLDKMEENSCAPNIMTYSTLLHSFCRNGMWDDA 271
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 56/124 (45%), Gaps = 1/124 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T + +LC + + +A L+GM+ CVPD Y IVI A+ + +A +
Sbjct: 44 PTTFTFGVVARALCRLGRAGDALARLRGMARHGCVPDAVLYQIVIHALVVQGRVAEATML 103
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM+L MG + L R + +A +++ + +GC Y +++G
Sbjct: 104 LDEMLL-MGCAADVNTFNDLVLRLCGLRRVREAARLVDRMMTQGCMPSAMTYGFLLQGLC 162
Query: 289 ECRE 292
R+
Sbjct: 163 RTRQ 166
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/131 (22%), Positives = 60/131 (45%), Gaps = 3/131 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G D T + L+ LC + + ++L M C P++ +YS ++ +
Sbjct: 208 MGSKGCPSDVHTYSILMHGLCKLGRFGSGVRMLDKMEENSCAPNIMTYSTLLHSFCRNGM 267
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+DA M+ +M+ M QG + AL + ++ +A +++ ++ +GC Y
Sbjct: 268 WDDARAMLDQMLAKGFSMNSQG-YNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYN 326
Query: 282 VVVEGCLECRE 292
+++ C+E
Sbjct: 327 GLIKAL--CKE 335
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 70/149 (46%), Gaps = 9/149 (6%)
Query: 98 PKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
P + Y +L + L L + +L + + C P ++ S L C++
Sbjct: 214 PSDVHTYSILMHGLCKLGRFGSGVRMLDKMEENSCAP----NIMTYSTLLHSFCRNGMWD 269
Query: 157 D---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
D +L +M + G+ + N ++ +LC +L +A ++++ M S C PD+ +Y+ +I
Sbjct: 270 DARAMLDQMLAKGFSMNSQGYNGIIYALCKDGKLDQATRLVQEMKSQGCKPDICTYNGLI 329
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
A+ + ++ +++EMV G+ P
Sbjct: 330 KALCKEGNVDWSMALLEEMVTK-GIKPNN 357
>gi|356551785|ref|XP_003544254.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g09900-like [Glycine max]
Length = 603
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/171 (26%), Positives = 81/171 (47%), Gaps = 12/171 (7%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G +PD T N L+++LC ++ +A ++LK +S PD+ +YSI+I + K
Sbjct: 421 MVSRGCYPDIVTYNILLAALCKDRKVDDAVEILKQLSFKGLKPDVITYSIIIDGLLKVGK 480
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
T+ A+E+++E GL P V + ++ +A+++ FLE G Y
Sbjct: 481 TDLALELLEE-ACTKGLKPNLITFTSVVGGISRKGKVHEAIKIFHFLEGLGIRPNAFAYN 539
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+++ G + ++ T RG P +V+G+ G K A+
Sbjct: 540 LIIMGLCKTQQ-----------TSRGCKPTEATYNILVKGITSEGXPKEAS 579
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 68/137 (49%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
I YD +L +L L + +L R L+ C P ++ + ++ C+ V
Sbjct: 226 INYDTILR-SLCDRCKLKQGMEVLDRQLQIKCYP----DVVTYTELIDAACKDSRVGQAM 280
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L+EM S P+ T N L+ +C +L E + LK + S PD+ SY+IV+ ++
Sbjct: 281 KLLIEMVSKECKPNVVTYNALIKGICNEGRLDEVIRFLKNLPSYGYQPDVISYTIVLHSL 340
Query: 217 STARKTNDAVEMMKEMV 233
S+ + DA++++ M+
Sbjct: 341 SSGGRWTDAMKLLASML 357
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 53/198 (26%), Positives = 86/198 (43%), Gaps = 43/198 (21%)
Query: 101 AYDY---LLSYTLQSLHPLPL------ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
+Y Y ++SYT+ LH L A+ +L L GC + ++ + + CQ
Sbjct: 323 SYGYQPDVISYTI-VLHSLSSGGRWTDAMKLLASMLCKGC----SLNVVTFNTLINFLCQ 377
Query: 152 SQSVADIL--LEM--------KSIGYHPDCGT-CNYLVSSLCAIDQLVEAAKVLKGMSSA 200
+ LEM SI Y+P G CN E + L+ M S
Sbjct: 378 KGLLGKAFNVLEMIXKHVCTPNSISYNPSIGGFCN-------------EKSXYLEIMVSR 424
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C PD+ +Y+I++ A+ RK +DAVE++K++ GL P VI + + ++ K
Sbjct: 425 GCYPDIVTYNILLAALCKDRKVDDAVEILKQLSFK-GLKPD---VITYSIIIDGLLKVGK 480
Query: 261 AVEMIEFLERKGCPIGFQ 278
+E LE + C G +
Sbjct: 481 TDLALELLE-EACTKGLK 497
>gi|359479583|ref|XP_002275680.2| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Vitis vinifera]
gi|297735515|emb|CBI17955.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + M+S G D + N L++ C ++VEA K+ + M E +P + +Y+ ++ +
Sbjct: 364 DLFVSMESKGIETDAVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGL 423
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K DA + EM ++ L P + L N + +A+E+ +LE
Sbjct: 424 FREGKVRDAWNLFGEMKVH-DLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPS 482
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Q + +++G + R+ +A + ++ G P + ++ GL G+ + A
Sbjct: 483 IQIFNCLIDGLCKARKIEIARELFNRLSHEGLEPNVITYTVMIHGLCKSGQLENA 537
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/178 (21%), Positives = 76/178 (42%), Gaps = 1/178 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + + ++ EMK P+ T N L+ LC + L EA ++ + + + P
Sbjct: 423 LFREGKVRDAWNLFGEMKVHDLTPESCTYNILLDGLCKNNHLSEAMELFHYLENHDFQPS 482
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
++ ++ +I + ARK A E+ + + GL P + L + ++ A ++
Sbjct: 483 IQIFNCLIDGLCKARKIEIARELFNRLS-HEGLEPNVITYTVMIHGLCKSGQLENAKDLF 541
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+E KGC + ++ G + E + + M E+ F P VV+ L+
Sbjct: 542 LGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTISIVVDLLS 599
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 39/190 (20%), Positives = 75/190 (39%), Gaps = 12/190 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ LEMK G PD + ++ +C + A + M P++ +++++I A+
Sbjct: 259 ELFLEMKGRGISPDVVAYSSIIHGMCHTGRWEGAKGLFNEMVDEGVHPNVVTFNVLIDAL 318
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A K +A ++K M+ G P + + A ++ +E KG
Sbjct: 319 CKAGKMEEANHLLKLMI-QRGESPDTFTYNTLIDGFCLEGRIDDARDLFVSMESKGIETD 377
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKLAT 332
Y V++ G + + A K M + +P + ++ GL G+ W L
Sbjct: 378 AVSYNVLINGYCKSGRMVEAKKLYREMMCKEIMPTVITYNTLLTGLFREGKVRDAWNL-- 435
Query: 333 VVRQRFAELK 342
F E+K
Sbjct: 436 -----FGEMK 440
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ D+ L M+ G P+ T N L+ C D++ + ++L+ M+ + PD + S
Sbjct: 533 QLENAKDLFLGMEEKGCAPNLVTFNTLMRGFCQNDEMQKVVELLQEMAEKDFSPDASTIS 592
Query: 211 IVIGAMSTARKTNDAVEMM 229
IV+ +S K + + ++
Sbjct: 593 IVVDLLSKDEKYREYLHLL 611
>gi|125604707|gb|EAZ43743.1| hypothetical protein OsJ_28367 [Oryza sativa Japonica Group]
Length = 812
Score = 58.2 bits (139), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)
Query: 95 RSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
+SRP Y+ +L + S + LALA+ R + +GC P +L ++ C+
Sbjct: 167 QSRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVL----MDGLCKQG 221
Query: 154 SVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
D L EM G P+ L+SSLC ++ EA ++L M C+PD +Y+
Sbjct: 222 MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYN 281
Query: 211 IVIGAMSTARKTNDAVE---MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + + N+A + M+++ +GL ++ + A R + M
Sbjct: 282 AFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM--- 338
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
LER P Y +++ GC E A + M ++GF+P V++ L G+
Sbjct: 339 LERNISP-DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397
Query: 328 WKLATVVR 335
+ A +R
Sbjct: 398 LERAHTLR 405
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-------- 169
A+ I GC P V L+ + E R + A +L +G +P
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE---ARMLFHKMEMGNNPSLFLRLTL 492
Query: 170 ------DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
D + LV +C Q+++A K+L+ + + VPD+ +Y+ +I + AR +
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552
Query: 224 DAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANRE 257
AV + KE+ L G+ P + G +I LRA+RE
Sbjct: 553 GAVRLFKELQLK-GISPDEITYGTLID--GLLRAHRE 586
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS V ++SI G PD T N L++ LC L A ++ K + PD
Sbjct: 511 CQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-I 265
+Y +I + A + NDA+ M+ + +L G P + + +L +++ +A+ + +
Sbjct: 571 ITYGTLIDGLLRAHRENDAM-MLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629
Query: 266 EFLERK 271
++L +K
Sbjct: 630 DYLPKK 635
>gi|254939549|ref|NP_001157212.1| pentatricopeptide repeat10 [Zea mays]
gi|218684531|gb|ACL01094.1| chloroplast pentatricopeptide repeat protein 10 [Zea mays]
gi|223948163|gb|ACN28165.1| unknown [Zea mays]
gi|413943497|gb|AFW76146.1| pentatricopeptide repeat10 [Zea mays]
Length = 786
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 65/291 (22%), Positives = 116/291 (39%), Gaps = 7/291 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + +I LL A P+ F+ + R ++DE + F L+ R +
Sbjct: 223 GRSWPRIVALLDEMRAAGVEPDGFTASTVIAACCRDGLVDEAVAFFEDLKARGHAPCVVT 282
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL AL +L ++GC P L+ + R + A L
Sbjct: 283 YNALLQ-VFGKAGNYTEALRVLGEMEQNGCQPDAVTYNELAGTY-ARAGFFEEAARCLDT 340
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ + ++ EA + M VP++ +Y++V+G + +
Sbjct: 341 MASKGLLPNAFTYNTVMTAYGNVGKVDEALALFDQMKKTGFVPNVNTYNLVLGMLGKKSR 400
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGY 280
+EM+ EM + G P + + A+ R M V ++E + G + Y
Sbjct: 401 FTVMLEMLGEMSRS-GCTPNR-VTWNTMLAVCGKRGMEDYVTRVLEGMRSCGVELSRDTY 458
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ C A K MT GF P I ++ L+ G+W A
Sbjct: 459 NTLIAAYGRCGSRTNAFKMYNEMTSAGFTPCITTYNALLNVLSRQGDWSTA 509
>gi|226493231|ref|NP_001140656.1| hypothetical protein [Zea mays]
gi|194700420|gb|ACF84294.1| unknown [Zea mays]
gi|414587025|tpg|DAA37596.1| TPA: hypothetical protein ZEAMMB73_567962 [Zea mays]
Length = 598
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 91/213 (42%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L L GC P +L A + R Q++ +++ M++ G P+ T N ++
Sbjct: 182 ALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQAL-ELIDFMRAEGCEPNNVTYNVII 240
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++C + +A ++L + S C P+ +Y+ V+ + + DA E++ EMV
Sbjct: 241 DAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMVRE-NC 299
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + L + K +E + + GC Y V+ G E A +
Sbjct: 300 PPNEATLNVIINTLCRKGLLQKVTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALE 359
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M G P I V++GL W+ A
Sbjct: 360 LLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDA 392
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 64/274 (23%), Positives = 116/274 (42%), Gaps = 7/274 (2%)
Query: 38 VRAAVDAKDYQQIPELLGSFE-EACQNPNPFSFLSNFPQNHRIKVIDEMLE--SFIPLRP 94
++AA + Y+Q EL+ E C+ PN ++ R +D+ E + +P R
Sbjct: 205 LQAACKGRGYRQALELIDFMRAEGCE-PNNVTYNVIIDAMCREGDVDQARELLNSLPSRG 263
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
+ Y+ +L S+ A IL +R C P + L + L R+ Q
Sbjct: 264 CKPNTVNYNTVLK-GFCSIERWVDADEILDEMVRENCPP-NEATLNVIINTLCRKGLLQK 321
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V L +M G + T N ++S +C + A ++L M S C PD+ +Y+ V+
Sbjct: 322 VTLYLEKMSKHGCTANVVTYNAVISGMCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLK 381
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +A + DA E+M +M N +P + + + +A E+ + + KGC
Sbjct: 382 GLCSADRWEDAEELMIKMSQN-DRLPDNSTFNTIISFWCQKGLILQAFEVFKQMPEKGCN 440
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
Y ++ G + + A + + M +GF
Sbjct: 441 PNSTTYSTIIGGLTKAGKMEQALELLNEMANKGF 474
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 70/318 (22%), Positives = 121/318 (38%), Gaps = 49/318 (15%)
Query: 46 DYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAY 102
D Q ELL S PN ++ L F R DE+L+ + R P A
Sbjct: 248 DVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWVDADEILDEMV--RENCPPNEAT 305
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DIL 159
++ TL L L++ + GC ++ +A + C+ +V ++L
Sbjct: 306 LNVIINTLCRKGLLQKVTLYLEKMSKHGCT----ANVVTYNAVISGMCEQGNVDSALELL 361
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQ--------------------------------- 186
M+S G PD T N ++ LC+ D+
Sbjct: 362 SNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLPDNSTFNTIISFWCQK 421
Query: 187 --LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+++A +V K M C P+ +YS +IG ++ A K A+E++ EM N G + M
Sbjct: 422 GLILQAFEVFKQMPEKGCNPNSTTYSTIIGGLTKAGKMEQALELLNEMA-NKGFNTDK-M 479
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304
+ +L ++ + V+++ L+ G Y V+ G + A + M
Sbjct: 480 YRVLTESLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTDYAIDVLADMV 539
Query: 305 ERGFIPYIKVRQKVVEGL 322
G +P ++EGL
Sbjct: 540 SCGCMPDESTYIILIEGL 557
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ +LC ++ +A VL GM C PD+ +Y+I++ A R A+E++ M
Sbjct: 167 NPLIHALCERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRA 226
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G P + A+ ++ +A E++ L +GC Y V++G ++
Sbjct: 227 E-GCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGFCSIERWV 285
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + + M P ++ L G + T+ ++ ++
Sbjct: 286 DADEILDEMVRENCPPNEATLNVIINTLCRKGLLQKVTLYLEKMSK 331
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 16/187 (8%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ VAD L+ + + G PD T N L+ + C +A +++ M + C P+
Sbjct: 174 CERGRVADALVVLDGMLCRGCAPDVVTYNILLQAACKGRGYRQALELIDFMRAEGCEPNN 233
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMW-KAV 262
+Y+++I AM + A E++ + + G P V+K ++ E W A
Sbjct: 234 VTYNVIIDAMCREGDVDQARELLNSLP-SRGCKPNTVNYNTVLKGFCSI----ERWVDAD 288
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQKVVE 320
E+++ + R+ CP V++ CR+ +L T+ M++ G + V+
Sbjct: 289 EILDEMVRENCPPNEATLNVIINTL--CRKGLLQKVTLYLEKMSKHGCTANVVTYNAVIS 346
Query: 321 GLAGVGE 327
G+ G
Sbjct: 347 GMCEQGN 353
>gi|115477950|ref|NP_001062570.1| Os09g0110200 [Oryza sativa Japonica Group]
gi|46806362|dbj|BAD17538.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|46806431|dbj|BAD17588.1| PPR protein-like protein [Oryza sativa Japonica Group]
gi|113630803|dbj|BAF24484.1| Os09g0110200 [Oryza sativa Japonica Group]
Length = 794
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)
Query: 95 RSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
+SRP Y+ +L + S + LALA+ R + +GC P +L ++ C+
Sbjct: 167 QSRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVL----MDGLCKQG 221
Query: 154 SVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
D L EM G P+ L+SSLC ++ EA ++L M C+PD +Y+
Sbjct: 222 MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYN 281
Query: 211 IVIGAMSTARKTNDAVE---MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + + N+A + M+++ +GL ++ + A R + M
Sbjct: 282 AFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM--- 338
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
LER P Y +++ GC E A + M ++GF+P V++ L G+
Sbjct: 339 LERNISP-DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397
Query: 328 WKLATVVR 335
+ A +R
Sbjct: 398 LERAHTLR 405
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-------- 169
A+ I GC P V L+ + E R + A +L +G +P
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE---ARMLFHKMEMGNNPSLFLRLTL 492
Query: 170 ------DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
D + LV +C Q+++A K+L+ + + VPD+ +Y+ +I + AR +
Sbjct: 493 GANQVCDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552
Query: 224 DAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANRE 257
AV + KE+ L G+ P + G +I LRA+RE
Sbjct: 553 GAVRLFKELQLK-GISPDEITYGTLID--GLLRAHRE 586
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS V ++SI G PD T N L++ LC L A ++ K + PD
Sbjct: 511 CQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-I 265
+Y +I + A + NDA+ M+ + +L G P + + +L +++ +A+ + +
Sbjct: 571 ITYGTLIDGLLRAHRENDAM-MLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629
Query: 266 EFLERK 271
++L +K
Sbjct: 630 DYLPKK 635
>gi|225439731|ref|XP_002272943.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic [Vitis vinifera]
Length = 772
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 81/176 (46%), Gaps = 1/176 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EMK+ G HPD T N L+ SLC+ +L EA +LK M S+ C ++ +Y+ +I
Sbjct: 442 ELFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEALSLLKEMESSGCSRNVVTYNTLIDGF 501
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++ +A E+ EM L G+ + L NR + +A ++++ + +G
Sbjct: 502 CKNKRIEEAEEIFDEMELQ-GISRNVVTYNTLIDGLCKNRRVEEAAQLMDQMLMEGLKPD 560
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++ + A V MT G P ++ GL+ G +LA+
Sbjct: 561 KFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTLILGLSKAGRVELAS 616
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 94/212 (44%), Gaps = 5/212 (2%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+LQ +GC L+L ++ + ++VA + + + G D T N+L++ L
Sbjct: 127 VLQEMKHTGCEIRRGTFLILIESYAKFELFDEAVAVVDIMEEEFGLKLDAFTYNFLLNVL 186
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
++L V M S PD+ +++I+I A+ A + A+ MM+EM + GL P
Sbjct: 187 VDGNKLKLVEIVNSRMVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMG-SYGLSPD 245
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR-EYILAGKT 299
+ + M A+ + E + GCP V+V G C E R E +L+
Sbjct: 246 EKTFTTLMQGFIEEGNMNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGRIEEVLS--F 303
Query: 300 VMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M+ GF P +V GL +G K A
Sbjct: 304 IDEMSNEGFRPDRFTFNSLVNGLCRIGHVKHA 335
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 46/176 (26%), Positives = 80/176 (45%), Gaps = 6/176 (3%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ A ++ +M G PD T N L++ C + +AA +++ M+S C PD +Y +
Sbjct: 543 EEAAQLMDQMLMEGLKPDKFTYNSLLTYFCRAGDIKKAADIVQTMTSNGCEPDSVTYGTL 602
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S A + A +++ + L ++ Q + A R R +AV + + KG
Sbjct: 603 ILGLSKAGRVELASRLLRTVQLKGMVLAPQTYNPVIKALFREKR-TSEAVRLFREMMEKG 661
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTV---MGMTERGFIPYIKVRQKVVEGLAGV 325
P Y+VV G C G+ V + MT++GF+P + EGL +
Sbjct: 662 DPPDAVTYKVVFRGL--CSGGGPIGEAVDFLVEMTDKGFLPDFSSFLMLAEGLCAL 715
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/213 (22%), Positives = 92/213 (43%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I ++ + +GC P + + + + + + V + EM + G+ PD T N LV
Sbjct: 265 ALRIREQMVAAGC-PSSNVTVNVLVHGYCKEGRIEEVLSFIDEMSNEGFRPDRFTFNSLV 323
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC I + A ++L M PD+ +Y+ +I + + +AVE++ +M+L
Sbjct: 324 NGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGEVEEAVEILNQMILR-DF 382
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + L ++ +A E+ L KG + +++G + LA +
Sbjct: 383 SPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTNNHRLAME 442
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M +G P +++ L G + A
Sbjct: 443 LFEEMKTKGCHPDEFTYNMLIDSLCSRGRLEEA 475
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 36/166 (21%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD T N L+ +LC Q+ A +++ M S PD ++++ ++
Sbjct: 202 MVSRGIKPDVTTFNILIKALCRAHQIRPAILMMEEMGSYGLSPDEKTFTTLMQGFIEEGN 261
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
N A+ + ++MV + + V + R + + + I+ + +G +
Sbjct: 262 MNGALRIREQMVAAGCPSSNVTVNVLVHGYCKEGR-IEEVLSFIDEMSNEGFRPDRFTFN 320
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G A + + M + GF P I ++ GL +GE
Sbjct: 321 SLVNGLCRIGHVKHALEILDVMLQEGFDPDIFTYNSLIFGLCKLGE 366
>gi|115466100|ref|NP_001056649.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|6983867|dbj|BAA90802.1| salt-inducible protein-like [Oryza sativa Japonica Group]
gi|113594689|dbj|BAF18563.1| Os06g0125300 [Oryza sativa Japonica Group]
gi|125553869|gb|EAY99474.1| hypothetical protein OsI_21443 [Oryza sativa Indica Group]
gi|125595884|gb|EAZ35664.1| hypothetical protein OsJ_19951 [Oryza sativa Japonica Group]
Length = 535
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/196 (23%), Positives = 79/196 (40%), Gaps = 35/196 (17%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD L+ C L +AA+++ M +A P+ +YS+VI A K +A
Sbjct: 258 GRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACCKEEKPIEA 317
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI---------- 275
+ M+EM L G +P + KV L + + +A ++ ++E+K P
Sbjct: 318 RDFMREM-LGAGYVPDTALGAKVVDVLCQDGKSEEAYQLWRWMEKKNVPPDNMVTSTLIY 376
Query: 276 --------------------GFQ----GYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
GF+ Y ++ G E E AG+ M ERG+ P
Sbjct: 377 WLCKNGMVREARNLFDELERGFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEPN 436
Query: 312 IKVRQKVVEGLAGVGE 327
+ +++GL G+
Sbjct: 437 AMTYEALIKGLCKTGK 452
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ +CN L+ L I L A KVL M PD+ +Y+ V+ A A ++
Sbjct: 191 PNLVSCNILLKGLVGIGDLDAALKVLDEMPGLGITPDVVTYTTVLSAYCGKGDIEGAQKL 250
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+++ + G P M + + A +++ +E Y VV+E C
Sbjct: 251 FDDIIAS-GRRPDVTMYTVLIDGYCQCGNLQDAARIMDEMEAARVQPNEVTYSVVIEACC 309
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + I A + M G++P + KVV+ L G+
Sbjct: 310 KEEKPIEARDFMREMLGAGYVPDTALGAKVVDVLCQDGK 348
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 42/89 (47%), Gaps = 1/89 (1%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL + + ++ E++ G+ P T N L+S LC ++L EA +V M P
Sbjct: 377 WLCKNGMVREARNLFDELER-GFKPSLLTYNSLISGLCENEELQEAGRVWDDMVERGYEP 435
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ +Y +I + K N+ + +EMV
Sbjct: 436 NAMTYEALIKGLCKTGKPNEGATVFEEMV 464
>gi|302763357|ref|XP_002965100.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
gi|300167333|gb|EFJ33938.1| hypothetical protein SELMODRAFT_83796 [Selaginella moellendorffii]
Length = 603
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/192 (25%), Positives = 86/192 (44%), Gaps = 1/192 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + V +L EMKS G + T ++S+LCA L +A +S +C P L +
Sbjct: 141 RDDFEVVNALLREMKSRGITSNGATHGVILSALCARRDLDKAVSYFNSVSPNKCEPTLFT 200
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y++++ + A K A ++ +EM+ G P + L + +A ++++ +
Sbjct: 201 YTVLVDGLCKAHKVERACDVFEEMI-RKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLM 259
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+G P Y +V G +C A KT+ M R P + +V G G+G+
Sbjct: 260 VARGPPPTAVAYTSIVAGLCKCGRIQEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGKV 319
Query: 329 KLATVVRQRFAE 340
+ A V + A+
Sbjct: 320 EKAFAVMEEMAD 331
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 58/292 (19%), Positives = 111/292 (38%), Gaps = 13/292 (4%)
Query: 49 QIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105
+ + LG F+ + PN SF L F +V++ +L + R + + +
Sbjct: 111 HLSDALGFFQSSISEPNVSSFNILLRGFAARDDFEVVNALLRE-MKSRGITSNGATHGVI 169
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEM 162
LS L + L A++ + C P L + ++ C++ V D+ EM
Sbjct: 170 LS-ALCARRDLDKAVSYFNSVSPNKCEPT----LFTYTVLVDGLCKAHKVERACDVFEEM 224
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
GY PD + L+ L ++ EA K++ M + P +Y+ ++ + +
Sbjct: 225 IRKGYKPDIIAYSSLIDGLSKAGRVDEARKLVDLMVARGPPPTAVAYTSIVAGLCKCGRI 284
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
+AV+ ++EM V + + + KA ++E + + C Y +
Sbjct: 285 QEAVKTIQEMRRRRLRPRVDTYSFIVTGYIGMGK-VEKAFAVMEEMADRDCAPDTISYTM 343
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+E A K M E+G P + +++ G AT V
Sbjct: 344 FIEALYSIGRREEAEKVFETMVEKGCKPDMHTYGIIIDNFCKEGSMAAATHV 395
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 70/148 (47%), Gaps = 6/148 (4%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTN 223
G P T N ++++LC + ++ EA ++L+ M E P + +YS++I +
Sbjct: 438 GILPSTVTYNTVINALCKLKKMDEALELLREMQRRKEELEPSIVTYSMIIHGLGKVGMEE 497
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
A +++ EM+ N G++P + L ++ +A+E++E + + G Y +
Sbjct: 498 RAFDLLAEMIDN-GVIPDCFTYTSLIQTLAGAGKVSRAMELLEEMLKAGIFPDDHTYGTL 556
Query: 284 VEGCLECREYILAGKTVMG-MTERGFIP 310
V+ + CR + A ++ M G P
Sbjct: 557 VQ--ILCRSDVDAAWDLLQEMMRNGHTP 582
>gi|302775252|ref|XP_002971043.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
gi|300161025|gb|EFJ27641.1| hypothetical protein SELMODRAFT_94769 [Selaginella moellendorffii]
Length = 457
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 126/269 (46%), Gaps = 13/269 (4%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIP--LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQR 125
+ LS + + +++ E+L+ I LRP + + Y +++ +S AL +L+
Sbjct: 87 TLLSGYCKAGKVEESRELLKEVISRGLRPDA---LMYTKVMASLCKSARLG-EALELLEE 142
Query: 126 TLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCA 183
+R+GC P + L+S E+ + +AD LL+ M + G D T N L+ LC
Sbjct: 143 MIRAGCCPTLITFNTLISGCCREKNLE---MADSLLQTMAASGVKADVVTYNTLMDGLCK 199
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+L EA ++L+ M ++ C PD+ +YS + + + K +A +++++M + P
Sbjct: 200 AGRLQEAEQLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQM-RDSDHDPNVV 258
Query: 244 MVIKVAAALRANREMWKAVEMIEFL-ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ L + ++ A+EM+E + GC + GY VV+G + A +
Sbjct: 259 TYNTILDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEA 318
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G P + +V GL G+ + A
Sbjct: 319 MARAGCRPDVVTYSSLVNGLCKAGKIEEA 347
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 89/183 (48%), Gaps = 3/183 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGA 215
+L M + G P+ + N L+ LC +++ EA ++++ M S PDL +YS ++
Sbjct: 32 LLETMAARGIQPNVVSYNGLLEGLCKLERWHEAEELVRDMISRGGRSTPDLVTYSTLLSG 91
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
A K ++ E++KE V++ GL P M KV A+L + + +A+E++E + R GC
Sbjct: 92 YCKAGKVEESRELLKE-VISRGLRPDALMYTKVMASLCKSARLGEALELLEEMIRAGCCP 150
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
+ ++ GC + +A + M G + +++GL G + A +
Sbjct: 151 TLITFNTLISGCCREKNLEMADSLLQTMAASGVKADVVTYNTLMDGLCKAGRLQEAEQLL 210
Query: 336 QRF 338
+R
Sbjct: 211 ERM 213
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 80/190 (42%), Gaps = 10/190 (5%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
L+ C+S + L M+ + CG + +V LC + + EA V++ M+ A
Sbjct: 264 LDGLCKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGRTQEARSVMEAMARAG 323
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
C PD+ +YS ++ + A K +AVE ++EM + G P + L + + +A
Sbjct: 324 CRPDVVTYSSLVNGLCKAGKIEEAVEAVREMAME-GCKPNAVTYCSLVHGLCSCGRLAEA 382
Query: 262 VEMIEFL-----ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
M+E + CP Y ++ G + A K M +G P
Sbjct: 383 ERMVEEMSSGGGGGDHCPPSVSTYNALIGGLCKAGRIDDALKFFQRMRSQGCDPDGVSYS 442
Query: 317 KVVEGLAGVG 326
+VEGLA G
Sbjct: 443 TIVEGLARSG 452
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 103/231 (44%), Gaps = 10/231 (4%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
I ++ L+S + + L +A ++LQ SG + ++ + ++ C++ Q
Sbjct: 153 ITFNTLISGCCREKN-LEMADSLLQTMAASG----VKADVVTYNTLMDGLCKAGRLQEAE 207
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L MK+ G PD + V LC +++ A +VL+ M ++ P++ +Y+ ++ +
Sbjct: 208 QLLERMKASGCAPDVVAYSSFVYGLCKSGKVLNAHQVLEQMRDSDHDPNVVTYNTILDGL 267
Query: 217 STARKTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ K + A+EMM++M + G + G V + R +A ++E + R GC
Sbjct: 268 CKSGKIDTALEMMEQMASSDGCGLNVVGYSTVVDGLCKLGR-TQEARSVMEAMARAGCRP 326
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +V G + + A + V M G P +V GL G
Sbjct: 327 DVVTYSSLVNGLCKAGKIEEAVEAVREMAMEGCKPNAVTYCSLVHGLCSCG 377
>gi|302780493|ref|XP_002972021.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
gi|300160320|gb|EFJ26938.1| hypothetical protein SELMODRAFT_412471 [Selaginella moellendorffii]
Length = 2052
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/193 (24%), Positives = 88/193 (45%), Gaps = 12/193 (6%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L M + PD T N L+++LC + +L +A +++ M + EC D+ +Y+ +I +
Sbjct: 1753 DLLHSMATTSCAPDIYTYNILINALCKVGRLEDAQGLVEMMQARECPTDIVTYNTLIHGL 1812
Query: 217 STARKTND------AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
RK N A + +EMV + G P V AL + +A ++++ +
Sbjct: 1813 --CRKGNGRFRVERAFRLFEEMV-DKGHTPTSVTYTVVIDALLRVKMDEQAQKVLDLMHE 1869
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
GC Y +++ + A + M RG IP + +V+G G+ +
Sbjct: 1870 NGCAFDLVTYNMLINRFAKAGMMDKAMDLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEE 1929
Query: 331 ATVVRQRFAELKS 343
A + FAE+K+
Sbjct: 1930 ANKL---FAEMKA 1939
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 4/83 (4%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ +EM + G PD T N +V C ++ EA K+ M + P+ +Y+ + A
Sbjct: 1897 DLFVEMPTRGCIPDVVTYNSIVDGFCKAGKVEEANKLFAEMKARGIFPNGRTYTSITDAC 1956
Query: 217 STARKTNDA----VEMMKEMVLN 235
A + DA VEM KE +++
Sbjct: 1957 LKAGRMQDAHAYLVEMRKEGLVD 1979
>gi|255547572|ref|XP_002514843.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545894|gb|EEF47397.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 594
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 70/150 (46%), Gaps = 10/150 (6%)
Query: 143 SAWLERRC------QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
S W++ C ++QS+ ++++E G P+ T N L+ C Q+ EA KV
Sbjct: 388 SIWVDVFCKKGMVSEAQSIINLMIER---GLRPNVVTYNSLMDGYCLHSQMDEARKVFDI 444
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + C PD+ SY+I+I + + ++A ++ EM + GL P + + L
Sbjct: 445 MVNKGCAPDVLSYNILIKGYCKSERIDEAKQLFDEMS-HKGLTPNSITHTTLISGLCQAG 503
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ A E+ + + GCP Y ++ G
Sbjct: 504 RPYAAKELFKKMGSHGCPPDLITYSTLLSG 533
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 71/305 (23%), Positives = 127/305 (41%), Gaps = 24/305 (7%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNH----RIKVIDEMLESFIPLR 93
VR + + L F + NPF ++ F Q R+K D ++ + +
Sbjct: 73 VRDKCKGGSFSNFDDALAYFNQMVH-MNPFPCITQFNQLLAALVRMKHYDSVVSIYRKME 131
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERR-C 150
Y +L L LH + L ++L + + G P + L++ +E R
Sbjct: 132 FFGVSCSVYTLTILINCLCHLHLVGLGFSVLGKIFKLGFKPSIITFNTLINGLCIEGRIV 191
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ D ++ S GY P T +V+ LC I + A +K M +C P++ SYS
Sbjct: 192 EAMEQLDYIM---SRGYQPTVYTHTMIVNGLCKIGKTSAAIVWMKKMVELDCEPEVVSYS 248
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWKAVEMI--E 266
I+I ++ R N+AV++ M ++G+ P V+ + + N WK ++ E
Sbjct: 249 IIIDSLCKNRLVNEAVDLFYHM-RSIGISPT---VVTYNSLIYGMCNSGQWKQASILFKE 304
Query: 267 FLERKGCPIGFQGYEVVVEGCLECRE-YILAGKTVMG-MTERGFIPYIKVRQKVVEGLAG 324
LE P + ++V+ C+E +L +V G M + P I ++ G+
Sbjct: 305 MLEWNMKP-DVVTFSILVDAL--CKEGVVLEALSVFGKMIQIAMEPDIVTYSSLIHGVCK 361
Query: 325 VGEWK 329
WK
Sbjct: 362 SSLWK 366
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 70/156 (44%), Gaps = 15/156 (9%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+I+ M+E LRP + Y+ L+ Y L S + A + + GC P +
Sbjct: 406 IINLMIER--GLRPNV---VTYNSLMDGYCLHS--QMDEARKVFDIMVNKGCAP----DV 454
Query: 140 LLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
L + ++ C+S+ + + + EM G P+ T L+S LC + A ++ K
Sbjct: 455 LSYNILIKGYCKSERIDEAKQLFDEMSHKGLTPNSITHTTLISGLCQAGRPYAAKELFKK 514
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
M S C PDL +YS ++ ++A+ + + +
Sbjct: 515 MGSHGCPPDLITYSTLLSGFCKHGHLDEALALFEAL 550
Score = 38.1 bits (87), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 41/210 (19%), Positives = 81/210 (38%), Gaps = 34/210 (16%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + + + EM PD T + LV +LC ++EA V M PD+ +YS
Sbjct: 294 QWKQASILFKEMLEWNMKPDVVTFSILVDALCKEGVVLEALSVFGKMIQIAMEPDIVTYS 353
Query: 211 IVIGAMSTARKTNDAVEMMKEMV------------LNMGLMPRQGMV--------IKVAA 250
+I + + ++ ++ EM+ + + + ++GMV + +
Sbjct: 354 SLIHGVCKSSLWKESSTLLNEMLSRNIRPDVVTFSIWVDVFCKKGMVSEAQSIINLMIER 413
Query: 251 ALRAN--------------REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
LR N +M +A ++ + + KGC Y ++++G + A
Sbjct: 414 GLRPNVVTYNSLMDGYCLHSQMDEARKVFDIMVNKGCAPDVLSYNILIKGYCKSERIDEA 473
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ M+ +G P ++ GL G
Sbjct: 474 KQLFDEMSHKGLTPNSITHTTLISGLCQAG 503
>gi|449438681|ref|XP_004137116.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Cucumis sativus]
Length = 749
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L + L R+GC+P ++ + ++ C+ + + + +L M G +P+
Sbjct: 219 LEMGLFFFGEMERNGCLP----NVVTYNTIIDAYCKLRKIGEAFKLLRLMALKGLNPNLI 274
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ N +++ LC Q+ E +++L+ MS VPD +++ +I + A+ + EM
Sbjct: 275 SYNVVINGLCREGQMKETSEILEEMSKRRYVPDRVTFNTLINGYCNVGNFHQALVLHAEM 334
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V N GL P + ++ + +A+E ++ + +G + Y +++G +
Sbjct: 335 VKN-GLSPNVVTYTTLINSMCKAGNLNRAMEFLDQMRDRGLHPNGRTYTTLIDGFSQQGF 393
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + + M E GF P I ++ G +G + A+ + Q E
Sbjct: 394 LKQAYQIMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIE 441
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/215 (21%), Positives = 99/215 (46%), Gaps = 16/215 (7%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPV 134
N ++ +D+M + L P R Y L+ ++ Q L A I++ + +G P
Sbjct: 360 NRAMEFLDQMRDR--GLHPNGR---TYTTLIDGFSQQGF--LKQAYQIMKEMVENGFTPT 412
Query: 135 PQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
++ +A + C + + + +L EM G+ PD + + ++S C +L +A
Sbjct: 413 ----IITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFCRNQELEKAF 468
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++ M + PD+ +YS +I + R+ + ++ +EM L++GL P + + A
Sbjct: 469 QLKVEMVAKGISPDVATYSSLIQGLCKQRRLGEVCDLFQEM-LSLGLPPDEVTYTSLINA 527
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ KA+ + + + +KG Y V++ G
Sbjct: 528 YCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLING 562
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM G+ P T N L++ C + ++ +A+ +L+ M +PD+ SYS +I
Sbjct: 400 IMKEMVENGFTPTIITYNALINGHCILGRMEDASGLLQEMIERGFIPDVVSYSTIISGFC 459
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ A ++ EMV G+ P + L R + + ++ + + G P
Sbjct: 460 RNQELEKAFQLKVEMVAK-GISPDVATYSSLIQGLCKQRRLGEVCDLFQEMLSLGLPPDE 518
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ C+E + A + M ++GF P I ++ G
Sbjct: 519 VTYTSLINAYCIE-GDLDKALRLHDEMIQKGFSPDIVTYNVLINGF 563
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 71/171 (41%), Gaps = 14/171 (8%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V D+ EM S+G PD T L+++ C L +A ++ M PD+ +Y+++I
Sbjct: 502 VCDLFQEMLSLGLPPDEVTYTSLINAYCIEGDLDKALRLHDEMIQKGFSPDIVTYNVLIN 561
Query: 215 AMSTARKTNDAVEMM----------KEMVLNMGLMPRQGMVIKVAAALRAN----REMWK 260
+ +T +A ++ E+ N + + K A AL M +
Sbjct: 562 GFNKQSRTKEAKRLLLKLLYEESVPNEITYNTLIDNCNNLEFKSALALMKGFCMKGLMNE 621
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
A ++E + +KG + + Y V++ G + A M GF P+
Sbjct: 622 ADRVLESMLQKGYKLNEEVYNVIIHGHSKVGNIEKAYNLYKEMLHSGFAPH 672
>gi|255569134|ref|XP_002525536.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223535215|gb|EEF36894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 430
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 87/195 (44%), Gaps = 3/195 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR ++ D++ E+ G +P T NY++SSL + +A +V + M +C PD
Sbjct: 236 RRGDFKAARDLMDEIGKEGCNPSAHTYNYIISSLLKNGKNADACEVFQEMQDNDCPPDAL 295
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
++ I I K ++A E +MV GL PR +++ KA + +
Sbjct: 296 TFEIFIYNSCNEGKLDNAFEFFDDMVAR-GLEPRLLTHAAFIKGFFNSQQYEKAYKYVVG 354
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ K Y ++ + + A + M ++G P+ V KV + L G
Sbjct: 355 SDDKYSSN--VNYSLLANLHQKQGNLVDAENILSEMIKKGLRPHFNVFMKVKKHLMKSGN 412
Query: 328 WKLATVVRQRFAELK 342
+LAT ++++F +L+
Sbjct: 413 EELATSLQKKFLQLE 427
>gi|262316879|emb|CAZ44328.1| restoring pentatricopeptide repeat protein homologue [Raphanus
sativus]
Length = 681
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 81/198 (40%), Gaps = 3/198 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ W + R ++ EM+ G PD T N ++ C+ + EA ++L+ M
Sbjct: 255 IIDGLWKDGR--HSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQRLLQEMLE 312
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ P++ +YS +I A RK +A E+ EM L G++P + +
Sbjct: 313 RKINPNVVTYSALINAYVKERKFFEAEELYDEM-LPRGIIPNTITYNSMIDGFCKQNRLD 371
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A M + KGC + +++G + + + MTE G + ++
Sbjct: 372 AAEHMFYVMATKGCSPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLI 431
Query: 320 EGLAGVGEWKLATVVRQR 337
G VG+ A + Q+
Sbjct: 432 HGFCLVGDLNAALDLSQQ 449
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 18/189 (9%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
++ +G+ PD T + L+ LC D++ EA + M C P++ +++ ++ +
Sbjct: 137 KITKLGFQPDVVTFSTLLHGLCVEDRVSEALDLFHQM----CRPNVVTFTTLMNGLCREG 192
Query: 221 KTNDAVEMMKEMVLNMGLMPRQ---GMVI----KVAAALRANREMWKAVEMIEFLERKGC 273
+ +AV ++ MV + GL P Q G ++ K+ + A + K EM +
Sbjct: 193 RVVEAVALLDRMVED-GLQPNQITYGTIVDGMCKIGDTVSALNLLRKMEEMSHI--KPNV 249
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
I Y +++G + + A M E+G P + +++G G W A
Sbjct: 250 VI----YSAIIDGLWKDGRHSDAHNLYTEMQEKGIFPDLFTYNCMIDGFCSSGRWSEAQR 305
Query: 334 VRQRFAELK 342
+ Q E K
Sbjct: 306 LLQEMLERK 314
Score = 45.1 bits (105), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P + + ++ C ++ + D +L EM G D T N L+ C +
Sbjct: 384 GCSP----DVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGD 439
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A + + M S+ PD+ + + ++ + K DA+EM K M
Sbjct: 440 LNAALDLSQQMISSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQ------------- 486
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+R G Q Y +++ G + +++ A + M R
Sbjct: 487 KSKMDLDASRPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHR 534
Query: 307 GFIPYIKVRQKVVEGL 322
G +P ++ GL
Sbjct: 535 GIVPNTITYSSMINGL 550
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 50/108 (46%), Gaps = 1/108 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S + PD T N LVS C ++ + ++ M V D +Y +I
Sbjct: 566 MGSKSFSPDVVTFNTLVSGYCKAGRVDDGLELFCEMGRRGIVADAITYITLIHGFRKVGN 625
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
N A+++ +EM+ + G+ P + + L + E+ +AV M+E L+
Sbjct: 626 INGALDIFQEMI-SSGVYPDTITIRSMLTVLWSKEELKRAVAMLEDLQ 672
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 41/191 (21%), Positives = 80/191 (41%), Gaps = 31/191 (16%)
Query: 63 NPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
+P+ F+F + + RI +++ EM E+ + + + + + L L +
Sbjct: 386 SPDVFTFNTLIDGYCGAKRIDDGTELLHEMTETGLVADTTTYNTLIHGFCLVGDLNA--- 442
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---------- 165
AL + Q+ + SG P ++ + L+ C + + D L K++
Sbjct: 443 ---ALDLSQQMISSGVCP----DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDAS 495
Query: 166 ----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
G PD T N L+S L + +EA ++ K M VP+ +YS +I + +
Sbjct: 496 RPFNGVEPDVQTYNILISGLINEGKFLEAEELYKEMPHRGIVPNTITYSSMINGLCKQSR 555
Query: 222 TNDAVEMMKEM 232
++A +M M
Sbjct: 556 LDEATQMFDSM 566
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/72 (26%), Positives = 37/72 (51%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P+ T + +++ LC +L EA ++ M S PD+ +++ ++ A
Sbjct: 530 EMPHRGIVPNTITYSSMINGLCKQSRLDEATQMFDSMGSKSFSPDVVTFNTLVSGYCKAG 589
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 590 RVDDGLELFCEM 601
>gi|125562731|gb|EAZ08111.1| hypothetical protein OsI_30376 [Oryza sativa Indica Group]
Length = 794
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 61/248 (24%), Positives = 107/248 (43%), Gaps = 16/248 (6%)
Query: 95 RSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
+SRP Y+ +L + S + LALA+ R + +GC P +L ++ C+
Sbjct: 167 QSRPTAFVYNTILKALVDS-GVILLALALYNRMVAAGCAPNRATYNVL----MDGLCKQG 221
Query: 154 SVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
D L EM G P+ L+SSLC ++ EA ++L M C+PD +Y+
Sbjct: 222 MAGDALKMFDEMLDRGIMPNVKIYTVLLSSLCNAGKIDEAVQLLGSMKDKGCLPDEVTYN 281
Query: 211 IVIGAMSTARKTNDAVE---MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + + N+A + M+++ +GL ++ + A R + M
Sbjct: 282 AFLSGLCKVGRVNEAFQRLVMLQDGGFALGLKGYSCLIDGLFQARRFDEGFGYYKTM--- 338
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
LER P Y +++ GC E A + M ++GF+P V++ L G+
Sbjct: 339 LERNISP-DVVLYTIMIRGCAEAGRIEDALSFLDVMKKKGFVPDTFCYNTVLKVLCDHGD 397
Query: 328 WKLATVVR 335
+ A +R
Sbjct: 398 LERAHTLR 405
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 42/157 (26%), Positives = 70/157 (44%), Gaps = 24/157 (15%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-------- 169
A+ I GC P V L+ + E R + A +L +G +P
Sbjct: 436 AMQIFDEMGEHGCDPTVMTYNALIDGFYREGRLEE---ARMLFHKMEMGNNPSLFLRLTL 492
Query: 170 ------DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
D + LV +C Q+++A K+L+ + + VPD+ +Y+ +I + AR +
Sbjct: 493 GANQVRDSESLRKLVHDMCQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLD 552
Query: 224 DAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANRE 257
AV + KE+ L G+ P + G +I LRA+RE
Sbjct: 553 GAVRLFKELQLK-GISPDEITYGTLID--GLLRAHRE 586
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 61/126 (48%), Gaps = 5/126 (3%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS V ++SI G PD T N L++ LC L A ++ K + PD
Sbjct: 511 CQSGQVLKAYKLLRSIIDSGVVPDVVTYNTLINGLCKARNLDGAVRLFKELQLKGISPDE 570
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-I 265
+Y +I + A + NDA+ M+ + +L G P + + +L +++ +A+ + +
Sbjct: 571 ITYGTLIDGLLRAHRENDAM-MLFQNILQSGSSPSLSIYNSMMRSLCRMKKLSQAINLWL 629
Query: 266 EFLERK 271
++L +K
Sbjct: 630 DYLPKK 635
>gi|414877568|tpg|DAA54699.1| TPA: hypothetical protein ZEAMMB73_211194, partial [Zea mays]
Length = 709
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 75/168 (44%), Gaps = 4/168 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ +G PD T N L+ LC ++VEA +++ M C PD SY V+ + ++
Sbjct: 224 MRRVGVDPDVVTYNCLIKGLCGARRIVEALEMIGSMLQNGCPPDKISYFTVMSFLCKEKR 283
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ +++ M + G+ P Q + L + +A+ + E K + GY
Sbjct: 284 VAEVWNLLERMRNDAGIFPDQITYNMLIHGLAKHGHADEALTFLRESEGKRFRVDQVGYS 343
Query: 282 VVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGE 327
+V CL R + K ++G M +G P + VV+G +GE
Sbjct: 344 AIVHSFCLNGR--MSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGE 389
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+V S C ++ EA +++ M S C PD+ +YS V+ + + A +MMK M N
Sbjct: 345 IVHSFCLNGRMSEAKEIIGEMISKGCRPDVVTYSAVVDGFCRIGELDQARKMMKHMYKN- 403
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFL----ERKGCPIGFQGYEVVVEGCLECRE 292
G P + A L ++ K+ E E L E P G Y V++ G +
Sbjct: 404 GCKPN---TVTHTALLNGLCKVGKSSEAWELLNKSEEEWWTPSGIT-YSVIMHGFRREGK 459
Query: 293 YILAGKTVMGMTERGFIP 310
+ + VM M ++GF P
Sbjct: 460 LVESCDVVMQMLQKGFFP 477
>gi|357167655|ref|XP_003581269.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Brachypodium distachyon]
Length = 587
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 89/213 (41%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L L GC P +L A + R Q++ I L M+ G P T N ++
Sbjct: 171 ALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDL-MRVEGCTPTNVTYNVIM 229
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+C + A ++L + S C P+ +Y+ V+ + TA + D E++ EM +
Sbjct: 230 DGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKGLRTAGRWEDVEELIAEM-FSENC 288
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + V ++L +A+ ++E + + C Y VV G E A
Sbjct: 289 PPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAVVSGLCEQGHVDGALY 348
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M G P I +V+GL W+ A
Sbjct: 349 LLSNMQTDGCKPNIFTYNILVKGLCNAERWEDA 381
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 8/177 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M++ G P+ T N LV LC ++ +A ++ MS +C+PD+ +++ +IG +
Sbjct: 349 LLSNMQTDGCKPNIFTYNILVKGLCNAERWEDAEDLMAKMSQTDCLPDILTFNTIIGFLC 408
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
T AVE+ K+M G P V L +M +++E++ + K GF
Sbjct: 409 QKGLTMQAVEVFKQMP-EKGCCPNSVTYSSVIEGLAKTGKMEQSLELLNEMGSK----GF 463
Query: 278 Q---GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ E E + + A + V + + G P + ++ GL G+ A
Sbjct: 464 NPEINYHLLAECLNEEDKLVEAIQMVHKLQDTGISPQAVLYNTILLGLCRNGKTDQA 520
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 99/235 (42%), Gaps = 10/235 (4%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVA 156
+ Y+ ++S + H + AL +L GC P + + ++ C ++
Sbjct: 328 VTYNAVVSGLCEQGH-VDGALYLLSNMQTDGCKP----NIFTYNILVKGLCNAERWEDAE 382
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D++ +M PD T N ++ LC ++A +V K M C P+ +YS VI +
Sbjct: 383 DLMAKMSQTDCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGL 442
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ K ++E++ EM + G P + +A L ++ +A++M+ L+ G
Sbjct: 443 AKTGKMEQSLELLNEMG-SKGFNPEINYHL-LAECLNEEDKLVEAIQMVHKLQDTGISPQ 500
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + A + M G +P +++GLA G K A
Sbjct: 501 AVLYNTILLGLCRNGKTDQAIDILSNMVSDGCMPDESTYSILIQGLAHEGYMKEA 555
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 3/178 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V +++ EM S P T + ++SSLC A ++L+ MS +C ++ +Y+ V
Sbjct: 274 EDVEELIAEMFSENCPPSEATLSVVISSLCQEGLFQRAIRLLEKMSKHDCTANIVTYNAV 333
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLERK 271
+ + + A+ ++ M + G P + L N E W+ A +++ + +
Sbjct: 334 VSGLCEQGHVDGALYLLSNMQTD-GCKPNIFTYNILVKGL-CNAERWEDAEDLMAKMSQT 391
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
C + ++ + + A + M E+G P V+EGLA G+ +
Sbjct: 392 DCLPDILTFNTIIGFLCQKGLTMQAVEVFKQMPEKGCCPNSVTYSSVIEGLAKTGKME 449
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/112 (25%), Positives = 50/112 (44%), Gaps = 1/112 (0%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+ +LC Q+ +A +L M C PD+ +Y+I++ A R A+E++ M +
Sbjct: 156 NPLMHALCVRGQVRDALVLLDNMLYRGCAPDVVTYNILLEAACKGRGYRQAMELIDLMRV 215
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G P + + ++ A E++ L GC Y V++G
Sbjct: 216 E-GCTPTNVTYNVIMDGMCREGDVDYARELLNSLPSYGCTPNTVNYNTVLKG 266
>gi|302795346|ref|XP_002979436.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
gi|300152684|gb|EFJ19325.1| hypothetical protein SELMODRAFT_177686 [Selaginella moellendorffii]
Length = 500
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L +M S G+HPD T ++ +LC ++L EA K L+ M++ P++ +Y+++I +
Sbjct: 33 FLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLC 92
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++AV ++ +M +P + + L +A +++E + GC
Sbjct: 93 KGGRVDEAVALLSKM--RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDI 150
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + ++ A + + RGF P + +++GL G K A
Sbjct: 151 FTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 2/204 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+A+L + +R CVP L S + S++ D+L EM G PD T L+
Sbjct: 100 AVALLSK-MRKKCVPTAVTYNSLISGLCKAERASEAY-DLLEEMVYSGCIPDIFTYTTLI 157
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C + +A +V + + + PD+ +YS +I + + +A+++ M+ +
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + + +M +A+ ++E + G Y ++ G + A
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
+ MT +G P + +++GL
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGL 301
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 96/233 (41%), Gaps = 16/233 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVAD 157
+ Y+ L+S + + A+ +L+R +G P V L+ L R D
Sbjct: 222 VTYNSLIS-GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL---DDAYD 277
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G PD T L+ LC ++L +A +L M C P + +Y+ ++
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337
Query: 218 TARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + +A + M E M P I + + NR +A+E++E R+ C
Sbjct: 338 RANQLEEARKFMLE---EMDCPPNVVSFNIMIRGLCKVNRS-SEAMELVEEARRRRCNPD 393
Query: 277 FQGYEVVVEGCLECREYIL--AGKTVMGMTER-GFIPYIKVRQKVVEGLAGVG 326
Y V++G CRE + A + M E G +P +V GL G
Sbjct: 394 VVMYTTVIDGL--CREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAG 444
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 96 SRPKIAYDYLLSYTLQSLHP-----------------LPLALAILQRTLRSGCVPVPQIR 138
+R AYD L T + L P L A+ IL R C P
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ + R Q + +LE + P+ + N ++ LC +++ EA ++++
Sbjct: 330 NTILDGYC-RANQLEEARKFMLE--EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C PD+ Y+ VI + +K ++A + ++M+ G +P + L +
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLVTGLCNAGML 446
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A IE KGC Y ++++ + A + + M +RGF
Sbjct: 447 DRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492
>gi|242066030|ref|XP_002454304.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
gi|241934135|gb|EES07280.1| hypothetical protein SORBIDRAFT_04g028250 [Sorghum bicolor]
Length = 638
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/265 (21%), Positives = 107/265 (40%), Gaps = 4/265 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPL-RPRSRPK-IAYDYLLSYTLQSLHPLPLALA 121
P+ F++ + IDE F + R RP + + ++++ L L A+
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTVVMNNMINF-LGKAGRLDDAMK 356
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ Q C+P + A E + ++ V MK G P T + L+
Sbjct: 357 LFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGF 416
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +++ +A +L+ M P +Y +I A+ A++ + A E+ +E+ N G
Sbjct: 417 CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSA 476
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ + + +A R + A+ M + + + GC Y ++ G A T+
Sbjct: 477 RVYAVMIKHLGKAGR-LDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMR 535
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVG 326
M E G IP I ++ GLA G
Sbjct: 536 RMQEHGCIPDINSYNIILNGLAKTG 560
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKD-YQQIPELLGSFEEACQNPNPFSF---LSNFPQN 76
+ +LR + S+ T ++A ++K ++P +E+ +P+ F++ + F +
Sbjct: 360 EMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 419
Query: 77 HRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+R++ +++EM E P P AY L+ L LA + Q L+ C
Sbjct: 420 NRMEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDLACELFQE-LKENCG 472
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ L + + ++ EM +G PD N L+S L L EA
Sbjct: 473 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 532
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ M C+PD+ SY+I++ ++ + A+EM+ M
Sbjct: 533 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 572
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 85/205 (41%), Gaps = 18/205 (8%)
Query: 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
F PC + SL + A AK Y EL +E C + + +
Sbjct: 437 FPPCPAAYCSL------------IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 484
Query: 75 QNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+ +D+ + F + P + AY+ L+S L L AL+ ++R GC+
Sbjct: 485 HLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMS-GLARTGMLDEALSTMRRMQEHGCI 543
Query: 133 P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P + ++L+ L + ++L MK PD + N ++ +L EAA
Sbjct: 544 PDINSYNIILNG--LAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEAA 601
Query: 192 KVLKGMSSAECVPDLESYSIVIGAM 216
K+++ M++ DL +YS ++ A+
Sbjct: 602 KLMEEMNTLGFEYDLITYSSILEAI 626
>gi|357120470|ref|XP_003561950.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 925
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 62/269 (23%), Positives = 123/269 (45%), Gaps = 17/269 (6%)
Query: 26 RSMSSLRTLEETVRAAVDAKDYQ---QIPELLGSFEEACQNPNPFSF---LSNFPQNHRI 79
R +L T ++ D+ D ++ EL+ + CQ P+ +S+ +S F + ++
Sbjct: 465 RPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKA--NGCQ-PDEWSYTELISGFCKISKM 521
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
++ M + R ++ Y L+S + L A +L+R RSGC P Q
Sbjct: 522 ELASGMFNEMMD-RGLCPNEVTYTALISGYCKD-EKLDCAARMLERMKRSGCRPNVQTYN 579
Query: 140 LLSSAWLERRCQS--QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L ++ S + + ++LE K PD T + +++ LC + A ++ M
Sbjct: 580 VLIHGLTKQNNFSGAEELCKVMLEEK---ISPDVVTYSTVINGLCNNGAIPLALEMFNKM 636
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
C+P+L +YS +I A+ + +A EM E+ GL+P + +K+ + +
Sbjct: 637 VKHGCLPNLHTYSSLIQALGQEGRVEEAEEMFSELK-KQGLIPDEVTYVKMIEVCVMSGK 695
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ +A + + + GC Q Y+V+++G
Sbjct: 696 VDRAFDFLGEMINAGCQPTLQTYDVLIKG 724
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 94/235 (40%), Gaps = 9/235 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVA 156
+ Y+ L++ ++++ + AL + + GC+P L + C ++
Sbjct: 401 VTYNALMNVLMENME-IDSALIVFNMMGKHGCLPNTSSYNELIRGY----CTIGDTEKAM 455
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L M P T N ++ C A +VL+ M + C PD SY+ +I
Sbjct: 456 SMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRVLELMKANGCQPDEWSYTELISGF 515
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K A M EM ++ GL P + + + + ++ A M+E ++R GC
Sbjct: 516 CKISKMELASGMFNEM-MDRGLCPNEVTYTALISGYCKDEKLDCAARMLERMKRSGCRPN 574
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Q Y V++ G + + A + M E P + V+ GL G LA
Sbjct: 575 VQTYNVLIHGLTKQNNFSGAEELCKVMLEEKISPDVVTYSTVINGLCNNGAIPLA 629
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 91/207 (43%), Gaps = 16/207 (7%)
Query: 88 SFIPLRPRSRPKIAYDYLLSYT--LQSLHPLPLALAILQR---TLRSGCVPVPQIRLLLS 142
+++ + + PK+ L +YT L L+ L + ++ R LR G P LL+
Sbjct: 179 NYLDMFSQRGPKMG---LFTYTTLLIQLNKLNMTSTVMDRYHQILREGLQP----NLLIY 231
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ + C+ +V D I+ ++ G PD T ++ C L A ++ M
Sbjct: 232 NSVINALCKDGNVRDAESIINKVFKSGMKPDTFTYTSMILGYCRNRDLDSAFEIFNRMDE 291
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P+ +YS +I + + + N+A++ + EM + G++P AL +
Sbjct: 292 EGCEPNAATYSTLINGLCNSGRVNEALDFISEMTRH-GVLPTVHTFTAPIVALCDMGRIE 350
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
A ++ +++KGC Y ++ G
Sbjct: 351 DAWKIFIDMKKKGCKPNVYTYTSLISG 377
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 45/203 (22%), Positives = 90/203 (44%), Gaps = 2/203 (0%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
+A+ +L+ +GC P L S + + + + + + EM G P+ T L
Sbjct: 488 VAIRVLELMKANGCQPDEWSYTELISGFC-KISKMELASGMFNEMMDRGLCPNEVTYTAL 546
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+S C ++L AA++L+ M + C P++++Y+++I ++ + A E+ K M L
Sbjct: 547 ISGYCKDEKLDCAARMLERMKRSGCRPNVQTYNVLIHGLTKQNNFSGAEELCKVM-LEEK 605
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P V L N + A+EM + + GC Y +++ + A
Sbjct: 606 ISPDVVTYSTVINGLCNNGAIPLALEMFNKMVKHGCLPNLHTYSSLIQALGQEGRVEEAE 665
Query: 298 KTVMGMTERGFIPYIKVRQKVVE 320
+ + ++G IP K++E
Sbjct: 666 EMFSELKKQGLIPDEVTYVKMIE 688
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 83/222 (37%), Gaps = 11/222 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L A I R GC P S + C S V D + EM G P
Sbjct: 279 LDSAFEIFNRMDEEGCEP----NAATYSTLINGLCNSGRVNEALDFISEMTRHGVLPTVH 334
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T + +LC + ++ +A K+ M C P++ +Y+ +I +R A+ + M
Sbjct: 335 TFTAPIVALCDMGRIEDAWKIFIDMKKKGCKPNVYTYTSLISGQRVSRM---AIGLFHRM 391
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G++P + L N E+ A+ + + + GC Y ++ G +
Sbjct: 392 SRD-GVVPNTVTYNALMNVLMENMEIDSALIVFNMMGKHGCLPNTSSYNELIRGYCTIGD 450
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A + M + P + +++G G+ +A V
Sbjct: 451 TEKAMSMLTNMLKGRPTPTLVTYNIIIKGYCDSGDTDVAIRV 492
>gi|449449535|ref|XP_004142520.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
gi|449518358|ref|XP_004166209.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Cucumis sativus]
Length = 455
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/197 (22%), Positives = 82/197 (41%), Gaps = 7/197 (3%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
LL++ +LE S D++ +M G PD GT N L+ +C ++ + +
Sbjct: 258 LLNAGYLE------SAKDMVRKMTKEGSVPDIGTFNSLIDVICNSGEVDFCINIFHEVCK 311
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +Y I+I A S + ++A ++ + G +P + + + +
Sbjct: 312 LGLCPDINTYKILIPATSKVGRIDEAFRLL-HCCIEDGHVPFPSLYGPILKGMCKRGQFD 370
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A ++ KG P Y +++ C ++ A +M M E G P + V
Sbjct: 371 DAFCFFGDMKHKGHPPNRPVYTMLITMCGRGGRFVDAANYLMEMAELGLPPISRCFDMVT 430
Query: 320 EGLAGVGEWKLATVVRQ 336
+GL G+ LA + Q
Sbjct: 431 DGLKNCGKHDLAKKIEQ 447
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 81/183 (44%), Gaps = 2/183 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-SAECVP 204
L R + ++ +LL+MK+ T ++++ + A + S S +C
Sbjct: 117 LARTRKYTTMWKVLLQMKTQNLKISPETISFIIQEYGKQGLVDNAVTIFNQCSKSIDCPQ 176
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+E Y+ ++ A+ + + A +++ M+ G+ P + + + +M +A E
Sbjct: 177 TVEVYNALLFALCEVKMFHGAYALIRRMI-RKGVTPDKKTYGTLVTGWCSAGKMKEAQEF 235
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E + +KG +G +++VEG L A V MT+ G +P I +++ +
Sbjct: 236 LEEMSQKGFNPPLRGRDLLVEGLLNAGYLESAKDMVRKMTKEGSVPDIGTFNSLIDVICN 295
Query: 325 VGE 327
GE
Sbjct: 296 SGE 298
>gi|357520891|ref|XP_003630734.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524756|gb|AET05210.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 520
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 47/207 (22%), Positives = 90/207 (43%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A + L GC + LL + LE C+ V D L +M S PD T +
Sbjct: 232 ARELFDAMLEQGC----HVDLLAYNNLLEALCKGGHVDEAMDFLNDMLSKKVEPDAFTYS 287
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ S C + + A VL M +P++ +Y+ +I + +K +A +++ EM+ +
Sbjct: 288 IFIRSYCDANNVHSAFGVLDKMRRCNLLPNVFTYNCIIKRLCKIKKVEEAYQLLDEMI-S 346
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL P + A + E+ +A+++I +E+ C Y +V++ + +
Sbjct: 347 SGLKPDTWSYNAIQAYHCDHCEVNRALKLISRMEKDVCFPDRHTYNMVLKLLIRIGRFDK 406
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M ++ F P + ++ GL
Sbjct: 407 ATEVWECMGDKKFYPSVSTYSVMIHGL 433
>gi|356562834|ref|XP_003549673.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Glycine max]
Length = 747
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 52/242 (21%), Positives = 98/242 (40%), Gaps = 42/242 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A ++ + GC P + + ++ C+ S +++ M S G PD T N
Sbjct: 419 ASHLVDDAIAKGCPP----DIFTYNTLIDGYCKQLKLDSATEMVNRMWSQGMTPDVITYN 474
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM--- 232
L++ LC + E ++ K M C P++ +Y+I++ ++ A+K N+AV+++ EM
Sbjct: 475 TLLNGLCKAGKSEEVMEIFKAMEEKGCTPNIITYNIIVDSLCKAKKVNEAVDLLGEMKSK 534
Query: 233 -----VLNMGL--------------------MPRQGMVIKVAA-------ALRANREMWK 260
V++ G M +Q V A A M
Sbjct: 535 GLKPDVVSFGTLFTGFCKIGDIDGAYQLFRRMEKQYDVCHTTATYNIIVSAFSEQLNMNM 594
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A+++ ++ GC Y VV++G + K ++ E+ FIP + +V+
Sbjct: 595 AMKLFSVMKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLN 654
Query: 321 GL 322
L
Sbjct: 655 CL 656
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 77/173 (44%), Gaps = 7/173 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G P+ T N +++ LC + + +A+ ++ + C PD+ +Y+ +I
Sbjct: 387 LMNEMAENGCLPNIWTYNLVINGLCKMGCVSDASHLVDDAIAKGCPPDIFTYNTLIDGYC 446
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF---LERKGCP 274
K + A EM+ M + G+ P VI L + K+ E++E +E KGC
Sbjct: 447 KQLKLDSATEMVNRM-WSQGMTPD---VITYNTLLNGLCKAGKSEEVMEIFKAMEEKGCT 502
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++V+ + ++ A + M +G P + + G +G+
Sbjct: 503 PNIITYNIIVDSLCKAKKVNEAVDLLGEMKSKGLKPDVVSFGTLFTGFCKIGD 555
Score = 38.1 bits (87), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 29/126 (23%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK+ G PD T ++ C + + + K L +P L ++ V+ + K
Sbjct: 602 MKNSGCDPDNYTYRVVIDGFCKMGNITQGYKFLLENMEKRFIPSLTTFGRVLNCLCVKDK 661
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEFLERKGCPIGFQGY 280
++AV ++ ++L G++P V A++++ A + ++E L +KG I + Y
Sbjct: 662 VHEAVGII-HLMLQKGIVPET-----VNTIFEADKKVVAAPKILVEDLLKKG-HIAYYTY 714
Query: 281 EVVVEG 286
E++ +G
Sbjct: 715 ELLYDG 720
>gi|224125496|ref|XP_002319601.1| predicted protein [Populus trichocarpa]
gi|222857977|gb|EEE95524.1| predicted protein [Populus trichocarpa]
Length = 460
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 73/357 (20%), Positives = 147/357 (41%), Gaps = 37/357 (10%)
Query: 13 VNFRPCLLQFSSLRS--------MSSLRTLEETVRAAV--DAKDYQQIP----------- 51
+ +P L+ F++L S M +++ +E V+ D Y I
Sbjct: 4 LGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGNTTM 63
Query: 52 --ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSY 108
+LL EE PN ++ + + +++ E ++ F + P + Y + +
Sbjct: 64 ALQLLKKMEEKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYSSILH 123
Query: 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
+L + A ++ ++ + +P +L ++R S++ + M G
Sbjct: 124 GFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGLCKKRMISEAWL-VFETMTEKGLE 182
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N LV C+ Q+ EA K+ M C P++ SY+I+I + + ++A +
Sbjct: 183 PDVYTYNALVDGYCSRSQMDEAQKLFNIMDRKGCAPNVRSYNILINGHCKSGRIDEAKGL 242
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVV 284
+ EM + L P + + +R ++ + E E L ++ C G Y +V+
Sbjct: 243 LAEMS-HKSLTPD---IFTYSTLMRGFCQVGRPQEAQELL-KEMCSYGLLPNLITYSIVL 297
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+G + A + + M E P I + ++EG+ G+ + A R+ F+ L
Sbjct: 298 DGLCKHGHLDEAFELLKAMQESKIEPNIFIYTILIEGMCTFGKLEAA---RELFSNL 351
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 70/156 (44%), Gaps = 1/156 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q ++L EM S G P+ T + ++ LC L EA ++LK M ++ P++ Y+I+
Sbjct: 272 QEAQELLKEMCSYGLLPNLITYSIVLDGLCKHGHLDEAFELLKAMQESKIEPNIFIYTIL 331
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M T K A E+ + + G+ P + + L +A E+ + G
Sbjct: 332 IEGMCTFGKLEAARELFSNLFVK-GIQPTVVTYTVMISGLLKGGLSNEACELFREMAVNG 390
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
C Y V+++G L + A + + M +GF
Sbjct: 391 CLPNSCTYNVIIQGFLRNGDTPNAVRLIEEMVGKGF 426
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 1/161 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M +G P T N L+S LC+ ++++A K+ M PD+ +YS +I +
Sbjct: 1 MFKLGLQPTLVTFNTLLSGLCSKAKIMDAVKLFDEMVKMGHEPDVITYSTIINGLCKMGN 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
T A++++K+M G P + +L +R + +A++ + ++G P Y
Sbjct: 61 TTMALQLLKKME-EKGCKPNVVAYNTIIDSLCKDRLVTEAMDFFSEMVKEGIPPDVFTYS 119
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ G A M ER IP +++GL
Sbjct: 120 SILHGFCNLGRVNEATSLFKQMVERNVIPNKVTFTILIDGL 160
>gi|357127305|ref|XP_003565323.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Brachypodium distachyon]
Length = 746
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 2/135 (1%)
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
V + + + + VPD +YS V+ A++ A + +DAV ++ EMV++ G++ + + A L
Sbjct: 301 VHRSIPAWKLVPDKFTYSTVVSALADAGRVDDAVALVHEMVVD-GVVAAEAFNPVLGAML 359
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
R ++ A ++ F++ KGC Y V++ G L C A + M +P +
Sbjct: 360 RTG-DVTGAAKLFSFMQLKGCAPSAATYNVLLHGLLLCGRAKAAMGVMRRMERAEVVPGV 418
Query: 313 KVRQKVVEGLAGVGE 327
VV+GL G
Sbjct: 419 MTYGAVVDGLVRCGR 433
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 76/180 (42%), Gaps = 19/180 (10%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M IG P+ T + L++ LC + + +A V K M CVPD +Y+ +I +
Sbjct: 548 DMLRIGCTPNAVTYSVLINGLCNVGRSKDAMMVWKHMLGRGCVPDTIAYTSMIKGFCVSG 607
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP------ 274
+ + + +M+ P + L +++ +A++++ + + C
Sbjct: 608 MVDAGLRLFYDMLARGDTHPDVICYNVLLDGLLRAKDLPRAMDLLNQMLDQACDPDTVTC 667
Query: 275 --------IGFQGYE----VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+G +G E +VV C R AG+ +M M + +P V + VV G+
Sbjct: 668 NTFLREIEVGQKGQEFLEGLVVRLCNRKRNKA-AGEVLMVMLAKYIVPEAAVLEMVVRGV 726
>gi|356495784|ref|XP_003516753.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22670,
mitochondrial-like [Glycine max]
Length = 558
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 128/318 (40%), Gaps = 63/318 (19%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
++I A+ S+ + +L+F +SS R+ + A+D+ + + +E
Sbjct: 236 VLIDALVKGDSVEHAHKVVLEFKGSIPLSS-RSFNVLMHGWCRARDFDNARKAMEDMKEH 294
Query: 61 CQNPNPFS---FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLH--- 114
P+ FS F+ + + +D++LE +R P A ++YT LH
Sbjct: 295 GFEPDVFSYTNFIEAYGHERDFRKVDQVLEE---MRENGCPPNA----VTYTSVMLHLGK 347
Query: 115 --PLPLALAILQRTLRSGCV-PVP----QIRLLLSSAWLERRCQSQSVADILLEMKSIGY 167
L AL + ++ GCV P I +L + L+ C D+ +M G
Sbjct: 348 AGQLRKALEVYEKMKSDGCVADTPFYSSMIFILGKAGRLKDAC------DVFEDMPKQGV 401
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC------------------------- 202
D T N ++S+ CA + A ++LK M C
Sbjct: 402 VRDVVTYNSMISTACAHSREETALRLLKEMEDGSCKPNVGTYHRLLKMCCKKKRMKVLKF 461
Query: 203 ----------VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
PDL +YS+++ A+ + K DA ++EMVL G P+ + K+A L
Sbjct: 462 LLDHMFKNNISPDLATYSLLVNALRKSGKVEDAYSFLEEMVLR-GFTPKPSTLKKLAGEL 520
Query: 253 RANREMWKAVEMIEFLER 270
+ + + V + E+++R
Sbjct: 521 ESKSMLEEKVRVEEWMDR 538
>gi|302792252|ref|XP_002977892.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
gi|300154595|gb|EFJ21230.1| hypothetical protein SELMODRAFT_107734 [Selaginella moellendorffii]
Length = 500
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 2/174 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L +M S G+HPD T ++ +LC ++L EA K L+ M++ P++ +Y+++I +
Sbjct: 33 FLGKMVSKGFHPDVYTYTAVIHALCVENRLHEARKFLEEMANRNLTPNVVTYTVLIDGLC 92
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++AV ++ +M +P + + L +A +++E + GC
Sbjct: 93 KGGRVDEAVALLSKM--RKKCVPTAVTYNSLISGLCKAERASEAYDLLEEMVYSGCIPDI 150
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + ++ A + + RGF P + +++GL G K A
Sbjct: 151 FTYTTLITGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEA 204
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 88/204 (43%), Gaps = 2/204 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+A+L + +R CVP L S + S++ D+L EM G PD T L+
Sbjct: 100 AVALLSK-MRKKCVPTAVTYNSLISGLCKAERASEAY-DLLEEMVYSGCIPDIFTYTTLI 157
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C + +A +V + + + PD+ +YS +I + + +A+++ M+ +
Sbjct: 158 TGFCKSKKSDDALRVFEQLVARGFRPDVVTYSCLIDGLCKEGRLKEAIDLFGRMIKSGSC 217
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + + +M +A+ ++E + G Y ++ G + A
Sbjct: 218 MPNTVTYNSLISGFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARLDDAYD 277
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
+ MT +G P + +++GL
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGL 301
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 96/233 (41%), Gaps = 16/233 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVAD 157
+ Y+ L+S + + A+ +L+R +G P V L+ L R D
Sbjct: 222 VTYNSLIS-GFCRMGKMDEAMNLLERMAETGSSPDVVTYTTLMNGFCKLARL---DDAYD 277
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G PD T L+ LC ++L +A +L M C P + +Y+ ++
Sbjct: 278 LLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTYNTILDGYC 337
Query: 218 TARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + +A + M E M P I + + NR +A+E++E R+ C
Sbjct: 338 RANQLEEARKFMLE---EMDCPPNVVSFNIMIRGLCKVNRS-SEAMELVEEARRRRCNPD 393
Query: 277 FQGYEVVVEGCLECREYIL--AGKTVMGMTER-GFIPYIKVRQKVVEGLAGVG 326
Y V++G CRE + A + M E G +P ++ GL G
Sbjct: 394 VVMYTTVIDGL--CREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAG 444
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 49/230 (21%), Positives = 90/230 (39%), Gaps = 24/230 (10%)
Query: 96 SRPKIAYDYLLSYTLQSLHP-----------------LPLALAILQRTLRSGCVPVPQIR 138
+R AYD L T + L P L A+ IL R C P
Sbjct: 270 ARLDDAYDLLNQMTRKGLTPDVVTFTSLMDGLCRENRLSDAVHILGEMRRKSCSPTVYTY 329
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ + R Q + +LE + P+ + N ++ LC +++ EA ++++
Sbjct: 330 NTILDGYC-RANQLEEARKFMLE--EMDCPPNVVSFNIMIRGLCKVNRSSEAMELVEEAR 386
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C PD+ Y+ VI + +K ++A + ++M+ G +P + L +
Sbjct: 387 RRRCNPDVVMYTTVIDGLCREKKVDEACRVYRKMLEEPGCLPNSITYSTLITGLCNAGML 446
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A IE KGC Y ++++ + A + + M +RGF
Sbjct: 447 DRARGYIE----KGCVPNIGTYNLLIDAFRKANRDEDARELLDDMVQRGF 492
>gi|125572252|gb|EAZ13767.1| hypothetical protein OsJ_03693 [Oryza sativa Japonica Group]
Length = 715
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P +P + I Y LL+ L + L A +L L+ C P
Sbjct: 472 VDSALELFYSMPCKPNT---ITYTTLLT-GLCNAERLDAAAELLAEMLQKDCAPNVVTFN 527
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S + ++ +++ +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 528 VLVSFFCQKGLMDEAI-ELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 586
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +YS +IG +S + +A++M +V ++G+ P+ + K+ AL
Sbjct: 587 NGVSPDIVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTD 645
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
A++ ++ GC Y ++EG
Sbjct: 646 GAIDFFAYMVSNGCMPNELTYITLIEG 672
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+R +ER Q +L +M G + CN +++++C ++ +A + L
Sbjct: 323 VRFFCRGGMVERAIQ------VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 376
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C PD SY+ V+ + A + DA E++KEMV P + L
Sbjct: 377 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV-RKNCPPNEVTFNTFICILCQKG 435
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ +A +IE + GC + Y +V G C++ R
Sbjct: 436 LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 471
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL++L L GC P ++ + LE C+S ++L EM++ G P+ T N
Sbjct: 195 ALSLLDDMLHRGCQP----SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 250
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ +C ++ +A + L +SS PD SY+ V+ + A++ D E+ EM +
Sbjct: 251 VIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-ME 309
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
MP + + + +A++++E + GC +V+ +
Sbjct: 310 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDD 369
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P V++GL W+ A
Sbjct: 370 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 405
Score = 44.3 bits (103), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 48/224 (21%), Positives = 90/224 (40%), Gaps = 40/224 (17%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG--------------- 196
S A ++ S G PD C L+ +LC + +AA+VL+
Sbjct: 90 SPRAARLVDRATSRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNT 149
Query: 197 -----------------MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
++S PD +Y+ +I + + +A+ ++ +M L+ G
Sbjct: 150 LVAGYCRYGQLDAARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQ 208
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AG 297
P + A+ + +A+E+++ + KGC Y V++ G CRE + A
Sbjct: 209 PSVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING--MCREGRVDDAR 266
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ + ++ GF P V++GL W+ V + FAE+
Sbjct: 267 EFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWE---DVEELFAEM 307
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLA 119
PN ++ L+ R+ E+L L+ P + ++ L+S+ Q + A
Sbjct: 486 PNTITYTTLLTGLCNAERLDAAAELLAEM--LQKDCAPNVVTFNVLVSFFCQK-GLMDEA 542
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNY 176
+ ++++ + GC P L+ + L+ + C S+ ++L + S G PD T +
Sbjct: 543 IELVEQMMEHGCTP----NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 598
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ L D++ EA K+ + P Y+ ++ A+ T+ A++ MV N
Sbjct: 599 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN- 657
Query: 237 GLMPRQGMVIKVAAALRANREMWK 260
G MP + I + L AN + K
Sbjct: 658 GCMPNELTYITLIEGL-ANEDFLK 680
>gi|449532274|ref|XP_004173107.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Cucumis sativus]
Length = 394
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 85/207 (41%), Gaps = 37/207 (17%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A + + + S V + L SA L + + + V+DIL EM G PD T N
Sbjct: 174 LNFAFKLKEEMVTSNVKLVSAVYSTLISA-LFKHGRKEEVSDILREMGENGCKPDTVTYN 232
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ C + L A +V+ M C PD+ S++ +IG + K +
Sbjct: 233 AIINGHCKENDLESAHRVMDEMVEKGCKPDVFSFNTIIGWLCKEGKLD------------ 280
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
KA++++E + R+GCP Y ++ +G E +
Sbjct: 281 ------------------------KAMDLLEDMPRRGCPPDVLSYRIIFDGLCEMMQLKE 316
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M +G++P + K+V+ L
Sbjct: 317 ATSILDEMIFKGYVPRNESINKLVDRL 343
>gi|115440343|ref|NP_001044451.1| Os01g0783100 [Oryza sativa Japonica Group]
gi|20804869|dbj|BAB92551.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113533982|dbj|BAF06365.1| Os01g0783100 [Oryza sativa Japonica Group]
Length = 684
Score = 57.8 bits (138), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P +P + I Y LL+ L + L A +L L+ C P
Sbjct: 441 VDSALELFYSMPCKPNT---ITYTTLLT-GLCNAERLDAAAELLAEMLQKDCAPNVVTFN 496
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S + ++ +++ +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 497 VLVSFFCQKGLMDEAI-ELVEQMMEHGCTPNLITYNTLLDGITKDCNSEEALELLHGLVS 555
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +YS +IG +S + +A++M +V ++G+ P+ + K+ AL
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTD 614
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
A++ ++ GC Y ++EG
Sbjct: 615 GAIDFFAYMVSNGCMPNELTYITLIEG 641
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+R +ER Q +L +M G + CN +++++C ++ +A + L
Sbjct: 292 VRFFCRGGMVERAIQ------VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C PD SY+ V+ + A + DA E++KEMV P + L
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV-RKNCPPNEVTFNTFICILCQKG 404
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ +A +IE + GC + Y +V G C++ R
Sbjct: 405 LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL++L L GC P ++ + LE C+S ++L EM++ G P+ T N
Sbjct: 164 ALSLLDDMLHRGCQP----SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ +C ++ +A + L +SS PD SY+ V+ + A++ D E+ EM +
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-ME 278
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
MP + + + +A++++E + GC +V+ +
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDD 338
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P V++GL W+ A
Sbjct: 339 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 40/212 (18%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG--------------------------- 196
S G PD C L+ +LC + +AA+VL+
Sbjct: 71 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 130
Query: 197 -----MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++S PD +Y+ +I + + +A+ ++ +M L+ G P + A
Sbjct: 131 AARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEA 189
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFI 309
+ + +A+E+++ + KGC Y V++ G CRE + A + + ++ GF
Sbjct: 190 VCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING--MCREGRVDDAREFLNRLSSYGFQ 247
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
P V++GL W+ V + FAE+
Sbjct: 248 PDTVSYTTVLKGLCAAKRWE---DVEELFAEM 276
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 89/204 (43%), Gaps = 16/204 (7%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLA 119
PN ++ L+ R+ E+L L+ P + ++ L+S+ Q + A
Sbjct: 455 PNTITYTTLLTGLCNAERLDAAAELLAEM--LQKDCAPNVVTFNVLVSFFCQK-GLMDEA 511
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNY 176
+ ++++ + GC P L+ + L+ + C S+ ++L + S G PD T +
Sbjct: 512 IELVEQMMEHGCTP----NLITYNTLLDGITKDCNSEEALELLHGLVSNGVSPDIVTYSS 567
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ L D++ EA K+ + P Y+ ++ A+ T+ A++ MV N
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN- 626
Query: 237 GLMPRQGMVIKVAAALRANREMWK 260
G MP + I + L AN + K
Sbjct: 627 GCMPNELTYITLIEGL-ANEDFLK 649
>gi|449531171|ref|XP_004172561.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g59900-like [Cucumis sativus]
Length = 761
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/207 (20%), Positives = 88/207 (42%), Gaps = 14/207 (6%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
LS W + +C + EM +G PD T + L+ LC +++EA K+L+ +
Sbjct: 349 LSGKWEKAKC-------LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 401
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C+PD+ + + ++ + + + A ++ +M +G MP + L + +
Sbjct: 402 GCIPDVVTCTTLVKGLCMKHRISKATQLFLKMQ-KLGCMPNVVTCATLMKGLCQSGNIKI 460
Query: 261 AVEMIEFLERKGCPIGFQ------GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
A+E+ + + P G Y ++++G +C A + M G IP +
Sbjct: 461 ALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 520
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ G G+WK A + ++
Sbjct: 521 YTSLIHGFCRSGKWKDAKYLFNEMVDI 547
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 16/235 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK---------- 163
H + A + + + GC+P ++ + ++ CQS ++ I LE+
Sbjct: 421 HRISKATQLFLKMQKLGCMP----NVVTCATLMKGLCQSGNIK-IALELHKNMLSDTSPY 475
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
I P+ + + ++ LC + EA ++ K M + +PD+ SY+ +I + K
Sbjct: 476 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 535
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
DA + EMV ++G+ P + L ++ +A E++E + ++GC Y +
Sbjct: 536 DAKYLFNEMV-DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 594
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
V+G A + M M + G +P + +++GL G K A + ++
Sbjct: 595 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM 649
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 83/196 (42%), Gaps = 14/196 (7%)
Query: 142 SSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
S W + +C + EM +G D T + L+ LC +++EA ++L+ M
Sbjct: 169 SGKWEKAKC-------LFNEMLDVGIRSDVTTSSMLIDILCKEGKVIEANELLEVMIQRG 221
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIK-VAAALRANRE 257
C+ D+ +YS +I + + ++A + M +G P G ++K + N
Sbjct: 222 CILDIVTYSTLIKGLCMKHRISEATRLFMSMQ-KLGCRPDAIAYGTLMKGLCQTGNINTA 280
Query: 258 MWKAVEMIEFLERKG--CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ EM+ R G C Y ++++G + R A + M +G +P +
Sbjct: 281 LQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRREDEARELFKEMKAQGIMPDVISY 340
Query: 316 QKVVEGLAGVGEWKLA 331
++ G G+W+ A
Sbjct: 341 TTLIHGFCLSGKWEKA 356
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 77/176 (43%), Gaps = 7/176 (3%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M +G PD T L+ C +++EA ++L+ M C+ D+ +YS +I + +
Sbjct: 1 MLHVGIQPDVTTSGVLIDMFCKEGKVIEANELLEVMVQRGCILDIVTYSTLIKGLCMKHR 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQ---GMVIK-VAAALRANREMWKAVEMIEFLERKG--CPI 275
++A ++ M +G P G ++K + + N + EM+ + G C
Sbjct: 61 ISEATQLFMSMK-KLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKP 119
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++++G + R A + M +G +P + ++ G G+W+ A
Sbjct: 120 TLVSYSIIIDGLCKDRREDEARELFKEMKAQGMMPDVISYTSLIHGFCRSGKWEKA 175
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L+ ++ GC+ + ++ S ++ C +++ + + MK +G PD
Sbjct: 29 ANELLEVMVQRGCI----LDIVTYSTLIKGLCMKHRISEATQLFMSMKKLGCRPDAIAYG 84
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSA------ECVPDLESYSIVIGAMSTARKTNDAVEMM 229
L+ LC ++ A + + M + +C P L SYSI+I + R+ ++A E+
Sbjct: 85 TLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCKPTLVSYSIIIDGLCKDRREDEARELF 144
Query: 230 KEMVLNMGLMP 240
KEM G+MP
Sbjct: 145 KEMKAQ-GMMP 154
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EMK++G PD + L+ C + +A + M PD+ ++S++I +
Sbjct: 504 ELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDML 563
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A E++ E+++ G +P + L N + +A ++ +++ GC
Sbjct: 564 CKEGKVIEANELL-EVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPD 622
Query: 277 FQGYEVVVEG---------CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y +++G LE + +L+ G F P + +++GL G
Sbjct: 623 VVTYGTLMKGLCQTGNIKTALELHKKMLSDT---GQYGTNFKPDVISYSIIIDGLCKHGR 679
Query: 328 WKLATVVRQRFAELKS 343
A R+ F E+K+
Sbjct: 680 EDEA---RELFKEMKA 692
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 143 SAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ V A+ LLE M G P+ T LV LC D++ EA ++ M
Sbjct: 557 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK 616
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
C+PD+ +Y ++ + A+E+ K+M+ + G
Sbjct: 617 LGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTG 654
>gi|302825350|ref|XP_002994298.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
gi|300137829|gb|EFJ04642.1| hypothetical protein SELMODRAFT_138440 [Selaginella moellendorffii]
Length = 577
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 61/268 (22%), Positives = 110/268 (41%), Gaps = 21/268 (7%)
Query: 82 IDEMLESFIPLRPRSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLR-----SGCVPVP 135
IDE LE F + P I Y+ +++ L + + L + + GC P
Sbjct: 50 IDEALEQFKSMGEECSPNVITYNTVVN-GLCKANRIDEGLELFDDMEKRYEASHGCEP-- 106
Query: 136 QIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
++ S ++ C++Q V + M+++G P+ T + L+ LC +D++ EA
Sbjct: 107 --DVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYS 164
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM---MKEMVLNMGLMPRQGMVIKVA 249
+L + + VP Y+ V+ K ++ +E+ MKE + ++ M+
Sbjct: 165 LLMQLKGEDMVPRAMYYNAVVNGFKRQGKPSECLELLLHMKEKGFGINIIDFNAML---- 220
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
AL N E KA + E L + G Y V V G + + A + ++ M E
Sbjct: 221 HALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVT 280
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQR 337
P + +++G G A V R
Sbjct: 281 PDVITYSSIIDGFCKAGRMDKADDVFTR 308
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 55/104 (52%), Gaps = 7/104 (6%)
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKV 193
++ +LL S ++ C+ + + L + KS+G P+ T N +V+ LC +++ E ++
Sbjct: 31 KMDVLLHSTLIQGLCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEGLEL 90
Query: 194 LKGM-----SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
M +S C PD+ SYS VI A+ A++ + A E K M
Sbjct: 91 FDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFKRM 134
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 51/97 (52%), Gaps = 1/97 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ +M G PD T ++ SLC +D++ A + M+S C P L +Y+++IG
Sbjct: 463 EVIEQMVLKGVRPDEATYVAVLRSLCGLDRVDSAIAEFEKMASRGCAPGLVTYTLLIGEA 522
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
+A +DA + + MV G P+ + +++ LR
Sbjct: 523 CSADMADDAFRIFEAMVA-AGFTPQAQTMRTLSSCLR 558
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 75/169 (44%), Gaps = 19/169 (11%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ R + C+P P + L + E + +S+ + +M + G+ P T N L+ +
Sbjct: 305 VFTRMMVHECIPHPVTFMTLLHGFSEHK-KSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 363
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN------ 235
C D + A ++ M + PD +Y+ +I + AR+ ++A E + M +
Sbjct: 364 CGADSVESALEIYHKMKRKKRQPDANTYAPLIQCLCRARRVDEAKEFLDVMEADNVVPNG 423
Query: 236 ------MGLMPRQGMVIKVAAALRANREMWK------AVEMIEFLERKG 272
+ ++ +QG V + + L E+ K AVE+IE + KG
Sbjct: 424 AICHALVEVLCKQGEVDEACSVLDNVVEICKAGEPDEAVEVIEQMVLKG 472
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/181 (22%), Positives = 73/181 (40%), Gaps = 5/181 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++L EMK G D + L+ LC ++ EA + K M EC P++ +Y+
Sbjct: 14 QVDQAFELLDEMKERGVKMDVLLHSTLIQGLCRKGRIDEALEQFKSMGE-ECSPNVITYN 72
Query: 211 IVIGAMSTARKTNDAVEMMKEM----VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
V+ + A + ++ +E+ +M + G P V AL + + KA E +
Sbjct: 73 TVVNGLCKANRIDEGLELFDDMEKRYEASHGCEPDVISYSTVIDALCKAQRVDKAYEYFK 132
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ GC Y +++G + A +M + +P VV G G
Sbjct: 133 RMRAVGCAPNVVTYSSLIDGLCKVDRVDEAYSLLMQLKGEDMVPRAMYYNAVVNGFKRQG 192
Query: 327 E 327
+
Sbjct: 193 K 193
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +R L+SG P ++ + + C++ V + ILLEM PD T +
Sbjct: 232 ACQFFERLLKSGKKP----NVVTYNVAVHGLCKAGKVDEAYRILLEMVESKVTPDVITYS 287
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C ++ +A V M EC+P ++ ++ S +K+ +A + ++MV N
Sbjct: 288 SIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV-N 346
Query: 236 MGLMP 240
G +P
Sbjct: 347 AGFIP 351
>gi|449485308|ref|XP_004157129.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At4g31850, chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 2/208 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A ++R S+ V +L EM+ +G P+ T +
Sbjct: 211 ALEVYRRMVSEGLKPSLKTYSALMVALGKKR-DSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA ++ + M C PDL +Y+++I A+ A + +A E+ +M N G
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKAN-GH 328
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P Q + I + ++ E +E G + ++V+ + R++ A
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
T M ++G +P + ++ GL G
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAG 416
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/244 (23%), Positives = 98/244 (40%), Gaps = 3/244 (1%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
SL+T + A +D + + LL E+ PN ++F R IDE E F
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285
Query: 90 IPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+ P + +L L + L A + + +G P I + L + +
Sbjct: 286 RRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDF 345
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + +M++ GY PD T LV LC EA M +P+L +
Sbjct: 346 G-DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ +I + A + DA++++ M ++G+ P I + E KAVE E +
Sbjct: 405 YNTLICGLLRAGRIEDALKLLDTME-SVGVQPTAYTYITFIDYFGKSGETGKAVETFEKM 463
Query: 269 ERKG 272
+ KG
Sbjct: 464 KAKG 467
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 4/192 (2%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
++ D+ +MK++G PD T N L++ ++ E ++ K M S C PD +Y+I
Sbjct: 804 TEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
VI +++ + + A++ ++V + P + L + +A+ + E +
Sbjct: 864 VISSLAKSNNLDKALDFFYDLV-SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
GC + +++ G + + A + M G P +K +V+ L G A
Sbjct: 923 GCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982
Query: 332 TVVRQRFAELKS 343
F ELKS
Sbjct: 983 LYY---FNELKS 991
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 40/195 (20%), Positives = 79/195 (40%), Gaps = 4/195 (2%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKI- 100
D D E E P+ +F + + DE +F +R + P +
Sbjct: 344 DFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLH 403
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
Y+ L+ L++ + AL +L G P + + + ++ +
Sbjct: 404 TYNTLICGLLRA-GRIEDALKLLDTMESVGVQPTAYTYITFID-YFGKSGETGKAVETFE 461
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MK+ G P+ CN + SL + +L EA + G+ PD +Y++++ S
Sbjct: 462 KMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAPDSVTYNMMMKCYSKVG 521
Query: 221 KTNDAVEMMKEMVLN 235
+ ++AV ++ EM+ N
Sbjct: 522 QVDEAVNLLSEMIRN 536
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
++ G PD T N ++ + Q+ EA +L M C PD+ + +I ++ A +
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A +M M +M L P + + L + KA+E+ E + K C +
Sbjct: 558 VDEAWQMFDRMK-DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIXKKCSPNTISFN 616
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++ + E LA K MT P + V+ GL
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 82 IDEMLESFIPL-----RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
+D+ L+ F L RP R Y L+ L + L A+ + + GC P
Sbjct: 874 LDKALDFFYDLVSSDFRPTPR---TYGPLID-GLAKVGRLEEAMRLFEEMSDYGCKPNCA 929
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
I +L + + + +++ + M + G PD + LV LC ++ EA
Sbjct: 930 IFNILINGY-GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE 988
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+ S PD +Y+ +I + +++ +A+ + EM N G++P
Sbjct: 989 LKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRGIVP 1031
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L R +P +R+L +R + + D K +G P + N L+ L
Sbjct: 744 VLNGICREDSFLIPLVRVLCKH---KRELYAYQIFDKF--TKKLGISPTLASYNCLIGEL 798
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ +A + K M + C PD ++++++ + K + E+ KEM+
Sbjct: 799 LEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI 850
>gi|356524758|ref|XP_003530995.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17140-like [Glycine max]
Length = 875
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 57/236 (24%), Positives = 95/236 (40%), Gaps = 26/236 (11%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A ++L +R+GC P LL S W E R + ++L +M Y PD TCN +
Sbjct: 417 AKSVLHEMIRNGCQPNTYTCNTLLHSLWKEGR--TLEAEEMLQKMNEKCYQPDTVTCNIV 474
Query: 178 VSSLCAIDQLVEAAKVL------------KGMSSA----------ECVPDLESYSIVIGA 215
V+ LC +L +A++++ KG S A C+PD +Y+ +I
Sbjct: 475 VNGLCRNGELDKASEIVSEMWTNGPTSLDKGNSFASLINSIHNVSNCLPDGITYTTLING 534
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ + +A + EM L L P + ++ A +++ +ER GC
Sbjct: 535 LCKVGRLEEAKKKFIEM-LAKNLRPDSVTYDTFIWSFCKQGKISSAFRVLKDMERNGCSK 593
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Q Y ++ G + M E+G P I ++ L G+ K A
Sbjct: 594 TLQTYNALILGLGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDA 649
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 63/271 (23%), Positives = 121/271 (44%), Gaps = 14/271 (5%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPK-IAYD-YLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
++ ++E + FI + ++ RP + YD ++ S+ Q + A +L+ R+GC
Sbjct: 537 KVGRLEEAKKKFIEMLAKNLRPDSVTYDTFIWSFCKQG--KISSAFRVLKDMERNGCSKT 594
Query: 135 PQIR--LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q L+L L Q + + EMK G PD T N +++ LC + +A
Sbjct: 595 LQTYNALILG---LGSNNQIFEIYGLKDEMKEKGISPDICTYNNIITCLCEGGKAKDAIS 651
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+L M P++ S+ I+I A S + A E+ E+ LN+ ++ + + L
Sbjct: 652 LLHEMLDKGISPNVSSFKILIKAFSKSSDFKVACELF-EVALNI-CGRKEALYSLMFNEL 709
Query: 253 RANREMWKAVEMIEF-LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
A ++ +A E+ E L+R F +++ C + R A + + ++G+
Sbjct: 710 LAGGQLSEAKELFEVSLDRYLTLKNFMYKDLIARLCQDER-LADANSLLYKLIDKGYGFD 768
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
V++GL+ G + A + +R EL+
Sbjct: 769 HASFMPVIDGLSKRGNKRQADELAKRMMELE 799
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 52/198 (26%), Positives = 85/198 (42%), Gaps = 16/198 (8%)
Query: 43 DAKDYQQIPELLGSFEE-ACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA 101
DA+ + + +G+F+ C N L N V+DEM+ I P A
Sbjct: 311 DARGLVETMKKVGNFDSLECYNIWLMGLLRNGELLEARLVLDEMVAKGI------EPN-A 363
Query: 102 YDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD--- 157
Y Y ++ L H L A ++ +R+G P + S L C V +
Sbjct: 364 YTYNIMMDGLCRNHMLSDARGLMDLMMRNGVYP----DTVAYSTLLHGYCSRGKVFEAKS 419
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G P+ TCN L+ SL + +EA ++L+ M+ PD + +IV+ +
Sbjct: 420 VLHEMIRNGCQPNTYTCNTLLHSLWKEGRTLEAEEMLQKMNEKCYQPDTVTCNIVVNGLC 479
Query: 218 TARKTNDAVEMMKEMVLN 235
+ + A E++ EM N
Sbjct: 480 RNGELDKASEIVSEMWTN 497
>gi|414872431|tpg|DAA50988.1| TPA: hypothetical protein ZEAMMB73_390723 [Zea mays]
Length = 1627
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 59/248 (23%), Positives = 100/248 (40%), Gaps = 6/248 (2%)
Query: 82 IDEMLESFIPL-RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQR--TLRSGCVPVPQIR 138
IDE F + R RP + + L L A+ + Q TLR C+P
Sbjct: 1306 IDEAYHFFCEMQREGCRPDTVFMNNMINFLGKAGRLDDAMKLFQEMETLR--CIPSVVTY 1363
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ A E + ++ V MK G P T + L+ C +++ +A +L+ M
Sbjct: 1364 NTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKTNRMEKAMMLLEEMD 1423
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
P +Y +I A+ A++ + A E+ +E+ N G + + + +A R +
Sbjct: 1424 EKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSARVYAVMIKHLGKAGR-L 1482
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ M + + + GC Y ++ G A T+ M E G IP I +
Sbjct: 1483 DDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMRRMQEHGCIPDINSYNII 1542
Query: 319 VEGLAGVG 326
+ GLA G
Sbjct: 1543 LNGLAKTG 1550
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 96/220 (43%), Gaps = 15/220 (6%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKD-YQQIPELLGSFEEACQNPNPFSF---LSNFPQN 76
+ +LR + S+ T ++A ++K ++P +E+ +P+ F++ + F +
Sbjct: 1350 EMETLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 1409
Query: 77 HRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+R++ +++EM E P P AY L+ L LA + Q L+ C
Sbjct: 1410 NRMEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDLACELFQE-LKENCG 1462
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ L + + ++ EM +G PD N L+S L L EA
Sbjct: 1463 SSSARVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 1522
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ M C+PD+ SY+I++ ++ + A+EM+ M
Sbjct: 1523 TMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 1562
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 52/115 (45%), Gaps = 3/115 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ + + GC P V L+S L R + M+ G PD + N +
Sbjct: 1485 AINMFDEMNKLGCAPDVYAYNALMSG--LARTGMLDEALSTMRRMQEHGCIPDINSYNII 1542
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ L A ++L M + PD+ SY+ V+GA+S A +A ++MKEM
Sbjct: 1543 LNGLAKTGGPHRAMEMLSNMKQSTVRPDVVSYNTVLGALSHAGMFEEASKLMKEM 1597
>gi|224133106|ref|XP_002327962.1| predicted protein [Populus trichocarpa]
gi|222837371|gb|EEE75750.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 95/209 (45%), Gaps = 2/209 (0%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
+A+ +L++ ++G P I + + R S+++ DI E+K G PD T + L
Sbjct: 207 VAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEAL-DIFSEIKGKGVRPDVFTYSIL 265
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ LC DQ EA+ + M S +PD+ +++I++ + ++A ++K M+ G
Sbjct: 266 MHGLCNSDQKEEASALFNEMMSLNIMPDVVTFNILVDKLCKEGMLSEAQGIIKIMI-EKG 324
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + ++++A + + + KGC Y +++ G + + A
Sbjct: 325 VEPNYATYNSLMNGYCLQNKVFEARMVFDAMITKGCMPNVVSYNILINGYCKAQRIDEAR 384
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ M+ RG IP ++ GL G
Sbjct: 385 ELFDEMSFRGLIPNTFNYNTLISGLCQAG 413
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 80 KVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
+++ E L+ F ++ + RP + +L + L + A A+ + +P V
Sbjct: 238 RLVSEALDIFSEIKGKGVRPDVFTYSILMHGLCNSDQKEEASALFNEMMSLNIMPDVVTF 297
Query: 138 RLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L+ E ++Q + I++E G P+ T N L++ C +++ EA V
Sbjct: 298 NILVDKLCKEGMLSEAQGIIKIMIEK---GVEPNYATYNSLMNGYCLQNKVFEARMVFDA 354
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + C+P++ SY+I+I A++ ++A E+ EM GL+P + + L
Sbjct: 355 MITKGCMPNVVSYNILINGYCKAQRIDEARELFDEMSFR-GLIPNTFNYNTLISGLCQAG 413
Query: 257 EMWKAVEMIEFLERKGC 273
+A E+ + ++ +GC
Sbjct: 414 RHCEARELFKDMQAQGC 430
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 29/123 (23%), Positives = 55/123 (44%), Gaps = 7/123 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
L + A ++L + ++ G P + S+ + C A + EM + GY P
Sbjct: 132 LQRVDFAFSVLGKIIKLGFEPDA----VTFSSLINGLCFEDKFARAMEFFDEMVASGYQP 187
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ T N ++ C I + A +LK M A PD+ Y+ +I + R ++A+++
Sbjct: 188 NLHTYNTIIKGFCKIGKTTVAVGLLKKMDKAGGRPDIVIYNTIIDGLCKDRLVSEALDIF 247
Query: 230 KEM 232
E+
Sbjct: 248 SEI 250
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/129 (23%), Positives = 62/129 (48%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G+ PD T + L++ LC D+ A + M ++ P+L +Y+ +I
Sbjct: 141 VLGKIIKLGFEPDAVTFSSLINGLCFEDKFARAMEFFDEMVASGYQPNLHTYNTIIKGFC 200
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
KT AV ++K+M G P + + L +R + +A+++ ++ KG
Sbjct: 201 KIGKTTVAVGLLKKMD-KAGGRPDIVIYNTIIDGLCKDRLVSEALDIFSEIKGKGVRPDV 259
Query: 278 QGYEVVVEG 286
Y +++ G
Sbjct: 260 FTYSILMHG 268
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C+++ ++ +M++ G PD TC L+ SLC + L A ++ + M + P+L
Sbjct: 414 RHCEAR---ELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAMQDSCLKPNLV 470
Query: 208 SYSIVIGAMSTARK 221
+Y I+I AM + K
Sbjct: 471 TYDILIRAMYKSGK 484
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A + + GC+P ++ + + C++Q + + + EM G P+ N
Sbjct: 348 ARMVFDAMITKGCMP----NVVSYNILINGYCKAQRIDEARELFDEMSFRGLIPNTFNYN 403
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+S LC + EA ++ K M + C PDL + +I++ ++ ++A+ + + M
Sbjct: 404 TLISGLCQAGRHCEARELFKDMQAQGCSPDLVTCTILLDSLCKLGYLDNALRLFRAM 460
>gi|291622145|emb|CBJ23782.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
thaliana]
Length = 630
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 48/216 (22%), Positives = 95/216 (43%), Gaps = 10/216 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LPLALA+L + ++ G P ++ S+ L C + +++ ++ +M +GY PD
Sbjct: 132 LPLALAVLGKMMKLGYEP----DIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTV 187
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ L ++ EA ++ M + C PDL +Y V+ + + A+ ++K+M
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVARGCQPDLFTYGTVVNGLCKRGDIDLALSLLKKM 247
Query: 233 VLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G + ++ + L + M A ++ +E KG Y ++
Sbjct: 248 --EKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYG 305
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M ER P + +++ A G+
Sbjct: 306 RWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGK 341
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 70/174 (40%), Gaps = 36/174 (20%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T N L++ C D+L EA ++ M S +C+PD+ +Y+ +I A+
Sbjct: 351 EMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAK 410
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +E M ++G+V Y
Sbjct: 411 RVEEGMELFRE-------MSQRGLVGNTVT-----------------------------Y 434
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+++G + + +A K M G P I +++GL G+ + A VV
Sbjct: 435 NTLIQGLFQAGDCDMAQKIFKKMVSDGVPPDIITYSILLDGLCKYGKLEKALVV 488
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 76/185 (41%), Gaps = 1/185 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY PD T + L++ C ++ EA ++ M PD
Sbjct: 128 RRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNGYCHGKRISEAVALVDQMVEMGYKPDTV 187
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ MV G P V L ++ A+ +++
Sbjct: 188 TFNTLIHGLFLHNKASEAVALIDRMVAR-GCQPDLFTYGTVVNGLCKRGDIDLALSLLKK 246
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E+ Y +++G + + A M +G P + ++ L G
Sbjct: 247 MEKGKIEANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNSLISCLCNYGR 306
Query: 328 WKLAT 332
W A+
Sbjct: 307 WSDAS 311
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 40/225 (17%), Positives = 104/225 (46%), Gaps = 8/225 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ LAL++L++ + G + + +++ + ++ C+ + + D + +M++ G PD
Sbjct: 237 IDLALSLLKK-MEKGKI---EANVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVF 292
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+S LC + +A+++L M + P++ +++ +I A + K +A ++ EM
Sbjct: 293 TYNSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEM 352
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ + P + + + +A ++ + K C Y +++G + +
Sbjct: 353 I-QRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLIKGFCKAKR 411
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M++RG + +++GL G+ +A + ++
Sbjct: 412 VEEGMELFREMSQRGLVGNTVTYNTLIQGLFQAGDCDMAQKIFKK 456
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 100/227 (44%), Gaps = 6/227 (2%)
Query: 99 KIAYDYLLSYTLQSLHPLPL--ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSV 155
K +YDY + L L L A+A+ ++S P + + LLS+ + + + V
Sbjct: 43 KTSYDYREKLSRNGLSELKLDDAVALFGEMVKSRPFPSIIEFSKLLSA--IAKMNKFDVV 100
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ +M+++G + T + L++ C QL A VL M PD+ + S ++
Sbjct: 101 ISLGEQMQNLGIPHNHYTYSILLNCFCRRSQLPLALAVLGKMMKLGYEPDIVTLSSLLNG 160
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
++ ++AV ++ +MV MG P + L + + +AV +I+ + +GC
Sbjct: 161 YCHGKRISEAVALVDQMV-EMGYKPDTVTFNTLIHGLFLHNKASEAVALIDRMVARGCQP 219
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y VV G + + LA + M + + + +++GL
Sbjct: 220 DLFTYGTVVNGLCKRGDIDLALSLLKKMEKGKIEANVVIYNTIIDGL 266
>gi|255660976|gb|ACU25657.1| pentatricopeptide repeat-containing protein [Verbena intermedia]
Length = 376
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N+ +A +++ L KG G Y +++EG CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VARALQLWNQVTSKGFKPDVQMHNILIRGLCSVGKMQLA 288
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 58/299 (19%), Positives = 121/299 (40%), Gaps = 17/299 (5%)
Query: 45 KDYQQIPELLGSFEEACQNPNPFS-----FLSNFPQNHRIKVIDEMLESFIPLRPRSRPK 99
KD ++ E++GS E ++ + F+ N + I + + M ES R+
Sbjct: 42 KDCFELWEMMGS--EGNRSVSSFNTMMRGLFDNGKVDEVISIWELMNESGFVEDSRTYGI 99
Query: 100 IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
+ + + + Y +SLH L +A + G + +++ L + +
Sbjct: 100 LVHGFCKNGYIDKSLHVLEMA------EQKGGVLDAFAYSAMING--LCKEANLDRAVSV 151
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L M G P+ N L++ L + +A +V + M + C P + +Y+ +I
Sbjct: 152 LNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCK 211
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
+ +A ++KE+ L+ GL P + L + ++ +A+++ + KG Q
Sbjct: 212 NKMFGEAYNLVKEL-LDKGLDPGVITYSMLMEGLCLDHKVARALQLWNQVTSKGFKPDVQ 270
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 271 MHNILIRGLCSVGKMQLALSLYFDMNLWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|242063942|ref|XP_002453260.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
gi|241933091|gb|EES06236.1| hypothetical protein SORBIDRAFT_04g002660 [Sorghum bicolor]
Length = 866
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 62/266 (23%), Positives = 108/266 (40%), Gaps = 30/266 (11%)
Query: 86 LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP-QIRLLLSSA 144
+E+FI S + Y LL + S + A IL + GC P +LL S
Sbjct: 373 VENFIRSGVMSPDVVTYTSLL-HAYCSKGNIAAANRILDEMAQKGCAPNSFTYNVLLQSL 431
Query: 145 WLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS----- 198
W R + A+ LLE M GY D CN ++ LC +L A ++ GM
Sbjct: 432 W---RAGRTTEAERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEGSG 488
Query: 199 ------------------SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
S C+PD +YSI+I A+ + ++A + + EM++ + P
Sbjct: 489 ALGRLGNSFLSVVSDSSISQRCLPDQITYSILISALCKEGRFDEAKKKLLEMIVK-DISP 547
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + + A++++ +E+KGC + Y +++ G E + K +
Sbjct: 548 DSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEEKHKSEEIMKLM 607
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVG 326
M E+G P + +++ G
Sbjct: 608 SEMKEKGISPNVMTYNSLIKSFCQQG 633
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 29/98 (29%), Positives = 51/98 (52%), Gaps = 1/98 (1%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
LA+ +L+ + GC P + LL + E + +S+ + ++ EMK G P+ T N L
Sbjct: 567 LAIKVLRDMEKKGCNPSTRTYNLLIRGF-EEKHKSEEIMKLMSEMKEKGISPNVMTYNSL 625
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ S C + +A +L M E VP++ S+ ++I A
Sbjct: 626 IKSFCQQGMVNKAMPLLDEMLQNELVPNITSFDLLIKA 663
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 145 WLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
WL R + ++L EM G P+ T N +VS LC + +A +V + S
Sbjct: 322 WLSGLVRNGRVGEAQELLREMAHEGIQPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGV 381
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWK 260
PD+ +Y+ ++ A + A ++ EM G P + +L RA R +
Sbjct: 382 MSPDVVTYTSLLHAYCSKGNIAAANRILDEMA-QKGCAPNSFTYNVLLQSLWRAGRTT-E 439
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
A ++E + KG + G ++++G +A V GM E G
Sbjct: 440 AERLLERMNEKGYSLDTAGCNIIIDGLCRNSRLDVAMDIVDGMWEEG 486
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 76/204 (37%), Gaps = 37/204 (18%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
LLEM PD + + C + A KVL+ M C P +Y+++I
Sbjct: 537 LLEMIVKDISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPSTRTYNLLIRGFEE 596
Query: 219 ARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA--NREMWKAVE 263
K+ + +++M EM G+ P +QGMV K L E+ +
Sbjct: 597 KHKSEEIMKLMSEMK-EKGISPNVMTYNSLIKSFCQQGMVNKAMPLLDEMLQNELVPNIT 655
Query: 264 MIEFLERKGCPI-GFQGYEVVVEG------------CLECREYILAGKTV-------MGM 303
+ L + C I F ++V + CL C E GK + M +
Sbjct: 656 SFDLLIKAYCKITDFPSAQMVFDAALRTCGQKEVLYCLMCTELTTYGKWIEAKNILEMAL 715
Query: 304 TERGFIPYIKVRQKVVEGLAGVGE 327
R I +Q ++ GL VGE
Sbjct: 716 EMRVSIQSFPYKQ-IISGLCEVGE 738
>gi|125587025|gb|EAZ27689.1| hypothetical protein OsJ_11637 [Oryza sativa Japonica Group]
Length = 650
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
AL +Q+ + G P QI + ++ CQ+ V L M + G+ PD T N
Sbjct: 178 ALGYIQQEIADGFEP-DQITY---NTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 233
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL- 234
+V+ LC QL EA +L M C+PD+ +++ +I A+ T + +A+++ +++ +
Sbjct: 234 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 293
Query: 235 ---------------------------------NMGLMPRQGMVIKVAAALRANREMWKA 261
N G P + + L + ++ KA
Sbjct: 294 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 353
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+++++ +E GCP Y +++G
Sbjct: 354 LDLLKDMESTGCPRSTITYNTIIDG 378
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTC 174
LAL + + SGC P + + ++ C + D+L +M+S G T
Sbjct: 317 LALRLFEEMKNSGCTPDE----VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 372
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ LC ++ EA +V M + +++ +I + +K +DA E++ +M+
Sbjct: 373 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI- 431
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ GL P + ++ KA +++E + G + Y ++ G +
Sbjct: 432 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 491
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+A K + GM +G P K V++ L
Sbjct: 492 VALKVLRGMRIKGMRPTPKAYNPVLQSL 519
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN----HRIKVIDEMLESFIPLRPRSRP 98
DA Y Q E+ FE N +F++ QN H +KV+D M++ P
Sbjct: 177 DALGYIQ-QEIADGFEPDQITYN--TFVNGLCQNDHVGHALKVMDVMVQE------GHDP 227
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD 157
+ ++ L L A IL + + GC+P + L+++ R + D
Sbjct: 228 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE--ALD 285
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ ++ G PD T N L+++LC + A ++ + M ++ C PD +Y+ +I +
Sbjct: 286 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 345
Query: 218 TARKTNDAVEMMKEM 232
+ K A++++K+M
Sbjct: 346 SLGKLGKALDLLKDM 360
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ + + D ++ +M S G P+ T N +++ C + +AA +L+ M++
Sbjct: 408 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 467
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y +I + A +T A+++++ M + G+ P V +L +
Sbjct: 468 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIR 526
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ + + G P Y++V G C A ++ M ++GFIP + +
Sbjct: 527 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 586
Query: 319 VEGLAGVG 326
EGL +G
Sbjct: 587 AEGLLNLG 594
>gi|125527955|gb|EAY76069.1| hypothetical protein OsI_03997 [Oryza sativa Indica Group]
Length = 684
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 97/207 (46%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P +P + I Y LL+ L + L A +L L+ C P
Sbjct: 441 VDSALELFYSMPCKPNT---ITYTTLLT-GLCNAERLDAAAELLAEMLQKDCAPNVVTFN 496
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S + ++ +++ +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 497 VLVSFFCQKGLMDEAI-ELVEQMMEHGCTPNLITYNTLLDGITNDCNSEEALELLHGLVS 555
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +YS +IG +S + +A++M +V ++G+ P+ + K+ AL
Sbjct: 556 NGVSPDIVTYSSIIGVLSREDRVEEAIKMF-HIVQDLGMRPKAVIYNKILLALCKRCNTD 614
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
A++ ++ GC Y ++EG
Sbjct: 615 GAIDFFAYMVSNGCMPNELTYITLIEG 641
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+R +ER Q +L +M G + CN +++++C ++ +A + L
Sbjct: 292 VRFFCRGGMVERAIQ------VLEQMSGHGCAANTTLCNIVINTICKQGRVDDAFQFLNN 345
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C PD SY+ V+ + A + DA E++KEMV P + L
Sbjct: 346 MGSYGCSPDTISYTTVLKGLCRAERWEDAKELLKEMV-RKNCPPNEVTFNTFICILCQKG 404
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ +A +IE + GC + Y +V G C++ R
Sbjct: 405 LIEQATMLIEQMSEHGCEVNIVTYNALVNGFCVQGR 440
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL++L L GC P ++ + LE C+S ++L EM++ G P+ T N
Sbjct: 164 ALSLLDDMLHRGCQP----SVVTYTVLLEAVCKSTGFGQAMEVLDEMRAKGCTPNIVTYN 219
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ +C ++ +A + L +SS PD SY+ V+ + A++ D E+ EM +
Sbjct: 220 VIINGMCREGRVDDAREFLNRLSSYGFQPDTVSYTTVLKGLCAAKRWEDVEELFAEM-ME 278
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
MP + + + +A++++E + GC +V+ +
Sbjct: 279 KNCMPNEVTFDMLVRFFCRGGMVERAIQVLEQMSGHGCAANTTLCNIVINTICKQGRVDD 338
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M G P V++GL W+ A
Sbjct: 339 AFQFLNNMGSYGCSPDTISYTTVLKGLCRAERWEDA 374
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 86/212 (40%), Gaps = 40/212 (18%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG--------------------------- 196
S G PD C L+ +LC + +AA+VL+
Sbjct: 71 SRGEAPDVYLCTKLIRNLCRRGRTSDAARVLRAAERSGTAVDVFAYNTLVAGYCRYGQLD 130
Query: 197 -----MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
++S PD +Y+ +I + + +A+ ++ +M L+ G P + A
Sbjct: 131 AARRLIASMPVAPDAYTYTPIIRGLCDRGRVGEALSLLDDM-LHRGCQPSVVTYTVLLEA 189
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFI 309
+ + +A+E+++ + KGC Y V++ G CRE + A + + ++ GF
Sbjct: 190 VCKSTGFGQAMEVLDEMRAKGCTPNIVTYNVIING--MCREGRVDDAREFLNRLSSYGFQ 247
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
P V++GL W+ V + FAE+
Sbjct: 248 PDTVSYTTVLKGLCAAKRWE---DVEELFAEM 276
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 16/204 (7%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLA 119
PN ++ L+ R+ E+L L+ P + ++ L+S+ Q + A
Sbjct: 455 PNTITYTTLLTGLCNAERLDAAAELLAEM--LQKDCAPNVVTFNVLVSFFCQK-GLMDEA 511
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNY 176
+ ++++ + GC P L+ + L+ C S+ ++L + S G PD T +
Sbjct: 512 IELVEQMMEHGCTP----NLITYNTLLDGITNDCNSEEALELLHGLVSNGVSPDIVTYSS 567
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ L D++ EA K+ + P Y+ ++ A+ T+ A++ MV N
Sbjct: 568 IIGVLSREDRVEEAIKMFHIVQDLGMRPKAVIYNKILLALCKRCNTDGAIDFFAYMVSN- 626
Query: 237 GLMPRQGMVIKVAAALRANREMWK 260
G MP + I + L AN + K
Sbjct: 627 GCMPNELTYITLIEGL-ANEDFLK 649
>gi|449455685|ref|XP_004145582.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Cucumis sativus]
Length = 1113
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 93/208 (44%), Gaps = 2/208 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A ++R S+ V +L EM+ +G P+ T +
Sbjct: 211 ALEVYRRMVSEGLKPSLKTYSALMVALGKKR-DSEMVMVLLKEMEDLGLRPNVYTFTICI 269
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA ++ + M C PDL +Y+++I A+ A + +A E+ +M N G
Sbjct: 270 RVLGRAGKIDEAYEIFRRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKAN-GH 328
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P Q + I + ++ E +E G + ++V+ + R++ A
Sbjct: 329 KPDQVIYITLLDKFNDFGDLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFA 388
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
T M ++G +P + ++ GL G
Sbjct: 389 TFDVMRKQGILPNLHTYNTLICGLLRAG 416
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 57/244 (23%), Positives = 97/244 (39%), Gaps = 3/244 (1%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
SL+T + A +D + + LL E+ PN ++F R IDE E F
Sbjct: 226 SLKTYSALMVALGKKRDSEMVMVLLKEMEDLGLRPNVYTFTICIRVLGRAGKIDEAYEIF 285
Query: 90 IPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+ P + +L L + L A + + +G P I + L + +
Sbjct: 286 RRMDDEGCGPDLVTYTVLIDALCNAGQLENAKELFVKMKANGHKPDQVIYITLLDKFNDF 345
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + +M++ GY PD T LV LC EA M +P+L +
Sbjct: 346 G-DLDTFKEFWSQMEADGYMPDVVTFTILVDVLCKARDFDEAFATFDVMRKQGILPNLHT 404
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ +I + A + DA++++ M ++G+ P + E KAVE E +
Sbjct: 405 YNTLICGLLRAGRIEDALKLLGTME-SVGVQPTAYTYNIFIDYFGKSGETGKAVETFEKM 463
Query: 269 ERKG 272
+ KG
Sbjct: 464 KAKG 467
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 4/192 (2%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
++ D+ +MK++G PD T N L++ ++ E ++ K M S C PD +Y+I
Sbjct: 804 TEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMISRRCKPDAITYNI 863
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
VI +++ + + A++ ++V + P + L + +A+ + E +
Sbjct: 864 VISSLAKSNNLDKALDFFYDLV-SSDFRPTPRTYGPLIDGLAKVGRLEEAMRLFEEMSDY 922
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
GC + +++ G + + A + M G P +K +V+ L G A
Sbjct: 923 GCKPNCAIFNILINGYGKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEA 982
Query: 332 TVVRQRFAELKS 343
F ELKS
Sbjct: 983 LYY---FNELKS 991
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 1/161 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
++ G PD T N ++ + Q+ EA +L M C PD+ + +I ++ A +
Sbjct: 498 LRENGLAPDSVTYNMMMKCYSKVGQVDEAVNLLSEMIRNGCEPDVIVVNSLIDSLYKAGR 557
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A +M M +M L P + + L + KA+E+ E + K C +
Sbjct: 558 VDEAWQMFDRMK-DMKLSPTVVTYNTLLSGLGKEGRVQKAIELFESMIEKKCSPNTISFN 616
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++ + E LA K MT P + V+ GL
Sbjct: 617 TLLDCFCKNDEVELALKMFSKMTVMDCKPDVLTYNTVIYGL 657
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 45/91 (49%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
+ + ++ + +MK+ G P+ CN + SL + +L EA + G+ P
Sbjct: 446 YFGKSGETGKAVETFEKMKAKGIVPNIVACNASLYSLAEMGRLREAKTMFNGLRENGLAP 505
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
D +Y++++ S + ++AV ++ EM+ N
Sbjct: 506 DSVTYNMMMKCYSKVGQVDEAVNLLSEMIRN 536
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 71/164 (43%), Gaps = 11/164 (6%)
Query: 82 IDEMLESFIPL-----RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
+D+ L+ F L RP R Y L+ L + L A+ + + GC P
Sbjct: 874 LDKALDFFYDLVSSDFRPTPR---TYGPLID-GLAKVGRLEEAMRLFEEMSDYGCKPNCA 929
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
I +L + + + +++ + M + G PD + LV LC ++ EA
Sbjct: 930 IFNILINGY-GKIGDTETACQLFKRMVNEGIRPDLKSYTILVDCLCLAGRVDEALYYFNE 988
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+ S PD +Y+ +I + +++ +A+ + EM N G++P
Sbjct: 989 LKSTGLDPDFIAYNRIINGLGKSQRMEEALALYNEM-RNRGIVP 1031
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 24/112 (21%), Positives = 48/112 (42%), Gaps = 5/112 (4%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L R +P +R+L +R + + D K +G P + N L+ L
Sbjct: 744 VLNGICREDSFLIPLVRVLCKH---KRELYAYQIFDKF--TKKLGISPTLASYNCLIGEL 798
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ +A + K M + C PD ++++++ + K + E+ KEM+
Sbjct: 799 LEVHYTEKAWDLFKDMKNVGCAPDAFTFNMLLAVHGKSGKITELFELYKEMI 850
>gi|357154512|ref|XP_003576808.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Brachypodium distachyon]
Length = 801
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 97/219 (44%), Gaps = 20/219 (9%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
LALA+ R + SGC+P ++L L +R + + EM G PD L
Sbjct: 197 LALALYNRMVSSGCLPNSTTYIVLMDG-LCKRGMAVDALKMFDEMLERGIVPDVKIYTVL 255
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA---VEMMKEMVL 234
+SSLC ++ +A ++L M C PD +Y++ + + A + ++A E++++
Sbjct: 256 LSSLCNEGRIEDAGRLLCSMKENGCPPDEVTYTVFLSGLCKAGRVDEAFHRFELLQDGGF 315
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+GL+ ++ + A R + + EM+ K Y +++ R +
Sbjct: 316 TLGLIGYSCLIDGLFQAGRFDEGLSYYTEMLG----KSISPDITLYTILI------RRFA 365
Query: 295 LAGKT------VMGMTERGFIPYIKVRQKVVEGLAGVGE 327
AG+T + M ++GF+P +++ L VG
Sbjct: 366 EAGRTKDAFLLLDEMKDKGFVPDTFCYNTLLKALFDVGN 404
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 6/101 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
LV +C Q+++A K+L+G+ + VPD+ +Y+ +I + A+ + A+ + KE+ L
Sbjct: 513 LVDGMCQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLK- 571
Query: 237 GLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
G+ P + G +I RA+RE + L G P
Sbjct: 572 GISPDEITYGTLID--GLWRAHRENDATMLFQNILRSGGFP 610
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 59/126 (46%), Gaps = 5/126 (3%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS V ++ I G PD T N L++ LC L A ++ K + PD
Sbjct: 518 CQSGQVLKAYKLLRGIIESGVVPDVVTYNTLINGLCKAKNLDGALRLFKELQLKGISPDE 577
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-I 265
+Y +I + A + NDA M+ + +L G P + + +L +++ +A+ + +
Sbjct: 578 ITYGTLIDGLWRAHRENDAT-MLFQNILRSGGFPSLPIYNTMMRSLCRMKKLSQAINLWL 636
Query: 266 EFLERK 271
++L +K
Sbjct: 637 DYLPKK 642
>gi|125544747|gb|EAY90886.1| hypothetical protein OsI_12495 [Oryza sativa Indica Group]
Length = 742
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
AL +Q+ + G P QI + ++ CQ+ V L M + G+ PD T N
Sbjct: 270 ALGYIQQEIADGFEP-DQITY---NTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL- 234
+V+ LC QL EA +L M C+PD+ +++ +I A+ T + +A+++ +++ +
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385
Query: 235 ---------------------------------NMGLMPRQGMVIKVAAALRANREMWKA 261
N G P + + L + ++ KA
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+++++ +E GCP Y +++G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDG 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTC 174
LAL + + SGC P + + ++ C + D+L +M+S G T
Sbjct: 409 LALRLFEEMKNSGCTPDE----VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ LC ++ EA +V M + +++ +I + +K +DA E++ +M+
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI- 523
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ GL P + ++ KA +++E + G + Y ++ G +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+A K + GM +G P K V++ L
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSL 611
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN----HRIKVIDEMLESFIPLRPRSRP 98
DA Y Q E+ FE N +F++ QN H +KV+D M++ P
Sbjct: 269 DALGYIQ-QEIADGFEPDQITYN--TFVNGLCQNDHVGHALKVMDVMVQE------GHDP 319
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD 157
+ ++ L L A IL + + GC+P + L+++ R + D
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE--ALD 377
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ ++ G PD T N L+++LC + A ++ + M ++ C PD +Y+ +I +
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 437
Query: 218 TARKTNDAVEMMKEM 232
+ K A++++K+M
Sbjct: 438 SLGKLGKALDLLKDM 452
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ + + D ++ +M S G P+ T N +++ C + +AA +L+ M++
Sbjct: 500 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y +I + A +T A+++++ M + G+ P V +L +
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIR 618
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ + + G P Y++V G C A ++ M ++GFIP + +
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678
Query: 319 VEGLAGVG 326
EGL +G
Sbjct: 679 AEGLLNLG 686
>gi|115454009|ref|NP_001050605.1| Os03g0597200 [Oryza sativa Japonica Group]
gi|28875991|gb|AAO60000.1| putative pentatricopeptide repeat protein [Oryza sativa Japonica
Group]
gi|108709658|gb|ABF97453.1| DEAD/DEAH box helicase family protein, putative, expressed [Oryza
sativa Japonica Group]
gi|113549076|dbj|BAF12519.1| Os03g0597200 [Oryza sativa Japonica Group]
Length = 742
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
AL +Q+ + G P QI + ++ CQ+ V L M + G+ PD T N
Sbjct: 270 ALGYIQQEIADGFEP-DQITY---NTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL- 234
+V+ LC QL EA +L M C+PD+ +++ +I A+ T + +A+++ +++ +
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385
Query: 235 ---------------------------------NMGLMPRQGMVIKVAAALRANREMWKA 261
N G P + + L + ++ KA
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+++++ +E GCP Y +++G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDG 470
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 89/208 (42%), Gaps = 8/208 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTC 174
LAL + + SGC P + + ++ C + D+L +M+S G T
Sbjct: 409 LALRLFEEMKNSGCTPDE----VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ LC ++ EA +V M + +++ +I + +K +DA E++ +M+
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFELINQMI- 523
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ GL P + ++ KA +++E + G + Y ++ G +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+A K + GM +G P K V++ L
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSL 611
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN----HRIKVIDEMLESFIPLRPRSRP 98
DA Y Q E+ FE N +F++ QN H +KV+D M++ P
Sbjct: 269 DALGYIQ-QEIADGFEPDQITYN--TFVNGLCQNDHVGHALKVMDVMVQE------GHDP 319
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD 157
+ ++ L L A IL + + GC+P + L+++ R + D
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE--ALD 377
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ ++ G PD T N L+++LC + A ++ + M ++ C PD +Y+ +I +
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 437
Query: 218 TARKTNDAVEMMKEM 232
+ K A++++K+M
Sbjct: 438 SLGKLGKALDLLKDM 452
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ + + D ++ +M S G P+ T N +++ C + +AA +L+ M++
Sbjct: 500 NTLIDGLCKDKKIDDAFELINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y +I + A +T A+++++ M + G+ P V +L +
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIR 618
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ + + G P Y++V G C A ++ M ++GFIP + +
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678
Query: 319 VEGLAGVG 326
EGL +G
Sbjct: 679 AEGLLNLG 686
>gi|302806475|ref|XP_002984987.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
gi|300147197|gb|EFJ13862.1| hypothetical protein SELMODRAFT_20977 [Selaginella moellendorffii]
Length = 471
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 91/206 (44%), Gaps = 37/206 (17%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLAL 120
+PN ++ + R K ++E ++ +R R P + Y+ L+ L L + A
Sbjct: 54 DPNVVTYTALIAAFARAKKLEEAMKLLEEMRERGCPPNLVTYNVLVD-ALCKLSMVGAAQ 112
Query: 121 AILQRTLRSGCVP-----------------VPQIRLLLS--------------SAWLERR 149
++++ + G P V R LL SA ++
Sbjct: 113 DVVKKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGL 172
Query: 150 CQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+SQ ++L EMK+ G PD T + L+ LC D++ EA ++L+ M+ + C PD+
Sbjct: 173 CKSQKFLEAKEVLEEMKASGVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDV 232
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
YS +I A + K +A + ++EM
Sbjct: 233 VVYSSIIHAFCKSGKLLEAQKTLQEM 258
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 62/301 (20%), Positives = 123/301 (40%), Gaps = 10/301 (3%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAY 102
+A D ELL + A P+ F+ +D ++ + P +
Sbjct: 2 NAGDLHAALELLEEMKSAGFAPDAFTHTPIITAMANAGDLDGAMDHLRSMG--CDPNVVT 59
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DIL 159
L L A+ +L+ GC P L+ + ++ C+ V D++
Sbjct: 60 YTALIAAFARAKKLEEAMKLLEEMRERGCPP----NLVTYNVLVDALCKLSMVGAAQDVV 115
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M G+ P+ T N LV C + +A K+L M + P++ +YS +I + +
Sbjct: 116 KKMIEGGFAPNVMTFNSLVDGFCKRGNVDDARKLLGIMVAKGMRPNVVTYSALIDGLCKS 175
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+K +A E+++EM + G+ P + L ++ +A +M+ + GC
Sbjct: 176 QKFLEAKEVLEEMKAS-GVTPDAFTYSALIHGLCKADKIEEAEQMLRRMAGSGCTPDVVV 234
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
Y ++ + + + A KT+ M ++ P + V++GL +G+ A V+ +
Sbjct: 235 YSSIIHAFCKSGKLLEAQKTLQEMRKQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQ 294
Query: 340 E 340
E
Sbjct: 295 E 295
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/152 (28%), Positives = 72/152 (47%), Gaps = 7/152 (4%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R P + + L L + A IL + SG V +P + + S + C+S
Sbjct: 260 KQRKSPDVVTYNTVIDGLCKLGKIAEAQVILDQMQESGDV-LPDV--VTYSTVINGLCKS 316
Query: 153 QSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ + +L M G +PD T ++ LC +L EA +L+GM A C P++ +Y
Sbjct: 317 DMLVEAQKLLDRMCKAGCNPDVVTYTTIIDGLCKCGRLEEAEYLLQGMKRAGCAPNVVTY 376
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ +I + ARK ++A +M+EM N G P
Sbjct: 377 TTLISGLCKARKVDEAERVMEEM-RNAGCPPN 407
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 64/116 (55%), Gaps = 9/116 (7%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLV 178
+LQ R+GC P ++ + + C+++ V + ++ EM++ G P+ T N +V
Sbjct: 360 LLQGMKRAGCAP----NVVTYTTLISGLCKARKVDEAERVMEEMRNAGCPPNLVTYNTMV 415
Query: 179 SSLCAIDQLVEAAKVLKGMSS--AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ LC ++ EA ++++ M AEC PD +Y ++ A+ ++ +A +++++M
Sbjct: 416 NGLCVSGRIKEAQQLVQRMKDGRAECSPDAATYRTIVNALMSSDLVQEAEQLLEQM 471
>gi|15237384|ref|NP_197167.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75171647|sp|Q9FMD3.1|PP389_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g16640, mitochondrial; Flags: Precursor
gi|10176973|dbj|BAB10191.1| unnamed protein product [Arabidopsis thaliana]
gi|110737318|dbj|BAF00605.1| hypothetical protein [Arabidopsis thaliana]
gi|332004938|gb|AED92321.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 504
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ + ++ C+S+ V D+L M+ G PD T N L+S LC+ + +A +++
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMV 244
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M+ E PD+ +++ +I A + ++A E +EM+ L P + L
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI-RRSLDPDIVTYSLLIYGLCM 303
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A EM F+ KGC Y +++ G + ++ K M++RG +
Sbjct: 304 YSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363
Query: 315 RQKVVEGLAGVGEWKLATVVRQR 337
+++G G+ +A + +R
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRR 386
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 131 CVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
C P+P I RLL + + +++ V + +M+ +G + TCN L++ C Q
Sbjct: 75 CRPLPSIADFSRLLSAISKMKKY---DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A L M P + ++ ++ + DA+ M +MV MG P +
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV-GMGYKPNVVIYN 190
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L ++++ A++++ +E+ G Y ++ G + A + V MT+R
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 250
Query: 307 GFIPYIKVRQKVVEGLAGVG 326
P + +++ G
Sbjct: 251 EIYPDVFTFNALIDACVKEG 270
>gi|380875521|gb|AFF27500.1| PPR domain-containing protein [Oryza sativa Indica Group]
Length = 742
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 87/205 (42%), Gaps = 41/205 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
AL +Q+ + G P QI + ++ CQ+ V L M + G+ PD T N
Sbjct: 270 ALGYIQQEIADGFEP-DQITY---NTFVNGLCQNDHVGHALKVMDVMVQEGHDPDVFTYN 325
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL- 234
+V+ LC QL EA +L M C+PD+ +++ +I A+ T + +A+++ +++ +
Sbjct: 326 IVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEEALDLARQVTVK 385
Query: 235 ---------------------------------NMGLMPRQGMVIKVAAALRANREMWKA 261
N G P + + L + ++ KA
Sbjct: 386 GVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLCSLGKLGKA 445
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+++++ +E GCP Y +++G
Sbjct: 446 LDLLKDMESTGCPRSTITYNTIIDG 470
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 88/208 (42%), Gaps = 8/208 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTC 174
LAL + + SGC P + + ++ C + D+L +M+S G T
Sbjct: 409 LALRLFEEMKNSGCTPDE----VTYNTLIDNLCSLGKLGKALDLLKDMESTGCPRSTITY 464
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ LC ++ EA +V M + +++ +I + +K +DA ++ +M+
Sbjct: 465 NTIIDGLCKKMRIEEAEEVFDQMDLQGISRNAITFNTLIDGLCKDKKIDDAFGLINQMI- 523
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ GL P + ++ KA +++E + G + Y ++ G +
Sbjct: 524 SEGLQPNNITYNSILTHYCKQGDIKKAADILETMTANGFEVDVVTYGTLINGLCKAGRTQ 583
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+A K + GM +G P K V++ L
Sbjct: 584 VALKVLRGMRIKGMRPTPKAYNPVLQSL 611
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 16/195 (8%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN----HRIKVIDEMLESFIPLRPRSRP 98
DA Y Q E+ FE N +F++ QN H +KV+D M++ P
Sbjct: 269 DALGYIQ-QEIADGFEPDQITYN--TFVNGLCQNDHVGHALKVMDVMVQE------GHDP 319
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD 157
+ ++ L L A IL + + GC+P + L+++ R + D
Sbjct: 320 DVFTYNIVVNCLCKNGQLEEAKGILNQMVDRGCLPDITTFNTLIAALCTGNRLEE--ALD 377
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ ++ G PD T N L+++LC + A ++ + M ++ C PD +Y+ +I +
Sbjct: 378 LARQVTVKGVSPDVYTFNILINALCKVGDPHLALRLFEEMKNSGCTPDEVTYNTLIDNLC 437
Query: 218 TARKTNDAVEMMKEM 232
+ K A++++K+M
Sbjct: 438 SLGKLGKALDLLKDM 452
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 86/188 (45%), Gaps = 5/188 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ + + D ++ +M S G P+ T N +++ C + +AA +L+ M++
Sbjct: 500 NTLIDGLCKDKKIDDAFGLINQMISEGLQPNNITYNSILTHYCKQGDIKKAADILETMTA 559
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y +I + A +T A+++++ M + G+ P V +L +
Sbjct: 560 NGFEVDVVTYGTLINGLCKAGRTQVALKVLRGMRIK-GMRPTPKAYNPVLQSLFRRNNIR 618
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ + + G P Y++V G C A ++ M ++GFIP + +
Sbjct: 619 DALSLFREMAEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFMLEMVDKGFIPEFSSFRML 678
Query: 319 VEGLAGVG 326
EGL +G
Sbjct: 679 AEGLLNLG 686
>gi|224086515|ref|XP_002307901.1| predicted protein [Populus trichocarpa]
gi|222853877|gb|EEE91424.1| predicted protein [Populus trichocarpa]
Length = 724
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 96/213 (45%), Gaps = 10/213 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL ++ GC P +L + ++ Q + IL EM + G+ + N L+
Sbjct: 401 ALELVNDMDAKGCKPNLNTYTILIDGFC-KKGQLEEAGLILREMLTKGFSLNTVGYNALI 459
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S+LC ++ EA + MSS C PD+ +++ +I + + DA+ + ++MVL G+
Sbjct: 460 SALCKHGKIHEALDMFGEMSSKGCKPDIFTFNSLIFGLCRVDEMEDALALYRDMVLE-GV 518
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+ + A E+ +A++++ + +GCP+ E+ G ++ A +
Sbjct: 519 IANSVTFNTLIHAFLRRGEIQEALKLVNDMLFRGCPLD----EITYNGLIKALCKTGAVE 574
Query: 299 TVMGMTE----RGFIPYIKVRQKVVEGLAGVGE 327
+G+ E +G P I ++ G G+
Sbjct: 575 KGLGLFEEMIRKGLTPSIITCNILINGFCTAGK 607
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 91/197 (46%), Gaps = 17/197 (8%)
Query: 80 KVIDEM-LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
K++D M L+ F P + Y YL+ + L + A A+L + VP P +
Sbjct: 301 KLVDRMILKGFTP------NDMTYGYLM-HGLCKTCRIDEAQALLSK------VPGPNVV 347
Query: 139 LL--LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
L + ++ +++ A + +M + GY PD T + LV+ LC A +++
Sbjct: 348 HFNTLVNGFVRNGRLNEATAFVYDKMINNGYVPDVFTFSTLVNGLCKKGLFGSALELVND 407
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + C P+L +Y+I+I + +A +++EM L G + +AL +
Sbjct: 408 MDAKGCKPNLNTYTILIDGFCKKGQLEEAGLILREM-LTKGFSLNTVGYNALISALCKHG 466
Query: 257 EMWKAVEMIEFLERKGC 273
++ +A++M + KGC
Sbjct: 467 KIHEALDMFGEMSSKGC 483
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 4/138 (2%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+++ +M S G P+ T ++ +LC ++++ A +L+ M+ CVP+ Y +I A
Sbjct: 195 SNVFYDMLSKGVSPNDYTFGLVMKALCMVNEVDNACLLLRDMTKHGCVPNSMIYQTLIDA 254
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCP 274
+S + ++A+++++EM L MG P V R NR + + ++++ + KG
Sbjct: 255 LSKRDRVDEALKLLEEMFL-MGCPPDVNTFNTVIYGFCRLNR-VLEGAKLVDRMILKGFT 312
Query: 275 IGFQGYEVVVEG-CLECR 291
Y ++ G C CR
Sbjct: 313 PNDMTYGYLMHGLCKTCR 330
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 79/192 (41%), Gaps = 9/192 (4%)
Query: 119 ALAILQRTLRSGCVPVPQI--RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL +L+ GC P ++ L R + + D M G+ P+ T Y
Sbjct: 264 ALKLLEEMFLMGCPPDVNTFNTVIYGFCRLNRVLEGAKLVD---RMILKGFTPNDMTYGY 320
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ LC ++ EA +L + P++ ++ ++ + N+A + + ++N
Sbjct: 321 LMHGLCKTCRIDEAQALLSKVPG----PNVVHFNTLVNGFVRNGRLNEATAFVYDKMINN 376
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G +P + L A+E++ ++ KGC Y ++++G + + A
Sbjct: 377 GYVPDVFTFSTLVNGLCKKGLFGSALELVNDMDAKGCKPNLNTYTILIDGFCKKGQLEEA 436
Query: 297 GKTVMGMTERGF 308
G + M +GF
Sbjct: 437 GLILREMLTKGF 448
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 74/167 (44%), Gaps = 14/167 (8%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+K++++ML PL +I Y+ L+ L + L + + +R G P
Sbjct: 542 LKLVNDMLFRGCPL-----DEITYNGLIK-ALCKTGAVEKGLGLFEEMIRKGLTP----S 591
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ + + C + V + L M+ + G+ PD T N L++ LC ++ EA + +
Sbjct: 592 IITCNILINGFCTAGKVHNALEFMRDMIHRGFSPDIVTYNSLINGLCKRGRIQEALNLFE 651
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+ + PD +Y+ +I + +DA ++ V N G +P
Sbjct: 652 KLQAEGIQPDSITYNTLICWLCREGAFDDACFLLYRGVEN-GFVPND 697
>gi|224713522|gb|ACN62068.1| PPR-814b [Zea mays]
Length = 814
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 57/235 (24%), Positives = 95/235 (40%), Gaps = 49/235 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ L+ C+++ DILL +G P
Sbjct: 125 HRPELALAFFGQLLRTGL----RVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C PD+ +YS VI N A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACD 240
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P F Y VV
Sbjct: 241 LFKEMV------------------------------------QRGIPPDFVTYSSVVHAL 264
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ R A + M +G +P ++ G + G+WK A V F E++
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMR 316
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ D+ M G PD T N L+ + L +A + M PD+ +Y VI
Sbjct: 377 DMTDLFDLMLGDGIAPDIYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 436
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ K +DA+E +M+ + G+ P + + + + KA E+I + G
Sbjct: 437 AALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYHCLIQGFCTHGSLLKAKELISEIMNNGM 495
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++ + ++ + + +T G P V +++G VG+ + A
Sbjct: 496 HLDIVFFSSIINNLCKLGR-VMDAQNIFDLTVNVGLHPTAVVYSMLMDGYCLVGKMEKA 553
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 64/147 (43%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HP + L+ C + ++ +A +V M SA P+
Sbjct: 512 LGRVMDAQNIFDLTV---NVGLHPTAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
Y ++ + ++ + + +EM L G+ P + I + A R + V+
Sbjct: 569 DVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 627
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 628 HEMTE-SGIAMNKCTYNIVLRGLFKNR 653
>gi|224126121|ref|XP_002329666.1| predicted protein [Populus trichocarpa]
gi|222870547|gb|EEF07678.1| predicted protein [Populus trichocarpa]
Length = 821
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/263 (21%), Positives = 115/263 (43%), Gaps = 13/263 (4%)
Query: 78 RIKVIDEMLESFIPLRPRSRP--KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R ++DE E F+ L+ + + Y+ LL AL+I++ + C P
Sbjct: 292 REGLLDEAKEFFVGLKSQGYAPGTVTYNALLQ-VFGKAGIYSEALSIMKEMEDNNCPPDA 350
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L +A++ + A ++ M G P+ T ++++ Q+ +A +
Sbjct: 351 VTYNELVAAYVRAGFYEEGAA-LIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYD 409
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + C P++ +Y+ ++G + ++ + ++++ +M ++ G P + + ++ N
Sbjct: 410 QMKESGCAPNVCTYNAILGMLGKKSQSEEMMKILCDMKVD-GCAPNR-ITWNTMLSMCGN 467
Query: 256 REMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
+ M K V+ + F E K C GF+ + ++ C I A K M E GF P
Sbjct: 468 KGMHKYVKRV-FQEMKSC--GFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPS 524
Query: 312 IKVRQKVVEGLAGVGEWKLATVV 334
+ ++ LA G+W+ A V
Sbjct: 525 VATYNALLNALARRGDWRTAESV 547
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 5/212 (2%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPL 92
T E V A V A Y++ L+ + E PN ++ + R +D+ L + +
Sbjct: 352 TYNELVAAYVRAGFYEEGAALIDTMTENGIKPNAVTYTTMINAYGRAAQVDKALSLYDQM 411
Query: 93 RPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
+ P + Y+ +L + + + IL GC P +I + +
Sbjct: 412 KESGCAPNVCTYNAILGMLGKKSQSEEM-MKILCDMKVDGCAP-NRITWNTMLSMCGNKG 469
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ V + EMKS G+ PD T N L+++ ++A K+ M A P + +Y+
Sbjct: 470 MHKYVKRVFQEMKSCGFEPDRDTFNTLITASGRCGSDIDAEKIYDEMLEAGFTPSVATYN 529
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
++ A++ A ++K+M N G P +
Sbjct: 530 ALLNALARRGDWRTAESVIKDMK-NKGFKPSE 560
>gi|302756087|ref|XP_002961467.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
gi|300170126|gb|EFJ36727.1| hypothetical protein SELMODRAFT_77006 [Selaginella moellendorffii]
Length = 500
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 47/180 (26%), Positives = 80/180 (44%), Gaps = 7/180 (3%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTAR 220
M G HPD T L+ C + A ++ + M S C PD Y ++I
Sbjct: 37 MCDAGIHPDVVTFTALIRGFCKNRMVERAWEIFQEMIKSNRCQPDCFLYGVLIDGYCKEL 96
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANR--EMWKAVEMIEFLERKGCPIGF 277
+ + A+E+++EM + + P + + L R+NR E WK ++ E + R+GC
Sbjct: 97 RMDRALELLREMRVERRIQPDVVIYNSIVDGLCRSNRFLEAWKFLD--ETMVRQGCSPTV 154
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
Y ++ G + ++ LA M ER P I +++GL+ G + VVR+
Sbjct: 155 VTYTSLIRGACKAKKMKLAMTIWNAMLERKIQPTIVSYSVIIDGLSKAGRVYDAYRVVRE 214
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 72/173 (41%), Gaps = 11/173 (6%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK G P+ T L+ + C D+ E A L C D+ Y+ V+ + R+
Sbjct: 250 MKRSGAFPNQRTYATLIDTFCRNDR-TETALGLFDHIRDYCPLDVAMYTAVVSGLCRERR 308
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQG 279
+DA + +EM L + + A R+ R E ++ +E E + GC
Sbjct: 309 LDDARALFREMRLAGVSADTHAYNVLLHGAFRSGRSEEAFRILE--ELGDDPGCVANLLT 366
Query: 280 YEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V+ GC C E +G + M +RG P +++ L G GE + A
Sbjct: 367 YNTVIAGC--CLE---SGMVLFYEMRQRGIAPDFATYSALIDRLLGSGEIRRA 414
>gi|302781562|ref|XP_002972555.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
gi|300160022|gb|EFJ26641.1| hypothetical protein SELMODRAFT_97527 [Selaginella moellendorffii]
Length = 564
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/179 (24%), Positives = 81/179 (45%), Gaps = 6/179 (3%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S + ++ E+ G+HPD T N L+ SLC L EA ++ MSS CVP++
Sbjct: 48 CKSNDLGAGMELFEELVERGHHPDVVTYNTLIDSLCKAGDLEEARRLHGDMSSRGCVPNV 107
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMV-LNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+YS++I + + ++A E+++EM + ++P L +A E++
Sbjct: 108 VTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQSMTAEACELM 167
Query: 266 EFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
L + + +++G +C + A M G++P + +V GL
Sbjct: 168 RSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVNGL 226
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 50/82 (60%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ DIL M ++G P+ T N LV LC ++ EA + L+ M S+ CVPD +Y
Sbjct: 341 QVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMVSSGCVPDSITYG 400
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
++ A+ A +T+DA++++ E+
Sbjct: 401 SLVYALCRASRTDDALQLVSEL 422
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 92/213 (43%), Gaps = 12/213 (5%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L R+LR G + V + S+ ++ C Q + +M + GY P+ T N LV+
Sbjct: 166 LMRSLRDGSLRVSPDTVTFST-LIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC D++ A +++ M PD+ +YS+++ A A + ++A+E++ M + G
Sbjct: 225 GLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHGMA-SRGCT 283
Query: 240 P------RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
P + I +A A +A +A + E + K + +++G + +
Sbjct: 284 PNVLVPDKVTFNILIAGACKAGN-FEQASALFEEMVAKNLQPDVMTFGALIDGLCKAGQV 342
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + M G P + +V GL G
Sbjct: 343 EAARDILDLMGNLGVPPNVVTYNALVHGLCKSG 375
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 46/197 (23%), Positives = 82/197 (41%), Gaps = 12/197 (6%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEM--KSIGYHPDCGTCNYLVSSLCAI 184
GCVP ++ S + C+ + + ++ EM KS P+ T N + LC
Sbjct: 102 GCVP----NVVTYSVLINGLCKVGRIDEARELIQEMTRKSCDVLPNIITYNSFLDGLCKQ 157
Query: 185 DQLVEAAKVLKGM--SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
EA ++++ + S PD ++S +I + + ++A + +M+ G +P
Sbjct: 158 SMTAEACELMRSLRDGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAG-GYVPNV 216
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ L +M +A MIE + KG Y V+V+ + A + + G
Sbjct: 217 ITYNALVNGLCKADKMERAHAMIESMVDKGVTPDVITYSVLVDAFCKASRVDEALELLHG 276
Query: 303 MTERGFIPYIKVRQKVV 319
M RG P + V KV
Sbjct: 277 MASRGCTPNVLVPDKVT 293
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 61/136 (44%), Gaps = 7/136 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ L S +E CQ L EM S G PD T LV +LC + +A +++
Sbjct: 368 VHGLCKSGRIEEACQ------FLEEMVSSGCVPDSITYGSLVYALCRASRTDDALQLVSE 421
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+ S PD +Y+I++ + + KT A+ +++EMV G P + L +
Sbjct: 422 LKSFGWDPDTVTYNILVDGLWKSGKTEQAITVLEEMV-GKGHQPDSFTFAACFSGLHRSG 480
Query: 257 EMWKAVEMIEFLERKG 272
+ +E++ + KG
Sbjct: 481 NLAGTMELLRVVLAKG 496
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 61/282 (21%), Positives = 121/282 (42%), Gaps = 31/282 (10%)
Query: 28 MSSLRTLEETVRAAVDAKDYQQIPELL---GSFEEACQN----------PNPFSF---LS 71
M SLR + ++R + D + + + L G +EAC PN ++ ++
Sbjct: 167 MRSLR--DGSLRVSPDTVTFSTLIDGLCKCGQIDEACSVFDDMIAGGYVPNVITYNALVN 224
Query: 72 NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC 131
+ +++ M+ES + + + I Y L+ ++ + AL +L GC
Sbjct: 225 GLCKADKMERAHAMIESMVD-KGVTPDVITYSVLVDAFCKA-SRVDEALELLHGMASRGC 282
Query: 132 VP---VPQ---IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
P VP +L++ A + S + EM + PD T L+ LC
Sbjct: 283 TPNVLVPDKVTFNILIAGACKAGNFEQASA--LFEEMVAKNLQPDVMTFGALIDGLCKAG 340
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
Q+ A +L M + P++ +Y+ ++ + + + +A + ++EMV + G +P
Sbjct: 341 QVEAARDILDLMGNLGVPPNVVTYNALVHGLCKSGRIEEACQFLEEMV-SSGCVPDSITY 399
Query: 246 IKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ AL RA+R A++++ L+ G Y ++V+G
Sbjct: 400 GSLVYALCRASR-TDDALQLVSELKSFGWDPDTVTYNILVDG 440
>gi|356574070|ref|XP_003555175.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Glycine max]
Length = 720
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/209 (24%), Positives = 92/209 (44%), Gaps = 17/209 (8%)
Query: 106 LSYTLQSLHPL---PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
L+Y L+ L LAL +R GC P + +L +E Q A +L +M
Sbjct: 199 LNYLLEVLFATNRNELALHQFRRMNNKGCDPNSKTFEILVKGLIESG-QVDEAATVLEQM 257
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
PD G ++ C +++ EA K+ K M ++ VPD Y +++ +
Sbjct: 258 LKHKCQPDLGFYTCIIPLFCRENKVEEAVKLFKMMKDSDFVPDSFIYEVLVRCFCNNLQL 317
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE----RKGCPIGFQ 278
+ AV ++ EM+ +G+ P+ +++ + + E+ K E I FLE + P
Sbjct: 318 DSAVSLINEMI-EIGMPPKHNVLVDM---MNCFCELGKINEAIMFLEDTQVHETAP---- 369
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERG 307
+ ++EGC E + A + M+ER
Sbjct: 370 -FNTLLEGCCNAGEVLAANVLLETMSERN 397
>gi|302775073|ref|XP_002970953.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
gi|300161664|gb|EFJ28279.1| hypothetical protein SELMODRAFT_94034 [Selaginella moellendorffii]
Length = 577
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 62/237 (26%), Positives = 104/237 (43%), Gaps = 6/237 (2%)
Query: 98 PKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSV 155
P IA Y+ LL+ L + L A+ +L++ + +GC P V L+ E+R S
Sbjct: 19 PTIATYNALLN-GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR--SFEA 75
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ EM G D L+ L ++ +A+ V K M+S CVPD+ + S +I
Sbjct: 76 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 135
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+S A + AV + K M GL P + + + L R+M A+EM+ +++ C
Sbjct: 136 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 194
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y V+++G + + A M E G P + ++ G G A+
Sbjct: 195 DTITYNVLIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAAS 251
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 103/236 (43%), Gaps = 6/236 (2%)
Query: 98 PKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSV 155
P IA Y+ LL+ L + L A+ +L++ + +GC P V L+ E+R S
Sbjct: 300 PTIATYNALLN-GLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKR--SFEA 356
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ EM G D L+ L ++ +A+ V K M+S CVPD+ + S +I
Sbjct: 357 YKLFKEMALRGLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMIDG 416
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+S A + AV + K M GL P + + + L R+M A+EM+ +++ C
Sbjct: 417 LSKAGRIGAAVRIFKSMEAR-GLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTP 475
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++++G + + A M E G P + ++ G G A
Sbjct: 476 DTITYNILIDGLCKSGDVEAARAFFDEMLEAGCKPDVYTYNILISGFCKAGNTDAA 531
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 107/243 (44%), Gaps = 11/243 (4%)
Query: 82 IDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRL 139
DEMLE+ +P + Y+ L+S ++ + + ++ Q T +GC + +
Sbjct: 219 FDEMLEA------GCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTA 272
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ WL + + + ++ ++ + G P T N L++ LC + +L EA +L+ +
Sbjct: 273 IVD--WLAKNKKIEEAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 330
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C PD+ +Y+ +I + +++ +A ++ KEM L GL + L ++
Sbjct: 331 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALR-GLALDTVCYTALIRELLQTGKIP 389
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A + + + GC +++G + A + M RG P V ++
Sbjct: 390 QASSVYKTMTSHGCVPDVVTLSTMIDGLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 449
Query: 320 EGL 322
GL
Sbjct: 450 HGL 452
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 75/184 (40%), Gaps = 3/184 (1%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+++ + ++L +MK PD T N L+ LC + A M
Sbjct: 165 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNVLIDGLCKSGDVEAARAFFDEMLE 224
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
A C PD+ +Y+I+I A T+ A + + G + L N+++
Sbjct: 225 AGCKPDVYTYNILISGFCKAGNTDAASHSLAQETTINGCTIDIHTYTAIVDWLAKNKKIE 284
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+AV ++E + GC Y ++ G + A + + + G P + ++
Sbjct: 285 EAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLI 344
Query: 320 EGLA 323
+GL
Sbjct: 345 DGLG 348
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 68/157 (43%), Gaps = 1/157 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T N L++ LC + +L EA +L+ + C PD+ +Y+ +I + +++ +A
Sbjct: 16 GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEA 75
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++ KEM L GL + L ++ +A + + + GC +++
Sbjct: 76 YKLFKEMALR-GLALDTVCYTALIRELLQTGKIPQASSVYKTMTSHGCVPDVVTLSTMID 134
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
G + A + M RG P V ++ GL
Sbjct: 135 GLSKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGL 171
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 43/93 (46%), Gaps = 3/93 (3%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+++ + ++L +MK PD T N L+ LC + A M
Sbjct: 446 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 505
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
A C PD+ +Y+I+I A T+ A + +M
Sbjct: 506 AGCKPDVYTYNILISGFCKAGNTDAACGVFDDM 538
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 83/218 (38%), Gaps = 3/218 (1%)
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149
+ LR + + Y L+ LQ+ +P A ++ + GCVP + L L +
Sbjct: 363 MALRGLALDTVCYTALIRELLQT-GKIPQASSVYKTMTSHGCVP-DVVTLSTMIDGLSKA 420
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ + I M++ G P+ + L+ LC ++ A ++L M A C PD +Y
Sbjct: 421 GRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITY 480
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+I+I + + A EM L G P + + A + + +
Sbjct: 481 NILIDGLCKSGDVEAARAFFDEM-LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMS 539
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
C Y ++ G + R+ A M ERG
Sbjct: 540 SSRCSANVVTYGALISGLCKRRQLTKASLYFQHMKERG 577
>gi|357499785|ref|XP_003620181.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495196|gb|AES76399.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 559
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 88/201 (43%), Gaps = 3/201 (1%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
V +L+ ERR + ++L M G PD T N L+ C + ++ +A +
Sbjct: 282 VYTFNILVDGFCKERRLKE--AKNVLAMMMKQGIKPDVFTYNSLMDRYCLVKEVNKAKHI 339
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
+S P++ SYSI+I +K ++A+ + KEM N ++P + L
Sbjct: 340 FNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCN-NIIPDVVTYNSLIDGLC 398
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
++ A+++++ + +G P Y +++ + + A + M + G P I
Sbjct: 399 KLGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDIC 458
Query: 314 VRQKVVEGLAGVGEWKLATVV 334
+V+GL G + A +V
Sbjct: 459 TYTTLVDGLCKNGRLEDARIV 479
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/216 (19%), Positives = 94/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL +L+R G + P + ++ + ++ C+ + V D+ EM S G PD T N
Sbjct: 196 ALQLLRRV--DGKLVQPNV--VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYN 251
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S C + ++ +A + M P++ +++I++ R+ +A ++ M++
Sbjct: 252 ALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLKEAKNVL-AMMMK 310
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + +E+ KA + + ++G Y +++ G + ++
Sbjct: 311 QGIKPDVFTYNSLMDRYCLVKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDE 370
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M IP + +++GL +G+ A
Sbjct: 371 AMNLFKEMHCNNIIPDVVTYNSLIDGLCKLGKISYA 406
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/160 (20%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
+ +K++DEM + +P KI Y+ +L ++ H + A+A+L + G P
Sbjct: 405 YALKLVDEMHDRGVP-----HDKITYNSILDALCKN-HQVDKAIALLTKMKDEGIQP--- 455
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ + ++ C++ + D + + + GY D ++ C+ E+ +
Sbjct: 456 -DICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCSHGLFDESLDL 514
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L M C+P+ +Y I+I ++ + + A ++++EM+
Sbjct: 515 LSKMEENGCIPNAVTYEIIICSLFDKDENDKAEKLLREMI 554
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 89/196 (45%), Gaps = 6/196 (3%)
Query: 117 PLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTC 174
PL+ ++L + L+ G P V + L+ L+ + Q+ D ++ ++G+H + +
Sbjct: 124 PLSFSVLAKILKMGYEPNVITLTTLIKGLCLKGQIHQALQFHD---KVVALGFHLNKVSY 180
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++ LC + Q A ++L+ + P++ Y+ +I +M + N+A ++ EMV
Sbjct: 181 GTLINGLCKVGQTSAALQLLRRVDGKLVQPNVVMYNTIIDSMCKVKLVNEAFDLYSEMV- 239
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ G+ P + + +M A ++ + + + ++V+G + R
Sbjct: 240 SKGISPDVVTYNALISGFCIVGKMKDATDLFNKMIFENINPNVYTFNILVDGFCKERRLK 299
Query: 295 LAGKTVMGMTERGFIP 310
A + M ++G P
Sbjct: 300 EAKNVLAMMMKQGIKP 315
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 11/234 (4%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS--RPKIA 101
K+ + + + + NPN S+ +IK +DE + F + + +
Sbjct: 330 VKEVNKAKHIFNTISQRGVNPNIHSYSIMIHGFCKIKKVDEAMNLFKEMHCNNIIPDVVT 389
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---I 158
Y+ L+ L L + AL ++ G VP ++ +S L+ C++ V +
Sbjct: 390 YNSLID-GLCKLGKISYALKLVDEMHDRG---VPHDKITYNS-ILDALCKNHQVDKAIAL 444
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +MK G PD T LV LC +L +A V + + + D+ Y+ +I +
Sbjct: 445 LTKMKDEGIQPDICTYTTLVDGLCKNGRLEDARIVFEDLLVKGYILDVNIYTAMIQGFCS 504
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+++++++ +M N G +P + +L E KA +++ + +G
Sbjct: 505 HGLFDESLDLLSKMEEN-GCIPNAVTYEIIICSLFDKDENDKAEKLLREMITRG 557
>gi|242096872|ref|XP_002438926.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
gi|241917149|gb|EER90293.1| hypothetical protein SORBIDRAFT_10g028420 [Sorghum bicolor]
Length = 924
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 65/304 (21%), Positives = 130/304 (42%), Gaps = 15/304 (4%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIP--LRPRSRP 98
A + ++ +LL + NPN F + L + ++ ++ + L+S + L P +R
Sbjct: 571 AGNLEKAEQLLHQMLNSGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNR- 629
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
Y ++ + L S + A+++L ++G VP I L S + + ++V +
Sbjct: 630 --LYGIVI-HNLSSSGHMQAAVSVLSVIEKNGLVPDSLIYGSLISGFCKAADMEKAVG-L 685
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L EM G P N L+ C D + A + + P+ +Y+ +I
Sbjct: 686 LDEMAKKGIEPGISCYNALIDGFCKSDDISHARNIFNSIICKGLPPNCVTYTTLIDGYCK 745
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A DA+++ EM L G+ P + +AA + ++ +A+ + E + +G I
Sbjct: 746 AGDIRDAIDLYNEM-LTEGVAPDAFVYSVLAAGCSNSGDLQQALFITEEMIARGYAI-IS 803
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+ +V G + + K + M ++ +P + + +V GL G+ A + F
Sbjct: 804 SFNTLVHGFCKRGKLQETVKFLHVMMDKDIVPSLLTVENIVIGLGEAGKLSEAHTI---F 860
Query: 339 AELK 342
EL+
Sbjct: 861 VELQ 864
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/184 (22%), Positives = 75/184 (40%), Gaps = 1/184 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+S+ + +L +M + G P+ L+S C A + LK M+ PDL Y+
Sbjct: 468 ESERASGLLEQMIADGLKPNAFVYAPLISGYCREGSFSLACETLKKMTRENLTPDLYCYN 527
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I +S K ++A+E EM L G P + + KA +++ +
Sbjct: 528 SLIIGLSNVGKMDEAIEYYDEM-LEKGFQPNDFTYGGLIHGYSMAGNLEKAEQLLHQMLN 586
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
G Y ++EG + T+ M E+G +P ++ V+ L+ G +
Sbjct: 587 SGLNPNDFIYAQILEGYFKSDNLEKVSSTLKSMLEKGLMPDNRLYGIVIHNLSSSGHMQA 646
Query: 331 ATVV 334
A V
Sbjct: 647 AVSV 650
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 76/172 (44%), Gaps = 1/172 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G PD T +++ LC + +A +L MS A +P++ YS +I
Sbjct: 303 EMEDYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYSTLIDGFMRQG 362
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
++A +++KEM G+ P + + L M +A +++ + + G Y
Sbjct: 363 NADEAFKIVKEMSA-AGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTMTY 421
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+V+EG L A + M + G P + ++ GL +GE + A+
Sbjct: 422 NLVIEGHLRQHNKEEAFLLLNEMRKGGISPNVYTYSIIINGLCQIGESERAS 473
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 81/186 (43%), Gaps = 5/186 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ + I+ EM + G P+ T + L+ LC + ++ A+++LK M+ + D
Sbjct: 360 RQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKIGYMADTM 419
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y++VI +A ++ EM G+ P + L E +A ++E
Sbjct: 420 TYNLVIEGHLRQHNKEEAFLLLNEM-RKGGISPNVYTYSIIINGLCQIGESERASGLLEQ 478
Query: 268 LERKGCPIGFQGYEVVVEGCLECRE--YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ G Y ++ G CRE + LA +T+ MT P + ++ GL+ V
Sbjct: 479 MIADGLKPNAFVYAPLISG--YCREGSFSLACETLKKMTRENLTPDLYCYNSLIIGLSNV 536
Query: 326 GEWKLA 331
G+ A
Sbjct: 537 GKMDEA 542
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 75/180 (41%), Gaps = 1/180 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G PD T + L+ + C + L A KV++ M C ++ +Y+ +IG + A
Sbjct: 234 MEGAGISPDVYTYSTLIEAYCKVRDLESAKKVVEEMRETGCSLNVVTYNTLIGGLCRAGA 293
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+A KEM + GL+P + L +A +++ + G Y
Sbjct: 294 IEEAFGYKKEME-DYGLVPDGFTYGAIINGLCKRGRPDQAKCLLDEMSCAGLMPNVVVYS 352
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+++G + A K V M+ G P ++ GL +G A+ + ++ ++
Sbjct: 353 TLIDGFMRQGNADEAFKIVKEMSAAGVQPNKITYDNLIRGLCKLGRMGRASRILKQMTKI 412
>gi|414586855|tpg|DAA37426.1| TPA: hypothetical protein ZEAMMB73_447866 [Zea mays]
Length = 484
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 93/235 (39%), Gaps = 4/235 (1%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165
S + L +P A A L +G P Q +L+ + R + S ++ EM
Sbjct: 86 SDLMNRLPSVPEAYAFYLHLLDAGVPPEARQFNMLMRD--MIRSGKLASARNVFDEMLRR 143
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T N L+S +C L A + M+ A PD+ +Y I + + DA
Sbjct: 144 GVQPTVVTFNTLMSGMCKASDLNNANALRGLMAKAGIAPDVYTYGAFIQGLCKTGRIQDA 203
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+EM +EM GL P ++ + A ++ +E+ + +G Y +V
Sbjct: 204 MEMFEEMC-ERGLNPNTVVLTTLIDAHCKEGDVTAGLELRWEMATRGVKADLVAYNALVN 262
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
G R+ A V M + G P +++G GE A ++Q ++
Sbjct: 263 GFCRVRDMKAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSD 317
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 62/134 (46%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ DI+ EM+ G PD T L+ C +L A ++ + MS D +Y+ +
Sbjct: 271 KAANDIVEEMRKDGLKPDKVTYTTLIDGCCKEGELDTAMEMKQEMSDEGVALDDVTYTAL 330
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S A ++ DA ++ EM + GL P V A N ++ + ++ ++ KG
Sbjct: 331 ISGLSKAGRSVDAERILCEM-MEAGLQPDNTTYTMVIDAFCKNGDVKTGFKHLKEMQNKG 389
Query: 273 CPIGFQGYEVVVEG 286
G Y VV+ G
Sbjct: 390 KNPGIVTYNVVMNG 403
>gi|224137548|ref|XP_002322585.1| predicted protein [Populus trichocarpa]
gi|222867215|gb|EEF04346.1| predicted protein [Populus trichocarpa]
Length = 243
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 26/203 (12%)
Query: 130 GCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
GC+P V +L++ + R + EM G P+ + N L+S L + +++
Sbjct: 5 GCMPNVLSYNILINGSCKALRIDE--AKQLFDEMSFRGLIPNTASYNTLISGLFQVGRIL 62
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND--------------------AVEM 228
EA ++ K M + C PDL +YSI++ +S N+ +E
Sbjct: 63 EAKELFKDMHAQGCSPDLVTYSILLDGLSKQEMQNNYLNPDLVIYNILIDAMCKSGKLED 122
Query: 229 MKEMVLNM---GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+E+ L + GL+P + + L + +A + +ER GCP Y V+V
Sbjct: 123 ARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSYNVIVR 182
Query: 286 GCLECREYILAGKTVMGMTERGF 308
G L+ A + M +RGF
Sbjct: 183 GFLQNNGASRAEQLFQEMFDRGF 205
>gi|302774757|ref|XP_002970795.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
gi|302806735|ref|XP_002985099.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300147309|gb|EFJ13974.1| hypothetical protein SELMODRAFT_121414 [Selaginella moellendorffii]
gi|300161506|gb|EFJ28121.1| hypothetical protein SELMODRAFT_441332 [Selaginella moellendorffii]
Length = 543
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 3/158 (1%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G HPD T N L+S C ++ +A +VL M C P+L +Y+++I + A + N+A
Sbjct: 273 GTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTYNVLISGLCDAGRANEA 332
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL-ERKGCPIGFQGYEVVV 284
E++ EM G++P + N ++ +A ++ + ER P G Y +
Sbjct: 333 CELLSEMD-GRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGIS-YCTLA 390
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
L+ + A + M + G IP + ++EGL
Sbjct: 391 VALLKSERFDEAFALLDNMFDAGAIPNLFTFNSLMEGL 428
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ ++L EM G PD T N L+ C Q+ +A ++ M +PD SY
Sbjct: 328 RANEACELLSEMDGRGILPDIITYNSLIGIFCRNFQIEQAFQIQNLMVERGVIPDGISYC 387
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ A+ + + ++A ++ M + G +P + L +R + +A ++ + R
Sbjct: 388 TLAVALLKSERFDEAFALLDNM-FDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRR 446
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
GC YEV+V G + A + ++ M G P + +V LA G+ L
Sbjct: 447 VGCDPAASTYEVLVTGLCKAGRVDDAKEVLVMMVSEGIQPLVSSSGTIVHTLAREGKQDL 506
Query: 331 A 331
A
Sbjct: 507 A 507
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 76/165 (46%), Gaps = 3/165 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EMK G+ PD T + +V +LC L A + + S EC PD ++I++ +
Sbjct: 127 LLAEMKERGHSPDVVTHSSIVQALCNTGNLSRAMQYFR--ESVECAPDSVLFNILVHGLC 184
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + ++A +M++EM G++P + L + M +A +++E + ++
Sbjct: 185 KANQLSEARQMIEEMS-ERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNL 243
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ G + LA + + M + G P + ++ G
Sbjct: 244 VTYNTLIYGYCKTGCTGLAHQLIERMIQSGTHPDVVTFNSLISGF 288
Score = 44.3 bits (103), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 67/152 (44%), Gaps = 1/152 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ LC ++ EA ++L+ M + P+L +Y+ +I
Sbjct: 198 EMSERGIVPDVVTYNSLIDGLCKSYRMEEARQLLETMVKRKVRPNLVTYNTLIYGYCKTG 257
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
T A ++++ M+ G P + + ++ KA E++ +++ C Y
Sbjct: 258 CTGLAHQLIERMI-QSGTHPDVVTFNSLISGFCQKSKIDKACEVLHLMKKGLCAPNLVTY 316
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
V++ G + A + + M RG +P I
Sbjct: 317 NVLISGLCDAGRANEACELLSEMDGRGILPDI 348
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 74/182 (40%), Gaps = 6/182 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y+ L+ ++ + A I + G +P L+ A L+ ++ A +L
Sbjct: 349 ITYNSLIGIFCRNFQ-IEQAFQIQNLMVERGVIPDGISYCTLAVALLKSERFDEAFA-LL 406
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
M G P+ T N L+ LC +L EA +L M C P +Y +++ + A
Sbjct: 407 DNMFDAGAIPNLFTFNSLMEGLCCSRRLDEARHLLAVMRRVGCDPAASTYEVLVTGLCKA 466
Query: 220 RKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +DA E++ MV + G+ P G ++ A + + E K C
Sbjct: 467 GRVDDAKEVLVMMV-SEGIQPLVSSSGTIVHTLAREGKQDLALHYFDQVVAAESKACDPS 525
Query: 277 FQ 278
+Q
Sbjct: 526 YQ 527
>gi|297851460|ref|XP_002893611.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
gi|297339453|gb|EFH69870.1| hypothetical protein ARALYDRAFT_336125 [Arabidopsis lyrata subsp.
lyrata]
Length = 814
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 12/215 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL +L R+G P LL+ + ++ R + + L M+ +G P+ T N
Sbjct: 264 ALKVLTLMQRAGVEP----NLLICNTTIDVFVRANRLEKALRFLERMQVVGIVPNVVTYN 319
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C + ++ EA ++L M S C+PD SY ++G + ++ + ++MK+M
Sbjct: 320 CMIRGYCDLHRVEEAIELLDDMPSKGCLPDKVSYYTIMGYLCKEKRIVEVRDLMKKMAKE 379
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+ Q + L + +A+ ++ E KG I GY +V C+E +
Sbjct: 380 HGLVRDQVTYNTLIHMLTKHDHADEALWFLKDAEEKGFRIDKVGYSAIVHAL--CKEGRM 437
Query: 296 --AGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGE 327
A + M +G P + VV G +GE
Sbjct: 438 SEAKDLINEMLSKGHCPPDVVTYTAVVNGFCRLGE 472
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/125 (23%), Positives = 60/125 (48%), Gaps = 1/125 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M + GY P+ + L++ LC + +EA +++ P+ +YS+++ + K
Sbjct: 483 MHTHGYKPNTVSYTALLNGLCRTGKSLEAREMMNMSEEQWWSPNSITYSVLMHGLRKEGK 542
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A ++++EMVL G P + + +L + +A + +E KGC I +
Sbjct: 543 LSEACDVVREMVLK-GFFPGPVEINLLLQSLCRDGRTHEARKFMEECLNKGCAINVVNFT 601
Query: 282 VVVEG 286
V+ G
Sbjct: 602 TVIHG 606
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 87/215 (40%), Gaps = 23/215 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A ++ L GC I ++ + + CQ+ + +L +M I H D T
Sbjct: 581 ARKFMEECLNKGCA----INVVNFTTVIHGFCQNDELDAALSVLDDMYLINKHADVFTYT 636
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV +L ++ EA +++K M P +Y VI K +D V ++++M+L
Sbjct: 637 TLVDALGKKGRIAEATELMKKMLHKGIDPTPVTYRTVIHRYCQMEKVDDLVAILEKMILR 696
Query: 236 MGLMPRQGMVIKVAAAL----RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
VI+ L A++ + K + + K C +GY L+
Sbjct: 697 QKCKTIYNQVIEKLCGLGKLEEADKLLGKVLRTASRSDAKTCYALMEGY-------LKIG 749
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQK-----VVEG 321
+LA K M R IP +K+ +K VVEG
Sbjct: 750 VPLLAYKVACRMFNRNLIPDVKMCEKLSKRLVVEG 784
>gi|168025874|ref|XP_001765458.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162683308|gb|EDQ69719.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 670
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 1/188 (0%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
ER Q + + ++ G PD + + L+S+ Q A +VL+ M +++C P++
Sbjct: 368 ERTAQWEDAMRTFIWIQDKGLTPDVMSWSSLISACANAGQAERALEVLERMKTSDCQPNV 427
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
S+ ++ A A E+ M L+ G P + + +A R+ K + IE
Sbjct: 428 VSWCGLLKAYQKTGNWEKAEEIFHAM-LDSGCPPNEVAWCSLLSAYEKGRQWKKVLYTIE 486
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
LE G + + + + ++ LA + MT+ G +P I +++ VG
Sbjct: 487 KLEELGMKLDVVAWSTTISALAKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVG 546
Query: 327 EWKLATVV 334
W+ A V
Sbjct: 547 LWEKAESV 554
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 79/190 (41%), Gaps = 3/190 (1%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
I L SGC P L SA+ E+ Q + V + +++ +G D + +S+L
Sbjct: 449 IFHAMLDSGCPPNEVAWCSLLSAY-EKGRQWKKVLYTIEKLEELGMKLDVVAWSTTISAL 507
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
Q A + K M+ + C+P++ +YS +I A A + K ++L +G+ P
Sbjct: 508 AKAGQWELAEEKFKQMTKSGCLPNIVTYSSLIKAYGDVGLWEKAESVFK-LMLRVGIRPN 566
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLE-RKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ A +E+ K + E +E + G Y + C C E+ A K +
Sbjct: 567 PQACCALLRAYGKGKELEKVIIFFESMEPQYGVEPDKYAYAAIFWACWTCGEWQRAVKYI 626
Query: 301 MGMTERGFIP 310
M G P
Sbjct: 627 DRMEMAGCTP 636
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/155 (21%), Positives = 68/155 (43%), Gaps = 1/155 (0%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ + +S G P+ C L+++L +L +A K+ + M A + +++ ++
Sbjct: 200 AATKVFRAFRSAGVEPNAYVCTTLIAALGCGRRLSQALKLFRWMEKAGIERPIFTFNALM 259
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A + AVE+ +EM +G++P + + +A A +A I+ ++ +G
Sbjct: 260 VACGRCASGDTAVELFEEME-KLGIVPDRITFTGLVSATTAAGLWDRAQSFIDMMQARGF 318
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
IG Y + C R+ A M E+G+
Sbjct: 319 SIGLHEYIEMQWACARARKPREAYGLFQVMLEQGY 353
>gi|224095732|ref|XP_002310456.1| predicted protein [Populus trichocarpa]
gi|222853359|gb|EEE90906.1| predicted protein [Populus trichocarpa]
Length = 721
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 71/156 (45%), Gaps = 1/156 (0%)
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC I + +A V++ M S +PD +YS VIG + A K A ++ +EM N G+ P
Sbjct: 197 LCGIGKFEKAYNVIREMMSKGFIPDTSTYSKVIGYLCNASKVEKAFQLFQEMKRN-GIAP 255
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + + + +A + +ER GC Y ++ L+ R+ A +
Sbjct: 256 DVYVYTTLIDSFCKAGFIEQARNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVY 315
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
M +G P I +++GL G+ + A+ + +
Sbjct: 316 EMMLSKGCTPNIVTYTALIDGLCKAGKIEKASQIYK 351
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 79/175 (45%), Gaps = 10/175 (5%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++Q V +LE GY P+ T + L+ L +L A KVL M C P++ Y+
Sbjct: 432 EAQEVFTTMLE---CGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYT 488
Query: 211 IVIGAMSTARKTNDAVE---MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+I + KT++A + MM+E N ++ M+ + R K +E+++
Sbjct: 489 EMIDGLCKVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVE----KCLELLQQ 544
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ KGC F Y V++ C A K + M + + ++ +KV+EG
Sbjct: 545 MSSKGCAPNFVTYRVLINHCCSTGLLDEAHKLLEEMKQTYWPRHVAGYRKVIEGF 599
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 38/158 (24%), Positives = 67/158 (42%), Gaps = 1/158 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T LV LC Q+ EA +LK MS C P+ Y +I A K ++A E+
Sbjct: 377 PNVFTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEV 436
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M L G P + L ++ + A++++ + C Y +++G
Sbjct: 437 FTTM-LECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAPNVVIYTEMIDGLC 495
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + A K ++ M E+G P + +++G G
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSG 533
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 57/278 (20%), Positives = 110/278 (39%), Gaps = 25/278 (8%)
Query: 80 KVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
VI EM+ + FIP I Y L + + A + Q R+G P +
Sbjct: 208 NVIREMMSKGFIPDTSTYSKVIGY-------LCNASKVEKAFQLFQEMKRNGIAPDVYVY 260
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L ++ + Q+ + EM+ G P+ T L+ + ++ +A +V + M
Sbjct: 261 TTLIDSFCKAGFIEQA-RNWFDEMERDGCAPNVVTYTALIHAYLKSRKVSKANEVYEMML 319
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV--AAALRANR 256
S C P++ +Y+ +I + A K A ++ K M +P M +V A+ N
Sbjct: 320 SKGCTPNIVTYTALIDGLCKAGKIEKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNV 379
Query: 257 EMWKAV--------------EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ A+ ++++ + +GC Y+ +++GC + + A +
Sbjct: 380 FTYGALVDGLCKAYQVKEARDLLKSMSVEGCEPNHVVYDALIDGCCKAGKLDEAQEVFTT 439
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M E G+ P + +++ L LA V + E
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLE 477
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/205 (22%), Positives = 90/205 (43%), Gaps = 14/205 (6%)
Query: 37 TVRAAVDA--KDYQ--QIPELLGSFE-EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIP 91
T A VD K YQ + +LL S E C+ PN + + + +DE E F
Sbjct: 381 TYGALVDGLCKAYQVKEARDLLKSMSVEGCE-PNHVVYDALIDGCCKAGKLDEAQEVFTT 439
Query: 92 LRPRSRPKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150
+ Y Y L L L LAL +L + L + C P +++ + ++ C
Sbjct: 440 MLECGYDPNVYTYSSLIDRLFKDKRLDLALKVLSKMLENSCAP----NVVIYTEMIDGLC 495
Query: 151 ---QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ +++ M+ G +P+ T ++ ++ + ++L+ MSS C P+
Sbjct: 496 KVGKTDEAYKLMVMMEEKGCNPNVVTYTAMIDGFGKSGRVEKCLELLQQMSSKGCAPNFV 555
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y ++I + ++A ++++EM
Sbjct: 556 TYRVLINHCCSTGLLDEAHKLLEEM 580
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 69/159 (43%), Gaps = 4/159 (2%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C+S + L ++ + PD ++S LC EA L M ++ C+P++ +Y
Sbjct: 21 CKSGKWREALSLLEKEEFVPDTVLYTKMISGLCEASLFEEAMDFLTRMRASSCLPNVLTY 80
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
I++ K ++ M++ G P + + A + + A ++++ +
Sbjct: 81 RILLCGCLNKEKLGRCKRILS-MMITEGCYPSPRIFNSLVHAYCRSGDYAYAYKLLKKMV 139
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ GC G+ Y +++ G E GK V+ + E+ +
Sbjct: 140 QCGCQPGYVVYNILIGGICSSEE---PGKDVLDLAEKAY 175
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 97/231 (41%), Gaps = 23/231 (9%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
R GC P L A+L+ R S++ ++ M S G P+ T L+ LC ++
Sbjct: 285 RDGCAPNVVTYTALIHAYLKSRKVSKA-NEVYEMMLSKGCTPNIVTYTALIDGLCKAGKI 343
Query: 188 VEAAKVLKGMSSAEC-VPDLE----------------SYSIVIGAMSTARKTNDAVEMMK 230
+A+++ K M +PD++ +Y ++ + A + +A +++K
Sbjct: 344 EKASQIYKIMKKENVEIPDVDMHFRVVDGASNEPNVFTYGALVDGLCKAYQVKEARDLLK 403
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M + G P + + ++ +A E+ + G Y +++ +
Sbjct: 404 SMSVE-GCEPNHVVYDALIDGCCKAGKLDEAQEVFTTMLECGYDPNVYTYSSLIDRLFKD 462
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKLATVVRQR 337
+ LA K + M E P + + ++++GL VG+ +KL ++ ++
Sbjct: 463 KRLDLALKVLSKMLENSCAPNVVIYTEMIDGLCKVGKTDEAYKLMVMMEEK 513
>gi|224077524|ref|XP_002305285.1| predicted protein [Populus trichocarpa]
gi|222848249|gb|EEE85796.1| predicted protein [Populus trichocarpa]
Length = 523
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 85/196 (43%), Gaps = 8/196 (4%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQ 186
GC + +L ++ LE C+ +V + + IG H PD + + + C +
Sbjct: 247 GCA----LDVLAYNSLLEALCKGGNVDEAYKMFREIGSHGVEPDACSYAIFIRAYCEANN 302
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
+ VL M + VP++ +Y+ +I + K DA +++ EM + G+ P
Sbjct: 303 IHSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEM-MERGVSPDAWSYN 361
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ A + E+ +A ++I + + C Y ++++ + + A + M ER
Sbjct: 362 TILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESMGER 421
Query: 307 GFIPYIKVRQKVVEGL 322
GF P + ++ GL
Sbjct: 422 GFYPSVSTYSVMIHGL 437
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 2/175 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
SV +L MK P+ T N ++ LC ++ +A ++L M PD SY+ +
Sbjct: 304 HSVFSVLDRMKRYDLVPNVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNTI 363
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + N A +++ MV + L R + + +R R +A E+ E + +G
Sbjct: 364 LAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGR-FDRATEIWESMGERG 422
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V++ G C + + A + M + G PY + + L G G
Sbjct: 423 FYPSVSTYSVMIHGLCKKKGKLEEACRYFETMIDEGIPPYASTIEMLRNRLIGFG 477
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 55/116 (47%), Gaps = 7/116 (6%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNY 176
++L R R VP + + +++ C++ V D +L EM G PD + N
Sbjct: 307 FSVLDRMKRYDLVP----NVFTYNCIIKKLCKNGKVEDAYQLLHEMMERGVSPDAWSYNT 362
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+++ C ++ A K++ M C+PD SY++++ + + + A E+ + M
Sbjct: 363 ILAYHCEHSEVNRATKLISIMVKDNCLPDRHSYNMLLKLLVRVGRFDRATEIWESM 418
>gi|356497979|ref|XP_003517833.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 595
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 14/215 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL+ L++ C + + +A ++ C+ V D+ +M G PD T N
Sbjct: 202 ALSYLKKMEEQNC----NLDVTAYNAVVDGLCKDGMVFEAWDLFSQMTGKGIQPDLFTYN 257
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC D+ EAA +L M +PD+++++++ G + A K +
Sbjct: 258 CLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIGGRFLKTGMISRA----KSIFSF 313
Query: 236 MGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
MG M + V+ ++ + + +M A+E+ + + RKGC Y ++ G E +
Sbjct: 314 MGHMGIEHDVVTYSSIIGVHCMLNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKN 373
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + M G P I ++ G G+
Sbjct: 374 MNKAMYFLGEMVNNGLDPNIVTWNTLIGGFCKAGK 408
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/267 (21%), Positives = 101/267 (37%), Gaps = 49/267 (18%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L+ + A+ + +R GC+P L W E + ++++ L EM + G P+
Sbjct: 336 LNQMKDAMEVFDLMIRKGCLPNIVTYTSLIHGWCEIKNMNKAMY-FLGEMVNNGLDPNIV 394
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES------------------------ 208
T N L+ C + V A ++ M +PDL++
Sbjct: 395 TWNTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFREL 454
Query: 209 -----------YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------A 251
YSI++ M ++ K NDA+E+ + +G+ I V
Sbjct: 455 EKMNSDLDIIIYSIILNGMCSSGKLNDALELFS-------YLSSKGVKIDVVTYNIMING 507
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
L + A +++ +E GCP Y V V+G L E + K +M M +GF
Sbjct: 508 LCKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGLLRRYEISKSTKYLMFMKGKGFRAN 567
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRF 338
+ ++ + E + V Q+F
Sbjct: 568 ATTTKLLINYFSANKENRAFQVFLQKF 594
>gi|110741592|dbj|BAE98744.1| PPR-repeat protein [Arabidopsis thaliana]
Length = 548
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 4/188 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+++ V D K I G P+ T LV+ LC + +AA++L M
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ P++ +YS ++ A K +A E+ +EMV M + P + L + +
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPDIVTYSSLVNGLCLHDRID 312
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y ++ G + + K M++RG + ++
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 320 EGLAGVGE 327
+G G+
Sbjct: 373 QGFFQAGD 380
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL +M +GY PD T LV+ C +++ +A ++ M PD+ +Y+ +I ++
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201
Query: 218 TARKTNDAVEMMKEM 232
++ NDA + KE+
Sbjct: 202 KTKRVNDAFDFFKEI 216
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G D T N +++ C Q+ A +L M PD + ++
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV +G P + +L + + A + + +ERKG Y
Sbjct: 170 RVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + A + + M ++ P + +++ G+
Sbjct: 229 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
>gi|115461911|ref|NP_001054555.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|52353663|gb|AAU44229.1| hypothetical protein [Oryza sativa Japonica Group]
gi|113578106|dbj|BAF16469.1| Os05g0132000 [Oryza sativa Japonica Group]
gi|125550727|gb|EAY96436.1| hypothetical protein OsI_18334 [Oryza sativa Indica Group]
Length = 637
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 12/207 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRL---LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL R GC P +R+ LL + L R +V + M+ G P+ T N
Sbjct: 105 ALKTFYRASDLGCRD-PGVRVYNHLLDA--LLRENMVGAVVPVYDNMRKAGVDPNVYTYN 161
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC D++ A K+L MS C PD S+ ++ M + +A + E V
Sbjct: 162 LLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV-- 219
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P Q V AL MW+ ++ + ++G Y +V+ + RE +
Sbjct: 220 ----PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRM 275
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M G P + +V+G
Sbjct: 276 ACAILARMVSMGCTPNVLTFTALVKGF 302
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 8/219 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCG 172
L +A AIL R + GC P +L +A ++ + V D L M G+ P
Sbjct: 273 LRMACAILARMVSMGCTP----NVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTI 328
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ N L+ LC I L A M +P+ +YS ++ S A + A+ + EM
Sbjct: 329 SYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEM 388
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G P + + L +A +I+ + CP + ++ +C
Sbjct: 389 K-SSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGR 447
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A GM G P + +++ GL G K A
Sbjct: 448 VGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 486
>gi|302799687|ref|XP_002981602.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
gi|300150768|gb|EFJ17417.1| hypothetical protein SELMODRAFT_114819 [Selaginella moellendorffii]
Length = 628
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 49/166 (29%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK+ G PD T N L+ LC ++ EA L M +A+C PD+ SY+I+I A+ + +
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
A + +EMV G++P + + L N A+E+ L+ C F ++
Sbjct: 495 AAGAHAIFQEMV-KRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLCKPDFVMHK 550
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+VV+G + + A + V M + GF VV GL +G+
Sbjct: 551 MVVDGLCKAGKAEDACEVVERMADAGFPADAFTYINVVRGLRKLGK 596
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ GY PD T + ++ LC +L +A ++L + + ++ +YS+VI A
Sbjct: 63 QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DA+E+ K M G +P + L + M +A + E++ + GC Y
Sbjct: 123 RVDDALEIFKTMSAGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++G + A + M E+ +P + V GL
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGL 224
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 28/269 (10%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIA--YDYLLSYTLQSLHPLPLALAILQR--TLRSGCVP 133
R ++DE ++F + R+ P A ++ L+ +S LP + + QR +++ P
Sbjct: 278 RSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS-KRLPDGVLLFQRMKSMKEFYCP 336
Query: 134 VPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P + + ++ C+++ + +++ EM + G PD T + LV LC + +L A
Sbjct: 337 -PNLETY--NIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRA 393
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA---VEMMKEMVLNMGLMPRQGMVIK 247
+L+ MS PD + + ++ A+S A K + A +E MK L+ ++
Sbjct: 394 CDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453
Query: 248 VAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILAGKTVM--G 302
+ A R + E I FL + C Y +++ CR AG +
Sbjct: 454 LCKAGRID-------EAITFLAKMVAAKCTPDVFSYTIIITAL--CRSGQAAGAHAIFQE 504
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M +RG +P + +++GLA G LA
Sbjct: 505 MVKRGVLPDTVLYHSLLDGLARNGLEDLA 533
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 63/147 (42%), Gaps = 7/147 (4%)
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQ--SVADILLE-MKSIGYHPDCGTCNYLVSSLCAID 185
GCVP ++ ++ L+ C + S A +L E M G P+ + + L+ LC
Sbjct: 138 GGCVP----DVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGLCKAG 193
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+L EA ++ + M CVPDL +Y+ + + A + +A + ++MV
Sbjct: 194 RLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADAVAFS 253
Query: 246 IKVAAALRANREMWKAVEMIEFLERKG 272
+ + +MIE L R G
Sbjct: 254 TVIGILCKKGHAEEAQNQMIEHLCRSG 280
>gi|15239161|ref|NP_201383.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170571|sp|Q9FH87.1|PP447_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At5g65820
gi|9758569|dbj|BAB09050.1| unnamed protein product [Arabidopsis thaliana]
gi|332010728|gb|AED98111.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 637
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L +M+ G+ P+ L+ +LC +D++ EA KV M EC D+ +Y+ ++
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + ++ +M+ GLMP + + + A + +E++E + +
Sbjct: 368 CKWGKIDKCYIVLDDMI-KKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPD 426
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VV+ + E A + M E G P + ++ GLA G
Sbjct: 427 IGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 476
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L ++ G +P + + A E++ + +++ +M+ I YHPD G N ++
Sbjct: 379 VLDDMIKKGLMPSELTYMHIMVAH-EKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLA 437
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
C + ++ EA ++ M P ++++ I+I +++ +A + KEMV
Sbjct: 438 CKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMV 489
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 146 LERRCQSQSVADI--LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L+ C+ SV D L E + + + L+ C + +++EA VL M+ A
Sbjct: 225 LDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFE 284
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ Y+ ++ + A K DA +++++M G P + AL M +A++
Sbjct: 285 PDIVDYTNLLSGYANAGKMADAYDLLRDM-RRRGFEPNANCYTVLIQALCKVDRMEEAMK 343
Query: 264 MIEFLERKGCPIGFQGYEVVVEG 286
+ +ER C Y +V G
Sbjct: 344 VFVEMERYECEADVVTYTALVSG 366
>gi|302763707|ref|XP_002965275.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
gi|300167508|gb|EFJ34113.1| hypothetical protein SELMODRAFT_83272 [Selaginella moellendorffii]
Length = 445
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 4/184 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ + DI++EM G+ P T N L+ C DQ+ AA++L+ M+ ++C P+ +YS
Sbjct: 206 EALGMTDIMVEM---GFCPTIVTFNALLELFCNTDQMDSAAELLETMARSKCKPNFVTYS 262
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I++ + + +A ++++V+ G P + A L EM A + +
Sbjct: 263 IMVQKFAEMGRMVEARAFLEQLVV-CGYAPNLLVCNAYVAGLCKTGEMDLASRFLTVMAE 321
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+GC Y +VEG + A + + M G +P +++GL G+
Sbjct: 322 EGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVH 381
Query: 331 ATVV 334
A +V
Sbjct: 382 AFMV 385
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 16/296 (5%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNF--PQNHRIKVIDEMLESF--IPLRPRSRPK 99
A ++ + L+ F++ +P L N +++DE + +P S
Sbjct: 27 AGEFDEAKRLVAEFKDTGMSPGSLVVLHNLMLKGFSEARLVDEAKSHLHRMDCKPNS--- 83
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
++Y+ L+ L S + A LQ + G P ++ + L + +++
Sbjct: 84 VSYNTLID-ALCSSGRIQEAREELQAMAKRGVAP-NRVTYNAMATGLGKAGLLDEAFELM 141
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
M+S G+ T N +V LC + EA KV++ M P++ + ++++ A A
Sbjct: 142 GVMESAGFALTAVTFNPVVEFLCKSGKPDEACKVMETMLLRNIEPNILTLNLILHAFCKA 201
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR---ANREMWKAVEMIEFLERKGCPIG 276
+ +A+ M MV MG P ++ A L +M A E++E + R C
Sbjct: 202 ARPEEALGMTDIMV-EMGFCPT---IVTFNALLELFCNTDQMDSAAELLETMARSKCKPN 257
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
F Y ++V+ E + A + + G+ P + V V GL GE LA+
Sbjct: 258 FVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAGLCKTGEMDLAS 313
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 74/165 (44%), Gaps = 9/165 (5%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ L F ++ E+LE+ R + +P ++ + + A A L++ +
Sbjct: 228 ALLELFCNTDQMDSAAELLETMA--RSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLV 285
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
G P LL+ +A++ C++ + + L M G + T N LV C +
Sbjct: 286 VCGYAP----NLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKL 341
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
++ EA +VL+ M + +PD +YS++I + +A + A +M
Sbjct: 342 GRMDEAERVLEEMIAEGSLPDSTTYSVLIQGLCSAGQIVHAFMVM 386
>gi|255660970|gb|ACU25654.1| pentatricopeptide repeat-containing protein [Verbena bonariensis]
Length = 350
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 109 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 164
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
G M +I + N+ +A +++ L KG G Y +++EG +
Sbjct: 165 GTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKV 224
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 225 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 262
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 107 SAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGT 166
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P + +Y+ +I + +A ++KE+ L+ GL P + L + ++
Sbjct: 167 MHCSPTIITYNTLINGFCKNKMFGEAYNLVKEL-LDKGLDPGVITYSMLMEGLCFDHKVE 225
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+++ + KG Q + +++ G + LA M P + ++
Sbjct: 226 RALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 285
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 286 EGFYKDGDIRNALVIWAR 303
>gi|242033891|ref|XP_002464340.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
gi|241918194|gb|EER91338.1| hypothetical protein SORBIDRAFT_01g016560 [Sorghum bicolor]
Length = 758
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 118/272 (43%), Gaps = 15/272 (5%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPF--SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKI 100
DA Y Q E+ FE N F N +H +KV+D ML+ P +
Sbjct: 285 DALGYIQ-QEIADGFEPDQVTYNTFVHGLCQNGHVSHALKVMDLMLQE------GHDPDV 337
Query: 101 -AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
Y+ +++ L L A I+ + + GC+P L A L + + + D+
Sbjct: 338 FTYNTVIN-CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVA-LSSQNRLEEALDLA 395
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
E+ G PD T N L+++LC + ++ + M S+ C PD +Y+I+I + +
Sbjct: 396 RELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCTPDEVTYNILIDHLCSM 455
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
K +A++++ EM N PR + + AL + +A E+ + ++ +G
Sbjct: 456 GKLGNALDLLNEMESNG--CPRSTVTYNTIIDALCKKMRIEEAEEVFDQMDAQGISRSAV 513
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ +++G + + A + + M + G P
Sbjct: 514 TFNTLIDGLCKAKRIDDATELIEQMVKEGLQP 545
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+++ + D ++ +M G P+ T N +++ C + +AA +L+ M++ D+
Sbjct: 523 CKAKRIDDATELIEQMVKEGLQPNNITYNSILTHYCKQGNIKKAADILETMTANGFEIDV 582
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y +I + A +T A+++++ M + G+ P V +L + A+ +
Sbjct: 583 VTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPKAYNPVIQSLFRRNNLRDALNLFR 641
Query: 267 FLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ G P Y++V C A ++ M +GF+P + + EGL +
Sbjct: 642 EMTEVGEPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNL 701
Query: 326 G 326
G
Sbjct: 702 G 702
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 11/176 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A ++++ ++ G P + ++ L C+ ++ ADIL M + G+ D T
Sbjct: 531 ATELIEQMVKEGLQP----NNITYNSILTHYCKQGNIKKAADILETMTANGFEIDVVTYG 586
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + A K+L+GM P ++Y+ VI ++ DA+ + +EM
Sbjct: 587 TLINGLCKAGRTQVALKLLRGMRIKGIRPTPKAYNPVIQSLFRRNNLRDALNLFREMT-E 645
Query: 236 MGLMPRQGMVIKVA--AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+G P + K+ + R + +A + + + KG F + ++ EG L
Sbjct: 646 VG-EPPDALTYKIVFRSLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLN 700
>gi|75194072|sp|Q9S7R4.1|PP125_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g74900, mitochondrial; AltName: Full=Protein
ORGANELLE TRANSCRIPT PROCESSING DEFECT 43; Flags:
Precursor
gi|5882733|gb|AAD55286.1|AC008263_17 Contains a PF|01535 DUF17 domain [Arabidopsis thaliana]
gi|12323885|gb|AAG51911.1|AC013258_5 hypothetical protein; 69434-67986 [Arabidopsis thaliana]
Length = 482
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 111/293 (37%), Gaps = 46/293 (15%)
Query: 80 KVIDEMLESFIPLRPR-SRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVP-VPQ 136
K +++ E F LR R S + Y+ +L+ + L + P AL +L+ + G P +
Sbjct: 175 KRVEKAYELFRALRGRFSVDTVTYNVILNGWCL--IKRTPKALEVLKEMVERGINPNLTT 232
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + R Q + + LEMK D T +V ++ A V
Sbjct: 233 YNTMLKGFF--RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M +P + +Y+ +I + +AV M +EMV G P + L
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV-RRGYEPNVTTYNVLIRGLFHAG 349
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY----------------------- 293
E + E+++ +E +GC FQ Y +++ EC E
Sbjct: 350 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 409
Query: 294 ---------------ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++AGK ++ M ERGFIP +V+ GL G A
Sbjct: 410 ILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFA 462
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 50/344 (14%)
Query: 28 MSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP-----FSFLSNFPQNHRIKVI 82
+SS T + + + K P L+ S + N P F FL N +HR V
Sbjct: 33 LSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN---HHREYVH 89
Query: 83 DEMLESF-----IPLRPRSRPKIAYDYLLSYTLQSLH--PLPLALAILQRTLRSGCVPVP 135
D SF I R P + + L + ++SL P P AI+ S P
Sbjct: 90 DA--SSFDLAIDIAARLHLHPTV---WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 144
Query: 136 QIRLLLS---SAWLERRCQSQSVADILLEMKSIG------------YHPDCGTCNYLVSS 180
++L L+ + ++ D+L + K + + D T N +++
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 204
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM---MKEMVLNMG 237
C I + +A +VLK M P+L +Y+ ++ A + A E MK+ +
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 238 LMPRQGMV--IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
++ +V VA ++ R ++ EMI R+G Y +++ + C++ +
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFD--EMI----REGVLPSVATYNAMIQ--VLCKKDNV 316
Query: 296 AGKTVM--GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
VM M RG+ P + ++ GL GE+ + QR
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 360
>gi|15231863|ref|NP_190938.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174107|sp|Q9LFF1.1|PP281_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g53700, chloroplastic; AltName: Full=Protein MATERNAL
EFFECT EMBRYO ARREST 40; Flags: Precursor
gi|6729521|emb|CAB67677.1| putative protein [Arabidopsis thaliana]
gi|15982931|gb|AAL09812.1| AT3g53700/F4P12_400 [Arabidopsis thaliana]
gi|332645608|gb|AEE79129.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 754
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ D++L+ GY PD T N ++S LC + ++ EA +VL M + +C P+ +Y+ +I
Sbjct: 317 IMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + +A E+ + ++ + G++P + L R A+E+ E + KGC
Sbjct: 374 TLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432
Query: 275 IGFQGYEVVVE 285
Y ++++
Sbjct: 433 PDEFTYNMLID 443
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 10/255 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
++V+D+M+ R S + Y+ L+S TL + + A + + G +P V
Sbjct: 350 VEVLDQMIT-----RDCSPNTVTYNTLIS-TLCKENQVEEATELARVLTSKGILPDVCTF 403
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+ L R + ++ EM+S G PD T N L+ SLC+ +L EA +LK M
Sbjct: 404 NSLIQGLCLTR--NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ C + +Y+ +I A KT +A E+ EM ++ G+ + L +R
Sbjct: 462 ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRR 520
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A ++++ + +G Y ++ + A V MT G P I
Sbjct: 521 VEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580
Query: 318 VVEGLAGVGEWKLAT 332
++ GL G ++A+
Sbjct: 581 LISGLCKAGRVEVAS 595
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V D ++ +M G PD T N L++ C + +AA +++ M+S C PD+
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDI 575
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVL-NMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I + A + A ++++ + + + L P V L R+ +A+ +
Sbjct: 576 VTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHA--YNPVIQGLFRKRKTTEAINLF 633
Query: 266 -EFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
E LE+ P Y +V G C A ++ + E+GF+P + EGL
Sbjct: 634 REMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
Query: 324 GVGEW----KLATVVRQ--RFAE 340
+ KL +V Q RF+E
Sbjct: 694 TLSMEETLVKLVNMVMQKARFSE 716
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ ++L +M + P+ T N L+S+LC +Q+ EA ++ + ++S +PD+ +++ +
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + R A+E+ +EM + G P + + +L + ++ +A+ M++ +E G
Sbjct: 407 IQGLCLTRNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 273 CPIGFQGYEVVVEG 286
C Y +++G
Sbjct: 466 CARSVITYNTLIDG 479
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 5/186 (2%)
Query: 150 CQSQSVADILLEMKSI----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ V D L ++ + G+ PD T N LV+ LC + A +++ M PD
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ VI + + +AVE++ +M+ P + + L ++ +A E+
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMI-TRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
L KG + +++G R + +A + M +G P +++ L
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 326 GEWKLA 331
G+ A
Sbjct: 449 GKLDEA 454
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G PD T N L+ +LC QL A +L+ M S VPD ++++ V+
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF--- 277
+ A+ + ++MV G + V + + + + + F++ GF
Sbjct: 239 DLDGALRIREQMV-EFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 278 -QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ +V G + A + + M + G+ P + V+ GL +GE K A V
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
>gi|302784232|ref|XP_002973888.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
gi|300158220|gb|EFJ24843.1| hypothetical protein SELMODRAFT_100264 [Selaginella moellendorffii]
Length = 399
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 20/234 (8%)
Query: 49 QIPELLGSFEEACQ----NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA 101
+I G EE Q +P+ F++ ++ ++ ++ DE+L+ I + +A
Sbjct: 171 EIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVA 230
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---I 158
++ L+ ++ L A +L L GC P ++ S ++ C+ V +
Sbjct: 231 FNTLVDGYCKA-QDLDRARELLSSMLEHGCAP----DVVTYSTIIDGLCRCGDVDKGFAL 285
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M S G PD T LV+ LC ++VEA +++K M C P+ +YS+V +
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345
Query: 219 ARK---TNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL--RANREMWKAVEMIEF 267
K ND + +++ ++ + +++ V L RA + WK I F
Sbjct: 346 IDKLDMANDLLTSIRDKGRITDVVAFEALLLSVKKRLLDRAAFQKWKLETSINF 399
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILL 160
Y++ + +S +P A+ +++ C P V L+ A L + + +L
Sbjct: 57 YNFFVHALCKS-GKVPEAMEVVKNMKDGACKPDVVTFNTLI--AGLCKAGRLDEAQQVLD 113
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G+ + T N L++ L + + EA V++GM++ PD ++Y+ +I +
Sbjct: 114 EMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSG 170
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQG 279
+ + A ++EM G P + L + + KA E++ E + RK C
Sbjct: 171 EIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVA 230
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +V+G + ++ A + + M E G P + +++GL G+
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGD 278
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 1/186 (0%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS-AECVPDLESYSIVIG 214
+ +L M+ + PD T N ++ C ++ A L+ M A C PD +YSI+I
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A E+++EM+ + +++ +A E++ + GC
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y +++G C + + M RG P + +V GL G+ A +
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRL 320
Query: 335 RQRFAE 340
+R E
Sbjct: 321 VKRMLE 326
>gi|147780248|emb|CAN65741.1| hypothetical protein VITISV_037758 [Vitis vinifera]
Length = 730
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 106 LSYTLQSLHPL---PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
L+Y +++L L LAL +R + GC P + +L S + R +SV +L EM
Sbjct: 206 LNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKTFDILISGLIARNLVEKSVV-VLGEM 264
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
+ D ++ C++ Q+ E + M +++ VPDL Y ++I +S +
Sbjct: 265 IELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMRASKLVPDLLIYRVLIQCLSESLWL 324
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
+DA+ +++EM+ GL P + + + + +A EF + C G +
Sbjct: 325 DDAINLLEEMI-GCGLTPEDDVFVYIVKGFCKLGKFNEA----EFFLKDKCVFGTDPHNA 379
Query: 283 VVEG 286
++EG
Sbjct: 380 LLEG 383
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IRLL+ + + C + S I+L + +G D LV VL
Sbjct: 533 IRLLVLACYSGTSCTNASYKAIMLGLSKLGKDSD-----ILV--------------VLSK 573
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C+ D+E+Y I++ +M +T D MV + GL+P V + + L +
Sbjct: 574 MLVEGCILDVEAYCILVQSMCALSRTEDIARFFNLMV-SEGLVPDSETVATLLSCLTKHS 632
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
++ + I L G + Y +++ G L+ A + + M E+G++P
Sbjct: 633 QLHTILTAIGKLASDGEILNSSMYNLLIIGLLKEGYKSEACRLLDLMLEKGWVP 686
>gi|238480176|ref|NP_001154199.1| uncharacterized protein [Arabidopsis thaliana]
gi|223635643|sp|Q8LDU5.2|PP298_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g01400, mitochondrial; Flags: Precursor
gi|332656621|gb|AEE82021.1| uncharacterized protein [Arabidopsis thaliana]
Length = 466
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L+ + L P P+ + + R Q ++ + G P+ + N L+
Sbjct: 139 LSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQ 198
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+ C D L A ++ M + VPD++SY I+I + N A+E++ +M LN G +
Sbjct: 199 AFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDM-LNKGFV 257
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE--YILAG 297
P + + +L ++ +A +++ ++ KGC Y ++ G CRE + A
Sbjct: 258 PDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGF--CREDRAMDAR 315
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
K + M G P + ++ GL G +
Sbjct: 316 KVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 119 ALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L L G VP LL+S L R+ Q + +L MK G +PD N +
Sbjct: 244 AMELLDDMLNKGFVPDRLSYTTLLNS--LCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C D+ ++A KVL M S C P+ SY +IG + ++ + ++EM+ + G
Sbjct: 302 ILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI-SKG 360
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
P + + + ++ +A +++E + + G + +E+V+
Sbjct: 361 FSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVI 407
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 39/213 (18%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A + + L VP V ++L+ R+ Q ++L +M + G+ PD +
Sbjct: 206 LSIAYQLFGKMLERDVVPDVDSYKILIQGFC--RKGQVNGAMELLDDMLNKGFVPDRLSY 263
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC QL EA K+L M C PDL Y+ +I + DA +++ +M+
Sbjct: 264 TTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS 323
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N GC Y ++ G + +
Sbjct: 324 N------------------------------------GCSPNSVSYRTLIGGLCDQGMFD 347
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K + M +GF P+ V +V+G G+
Sbjct: 348 EGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380
>gi|295831109|gb|ADG39223.1| AT5G43820-like protein [Capsella grandiflora]
Length = 169
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIKHKGSVPDANVYNAMICNFISARDFDESXXYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G +P G+V L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCKISESAYKLLLK 148
>gi|11994279|dbj|BAB01462.1| unnamed protein product [Arabidopsis thaliana]
Length = 648
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 36/215 (16%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G PD T N L+ C + L EA ++ M S C PD+ +YSI+I + A+
Sbjct: 369 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 428
Query: 221 KTNDAVEMMKEMVLNMGLMPR------------------------QGMVIK--------- 247
+ +D + + +E + + GL+P Q MV +
Sbjct: 429 RVDDGMRLFRE-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 487
Query: 248 --VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L N E+ KA+E+ E +++ +G Y +++ G + A +++
Sbjct: 488 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 547
Query: 306 RGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+G P + ++ GL G A ++ ++ E
Sbjct: 548 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 582
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 7/204 (3%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ S D L EM+ G D T + L+ LC + + AK+L+ M
Sbjct: 278 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 337
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+PD+ ++S +I K +A E+ EM+ G+ P + +
Sbjct: 338 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLH 396
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y +++ + + + ++ +G IP +V
Sbjct: 397 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 456
Query: 320 EGLAGVGEWKLATVVRQRFAELKS 343
G G+ A ++ F E+ S
Sbjct: 457 LGFCQSGKLNAA---KELFQEMVS 477
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V D + + G PD T N ++ LC L EA + + M C PD
Sbjct: 530 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 589
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+I+I A +VE+++EM
Sbjct: 590 FTYNILIRAHLGGSGLISSVELIEEM 615
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+GY PD T + LV+ C ++ EA ++ M + PDL + S +I + + ++
Sbjct: 163 LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 222
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ ++ MV G P + V L + A+++ +E + Y +V+
Sbjct: 223 ALVLIDRMV-EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 281
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ + + A M +G + ++ GL G+W
Sbjct: 282 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 325
>gi|358346916|ref|XP_003637510.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503445|gb|AES84648.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 718
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 2/136 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DI+ M G+ PD T N L+S +C + + +A ++L+ M EC P+ +Y+ +I A+
Sbjct: 284 DIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILRECSPNTVTYNTLISAL 343
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A ++ + ++++ GL+P + L ++ A+EM E ++ KGC
Sbjct: 344 CKENEIEAATDLAR-ILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPD 402
Query: 277 FQGYEVVVEG-CLECR 291
Y ++++ C E R
Sbjct: 403 EFTYSILIDSLCYERR 418
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 53/209 (25%), Positives = 93/209 (44%), Gaps = 16/209 (7%)
Query: 138 RLLLSSAWLERRC------------QSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R+L+S L C ++Q +A ++ EMK+ G PD T + L+ SLC
Sbjct: 357 RILVSKGLLPDVCTFNTLIQGLCLSKNQDIAMEMFEEMKNKGCKPDEFTYSILIDSLCYE 416
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+L EA +LK M S+ C + Y+ +I + +R+ DA E+ +M L +G+
Sbjct: 417 RRLKEALMLLKEMESSGCARNAVVYNTLIDGLCKSRRIEDAEEIFDQMEL-LGVSRSSVT 475
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ L N+ + +A ++++ + +G P F ++ C + AG V M
Sbjct: 476 YNTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFC-RVGDIEKAGDIVQTM 534
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
G P I ++ GL G +A+
Sbjct: 535 ASNGCEPDIFTYGTLIGGLCRAGRVDVAS 563
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 85/193 (44%), Gaps = 4/193 (2%)
Query: 119 ALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL + ++ L GC+ +++L++ E R + +LE+ G+ PD T N L
Sbjct: 212 ALKMKKQMLGYGCLLTNVSVKVLVNGFCKEGRVEE--ALRFVLEVSEEGFSPDQVTFNSL 269
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
V+ C I + +A ++ M PD+ +Y+ +I M + A+E++++M+L
Sbjct: 270 VNGFCRIGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQMILR-E 328
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + +AL E+ A ++ L KG + +++G + +A
Sbjct: 329 CSPNTVTYNTLISALCKENEIEAATDLARILVSKGLLPDVCTFNTLIQGLCLSKNQDIAM 388
Query: 298 KTVMGMTERGFIP 310
+ M +G P
Sbjct: 389 EMFEEMKNKGCKP 401
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 39/169 (23%), Positives = 78/169 (46%), Gaps = 5/169 (2%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+G+ PD N +++L ++L + M + V D+ +++++I A+ A +
Sbjct: 117 LGFKPDTNFYNIALNALVEDNKLKLVEMLHSKMVNEGIVLDVSTFNVLIKALCKAHQLRP 176
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ M++EM N GL P + + ++ A++M + + GC + +V+V
Sbjct: 177 AILMLEEMA-NHGLKPDEITFTTLMQGFIEEGDLNGALKMKKQMLGYGCLLTNVSVKVLV 235
Query: 285 EGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G C+E + A + V+ ++E GF P +V G +G A
Sbjct: 236 NGF--CKEGRVEEALRFVLEVSEEGFSPDQVTFNSLVNGFCRIGNVNDA 282
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T N L+ +LC QL A +L+ M++ PD +++ ++ N A++M
Sbjct: 157 DVSTFNVLIKALCKAHQLRPAILMLEEMANHGLKPDEITFTTLMQGFIEEGDLNGALKMK 216
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
K+M+ L+ + + V + R + +A+ + + +G + +V G
Sbjct: 217 KQMLGYGCLLTNVSVKVLVNGFCKEGR-VEEALRFVLEVSEEGFSPDQVTFNSLVNGFCR 275
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
A V M E+GF P + ++ G+ +GE++ A + Q+
Sbjct: 276 IGNVNDALDIVDFMIEKGFDPDVYTYNSLISGMCKLGEFEKAIEILQQ 323
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/184 (20%), Positives = 83/184 (45%), Gaps = 5/184 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+++ V + ++ +M G PD T N L++ C + + +A +++ M+S
Sbjct: 477 NTLIDGLCKNKRVEEASQLMDQMIMEGLKPDKFTYNSLLTYFCRVGDIEKAGDIVQTMAS 536
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C PD+ +Y +IG + A + + A ++++ + + G++ V AL +
Sbjct: 537 NGCEPDIFTYGTLIGGLCRAGRVDVASKLLRSVQMK-GIVLTPHAYNPVIQALFMRKRTK 595
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+ + + + K P +++V G C A + M E+G +P +
Sbjct: 596 EGMRLFREMMEKSDPPDALTHKIVFRGLCNGGGPIQEAIDFTVEMLEKGILPEFPSFGFL 655
Query: 319 VEGL 322
EGL
Sbjct: 656 AEGL 659
>gi|326525465|dbj|BAJ88779.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 680
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 96/207 (46%), Gaps = 8/207 (3%)
Query: 82 IDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+D LE F +P P + I Y LL+ L L A +L ++ C P+ +
Sbjct: 448 VDSALELFNNLPCEPNT---ITYTTLLT-GLCHAERLDAAAELLAEMIQKDC-PLNAVTF 502
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ ++ + +++ +M G P+ T N L+ + EA ++L G+ S
Sbjct: 503 NVLVSFFCQKGFVEEAMELVNQMMEHGCTPNLITFNTLLDGITKDCNSEEALELLHGLVS 562
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D +YS V+ +S +T +A++M+ V +MG+ P+ GM K+ AL E
Sbjct: 563 KGVSLDTITYSSVVDVLSREDRTEEAIQML-HAVQDMGMRPKVGMYNKILFALCKRCETD 621
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
+A++ ++ GC Y +++EG
Sbjct: 622 QAIDFFAYMVSNGCMPNESTYIILIEG 648
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 69/156 (44%), Gaps = 8/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+R +ER Q +L +M G P+ CN +++++C ++ +A L
Sbjct: 299 VRFFCRGGMVERAIQ------VLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNN 352
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C PD SY+ V+ + A + A E++ EMV P + L
Sbjct: 353 MGMYGCNPDTISYTTVLRGLCRAGRWEHAKELLPEMV-RKNCPPNEVTFNTFICILCQKG 411
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ +A+++IE + GC +G Y +V G C++ R
Sbjct: 412 LIEQAIKLIELMPEYGCSVGIVTYNALVHGFCVQGR 447
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 92/208 (44%), Gaps = 8/208 (3%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCA 183
L+ GC P ++ + LE C+S ++L EM++ G P+ T N +++ +C
Sbjct: 179 LQRGCQP----SVVTYTVLLEAVCKSSGFGEAMNVLDEMRAKGCTPNIVTYNVIINGMCR 234
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
++ +A ++L +SS PD+ SY+ V+ + AR+ +D + EMV + +P +
Sbjct: 235 EGRVDDAKEILNRLSSYGFQPDIVSYTTVLKGLCAARRWDDVKVLFAEMV-DKKCVPNEV 293
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ + +A+++++ + + GC +V+ + A + M
Sbjct: 294 TFDMLVRFFCRGGMVERAIQVLQQMSQHGCTPNTTLCNIVINAICKQGRVDDAYDFLNNM 353
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G P V+ GL G W+ A
Sbjct: 354 GMYGCNPDTISYTTVLRGLCRAGRWEHA 381
>gi|2827705|emb|CAA16678.1| predicted protein [Arabidopsis thaliana]
Length = 598
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L +M+ G+ P+ L+ +LC +D++ EA KV M EC D+ +Y+ ++
Sbjct: 284 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 343
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + ++ +M+ GLMP + + + A + +E++E + +
Sbjct: 344 CKWGKIDKCYIVLDDMI-KKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPD 402
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VV+ + E A + M E G P + ++ GLA G
Sbjct: 403 IGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 452
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 25/113 (22%), Positives = 57/113 (50%), Gaps = 1/113 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L ++ G +P + + A E++ + +++ +M+ I YHPD G N ++
Sbjct: 355 VLDDMIKKGLMPSELTYMHIMVAH-EKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLA 413
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
C + ++ EA ++ M P ++++ I+I +++ +A + KEM+L
Sbjct: 414 CKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMLL 466
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 62/147 (42%), Gaps = 18/147 (12%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCA-----------------IDQLVEAAKVLKGMSS 199
++L EM G+ PD L+ +LC + +++EA VL M+
Sbjct: 197 EVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRVGKMMEAKYVLVQMNE 256
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
A PD+ Y+ ++ + A K DA +++++M G P + AL M
Sbjct: 257 AGFEPDIVDYTNLLSGYANAGKMADAYDLLRDM-RRRGFEPNANCYTVLIQALCKVDRME 315
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
+A+++ +ER C Y +V G
Sbjct: 316 EAMKVFVEMERYECEADVVTYTALVSG 342
>gi|147742764|gb|ABQ50546.1| hypothetical protein [Brassica rapa]
Length = 650
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 74/175 (42%), Gaps = 36/175 (20%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EM + G P+ T N L+ LC +L EA +++ M S C PD+ +Y+I+I
Sbjct: 356 DLYNEMITRGIEPNTITYNSLIYGLCNDKRLDEANQMMDLMVSKGCDPDIWTYNILINGF 415
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A++ +D + + ++M L +GM+
Sbjct: 416 CKAKQVDDGMRLFRKMSL-------RGMIADTVT-------------------------- 442
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + R+ I+A K M +G P I +++GL GE + A
Sbjct: 443 ---YSTLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEA 494
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/201 (19%), Positives = 93/201 (46%), Gaps = 7/201 (3%)
Query: 146 LERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C+ + D L EM++ G + T N L+ S C+ + + A++L+ M + +
Sbjct: 272 IDNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRWDDGAQLLRDMITRKI 331
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ ++S +I ++ K +A ++ EM+ G+ P + L ++ + +A
Sbjct: 332 TPNVVTFSALIDSLVKEGKLTEAKDLYNEMI-TRGIEPNTITYNSLIYGLCNDKRLDEAN 390
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+M++ + KGC Y +++ G + ++ + M+ RG I +++G
Sbjct: 391 QMMDLMVSKGCDPDIWTYNILINGFCKAKQVDDGMRLFRKMSLRGMIADTVTYSTLIQGF 450
Query: 323 AGVGEWKLATVVRQRFAELKS 343
+ + V ++ F E+ S
Sbjct: 451 C---QSRKLIVAKKVFQEMVS 468
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 30/164 (18%), Positives = 71/164 (43%), Gaps = 1/164 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+GY P+ T N L++ LC ++ EA +++ M ++ VPDL + + ++ + + ++
Sbjct: 154 LGYEPNTVTFNTLLNGLCLEGRVFEAVELVDCMVLSQHVPDLITLNTIVNGLCLKDRVSE 213
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
AV+++ M+ N G P Q + + + A++++ +E + Y +++
Sbjct: 214 AVDLIARMMAN-GCQPNQFTYGPILNRMCKSGNTASALDLLRKMEHRKIKPHVVTYTIII 272
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ + A M +G + ++ G W
Sbjct: 273 DNLCKDGRLDDALSFFSEMETKGIKANVFTYNSLIGSFCSFGRW 316
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ CQS+ + + EM S G HP T L+ LC +L EA +L M
Sbjct: 444 STLIQGFCQSRKLIVAKKVFQEMVSQGVHPGIMTYAILLDGLCDNGELEEALGILDQMHK 503
Query: 200 AECVPDLESYSIVIGAMSTARKTNDA 225
+ D+ Y+I+I M A K +DA
Sbjct: 504 CKMELDIGIYNIIIHGMCNANKVDDA 529
>gi|222630089|gb|EEE62221.1| hypothetical protein OsJ_17008 [Oryza sativa Japonica Group]
Length = 584
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/207 (25%), Positives = 84/207 (40%), Gaps = 12/207 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRL---LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL R GC P +R+ LL + L R +V + M+ G P+ T N
Sbjct: 52 ALKTFYRASDLGCRD-PGVRVYNHLLDA--LLRENMVGAVVPVYDNMRKAGVDPNVYTYN 108
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC D++ A K+L MS C PD S+ ++ M + +A + E V
Sbjct: 109 LLIRALCQNDRVDAARKMLDEMSRKGCHPDEVSHGTIVSGMCKLGRVEEARGFLAETV-- 166
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P Q V AL MW+ ++ + ++G Y +V+ + RE +
Sbjct: 167 ----PVQASYNAVVHALCGEFRMWEVFSVVNEMVQRGLQPNVVTYTTIVDAFCKARELRM 222
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M G P + +V+G
Sbjct: 223 ACAILARMVSMGCTPNVLTFTALVKGF 249
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/219 (23%), Positives = 84/219 (38%), Gaps = 8/219 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCG 172
L +A AIL R + GC P +L +A ++ + V D L M G+ P
Sbjct: 220 LRMACAILARMVSMGCTP----NVLTFTALVKGFFEDGKVHDALSMWHWMVDEGWAPSTI 275
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ N L+ LC I L A M +P+ +YS ++ S A + A+ + EM
Sbjct: 276 SYNVLIRGLCCIGDLKGALDFFNSMKRNALLPNATTYSTLVDGFSNAGDLDGAMLIWNEM 335
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ G P + + L +A +I+ + CP + ++ +C
Sbjct: 336 K-SSGCKPNVVVYTNMIDVLCKKMMFDQAESLIDKMLMDNCPPNTVTFNTLIGRLCDCGR 394
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A GM G P + +++ GL G K A
Sbjct: 395 VGRALNVFHGMRRNGCHPNDRTYNELLHGLFREGNHKDA 433
>gi|297832604|ref|XP_002884184.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330024|gb|EFH60443.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 829
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL++L+ + C P + A R S+ A ++ M G P+ T ++
Sbjct: 342 ALSVLKEMEENNC-PADSVTYNELVAAYARAGFSKEAAVVIEMMTQKGVMPNAITYTTVI 400
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ + EA K+ M A CVP+ +Y+ V+ + ++N+ ++M+ +M N G
Sbjct: 401 DAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSMLGKKSRSNEMIKMLCDMKSN-GC 459
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYI 294
P + AL N+ M K V + F E K C GF+ + ++ C +
Sbjct: 460 FPNRA-TWNTILALCGNKGMDKFVNRV-FREMKSC--GFEPDRDTFNTLISAYGRCGSEV 515
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A K MT GF + ++ LA G+W+
Sbjct: 516 DASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 550
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 52/117 (44%), Gaps = 1/117 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D E+KS GY P T N L+ EA VLK M C D +Y+ ++ A
Sbjct: 309 DFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENNCPADSVTYNELVAAY 368
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ A + +A ++ EM+ G+MP V A + +A+++ ++ GC
Sbjct: 369 ARAGFSKEAAVVI-EMMTQKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 424
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL + G +PD T N L+ + +A ++LK + ++ PDL SY+ VI
Sbjct: 660 ILQSIHEDGLNPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 719
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+AV M+ EM G+ P + A + ++IE + + C
Sbjct: 720 RKGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMYGEIEDVIECMAKNDCRPNE 778
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+++VV+G Y AGK M F+ IK
Sbjct: 779 LTFKMVVDG------YCRAGKYSEAMD---FVSKIKT 806
>gi|302143622|emb|CBI22375.3| unnamed protein product [Vitis vinifera]
Length = 407
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 59/117 (50%), Gaps = 1/117 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM S G P+ T + L+SSLC ++ EA VLK M E PD SY +I A+
Sbjct: 264 LVAEMFSRGCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALC 323
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A+ +M M+ N G +P + AAL N +A+E+ L GCP
Sbjct: 324 KEGRLDLAIGIMDYMISN-GCLPDIVNYNTILAALCKNGNANQALEIFNKLRGMGCP 379
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 3/180 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ +L MK+ G+ PD T N ++ SLC +L A KVL + C+P + +Y+I+
Sbjct: 154 EAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKVLDQLLLDNCMPTVITYTIL 213
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEFLERK 271
I A N+A+++++EM L GL+P + + MW E ++ + +
Sbjct: 214 IEATIVEGGINEAMKLLEEM-LARGLLPDMYTYNAIIRGM-CKEGMWDEGEKLVAEMFSR 271
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
GC Y +++ A + M E+ P ++ L G LA
Sbjct: 272 GCEPNKVTYSILISSLCRFGRIDEAISVLKVMIEKELTPDTYSYDPLISALCKEGRLDLA 331
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 69/142 (48%), Gaps = 1/142 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD N ++S C ++++ A +VL M + +PD+ +Y+I+IG++ RK A+++
Sbjct: 135 PDVFAYNAVISGFCKVNRIEAATQVLNRMKARGFLPDIVTYNIMIGSLCNRRKLGLALKV 194
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ +++L+ MP + A + +A++++E + +G Y ++ G
Sbjct: 195 LDQLLLD-NCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGMC 253
Query: 289 ECREYILAGKTVMGMTERGFIP 310
+ + K V M RG P
Sbjct: 254 KEGMWDEGEKLVAEMFSRGCEP 275
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/186 (20%), Positives = 79/186 (42%), Gaps = 5/186 (2%)
Query: 146 LERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
L R C++ + L ++ + GY PD C L+ + +A++V++ + S
Sbjct: 75 LNRSCKAGKFNESLYFLECLVNKGYTPDVILCTKLIKGFFNFKNIEKASRVMEILES-HT 133
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD+ +Y+ VI + A +++ M G +P + +L R++ A+
Sbjct: 134 EPDVFAYNAVISGFCKVNRIEAATQVLNRMKAR-GFLPDIVTYNIMIGSLCNRRKLGLAL 192
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++++ L C Y +++E + A K + M RG +P + ++ G+
Sbjct: 193 KVLDQLLLDNCMPTVITYTILIEATIVEGGINEAMKLLEEMLARGLLPDMYTYNAIIRGM 252
Query: 323 AGVGEW 328
G W
Sbjct: 253 CKEGMW 258
>gi|449494638|ref|XP_004159605.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 664
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L EMK + P+ + L+ S C +++ EA ++ M + C D+ +Y+ +I
Sbjct: 325 DLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGF 384
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
T+ A E++ +M+ G P Q + + A E+ + +E+IE + + GC
Sbjct: 385 CKWGNTDKAYEILDDMI-QKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 443
Query: 277 FQGYEVVV 284
Y ++
Sbjct: 444 LNIYNTMI 451
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 144/367 (39%), Gaps = 37/367 (10%)
Query: 4 GAIKSCRSL-----VNFRPCLLQFSSL--------RSMSSLRTLEETVRAAVDAKDYQQI 50
G++K SL V F P L F+SL + M + L + A + D
Sbjct: 249 GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEP-DIVVY 307
Query: 51 PELLGSFEEACQNPNPFSFLSNFPQNH----------------RIKVIDEMLESFIPLRP 94
LLG + +A + + F L+ + + + + +DE + F ++
Sbjct: 308 NNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQG 367
Query: 95 RS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ Y L+S A IL ++ G P Q+ L E++ +
Sbjct: 368 SGCEADVVTYTTLIS-GFCKWGNTDKAYEILDDMIQKGHDP-SQLSYLCIMMAHEKKEEL 425
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ +++ EM+ IG PD N ++ +C + L EA ++ M + P L++Y ++
Sbjct: 426 EECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILM 485
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLM--PRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ + +A + KEMV GL+ P+ G + ++ AL ++ A M +
Sbjct: 486 VHGFLSQGCLVEACDYFKEMV-ERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTT 544
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
KGC + + + + A + M + +P K++ GL + +L
Sbjct: 545 KGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQL 604
Query: 331 ATVVRQR 337
A + ++
Sbjct: 605 AVEITEK 611
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 9/195 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E + ++P+
Sbjct: 219 AVEVLDEMPKYGCEPDEYVFGCL----LDALCKNGSVKEAASLFEDMRVRFNPNLRHFTS 274
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-VLN 235
L+ C +++EA VL + A PD+ Y+ ++G + A K DA +++ EM +N
Sbjct: 275 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 334
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + + +M +A+ + ++ GC Y ++ G +
Sbjct: 335 CG--PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 392
Query: 296 AGKTVMGMTERGFIP 310
A + + M ++G P
Sbjct: 393 AYEILDDMIQKGHDP 407
>gi|6630464|gb|AAF19552.1|AC007190_20 F23N19.4 [Arabidopsis thaliana]
Length = 1244
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/212 (21%), Positives = 94/212 (44%), Gaps = 8/212 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
A++++ + + G P ++ +A ++ C+++ V D K I G P+ T
Sbjct: 277 AVSLVDKMVEIGYKP----DIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYT 332
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV+ LC + +AA++L M + P++ +YS ++ A K +A E+ +EMV
Sbjct: 333 ALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-R 391
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M + P + L + + +A +M + + KGC Y ++ G + +
Sbjct: 392 MSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVED 451
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K M++RG + +++G G+
Sbjct: 452 GMKLFREMSQRGLVSNTVTYNTLIQGFFQAGD 483
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LPLALA+L + ++ G P ++ S+ L C S+ +++ ++ +M GY P+
Sbjct: 746 LPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 801
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ L ++ EA ++ M + C PDL +Y +V+ + T+ A ++ +M
Sbjct: 802 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 861
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L P + + L + M A+ + + +E KG Y ++
Sbjct: 862 EQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 920
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M ER P + +++ G+
Sbjct: 921 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 955
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + ++ C+ + + D L EM++ G P+ T + L+S LC + +A+++L
Sbjct: 870 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 929
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + PD+ ++S +I A K +A ++ EMV + P + +
Sbjct: 930 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSIDPSIVTYSSLINGFCMH 988
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ +A +M EF+ K C Y +++G + + + M++RG +
Sbjct: 989 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 1048
Query: 316 QKVVEGLAGVGEWKLA 331
+++GL G+ +A
Sbjct: 1049 NILIQGLFQAGDCDMA 1064
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL +M +GY PD T LV+ C +++ +A ++ M PD+ +Y+ +I ++
Sbjct: 245 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 304
Query: 218 TARKTNDAVEMMKEM 232
++ NDA + KE+
Sbjct: 305 KTKRVNDAFDFFKEI 319
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 36/174 (20%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P T + L++ C D+L EA ++ + M S C PD+ +Y+ +I +
Sbjct: 965 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 1024
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +E M ++G+V Y
Sbjct: 1025 RVEEGMEVFRE-------MSQRGLVGNTVT-----------------------------Y 1048
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++++G + + +A + M G P I +++GL G+ + A VV
Sbjct: 1049 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 1102
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G D T N +++ C Q+ A +L M PD + ++
Sbjct: 213 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 272
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV +G P + +L + + A + + +ERKG Y
Sbjct: 273 RVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 331
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + A + + M ++ P + +++ G+
Sbjct: 332 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 378
>gi|356513567|ref|XP_003525484.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Glycine max]
Length = 857
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 82/191 (42%), Gaps = 1/191 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V+++L EM+ G PD + N L+ + + + EA V + M +A CV + +YS++
Sbjct: 292 EKVSELLREMECGGNLPDITSYNVLLEAYAELGSIKEAMGVFRQMQAAGCVANAATYSVL 351
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +D ++ EM ++ P G + + V + + +
Sbjct: 352 LNLYGKHGRYDDVRDLFLEMKVS-NTDPDAGTYNILIQVFGEGGYFKEVVTLFHDMAEEN 410
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Q YE ++ C + Y A K ++ M E+G +P K V+E ++ A
Sbjct: 411 VEPNMQTYEGLIFACGKGGLYEDAKKILLHMNEKGVVPSSKAYTGVIEAFGQAALYEEAL 470
Query: 333 VVRQRFAELKS 343
V+ E+ S
Sbjct: 471 VMFNTMNEVGS 481
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQL-VEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ EM+ G PD T N L+ + CA L EA V + M+ + VPD+ +YS ++
Sbjct: 227 LFAEMRHEGIQPDVITYNTLLGA-CAHRGLGDEAEMVFRTMNESGIVPDINTYSYLVQTF 285
Query: 217 STARKTNDAVEMMKEM 232
+ E+++EM
Sbjct: 286 GKLNRLEKVSELLREM 301
>gi|449463822|ref|XP_004149630.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g49730-like [Cucumis sativus]
Length = 641
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 61/128 (47%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L EMK + P+ + L+ S C +++ EA ++ M + C D+ +Y+ +I
Sbjct: 302 DLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGF 361
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
T+ A E++ +M+ G P Q + + A E+ + +E+IE + + GC
Sbjct: 362 CKWGNTDKAYEILDDMI-QKGHDPSQLSYLCIMMAHEKKEELEECMELIEEMRKIGCVPD 420
Query: 277 FQGYEVVV 284
Y ++
Sbjct: 421 LNIYNTMI 428
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 74/367 (20%), Positives = 144/367 (39%), Gaps = 37/367 (10%)
Query: 4 GAIKSCRSL-----VNFRPCLLQFSSL--------RSMSSLRTLEETVRAAVDAKDYQQI 50
G++K SL V F P L F+SL + M + L + A + D
Sbjct: 226 GSVKEAASLFEDMRVRFNPNLRHFTSLLYGWCREGKIMEAKHVLVQIKEAGFEP-DIVVY 284
Query: 51 PELLGSFEEACQNPNPFSFLSNFPQNH----------------RIKVIDEMLESFIPLRP 94
LLG + +A + + F L+ + + + + +DE + F ++
Sbjct: 285 NNLLGGYAQAGKMRDAFDLLAEMKKVNCGPNAASFTILIQSFCKTEKMDEAMRIFTEMQG 344
Query: 95 RS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ Y L+S A IL ++ G P Q+ L E++ +
Sbjct: 345 SGCEADVVTYTTLIS-GFCKWGNTDKAYEILDDMIQKGHDP-SQLSYLCIMMAHEKKEEL 402
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ +++ EM+ IG PD N ++ +C + L EA ++ M + P L++Y ++
Sbjct: 403 EECMELIEEMRKIGCVPDLNIYNTMIRLVCKLGDLKEAVRLWGEMQAGGLNPGLDTYILM 462
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLM--PRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ + +A + KEMV GL+ P+ G + ++ AL ++ A M +
Sbjct: 463 VHGFLSQGCLVEACDYFKEMV-ERGLLSAPQYGTLKELTNALLRAEKLEMAKNMWSCMTT 521
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
KGC + + + + A + M + +P K++ GL + +L
Sbjct: 522 KGCELNVSAWTIWIHALFSNGHVKEACSYCLDMMDADLMPQPDTFAKLMRGLKKLFHRQL 581
Query: 331 ATVVRQR 337
A + ++
Sbjct: 582 AVEITEK 588
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 44/195 (22%), Positives = 84/195 (43%), Gaps = 9/195 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E + ++P+
Sbjct: 196 AVEVLDEMPKYGCEPDEYVFGCL----LDALCKNGSVKEAASLFEDMRVRFNPNLRHFTS 251
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-VLN 235
L+ C +++EA VL + A PD+ Y+ ++G + A K DA +++ EM +N
Sbjct: 252 LLYGWCREGKIMEAKHVLVQIKEAGFEPDIVVYNNLLGGYAQAGKMRDAFDLLAEMKKVN 311
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + + +M +A+ + ++ GC Y ++ G +
Sbjct: 312 CG--PNAASFTILIQSFCKTEKMDEAMRIFTEMQGSGCEADVVTYTTLISGFCKWGNTDK 369
Query: 296 AGKTVMGMTERGFIP 310
A + + M ++G P
Sbjct: 370 AYEILDDMIQKGHDP 384
>gi|145336953|ref|NP_176455.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806497|sp|Q3ECK2.2|PPR92_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62680, mitochondrial; Flags: Precursor
gi|332195872|gb|AEE33993.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 548
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/188 (22%), Positives = 83/188 (44%), Gaps = 4/188 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+++ V D K I G P+ T LV+ LC + +AA++L M
Sbjct: 194 NAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIK 253
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ P++ +YS ++ A K +A E+ +EMV M + P + L + +
Sbjct: 254 KKITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPDIVTYSSLINGLCLHDRID 312
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y ++ G + + K M++RG + ++
Sbjct: 313 EANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLI 372
Query: 320 EGLAGVGE 327
+G G+
Sbjct: 373 QGFFQAGD 380
Score = 45.8 bits (107), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 41/75 (54%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL +M +GY PD T LV+ C +++ +A ++ M PD+ +Y+ +I ++
Sbjct: 142 ILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVSLVDKMVEIGYKPDIVAYNAIIDSLC 201
Query: 218 TARKTNDAVEMMKEM 232
++ NDA + KE+
Sbjct: 202 KTKRVNDAFDFFKEI 216
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G D T N +++ C Q+ A +L M PD + ++
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV +G P + +L + + A + + +ERKG Y
Sbjct: 170 RVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + A + + M ++ P + +++ G+
Sbjct: 229 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
>gi|15228763|ref|NP_188886.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75223290|sp|Q6NQ83.1|PP247_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At3g22470, mitochondrial; Flags: Precursor
gi|34365775|gb|AAQ65199.1| At3g22470 [Arabidopsis thaliana]
gi|51968798|dbj|BAD43091.1| hypothetical protein [Arabidopsis thaliana]
gi|332643122|gb|AEE76643.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 619
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 36/215 (16%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G PD T N L+ C + L EA ++ M S C PD+ +YSI+I + A+
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 221 KTNDAVEMMKEMVLNMGLMPR------------------------QGMVIK--------- 247
+ +D + + +E + + GL+P Q MV +
Sbjct: 400 RVDDGMRLFRE-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 248 --VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L N E+ KA+E+ E +++ +G Y +++ G + A +++
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 306 RGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+G P + ++ GL G A ++ ++ E
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 7/204 (3%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ S D L EM+ G D T + L+ LC + + AK+L+ M
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+PD+ ++S +I K +A E+ EM+ G+ P + +
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLH 367
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y +++ + + + ++ +G IP +V
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 320 EGLAGVGEWKLATVVRQRFAELKS 343
G G+ A ++ F E+ S
Sbjct: 428 LGFCQSGKLNAA---KELFQEMVS 448
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V D + + G PD T N ++ LC L EA + + M C PD
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+I+I A +VE+++EM
Sbjct: 561 FTYNILIRAHLGGSGLISSVELIEEM 586
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+GY PD T + LV+ C ++ EA ++ M + PDL + S +I + + ++
Sbjct: 134 LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 193
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ ++ MV G P + V L + A+++ +E + Y +V+
Sbjct: 194 ALVLIDRMV-EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ + + A M +G + ++ GL G+W
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296
>gi|225454300|ref|XP_002275491.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial [Vitis vinifera]
gi|297745328|emb|CBI40408.3| unnamed protein product [Vitis vinifera]
Length = 765
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/208 (24%), Positives = 92/208 (44%), Gaps = 9/208 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + L +GC P + L S L + + + +L +MK G+ PD + N L+
Sbjct: 505 AMELFDEMLEAGCSPDAIVYYTLISG-LSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLI 563
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C ++L EA ++LK M +A PD +Y+ +I S + A +MK+MV GL
Sbjct: 564 NGFCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKMV-KEGL 622
Query: 239 MPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYI 294
+P V+ A + A N + +A+++ + P Y +++ +
Sbjct: 623 VP---TVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQVD 679
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
LA + M +G P + +GL
Sbjct: 680 LALSLMDDMKVKGVKPNTNTFNAMFKGL 707
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 106/250 (42%), Gaps = 9/250 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
+++ DEMLE+ S I Y Y L L L A +L + +G P +
Sbjct: 506 MELFDEMLEAGC-----SPDAIVY-YTLISGLSQAGKLDRASFVLSKMKEAGFSPDIVSF 559
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L++ R+ + ++L EM++ G PD T N L+S A +++K M
Sbjct: 560 NVLING--FCRKNKLDEAYEMLKEMENAGIKPDGVTYNTLISHFSKTGDFSTAHRLMKKM 617
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
VP + +Y +I A ++A+++ ++M + P + + +L +
Sbjct: 618 VKEGLVPTVVTYGALIHAYCLNGNLDEAMKIFRDMSSTSKVPPNTVIYNILINSLCRKNQ 677
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A+ +++ ++ KG + + +G E A + + MTE P +
Sbjct: 678 VDLALSLMDDMKVKGVKPNTNTFNAMFKGLQEKNWLSKAFELMDRMTEHACNPDYITMEI 737
Query: 318 VVEGLAGVGE 327
+ E L+ VGE
Sbjct: 738 LTEWLSAVGE 747
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 67/153 (43%), Gaps = 3/153 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G + T L+ + C ++ + +A ++ M A C PD Y +I +S A
Sbjct: 476 EMQGKGLKGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAG 535
Query: 221 KTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
K + A ++ +M G P + + R N+ + +A EM++ +E G
Sbjct: 536 KLDRASFVLSKMK-EAGFSPDIVSFNVLINGFCRKNK-LDEAYEMLKEMENAGIKPDGVT 593
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
Y ++ + ++ A + + M + G +P +
Sbjct: 594 YNTLISHFSKTGDFSTAHRLMKKMVKEGLVPTV 626
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 64/157 (40%), Gaps = 7/157 (4%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T N L+ C + A ++ M+ P++ + + ++ M + N AVE
Sbjct: 414 PNTVTYNCLIDGYCKASMIEAARELFDQMNKDGVPPNVVTLNTLVDGMCKHGRINGAVEF 473
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
EM GL +G + A +RA + KA+E+ + + GC Y ++
Sbjct: 474 FNEMQ-GKGL---KGNAVTYTALIRAFCNVNNIEKAMELFDEMLEAGCSPDAIVYYTLIS 529
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
G + + A + M E GF P I ++ G
Sbjct: 530 GLSQAGKLDRASFVLSKMKEAGFSPDIVSFNVLINGF 566
Score = 37.7 bits (86), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 69/173 (39%), Gaps = 2/173 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N L+ LC + + E +++ M S C+P+ +Y+ +I A A E
Sbjct: 378 PDVITYNTLIDGLCKVGRQEEGLGLVERMRSQPRCMPNTVTYNCLIDGYCKASMIEAARE 437
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ +M + G+ P + + + + + AVE ++ KG Y ++
Sbjct: 438 LFDQMNKD-GVPPNVVTLNTLVDGMCKHGRINGAVEFFNEMQGKGLKGNAVTYTALIRAF 496
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E G P V ++ GL+ G+ A+ V + E
Sbjct: 497 CNVNNIEKAMELFDEMLEAGCSPDAIVYYTLISGLSQAGKLDRASFVLSKMKE 549
>gi|302792409|ref|XP_002977970.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
gi|300153991|gb|EFJ20627.1| hypothetical protein SELMODRAFT_108199 [Selaginella moellendorffii]
Length = 695
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 71/168 (42%), Gaps = 5/168 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G P+ N L+S LC L EA LK M C P++ SY+I+I AR
Sbjct: 1 MLEAGLFPNAILYNNLISCLCKAGMLAEAESYLKRMPQ-HCAPNVVSYNIIIDGYCKARN 59
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
A+ ++EM +G P + + + KA+++ + KGC +
Sbjct: 60 IEKALAFLREME-ELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFN 118
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
V++ G R+ A + M RG P + ++ AG+ +WK
Sbjct: 119 VLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMI---AGLCKWK 163
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 61/117 (52%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
ALA L+ G P P S+ ++ C++ +V+ D+ EM + G PD N
Sbjct: 63 ALAFLREMEELGHPPTPHA----YSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVNFN 118
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+S L ++ EA ++ + M+S C PD+ +Y+ +I + +K ++AV +++ M
Sbjct: 119 VLLSGLWRARKIHEARELFRSMNSRGCKPDVVTYNTMIAGLCKWKKLDEAVFLLERM 175
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 48/92 (52%), Gaps = 9/92 (9%)
Query: 142 SSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
SSAW L +R QS + P+ T L+SSLC DQ+ EA K+L M
Sbjct: 412 SSAWMLFKRMQSGKNDKVP--------APNMFTYEILISSLCKTDQVEEAFKLLSAMRDK 463
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
VP L+ + +++ ++ A + +DA E+ KEM
Sbjct: 464 GFVPSLKIWEVLLSRLARAGRLDDAFELYKEM 495
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 51/115 (44%), Gaps = 3/115 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ + GC P + +LLS W R+ ++ M S G PD T N +
Sbjct: 98 AMDVFAEMPAKGCEPDIVNFNVLLSGLWRARKIHE--ARELFRSMNSRGCKPDVVTYNTM 155
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ LC +L EA +L+ M + P +Y+ +I + + A E+ ++M
Sbjct: 156 IAGLCKWKKLDEAVFLLERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKM 210
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/176 (21%), Positives = 79/176 (44%), Gaps = 9/176 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM+ G P T N L+ L + +L +A ++ M +PD SY+++I
Sbjct: 311 EMFQEMRGRGISPTVVTYNTLLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRGF 370
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG---- 272
TN+A + ++M+ + ++ + ++ E W + M+ + G
Sbjct: 371 CANGDTNEAYCLFQDMIKDGIVLNTWTYNFMIVGFIKD--EAWSSAWMLFKRMQSGKNDK 428
Query: 273 --CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
P F YE+++ + + A K + M ++GF+P +K+ + ++ LA G
Sbjct: 429 VPAPNMFT-YEILISSLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSRLARAG 483
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 49/99 (49%), Gaps = 1/99 (1%)
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
VEAAK++ M + PD +YSI+I + AR+ +A EM +EM G+ P
Sbjct: 272 VEAAKLVTEMMGKKIAPDFYAYSILINGLCKARRPGEAKEMFQEM-RGRGISPTVVTYNT 330
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L + ++ A+E+ F+ +G Y +++ G
Sbjct: 331 LLEGLLSTAKLQDAMELTYFMLDQGRLPDTCSYNLMIRG 369
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 55/283 (19%), Positives = 108/283 (38%), Gaps = 8/283 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAY 102
A++ ++ L EE P P ++ S + + + ++ F + + P I
Sbjct: 57 ARNIEKALAFLREMEELGHPPTPHAYSSIVQSFCKTGNVSKAMDVFAEMPAKGCEPDIVN 116
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILL 160
+L L + A + + GC P ++ + + C+ + + A LL
Sbjct: 117 FNVLLSGLWRARKIHEARELFRSMNSRGCKP----DVVTYNTMIAGLCKWKKLDEAVFLL 172
Query: 161 E-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
E MK P T L+ LC +L +A +V + M+ C +YS++ + A
Sbjct: 173 ERMKQEDVSPTFVTYTTLIDHLCKFTRLQQAYEVFEKMAEGPCACTEPAYSVLFNKLQRA 232
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
K +A + +M M + V + + +A +++ + K F
Sbjct: 233 GKLVEASRVYSDMCRKNVCMTDNTYSLVVLGLSKMDGGNVEAAKLVTEMMGKKIAPDFYA 292
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++ G + R A + M RG P + ++EGL
Sbjct: 293 YSILINGLCKARRPGEAKEMFQEMRGRGISPTVVTYNTLLEGL 335
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 80/193 (41%), Gaps = 3/193 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
Y+ L+S +L + A +L G VP +I +L S L R + ++
Sbjct: 435 FTYEILIS-SLCKTDQVEEAFKLLSAMRDKGFVPSLKIWEVLLSR-LARAGRLDDAFELY 492
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM I G+ N L+ + + EA LK M+ VPD +Y ++ +
Sbjct: 493 KEMSRINCQQLVGSSNILLDGILRRGSVDEAKDFLKQMTDTGIVPDKFTYDKLVVGLCWQ 552
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
K + A ++++E+V + G P + ++ AL A + A E +L G +
Sbjct: 553 GKADQARKLVEELVRD-GKRPENQGLRQLLGALCAQGDFQGAYEFYCWLPSVGVEVTLGM 611
Query: 280 YEVVVEGCLECRE 292
+ +V C R+
Sbjct: 612 HNTLVTSCCLARK 624
>gi|357499959|ref|XP_003620268.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495283|gb|AES76486.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 652
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/258 (18%), Positives = 118/258 (45%), Gaps = 9/258 (3%)
Query: 78 RIKVIDEMLESFIPLRPR--SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
++K+++E + F + + S + Y L+S L L A+ + + + P
Sbjct: 237 KVKLVNEAFDLFSEMISKGISPDVVTYSALIS-GFCILGKLNDAIDLFNKMILENIKPDV 295
Query: 136 QIRLLLSSAWLE--RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+L +A+ + + + ++V D++++ G P+ T N L+ C + ++ +A +
Sbjct: 296 YTFNILVNAFCKDGKMKEGKTVFDMMMKQ---GIKPNFVTYNSLMDGYCLVKEVNKAKSI 352
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M+ PD++SYSI+I +K ++A+ + KEM ++P + L
Sbjct: 353 FNTMAQGGVNPDIQSYSIMINGFCKIKKFDEAMNLFKEM-HRKNIIPDVVTYSSLIDGLS 411
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+ + A+++++ + +G P + Y +++ + + A + + ++G P +
Sbjct: 412 KSGRISYALQLVDQMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMY 471
Query: 314 VRQKVVEGLAGVGEWKLA 331
+++GL G+ + A
Sbjct: 472 TYSILIKGLCQSGKLEDA 489
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 78/181 (43%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++++ D+L + P+ N ++ S+C + + EA + M S PD+ +YS
Sbjct: 205 ETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMISKGISPDVVTYS 264
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I K NDA+++ +M+L + P + A + +M + + + + +
Sbjct: 265 ALISGFCILGKLNDAIDLFNKMILE-NIKPDVYTFNILVNAFCKDGKMKEGKTVFDMMMK 323
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+G F Y +++G +E A M + G P I+ ++ G + ++
Sbjct: 324 QGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQGGVNPDIQSYSIMINGFCKIKKFDE 383
Query: 331 A 331
A
Sbjct: 384 A 384
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 70/153 (45%), Gaps = 7/153 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G P T N ++ +LC I Q+ +A +L + P++ +YSI+I + +
Sbjct: 425 QMHDRGVPPTIRTYNSILDALCKIHQVDKAIALLTKLKDKGIQPNMYTYSILIKGLCQSG 484
Query: 221 KTNDAVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K DA ++ + +++ N+ + M+ N +A+ ++ +E GC
Sbjct: 485 KLEDARKVFEGLLVKGHNLNVDTYTIMIQGFCVEGLFN----EALALLSKMEDNGCIPDA 540
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ YE+++ + E +A K + M RG P
Sbjct: 541 KTYEIIILSLFKKDENDMAEKLLREMIARGVRP 573
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 46/230 (20%), Positives = 97/230 (42%), Gaps = 12/230 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P A ++ + L+ G VP I L + Q Q ++ ++G+H D +
Sbjct: 136 IPFAFSVFAKILKMGYVP-DTITFTTLIKGLCLKGQIQQAFLFHDKVVALGFHFDQISYG 194
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + + A +L+ + P++ Y+ +I +M + N+A ++ EM+ +
Sbjct: 195 TLIHGLCKVGETRAALDLLQRVDGNLVQPNVVMYNTIIDSMCKVKLVNEAFDLFSEMI-S 253
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECRE 292
G+ P V+ +A + + K + I+ + + + ++V C++
Sbjct: 254 KGISPD---VVTYSALISGFCILGKLNDAIDLFNKMILENIKPDVYTFNILVNAF--CKD 308
Query: 293 YILA-GKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ GKTV M ++G P +++G V E A + A+
Sbjct: 309 GKMKEGKTVFDMMMKQGIKPNFVTYNSLMDGYCLVKEVNKAKSIFNTMAQ 358
>gi|302783901|ref|XP_002973723.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
gi|300158761|gb|EFJ25383.1| hypothetical protein SELMODRAFT_99426 [Selaginella moellendorffii]
Length = 581
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 52/98 (53%), Gaps = 3/98 (3%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+LL +A ++ C+++ V D +L EM IG PD T N L+ LC + + +A ++
Sbjct: 292 VLLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFS 351
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
M C PD+ SYS+V+ + K +DA + M+
Sbjct: 352 TMVDNGCAPDIVSYSVVLNGLCKTNKVHDARVLFDRMI 389
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/284 (24%), Positives = 114/284 (40%), Gaps = 25/284 (8%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPR--SRPKIAYDYLLSYT 109
E++ E NP+ ++ + R +DE E F + R S +AY+ L++
Sbjct: 31 EMVEEMTEKGVNPDVATYTIIVDRLCRAGKVDEADELFHKMIERGCSANTVAYNALIN-G 89
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP 169
L + A +L+ G P I + L R + M S GY P
Sbjct: 90 LCKDENIERAYKLLEEMASKGYEP-DNITYNTILSGLCRMGKVSEAKQFFDSMPSRGYSP 148
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVPDLESYSIVIGAMSTARKTNDAVE 227
D N L+ +L ++ EA + K M A+ PDL +Y+ +I KT++A++
Sbjct: 149 DVVAYNGLLDALYKEGKVAEAWGLFKTMDMADRKVAPDLITYNTLIDGFCRVEKTDEAMK 208
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG- 286
+ K+ V+ G MP + L M +A EM + + GC Y +V+ G
Sbjct: 209 LFKD-VIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFKKMVDSGCAPNGATYSIVLSGH 267
Query: 287 --------CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
CLE E MTE+ F P + + V++ L
Sbjct: 268 CRVGNMARCLELYEE---------MTEKRFSPDVLLCNAVIDML 302
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 74/163 (45%), Gaps = 10/163 (6%)
Query: 78 RIKVIDEMLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R++ DE ++ F + + + Y+ +L L + A + ++ + SGC P
Sbjct: 199 RVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL-LGLARKSNMDEAEEMFKKMVDSGCAPNG 257
Query: 136 QIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
S L C+ ++A ++ EM + PD CN ++ LC ++ +A K
Sbjct: 258 ATY----SIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAKKVDDAHK 313
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
VL+ MS VPD+ +Y+I++ + + A E+ MV N
Sbjct: 314 VLEEMSKIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDN 356
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 77/173 (44%), Gaps = 5/173 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G+ PD T + ++S LC ++ EA ++++ M+ PD+ +Y+I++ + A K
Sbjct: 1 MAEKGFEPDVVTYSTIISGLCKTGKVTEALEMVEEMTEKGVNPDVATYTIIVDRLCRAGK 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A E+ +M+ G + L + + +A +++E + KG Y
Sbjct: 61 VDEADELFHKMI-ERGCSANTVAYNALINGLCKDENIERAYKLLEEMASKGYEPDNITYN 119
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKL 330
++ G + A + M RG+ P + +++ L G+ W L
Sbjct: 120 TILSGLCRMGKVSEAKQFFDSMPSRGYSPDVVAYNGLLDALYKEGKVAEAWGL 172
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 65/154 (42%), Gaps = 1/154 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L M PD TC L+ LC + EA ++ + M V D+ ++IV+ +
Sbjct: 418 DLLDVMSEHNVLPDGVTCTTLMHGLCRDKRTDEAVRLFQYMVEKGTVADVLPHNIVLAGL 477
Query: 217 STARKTNDAVEMMKEMVLNMG-LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
K A+ K MV + G P + AL + +AV+ + + GC
Sbjct: 478 CREGKLAQALLFFKSMVKSDGEFSPDVVTYTTLVNALIEAGRVDQAVDYFQQMTGSGCAP 537
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+ Y ++ G + +I A + M E+GF+
Sbjct: 538 DYVAYNTLMNGLRKQGRHIQADRLTQAMKEKGFL 571
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 89/231 (38%), Gaps = 39/231 (16%)
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ + ++ C+ + + + K + GY PD T N ++ L + EA ++ K
Sbjct: 187 LITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSILLGLARKSNMDEAEEMFK 246
Query: 196 GMSSAECVPDLESYSIV------IGAMS-----------------------------TAR 220
M + C P+ +YSIV +G M+ A+
Sbjct: 247 KMVDSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDVLLCNAVIDMLCKAK 306
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +DA ++++EM +G +P + L + KA E+ + GC Y
Sbjct: 307 KVDDAHKVLEEMS-KIGAVPDVVTYNILLDGLCKTNLVDKAHELFSTMVDNGCAPDIVSY 365
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
VV+ G + + A M ER +P + +++GL G+ A
Sbjct: 366 SVVLNGLCKTNKVHDARVLFDRMIERKLVPDVVTFNILMDGLCKAGKLDEA 416
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 76/165 (46%), Gaps = 5/165 (3%)
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
++M PD T N L+ C +++ EA K+ K + + +PD +Y+ ++ + A
Sbjct: 176 MDMADRKVAPDLITYNTLIDGFCRVEKTDEAMKLFKDVIAKGYMPDTVTYNSIL--LGLA 233
Query: 220 RKTN--DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK+N +A EM K+MV + G P V + M + +E+ E + K
Sbjct: 234 RKSNMDEAEEMFKKMV-DSGCAPNGATYSIVLSGHCRVGNMARCLELYEEMTEKRFSPDV 292
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
V++ + ++ A K + M++ G +P + +++GL
Sbjct: 293 LLCNAVIDMLCKAKKVDDAHKVLEEMSKIGAVPDVVTYNILLDGL 337
>gi|225450452|ref|XP_002276575.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62590-like [Vitis vinifera]
Length = 730
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 85/184 (46%), Gaps = 9/184 (4%)
Query: 106 LSYTLQSLHPL---PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
L+Y +++L L LAL +R + GC P + +L S + R +SV +L EM
Sbjct: 206 LNYLIEALFELNWIDLALDQYRRMSKKGCSPNSKTFDILISGLIARNLVEKSVV-VLGEM 264
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
+ D ++ C++ Q+ E + M +++ VPDL Y ++I +S +
Sbjct: 265 IELECEADLSFYTSVIPLFCSVHQVEEGMMLFWRMRASKLVPDLLIYRVLIQCLSESLWL 324
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
+DA+ +++EM+ GL P + + + + +A EF + C G +
Sbjct: 325 DDAINLLEEMI-GCGLTPEDDVFVYIVKGFCKLGKFNEA----EFFLKDKCVFGTDPHNA 379
Query: 283 VVEG 286
++EG
Sbjct: 380 LLEG 383
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 20/174 (11%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IRLL+ + + C + S I+L + +G D LV VL
Sbjct: 533 IRLLVLACYSGTSCTNASYKAIMLGLSKLGKDSD-----ILV--------------VLSK 573
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C+ D+E+Y I++ +M +T D MV + GL+P V + + L +
Sbjct: 574 MLVEGCILDVEAYCILVQSMCALSRTEDIARFFNLMV-SEGLVPDSETVATLLSCLTKHS 632
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
++ + I L G + Y +++ G L+ A + + M E+G++P
Sbjct: 633 QLHTILTAIGKLASDGEILNSSMYNLLIIGLLKEGYKSEACRLLDLMLEKGWVP 686
>gi|15221549|ref|NP_176454.1| RNA processing factor 2 [Arabidopsis thaliana]
gi|193806496|sp|Q9SXD1.2|PPR91_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62670, mitochondrial; Flags: Precursor
gi|332195871|gb|AEE33992.1| RNA processing factor 2 [Arabidopsis thaliana]
Length = 630
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LPLALA+L + ++ G P ++ S+ L C S+ +++ ++ +M GY P+
Sbjct: 132 LPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ L ++ EA ++ M + C PDL +Y +V+ + T+ A ++ +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L P + + L + M A+ + + +E KG Y ++
Sbjct: 248 EQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M ER P + +++ G+
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + ++ C+ + + D L EM++ G P+ T + L+S LC + +A+++L
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + PD+ ++S +I A K +A ++ EMV + P + +
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSIDPSIVTYSSLINGFCMH 374
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ +A +M EF+ K C Y +++G + + + M++RG +
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 316 QKVVEGLAGVGEWKLA 331
+++GL G+ +A
Sbjct: 435 NILIQGLFQAGDCDMA 450
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 36/174 (20%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P T + L++ C D+L EA ++ + M S C PD+ +Y+ +I +
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +E M ++G+V Y
Sbjct: 411 RVEEGMEVFRE-------MSQRGLVGNTVT-----------------------------Y 434
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++++G + + +A + M G P I +++GL G+ + A VV
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 488
>gi|359488005|ref|XP_002263693.2| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 586
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 54/233 (23%), Positives = 93/233 (39%), Gaps = 6/233 (2%)
Query: 112 SLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP 169
+ + L AL+ R L P V RLL S A + Q +V + +M S G P
Sbjct: 46 NFNTLDDALSSFNRMLHMHPPPSTVDFNRLLTSIA---KTKQYPTVFSLSNQMDSFGIPP 102
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D T N L++S C +++L A VL + PD +++ +I + K DA+ +
Sbjct: 103 DVYTLNILINSFCHLNRLGFAFSVLAKILKLGHQPDTATFTTLIRGLCVEGKIGDALHLF 162
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+M+ G P + L A+ ++ +E+ C Y +++ +
Sbjct: 163 DKMI-GEGFQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCK 221
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
R+ A M +G P I ++ L + EWK T + + K
Sbjct: 222 DRQVTEAFNLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSK 274
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 4/189 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L+ LC L EA +LK + + PD++ Y+IV
Sbjct: 400 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 459
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + A ++ + + GL P + L + +A ++ ++ G
Sbjct: 460 IDGMCRAGELEAARDIFSNLS-SKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 518
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
C Y + +G L+ +E + A + + M RGF + +VE L + KL
Sbjct: 519 CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC---DDKLDQ 575
Query: 333 VVRQRFAEL 341
V+Q +E
Sbjct: 576 SVKQILSEF 584
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/327 (20%), Positives = 122/327 (37%), Gaps = 63/327 (19%)
Query: 53 LLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF-IPLRPRSRPKIAYDYLLSYTLQ 111
LL S + Q P FS LSN ++SF IP P + +L +
Sbjct: 75 LLTSIAKTKQYPTVFS-LSN------------QMDSFGIP------PDVYTLNILINSFC 115
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYH 168
L+ L A ++L + L+ G P + + C + D L +M G+
Sbjct: 116 HLNRLGFAFSVLAKILKLGHQPDTATF----TTLIRGLCVEGKIGDALHLFDKMIGEGFQ 171
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T L++ LC + A ++L+ M C PD+ Y+ +I ++ R+ +A +
Sbjct: 172 PNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAFNL 231
Query: 229 MKEMV----------------------------------LNMGLMPRQGMVIKVAAALRA 254
+MV +N +MP + V AL
Sbjct: 232 FSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCK 291
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIK 313
++ +A ++++ + +G Y +++G CL+ E A K M G+ P +
Sbjct: 292 EGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQ-SEMDEAVKVFDTMVHNGYAPNVI 350
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ G + AT + + +
Sbjct: 351 SYNTLINGYCKIQRMDKATYLFEEMCQ 377
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 80/183 (43%), Gaps = 5/183 (2%)
Query: 143 SAWLERRC-QSQ--SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C QS+ + M GY P+ + N L++ C I ++ +A + + M
Sbjct: 318 NALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ 377
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
E +P+ +Y+ ++ R DA+ + EMV + G +P + L +
Sbjct: 378 KELIPNTVTYNTLMHXCHVGR-LQDAIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLD 435
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ +++ +E Q Y +V++G E A ++ +G P ++ ++
Sbjct: 436 EAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMI 495
Query: 320 EGL 322
GL
Sbjct: 496 NGL 498
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 45/181 (24%), Positives = 80/181 (44%), Gaps = 6/181 (3%)
Query: 57 FEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQS 112
FEE CQ PN ++ + H ++ D + + P +A Y LL Y +
Sbjct: 372 FEEMCQKELIPNTVTYNTLMHXCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCKK 431
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
H L A+A+L+ S P QI ++ R + ++ DI + S G P+
Sbjct: 432 SH-LDEAMALLKTIEGSNMDPDIQIYTIVIDGMC-RAGELEAARDIFSNLSSKGLRPNVR 489
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +++ LC L EA K+ M C PD +Y+ + + ++ A+++++EM
Sbjct: 490 TYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQEM 549
Query: 233 V 233
+
Sbjct: 550 L 550
>gi|302771513|ref|XP_002969175.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
gi|300163680|gb|EFJ30291.1| hypothetical protein SELMODRAFT_90172 [Selaginella moellendorffii]
Length = 399
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/234 (23%), Positives = 104/234 (44%), Gaps = 20/234 (8%)
Query: 49 QIPELLGSFEEACQ----NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA 101
+I G EE Q +P+ F++ ++ ++ ++ DE+L+ I + +A
Sbjct: 171 EIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVA 230
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---I 158
++ L+ ++ L A +L L GC P ++ S ++ C+ V +
Sbjct: 231 FNTLVDGYCKA-QDLDRARELLSSMLEHGCAP----DVVTYSTIIDGLCRCGDVDKGFAL 285
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M S G PD T LV+ LC ++VEA +++K M C P+ +YS+V +
Sbjct: 286 LEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRLVKRMLEDGCTPNAVTYSLVFDGLCK 345
Query: 219 ARK---TNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL--RANREMWKAVEMIEF 267
K ND + +++ ++ + +++ V L RA + WK I F
Sbjct: 346 IDKLDMANDLLTSIRDKGRVTDVVAFETLLLSVKKRLLDRAAFQKWKLETSINF 399
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 102/228 (44%), Gaps = 8/228 (3%)
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILL 160
Y++ + +S +P A+ +++ C P V L+ A L + + +L
Sbjct: 57 YNFFVHALCKS-GKVPEAMEVVKNMKDGACKPDVVTFNTLI--AGLCKAGRLDEAQQVLD 113
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G+ + T N L++ L + + EA V++GM++ PD ++Y+ +I +
Sbjct: 114 EMERSGFAANLVTYNTLINGLSSAGRSGEAVLVMQGMTT---TPDTQTYNAIIHGFCKSG 170
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQG 279
+ + A ++EM G P + L + + KA E++ E + RK C
Sbjct: 171 EIDRAYGFLEEMKQRAGCSPDTFTYSILINGLCKSSNLRKADELLQEMIGRKDCCASVVA 230
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +V+G + ++ A + + M E G P + +++GL G+
Sbjct: 231 FNTLVDGYCKAQDLDRARELLSSMLEHGCAPDVVTYSTIIDGLCRCGD 278
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 75/186 (40%), Gaps = 1/186 (0%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS-AECVPDLESYSIVIG 214
+ +L M+ + PD T N ++ C ++ A L+ M A C PD +YSI+I
Sbjct: 141 GEAVLVMQGMTTTPDTQTYNAIIHGFCKSGEIDRAYGFLEEMKQRAGCSPDTFTYSILIN 200
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A E+++EM+ + +++ +A E++ + GC
Sbjct: 201 GLCKSSNLRKADELLQEMIGRKDCCASVVAFNTLVDGYCKAQDLDRARELLSSMLEHGCA 260
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y +++G C + + M RG P + +V GL G+ A +
Sbjct: 261 PDVVTYSTIIDGLCRCGDVDKGFALLEKMVSRGCKPDVVTYTVLVTGLCKAGKMVEACRL 320
Query: 335 RQRFAE 340
+R E
Sbjct: 321 VKRMLE 326
>gi|356544698|ref|XP_003540784.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 495
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 74/336 (22%), Positives = 132/336 (39%), Gaps = 50/336 (14%)
Query: 39 RAAVDAKDYQQIPELLGSFEEAC-QNPNPF-SFLSNFPQNHRIKVIDEMLESFIPLRPRS 96
R A + K ++ + L E Q+ + F + L ++ R++ +L++ L R
Sbjct: 148 RYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAHSLLKT---LTSRF 204
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLL--------LSSAW- 145
RP +L+ + P+AL +L+ ++ G P V +L + AW
Sbjct: 205 RPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEAWE 264
Query: 146 -----LERRCQSQSVA------------------DILLEMKSIGYHPDCGTCNYLVSSLC 182
+R+C+ V + EM G P+ T N L+ LC
Sbjct: 265 FYLEMKKRKCEIDVVTYTTVIHGFGVAGDVKKAKRVFHEMVKEGVVPNVATYNALIQVLC 324
Query: 183 AIDQLVEAAKVLKGMS-SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
D + A V + M+ CVP++ +Y++VI + A+ M+ M G
Sbjct: 325 KKDSVENAVVVFEEMAREGVCVPNVVTYNVVIRGLCHVGDMERALGFMERM----GEHGL 380
Query: 242 QGMVIKVAAALR---ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL---ECREYIL 295
+ V +R E+ KA+E+ + C Y V++ + + ++
Sbjct: 381 RACVQTYNVVIRYFCDAGEVEKALEVFGKMGDGSCLPNLDTYNVLISAMFVRKKSEDLVV 440
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
AGK +M M +RGF+P +V+ GL G A
Sbjct: 441 AGKLLMDMVDRGFLPRKFTFNRVLNGLVITGNQDFA 476
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 56/135 (41%), Gaps = 15/135 (11%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSA-------------WLERRCQSQSV--AD 157
L P P LAIL S P +R LS A L+ C+S+ V A
Sbjct: 135 LGPSPKTLAILAERYASNGKPHRAVRTFLSMAEHGIRQDLHSFNTLLDILCKSKRVETAH 194
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
LL+ + + PD T N L + C I + A +VLK M P + +Y+ ++
Sbjct: 195 SLLKTLTSRFRPDTVTYNILANGYCLIKRTPMALRVLKEMVQRGIEPTMVTYNTMLKGYF 254
Query: 218 TARKTNDAVEMMKEM 232
+ + +A E EM
Sbjct: 255 RSNQIKEAWEFYLEM 269
>gi|356518398|ref|XP_003527866.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Glycine max]
Length = 603
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/243 (23%), Positives = 103/243 (42%), Gaps = 43/243 (17%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L A+ +L++ + GC+P L + L CQ + + + L M S G +PD
Sbjct: 365 LGRAIDVLEKMPKHGCMP----NSLSYNPLLHGFCQEKKMDRAIEYLEIMVSRGCYPDIV 420
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+++LC + A ++L +SS C P L +Y+ VI ++ KT A E+++EM
Sbjct: 421 TYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGKTEYAAELLEEM 480
Query: 233 VLNMGLMPR---------------------------QGMVIKVAA--------ALRANRE 257
GL P +G+ IK +A L ++
Sbjct: 481 -RRKGLKPDIITYSTLLRGLGCEGKVDEAIKIFHDMEGLSIKPSAVTYNAIMLGLCKAQQ 539
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+A++ + ++ KGC Y +++EG + A + + + RGF+ Q
Sbjct: 540 TSRAIDFLAYMVEKGCKPTKATYTILIEGIADEGLAEEALELLNELCSRGFVKKSSAEQV 599
Query: 318 VVE 320
V+
Sbjct: 600 AVK 602
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 91/215 (42%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L A+ L GC P ++ + L C + D +L +M G P
Sbjct: 295 LDEAIKFLNNMPLYGCQP----NVITHNIILRSMCSTGRWMDAERLLADMLRKGCSPSVV 350
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ LC L A VL+ M C+P+ SY+ ++ +K + A+E + E+
Sbjct: 351 TFNILINFLCRKRLLGRAIDVLEKMPKHGCMPNSLSYNPLLHGFCQEKKMDRAIEYL-EI 409
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+++ G P + AL + + AVE++ L KGC Y V++G + +
Sbjct: 410 MVSRGCYPDIVTYNTLLTALCKDGKADAAVEILNQLSSKGCSPVLITYNTVIDGLTKVGK 469
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + + M +G P I ++ GL G+
Sbjct: 470 TEYAAELLEEMRRKGLKPDIITYSTLLRGLGCEGK 504
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 55/114 (48%), Gaps = 4/114 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A I++ SG VP ++ + + C+S + L ++ + PD T N ++
Sbjct: 161 ATRIMEILENSGAVP----DVITYNVLIGGYCKSGEIDKALQVLERMSVAPDVVTYNTIL 216
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
SLC +L EA +VL EC PD+ +Y+I+I A A++++ EM
Sbjct: 217 RSLCDSGKLKEAMEVLDRQMQRECYPDVITYTILIEATCNDSGVGQAMKLLDEM 270
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/215 (21%), Positives = 98/215 (45%), Gaps = 15/215 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
L L+R + G +P ++ ++ + C+S + I+ +++ G PD T N
Sbjct: 126 GLKFLERMIYQGDIP----DVIACTSLIRGFCRSGKTRKATRIMEILENSGAVPDVITYN 181
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C ++ +A +VL+ MS A PD+ +Y+ ++ ++ + K +A+E++ +
Sbjct: 182 VLIGGYCKSGEIDKALQVLERMSVA---PDVVTYNTILRSLCDSGKLKEAMEVLDRQ-MQ 237
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
P + A + + +A+++++ + +KGC Y V++ G C+E L
Sbjct: 238 RECYPDVITYTILIEATCNDSGVGQAMKLLDEMRKKGCKPDVVTYNVLINGI--CKEGRL 295
Query: 296 --AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
A K + M G P + ++ + G W
Sbjct: 296 DEAIKFLNNMPLYGCQPNVITHNIILRSMCSTGRW 330
>gi|356497981|ref|XP_003517834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 543
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 91/215 (42%), Gaps = 14/215 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
AL+ L++ C + + SA ++ C+ V D+ +M G P+ T N
Sbjct: 150 ALSYLKKMEEQNC----NLDVTAYSAVVDGLCKDGMVFEALDLFSQMTGKGIQPNLFTYN 205
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC D+ EAA +L M +PD+++++++ G + A K +
Sbjct: 206 CLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRFLKTGMISRA----KSIFSF 261
Query: 236 MGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
MG M + V+ + + A+ +M A+E+ + + RKGC Y ++ G E +
Sbjct: 262 MGHMGIEHNVVTYNSIIGAHCMLNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKN 321
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + M G P + ++ G G+
Sbjct: 322 MNKAMYFLGEMVNNGLDPDVVTWSTLIGGFCKAGK 356
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 99/215 (46%), Gaps = 12/215 (5%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L+ + A+ + +R GC+P L W E + ++++ L EM + G PD
Sbjct: 284 LNQMKDAMEVFDLMIRKGCLPNIVTYNSLIHGWCETKNMNKAMY-FLGEMVNNGLDPDVV 342
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T + L+ C + V A ++ M +PDL++ +I++ + ++A+ + +E+
Sbjct: 343 TWSTLIGGFCKAGKPVAAKELFFVMHKHGQLPDLQTCAIILDGLFKCHFHSEAMSLFREL 402
Query: 233 -VLNMGLMPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+N L ++I + + ++ ++ A+E+ +L KG I Y +++ G
Sbjct: 403 EKMNSDL----DIIIYSIILNGMCSSGKLNDALELFSYLSSKGVKIDVVTYNIMINGL-- 456
Query: 290 CREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
C+E +L A +M M E G P V+GL
Sbjct: 457 CKEGLLDDAEDLLMKMEENGCPPDECTYNVFVQGL 491
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 39/191 (20%), Positives = 77/191 (40%), Gaps = 10/191 (5%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
+P ++ ++ L L+ ++L + G P ++ + + C +VA
Sbjct: 58 KPNVSTHNIVINCLCRLNHTVFGFSVLGLMFKIGVEP----SIVTFTTIVNGLCVEGNVA 113
Query: 157 D---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ +K +GY D T +++ LC + A LK M C D+ +YS V+
Sbjct: 114 QAIRFVDHLKDMGYESDRYTRGAIINGLCKVGHSSAALSYLKKMEEQNCNLDVTAYSAVV 173
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLERKG 272
+ +A+++ +M G+ P + L N + WK A ++ + RKG
Sbjct: 174 DGLCKDGMVFEALDLFSQMT-GKGIQPNLFTYNCLIHGL-CNFDRWKEAAPLLANMMRKG 231
Query: 273 CPIGFQGYEVV 283
Q + V+
Sbjct: 232 IMPDVQTFNVI 242
>gi|413932624|gb|AFW67175.1| hypothetical protein ZEAMMB73_588183 [Zea mays]
Length = 520
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M+S G PD T L+ +C + +L A +VL M A PD+ +Y+ +
Sbjct: 314 ELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVF 373
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ RK +DA+E+ + M+ P + E +A+++ ++++ C
Sbjct: 374 CSHRKADDALELCERMI-EAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDKRRCQRA 432
Query: 277 FQGYEVVVEGCLECRE 292
YE+++ G +C E
Sbjct: 433 IDTYEIMIYGLFDCGE 448
>gi|413938248|gb|AFW72799.1| hypothetical protein ZEAMMB73_717335 [Zea mays]
Length = 501
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/260 (23%), Positives = 98/260 (37%), Gaps = 52/260 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH-----PDCGT 173
AL IL++ + SG P ++ + R Q Q D L+MK G + PD +
Sbjct: 228 ALDILRQMVESGIAPTKATYNIILKGFF-RSGQLQHAWDFFLQMKRRGSNDENCKPDVVS 286
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L QL +A KV MS C P +Y+ +I DAV + +MV
Sbjct: 287 YTTVLHGLGVAGQLDKARKVFDEMSIEGCKPSTATYNALIQVTCKKGNLEDAVAVFDDMV 346
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLE- 289
G +P V+ +R K V ++ L+R +GC Q Y V++ LE
Sbjct: 347 -RKGYIPN---VVTYTVLIRGLCHAGKVVRAMKLLDRMKSEGCEPNVQTYNVLIRYSLEE 402
Query: 290 --------------------------------------CREYILAGKTVMGMTERGFIPY 311
+ +A + V+ M +RG++P
Sbjct: 403 GEIEKGLDLFETMSKGEECLPNQDTYNIIISAMFVRKRAEDMAVAARMVVEMVDRGYLPR 462
Query: 312 IKVRQKVVEGLAGVGEWKLA 331
+ +V+ GL G +L+
Sbjct: 463 KFMFNRVLNGLMLTGNQELS 482
>gi|359488007|ref|XP_002263892.2| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Vitis vinifera]
Length = 539
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/178 (24%), Positives = 83/178 (46%), Gaps = 7/178 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM + G PD T N L+ +LC + + +L M ++ +P++ S +IV+ A+
Sbjct: 182 NLFSEMIAKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVKSKIMPNVVSLNIVVDAL 241
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGC 273
K +A +++ +M++ G+ P V+ AA + + EM +AV++ + + R GC
Sbjct: 242 CKEGKVTEAHDVV-DMMIQGGVEPD---VVTYAALMDGHCLRSEMDEAVKVFDMMVRNGC 297
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + + A M + IP ++ GL VG + A
Sbjct: 298 VCNVVSYNTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDA 355
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 32/152 (21%), Positives = 64/152 (42%), Gaps = 1/152 (0%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L++ C I ++ +A + + M E +P+ +YS +I + + DA+ + EMV
Sbjct: 305 NTLINGYCKIQRIDKAMYLFEEMCRQELIPNTMTYSTLIHGLCHVGRLQDAIALFNEMVA 364
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G +P + L N + +A+ +++ +E Q Y + ++G +
Sbjct: 365 -CGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIAIDGMCRAGDLE 423
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + RG P + ++ GL G
Sbjct: 424 AARDLFSNLAPRGLQPDVWTHNIMIRGLCKRG 455
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
+ Y LL Y ++ H L A+A+L+ S P Q+ + ++ C++ ++
Sbjct: 372 VTYSILLDYLCKN-HRLAEAMALLKAIEGSNLDPDVQVY----NIAIDGMCRAGDLEAAR 426
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + G PD T N ++ LC L EA+K+ + M C+ + +Y+ + +
Sbjct: 427 DLFSNLAPRGLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENGCLRNGCTYNTITQGL 486
Query: 217 STARKTNDAVEMMKEMV 233
KT+ A+++++EM+
Sbjct: 487 LQNNKTSRAIQLLEEML 503
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 77/189 (40%), Gaps = 4/189 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G P+ T + L+ LC +L EA +LK + + PD++ Y+I
Sbjct: 353 QDAIALFNEMVACGQIPNLVTYSILLDYLCKNHRLAEAMALLKAIEGSNLDPDVQVYNIA 412
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A A ++ + GL P + L + +A ++ ++ G
Sbjct: 413 IDGMCRAGDLEAARDLFSNLAPR-GLQPDVWTHNIMIRGLCKRGLLDEASKLFREMDENG 471
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
C Y + +G L+ + A + + M RGF + +V+ L+ G L
Sbjct: 472 CLRNGCTYNTITQGLLQNNKTSRAIQLLEEMLARGFSADVSTTALLVKMLSDDG---LDQ 528
Query: 333 VVRQRFAEL 341
V+Q E
Sbjct: 529 SVKQILCEF 537
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 5/166 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G+ PD T LV LC + ++ EA V M P++ +Y ++ +
Sbjct: 113 VLAKILKLGHQPDTATFTTLVRGLCVVGKIGEALDVFDKMVGEGFQPNVVTYGTLMNGLC 172
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCPI 275
R+ +A+ + EM+ G+ P + AL N WK V + E ++ K P
Sbjct: 173 KDRQLTEALNLFSEMIAK-GISPDIFTYNSLIHAL-CNLCEWKHVTTLLNEMVKSKIMP- 229
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+VV+ + + A V M + G P + +++G
Sbjct: 230 NVVSLNIVVDALCKEGKVTEAHDVVDMMIQGGVEPDVVTYAALMDG 275
>gi|357131801|ref|XP_003567522.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Brachypodium distachyon]
Length = 585
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 49/81 (60%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A+++ M+S G+ PD T + LV LC ++ EA KVL M + C PDL++++++I
Sbjct: 346 AAEVMESMRSEGHQPDNITYSQLVFGLCKANKCDEARKVLVEMENEGCAPDLKTWTMLIQ 405
Query: 215 AMSTARKTNDAVEMMKEMVLN 235
TA + + A++ + EM+ N
Sbjct: 406 GHCTAGEVDKALQYLTEMIEN 426
>gi|413942671|gb|AFW75320.1| hypothetical protein ZEAMMB73_530230 [Zea mays]
Length = 542
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 78/175 (44%), Gaps = 2/175 (1%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD L+ C +L +AA+++ M +A P+ +YS+VI A RK+ +A
Sbjct: 265 GRRPDATMYTVLIDGYCHHRKLQDAARIMDEMGAAGVQPNEVTYSVVIEACCKERKSTEA 324
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++ +EM L G +P + KV L + + +A EM + +K P ++
Sbjct: 325 RDLTREM-LGAGYVPDTPLCAKVVDVLCQDGKAGEANEMWRQMVKKSVPPDNTVVSTLIY 383
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ + + + + ERGF+P + ++ GL GE + A V E
Sbjct: 384 WLCK-KGMVQEARKLFDELERGFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVE 437
Score = 37.7 bits (86), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 1/89 (1%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL ++ Q + E++ G+ P T N L+ LC +L EA +V M P
Sbjct: 384 WLCKKGMVQEARKLFDELER-GFLPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEP 442
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ +Y +I K+N+ + KEM+
Sbjct: 443 NAMTYEALIKGFCKIGKSNEGYALFKEMM 471
>gi|295831101|gb|ADG39219.1| AT5G43820-like protein [Capsella grandiflora]
Length = 169
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIKHKGSVPDANVYNAMICNFISARDFDESMXYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G +P G+V L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCKISESAYKLLLK 148
>gi|357111070|ref|XP_003557338.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Brachypodium distachyon]
Length = 878
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V ++L EMK HP T +V L ID+L EA + + S
Sbjct: 599 NAVVDGLCKSGKVDKAYEVLEEMKVKHVHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKS 658
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +++EM + GL P + AL E+
Sbjct: 659 KGIELNVILYSSLIDGFGKVGRIDEAYLILEEM-MKKGLTPNVYTWNSLMDALVKTEEID 717
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ C Y +++ G ++Y A M ++G IP + ++
Sbjct: 718 EALICFQSMKEMKCSPNTYTYSILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMI 777
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA VG A + +RF
Sbjct: 778 SGLAKVGNITDAYSLFERF 796
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 77/185 (41%), Gaps = 1/185 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I +MKS G+ PD + + L+ L Q E + + + MS D +Y+ V+ +
Sbjct: 547 IFEDMKSFGFLPDVRSYSILIHGLTKAGQARETSNIFQAMSQQGFALDARAYNAVVDGLC 606
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ K + A E+++EM + + P + L + +A + E + KG +
Sbjct: 607 KSGKVDKAYEVLEEMKVKH-VHPTVATYGSIVDGLAKIDRLDEAYMLFEEAKSKGIELNV 665
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +++G + A + M ++G P + +++ L E A + Q
Sbjct: 666 ILYSSLIDGFGKVGRIDEAYLILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQS 725
Query: 338 FAELK 342
E+K
Sbjct: 726 MKEMK 730
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 687 ILEEMMKKGLTPNVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYSILINGLC 746
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K N A +EM GL+P + + L + A + E + G
Sbjct: 747 RVQKYNKAFVFWQEMQ-KQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTNGGIPDS 805
Query: 278 QGYEVVVEG 286
+ ++EG
Sbjct: 806 ASFNALIEG 814
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 66/137 (48%), Gaps = 3/137 (2%)
Query: 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
S P A+D ++ Y L+SL LA S P+P +L + +
Sbjct: 69 SAPAPAHDVVV-YVLRSLKNPSLAAPFFLLASASSSQPLPPDAYNAVLPFLSHDLAA--L 125
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+L EM +GY C LV++L +L +A +V+ M + P +Y+++IGA
Sbjct: 126 EKVLEEMSHLGYGLPNPACAALVATLVRSRRLEDAFRVIGAMRHLKFRPPFSAYTVLIGA 185
Query: 216 MSTARKTNDAVEMMKEM 232
++ AR+ A+E++++M
Sbjct: 186 LAEARQPERALELLRQM 202
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 21/73 (28%), Positives = 38/73 (52%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G P+ + N +V LC +QL EA ++ + S C P+ +Y +I +
Sbjct: 410 EMELAGLFPNLLSVNIMVDRLCKANQLEEAHRIFESASERGCNPNSVTYCSLIDGLGKKG 469
Query: 221 KTNDAVEMMKEMV 233
K +DA + ++M+
Sbjct: 470 KIDDAYRLFEKML 482
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/158 (18%), Positives = 69/158 (43%), Gaps = 8/158 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A IL+ ++ G P + ++ ++ +++ + + L+ MK + P+ T +
Sbjct: 684 AYLILEEMMKKGLTP----NVYTWNSLMDALVKTEEIDEALICFQSMKEMKCSPNTYTYS 739
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + + +A + M +P++ +Y+ +I ++ DA + + N
Sbjct: 740 ILINGLCRVQKYNKAFVFWQEMQKQGLIPNVVTYTTMISGLAKVGNITDAYSLFERFKTN 799
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
G+ + ANR M +A ++ E +GC
Sbjct: 800 GGIPDSASFNALIEGMSNANRPM-EAYQVFEETRLRGC 836
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 27/125 (21%), Positives = 60/125 (48%), Gaps = 2/125 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
E+K+ G PD + +V LC +L EA ++ M + VP +Y+ +I +A
Sbjct: 271 ELKAHGLRPDDVSYTSMVWVLCKAGRLGEAEELFGQMEAERDVPCAYAYNTMIMGYGSAE 330
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DA +++ E + G +P + L R++ +A+ + + +++ P Y
Sbjct: 331 RFDDAYKLL-ERLRERGCIPSVVSFNSILTCLGKKRKVDEALTLFDVMKKDAKP-NISTY 388
Query: 281 EVVVE 285
++++
Sbjct: 389 NIIID 393
>gi|297812025|ref|XP_002873896.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319733|gb|EFH50155.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 507
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 112/249 (44%), Gaps = 11/249 (4%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
R K E+ E I R S + ++ +++ +S + A IL ++GC P
Sbjct: 248 RSKEAVELFEDMISKRGISPDPVIFNVMINGFCRS-GEVERAKMILDFMKKNGCNP---- 302
Query: 138 RLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+ SA + C+ Q + E+K G D L++ LC ++ EA K+L
Sbjct: 303 NVYNYSALMNGFCKEGKIQEAKQVFDEVKKTGLKLDTVGYTTLMNCLCRNGEIDEAMKLL 362
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M ++ C D +Y++++ +S+ ++ +A++M+ + G+ +G + AL
Sbjct: 363 GEMKASRCRADALTYNVILRGLSSEGRSEEALQMLDQWGCE-GVHLNKGSYRIILNALCC 421
Query: 255 NREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
N E+ KAV+ + + ++G P E+VV C E + + ++G G IP K
Sbjct: 422 NGELEKAVKFLSVMSKRGIWPHHATWNELVVRLC-ESGNTEIGVRVLIGFLGIGLIPAPK 480
Query: 314 VRQKVVEGL 322
VVE +
Sbjct: 481 SWGAVVESI 489
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 28/136 (20%), Positives = 63/136 (46%), Gaps = 3/136 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-SAECVPDLESYSIVIGAM 216
+L ++ P+ N LV C + A +V++ M S P+ +YS ++ +
Sbjct: 184 LLYAKHNLALQPNTCIFNILVKHHCKNGDIDSAFRVVEEMKRSGISYPNSITYSTLMDCL 243
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++ +AVE+ ++M+ G+ P + + + E+ +A +++F+++ GC
Sbjct: 244 FAQSRSKEAVELFEDMISKRGISPDPVIFNVMINGFCRSGEVERAKMILDFMKKNGCNPN 303
Query: 277 FQGYEVVVEGCLECRE 292
Y ++ G C+E
Sbjct: 304 VYNYSALMNGF--CKE 317
>gi|302794977|ref|XP_002979252.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
gi|300153020|gb|EFJ19660.1| hypothetical protein SELMODRAFT_110457 [Selaginella moellendorffii]
Length = 702
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/350 (22%), Positives = 131/350 (37%), Gaps = 70/350 (20%)
Query: 51 PELLGSFEEACQNPNP----FSFLSNFPQ-NHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105
PE+ G + ++P+ F + N P H +L +F+ + R + A+ L
Sbjct: 43 PEVAGRVLQQVEDPDVAWTFFQWAGNKPGFQHNAYTCAVLLNAFVKAK---RHEEAHRLL 99
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR-----------------LLLSSAWLER 148
+ L PL I+ T+ +G Q+ +LL S ++
Sbjct: 100 K----EELEPLCFPNEIMYTTVINGFCKAGQVDQAFELLDEMKERGVKMDVLLHSTLIQG 155
Query: 149 RCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGM-----SSAE 201
C+ + + L + KS+G P+ T N +V+ LC +++ EA ++ M +S
Sbjct: 156 LCRKGRIDEALEQFKSMGEECSPNVITYNTVVNGLCKANRIDEALELFDDMEKRYEASHG 215
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEM-------------VLNMGL---------- 238
C PD+ SYS VI A+ A++ + A E K M L GL
Sbjct: 216 CEPDVISYSTVIDALCKAQRVDKAYEYFKRMRAVGCAPNVVTYSSLIDGLCKVDRPSECL 275
Query: 239 -----MPRQGMVIKVA------AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
M +G I + AL N E KA + E L + G Y V V G
Sbjct: 276 ELLLHMKEKGFGINIIDFNAMLHALWKNDEQEKACQFFERLLKSGKKPNVVTYNVAVHGL 335
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ A + ++ M E P + +++G G A V R
Sbjct: 336 CKAGRVDEAYRILLEMVESKVTPDVITYSSIIDGFCKAGRMDKADDVFTR 385
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 79/165 (47%), Gaps = 4/165 (2%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ R + C+P P + L + E + +S+ + +M + G+ P T N L+ +
Sbjct: 382 VFTRMMVHECIPHPVTFMTLLHGFSEHK-KSREAFRVHEDMVNAGFIPGLQTYNVLMDCV 440
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C D + A ++ M + PD +Y+ +I + AR+ ++A E + M + ++P
Sbjct: 441 CGADSVESALEIYHKMKRKKRQPDCNTYAPLIQCLCRARRVDEAKEFLDVMEAD-NVVPN 499
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVE 285
+ + L E+ +A +++ + GC P+G + ++++VE
Sbjct: 500 GAICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLG-ETFKILVE 543
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 9/200 (4%)
Query: 141 LSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+ A +E C+ V + +L + +G P T LV L + A+K+L+
Sbjct: 502 ICHALVEVLCKQGEVDEACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLR-- 559
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
S V D +YS+ + + A K ++AVE++++MVL G+ P +G + V +L
Sbjct: 560 -SPGFVADAATYSLCVAEICKAGKPDEAVEVIEQMVLK-GVRPDEGTYVAVLRSLCGLDR 617
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A+ E + +GC G Y +++ A + M GF P + +
Sbjct: 618 VESAIAEFEKMASRGCAPGLVTYTLLIGEACSADMADEAFRIFEAMVAAGFTPQAQTMRT 677
Query: 318 VVEGLAGVGEWKLATVVRQR 337
+ L G L +VRQR
Sbjct: 678 LSSCLRDAGYQDL--LVRQR 695
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 75/166 (45%), Gaps = 32/166 (19%)
Query: 119 ALAILQRTLRSGCVPVPQ-IRLLLSSAWLERRCQSQS--------VAD------------ 157
A ++L + GC P+ + ++L+ +L ++ ++ S VAD
Sbjct: 519 ACSVLDNVVEVGCQPLGETFKILVEELYLRKKWEAASKLLRSPGFVADAATYSLCVAEIC 578
Query: 158 ----------ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ +M G PD GT ++ SLC +D++ A + M+S C P L
Sbjct: 579 KAGKPDEAVEVIEQMVLKGVRPDEGTYVAVLRSLCGLDRVESAIAEFEKMASRGCAPGLV 638
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
+Y+++IG +A ++A + + MV G P+ + +++ LR
Sbjct: 639 TYTLLIGEACSADMADEAFRIFEAMVA-AGFTPQAQTMRTLSSCLR 683
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 31/125 (24%), Positives = 58/125 (46%), Gaps = 8/125 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +R L+SG P ++ + + C++ V + ILLEM PD T +
Sbjct: 309 ACQFFERLLKSGKKP----NVVTYNVAVHGLCKAGRVDEAYRILLEMVESKVTPDVITYS 364
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C ++ +A V M EC+P ++ ++ S +K+ +A + ++MV N
Sbjct: 365 SIIDGFCKAGRMDKADDVFTRMMVHECIPHPVTFMTLLHGFSEHKKSREAFRVHEDMV-N 423
Query: 236 MGLMP 240
G +P
Sbjct: 424 AGFIP 428
>gi|242036829|ref|XP_002465809.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
gi|241919663|gb|EER92807.1| hypothetical protein SORBIDRAFT_01g046200 [Sorghum bicolor]
Length = 649
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD + N L+ C + ++ EA K K M PD+ S+S +IG ST K + A
Sbjct: 260 PDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDVVSFSCLIGLFSTRGKMDHAAAY 319
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
++EM +GL+P + V M +A+ + + + GC Y ++ G
Sbjct: 320 LREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGLGCLPDVVTYNTLLNGLC 378
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-----TVVRQRF 338
+ + A + + M ERG P + ++ G G ++ A T++ QR
Sbjct: 379 KQHRLLDAEELLNEMKERGVTPDLCTFTTLIHGYCRDGNFEKALQLFDTLLHQRL 433
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 53/229 (23%), Positives = 90/229 (39%), Gaps = 4/229 (1%)
Query: 84 EMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSS 143
E++ S + P +P++ +D L+ QS P A R L VPVP
Sbjct: 73 EIVSSLLASSPTPQPQV-FDLLIRTYTQSRKPREAFEAF--RLLLDHRVPVPASASNALL 129
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R + + S + T N +V S C + +A V+ M
Sbjct: 130 AALSRAGWPHLAEEAYRLVLSSDSEVNAYTLNIMVHSYCKSLEFDKADTVISEMEKRCVF 189
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ +++++I A A + A+ ++ M N GL P V L +R KA E
Sbjct: 190 PDVVTHNVLIDARFRAGDVDAAIALVDSMA-NKGLKPGIVTFNSVLKGLCKHRRFDKAKE 248
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ +++ + + +++ G E A K M +RG P +
Sbjct: 249 VFRAMDQCSVAPDVRSFNILIGGFCRVGEVEEAMKFYKEMQQRGVTPDV 297
>gi|293330959|ref|NP_001169662.1| uncharacterized protein LOC100383543 [Zea mays]
gi|224030695|gb|ACN34423.1| unknown [Zea mays]
gi|414870691|tpg|DAA49248.1| TPA: hypothetical protein ZEAMMB73_502001 [Zea mays]
Length = 756
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/294 (22%), Positives = 124/294 (42%), Gaps = 17/294 (5%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPF--SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKI 100
DA Y Q E+ FE N F N +H +KV+D ML+ P +
Sbjct: 283 DALGYIQ-KEIADGFEPDQVTYNTFVHCLCQNGHVSHALKVMDLMLQE------GHDPDV 335
Query: 101 -AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADI 158
Y+ +++ L L A I+ + + GC+P L+ + + R + D+
Sbjct: 336 FTYNTVIN-CLSKNGELDEAKGIVNQMVDRGCLPDTTTFNTLIVALCSQNRLEE--ALDL 392
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
E+ G PD T N L+++LC + ++ + M S+ C PD +Y+I+I + +
Sbjct: 393 ARELTVKGLSPDVYTFNILINALCKVGDPHLGIRLFEEMKSSGCAPDEVTYNILIDHLCS 452
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPIGF 277
K +A++++KEM N PR + + AL + +A E+ + ++ G
Sbjct: 453 MGKLVNALDLLKEMESNG--CPRSTVTYNTIIDALCKQMRIEEAEEVFDQMDAHGISRSA 510
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +++G + + A + + M + G P ++ G+ K A
Sbjct: 511 VTFNTLIDGLCKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKA 564
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 40/181 (22%), Positives = 81/181 (44%), Gaps = 5/181 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+++ + D ++ +M G P T N +++ C L +AA +L+ M++ D+
Sbjct: 521 CKAKRIDDATELIEQMVKEGLQPSNITYNSILTHYCKQGDLKKAADILETMTANGFEIDV 580
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y +I + A +T A+++++ M + G+ P V +L + A+ +
Sbjct: 581 VTYGTLINGLCKAGRTQVALKLLRGMRIK-GIRPTPKAYNPVIQSLFRRNNLRDALSLFR 639
Query: 267 FLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ G P Y++V G C A ++ M +GF+P + + EGL +
Sbjct: 640 EMTEVGEPPDALTYKIVFRGLCRGGGPIKEAFDFLVEMVNKGFMPEFSSFRMLAEGLLNL 699
Query: 326 G 326
G
Sbjct: 700 G 700
>gi|295831107|gb|ADG39222.1| AT5G43820-like protein [Capsella grandiflora]
Length = 169
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIKHKGSVPDANVYNAMICNFISARDFDESVMYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G +P G+V L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCKISESAYKLLLK 148
>gi|255660968|gb|ACU25653.1| pentatricopeptide repeat-containing protein [Verbena hispida]
Length = 376
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 7/158 (4%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
G M +I + N+ +A +++ L KG G Y +++EG +
Sbjct: 191 GTMHCSPTIITYNTLINGFCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMEGLCFDHKV 250
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 251 ERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMELA 288
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 48/231 (20%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + + I L A L+R +L M G
Sbjct: 108 GYIDKSLHVLEMAEQ--KGGVLGAFAYSAMINGLCKEANLDR------AVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +V + M + C P + +Y+ +I + +A
Sbjct: 160 CKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGFCKNKMFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ +A+++ + KG Q + +++ G
Sbjct: 220 NLVKEL-LDKGLDPGVITYSMLMEGLCFDHKVERALQLWNQVTSKGFKPDVQMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+ + A V+ R
Sbjct: 279 LCSVGKMELALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|225435096|ref|XP_002281474.1| PREDICTED: pentatricopeptide repeat-containing protein At1g07740,
mitochondrial-like [Vitis vinifera]
Length = 501
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 6/202 (2%)
Query: 85 MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSS 143
+LE I + R RP LL L SL A ++ GC P + +L+S
Sbjct: 284 LLEDMI--QKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSD 341
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L RR + +LLEMK + PD T N L++ LC + +EA KVL M C
Sbjct: 342 --LGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCE 399
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
P+ +Y +++ ++++ M++ G PR + L N ++ A
Sbjct: 400 PNAATYRMMVDGFCQVEDFEGGLKVLSAMLM-CGHCPRLESFCDLVVGLLKNGKIDGACF 458
Query: 264 MIEFLERKGCPIGFQGYEVVVE 285
++E +E++ + +E +V+
Sbjct: 459 VLEEMEKRKMRFHLEAWEALVK 480
>gi|302765176|ref|XP_002966009.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
gi|300166823|gb|EFJ33429.1| hypothetical protein SELMODRAFT_84672 [Selaginella moellendorffii]
Length = 413
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM G D CN L+ C + L +A ++L M++ V D+ +YS ++ A+
Sbjct: 69 VFQEMLGAGLQADVNVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALG 128
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + A+E+ M G MP + + + L ++ +A+E++E + RKG
Sbjct: 129 KAGRAAKALEVFSNMQ-KAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMNRKGIMPDC 187
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ Y +V++ C Y A M R P + ++ GL
Sbjct: 188 RTYNIVIDVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGL 232
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 57/117 (48%), Gaps = 1/117 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + ++GC+P + +L S L ++ + ++L +M G PDC T N ++
Sbjct: 136 ALEVFSNMQKAGCMPDTVVYNVLISC-LGKQGKVDEALELLEDMNRKGIMPDCRTYNIVI 194
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L + + +A M + PD+ +Y+ ++ + R+T++A ++ EM N
Sbjct: 195 DVLSSCGRYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQAN 251
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 39/180 (21%), Positives = 81/180 (45%), Gaps = 2/180 (1%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK + PD T N L++ L + + EA + M + +C+PDL ++ +I ++ A +
Sbjct: 213 MKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFGTLIDTLAKAGR 272
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
DA+E +V MG +P + + + + ++ K E+ + + C Y
Sbjct: 273 MEDALEQSARLV-KMGHVPNSYIYNALISGFCRSGQVDKGYELFQDMIECSCFPDSITYT 331
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-TVVRQRFAE 340
++V G +A + + M G P + ++ L+ G+ + A T+ ++ A+
Sbjct: 332 ILVLGFSRRGHTSMAMELLQEMVREGHTPALATYNVLIRSLSMAGQVEDAYTLFKEMIAK 391
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 54/255 (21%), Positives = 105/255 (41%), Gaps = 12/255 (4%)
Query: 83 DEMLESFIPLRPRSRPK---IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
D L+ F L+ K +++D L+ + L + ALA+ Q L +G Q +
Sbjct: 28 DRALDMFRRLKQEGSCKPNAVSFDTLVIF-LCKMSRATDALAVFQEMLGAGL----QADV 82
Query: 140 LLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ + + C+ + +L M + + D T +YL+ +L + +A +V
Sbjct: 83 NVCNTLIHCTCRLGMLRQARRLLHHMTAHAFVLDVFTYSYLMDALGKAGRAAKALEVFSN 142
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M A C+PD Y+++I + K ++A+E++++M G+MP V L +
Sbjct: 143 MQKAGCMPDTVVYNVLISCLGKQGKVDEALELLEDMN-RKGIMPDCRTYNIVIDVLSSCG 201
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
KA ++R+ Y ++ G + R A M +P +
Sbjct: 202 RYEKAYSFFGMMKRRKHSPDVVTYNTLLNGLKKLRRTDEACDLFDEMQANKCMPDLTTFG 261
Query: 317 KVVEGLAGVGEWKLA 331
+++ LA G + A
Sbjct: 262 TLIDTLAKAGRMEDA 276
>gi|224125710|ref|XP_002319656.1| predicted protein [Populus trichocarpa]
gi|222858032|gb|EEE95579.1| predicted protein [Populus trichocarpa]
Length = 487
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/314 (20%), Positives = 140/314 (44%), Gaps = 21/314 (6%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRP 94
++ ++++ + ++G E+ + P+ F++ +S F + +RI+ +L+ R
Sbjct: 17 IKGFFNSRNIDKATRVMGILEKHGK-PDVFAYNAVISGFCKANRIESAKTVLDRM--KRK 73
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR-SGCVPVPQIRLLLSSAWLERRCQSQ 153
P + ++ T + LAL + + L+ + C P +L A++ +
Sbjct: 74 GFSPDVVTHNIMIGTFCGKGKIDLALKVFEELLKDNNCKPTLITYTILIEAYILEGGIDE 133
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
++ +L EM S G PD T N + LC ++ A + ++ ++S C PD+ +Y+I++
Sbjct: 134 ALK-LLDEMLSRGLEPDTFTYNVITRGLCKEGKVDRAFEFVRTLNSRGCKPDVITYNILL 192
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ K ++ + M E + + G P + ++L + ++ ++V +++ ++ KG
Sbjct: 193 RALLNQGKWDEGEKWMSE-IFSRGCEPNVVTYSILISSLCRDGKIEESVNLVKVMKEKGL 251
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGLAGVGE 327
Y+ ++ CRE GK M M GF+P I ++ L G
Sbjct: 252 TPDAYCYDPLIAAF--CRE----GKLDMAIEFLDCMICDGFLPDIVNYNTIMAALCKNGN 305
Query: 328 WKLATVVRQRFAEL 341
A + + E+
Sbjct: 306 GDHAVEIFGKLDEV 319
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 90/220 (40%), Gaps = 8/220 (3%)
Query: 125 RTLRS-GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
RTL S GC P +L A L + + + E+ S G P+ T + L+SSLC
Sbjct: 174 RTLNSRGCKPDVITYNILLRALLNQGKWDEG-EKWMSEIFSRGCEPNVVTYSILISSLCR 232
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
++ E+ ++K M PD Y +I A K + A+E + M+ + G +P
Sbjct: 233 DGKIEESVNLVKVMKEKGLTPDAYCYDPLIAAFCREGKLDMAIEFLDCMICD-GFLPDIV 291
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ AAL N AVE+ L+ GCP Y ++ + A + M
Sbjct: 292 NYNTIMAALCKNGNGDHAVEIFGKLDEVGCPPNVSSYNTMLSALWSSGDRYRALGMISQM 351
Query: 304 TERGFIPYIKVRQKVV-----EGLAGVGEWKLATVVRQRF 338
+G P + ++ +G+ LA ++ RF
Sbjct: 352 LSKGIDPDVITYNSLISCLCRDGMVDEAIGLLADMLSGRF 391
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ I + GC P V +LS+ W ++ +M S G PD T N L
Sbjct: 309 AVEIFGKLDEVGCPPNVSSYNTMLSALW--SSGDRYRALGMISQMLSKGIDPDVITYNSL 366
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+S LC + EA +L M S P++ SY V+ + A + +DA+E++ M+ N G
Sbjct: 367 ISCLCRDGMVDEAIGLLADMLSGRFQPNIVSYKTVLLGLCKAHRIDDAIEVLAAMIEN-G 425
Query: 238 LMPRQ 242
P +
Sbjct: 426 CQPNE 430
>gi|297807691|ref|XP_002871729.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317566|gb|EFH47988.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 504
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/219 (21%), Positives = 102/219 (46%), Gaps = 14/219 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL + R + G P +++ + ++ C+S+ V D+L M+ G PD T N
Sbjct: 170 ALYMFDRMVEMGYEP----NVVIYNTIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYN 225
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV-- 233
L+S LC + +A +++ M+ E PD+ +++ +I A + ++A E+ +EM+
Sbjct: 226 SLISGLCNSGRWDDATRMVSCMTKREIYPDVFTFNALIDACVKEGRISEAEELYEEMIRR 285
Query: 234 -LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L+ ++ ++ + R + +A +M F+ KGC Y +++ G + ++
Sbjct: 286 SLDPDIVTYSLLIYGLCMYSRLD----EAEQMFGFMVSKGCFPDVVTYSILINGYCKSKK 341
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
K M++RG + +++G G+ +A
Sbjct: 342 VEHGMKLFCEMSQRGVVRNTVTYTVLIQGYCRAGKLNVA 380
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 82/194 (42%), Gaps = 8/194 (4%)
Query: 131 CVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
C P+P I RLL + + +++ V + +M+ +G + TCN L++ C Q
Sbjct: 75 CRPLPSIADFSRLLSAISKMKKY---DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A L M PD+ ++ ++ + DA+ M MV MG P +
Sbjct: 132 LSLALSFLGKMMKLGHEPDIVTFGSLLNGFCRGDRIYDALYMFDRMV-EMGYEPNVVIYN 190
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L ++++ A++++ +E G Y ++ G + A + V MT+R
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEVDGIRPDAVTYNSLISGLCNSGRWDDATRMVSCMTKR 250
Query: 307 GFIPYIKVRQKVVE 320
P + +++
Sbjct: 251 EIYPDVFTFNALID 264
>gi|345293605|gb|AEN83294.1| AT5G43820-like protein, partial [Capsella rubella]
gi|345293607|gb|AEN83295.1| AT5G43820-like protein, partial [Capsella rubella]
gi|345293609|gb|AEN83296.1| AT5G43820-like protein, partial [Capsella rubella]
gi|345293611|gb|AEN83297.1| AT5G43820-like protein, partial [Capsella rubella]
gi|345293613|gb|AEN83298.1| AT5G43820-like protein, partial [Capsella rubella]
gi|345293615|gb|AEN83299.1| AT5G43820-like protein, partial [Capsella rubella]
Length = 170
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIKHKGSVPDANVYNAMICNFISARDFDESVMYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G +P G+V L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCKISESAYKLLLK 148
>gi|125539409|gb|EAY85804.1| hypothetical protein OsI_07165 [Oryza sativa Indica Group]
Length = 649
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +++ EM G P+ T + L+SSLC + + A +VL+ M C PD +Y+I+
Sbjct: 309 EDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNII 368
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERK 271
I ++S + +DA+ ++ MV + G + RA R W A E+I + R
Sbjct: 369 INSLSERGRVDDALRLLNSMVCKPDAL---GFNAVLKGFCRAER--WHDASELIAQMFRD 423
Query: 272 GCPIGFQGYEVVVE 285
CP+ + ++++
Sbjct: 424 DCPLIEMTFNILID 437
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M + G PD T N L++ +L +A K+L M C PD SY+ + +
Sbjct: 552 EVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLLSTM---SCKPDAISYNSTLKGL 608
Query: 217 STARKTNDAVEMMKEMVLN 235
A + DA E++ EM+ N
Sbjct: 609 CRAERWQDAEELVAEMLRN 627
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +++ EM P+ T N L++SLC + A +VL+ M + PD+
Sbjct: 508 RAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 567
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ +I S + +DA++++ M
Sbjct: 568 TYNALINGFSEQGRLDDALKLLSTM 592
Score = 37.7 bits (86), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 60/291 (20%), Positives = 116/291 (39%), Gaps = 23/291 (7%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI 100
A+ ++ I EL+ +PN +F +S+ QN+ + E+LE + P
Sbjct: 305 AERWEDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQM--EKYGCEPDT 362
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
++ +L + AL +L + C P L +A L+ C+++ D
Sbjct: 363 VNYNIIINSLSERGRVDDALRLLNSMV---CKP----DALGFNAVLKGFCRAERWHDAS- 414
Query: 161 EMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
E+ + + DC T N L+ +LC + A +V + M C PD+ +YS ++
Sbjct: 415 ELIAQMFRDDCPLIEMTFNILIDTLCQNGLVNYATQVFEQMPRYRCTPDIVTYSSLLNGF 474
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLERKGCPI 275
S A+++ + M + ++ + A R W+ A E+I + K CP
Sbjct: 475 SEQGLVEVAIQLFRSMPCKPDIFSYNAVLKGLCRAAR-----WEDAGELIAEMVGKDCPP 529
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ +++ + A + + M G P I ++ G + G
Sbjct: 530 NEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIFTYNALINGFSEQG 580
>gi|302780004|ref|XP_002971777.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
gi|300160909|gb|EFJ27526.1| hypothetical protein SELMODRAFT_96029 [Selaginella moellendorffii]
Length = 556
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 64/295 (21%), Positives = 125/295 (42%), Gaps = 32/295 (10%)
Query: 48 QQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYD 103
Q +L + E + NP+ F++ +S ++ ++ E+LE I +S P I Y+
Sbjct: 114 DQAVKLFENMESSRVNPDIFTYNTVISGLCKSGNLEKARELLEEMIRRGGKSAPDIVTYN 173
Query: 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK 163
L++ + + AL IL +G P P + + ++ + C + V + +K
Sbjct: 174 TLINAGICKDGDVEEALEILDGMKLAG--PAPDV--ITYNSIIHALCVAGRVVEAAEILK 229
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
++ PD T N L+ C L A +VL+ M +PD+ +Y+I++ + +
Sbjct: 230 TMSCSPDLVTFNTLLDGFCKAGMLPRALEVLEEMCRENILPDVITYTILVNGLCRVGQVQ 289
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAA----------------ALRANREMWKAVEMIEF 267
A +++E+V RQG + V A A + +EM + E
Sbjct: 290 VAFYLLEEIV-------RQGYIPDVIAYTSLVDGLCKSGEIEEAHKLVKEMSAREILAEM 342
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ P F Y +V+ G ++ A + + RG++P + +++GL
Sbjct: 343 VSINMVPPLFT-YNIVLGGLIKDGSISKAVSLISDLVARGYVPDVVTYNTLIDGL 396
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 60/140 (42%), Gaps = 8/140 (5%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVAD 157
+Y++LL ++S H + + L SGC P L+ + C Q+ +
Sbjct: 29 SYNHLLDILVKSGHQFRTG-KVYKDLLHSGCSP----NLVTFKILIRGNCKAGQATRALE 83
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L + PD N+L+ L +A K+ + M S+ PD+ +Y+ VI +
Sbjct: 84 FLRALDEFSVAPDVYIFNFLIHGLFKDGNPDQAVKLFENMESSRVNPDIFTYNTVISGLC 143
Query: 218 TARKTNDAVEMMKEMVLNMG 237
+ A E+++EM+ G
Sbjct: 144 KSGNLEKARELLEEMIRRGG 163
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY PD T N L+ LC +++ EA + M+S C P+ + V+ + + +DA
Sbjct: 381 GYVPDVVTYNTLIDGLCKANRVREACDLADEMASLGCFPNDVTLGSVVFGLCRVGRVDDA 440
Query: 226 VEMMKEM 232
++ EM
Sbjct: 441 WSLVVEM 447
>gi|297797613|ref|XP_002866691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312526|gb|EFH42950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 638
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L +M+ G+ P+ L+ +LC +D++ EA KV M EC D+ +Y+ ++
Sbjct: 309 DLLKDMRRRGFEPNATCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 368
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + ++ +M+ GLMP Q + + AA ++ + +E++E +++
Sbjct: 369 CKWGKIDKCYLVLDDMI-KKGLMPSQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPD 427
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VV+ + E A + M G P ++ GL G
Sbjct: 428 IGIYNVVIRLACKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQG 477
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/112 (24%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L ++ G +P Q+ + A E++ + +++ +MK I YHPD G N ++
Sbjct: 380 VLDDMIKKGLMP-SQLTYMHIMAAHEKKEKLIECLELMEKMKQIEYHPDIGIYNVVIRLA 438
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
C + ++ EA ++ M P +++ I+I +++ +A + KEMV
Sbjct: 439 CKLGEVKEAVRLWNEMEGNGLSPGADTFVIIINGLTSQGCLLEACDHFKEMV 490
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 146 LERRCQSQSVADI--LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L+ C+ SV D L E + + + L+ C ++++EA VL M A
Sbjct: 226 LDALCKHGSVKDAAKLFEDMRLRFPVNLRYFTSLLYGWCREEKMMEAKYVLVQMKEAGFE 285
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ Y+ ++ + A K DA +++K+M G P + AL M +A++
Sbjct: 286 PDIVDYTNLLSGYANAGKMADAYDLLKDM-RRRGFEPNATCYTVLIQALCKVDRMEEAMK 344
Query: 264 MIEFLERKGCPIGFQGYEVVVEG 286
+ +ER C Y +V G
Sbjct: 345 VFVEMERYECEADVVTYTALVSG 367
>gi|242073234|ref|XP_002446553.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
gi|241937736|gb|EES10881.1| hypothetical protein SORBIDRAFT_06g018030 [Sorghum bicolor]
Length = 381
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/170 (22%), Positives = 74/170 (43%), Gaps = 1/170 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M++ G P+ T N ++ ++C + +A ++L + S C P+ +Y+ V+ + + +
Sbjct: 7 MRAEGCEPNVVTYNVIIDAMCREGDVDQARELLNSLPSRGCKPNTVNYNTVLKGLCSIER 66
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
DA E++ EMV P + V + L + K +E + + GC Y
Sbjct: 67 WVDAEELLDEMVRE-NCPPNEATVNVIVNTLSRKGLLQKVTRYLEKMSKHGCTANVVTYN 125
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
V+ G E A + + M G P I +++GL +W+ A
Sbjct: 126 AVISGMCEQGHVDSALELLSNMQSFGCKPDIVTYNTLLKGLCSADQWEDA 175
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVA 156
+ Y+ ++S + H + AL +L GC P ++ + L+ C Q +
Sbjct: 122 VTYNAVISGMCEQGH-VDSALELLSNMQSFGCKP----DIVTYNTLLKGLCSADQWEDAE 176
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++++M PD T N ++S LC +++A +V K M C P+ +YS +IG +
Sbjct: 177 ELMIKMSQNDCLPDNVTFNTIISFLCQKGLILQAFEVFKQMPEKGCNPNSTTYSTIIGGL 236
Query: 217 STARKTNDAVEMMKEM 232
+ A K A+E++ EM
Sbjct: 237 AKAGKMEQALELLNEM 252
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 92/204 (45%), Gaps = 6/204 (2%)
Query: 84 EMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLS 142
E+L S +P R + Y+ +L L S+ A +L +R C P + ++++
Sbjct: 37 ELLNS-LPSRGCKPNTVNYNTVLK-GLCSIERWVDAEELLDEMVRENCPPNEATVNVIVN 94
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ L R+ Q V L +M G + T N ++S +C + A ++L M S C
Sbjct: 95 T--LSRKGLLQKVTRYLEKMSKHGCTANVVTYNAVISGMCEQGHVDSALELLSNMQSFGC 152
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD+ +Y+ ++ + +A + DA E+M +M N +P + + L + +A
Sbjct: 153 KPDIVTYNTLLKGLCSADQWEDAEELMIKMSQN-DCLPDNVTFNTIISFLCQKGLILQAF 211
Query: 263 EMIEFLERKGCPIGFQGYEVVVEG 286
E+ + + KGC Y ++ G
Sbjct: 212 EVFKQMPEKGCNPNSTTYSTIIGG 235
>gi|115446101|ref|NP_001046830.1| Os02g0470000 [Oryza sativa Japonica Group]
gi|47497415|dbj|BAD19472.1| putative PPR protein [Oryza sativa Japonica Group]
gi|47497530|dbj|BAD19582.1| putative PPR protein [Oryza sativa Japonica Group]
gi|113536361|dbj|BAF08744.1| Os02g0470000 [Oryza sativa Japonica Group]
Length = 649
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +++ EM G P+ T + L+SSLC + + A +VL+ M C PD +Y+I+
Sbjct: 309 EDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNII 368
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERK 271
I ++S + +DA+ ++ MV + G + RA R W A E+I + R
Sbjct: 369 INSLSERGRVDDALRLLNSMVCKPDAL---GFNAVLKGFCRAER--WHDASELIAQMFRD 423
Query: 272 GCPIGFQGYEVVVE 285
CP+ + ++++
Sbjct: 424 DCPLIEMTFNILID 437
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M + G PD T N L++ +L +A K+L S+ C PD SY+ + +
Sbjct: 552 EVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLL---STMSCKPDAISYNSTLKGL 608
Query: 217 STARKTNDAVEMMKEMVLN 235
A + DA E++ EM+ N
Sbjct: 609 CRAERWQDAEELVAEMLRN 627
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +++ EM P+ T N L++SLC + A +VL+ M + PD+
Sbjct: 508 RAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 567
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ +I S + +DA++++ M
Sbjct: 568 TYNALINGFSEQGRLDDALKLLSTM 592
>gi|357143144|ref|XP_003572818.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Brachypodium distachyon]
Length = 496
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 81/176 (46%), Gaps = 7/176 (3%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T N L+ +C + +A V M + +P++ +Y+++I +
Sbjct: 304 EMSKEGCPPTIATYNALIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVG 363
Query: 221 KTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQ 278
K + A+++M+ M N G P Q + + + EM KA+ + E + + + C
Sbjct: 364 KIDRAMKLMERMK-NEGCEPVVQTYNVLIRYSFEEG-EMDKALHLFERMSKGEECLPNQD 421
Query: 279 GYEVVVEGCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +V+ + +A + VM M ERG++P + +V+ GL G +L+
Sbjct: 422 TYNIVISAMFVRKRAEDMAIAARMVMEMVERGYLPRRFMLNRVLNGLMLTGNQQLS 477
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/175 (18%), Positives = 69/175 (39%), Gaps = 4/175 (2%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA- 225
+ PD T N L C + A +L+ M+ + P +Y++++ A + A
Sbjct: 200 FPPDVVTYNTLADGWCRVKDTSRALDLLRQMAESGIAPTKTTYNVILKGFFRAGQLQHAW 259
Query: 226 ---VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++M K + P + L ++ KA ++ + + ++GCP Y
Sbjct: 260 NFFLQMKKRGSKDENCKPDVVSYTTIIHGLGVAGQLDKARKLFDEMSKEGCPPTIATYNA 319
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+++ + A M + +IP + ++ GL VG+ A + +R
Sbjct: 320 LIQVICKKGNVEDAVTVFDDMIRKDYIPNVVTYTVLIRGLCHVGKIDRAMKLMER 374
>gi|449469499|ref|XP_004152457.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
gi|449487784|ref|XP_004157799.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Cucumis sativus]
Length = 502
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 7/178 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM G P T N ++ LC D + A + + M VP+L +Y++VI +
Sbjct: 309 VFNEMVGEGILPSTATYNAMIQVLCKKDSVENAVLMFEEMVKKGYVPNLTTYNVVIRGLF 368
Query: 218 TARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + A+E ++ M + G P Q + + A ++ K + M E + + P
Sbjct: 369 HAGNMDKAMEFIERMKTD-GCEPNVQTYNVAIRYFCDAG-DVEKGLSMFEKMGQGSLP-N 425
Query: 277 FQGYEVVVEGCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V++ + + ++AGK ++ M +RGFIP +V+ GL G A
Sbjct: 426 LDTYNVLISAMFVRKKSEDLVVAGKLLLEMVDRGFIPRKFTFNRVLNGLLLTGNQAFA 483
>gi|222613072|gb|EEE51204.1| hypothetical protein OsJ_32019 [Oryza sativa Japonica Group]
Length = 615
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 7/189 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC-QSQSVAD 157
+ Y L++Y ++ A I + G P + R LL E R +S+ + D
Sbjct: 280 VTYSSLMNYLCKNGRSTE-ARKIFDSMTKRGLEPDIATYRTLLQGHCKEGRVIESEKLFD 338
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+++ IG PD T N L+ C ++ EA K+L M S PD+ +Y +I
Sbjct: 339 LMVR---IGVKPDIITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYC 395
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +DA+ + KEMV + G+ P + L R A E+ + + G +
Sbjct: 396 RVSRMDDALALFKEMV-SSGVSPNIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLEL 454
Query: 278 QGYEVVVEG 286
Y +++ G
Sbjct: 455 STYNIILHG 463
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G PDC T N ++ C+ Q EA LK M S P++ +YS ++ +
Sbjct: 230 EVLNTMVKNGVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYL 289
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++ +A ++ M GL P + + ++ ++ + + R G
Sbjct: 290 CKNGRSTEARKIFDSMT-KRGLEPDIATYRTLLQGHCKEGRVIESEKLFDLMVRIGVKPD 348
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++GC + A K + M G P I ++ G
Sbjct: 349 IITYNTLIDGCCLAGKMDEATKLLASMVSVGVKPDIVTYGTLING 393
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 50/218 (22%), Positives = 91/218 (41%), Gaps = 14/218 (6%)
Query: 116 LPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L L A L ++ G V LL ++R S ++ +L M +G PD +
Sbjct: 108 LDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKR-TSDAMDIVLRRMTELGCIPDVFSY 166
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSS---AECVPDLESYSIVIGAMS--------TARKTN 223
N L+ LC ++ EA ++L M+ PD+ SY+ V+ TA+ +
Sbjct: 167 NNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGIQTKLTAQAMD 226
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
A+E++ MV N G+MP + ++ + +A+ ++ + G Y +
Sbjct: 227 KAMEVLNTMVKN-GVMPDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSL 285
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ + A K MT+RG P I + +++G
Sbjct: 286 MNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQG 323
>gi|125582060|gb|EAZ22991.1| hypothetical protein OsJ_06687 [Oryza sativa Japonica Group]
Length = 466
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +++ EM G P+ T + L+SSLC + + A +VL+ M C PD +Y+I+
Sbjct: 126 EDIGELMAEMVRKGCSPNEATFSMLISSLCQNNLVDSAVEVLEQMEKYGCEPDTVNYNII 185
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERK 271
I ++S + +DA+ ++ MV + G + RA R W A E+I + R
Sbjct: 186 INSLSERGRVDDALRLLNSMVCKPDAL---GFNAVLKGFCRAER--WHDASELIAQMFRD 240
Query: 272 GCPIGFQGYEVVVE 285
CP+ + ++++
Sbjct: 241 DCPLIEMTFNILID 254
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 42/79 (53%), Gaps = 3/79 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M + G PD T N L++ +L +A K+L S+ C PD SY+ + +
Sbjct: 369 EVLEQMPNYGSTPDIFTYNALINGFSEQGRLDDALKLL---STMSCKPDAISYNSTLKGL 425
Query: 217 STARKTNDAVEMMKEMVLN 235
A + DA E++ EM+ N
Sbjct: 426 CRAERWQDAEELVAEMLRN 444
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +++ EM P+ T N L++SLC + A +VL+ M + PD+
Sbjct: 325 RAARWEDAGELIAEMVGKDCPPNEVTFNILINSLCQKGLVDRAIEVLEQMPNYGSTPDIF 384
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ +I S + +DA++++ M
Sbjct: 385 TYNALINGFSEQGRLDDALKLLSTM 409
>gi|357477483|ref|XP_003609027.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355510082|gb|AES91224.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 583
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 81/185 (43%), Gaps = 1/185 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ D+ +M +G P+ T N L++ C + EA KV +S E VP++ +++ +
Sbjct: 325 EEAIDLWDKMVGLGLKPNIVTYNALINGFCKKKMMKEATKVFDDVSKQELVPNVITFNTM 384
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A + + M L+ G++P + A L +++ A E++ +E KG
Sbjct: 385 IDAYCKEGMMEEGFSLCSSM-LDEGILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKG 443
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++++G + + A K + M G P +++G G+ K A
Sbjct: 444 LKGDVVTYNILIDGLCKNDKSRNAEKLLNEMFNLGLKPNHVTYNTLMDGYCMEGKLKAAL 503
Query: 333 VVRQR 337
VR R
Sbjct: 504 NVRTR 508
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 74/169 (43%), Gaps = 25/169 (14%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L++ LC L A ++L M + D+ +Y+I+I + K+ +A
Sbjct: 408 GILPNVSTYNCLIAGLCRKQDLQAAKELLNEMENKGLKGDVVTYNILIDGLCKNDKSRNA 467
Query: 226 VEMMKEMVLNMGLMPRQ----------GMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+++ EM N+GL P M K+ AAL M K ERK +
Sbjct: 468 EKLLNEM-FNLGLKPNHVTYNTLMDGYCMEGKLKAALNVRTRMEK--------ERKQPNV 518
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP----YIKVRQKVVE 320
Y V+++G + + A + M E+G P Y VR +++E
Sbjct: 519 --VTYNVLIKGYCKINKLEAANGLLNEMLEKGLNPNRTTYDIVRLEMLE 565
>gi|115471383|ref|NP_001059290.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|33146978|dbj|BAC80051.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|50508482|dbj|BAD30659.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113610826|dbj|BAF21204.1| Os07g0249100 [Oryza sativa Japonica Group]
gi|215767773|dbj|BAH00002.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 882
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V +IL EMK P T +V L ID+L EA + + S
Sbjct: 602 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 661
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +++EM + GL P + AL E+
Sbjct: 662 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM-MKKGLTPNVYTWNSLLDALVKAEEIN 720
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ CP Y +++ G ++Y A M ++G +P + ++
Sbjct: 721 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 780
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA VG A + +RF
Sbjct: 781 SGLAKVGNITDAYSLFERF 799
Score = 45.1 bits (105), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 690 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 749
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K N A ++M GL+P + + L + A + E + G
Sbjct: 750 RVQKYNKAFVFWQDMQ-KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 808
Query: 278 QGYEVVVEG 286
+ ++EG
Sbjct: 809 ASFNALIEG 817
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 36/173 (20%), Positives = 73/173 (42%), Gaps = 3/173 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM+ P+ T N +V LC +L EA K+ + S C PD +Y +I +
Sbjct: 410 ILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 469
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A + ++M L+ G + + + ++ + L R+GC
Sbjct: 470 KKGQVDEAYRLFEKM-LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDL 528
Query: 278 QGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGEWK 329
++ + E + G+ + + GF+P ++ ++ GL G+ +
Sbjct: 529 TLLNTYMDCVFKAGE-VEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQAR 580
Score = 41.2 bits (95), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 71/163 (43%), Gaps = 8/163 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A IL+ ++ G P + ++ L+ +++ + + L+ MK + P+ T +
Sbjct: 687 AYLILEEMMKKGLTP----NVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYS 742
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + + +A + M VP++ +Y+ +I ++ DA + + N
Sbjct: 743 ILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKAN 802
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
G+ + ANR M +A ++ E +GC I +
Sbjct: 803 GGIPDAASFNALIEGMSNANRAM-EAYQVFEETRLRGCRINIK 844
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L+R GC+P V +L+ +R+ A L E+ P+ T N +
Sbjct: 338 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE---ALSLFEVMKKDAEPNSSTYNII 394
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ LC ++ EA ++L M A P+L + +I++ + ARK +A ++ +
Sbjct: 395 IDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFE 447
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 42/75 (56%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM +GY C +L ++L +L +A + M + P +Y+++IGA++
Sbjct: 131 VLEEMAVLGYGLPNQACAHLAAALVRARRLDDAVLAVAVMRRLKFRPAFSAYTVLIGALA 190
Query: 218 TARKTNDAVEMMKEM 232
AR+ A+E++++M
Sbjct: 191 EARRPERALELLRQM 205
>gi|255548724|ref|XP_002515418.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545362|gb|EEF46867.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1113
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 63/114 (55%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A +RR +++V +L EM+S+G P+ T +
Sbjct: 213 ALEMYRRMVLEGLKPSLKTFSALMVATGKRR-DTETVKSLLEEMESLGLKPNIYTYTICI 271
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L ++ EA +++K M C PD+ +Y+++I A+ TA K +DA+E+ +M
Sbjct: 272 RVLGRAGRIDEACRIMKRMEDDGCGPDVVTYTVLIDALCTAGKLDDAMELFVKM 325
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 117/288 (40%), Gaps = 7/288 (2%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR 97
V A A + + LL + PN ++ + R+ +D+ L+ F +
Sbjct: 376 VNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLISGLLRVNRLDDALDLFNNMETLGV 435
Query: 98 PKIAYDYLLSYTLQSLHPL-PLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQS 154
AY Y+L AL ++ G P V L S A + R +++
Sbjct: 436 VPTAYTYILFIDFYGKSGRSDKALETFEKMKIRGIAPNIVACNASLYSLAEMGRLREAKV 495
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ + +KS G PD T N ++ Q+ EA ++L MS +C PD+ + +I
Sbjct: 496 IFN---RLKSNGLAPDSVTYNMMMKCYSKAGQVDEAIELLSDMSENQCEPDIIVINSLIN 552
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A + ++A +M + +M L P + A L ++ +A+E+ + GCP
Sbjct: 553 TLYKAGRVDEAWKMFCRLK-DMKLAPTVVTYNTLIAGLGKEGQVQRAMELFASMTGNGCP 611
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ +++ + E LA K + MT +P + ++ GL
Sbjct: 612 PNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCMPDVLTFNTIIHGL 659
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V + EM++ GY PD T LV++LC + EA +L M +P+L +Y+ +I
Sbjct: 353 VKEFWSEMEADGYAPDVITFTILVNALCKAGNIDEAFHLLDVMRKQGVLPNLHTYNTLIS 412
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +DA+++ M +G++P I + KA+E E ++ +G
Sbjct: 413 GLLRVNRLDDALDLFNNME-TLGVVPTAYTYILFIDFYGKSGRSDKALETFEKMKIRG 469
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 35/146 (23%), Positives = 70/146 (47%), Gaps = 3/146 (2%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L + Q Q ++ M G P+ T N ++ LC D++ A K+L M++ C+
Sbjct: 587 AGLGKEGQVQRAMELFASMTGNGCPPNTITFNTILDCLCKNDEVDLALKMLYKMTTMNCM 646
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ +++ +I + ++ +DA+ + +M L P + + + N M A +
Sbjct: 647 PDVLTFNTIIHGLVIEKRVSDAIWLFHQM--KKMLTPDCVTLCTLLPGVVKNGLMEDAFK 704
Query: 264 MIE-FLERKGCPIGFQGYEVVVEGCL 288
+ E F+ R G + + +E ++ G L
Sbjct: 705 IAEDFVHRLGVYVDRRFWEDLMGGIL 730
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/109 (23%), Positives = 53/109 (48%), Gaps = 5/109 (4%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R + G V +P I++L ++ +QSV + K +G P + N+L+ +
Sbjct: 749 RVCKDGSVLMPIIKVLCKH---KQALVAQSV--FIRFTKELGVKPTLESYNFLIEGFLGV 803
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
A + M +A C PD+ +Y++++ A + K N+ E+ ++M+
Sbjct: 804 HNDEMAWNLFTEMKNAGCAPDVFTYNLLLDAHGKSGKINELFELYEQMI 852
>gi|224130828|ref|XP_002328386.1| predicted protein [Populus trichocarpa]
gi|222838101|gb|EEE76466.1| predicted protein [Populus trichocarpa]
Length = 617
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ L EM G PD T N ++ C++ QL EA ++ K M +PD +++I++ +
Sbjct: 257 EFLSEMVDRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGL 316
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++A + E + G P + + +M +A++++ + KGC
Sbjct: 317 CKEGMVSEA-RCVSETMTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPN 375
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ G + + A + + M+E+ P +++GL VG
Sbjct: 376 LSSYNILINGYCKSKRMNEAKRLLSEMSEKNLTPDTVTYSTLMQGLCQVG 425
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 87/197 (44%), Gaps = 11/197 (5%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
E RC S++ M G P+ T N L+ C +Q+ EA KVL M C P+L
Sbjct: 324 EARCVSET-------MTEKGAEPNAYTYNALMDGYCLHNQMDEAIKVLGIMIGKGCAPNL 376
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+I+I +++ N+A ++ EM L P + L +A+ + +
Sbjct: 377 SSYNILINGYCKSKRMNEAKRLLSEMS-EKNLTPDTVTYSTLMQGLCQVGRPREALNLFK 435
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ G Y ++++G + A K + M ER P I + ++ G+ G
Sbjct: 436 EMCSSGLLPDLMAYSILLDGFCKHGHLDEALKLLKEMHERRIKPNIILYTILIRGMFIAG 495
Query: 327 EWKLATVVRQRFAELKS 343
+ ++A ++ F++L +
Sbjct: 496 KLEVA---KELFSKLSA 509
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 77/183 (42%), Gaps = 1/183 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M +G PD T N L++ LC ++ EA + M + P++ SY+ VI +
Sbjct: 153 VMGKMFKLGIQPDAITFNTLINGLCNEGKIKEAVGLFNEMVWSGHEPNVISYNTVINGLC 212
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
T AV + ++M N G P + +L +R + +AVE + + +G P
Sbjct: 213 KNGNTIMAVRVFRKMEQNRG-KPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDV 271
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y ++ G + A + M R +P +V+GL G A V +
Sbjct: 272 VTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVTFNILVDGLCKEGMVSEARCVSET 331
Query: 338 FAE 340
E
Sbjct: 332 MTE 334
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 77/164 (46%), Gaps = 7/164 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G+ P+ + N +++ LC + A +V + M P++ +Y+ +I ++ R
Sbjct: 191 EMVWSGHEPNVISYNTVINGLCKNGNTIMAVRVFRKMEQNRGKPNVVTYNTIIDSLCKDR 250
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQG 279
N+AVE + EMV + G+ P + + ++ +A + E + R P
Sbjct: 251 LVNEAVEFLSEMV-DRGIPPDVVTYNTILHGFCSLGQLNEATRLFKEMVGRNVMPDTVT- 308
Query: 280 YEVVVEGCLECREYILAGKTVMG--MTERGFIPYIKVRQKVVEG 321
+ ++V+G C+E +++ + MTE+G P +++G
Sbjct: 309 FNILVDGL--CKEGMVSEARCVSETMTEKGAEPNAYTYNALMDG 350
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 74/187 (39%), Gaps = 1/187 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
+ ++ Q S + +M G + + N L++ LC + + A V+ M PD
Sbjct: 106 IAKKKQYSSAVSLCNQMDLFGVTHNVYSLNVLINCLCRLSHVDFAVSVMGKMFKLGIQPD 165
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++ +I + K +AV + EMV + G P V L N AV +
Sbjct: 166 AITFNTLINGLCNEGKIKEAVGLFNEMVWS-GHEPNVISYNTVINGLCKNGNTIMAVRVF 224
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+E+ Y +++ + R A + + M +RG P + ++ G +
Sbjct: 225 RKMEQNRGKPNVVTYNTIIDSLCKDRLVNEAVEFLSEMVDRGIPPDVVTYNTILHGFCSL 284
Query: 326 GEWKLAT 332
G+ AT
Sbjct: 285 GQLNEAT 291
>gi|15224262|ref|NP_179484.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75099137|sp|O64624.1|PP163_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g18940
gi|3004555|gb|AAC09028.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|15983785|gb|AAL10489.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|38564280|gb|AAR23719.1| At2g18940/F19F24.14 [Arabidopsis thaliana]
gi|330251736|gb|AEC06830.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 822
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL++L+ + C P + A R S+ A ++ M G P+ T ++
Sbjct: 335 ALSVLKEMEENSC-PADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ + EA K+ M A CVP+ +Y+ V+ + ++N+ ++M+ +M N G
Sbjct: 394 DAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN-GC 452
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYI 294
P + AL N+ M K V + F E K C GF+ + ++ C +
Sbjct: 453 SPNRA-TWNTMLALCGNKGMDKFVNRV-FREMKSC--GFEPDRDTFNTLISAYGRCGSEV 508
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A K MT GF + ++ LA G+W+
Sbjct: 509 DASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 543
Score = 41.6 bits (96), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ E+KS GY P T N L+ EA VLK M C D +Y+ ++ A
Sbjct: 302 EFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY 361
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A + +A ++ EM+ G+MP V A + +A+++ ++ GC
Sbjct: 362 VRAGFSKEAAGVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL ++ G PD T N L+ + +A ++LK + ++ PDL SY+ VI
Sbjct: 653 ILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 712
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+AV M+ EM G+ P + A + ++IE + + C
Sbjct: 713 RRGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNE 771
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+++VV+G Y AGK M F+ IK
Sbjct: 772 LTFKMVVDG------YCRAGKYSEAMD---FVSKIKT 799
>gi|295831103|gb|ADG39220.1| AT5G43820-like protein [Capsella grandiflora]
Length = 169
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I +K G PD N ++ + + E+ + M EC P+LE+YS ++ +
Sbjct: 21 EIFDNIKHKGSVPDANVYNAMICNFISARDFDESMXYYRRMLDEECEPNLETYSKLVSGL 80
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
RK +DA+E+ +EM L+ G +P G+V L + A+ + + + GC I
Sbjct: 81 IKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIYQKSRKAGCKIS 139
Query: 277 FQGYEVVVE 285
Y+++++
Sbjct: 140 ESAYKLLLK 148
>gi|242060055|ref|XP_002459173.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
gi|241931148|gb|EES04293.1| hypothetical protein SORBIDRAFT_03g047260 [Sorghum bicolor]
Length = 574
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 46/79 (58%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A+I+ M+ G+ PD T + LV LC +L +A KVL M + CVPDL++++++I
Sbjct: 335 AAEIVQTMRDQGHQPDNVTYSQLVYGLCKAGKLEDARKVLDEMEAEGCVPDLKTWTLLIQ 394
Query: 215 AMSTARKTNDAVEMMKEMV 233
+A + AV+ EM+
Sbjct: 395 GYCSAGDVDRAVQYFTEMI 413
>gi|449448914|ref|XP_004142210.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
gi|449525343|ref|XP_004169677.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Cucumis sativus]
Length = 768
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 75/157 (47%), Gaps = 1/157 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T N L+S LC + ++ EA K+L M S +C P+ +Y+ +I ++ + ++A
Sbjct: 338 GLDPDIYTYNSLISGLCKLGEIEEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEA 397
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E+ + ++ + G++P + L + A+++ E ++ KGC Y ++++
Sbjct: 398 TEIAR-LLTSKGILPDVCTFNSLIQGLCLSSNHKSAMDLFEEMKGKGCRPDEFTYNMLID 456
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R+ A + M G + + +++G
Sbjct: 457 SLCSSRKLEEALNLLKEMELNGCARNVVIYNTLIDGF 493
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 80/183 (43%), Gaps = 3/183 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+S D+ EMK G PD T N L+ SLC+ +L EA +LK M C ++ Y+
Sbjct: 428 NHKSAMDLFEEMKGKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNGCARNVVIYN 487
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I ++ +A E+ EM L G+ + L ++ + A ++++ +
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDEMELQ-GVSRDSVTYNTLIDGLCKSKRVEDAAQLMDQMIM 546
Query: 271 KGC-PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+G P F ++ C + + A V MT G P I ++ GL G +
Sbjct: 547 EGLRPDKFTYNSLLTHFC-KTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKAGRVQ 605
Query: 330 LAT 332
+A+
Sbjct: 606 VAS 608
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 104/225 (46%), Gaps = 15/225 (6%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ + F +N RI+ +E+ + + L+ SR + Y+ L+ +S + A ++ + +
Sbjct: 488 TLIDGFCKNKRIEEAEEIFDE-MELQGVSRDSVTYNTLIDGLCKS-KRVEDAAQLMDQMI 545
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
G P ++ L C++ + ADI+ M S G +PD T L+S LC
Sbjct: 546 MEGLRPDK----FTYNSLLTHFCKTGDIKKAADIVQTMTSSGCNPDIVTYATLISGLCKA 601
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
++ A+++L+ + V +Y+ VI A+ +T++A+ + +EM+ P +
Sbjct: 602 GRVQVASRLLRSIQMKGMVLTPHAYNPVIQALFKRNRTHEAMRLFREMLDKSE--PPDAI 659
Query: 245 VIKVA--AALRANREMWKAVEM-IEFLERKGCPIGFQGYEVVVEG 286
K+ + +AV+ +E +ER P F + ++ EG
Sbjct: 660 TYKIVYRGLCNGGGPIGEAVDFTVEMIERGNIP-EFSSFVMLAEG 703
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ IL +M S P+ T N ++SSLC +++ EA ++ + ++S +PD+ +++ +
Sbjct: 360 EEAVKILDQMVSRDCSPNAVTYNAIISSLCKENRVDEATEIARLLTSKGILPDVCTFNSL 419
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + + A+++ +EM G P + + +L ++R++ +A+ +++ +E G
Sbjct: 420 IQGLCLSSNHKSAMDLFEEMK-GKGCRPDEFTYNMLIDSLCSSRKLEEALNLLKEMELNG 478
Query: 273 CPIGFQGYEVVVEG 286
C Y +++G
Sbjct: 479 CARNVVIYNTLIDG 492
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/154 (23%), Positives = 68/154 (44%), Gaps = 2/154 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I ++ + GC P + + + ++ + + E S G+ PD T N LV
Sbjct: 257 ALRIKEQMVEYGC-PCTDVTVNVLINGFCKQGRIDQALSFIQEAVSEGFRPDQFTYNTLV 315
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC I A +V+ M PD+ +Y+ +I + + +AV+++ +MV +
Sbjct: 316 NGLCKIGHAKHAMEVVDAMLLGGLDPDIYTYNSLISGLCKLGEIEEAVKILDQMV-SRDC 374
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
P + ++L + +A E+ L KG
Sbjct: 375 SPNAVTYNAIISSLCKENRVDEATEIARLLTSKG 408
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 80/213 (37%), Gaps = 1/213 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L+ SGC I L+ ++ + + V + + PD N L++ L
Sbjct: 119 VLEEMKLSGCEFDRGIFLIFVESYGKFELYDEVVGIVKVMEDEYRIKPDTRFYNVLLNVL 178
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
++L M D+ +++I+I A+ A + A+ MM+EM + GL P
Sbjct: 179 VDANKLKLVESAHSSMVRRRIRHDVSTFNILIKALCKAHQVRPAILMMEEMP-SYGLSPD 237
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ + + A+ + E + GCP V++ G + A +
Sbjct: 238 ETTFTTIMQGYIEGGNLDGALRIKEQMVEYGCPCTDVTVNVLINGFCKQGRIDQALSFIQ 297
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
GF P +V GL +G K A V
Sbjct: 298 EAVSEGFRPDQFTYNTLVNGLCKIGHAKHAMEV 330
>gi|224123314|ref|XP_002319048.1| predicted protein [Populus trichocarpa]
gi|222857424|gb|EEE94971.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 143 SAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ CQ Q +L EM+S G PD T + ++ LC L EA ++LK M
Sbjct: 296 STLMKGFCQDGRPQDAQKLLEEMRSYGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQE 355
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ P++ Y+I+I M K A E+ + + G+ P + + L
Sbjct: 356 SKIEPNIFIYTILIQGMCNFGKLEAARELFSNLFVK-GIQPDVVTYTVMISGLLKGGLSN 414
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A E+ + GC Y V+++G L + AG+ + M RGF
Sbjct: 415 EACELFRDMAVHGCLPNSCTYNVIIQGFLRNGDTSNAGRLIEEMVGRGF 463
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 11/166 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM +GY PD T + +++ LC + A ++LK M C P++ YS +I ++ +
Sbjct: 72 EMVKMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDSLCKDK 131
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI----EFLERKGCPIG 276
+A+E + EMV N G+ P V+ ++ L + ++ E + +ER P
Sbjct: 132 LITEAMEFLSEMV-NRGISPN---VVTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDT 187
Query: 277 FQGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEG 321
+ ++V+G L IL + V M E+G P + +++G
Sbjct: 188 VT-FNILVDG-LSKEGMILEAQCVFETMIEKGVEPNVNTYNALMDG 231
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 72/174 (41%), Gaps = 3/174 (1%)
Query: 169 PDCGTCNYLVSSLCAI--DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T L++ C D A VL M P+ ++S ++ +S+ K DAV
Sbjct: 8 PDVYTLTILINCFCHSNHDHFHFAFSVLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAV 67
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ EMV MG P + L A+++++ +E KGC Y +++
Sbjct: 68 KLFDEMV-KMGYEPDVITYSTIINGLCKMGSTTMAIQLLKKMEEKGCKPNVVVYSTIIDS 126
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ + A + + M RG P + ++ G +G AT + ++ E
Sbjct: 127 LCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFCNLGRSNEATSLFKQMVE 180
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 83/191 (43%), Gaps = 7/191 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++Q V + ++E G P+ T N L+ C+ Q+ EA K+ M C P + SY+
Sbjct: 205 EAQCVFETMIEK---GVEPNVNTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYN 261
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I + + ++A ++ EM + L P + + A +++E +
Sbjct: 262 ILIKGHCKSGRIDEAKGLLAEMS-HKALTPDTVTYSTLMKGFCQDGRPQDAQKLLEEMRS 320
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
G Y +V++G + A + + M E P I + +++G+ G+ +
Sbjct: 321 YGLLPDLMTYSIVLDGLCKQGHLDEAFELLKAMQESKIEPNIFIYTILIQGMCNFGKLEA 380
Query: 331 ATVVRQRFAEL 341
A R+ F+ L
Sbjct: 381 A---RELFSNL 388
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 74/169 (43%), Gaps = 1/169 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M +G P+ T + L++ L + ++++A K+ M PD+ +YS +I +
Sbjct: 34 VLGNMFKLGLQPNHVTFSTLLNGLSSKAKIIDAVKLFDEMVKMGYEPDVITYSTIINGLC 93
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
T A++++K+M G P + + +L ++ + +A+E + + +G
Sbjct: 94 KMGSTTMAIQLLKKME-EKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNV 152
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++ G A M ER +P +V+GL+ G
Sbjct: 153 VTYSSILHGFCNLGRSNEATSLFKQMVERNVMPDTVTFNILVDGLSKEG 201
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 1/164 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M+ G P+ + ++ SLC + EA + L M + P++ +YS ++
Sbjct: 104 LLKKMEEKGCKPNVVVYSTIIDSLCKDKLITEAMEFLSEMVNRGISPNVVTYSSILHGFC 163
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++N+A + K+MV +MP + L + +A + E + KG
Sbjct: 164 NLGRSNEATSLFKQMV-ERNVMPDTVTFNILVDGLSKEGMILEAQCVFETMIEKGVEPNV 222
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++G + A K M +G P ++ +++G
Sbjct: 223 NTYNALMDGYCSQSQMDEAQKLFNIMVRKGCAPSVRSYNILIKG 266
>gi|215768057|dbj|BAH00286.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 506
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
+P A+AIL +P Q+ + A++E Q+ IL+E MKS G P T
Sbjct: 311 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF--ILVEKMKSNGISPSIVTY 368
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ LC Q+ EA +++ +S+ +PD SY+ +I A + A+++ + M
Sbjct: 369 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 426
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 103 DYLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
DY S L L + +A +LQ + +G VP I L + + CQ+ +
Sbjct: 155 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY----CQTGELEGAF 210
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+MKS PD T N L++ LC +++ A +L M P +E+++ +I A
Sbjct: 211 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 270
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++ EM N GL P + A N ++ +AV +++ + K
Sbjct: 271 GRTGQLEKCFIVLSEMQEN-GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 329
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Q Y +++ +E A V M G P I +++GL
Sbjct: 330 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 375
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A + C+++ + D+L+EM+ G +P T N L+ + QL + VL M
Sbjct: 229 NALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE 288
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P++ SY ++ A K +AV ++ +M + ++P + + A +
Sbjct: 289 NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPND 347
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A ++E ++ G Y ++++G + A + + ++ IP
Sbjct: 348 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 398
>gi|356525427|ref|XP_003531326.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Glycine max]
Length = 521
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/251 (23%), Positives = 107/251 (42%), Gaps = 36/251 (14%)
Query: 76 NHRIKVIDEMLES-----------FIPLRPR-SRPKIAYDYLLSYTLQSLHPLPLALAIL 123
N I + D+M ES FI + R SR +A+ Y H +P ++L
Sbjct: 27 NQAIYLFDQMTESNCRVFSVDYNRFIGVLLRHSRLHLAHHY------YRRHVIPRGFSLL 80
Query: 124 ----QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
R + + C I L L + +LL+M S+G+ PD N ++
Sbjct: 81 PFTYSRFISALCSAPNNINLPL-------------IHSLLLDMDSLGFVPDIWAFNTYLN 127
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC ++L A ++ M S PD+ SY+I+I A+ A++ ++A ++ + ++ + GL
Sbjct: 128 LLCRQNRLETALELFHSMPSKGRDPDVVSYTIIIDALCNAKRFDEAAKVWRRLI-DKGLS 186
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
P + + L + + A E++ + + G + Y +++G A K
Sbjct: 187 PDYKACVALVVGLCSGGRVDLAYELVVGVIKGGVKVNSLVYNALIDGFCRMGRVDKAMKI 246
Query: 300 VMGMTERGFIP 310
M+ G +P
Sbjct: 247 KAFMSRTGCVP 257
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 82/192 (42%), Gaps = 9/192 (4%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L +++R G V ++++ RR ++ ++ EM G PD T N L+
Sbjct: 315 LMMVERMQTKGMCDVVSYNTVITAFCKARR--TRKGYELFEEMCGKGIRPDMVTFNILID 372
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+ K+L M+ +PD Y+ V+ + K + A + ++MV N G+
Sbjct: 373 AFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVEN-GVN 431
Query: 240 PRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
P VI A L + A+ + + ++ KG Y+++V G + ++ LA
Sbjct: 432 PD---VISYNALLNGFCKTSRVMDAMHLFDEMQSKGLYPDEVTYKLIVGGLIRGKKISLA 488
Query: 297 GKTVMGMTERGF 308
+ M ERGF
Sbjct: 489 CRVWDQMMERGF 500
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 93/215 (43%), Gaps = 18/215 (8%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCG 172
LPL ++L G VP + + +L C+ ++ ++ M S G PD
Sbjct: 100 LPLIHSLLLDMDSLGFVP----DIWAFNTYLNLLCRQNRLETALELFHSMPSKGRDPDVV 155
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES-YSIVIGAMSTARKTNDAVEMMKE 231
+ ++ +LC + EAAKV + + PD ++ ++V+G S R V++ E
Sbjct: 156 SYTIIIDALCNAKRFDEAAKVWRRLIDKGLSPDYKACVALVVGLCSGGR-----VDLAYE 210
Query: 232 MVLNM--GLMPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+V+ + G + +V + R R + KA+++ F+ R GC Y +++ C
Sbjct: 211 LVVGVIKGGVKVNSLVYNALIDGFCRMGR-VDKAMKIKAFMSRTGCVPDLVTYNILLNYC 269
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E A + V M G P + ++++G
Sbjct: 270 CEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGF 304
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 73/179 (40%), Gaps = 1/179 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T N L++ C + EA ++++ M + PDL SY+ ++ A
Sbjct: 250 MSRTGCVPDLVTYNILLNYCCEEGMVDEAVRLVETMERSGVEPDLYSYNELLKGFCKANM 309
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A MM E + G+ + A +A R K E+ E + KG +
Sbjct: 310 VDRAHLMMVERMQTKGMCDVVSYNTVITAFCKA-RRTRKGYELFEEMCGKGIRPDMVTFN 368
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++++ L + K + MT+ +P VV+ L G+ +A V + E
Sbjct: 369 ILIDAFLREGSTHVVKKLLDEMTKMRVLPDCIFYTAVVDHLCKNGKVDVAHSVFRDMVE 427
>gi|295831105|gb|ADG39221.1| AT5G43820-like protein [Capsella grandiflora]
Length = 169
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 66/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIKHKGSVPDANVYNAMICNFISARDFDESMMYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G +P G+V L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGFLPTTGLVTSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCKISESAYKLLLK 148
>gi|255574462|ref|XP_002528143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223532441|gb|EEF34234.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 653
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 65/286 (22%), Positives = 117/286 (40%), Gaps = 22/286 (7%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAI 122
PN SF ++ ++D +E F + R AY Y L L + + A+++
Sbjct: 179 PNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRIDEAVSL 238
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L GC P P +L + L ++ V ++ M G P+ T N L+ LC
Sbjct: 239 LDEMQIEGCFPSPATFNVLING-LCKKGDFTRVTKLVDNMFLKGCVPNEVTYNTLIHGLC 297
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+L +A +L M S++CVP+ +Y +I + + D ++ LM +
Sbjct: 298 LKGKLDKALSLLDRMVSSKCVPNEVTYGTIINGLVKQGRALDGARVLV-------LMEER 350
Query: 243 GMVIK------VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G ++ + + L + +A+ + + KGC + Y +V+G R+ A
Sbjct: 351 GYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESMDKGCKLNTVLYSALVDGLCRDRKPDEA 410
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-------WKLATVVR 335
K + MT++G P +++G VG WK T +
Sbjct: 411 MKILSEMTDKGCAPNAFTFSSLMKGFFEVGNSHKAIEVWKDMTKIN 456
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 26/128 (20%), Positives = 59/128 (46%), Gaps = 2/128 (1%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
K + P+ + N ++ S+C + + A ++ + M +CVPD +Y ++ + +
Sbjct: 173 KDMNILPNVLSFNLIIKSMCKLGLVDNAIELFREMPVRKCVPDAYTYCTLMDGLCKVDRI 232
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++AV ++ EM + G P + L + + ++++ + KGC Y
Sbjct: 233 DEAVSLLDEMQIE-GCFPSPATFNVLINGLCKKGDFTRVTKLVDNMFLKGCVPNEVTYNT 291
Query: 283 VVEG-CLE 289
++ G CL+
Sbjct: 292 LIHGLCLK 299
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 54/248 (21%), Positives = 106/248 (42%), Gaps = 10/248 (4%)
Query: 80 KVIDEM-LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
K++D M L+ +P ++ Y+ L+ + L L AL++L R + S CVP ++
Sbjct: 272 KLVDNMFLKGCVP------NEVTYNTLI-HGLCLKGKLDKALSLLDRMVSSKCVP-NEVT 323
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L ++ ++ A +L+ M+ GY + + LVS L + EA ++ K
Sbjct: 324 YGTIINGLVKQGRALDGARVLVLMEERGYIVNEYVYSVLVSGLFKEGKSEEAMRLFKESM 383
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C + YS ++ + RK ++A++++ EM + G P +
Sbjct: 384 DKGCKLNTVLYSALVDGLCRDRKPDEAMKILSEMT-DKGCAPNAFTFSSLMKGFFEVGNS 442
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
KA+E+ + + + C Y V++ G + + + A M G P + +
Sbjct: 443 HKAIEVWKDMTKINCAENEVCYSVLIHGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSM 502
Query: 319 VEGLAGVG 326
++GL G
Sbjct: 503 IQGLCDAG 510
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 65/156 (41%), Gaps = 2/156 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ IL GC P L + E S ++ +M I + + L+
Sbjct: 410 AMKILSEMTDKGCAPNAFTFSSLMKGFFEVG-NSHKAIEVWKDMTKINCAENEVCYSVLI 468
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV-LNMG 237
LC +++EA V M + C PD+ +YS +I + A +A+++ EM+ L
Sbjct: 469 HGLCKDGKVMEAMMVWAKMLATGCRPDVVAYSSMIQGLCDAGSVEEALKLYNEMLCLEPD 528
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
P + AL + +AV+++ + +GC
Sbjct: 529 SQPDVITYNILFNALCKQSSISRAVDLLNSMLDRGC 564
>gi|413926774|gb|AFW66706.1| hypothetical protein ZEAMMB73_789977 [Zea mays]
Length = 642
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 53/230 (23%), Positives = 94/230 (40%), Gaps = 29/230 (12%)
Query: 122 ILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVS 179
IL + GC P +LL S W R + A+ LLE M GY D CN ++
Sbjct: 408 ILDEMAQKGCAPNSFTYNVLLQSLW---RAGRTTEAERLLERMSEKGYSLDTAGCNIIID 464
Query: 180 SLCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIGAM 216
LC +L A ++ GM S C+PD +YSI+I A+
Sbjct: 465 GLCRNSKLDVAMGIVDGMWEEGSTALGRLGNSFLSVVSDSSISQRCLPDRITYSILISAL 524
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++A + + EM++ + P + + + A++++ +E+KGC
Sbjct: 525 CKEGRFDEAKKKLLEMIVK-DISPDSVIYDTFIHGYCKHGKTSLAIKVLRDMEKKGCNPS 583
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y +++ G E + K + M E+G P + +++ G
Sbjct: 584 TRTYNLLIRGFEEKHKSDEIMKLMSEMEEKGVSPNVLTYNSLIKSFCQQG 633
Score = 45.1 bits (105), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 72/167 (43%), Gaps = 6/167 (3%)
Query: 145 WLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
WL R + ++L EM HP+ T N +VS LC + +A +V + S
Sbjct: 322 WLSGLVRNGRVGEAHELLREMAHERIHPNSYTYNIIVSGLCKEGKAFDARRVENFIRSGV 381
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWK 260
PD+ +Y+ ++ A + A ++ EM G P + +L RA R +
Sbjct: 382 MSPDVVTYTSLLHAYCSKGNIAAANRILDEMA-QKGCAPNSFTYNVLLQSLWRAGRTT-E 439
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
A ++E + KG + G ++++G + +A V GM E G
Sbjct: 440 AERLLERMSEKGYSLDTAGCNIIIDGLCRNSKLDVAMGIVDGMWEEG 486
>gi|357145546|ref|XP_003573680.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Brachypodium distachyon]
Length = 739
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/355 (19%), Positives = 130/355 (36%), Gaps = 38/355 (10%)
Query: 22 FSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKV 81
F+S +LRT + A A D L S A P+ ++ S R +
Sbjct: 63 FASRMPARNLRTYTTLINAYCLAGDLPASKRHLSSLLRAGFAPDSHAYTSFVVGYCRAGL 122
Query: 82 IDEMLESFI--PLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+ F+ PLR R Y LL + L + A+++ GC P P +
Sbjct: 123 LAHACRLFVLMPLRGCVRTAFTYTALL-HGLCGAGMVREAMSVFAGMQADGCAPDPHVYA 181
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ L +++ +L + + G+ P+ N L+ C + L A V + M
Sbjct: 182 TMVHG-LCGAGRTREAETLLSDAMAEGFEPNVVVYNALIDGYCNVGDLELAVDVFERMDV 240
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL------------------------- 234
C P++ +Y+ +I +RK + A+ + MV
Sbjct: 241 NGCSPNVRTYTELISGFCKSRKLDRAMMLFSRMVDAGLVPNVVTYTALIQGQCSDGQLDC 300
Query: 235 ---------NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
N GL+P + + AL + + +A ++ L +KG + Y +++
Sbjct: 301 AYRLLQSMENSGLVPNEWTCSVLIDALCKHERVGEAQLLLGSLIQKGIKVNEIVYTSLID 360
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
G + + A + + + +GF+P +++GL E A +V E
Sbjct: 361 GLCKAGRFAAADRLMQTLVSQGFVPDAHTYSSLIDGLCRQKELSEAMLVLDDMME 415
>gi|115447913|ref|NP_001047736.1| Os02g0679200 [Oryza sativa Japonica Group]
gi|50253128|dbj|BAD29374.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537267|dbj|BAF09650.1| Os02g0679200 [Oryza sativa Japonica Group]
Length = 491
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 5/185 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + + EM G P T N L+ +C + +A V GM VP++ +Y+
Sbjct: 289 QLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMRVKGYVPNVVTYT 348
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++I + A K + +++++ M N G P + L EM K +++ E + +
Sbjct: 349 VLIRGLCHAGKIDRGLKLLERMK-NGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSK 407
Query: 271 -KGCPIGFQGYEVVVEGCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ C Y +++ + +LA + V M +RG++P + +V+ GL G
Sbjct: 408 GEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVEEMVDRGYLPRRFMFNRVLNGLMLTG 467
Query: 327 EWKLA 331
+L+
Sbjct: 468 NQELS 472
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 34/270 (12%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
R++ ++ S + L PR R L++T ++ L LA+ QR P +
Sbjct: 104 RLRRPRQLTNSILGLFPRHR--------LAFTPRTFPILFERLAVSQRR------PDLAV 149
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYH----------------PDCGTCNYLVSSL 181
RL LS R Q + + LL+ S H PD T N L
Sbjct: 150 RLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGW 209
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA----VEMMKEMVLNMG 237
C + A VL+ M + P +Y+I++ A + A ++M K +
Sbjct: 210 CRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDES 269
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + L ++ KA ++ + + ++GC Y +++ + A
Sbjct: 270 CKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAV 329
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
GM +G++P + ++ GL G+
Sbjct: 330 TVFDGMRVKGYVPNVVTYTVLIRGLCHAGK 359
>gi|212275500|ref|NP_001130935.1| uncharacterized protein LOC100192040 [Zea mays]
gi|194690482|gb|ACF79325.1| unknown [Zea mays]
Length = 380
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/136 (24%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L +M+S G PD T L+ +C + +L A +VL M A PD+ +Y+ +
Sbjct: 174 ELLSDMRSCGCMPDVTTYKDLIEGMCLVGKLDAAYRVLDEMGRAGFPPDIVTYNCFLNVF 233
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ RK +DA+E+ + M+ P + E +A+++ ++++ C
Sbjct: 234 CSHRKADDALELCERMI-EAHCEPSVHTYNMMMMMFFEMGEAHRALDICLEMDKRRCQRA 292
Query: 277 FQGYEVVVEGCLECRE 292
YE+++ G +C E
Sbjct: 293 IDTYEIMIYGLFDCGE 308
>gi|18407744|ref|NP_564809.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169913|sp|Q9CAM8.1|PP100_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63150
gi|12323259|gb|AAG51611.1|AC010795_15 unknown protein; 70626-72515 [Arabidopsis thaliana]
gi|15810427|gb|AAL07101.1| unknown protein [Arabidopsis thaliana]
gi|24030501|gb|AAN41397.1| unknown protein [Arabidopsis thaliana]
gi|332195941|gb|AEE34062.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 629
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EM++ G P+ T N L++ LC + +A+++L M + P++ +++ +I A
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A ++ +EM+ + P + + + +A +M +F+ K C
Sbjct: 339 FKEGKLVEAEKLHEEMI-QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Q Y ++ G +C+ + M++RG + +++G G+ A +V
Sbjct: 398 IQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 1/195 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY PD T + L++ C ++ +A ++ M PD
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ +MV G P V L ++ A+ ++
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMV-QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNK 248
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + +++ + R +A M +G P + ++ L G
Sbjct: 249 MEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGR 308
Query: 328 WKLATVVRQRFAELK 342
W A+ + E K
Sbjct: 309 WSDASRLLSNMLEKK 323
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+++G D T + ++ C QL A VL M PD+ + S ++ ++
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSK 167
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV MG P + L + + +AV +++ + ++GC Y
Sbjct: 168 RISDAVALVDQMV-EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
Query: 281 EVVVEG 286
VV G
Sbjct: 227 GTVVNG 232
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
+L + L S L AL I + +S ++ + + + +E C++ V + S
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEM----ELNIFIYNTMIEGMCKAGKVGEAWDLFCS 528
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+ PD T N ++S LC+ L EA + + M +P+ +Y+ +I A
Sbjct: 529 LSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAA 588
Query: 225 AVEMMKEM 232
+ E++KEM
Sbjct: 589 SAELIKEM 596
>gi|297834586|ref|XP_002885175.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331015|gb|EFH61434.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 653
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/154 (27%), Positives = 70/154 (45%), Gaps = 4/154 (2%)
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
++++ L GC P V L+++ L R + + D EM G P+ T N L+
Sbjct: 475 GVVEKLLEHGCNPDVITFSLIINC--LCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIR 532
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
S C+ + K+ M + P+L +Y+ +I + +K A E++K M L +GL
Sbjct: 533 SSCSTGDTGRSVKLFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTM-LRIGLK 591
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
P + AL + +A EM +ER GC
Sbjct: 592 PDNFTYSTLIKALSESGRESEAREMFSSMERHGC 625
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 34/176 (19%), Positives = 78/176 (44%), Gaps = 1/176 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+++ A L EM+ G P+ T N +S A + + V++ + C PD+ ++S
Sbjct: 434 RTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHGVVEKLLEHGCNPDVITFS 493
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++I + A++ DA + KEM L G+ P + + + + + ++V++ ++
Sbjct: 494 LIINCLCRAKEIKDAFDCFKEM-LEWGIKPNEITYNILIRSSCSTGDTGRSVKLFANMKE 552
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G Y +++ + ++ A + + M G P +++ L+ G
Sbjct: 553 SGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESG 608
Score = 42.4 bits (98), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 57/118 (48%), Gaps = 1/118 (0%)
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
PL L++ +L+ SG ++ +L +W R ++ D+ ++ +G P
Sbjct: 119 PLLLSMELLKEIRESGYRITDELMCVLIGSW-GRLGLAKYCNDVFAQISFLGMKPSTRLY 177
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N ++ +L + L A + M S +C PD +Y+I+I + ++A+ ++K+M
Sbjct: 178 NAVIDALVKSNSLNLAYVKFQQMRSDDCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 235
Score = 41.6 bits (96), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 83/208 (39%), Gaps = 6/208 (2%)
Query: 28 MSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDE 84
+SS+ T + A+ + L ++ +PN +F LS + +K +
Sbjct: 416 LSSVYTYNAVIDCLCKARRTEHAAMFLTEMQDRGISPNLITFNTFLSGYSAGGDVKKVHG 475
Query: 85 MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSA 144
++E L P + L+ L + A + L G P +L +
Sbjct: 476 VVEKL--LEHGCNPDVITFSLIINCLCRAKEIKDAFDCFKEMLEWGIKPNEITYNILIRS 533
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
+SV + MK G P+ N ++ S C + ++ +A ++LK M P
Sbjct: 534 SCSTGDTGRSVK-LFANMKESGLSPNLYAYNAIIQSFCKMKKVKKAEELLKTMLRIGLKP 592
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEM 232
D +YS +I A+S + + ++A EM M
Sbjct: 593 DNFTYSTLIKALSESGRESEAREMFSSM 620
>gi|260446993|emb|CBG76275.1| OO_Ba0005L10-OO_Ba0081K17.26 [Oryza officinalis]
Length = 537
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 58/253 (22%), Positives = 108/253 (42%), Gaps = 17/253 (6%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTL-RSGCVP-----VPQIR-----LLLSSAW- 145
P AY L+ + L P P+ A L + R+G +P + ++R L L S
Sbjct: 139 PSAAYSVLVWMSRLGLRPTPIDYADLVFSFCRAGRLPDALQLLDEMRSLNYPLTLHSYTP 198
Query: 146 -LERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
L+ C + + AD L+ M+S G HPD N V+ LC + + +
Sbjct: 199 ILQAYCANADMQAADALISSMRSAGCHPDVVFYNIYVNGLCKVGDFDAVQRTIDESGRNG 258
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
VPD +YS I + R +A+ + E+++ MGL P + + + + +MW
Sbjct: 259 WVPDAVTYSTYIVGLCRFRYVEEALRQL-EIMVTMGLQPTVVGLNILLDYVAQDLDMWAG 317
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
E++E + G + Y V++ + R+++ K + ++ P ++ +
Sbjct: 318 KEVLEQCQELGFVVDVVTYNTVMDHFCKKRKWLRVLKLFTDLLKKPITPNVQTCNIFISC 377
Query: 322 LAGVGEWKLATVV 334
L G+++ A V
Sbjct: 378 LCRAGKFQFAKFV 390
>gi|215794293|gb|ACJ70132.1| restorer-of-fertility [Brassica napus]
Length = 667
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 80/192 (41%), Gaps = 3/192 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ W + R ++ EM+ G P+ T N +++ C+ + EA ++L+ M
Sbjct: 254 IIDGLWKDGR--QTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLREMFE 311
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD+ ++S++I A+ K +A E+ EM L G++P + +
Sbjct: 312 RKMSPDVVTFSVLINALVKEGKFFEAEELYNEM-LPRGIIPNTITYNSMIDGFSKQNRLD 370
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A M + KGC + ++++G + K + M+ RG + ++
Sbjct: 371 AAERMFYLMATKGCSPDVITFSILIDGYCGAKRVDDGMKLLHEMSRRGLVANTITYTTLI 430
Query: 320 EGLAGVGEWKLA 331
G +G A
Sbjct: 431 HGFCQLGNLNAA 442
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 83/197 (42%), Gaps = 24/197 (12%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA-----------ECVPD 205
D+L EM S G P+ TCN L+ LC +L +A ++ K M + + PD
Sbjct: 444 DLLQEMISSGVCPNVVTCNTLLDGLCNNGKLKDALEMFKVMQKSKMDLDASHPFNDVEPD 503
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y+I+I + K ++A E+ +EM + GL+P V L + +A +M
Sbjct: 504 VQTYNILICGLINEGKFSEAEELYEEMP-HRGLVPDTITYNSVIDGLCKQSRLDEATQMF 562
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVV 319
+ + KG + ++ G Y G+ G M RG + + ++
Sbjct: 563 DSMGSKGFSPDVVTFTTLING------YCKVGRVGDGLEVFCEMGRRGIVANAITYRTLI 616
Query: 320 EGLAGVGEWKLATVVRQ 336
G VG A + Q
Sbjct: 617 HGFCQVGNINGALDIFQ 633
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 76/182 (41%), Gaps = 11/182 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
++ +G+HP T + L+ LC D++ EA + C P++ +++ ++ +
Sbjct: 136 KITKLGFHPSLVTFSTLLHGLCVEDRVSEALHFFHQI----CKPNVIAFTTLMNGLCREG 191
Query: 221 KTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +AV ++ MV + GL P Q G ++ + + +E + R +
Sbjct: 192 RVVEAVALLDRMVED-GLQPNQITYGTIVDGMCKMGDTVSALNLLRKMEEVSRIKPNVVI 250
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT-VVRQ 336
Y +++G + A M E+G P + ++ G G W A ++R+
Sbjct: 251 --YSAIIDGLWKDGRQTDAQNLFSEMQEKGISPNLFTYNCMINGFCSSGRWSEAQRLLRE 308
Query: 337 RF 338
F
Sbjct: 309 MF 310
>gi|255581046|ref|XP_002531339.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529061|gb|EEF31046.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 630
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/191 (26%), Positives = 88/191 (46%), Gaps = 19/191 (9%)
Query: 143 SAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+S Q A ++ +M G PD T N +++ C + +AA +++ M+S
Sbjct: 388 NTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTYNSMLTYFCREGDIQKAADIVQTMTS 447
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK------VAAALR 253
C PD+ +Y +IG + A + A +++ + L +GMV+ V AL
Sbjct: 448 NGCEPDIVTYGTLIGGLCKAGRVEVASRLLRSIQL-------KGMVLTPHAYNPVIQALF 500
Query: 254 ANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYI-LAGKTVMGMTERGFIPY 311
+ +A+ + +E KG P F Y++V G I A V+ M E+GF+P
Sbjct: 501 KRKRTKEAMRLFREMEEKGNTPDAFT-YKIVFRGLSNSGGPIGEAVDFVIEMIEKGFLPE 559
Query: 312 IKVRQKVVEGL 322
+ EGL
Sbjct: 560 FSSFYMLAEGL 570
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 79/173 (45%), Gaps = 3/173 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMK+ G PD T N L+ SLC +L EA +L+ M + C ++ +Y+ +I +
Sbjct: 304 EMKNKGCQPDEFTYNMLIDSLCYRGKLQEALGLLREMEISGCARNVITYNTLIDGFCKNK 363
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQG 279
K +A E+ +M + GL + L +R + +A ++++ + +G P F
Sbjct: 364 KIEEAEEIFDQMEIQ-GLSRNSVTYNTLIDGLCKSRRVQEAAQLMDQMIMEGLKPDKFTY 422
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
++ C E + A V MT G P I ++ GL G ++A+
Sbjct: 423 NSMLTYFCRE-GDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAGRVEVAS 474
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 79/167 (47%), Gaps = 7/167 (4%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ + F +N +I+ +E+ + + ++ SR + Y+ L+ +S + A ++ + +
Sbjct: 354 TLIDGFCKNKKIEEAEEIFDQ-MEIQGLSRNSVTYNTLIDGLCKS-RRVQEAAQLMDQMI 411
Query: 128 RSGCVPVPQIRLLLSS--AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
G P + +S + R Q ADI+ M S G PD T L+ LC
Sbjct: 412 MEGLKPD---KFTYNSMLTYFCREGDIQKAADIVQTMTSNGCEPDIVTYGTLIGGLCKAG 468
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ A+++L+ + V +Y+ VI A+ ++T +A+ + +EM
Sbjct: 469 RVEVASRLLRSIQLKGMVLTPHAYNPVIQALFKRKRTKEAMRLFREM 515
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
V ++ M S G PD T N L+ +LC Q+ A V++ MSS VPD ++++ ++
Sbjct: 177 VENVHSTMVSKGIKPDVSTFNILIKALCKAHQIRPAILVMEEMSSYGLVPDEKTFTTLMQ 236
Query: 215 AMSTARKTNDAVEMMKEMVLNMG 237
+ A +KE +L+ G
Sbjct: 237 GFIEEGNMDGAFR-VKEQMLDAG 258
>gi|224068054|ref|XP_002302657.1| predicted protein [Populus trichocarpa]
gi|222844383|gb|EEE81930.1| predicted protein [Populus trichocarpa]
Length = 602
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/194 (25%), Positives = 84/194 (43%), Gaps = 7/194 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E + + P
Sbjct: 170 AIEVLDEMPKYGCEPDEYVFGCL----LDALCKNGSVKEAASLFEDMRVRFSPSLKHFTC 225
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C +L+EA VL M A PD+ Y+ ++ +TA K DA +++KE +
Sbjct: 226 LLYGWCKEGKLLEAKHVLVQMREAGFEPDIVVYNNLLSGYATAGKMGDAFDLLKE-IRRK 284
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + AL +M +A+ + +ER GC Y +V G + R
Sbjct: 285 GCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGFCKWRMIDKG 344
Query: 297 GKTVMGMTERGFIP 310
+ + M ++G +P
Sbjct: 345 YQILQSMIQKGHMP 358
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/128 (22%), Positives = 62/128 (48%), Gaps = 1/128 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L E++ G P+ + L+ +LC +++ EA +V M + C D+ +Y+ ++
Sbjct: 276 DLLKEIRRKGCDPNATSYTILIQALCGQEKMDEAMRVFVEMERSGCDADVVTYTALVSGF 335
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
R + ++++ M+ G MP Q + + A E+ + E++ +++ GC
Sbjct: 336 CKWRMIDKGYQILQSMI-QKGHMPNQLTYLHLMLAHEKKEELEECKELMGEMQKIGCIPD 394
Query: 277 FQGYEVVV 284
Y VV+
Sbjct: 395 LSIYNVVI 402
Score = 37.7 bits (86), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 65/163 (39%), Gaps = 1/163 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ IG PD N ++ C + ++ M + P L+++ I+I
Sbjct: 385 EMQKIGCIPDLSIYNVVIRLACKLGEVNAGVDAWNEMEVSGLSPGLDTFVIMINGFLGHG 444
Query: 221 KTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+A + KEMV L RQ G++ + AL ++ A ++ + KGC +
Sbjct: 445 YLVEACQYFKEMVERGLLSSRQYGILKDLLNALLRGEKLELAKDLWSCIVTKGCELNVDS 504
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ + + A + M + +P + K++ GL
Sbjct: 505 WTIWIHALFSNGHVKEACSYCLDMMDADLMPKPETFAKLMRGL 547
>gi|356518209|ref|XP_003527773.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic-like [Glycine max]
Length = 1113
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 90/213 (42%), Gaps = 20/213 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A L RR + ++ D+L EM+++G P+ T +
Sbjct: 211 ALKVYKRMISEGLKPSMKTYSALMVA-LGRRRDTGTIMDLLEEMETLGLRPNIYTYTICI 269
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
L ++ +A +LK M C PD+ +Y+++I A+ A K + A E+ +M
Sbjct: 270 RVLGRAGRIDDAYGILKTMEDEGCGPDVVTYTVLIDALCAAGKLDKAKELYTKMRASSHK 329
Query: 233 ---VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
V + LM + G L + W +E G Y ++VE +
Sbjct: 330 PDLVTYITLMSKFGNY----GDLETVKRFWSE------MEADGYAPDVVTYTILVEALCK 379
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ A + M RG +P + ++ GL
Sbjct: 380 SGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGL 412
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 57/275 (20%), Positives = 106/275 (38%), Gaps = 3/275 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAI 122
PN F++ + + K IDE+ E + + R +P I ++ L + + AL +
Sbjct: 821 PNIFTYNLLLDAHGKSKRIDELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDL 880
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
+ P P L L + +S+ I EM P+C N L++
Sbjct: 881 YYEIISGDFSPTPCTYGPLIGGLL-KAGRSEEAMKIFEEMPDYQCKPNCAIYNILINGFG 939
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+ A + K M PDL+SY+I++ + + +DAV +E+ L GL P
Sbjct: 940 KAGNVNIACDLFKRMIKEGIRPDLKSYTILVECLFMTGRVDDAVHYFEELKLT-GLDPDT 998
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ L +R + +A+ + ++ +G Y ++ AGK
Sbjct: 999 VSYNLMINGLGKSRRLEEALSLFSEMKNRGISPELYTYNALILHFGNAGMVDQAGKMFEE 1058
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ G P + ++ G + G A V ++
Sbjct: 1059 LQFMGLEPNVFTYNALIRGHSKSGNKDRAFSVFKK 1093
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 106/259 (40%), Gaps = 12/259 (4%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLL--SYTLQSLHPLPLALAILQRTLRSGCVPVP 135
++ +DE LE F + AY Y+L Y + P AL ++ + G +P
Sbjct: 414 NLRRLDEALELFNNMESLGVAPTAYSYVLFIDYYGKLGDP-EKALDTFEKMKKRGIMP-- 470
Query: 136 QIRLLLSSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
I +S + L + + DI ++ + G PD T N ++ Q+ +A K+L
Sbjct: 471 SIAACNASLYSLAEMGRIREAKDIFNDIHNCGLSPDSVTYNMMMKCYSKAGQIDKATKLL 530
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M S C PD+ + +I + A + ++A +M + ++ L P + L
Sbjct: 531 TEMLSEGCEPDIIVVNSLIDTLYKAGRVDEAWQMFGRLK-DLKLAPTVVTYNILITGLGK 589
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
++ KA+++ ++ GCP + +++ + LA K MT P +
Sbjct: 590 EGKLLKALDLFGSMKESGCPPNTVTFNALLDCLCKNDAVDLALKMFCRMTIMNCSPDVLT 649
Query: 315 RQKVV-----EGLAGVGEW 328
++ EG AG W
Sbjct: 650 YNTIIYGLIKEGRAGYAFW 668
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++V EM++ GY PD T LV +LC ++ +A +L M VP+L +Y+ +
Sbjct: 349 ETVKRFWSEMEADGYAPDVVTYTILVEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTL 408
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + R+ ++A+E+ M ++G+ P + + KA++ E ++++G
Sbjct: 409 ISGLLNLRRLDEALELFNNME-SLGVAPTAYSYVLFIDYYGKLGDPEKALDTFEKMKKRG 467
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 39/71 (54%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
KS+G HP + N L+ L + A K+ M +A C P++ +Y++++ A +++
Sbjct: 780 KSLGTHPTPESYNCLMDGLLGCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRI 839
Query: 223 NDAVEMMKEMV 233
++ E+ EM+
Sbjct: 840 DELFELYNEML 850
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 57/210 (27%), Positives = 85/210 (40%), Gaps = 24/210 (11%)
Query: 146 LERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+E C+S V D+L M+ G P+ T N L+S L + +L EA ++ M S
Sbjct: 374 VEALCKSGKVDQAFDMLDVMRVRGIVPNLHTYNTLISGLLNLRRLDEALELFNNMESLGV 433
Query: 203 VPDLESYSIVI---GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P SY + I G + K D E MK+ G+MP + A+L + EM
Sbjct: 434 APTAYSYVLFIDYYGKLGDPEKALDTFEKMKK----RGIMPS---IAACNASLYSLAEMG 486
Query: 260 KAVEMIE-FLERKGCPIGFQGYEVVVEGCLECREYILAG------KTVMGMTERGFIPYI 312
+ E + F + C G V ++C Y AG K + M G P I
Sbjct: 487 RIREAKDIFNDIHNC--GLSPDSVTYNMMMKC--YSKAGQIDKATKLLTEMLSEGCEPDI 542
Query: 313 KVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
V +++ L G A + R +LK
Sbjct: 543 IVVNSLIDTLYKAGRVDEAWQMFGRLKDLK 572
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 91/220 (41%), Gaps = 19/220 (8%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQ-SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
G P P+ L L C +++ + +EMK+ G P+ T N L+ + ++
Sbjct: 783 GTHPTPESYNCLMDGLL--GCNITEAALKLFVEMKNAGCCPNIFTYNLLLDAHGKSKRID 840
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN------MGLMPRQ 242
E ++ M C P++ +++I+I A+ + N A+++ E++ P
Sbjct: 841 ELFELYNEMLCRGCKPNIITHNIIISALVKSNSINKALDLYYEIISGDFSPTPCTYGPLI 900
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
G ++K A R+ M EM ++ + C I Y +++ G + +A
Sbjct: 901 GGLLK---AGRSEEAMKIFEEMPDYQCKPNCAI----YNILINGFGKAGNVNIACDLFKR 953
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
M + G P +K +VE L G A F ELK
Sbjct: 954 MIKEGIRPDLKSYTILVECLFMTGRVDDAV---HYFEELK 990
>gi|147771990|emb|CAN69053.1| hypothetical protein VITISV_022963 [Vitis vinifera]
Length = 2021
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD + L++ C I ++ +A + + M E +PD ++Y+ ++ + + DA
Sbjct: 340 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMYGLCHVGRLQDA 399
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV G MP + +L NR + +A+ +++ +E Q Y ++++
Sbjct: 400 IALFHEMVAR-GQMPDLVTYSILLDSLCKNRHLEEAMALLKAIEASNLNPDIQVYNIIID 458
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G E A ++ +G P + ++ GL G
Sbjct: 459 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 499
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 63/134 (47%), Gaps = 2/134 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y LL ++ H L A+A+L+ S P Q+ ++ + R + ++ D+
Sbjct: 416 VTYSILLDSLCKNRH-LEEAMALLKAIEASNLNPDIQVYNIIIDG-MCRAGELEAARDLF 473
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+ S G HP T N ++ LC L EA K+ M +C PD +Y+ +
Sbjct: 474 SNLSSKGLHPSVWTYNIMIHGLCKRGLLNEANKLFMEMDGNDCSPDGCTYNTIARGFLQN 533
Query: 220 RKTNDAVEMMKEMV 233
+T A+++++EM+
Sbjct: 534 NETLRAIQLLEEML 547
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 71/168 (42%), Gaps = 9/168 (5%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L+ + A ++L + L+ G P P L + C + +
Sbjct: 98 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTL----IRGLCVEGKIGE 153
Query: 158 ILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L +M G+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I
Sbjct: 154 ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIID 213
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
++ R+ +A + +MV G+ P + AL N WK V
Sbjct: 214 SLCKDRQVTEAFNLFSQMV-GQGISPDIFTYTSLVHAL-CNLCEWKHV 259
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/234 (22%), Positives = 96/234 (41%), Gaps = 12/234 (5%)
Query: 107 SYTLQSLH--PLPLALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILL 160
++ +SLH L AL+ R L P P I +LL S A + +V +
Sbjct: 35 NFHSKSLHFNTLDDALSSFNRLLHMH--PPPSIVDFAKLLTSIA---KMKHYSTVLSLST 89
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T N L++S C ++++ A VL + PD +++ +I +
Sbjct: 90 QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 149
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A+ + +M+ + G P + L A+ ++ +E+ C Y
Sbjct: 150 KIGEALHLFDKMI-DEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 208
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+++ + R+ A M +G P I +V L + EWK T +
Sbjct: 209 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTL 262
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 98/231 (42%), Gaps = 10/231 (4%)
Query: 79 IKVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
+KV D M+ + F P I+Y L++ + +H + A+ + + R +P +
Sbjct: 330 VKVFDMMVRKGFAP------DVISYTTLINGYCK-IHKIDKAMYLFEEMCRKEWIPDTKT 382
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L L + Q + EM + G PD T + L+ SLC L EA +LK +
Sbjct: 383 YNTLMYG-LCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNRHLEEAMALLKAI 441
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
++ PD++ Y+I+I M A + A ++ + + GL P + L
Sbjct: 442 EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS-SKGLHPSVWTYNIMIHGLCKRGL 500
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ +A ++ ++ C Y + G L+ E + A + + M RGF
Sbjct: 501 LNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGF 551
>gi|255582957|ref|XP_002532249.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223528067|gb|EEF30143.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 507
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/145 (27%), Positives = 69/145 (47%), Gaps = 8/145 (5%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD CN ++ +LC +++ EA +V + MS C+P+ +Y+ +I S R+ E+
Sbjct: 286 PDVVICNCIIDALCFKNRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYEL 345
Query: 229 MKEMVLNMG-LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE-- 285
+ EM+ G MP + AL+ E+ ++E +ER GC I Y +++
Sbjct: 346 LDEMLDKKGSCMPDHITFNYLLKALKKPEEL---PLVLERMERNGCMISTDTYNLILRLY 402
Query: 286 GCLECREYILAGKTVMGMTERGFIP 310
+C E + G T M + G P
Sbjct: 403 ADWDCEERV--GDTWNEMEKLGLGP 425
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 99/211 (46%), Gaps = 16/211 (7%)
Query: 48 QQIPELLGSFEEACQN---PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRP-KI 100
++PE L F E Q PN ++ + +F + R++ + E+L+ + + P I
Sbjct: 302 NRVPEALEVFREMSQQGCLPNGATYNSLIKHFSRIRRMEKVYELLDEMLDKKGSCMPDHI 361
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
++YLL L+ LPL L +R R+GC+ L+ + + C+ + V D
Sbjct: 362 TFNYLLK-ALKKPEELPLVL---ERMERNGCMISTDTYNLILRLYADWDCE-ERVGDTWN 416
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ +G PD + ++ L ++ +A M+S V + + +++ +M+
Sbjct: 417 EMEKLGLGPDRRSYTIMIHWLYEKGRINDALHYFGEMTSKGMVSEPRT-EMLVSSMNMKL 475
Query: 221 KTNDAVEMMKEM---VLNMGLMPRQGMVIKV 248
K NDA + K+ V ++G M ++ I+V
Sbjct: 476 KDNDAEQGEKDAINGVKSLGSMHKRRREIRV 506
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + +A+ LL K + D T N +++ C + + EA + K + ++C PDL +
Sbjct: 196 RYKHVQIAESLLYSKGKDFGMDIKTMNIVLNGWCVLGNVHEAKRFWKDIIGSKCKPDLFT 255
Query: 209 YSIVIGAMSTARKTNDAVEMMKEM 232
Y I A++ K A+++ + M
Sbjct: 256 YGTFIKALTKKGKLGTALKIYRAM 279
>gi|449469490|ref|XP_004152453.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ VA +L EM+S GY PD + N L+ + + + EA V K M +A CVP+ +YSI+
Sbjct: 306 EKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSIL 365
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMG--LMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ + +D E+ +M + ++I+V +E+ V + L
Sbjct: 366 LNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV---VTLFHDLVD 422
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+ + YE +V C + + A K + M +G +P K ++E +
Sbjct: 423 ENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDE 482
Query: 331 ATVVRQRFAELKS 343
A V E+ S
Sbjct: 483 ALVAFNTMNEVGS 495
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C ++ + D + M G P+ T +Y+V + + +L + A +LK M S +PD
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEM 232
+ SY+++I A + +A+++ K+M
Sbjct: 324 ISSYNVLIEAHAKLGSIKEAMDVFKQM 350
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM+ G PD T N L+S+ A EA V K M VP++ +YS ++
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300
Query: 218 TARKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K ++KEM + G +P ++I+ A L + +E A+++ + ++ GC
Sbjct: 301 KLGKLEKVAMLLKEME-SEGYLPDISSYNVLIEAHAKLGSIKE---AMDVFKQMQAAGCV 356
Query: 275 IGFQGYEVVV 284
Y +++
Sbjct: 357 PNASTYSILL 366
>gi|356510096|ref|XP_003523776.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At5g18475-like [Glycine max]
Length = 640
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 54/239 (22%), Positives = 104/239 (43%), Gaps = 24/239 (10%)
Query: 46 DYQQIPELLGSFEEACQNPNPFS---FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAY 102
DYQ L PN F+ F+ +N R+K E+ E + + Y
Sbjct: 343 DYQNHHFLTDGVLAGLSYPNLFTYSTFMDGLCRNGRVKEAFELFEEMVSRDHIVPDPLTY 402
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---IL 159
+ L++ + P A +++ + C P + SA ++ C+ + D +L
Sbjct: 403 NVLINEFCRRGKP-DRARNVIEFMKSNRCYP----NVYNYSALVDGLCKVGKLEDAKGVL 457
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EMK G PD T L++ LC Q+ EA +LK + C D ++++++G +
Sbjct: 458 AEMKGSGLKPDTVTYTSLINFLCRNGQIGEAMGLLKEIKENTCQADTVTFNVILGGLCRE 517
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIK------VAAALRANREMWKAVEMIEFLERKG 272
+ +A++M+++ +P+QG+ + V +L E+ KA E++ + +G
Sbjct: 518 DRFEEALDMLEK-------LPQQGVYLNKGSYRIVLNSLTQKCELKKAKELLGLMLSRG 569
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 51/97 (52%), Gaps = 2/97 (2%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
R++L+S L ++C+ + ++L M S G+ P T N L+ LC + +AA L +
Sbjct: 543 RIVLNS--LTQKCELKKAKELLGLMLSRGFRPHYATSNELLVCLCKAGMVDDAAVALFYL 600
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
P LES+ ++IG + RK E++ E+V+
Sbjct: 601 VEMGFQPGLESWEVLIGLICRERKLLYVFELLNELVI 637
>gi|449487793|ref|XP_004157803.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic-like [Cucumis sativus]
Length = 864
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ VA +L EM+S GY PD + N L+ + + + EA V K M +A CVP+ +YSI+
Sbjct: 306 EKVAMLLKEMESEGYLPDISSYNVLIEAHAKLGSIKEAMDVFKQMQAAGCVPNASTYSIL 365
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMG--LMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ + +D E+ +M + ++I+V +E+ V + L
Sbjct: 366 LNLYGKHGRYDDVRELFLQMKESSAEPDATTYNILIRVFGEGGYFKEV---VTLFHDLVD 422
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+ + YE +V C + + A K + M +G +P K ++E +
Sbjct: 423 ENIDPNMETYEGLVFACGKGGLHEDAKKILFHMNGKGIVPSSKAYSGLIEAYGQAALYDE 482
Query: 331 ATVVRQRFAELKS 343
A V E+ S
Sbjct: 483 ALVAFNTMNEVGS 495
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C ++ + D + M G P+ T +Y+V + + +L + A +LK M S +PD
Sbjct: 264 CAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFGKLGKLEKVAMLLKEMESEGYLPD 323
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEM 232
+ SY+++I A + +A+++ K+M
Sbjct: 324 ISSYNVLIEAHAKLGSIKEAMDVFKQM 350
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 60/130 (46%), Gaps = 7/130 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM+ G PD T N L+S+ A EA V K M VP++ +YS ++
Sbjct: 241 LFAEMRHEGVQPDLVTYNTLLSACAARGLGDEAEMVFKTMIEGGIVPEITTYSYIVETFG 300
Query: 218 TARKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K ++KEM + G +P ++I+ A L + +E A+++ + ++ GC
Sbjct: 301 KLGKLEKVAMLLKEME-SEGYLPDISSYNVLIEAHAKLGSIKE---AMDVFKQMQAAGCV 356
Query: 275 IGFQGYEVVV 284
Y +++
Sbjct: 357 PNASTYSILL 366
>gi|357499681|ref|XP_003620129.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495144|gb|AES76347.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 543
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 64/129 (49%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL M G +PD + N L+ C I ++ EA + K M +PD+ +Y+ +I +
Sbjct: 324 ILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEAMNLFKEMHHKHIIPDVVTYNSLIDGLC 383
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + A++++ EM + G+ P + AL N ++ KA+ ++ L+ +G
Sbjct: 384 KLGKISYALKLVDEM-HDRGVPPDIITYSSILDALCKNHQVDKAIALLTKLKDQGIRPNM 442
Query: 278 QGYEVVVEG 286
Y ++++G
Sbjct: 443 YTYTILIDG 451
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L+R G + P + ++ S ++ C+ + V D + EM S G P+ T +
Sbjct: 181 ALDLLRRV--DGNLVQPNV--VMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 236
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S + QL +A + M PD+ +++I++ K + + + M++
Sbjct: 237 ALISGFFTVGQLKDAIDLFNKMILENIKPDVYTFNILVDGFCKDGKMKEG-KTVFAMMMK 295
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + +E+ KA ++ + ++G Q Y ++++G + ++
Sbjct: 296 QGIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDE 355
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M + IP + +++GL +G+ A
Sbjct: 356 AMNLFKEMHHKHIIPDVVTYNSLIDGLCKLGKISYA 391
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T L+ C + ++ +A +L MS PD++SY+I+I +K ++A
Sbjct: 297 GIKPNVVTYCSLMDGYCLVKEVNKAKSILYTMSQRGVNPDIQSYNILIDGFCKIKKVDEA 356
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + KEM + ++P + L ++ A+++++ + +G P Y +++
Sbjct: 357 MNLFKEM-HHKHIIPDVVTYNSLIDGLCKLGKISYALKLVDEMHDRGVPPDIITYSSILD 415
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + A + + ++G P + +++GL G + A
Sbjct: 416 ALCKNHQVDKAIALLTKLKDQGIRPNMYTYTILIDGLCKGGRLEDA 461
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 70/161 (43%), Gaps = 16/161 (9%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
+ +K++DEM + +P P I Y +L L H + A+A+L + G P
Sbjct: 390 YALKLVDEMHDRGVP------PDIITYSSILD-ALCKNHQVDKAIALLTKLKDQGIRP-- 440
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ + ++ C+ + D I ++ GY+ T ++ C EA
Sbjct: 441 --NMYTYTILIDGLCKGGRLEDAHNIFEDLLVKGYNITVNTYTVMIHGFCNKGLFDEALA 498
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+L M C+PD +Y I+I ++ + ND E ++EM+
Sbjct: 499 LLSKMKDNSCIPDAVTYEIIIRSLFD-KDENDKAEKLREMI 538
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 12/174 (6%)
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
++ +GY GT L+ LC + + A +L+ + P++ YS +I M
Sbjct: 158 FQLDQVGY----GT---LIHGLCKVGETRAALDLLRRVDGNLVQPNVVMYSTIIDGMCKD 210
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ NDA ++ EMV + G+ P + + ++ A+++ + +
Sbjct: 211 KHVNDAFDLYSEMV-SKGISPNVVTYSALISGFFTVGQLKDAIDLFNKMILENIKPDVYT 269
Query: 280 YEVVVEGCLECREYILA-GKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ ++V+G C++ + GKTV M ++G P + +++G V E A
Sbjct: 270 FNILVDGF--CKDGKMKEGKTVFAMMMKQGIKPNVVTYCSLMDGYCLVKEVNKA 321
>gi|224071479|ref|XP_002303480.1| predicted protein [Populus trichocarpa]
gi|222840912|gb|EEE78459.1| predicted protein [Populus trichocarpa]
Length = 836
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
AD+ + G P TC +L+SSL ++L ++ +V + +PD+ +S +I A
Sbjct: 206 ADVFSLLAKKGLFPSLKTCTFLLSSLVKANELKKSYEVYDFICLGGIIPDVHLFSTMINA 265
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ +DA+ + +M +G+ P + L + + +A E + ++
Sbjct: 266 FCKGHREDDAIGLFSKME-KLGVAPNVVTYNNIIHGLCKSGRLDEAYRFKEKMVKEKVSP 324
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y V + G ++ + A + M+E GF+P V +++G +G A +R
Sbjct: 325 SLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKIR 384
Query: 336 Q 336
Sbjct: 385 D 385
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 74/179 (41%), Gaps = 1/179 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ LC D++ EA+++ VP++ +Y ++I A
Sbjct: 561 EMVKKGIQPDIYTFNLLLHGLCNADKIDEASRLWHECKKNGYVPNVYTYGVMIDGYCKAN 620
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + ++ E+V + L + + A N M A + + ++ +G + Y
Sbjct: 621 KVEEGENLLNELV-SKKLELNSVVYNSLIRAYCINGNMNAAFRLRDDMKSRGVLLSCATY 679
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ G A + M + G +P + ++ G + +G+ +V Q +
Sbjct: 680 SSLMHGLCNIGLVDDAKHLLDEMRKEGLLPNVVCYTTIIGGYSKLGQMNKVNIVLQEMS 738
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/190 (24%), Positives = 77/190 (40%), Gaps = 39/190 (20%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ ++++ L +M S G P+ T N L+ C DQ+ +A VL+ M
Sbjct: 365 NTLIDGYCKMGNISEALKIRDDMLSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIG 424
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ S+S+VI + + A+ ++EM+L L P G++ + + L
Sbjct: 425 RGLPINQGSFSMVINWLCLKFRFVTALHFIREMLLR-NLRPNDGLLTTLVSGL------- 476
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
C G QG V L CR L GK GF+P I ++
Sbjct: 477 -------------CKAGKQGEAVE----LWCR---LLGK--------GFVPNIVTSNALI 508
Query: 320 EGLAGVGEWK 329
GL G +
Sbjct: 509 HGLCKAGNMQ 518
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 38/82 (46%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q V +L EM S HP+ T ++ C + + EAAK+L M+ +PD +Y+
Sbjct: 726 QMNKVNIVLQEMSSHNIHPNKFTYTIMIDGFCKLGKTKEAAKLLNEMTEKGILPDAVTYN 785
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
+ K +A ++ EM
Sbjct: 786 AFTNGLCKEGKVEEAFKVCDEM 807
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/160 (22%), Positives = 74/160 (46%), Gaps = 3/160 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T + ++ L ++++ EA VLK MS VP+ Y+ +I ++A+++
Sbjct: 324 PSLITYSVFINGLIKLEKIDEANCVLKEMSELGFVPNEVVYNTLIDGYCKMGNISEALKI 383
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-C 287
+M L+ G+ P + + + ++ +A ++E + +G PI + +V+ C
Sbjct: 384 RDDM-LSKGISPNSVTLNSLIQGFCKSDQIGQAENVLEEMIGRGLPINQGSFSMVINWLC 442
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
L+ R ++ A + M R P + +V GL G+
Sbjct: 443 LKFR-FVTALHFIREMLLRNLRPNDGLLTTLVSGLCKAGK 481
>gi|302765375|ref|XP_002966108.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
gi|300165528|gb|EFJ32135.1| hypothetical protein SELMODRAFT_85930 [Selaginella moellendorffii]
Length = 382
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 1/156 (0%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
C P+ LL + + +S ++L MK+ G PD T LV LC ++ A
Sbjct: 114 CSPLVTYNTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGLCKESKVAAA 173
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
+VL M A CVP+L + ++ + AR+ +DA+ +M++M G P +
Sbjct: 174 WEVLCEMLDAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCR-GCTPNVVTYGTLID 232
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
L + A + E + GC Y +++G
Sbjct: 233 GLCKVGRVKDAGNLYEVMTGDGCDADVVTYSTLIDG 268
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 8/242 (3%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQ--RTLRSGCVPVPQI--RLLLSSAWLERRC 150
RS + +L S + L ++ +L+ RT++ + + +LLS W E+R
Sbjct: 5 RSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEKR- 63
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q++A IL EM+ G P+ T N L+ LC ++ A ++ + M S EC P + +
Sbjct: 64 LDQALA-ILHEMRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPLVTYNT 122
Query: 211 IVIGAMSTAR-KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
++ G T + ++ AVE+++ M G P + L ++ A E++ +
Sbjct: 123 LLDGLFWTGKLESAMAVELLESMKAR-GCSPDVITSTILVDGLCKESKVAAAWEVLCEML 181
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
GC + ++ G R A + MT RG P + +++GL VG K
Sbjct: 182 DAGCVPNLVTSKSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVK 241
Query: 330 LA 331
A
Sbjct: 242 DA 243
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 81/177 (45%), Gaps = 19/177 (10%)
Query: 84 EMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLS 142
E+LES ++ R P + +L L + A +L L +GCVP L+ S
Sbjct: 140 ELLES---MKARGCSPDVITSTILVDGLCKESKVAAAWEVLCEMLDAGCVP----NLVTS 192
Query: 143 SAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ L C+++ V+D L M+ + G P+ T L+ LC + ++ +A + + M+
Sbjct: 193 KSLLHGLCRARRVSDALALMRDMTCRGCTPNVVTYGTLIDGLCKVGRVKDAGNLYEVMTG 252
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV--------LNMGLMPRQGMVIKV 248
C D+ +YS +I + + ++A ++ MV L L +G ++KV
Sbjct: 253 DGCDADVVTYSTLIDGLCKGGRVDEAHLLLARMVRMGTPSSTLTYNLQHFEGKMVKV 309
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 4/164 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+S P+ C+ L+ LC + ++ + + M A V D Y++++ + +
Sbjct: 3 EMRSNNMVPNMFLCSILIDGLCKAKRSIDVLRCFRTMQGAGIVADTVIYTVLLSGLWKEK 62
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + A+ ++ EM + G P + L N E +A E+ E ++ C Y
Sbjct: 63 RLDQALAILHEM-RDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECS-PLVTY 120
Query: 281 EVVVEGCLECR--EYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++G E +A + + M RG P + +V+GL
Sbjct: 121 NTLLDGLFWTGKLESAMAVELLESMKARGCSPDVITSTILVDGL 164
>gi|255660972|gb|ACU25655.1| pentatricopeptide repeat-containing protein [Verbena montevidensis]
Length = 376
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR- 291
G M +I + N+ +A +++ L KG G Y ++++G CL+ R
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRV 250
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
E L +T +GF P +++ ++ GL VG+ +LA
Sbjct: 251 ERALX--LWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 133 SAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGT 192
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P + +Y+ +I + + +A ++KE+ L+ GL P + L + +
Sbjct: 193 MHCSPTIITYNTLINGLCKNKMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHRVE 251
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + + KG Q + +++ G + LA M P + ++
Sbjct: 252 RALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 311
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 312 EGFYKDGDIRNALVIWAR 329
>gi|224130786|ref|XP_002328376.1| predicted protein [Populus trichocarpa]
gi|222838091|gb|EEE76456.1| predicted protein [Populus trichocarpa]
Length = 599
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 63/278 (22%), Positives = 115/278 (41%), Gaps = 28/278 (10%)
Query: 67 FSFLSNFPQ----NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAI 122
+ FL +FP NH + + + RS P+ +L + ++ + ALA
Sbjct: 30 YLFLPDFPSFLFFNHH------HITTSTCTKKRSLPQNNGGFLSNNSIS----IDDALAS 79
Query: 123 LQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
R LR P P + R L S A ++ Q +V + +M G + + N L+
Sbjct: 80 FYRMLRMN--PRPSVVEFGRFLGSIA---KKKQYSTVVSLCNQMDLFGVTHNVYSLNILI 134
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC ++ +V A VL M PD +++ +I + +AV + EMV G
Sbjct: 135 NCLCRLNHVVFAISVLGKMFKLGIQPDAITFNTLINGRCIEGEIKEAVGLFNEMV-RRGH 193
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--A 296
P V L + A++++ +E KGC Y +++ C++ ++ A
Sbjct: 194 QPDVISYSTVINGLCKSGNTSMALQLLRKMEEKGCKPNLVAYTTIIDSL--CKDTLVNDA 251
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M +RG P + ++ G +G AT++
Sbjct: 252 MDLLSEMVDRGIPPDVVTYSTILHGFCSLGHLNEATIL 289
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/212 (21%), Positives = 92/212 (43%), Gaps = 8/212 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTC 174
+AL +L++ GC P L+ + ++ C+ V D +L EM G PD T
Sbjct: 215 MALQLLRKMEEKGCKP----NLVAYTTIIDSLCKDTLVNDAMDLLSEMVDRGIPPDVVTY 270
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+ ++ C++ L EA + M +P+ +++I++ + ++A + + M
Sbjct: 271 STILHGFCSLGHLNEATILFNEMVGRNVMPNTVTFTILVDGLCKEGMVSEARCVFEAMT- 329
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G P + N +M +A ++++ + KGC Y +++ G + R
Sbjct: 330 KKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRRLD 389
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A ++ M+E+ P +++GL VG
Sbjct: 390 EAKSLLVEMSEKELTPDTVTYSTLMQGLCQVG 421
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 94/213 (44%), Gaps = 20/213 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L + GC PV +L + + +RR + +L+EM PD T + L+
Sbjct: 356 AQKVLDIMVDKGCAPVVHSYNILINGYCKRR-RLDEAKSLLVEMSEKELTPDTVTYSTLM 414
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM------ 232
LC + + EA + K M S+ +PDL +YS ++ + ++A++++K M
Sbjct: 415 QGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQESKIE 474
Query: 233 ---VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
VL L+ +GM I A L +E++ L G + Y ++++G L+
Sbjct: 475 PDIVLYNILI--EGMFI--AGKLEVAKELFSK------LFADGIQPTIRTYTIMIKGLLK 524
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M + GF+P +++G
Sbjct: 525 EGLSDEAYELFRKMEDDGFLPNSCSYNVIIQGF 557
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 4/169 (2%)
Query: 143 SAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ CQ Q ++ EM S G PD T + L+ LC L EA K+LK M
Sbjct: 411 STLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQE 470
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ PD+ Y+I+I M A K A E+ ++ + G+ P + L
Sbjct: 471 SKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFAD-GIQPTIRTYTIMIKGLLKEGLSD 529
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A E+ +E G Y V+++G L+ ++ A + + M + F
Sbjct: 530 EAYELFRKMEDDGFLPNSCSYNVIIQGFLQNQDSSTAIRLIDEMVGKRF 578
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 81/176 (46%), Gaps = 4/176 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++Q V DI+++ G P + N L++ C +L EA +L MS E PD +YS
Sbjct: 355 EAQKVLDIMVDK---GCAPVVHSYNILINGYCKRRRLDEAKSLLVEMSEKELTPDTVTYS 411
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++ + + +A+ + KEM + GL+P + L + + +A+++++ ++
Sbjct: 412 TLMQGLCQVGRPQEALNLFKEMC-SSGLLPDLMTYSTLLDGLCKHGHLDEALKLLKSMQE 470
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++EG + +A + + G P I+ +++GL G
Sbjct: 471 SKIEPDIVLYNILIEGMFIAGKLEVAKELFSKLFADGIQPTIRTYTIMIKGLLKEG 526
Score = 45.1 bits (105), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 77/180 (42%), Gaps = 4/180 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G P+ T N L+ C +Q+ EA KVL M C P + SY+I+I R+
Sbjct: 328 MTKKGAEPNAYTYNALMDGYCLNNQMDEAQKVLDIMVDKGCAPVVHSYNILINGYCKRRR 387
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A ++ EM L P + L +A+ + + + G Y
Sbjct: 388 LDEAKSLLVEMS-EKELTPDTVTYSTLMQGLCQVGRPQEALNLFKEMCSSGLLPDLMTYS 446
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+++G + A K + M E P I + ++EG+ G+ ++A ++ F++L
Sbjct: 447 TLLDGLCKHGHLDEALKLLKSMQESKIEPDIVLYNILIEGMFIAGKLEVA---KELFSKL 503
>gi|115476328|ref|NP_001061760.1| Os08g0402600 [Oryza sativa Japonica Group]
gi|113623729|dbj|BAF23674.1| Os08g0402600, partial [Oryza sativa Japonica Group]
Length = 554
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
+P A+AIL +P Q+ + A++E Q+ IL+E MKS G P T
Sbjct: 359 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF--ILVEKMKSNGISPSIVTY 416
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ LC Q+ EA +++ +S+ +PD SY+ +I A + A+++ + M
Sbjct: 417 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 474
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 103 DYLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
DY S L L + +A +LQ + +G VP I L + + CQ+ +
Sbjct: 203 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY----CQTGELEGAF 258
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+MKS PD T N L++ LC +++ A +L M P +E+++ +I A
Sbjct: 259 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 318
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++ EM N GL P + A N ++ +AV +++ + K
Sbjct: 319 GRTGQLEKCFIVLSEMQEN-GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 377
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Q Y +++ +E A V M G P I +++GL
Sbjct: 378 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 423
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A + C+++ + D+L+EM+ G +P T N L+ + QL + VL M
Sbjct: 277 NALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE 336
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P++ SY ++ A K +AV ++ +M + ++P + + A +
Sbjct: 337 NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPND 395
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A ++E ++ G Y ++++G + A + + ++ IP
Sbjct: 396 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 446
>gi|115445705|ref|NP_001046632.1| Os02g0304800 [Oryza sativa Japonica Group]
gi|113536163|dbj|BAF08546.1| Os02g0304800 [Oryza sativa Japonica Group]
Length = 617
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +++ + +M GY P N L+ + ++ K K M C P+
Sbjct: 294 LGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPN 353
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y +I A RK DA++M EM L+ G++P GM+ L A+ +
Sbjct: 354 IDTYRKMIRAFLRERKVADALQMFDEM-LSRGILPSTGMITLFIEPLCTFGPPHAALLIY 412
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGK--TVMG----MTERGFIPYIKVRQKVV 319
+ + GC I + Y++++E + GK TV+ M E G ++ + +V
Sbjct: 413 KRSRKAGCRISMKAYKLLLE------RLAMFGKSGTVLQIWEEMQESGHPSDKEIYEFIV 466
Query: 320 EGLAGVGEWKLATVV 334
GL VG+ A V
Sbjct: 467 NGLCNVGKVDAAVSV 481
>gi|302763057|ref|XP_002964950.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
gi|300167183|gb|EFJ33788.1| hypothetical protein SELMODRAFT_406577 [Selaginella moellendorffii]
Length = 464
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 90/195 (46%), Gaps = 7/195 (3%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ L+L +A E ++ + D+++EM G+ P T N L+ C DQ+ A ++L+
Sbjct: 269 LNLILQAARPE---EALGMTDVMVEM---GFCPTIVTFNALLELFCNTDQMDSATELLET 322
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M+ ++C P+ +YSI++ + + +A ++++V+ G P + A L
Sbjct: 323 MARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVV-CGYAPNLLVCNAYVAGLCKTG 381
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
EM A + + +GC Y +VEG + A + + M G +P
Sbjct: 382 EMDLASRFLTVMAEEGCRANTATYNSLVEGFCKLGRMDEAERVLEEMIAEGSLPDSTTYN 441
Query: 317 KVVEGLAGVGEWKLA 331
+++GL G+ + A
Sbjct: 442 VLIQGLCSAGQIEHA 456
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 74/311 (23%), Positives = 120/311 (38%), Gaps = 51/311 (16%)
Query: 59 EACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSY------- 108
EAC NPN ++ L+ + RI + EML+ L + Y L+
Sbjct: 91 EACYNPNTVAYNCLLNTLVKAGRIYQVREMLDR-KTLGEFVHSEFTYGTLVHGHCLAGEF 149
Query: 109 ------------------TLQSLHPLPL------ALAILQRTLRSGCVPVPQIRLLLSSA 144
+L LH L L LA+ +R + V + LS A
Sbjct: 150 DEAKRLVEEFKDTGMSPGSLVVLHSLMLKGFSEAGLAMAKRGVAPNRVAYNAMARGLSKA 209
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
L D++ M+S G+ T N +V LC + EA KV++ M P
Sbjct: 210 GL-----LDEAFDLMGVMESAGFALTAVTFNPVVEFLCKSGRPDEACKVMETMLLRNIEP 264
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR---ANREMWKA 261
++ + ++++ A + +A+ M MV MG P ++ A L +M A
Sbjct: 265 NILTLNLIL----QAARPEEALGMTDVMV-EMGFCP---TIVTFNALLELFCNTDQMDSA 316
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
E++E + R C F Y ++V+ E + A + + G+ P + V V G
Sbjct: 317 TELLETMARSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLVVCGYAPNLLVCNAYVAG 376
Query: 322 LAGVGEWKLAT 332
L GE LA+
Sbjct: 377 LCKTGEMDLAS 387
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 72/161 (44%), Gaps = 9/161 (5%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
+ L F ++ E+LE+ R + +P ++ + + A A L++ +
Sbjct: 302 ALLELFCNTDQMDSATELLETMA--RSKCKPNFVTYSIMVQKFAEMGRMVEARAFLEQLV 359
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
G P LL+ +A++ C++ + + L M G + T N LV C +
Sbjct: 360 VCGYAP----NLLVCNAYVAGLCKTGEMDLASRFLTVMAEEGCRANTATYNSLVEGFCKL 415
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
++ EA +VL+ M + +PD +Y+++I + +A + A
Sbjct: 416 GRMDEAERVLEEMIAEGSLPDSTTYNVLIQGLCSAGQIEHA 456
>gi|255540825|ref|XP_002511477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550592|gb|EEF52079.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 754
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 95/222 (42%), Gaps = 7/222 (3%)
Query: 125 RTLRSGCVPVPQI---RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
RT+ G + VP I R L+ + + + + V+++L EM+S G PD + N L+ +
Sbjct: 272 RTMNEGGM-VPDITTYRNLVET--FGKLNKLEKVSELLKEMESSGNLPDISSYNVLLEAY 328
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ + A V + M A CVP+ +YS+++ + +D E+ EM ++ P
Sbjct: 329 ASKGDIRHAMGVFRQMQEARCVPNAVTYSMLLNLYGGHGRYDDVRELFLEMKVS-NTEPD 387
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
G + + V + + + YE ++ C + + A K ++
Sbjct: 388 VGTYNVLIEVFGEGGYFKEVVTLFHDMVEENVEPNMGTYEGLIYACGKGGLHEDAKKILL 447
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
M E+G +P K V+E ++ A V+ E+ S
Sbjct: 448 HMDEKGIVPSTKAYTGVIEAYGQAASYEEALVMFNTMNEMGS 489
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 36/170 (21%), Positives = 78/170 (45%), Gaps = 2/170 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +E++ + PD T ++S C + E+ + + + ++ +P + Y
Sbjct: 543 QFEEAIKTYVELEKARFQPDERTFEAVLSVYCTAGLVDESEEQFREIRASGILPSVMCYC 602
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLE 269
++I + + + +DA E++ EMV N Q +V K+ + W+ VE + + L
Sbjct: 603 MMIAVYARSNRWDDAYEVLDEMVTNKVSNIHQ-VVGKMMKGDYDDYSNWQMVEYVFDKLN 661
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+GC +G + Y ++E + A + + +RG P + + K+V
Sbjct: 662 SEGCGLGMRFYNTLLEALWWLGQKERAARVLSEAIKRGLFPELFRKSKLV 711
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/87 (24%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C ++ + D + M G PD T LV + +++L + +++LK M S+ +PD
Sbjct: 258 CANRGLGDEAEMVFRTMNEGGMVPDITTYRNLVETFGKLNKLEKVSELLKEMESSGNLPD 317
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEM 232
+ SY++++ A ++ A+ + ++M
Sbjct: 318 ISSYNVLLEAYASKGDIRHAMGVFRQM 344
>gi|308080398|ref|NP_001183938.1| PPR-814a [Zea mays]
gi|223929924|gb|ACN24620.1| PPR-814a [Zea mays]
Length = 814
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 56/235 (23%), Positives = 95/235 (40%), Gaps = 49/235 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ L+ C+++ DILL +G P
Sbjct: 125 HRPELALAFFGQLLRTGL----RVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C PD+ +Y+ VI N A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYNTVIDGFFKEGDVNKACD 240
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P F Y VV
Sbjct: 241 LFKEMV------------------------------------QRGIPPDFVTYSSVVHAL 264
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ R A + M +G +P ++ G + G+WK A V F E++
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMR 316
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 46/236 (19%), Positives = 97/236 (41%), Gaps = 17/236 (7%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAI 122
PN ++ + RI +D+ +E F + + Y Y L + L A +
Sbjct: 427 PNVLTYTTVIAALCRIGKMDDAMEKFNQMIDQGVAPDKYAYHCLIQGFCTHGSLLKAKEL 486
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQ------SQSVADILLEMKSIGYHPDCGTCNY 176
+ + +G + ++L S+ + C+ +Q++ D+ + ++G HP +
Sbjct: 487 ISEIMNNGM----HLDIVLFSSIINNLCKLGRVMDAQNIFDLTV---NVGLHPTAVVYSM 539
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C + ++ +A +V M SA P+ Y ++ + ++ + + +EM L
Sbjct: 540 LMDGYCLVGKMEKALRVFDAMVSAGIEPNDVVYGTLVNGYCKIGRIDEGLSLFREM-LQK 598
Query: 237 GLMPRQGMV-IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G+ P + I + A R + V+ E E G + Y +V+ G + R
Sbjct: 599 GIKPSTILYNIIIDGLFEAGRTVPAKVKFHEMTE-SGIAMNKCTYSIVLRGLFKNR 653
Score = 38.5 bits (88), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 1/90 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + + EM+ PD T N L+ SLC ++ EA V M+ PD+ SY+
Sbjct: 304 QWKEAVRVFKEMRRQSILPDVVTFNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYN 363
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
I++ +T D ++ +++L G+ P
Sbjct: 364 IMLNGYATKGCLVDMTDLF-DLMLGDGIAP 392
>gi|302759537|ref|XP_002963191.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
gi|300168459|gb|EFJ35062.1| hypothetical protein SELMODRAFT_80491 [Selaginella moellendorffii]
Length = 628
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 4/166 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK+ G PD T N L+ LC ++ EA L M +A+C PD+ SY+I+I A+ + +
Sbjct: 435 MKARGSTPDLVTYNTLLDGLCKAGRIDEAITFLAKMVAAKCTPDVFSYTIIITALCRSGQ 494
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
A + +EMV G++P + + L N A+E+ L+ C F ++
Sbjct: 495 AAGAHAIFQEMV-KRGVLPDTVLYHSLLDGLARNGLEDLALEL---LKTSLCKPDFVMHK 550
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V++G + + A + V M + GF VV GL +G+
Sbjct: 551 MVLDGLCKAGKAEDACEVVERMADAGFPADAFTYISVVSGLRKLGK 596
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ GY PD T + ++ LC +L +A ++L + + ++ +YS+VI A
Sbjct: 63 QMQRRGYPPDDFTYSIVLRGLCKAGELDKAKELLGQLRESGVKLNVITYSVVIDGCCKAS 122
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DA+E+ K M G +P + L + M +A + E++ + GC Y
Sbjct: 123 RVDDALEIFKTMSSGGGCVPDVVTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISY 182
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++G + A + M E+ +P + V GL
Sbjct: 183 STLLDGLCKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGL 224
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 64/269 (23%), Positives = 119/269 (44%), Gaps = 28/269 (10%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIA--YDYLLSYTLQSLHPLPLALAILQR--TLRSGCVP 133
R ++DE ++F + R+ P A ++ L+ +S LP + + QR +++ P
Sbjct: 278 RSGMLDEACKTFEEMISRNHPPSAELFNTLIHAVCKS-KRLPDGVLLFQRMKSMKEFYCP 336
Query: 134 VPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P + + ++ C+++ + +++ EM + G PD T + LV LC + +L A
Sbjct: 337 -PNLETY--NIMVDNLCKAKQLDEAQELVNEMANYGLSPDVVTYSALVDGLCKLGKLDRA 393
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA---VEMMKEMVLNMGLMPRQGMVIK 247
+L+ MS PD + + ++ A+S A K + A +E MK L+ ++
Sbjct: 394 CDLLEEMSKEGVFPDSFTDASILNALSKAGKVDYALSHLETMKARGSTPDLVTYNTLLDG 453
Query: 248 VAAALRANREMWKAVEMIEFLER---KGCPIGFQGYEVVVEGCLECREYILAGKTVM--G 302
+ A R + E I FL + C Y +++ CR AG +
Sbjct: 454 LCKAGRID-------EAITFLAKMVAAKCTPDVFSYTIIITAL--CRSGQAAGAHAIFQE 504
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M +RG +P + +++GLA G LA
Sbjct: 505 MVKRGVLPDTVLYHSLLDGLARNGLEDLA 533
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 66/151 (43%), Gaps = 5/151 (3%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQ--SVADILLE-MKSIGYHPDCGTCNYLVSSL 181
+T+ SG VP + + ++ L+ C + S A +L E M G P+ + + L+ L
Sbjct: 132 KTMSSGGGCVPDV--VTFNSLLKGLCSGERMSEAFVLFEYMAKAGCEPNVISYSTLLDGL 189
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L EA ++ + M CVPDL +Y+ + + A + +A + ++MV
Sbjct: 190 CKAGRLDEACRLWEEMVEKSCVPDLVAYTSFVTGLCKANRVAEACDCCRKMVTKGSKADA 249
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +MIE L R G
Sbjct: 250 VAFSTVIGILCKKGHAEEAQNQMIEHLCRSG 280
>gi|255579531|ref|XP_002530608.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529856|gb|EEF31788.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 596
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 85/194 (43%), Gaps = 7/194 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A+ +L + GC P + L L+ C++ SV A L E + + P
Sbjct: 195 AIEVLDEMPKYGCEPDEYVFGCL----LDALCKNGSVKQAASLFEDMRVRFSPSLRHFTS 250
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C +L+EA VL M A PD+ ++ ++ A S A K DA +++KEMV
Sbjct: 251 LLYGWCREGKLIEAKHVLVQMREAGFEPDIVVFNNLLSAYSMAGKMTDAFDLLKEMV-RK 309
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + A + +M +A+ + +ER GC Y ++ G + +
Sbjct: 310 GCEPNANSYTIMIQAFCSQEKMDEAMRVFVEMERTGCEADVVTYTALISGFCKWGKINRG 369
Query: 297 GKTVMGMTERGFIP 310
+ + M ++G +P
Sbjct: 370 YQILDAMKQKGHMP 383
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 80/182 (43%), Gaps = 3/182 (1%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ +G PD N ++ C + ++ + ++ M +++ P+L+++ I+I
Sbjct: 411 MRMVGCVPDLSIYNVVIRLACKLGEVKQGVQIWNEMEASDFSPELDTFVIMIHGFLGQGC 470
Query: 222 TNDAVEMMKEMVLNMGLM--PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+A E KEM+ GL+ P+ G++ ++ AL ++ A ++ + KGC +
Sbjct: 471 LVEACEYFKEMI-GRGLLTTPQYGILKELLNALLRGEKLGMAKDVWSCIVTKGCELNADA 529
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
+ + + A + M E +P + K++ GL + + A + ++
Sbjct: 530 WTIWIHSLFSNGHVKEACSYCLDMMEADIMPKPETFAKLMRGLRKLYNREFAAEITEKIK 589
Query: 340 EL 341
+
Sbjct: 590 DF 591
>gi|225430498|ref|XP_002283327.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31850,
chloroplastic [Vitis vinifera]
gi|296082142|emb|CBI21147.3| unnamed protein product [Vitis vinifera]
Length = 1113
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/114 (31%), Positives = 60/114 (52%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + +R + G P + L A +RR ++V +L EM+S+G P+ T +
Sbjct: 211 ALKVYRRMVSEGIKPSLKTYSALMVALGKRR-DIETVMGLLQEMESLGLRPNIYTFTICI 269
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L ++ EA +LK M A C PD+ +Y+++I A+ A K N+A E+ +M
Sbjct: 270 RILGRAGKIDEAYGILKRMDDAGCGPDVVTYTVLIDALCNAGKLNNAKELFLKM 323
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 56/248 (22%), Positives = 101/248 (40%), Gaps = 7/248 (2%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLL--SYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ +DE LE F + AY Y+L Y +S A+ ++ +G VP
Sbjct: 414 RLNRLDEALELFNSMESLGLETTAYTYILFIDYYGKSGES-GKAIKTFEKMKTNGIVP-- 470
Query: 136 QIRLLLSSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
I +S + L + + + + +K G PD T N L+ ++ +A K+L
Sbjct: 471 NIVACNASLYSLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLL 530
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C P++ + +I + A + ++A +M + M M L P + A L
Sbjct: 531 SEMEENGCDPEVVIINSLIDTLYKADRVDEAWKMFQRMK-EMKLAPTVVTYNTLLAGLGK 589
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A + + + CP + +++ + E LA K + MTE P +
Sbjct: 590 EGRVQEATALFKGMIADDCPPNTISFNTLLDCLCKNGEVDLALKMLFRMTEMNCFPDVLT 649
Query: 315 RQKVVEGL 322
V+ GL
Sbjct: 650 YNTVIYGL 657
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 56/120 (46%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ + EM++ GY PD T L+ +LC + ++ EA L M P+L +Y+ +
Sbjct: 349 DAIKEFWSEMEADGYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTL 408
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + + ++A+E+ M ++GL I + E KA++ E ++ G
Sbjct: 409 ICGLLRLNRLDEALELFNSME-SLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNG 467
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 55/267 (20%), Positives = 105/267 (39%), Gaps = 6/267 (2%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
++I A+ + L N + L+ + T + D D I E E
Sbjct: 302 VLIDALCNAGKLNNAKELFLKMKASSHKPDRVTYITLLDKFSDHGDLDAIKEFWSEMEAD 361
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLA 119
P+ +F ++ +DE + ++ + P + L L L+ L A
Sbjct: 362 GYLPDVVTFTILIDALCKVGKVDEAFGTLDVMKKQGVAPNLHTYNTLICGLLRLNRLDEA 421
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L + ++ S + +L + + +S +MK+ G P+ CN +
Sbjct: 422 LELFN-SMESLGLETTAYTYILFIDYYGKSGESGKAIKTFEKMKTNGIVPNIVACNASLY 480
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
SL +L EA + G+ PD +Y+I++ A + +DA++++ EM N G
Sbjct: 481 SLAEQGRLEEAKEFFNGLKKCGLAPDAITYNILMRCYGKAGRVDDAIKLLSEMEEN-GCD 539
Query: 240 PRQGMVIKVAAAL-RANR--EMWKAVE 263
P ++ + L +A+R E WK +
Sbjct: 540 PEVVIINSLIDTLYKADRVDEAWKMFQ 566
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/178 (21%), Positives = 77/178 (43%), Gaps = 4/178 (2%)
Query: 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L L L A + L GC+P P +L++ ++ ++ ++ M G
Sbjct: 903 LLKLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNG--FGKQGDVETACELFRRMVKEGIR 960
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD + + +V LC + ++ +A + + + PDL Y+++I + +++ +A+ +
Sbjct: 961 PDLKSYSIMVDCLCMVGKVDDALHYFEELKLSGLDPDLVCYNLMINGLGRSQRVEEALSL 1020
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
EM N G+ P + L + +A +M E L+ KG Y ++ G
Sbjct: 1021 FDEM-RNRGITPDLYTYNALILNLGIAGMVEEAGKMYEELQLKGLEPNVFTYNALIRG 1077
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 7/214 (3%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFS---FLSNFPQNHRIKVIDEML 86
SL + + A+ + L + A P+ F+ FL ++ +IK + ++
Sbjct: 787 SLEAYNSLIDGLLKARLTEMAWGLFYKMKNAGCTPDVFTYNLFLDALGKSGKIKELFDLY 846
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
E L +P ++ + L + L A+ + + P P L L
Sbjct: 847 EEM--LFRGCKPNTITHNIVIFGLVKSNSLDKAIDLYYDLMSGDFSPTPWTYGPLIDGLL 904
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + + EM G P+C N L++ + A ++ + M PDL
Sbjct: 905 -KLGRLEEAKQFFEEMLDYGCMPNCPLYNILMNGFGKQGDVETACELFRRMVKEGIRPDL 963
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+SYSI++ + K +DA+ +E+ L+ GL P
Sbjct: 964 KSYSIMVDCLCMVGKVDDALHYFEELKLS-GLDP 996
>gi|326527465|dbj|BAK08007.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 363
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/106 (34%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDL 206
R + S D+ M S G HP+ GT L+ L A VE AK L GM SAE + P
Sbjct: 259 REGRVTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKNFVE-AKDLVGMMSAESLRPSF 317
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
SY ++I + +DA ++K+MV + G +PR K+ +L
Sbjct: 318 SSYKLLIDGFCSVNCLDDAHHVLKQMV-DQGFVPRMSTWTKLLTSL 362
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/249 (20%), Positives = 98/249 (39%), Gaps = 3/249 (1%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
R ++E+L R R Y + Y + HP A+ L GC P +
Sbjct: 86 RFGDVEELLARARAERFRFSDDFFYRLIKMYGNVANHP-EKAMETLYAMSEYGCWPSTKT 144
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+ + RR Q + V ++ +G D N L+ LC + EA +L M
Sbjct: 145 FNYVLHMLVCRR-QYEVVHEVYSSAPRLGVELDTCCFNILIKGLCQFGRFNEALSLLDEM 203
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+C P+ +YS ++ + + ++A E+ + M I V+ R R
Sbjct: 204 PKQDCRPNAMTYSTLMHFLCRNCRVDEAFELFERMRKEEIDADTVVYNILVSGLCREGR- 262
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A ++ + + +GC Y+V+++G + + ++ A V M+ P +
Sbjct: 263 VTSAYDLFKSMSSQGCHPNSGTYQVLLDGLVASKNFVEAKDLVGMMSAESLRPSFSSYKL 322
Query: 318 VVEGLAGVG 326
+++G V
Sbjct: 323 LIDGFCSVN 331
>gi|255660974|gb|ACU25656.1| pentatricopeptide repeat-containing protein [Verbena litoralis]
Length = 372
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 44/160 (27%), Positives = 77/160 (48%), Gaps = 11/160 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 134 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 189
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR- 291
G M +I + N+ +A +++ L KG G Y ++++G CL+ R
Sbjct: 190 GTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRV 249
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
E L +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 ERALX--LWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 287
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 82/198 (41%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 132 SAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGT 191
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P + +Y+ +I + + +A ++KE+ L+ GL P + L + +
Sbjct: 192 MHCSPTIITYNTLINGLCKNKMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHRVE 250
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + + KG Q + +++ G + LA M P + ++
Sbjct: 251 RALXLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 310
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 311 EGFYKDGDIRNALVIWAR 328
>gi|222622668|gb|EEE56800.1| hypothetical protein OsJ_06387 [Oryza sativa Japonica Group]
Length = 540
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +++ + +M GY P N L+ + ++ K K M C P+
Sbjct: 294 LGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPN 353
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y +I A RK DA++M EM L+ G++P GM+ L A+ +
Sbjct: 354 IDTYRKMIRAFLRERKVADALQMFDEM-LSRGILPSTGMITLFIEPLCTFGPPHAALLIY 412
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGK--TVMG----MTERGFIPYIKVRQKVV 319
+ + GC I + Y++++E + GK TV+ M E G ++ + +V
Sbjct: 413 KRSRKAGCRISMKAYKLLLE------RLAMFGKSGTVLQIWEEMQESGHPSDKEIYEFIV 466
Query: 320 EGLAGVGEWKLATVV 334
GL VG+ A V
Sbjct: 467 NGLCNVGKVDAAVSV 481
>gi|218190552|gb|EEC72979.1| hypothetical protein OsI_06882 [Oryza sativa Indica Group]
Length = 541
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 13/195 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +++ + +M GY P N L+ + ++ K K M C P+
Sbjct: 295 LGRANRAEEALQVFEKMVHEGYCPTTMAYNALIFNFISVGNFDRCIKYYKDMLDNNCPPN 354
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++Y +I A RK DA++M EM L+ G++P GM+ L A+ +
Sbjct: 355 IDTYRKMIRAFLRERKVADALQMFDEM-LSRGILPSTGMITLFIEPLCTFGPPHAALLIY 413
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGK--TVMG----MTERGFIPYIKVRQKVV 319
+ + GC I + Y++++E + GK TV+ M E G ++ + +V
Sbjct: 414 KRSRKAGCRISMKAYKLLLE------RLAMFGKSGTVLQIWEEMQESGHPSDKEIYEFIV 467
Query: 320 EGLAGVGEWKLATVV 334
GL VG+ A V
Sbjct: 468 NGLCNVGKVDAAVSV 482
>gi|449436958|ref|XP_004136259.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
gi|449497032|ref|XP_004160294.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Cucumis sativus]
Length = 504
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 59/270 (21%), Positives = 118/270 (43%), Gaps = 21/270 (7%)
Query: 8 SCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA-CQNPNP 66
+ RS +N RP F+ L V+ D Q E++ + A PN
Sbjct: 179 NARSKLNLRPNTCIFNIL------------VKHHCRNGDLQAAFEVVKEMKSARVSYPNL 226
Query: 67 FSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
++ + +N ++K E E + + Y+ L++ Q + A IL
Sbjct: 227 VTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQR-GKVDRARTIL 285
Query: 124 QRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
+ +GC P V +L++ E R Q ++ E+KS+G PD + L++ LC
Sbjct: 286 EFMKSNGCSPNVFNYSVLMNGYCKEGRLQE--AKEVFNEIKSLGMKPDTISYTTLINCLC 343
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
++ EA ++L+ M +C D ++++++G + + ++A++M++++ G +
Sbjct: 344 RTGRVDEATELLQQMKDKDCRADTVTFNVMLGGLCREGRFDEALDMVQKLPFE-GFYLNK 402
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKG 272
G V L E+ KA E++ + +G
Sbjct: 403 GSYRIVLNFLTQKGELRKATELLGLMLNRG 432
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 62/276 (22%), Positives = 116/276 (42%), Gaps = 15/276 (5%)
Query: 26 RSMSSLRTLEETVRAAVDAKDYQQIPELLGSF-EEACQNPNPFSFLS---NFPQNHRIKV 81
+S SS + E ++ + +D Q ++ E+ N N ++ S N + + +
Sbjct: 42 KSKSSYISHETAIKLIKNERDPQHALDIFNMVSEQQGFNHNHATYASIIQNLAKYKKFQA 101
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
ID +L + I + + ++ S+H L + ++S P ++ +
Sbjct: 102 IDGVLHQMTYDTCKVHEGIFLNLMKHFSKSSMHERVLDMFY---AIKSIVREKPSLKAI- 157
Query: 142 SSAWLERRCQSQSVA---DILLEMKS-IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
S L +S V +L+ +S + P+ N LV C L A +V+K M
Sbjct: 158 -STCLNLLVESDRVDLARKLLVNARSKLNLRPNTCIFNILVKHHCRNGDLQAAFEVVKEM 216
Query: 198 SSAEC-VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
SA P+L +YS +IG + K +A+E +EMV ++P +
Sbjct: 217 KSARVSYPNLVTYSTLIGGLCENGKLKEAIEFFEEMVSKDNILPDALTYNILINGFCQRG 276
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
++ +A ++EF++ GC Y V++ G C E R
Sbjct: 277 KVDRARTILEFMKSNGCSPNVFNYSVLMNGYCKEGR 312
>gi|302755288|ref|XP_002961068.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
gi|300172007|gb|EFJ38607.1| hypothetical protein SELMODRAFT_75649 [Selaginella moellendorffii]
Length = 461
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 85/189 (44%), Gaps = 8/189 (4%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL-KGMSSAECVPDLESY 209
++ ++L +M+S+G D T + ++ SLC +V+ AKVL + M S CVPD Y
Sbjct: 102 RNNDALELLEQMESVGLEADKDTYSLIIHSLCK-SGMVDKAKVLVERMISRNCVPDARIY 160
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
VI +S + ++AVE+ KE ++ +V+ A R + + +++
Sbjct: 161 DPVIEELSKTGRVDEAVEIAKEADAKHCTSVVTYNSLVLGFLKA----RRLKRGIKVFTR 216
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ R G Y ++ EG + A K + M + G +P + ++ GL
Sbjct: 217 MARTGPSPDIYTYNILFEGLSRHGLWRFAYKLLPRMNQDGVLPDVVTFNSLINGLVEDNR 276
Query: 328 WKLATVVRQ 336
+ A + Q
Sbjct: 277 YHRAVTLIQ 285
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 70/161 (43%), Gaps = 3/161 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ ++Q + GC P I + WL R ++ ++ + P+ T N ++
Sbjct: 280 AVTLIQEMVSRGCDP-NAITYTILLKWLARNARTDECVELFQRLLDRKLAPNVYTYNTVM 338
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
S+LC +L +A ++ M +++C P+ +Y +I + + AV ++ M G
Sbjct: 339 SALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKMELERAVLLLDAMA-KRG 397
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
P + AA + +A E++E + G + F+
Sbjct: 398 CAPDVACYGTIVAAFCKQGRIDEAFELLERMPFAGDKVMFR 438
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 50/216 (23%), Positives = 89/216 (41%), Gaps = 11/216 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQI---RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L + + R R+G P P I +L L R + +L M G PD
Sbjct: 207 LKRGIKVFTRMARTG--PSPDIYTYNILFEG--LSRHGLWRFAYKLLPRMNQDGVLPDVV 262
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ L ++ A +++ M S C P+ +Y+I++ ++ +T++ VE+ + +
Sbjct: 263 TFNSLINGLVEDNRYHRAVTLIQEMVSRGCDPNAITYTILLKWLARNARTDECVELFQRL 322
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEG-CLEC 290
L+ L P V +AL + +A + + C P Y ++ G CL+
Sbjct: 323 -LDRKLAPNVYTYNTVMSALCKAGRLDQAHRLFGVMLASDCTPPNAITYRALIHGLCLKM 381
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
E A + M +RG P + +V G
Sbjct: 382 -ELERAVLLLDAMAKRGCAPDVACYGTIVAAFCKQG 416
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 85/215 (39%), Gaps = 38/215 (17%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK-GMSSAECVPDLESYSI 211
++ ++L +M G N + LC + A + L+ +S + +YSI
Sbjct: 33 RATIELLKDMAENGSTLSIQDLNGCLRGLCKAGNVDGALEFLREAKNSFSLRASVSTYSI 92
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGL-------------MPRQGMVIK----------- 247
++ A++ A++ NDA+E++++M ++GL + + GMV K
Sbjct: 93 LVAALTAAKRNNDALELLEQME-SVGLEADKDTYSLIIHSLCKSGMVDKAKVLVERMISR 151
Query: 248 -----------VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
V L + +AVE+ + + K C Y +V G L+ R
Sbjct: 152 NCVPDARIYDPVIEELSKTGRVDEAVEIAKEADAKHCT-SVVTYNSLVLGFLKARRLKRG 210
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
K M G P I + EGL+ G W+ A
Sbjct: 211 IKVFTRMARTGPSPDIYTYNILFEGLSRHGLWRFA 245
>gi|302773712|ref|XP_002970273.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
gi|300161789|gb|EFJ28403.1| hypothetical protein SELMODRAFT_411148 [Selaginella moellendorffii]
Length = 831
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 81/180 (45%), Gaps = 17/180 (9%)
Query: 65 NPFSFLSNFPQNHRIKVIDEMLESFIP--LRPRSRPKIAYDYLLSYTLQSLHPLPLALAI 122
+ FS Q H E+ E+ I RP + + Y+ LL + P A +
Sbjct: 560 HGFSLARKHDQAH------ELFETMISRGCRPNA---VTYNCLLHGLCKESKP-DEAHEL 609
Query: 123 LQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++ + GC P V LL + + Q+ V D EM S G+ PD N L+
Sbjct: 610 FRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEVFD---EMVSKGHDPDVVAYNCLLKG 666
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+ EA ++ + M S +C PD S++I+I +S A++ +DAVE+ + M + G P
Sbjct: 667 FFRAGKPGEAKQLFQVMVSRQCKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSP 726
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD + + L+ C ID+L A K+ K M CVP++ +Y+ + + + DA +
Sbjct: 480 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 539
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+EMV G P + R+ +A E+ E + +GC Y ++ G
Sbjct: 540 YEEMVA-AGCSPDVITYSTLIHGFSLARKHDQAHELFETMISRGCRPNAVTYNCLLHGLC 598
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + A + M ERG P ++ G VG+ + A V
Sbjct: 599 KESKPDEAHELFRKMVERGCDPDRVTYTTLLYGFCNVGKIEQAVEV 644
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/162 (24%), Positives = 75/162 (46%), Gaps = 14/162 (8%)
Query: 78 RIKVIDEMLESFIPLRPRSRP---KIAYDYLLSYTLQS--LHPLPLALAILQRTLRSGCV 132
+++ +DE + F+ + S+ +A+ LS +S + A +Q +L S
Sbjct: 281 KLENLDEAFKLFLEMAVESKAPLNNVAWTAFLSGLCKSGKIEQAFEACRTMQESLSSS-Q 339
Query: 133 PVPQ--IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
PV IRLL+ S +++ + LE+ P GTC+ ++ LC ++ A
Sbjct: 340 PVYDMLIRLLIESGRIDK------AEEACLEIAGRNIQPSSGTCHSVIQELCKAGRVDSA 393
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+L+ M PD+ ++S++I + A K +A E ++ M
Sbjct: 394 LSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGM 435
>gi|255660996|gb|ACU25667.1| pentatricopeptide repeat-containing protein [Junellia uniflora]
Length = 376
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L +A VL GM + C P+ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDKAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VGE +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGEMQLA 288
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + G + +++ L + +L M G
Sbjct: 108 GYINKSLHVLEMA------EQKGGVLDAFAYSAMING--LCKEANLDKAVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +V + M + C P + +Y+ +I + +A
Sbjct: 160 CKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ +A+++ + KG Q + +++ G
Sbjct: 220 NLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVQMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
E LA M P + ++EG G+ + A V+ R
Sbjct: 279 LCSVGEMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|30840221|emb|CAD61285.1| fertility restorer [Raphanus sativus]
gi|32452380|emb|CAD80165.1| restorer of fertility pentatricopeptide repeat [Raphanus sativus]
gi|32527602|gb|AAP86198.1| pentatricopeptide repeat-containing protein [Raphanus sativus]
gi|90903522|gb|ABE02309.1| Rf [Raphanus sativus]
gi|90903524|gb|ABE02310.1| Rf [Raphanus sativus]
gi|157931524|gb|ABW04886.1| PPR [Raphanus sativus]
Length = 687
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 21/285 (7%)
Query: 57 FEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
FE C+ PN +F ++ + RI ++D M+E L+P +I Y ++
Sbjct: 176 FETTCR-PNVVTFTTLMNGLCREGRIVEAVALLDRMMED--GLQP---TQITYGTIVDGM 229
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIG 166
+ + AL +L++ + +P + ++ SA ++ C+ +D + EM+ G
Sbjct: 230 CKKGDTVS-ALNLLRKMEEVSHI-IPNV--VIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++ C+ + +A ++L+ M + PD+ +Y+ +I A K +A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E+ EM L G++P + + A M + KGC + +++G
Sbjct: 346 ELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + + MTE G + ++ G VG+ A
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T L+ LC D++ E
Sbjct: 109 -QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A+ ++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P L+ + ++ C ++ + D +L EM G D T N L+ +
Sbjct: 390 GCSP----NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A +L+ M S+ PD+ + ++ + K DA+EM K M
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ------------- 492
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+ G Q Y +++ G + +++ A + M R
Sbjct: 493 KSKKDLDASHPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 307 GFIPYIKVRQKVVEGL 322
G +P +++GL
Sbjct: 541 GIVPDTITYSSMIDGL 556
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---------- 165
L AL +LQ + SG P ++ L+ C + + D L K +
Sbjct: 446 LNAALDLLQEMISSGLCP----DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501
Query: 166 ----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
G PD T N L+S L + +EA ++ + M VPD +YS +I + +
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561
Query: 222 TNDAVEMMKEM 232
++A +M M
Sbjct: 562 LDEATQMFDSM 572
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T + ++ LC +L EA ++ M S P++ +++ +I A
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 596 RVDDGLELFCEM 607
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 3/218 (1%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S LP AL+ + + G P V LL +E R D +M P+
Sbjct: 126 SCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE--ALDFFHQMFETTCRPN 183
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T L++ LC ++VEA +L M P +Y ++ M T A+ +++
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+M ++P + + +L + A + ++ KG Y ++ G
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSS 303
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ A + + M ER P + ++ G++
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
>gi|449469180|ref|XP_004152299.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
gi|449484825|ref|XP_004156991.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Cucumis sativus]
Length = 579
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/191 (26%), Positives = 86/191 (45%), Gaps = 15/191 (7%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V +D+ M S G P NY++ LC + L A +V M+ C PD
Sbjct: 386 CEHRHVDEASDLFGRMLSQGMKPKLAIYNYVICMLCKLGNLDSAERVFGIMNKKRCAPDH 445
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +I A R + A ++KEM L++G+ P + V +R + + +++
Sbjct: 446 VTYSALIHAYGENRDWSAAYGLLKEM-LSLGMSPHFHVYSIVDKLMREHGQ----IDLCL 500
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
LE K Q ++ +G LE A + + M E+G P I VR G
Sbjct: 501 KLEMKWEAQILQ--KLCKQGQLEA-----AYEKMKSMLEKGLSPPIYVRDAFESAFQKKG 553
Query: 327 EWKLATVVRQR 337
++K+A + Q+
Sbjct: 554 KFKIARELLQK 564
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 61/138 (44%), Gaps = 1/138 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+S LC + Q+ EA +VLK + + E YS+V+ A+ R ++A ++ M L+
Sbjct: 346 LISELCRLGQMQEAIRVLKVVEGDKLRCAEECYSVVMKALCEHRHVDEASDLFGRM-LSQ 404
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+ P+ + V L + A + + +K C Y ++ E R++ A
Sbjct: 405 GMKPKLAIYNYVICMLCKLGNLDSAERVFGIMNKKRCAPDHVTYSALIHAYGENRDWSAA 464
Query: 297 GKTVMGMTERGFIPYIKV 314
+ M G P+ V
Sbjct: 465 YGLLKEMLSLGMSPHFHV 482
>gi|37572999|dbj|BAC98691.1| putative fertility restorer homologue [Oryza sativa Japonica Group]
gi|222640519|gb|EEE68651.1| hypothetical protein OsJ_27230 [Oryza sativa Japonica Group]
Length = 691
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
+P A+AIL +P Q+ + A++E Q+ IL+E MKS G P T
Sbjct: 496 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF--ILVEKMKSNGISPSIVTY 553
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ LC Q+ EA +++ +S+ +PD SY+ +I A + A+++ + M
Sbjct: 554 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 611
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 103 DYLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
DY S L L + +A +LQ + +G VP I L + + CQ+ +
Sbjct: 340 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY----CQTGELEGAF 395
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+MKS PD T N L++ LC +++ A +L M P +E+++ +I A
Sbjct: 396 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 455
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++ EM N GL P + A N ++ +AV +++ + K
Sbjct: 456 GRTGQLEKCFIVLSEMQEN-GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 514
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Q Y +++ +E A V M G P I +++GL
Sbjct: 515 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 560
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A + C+++ + D+L+EM+ G +P T N L+ + QL + VL M
Sbjct: 414 NALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE 473
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P++ SY ++ A K +AV ++ +M + ++P + + A +
Sbjct: 474 NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPND 532
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A ++E ++ G Y ++++G + A + + ++ IP
Sbjct: 533 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 583
>gi|449511130|ref|XP_004163870.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g09900-like [Cucumis sativus]
Length = 847
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/175 (24%), Positives = 81/175 (46%), Gaps = 4/175 (2%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
IG P+ T N L+ C + Q+ +A +++ M S C PD SY V+G + ++ N+
Sbjct: 345 IGIAPNVVTYNCLIKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNE 404
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
E++K+M + L+P + L + +A+E+++ E+ + Y +V
Sbjct: 405 IRELIKKMQTDSKLLPDHVTYNSLIQMLSKHGHGDEALEILQEAEKLRFKVDKVEYSAIV 464
Query: 285 EGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
C+E + A + V M +G P + V++G +G+ A + Q+
Sbjct: 465 HA--YCKEGKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQ 517
Score = 41.2 bits (95), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 59/292 (20%), Positives = 115/292 (39%), Gaps = 51/292 (17%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR 97
++ + Q EL+ +P+ S+ + R K ++E+ E ++ S+
Sbjct: 358 IKGYCNVHQVDQAMELIDQMPSKGCSPDKVSYYTVMGLLCRDKRLNEIRELIKKMQTDSK 417
Query: 98 ---PKIAYDYLLSYTLQSLHPLPLALAILQRT--LRSGCVPVPQIRLLLSSAWLERRCQS 152
+ Y+ L+ + H AL ILQ LR V ++ SA + C+
Sbjct: 418 LLPDHVTYNSLIQMLSKHGHG-DEALEILQEAEKLR---FKVDKVEY---SAIVHAYCKE 470
Query: 153 ---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD---- 205
Q +++ EM S G PD T ++ C I +L +A K+++ M C P+
Sbjct: 471 GKIQKAKELVSEMFSKGCDPDVVTYTSVLDGFCRIGKLDQAKKMMQQMYKHHCKPNAVTY 530
Query: 206 -------------LE------------------SYSIVIGAMSTARKTNDAVEMMKEMVL 234
LE +YS+V+ + K N+A ++++EM+
Sbjct: 531 TTFLNGLCRNGKSLEARKMMNMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMI- 589
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G P + + +L + + +A ++++ KGC + + V+ G
Sbjct: 590 GKGFFPNPVEINLLVHSLCRDGKPREANQLLKECMNKGCAVNVVNFTTVIHG 641
Score = 38.1 bits (87), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 37/165 (22%), Positives = 67/165 (40%), Gaps = 1/165 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + +IL E + + + D + +V + C ++ +A +++ M S C PD
Sbjct: 432 LSKHGHGDEALEILQEAEKLRFKVDKVEYSAIVHAYCKEGKIQKAKELVSEMFSKGCDPD 491
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ V+ K + A +MM++M + P L N + +A +M+
Sbjct: 492 VVTYTSVLDGFCRIGKLDQAKKMMQQMYKHH-CKPNAVTYTTFLNGLCRNGKSLEARKMM 550
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E + Y VVV G + A V M +GF P
Sbjct: 551 NMSEEEWWTPNAITYSVVVHGLRREGKLNEACDVVREMIGKGFFP 595
>gi|414591615|tpg|DAA42186.1| TPA: hypothetical protein ZEAMMB73_716348 [Zea mays]
Length = 325
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 89/222 (40%), Gaps = 46/222 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ L+ C+++ DILL +G P
Sbjct: 125 HRPELALAFFGQLLRTGL----RVNIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 180
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C PD+ +YS VI N A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYSTVIDGFFKEGDVNKACD 240
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P F Y VV
Sbjct: 241 LFKEMV------------------------------------QRGIPPDFVTYSSVVHAL 264
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ R A + M +G +P ++ G + G+WK
Sbjct: 265 CKARAMDKAEAFLRQMVNKGVLPNNWTYNNLIYGYSSTGQWK 306
>gi|152717466|dbj|BAF73724.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 21/285 (7%)
Query: 57 FEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
FE C+ PN +F ++ + RI ++D M+E L+P +I Y ++
Sbjct: 176 FETTCR-PNVVTFTTLMNGLCREGRIVEAVALLDRMMED--GLQP---TQITYGTIVDGM 229
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIG 166
+ + AL +L++ + +P + ++ SA ++ C+ +D + EM+ G
Sbjct: 230 CKKGDTVS-ALNLLRKMEEVSHI-IPNV--VIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++ C+ + +A ++L+ M + PD+ +Y+ +I A K +A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E+ EM L G++P + + A M + KGC + +++G
Sbjct: 346 ELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + + MTE G + ++ G VG+ A
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T N L+ LC D++ E
Sbjct: 109 -QIRCDIYSFTILIKCFCSCSKLPFALSTFGKLTKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A + M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A+ ++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P L+ + ++ C ++ + D +L EM G D T N L+ +
Sbjct: 390 GCSP----NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A +L+ M S+ PD+ + ++ + K DA+EM K M
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ------------- 492
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+ G Q Y +++ G + +++ A + M R
Sbjct: 493 KSKKDLDASHPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 307 GFIPYIKVRQKVVEGL 322
G +P +++GL
Sbjct: 541 GIVPDTITYSSMIDGL 556
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
+ ++++ EM E+ + + + + + L L + AL +LQ + SG P
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA------ALDLLQEMISSGLCP-- 463
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSI--------------GYHPDCGTCNYLVSSL 181
++ L+ C + + D L K + G PD T N L+S L
Sbjct: 464 --DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ +EA ++ + M VPD +YS +I + + ++A +M M
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T + ++ LC +L EA ++ M S P++ +++ +I A
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 596 RVDDGLELFCEM 607
>gi|152717462|dbj|BAF73723.1| pentatricopeptide repeat protein [Raphanus sativus]
Length = 687
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 84/201 (41%), Gaps = 6/201 (2%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
+P + ++ SA ++ C+ +D + EM+ G PD T N ++ C+ + +A
Sbjct: 252 IPNV--VIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDA 309
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
++L+ M + PD+ +Y+ +I A K +A E+ EM L G++P +
Sbjct: 310 EQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAEELYDEM-LPRGIIPNTITYSSMID 368
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ A M + KGC + +++G + + + MTE G +
Sbjct: 369 GFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVA 428
Query: 311 YIKVRQKVVEGLAGVGEWKLA 331
++ G VG+ A
Sbjct: 429 DTTTYNTLIHGFYLVGDLNAA 449
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 112/274 (40%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T N L+ LC D++ E
Sbjct: 109 -QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A + M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A++++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKIGDTVSALDLLRKMEEISHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P L+ + ++ C ++ + D +L EM G D T N L+ +
Sbjct: 390 GCSP----NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A +L+ M S+ PD+ + ++ + K DA+EM K M
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ------------- 492
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+ G Q Y +++ G + +++ A + M R
Sbjct: 493 KSKKDLDASHPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 307 GFIPYIKVRQKVVEGL 322
G +P +++GL
Sbjct: 541 GIVPDTITYSSMIDGL 556
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 70/171 (40%), Gaps = 24/171 (14%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
+ ++++ EM E+ + + + + + L L + AL +LQ + SG P
Sbjct: 412 DDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNA------ALDLLQEMISSGLCP-- 463
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSI--------------GYHPDCGTCNYLVSSL 181
++ L+ C + + D L K + G PD T N L+S L
Sbjct: 464 --DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDASHPFNGVEPDVQTYNILISGL 521
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ +EA ++ + M VPD +YS +I + + ++A +M M
Sbjct: 522 INEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSM 572
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T + ++ LC +L EA ++ M S P++ +++ +I A
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 596 RVDDGLELFCEM 607
>gi|30840327|emb|CAD61286.1| fertility restorer homologue [Raphanus sativus]
gi|134302843|gb|ABO70665.1| restorer-of-fertility [Raphanus sativus]
gi|157931526|gb|ABW04887.1| PPR [Raphanus sativus]
gi|194295008|gb|ABO70666.2| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 21/285 (7%)
Query: 57 FEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
FE C+ PN +F ++ + RI ++D M+E L+P +I Y ++
Sbjct: 176 FETTCR-PNVVTFTTLMNGLCREGRIVEAVALLDRMMED--GLQP---TQITYGTIVDGM 229
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIG 166
+ + AL +L++ + +P + ++ SA ++ C+ +D + EM+ G
Sbjct: 230 CKKGDTVS-ALNLLRKMEEVSHI-IPNV--VIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++ C+ + +A ++L+ M + PD+ +Y+ +I A K +A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E+ EM L G++P + + A M + KGC + +++G
Sbjct: 346 ELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + + MTE G + ++ G VG+ A
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 56/274 (20%), Positives = 111/274 (40%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T N L+ LC D++ E
Sbjct: 109 -QIRCDIYSFTILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFNTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A + M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A+ ++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P L+ + ++ C ++ + D +L EM G D T N L+ +
Sbjct: 390 GCSP----NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A +L+ M S+ PD+ + ++ + K DA+EM K M
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ------------- 492
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+ G Q Y +++ G + +++ A + M R
Sbjct: 493 KSKKDLDASHPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 307 GFIPYIKVRQKVVEGL 322
G +P +++GL
Sbjct: 541 GIVPDTITYSSMIDGL 556
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---------- 165
L AL +LQ + SG P ++ L+ C + + D L K +
Sbjct: 446 LNAALDLLQEMISSGLCP----DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501
Query: 166 ----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
G PD T N L+S L + +EA ++ + M VPD +YS +I + +
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561
Query: 222 TNDAVEMMKEM 232
++A +M M
Sbjct: 562 LDEATQMFDSM 572
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T + ++ LC +L EA ++ M S P++ +++ +I A
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 596 RVDDGLELFCEM 607
>gi|134302847|gb|ABO70667.1| restorer-of-fertility [Raphanus sativus]
Length = 687
Score = 55.5 bits (132), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/285 (21%), Positives = 120/285 (42%), Gaps = 21/285 (7%)
Query: 57 FEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
FE C+ PN +F ++ + RI ++D M+E L+P +I Y ++
Sbjct: 176 FETTCR-PNVVTFTTLMNGLCREGRIVEAVALLDRMMED--GLQP---TQITYGTIVDGM 229
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIG 166
+ + AL +L++ + +P + ++ SA ++ C+ +D + EM+ G
Sbjct: 230 CKKGDTVS-ALNLLRKMEEVSHI-IPNV--VIYSAIIDSLCKDGRHSDAQNLFTEMQEKG 285
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++ C+ + +A ++L+ M + PD+ +Y+ +I A K +A
Sbjct: 286 IFPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKFFEAE 345
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
E+ EM L G++P + + A M + KGC + +++G
Sbjct: 346 ELYDEM-LPRGIIPNTITYSSMIDGFCKQNRLDAAEHMFYLMATKGCSPNLITFNTLIDG 404
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + + MTE G + ++ G VG+ A
Sbjct: 405 YCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGDLNAA 449
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 110/274 (40%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T L+ LC D++ E
Sbjct: 109 -QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A + M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALNLFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A+ ++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 74/196 (37%), Gaps = 32/196 (16%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P L+ + ++ C ++ + D +L EM G D T N L+ +
Sbjct: 390 GCSP----NLITFNTLIDGYCGAKRIDDGMELLHEMTETGLVADTTTYNTLIHGFYLVGD 445
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A +L+ M S+ PD+ + ++ + K DA+EM K M
Sbjct: 446 LNAALDLLQEMISSGLCPDIVTCDTLLDGLCDNGKLKDALEMFKVMQ------------- 492
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
K L A+ G Q Y +++ G + +++ A + M R
Sbjct: 493 KSKKDLDASHPF------------NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHR 540
Query: 307 GFIPYIKVRQKVVEGL 322
G +P +++GL
Sbjct: 541 GIVPDTITYSSMIDGL 556
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 54/131 (41%), Gaps = 18/131 (13%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---------- 165
L AL +LQ + SG P ++ L+ C + + D L K +
Sbjct: 446 LNAALDLLQEMISSGLCP----DIVTCDTLLDGLCDNGKLKDALEMFKVMQKSKKDLDAS 501
Query: 166 ----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
G PD T N L+S L + +EA ++ + M VPD +YS +I + +
Sbjct: 502 HPFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSR 561
Query: 222 TNDAVEMMKEM 232
++A +M M
Sbjct: 562 LDEATQMFDSM 572
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T + ++ LC +L EA ++ M S P++ +++ +I A
Sbjct: 536 EMPHRGIVPDTITYSSMIDGLCKQSRLDEATQMFDSMGSKSFSPNVVTFTTLINGYCKAG 595
Query: 221 KTNDAVEMMKEM 232
+ +D +E+ EM
Sbjct: 596 RVDDGLELFCEM 607
>gi|449447209|ref|XP_004141361.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
gi|449498723|ref|XP_004160616.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Cucumis sativus]
Length = 494
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 80/183 (43%), Gaps = 1/183 (0%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L EM+ +G PD G NYL+SSLC D+ EA +L+ M C P+ ++ I+I +
Sbjct: 304 LDEMRQVGCIPDAGILNYLLSSLCKNDKFGEAHNLLEEMLEQNCSPNSLTFEIIICHLCK 363
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A+ + MV GLMPR + +++ +A + K
Sbjct: 364 IGNIESALGYLDMMVAG-GLMPRLSTHAAFVKSYFSSQRYEEAYQYAVDSSLKYVTTQNA 422
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
Y ++ + + A K + + + G P+ V ++++ L G LA ++++
Sbjct: 423 TYSLLATLHEKRGNLVDAQKILSELMDAGLKPHFHVYTRLLKKLQVQGRGDLANDLKRKI 482
Query: 339 AEL 341
+ +
Sbjct: 483 SNV 485
>gi|356524104|ref|XP_003530672.1| PREDICTED: pentatricopeptide repeat-containing protein At1g05670,
mitochondrial-like [Glycine max]
Length = 742
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 91/223 (40%), Gaps = 39/223 (17%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ CQ + + +L E++ G P+ T N ++S LC ++VEA +VL+ M +
Sbjct: 291 SVIVDGYCQVEQLGKVLKLMEELQRKGLKPNQYTYNSIISFLCKTGRVVEAEQVLRVMKN 350
Query: 200 -----------------------------------AECVPDLESYSIVIGAMSTARKTND 224
+ VPD +Y+ +I + A K +
Sbjct: 351 QRIFPDNVVYTTLISGFGKSGNVSVEYKLFDEMKRKKIVPDFVTYTSMIHGLCQAGKVVE 410
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A ++ EM L+ GL P + + EM +A + + KG Y +V
Sbjct: 411 ARKLFSEM-LSKGLKPDEVTYTALIDGYCKAGEMKEAFSLHNQMVEKGLTPNVVTYTALV 469
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+G +C E +A + + M+E+G P + ++ GL VG
Sbjct: 470 DGLCKCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGN 512
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 49/93 (52%), Gaps = 2/93 (2%)
Query: 149 RCQSQSVADILL-EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+C +A+ LL EM G P+ T N L++ LC + + +A K+++ M A PD
Sbjct: 474 KCGEVDIANELLHEMSEKGLQPNVCTYNALINGLCKVGNIEQAVKLMEEMDLAGFFPDTI 533
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y+ ++ A + A E+++ M L+ GL P
Sbjct: 534 TYTTIMDAYCKMGEMAKAHELLRIM-LDKGLQP 565
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 66/167 (39%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMK PD T ++ LC ++VEA K+ M S PD +Y+ +I A
Sbjct: 382 EMKRKKIVPDFVTYTSMIHGLCQAGKVVEARKLFSEMLSKGLKPDEVTYTALIDGYCKAG 441
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A + +MV GL P + L E+ A E++ + KG Y
Sbjct: 442 EMKEAFSLHNQMV-EKGLTPNVVTYTALVDGLCKCGEVDIANELLHEMSEKGLQPNVCTY 500
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G + A K + M GF P +++ +GE
Sbjct: 501 NALINGLCKVGNIEQAVKLMEEMDLAGFFPDTITYTTIMDAYCKMGE 547
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L+ C + + ++ KGM + VPD +Y+I+I AR +A
Sbjct: 597 GIMPNATTFNSLMKQYCIRNNMRATIEIYKGMHAQGVVPDTNTYNILIKGHCKARNMKEA 656
Query: 226 VEMMKEMV 233
+ KEMV
Sbjct: 657 WFLHKEMV 664
>gi|297830278|ref|XP_002883021.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
gi|297328861|gb|EFH59280.1| hypothetical protein ARALYDRAFT_479138 [Arabidopsis lyrata subsp.
lyrata]
Length = 504
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/223 (24%), Positives = 91/223 (40%), Gaps = 12/223 (5%)
Query: 111 QSLHPLPL--ALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKS 164
LH L AL + R + S P+P I RLL A ++R V + +M+
Sbjct: 56 NGLHNLQFNEALDLFTRMVHSR--PLPSIVDFTRLLSVIAKMKR---FDVVISLFEQMQI 110
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+G P TCN +++ +C Q A+ L M PDL +++ ++ + D
Sbjct: 111 LGISPVLYTCNIVMNCVCRSSQPCRASCFLGKMMKLGFEPDLVTFTSLLHGFCHWNRIED 170
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ + ++V MG P + L NR + AVE+ + G Y +V
Sbjct: 171 ALALFDQIV-GMGFRPNVVTYTTLIHCLCKNRHLNHAVEIFNQMGDNGIRPNVVTYNSLV 229
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G E + A + M +RG P + +++ VG+
Sbjct: 230 SGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGK 272
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 88/213 (41%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+ + + G P L + R + +V +I +M G P+ T N LV
Sbjct: 171 ALALFDQIVGMGFRPNVVTYTTLIHCLCKNRHLNHAV-EIFNQMGDNGIRPNVVTYNSLV 229
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S LC I + +AA +L+ M P++ +++ +I A K +A E+ K M+ M +
Sbjct: 230 SGLCEIGRWSDAAWLLRDMMKRGIQPNVITFTALIDAFVKVGKIMEAKELYKVMI-QMSV 288
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L + +A +M +E G Y ++ G + + K
Sbjct: 289 YPDVFTYTALINGLCTYGRLDEARQMFYLMESNGYYPNEVTYTTLIHGFCKSKRVEDGTK 348
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M+++G + +++G VG +A
Sbjct: 349 IFYEMSQKGLVANTITYTVLIQGYCLVGRPDVA 381
>gi|147768815|emb|CAN62672.1| hypothetical protein VITISV_031896 [Vitis vinifera]
Length = 530
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 6/232 (2%)
Query: 113 LHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
+ L AL+ R L P V +LL S A ++ +V + +M S G PD
Sbjct: 90 FNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMK---HYSTVLSLSTQMDSFGIPPD 146
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N L++S C + +L A VL + C PD +++ +I + K +A+ +
Sbjct: 147 VYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFD 206
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+ + G P + L A+ ++ + +K C Y +++ +
Sbjct: 207 KTI-GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 265
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
R+ A M +G P I ++ L + EWK T + K
Sbjct: 266 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 317
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 16/231 (6%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L L A ++L + L+ GC P + + C + +
Sbjct: 145 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTT----FNTLIRGLCVEGKIGE 200
Query: 158 IL-LEMKSIG--YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L L K+IG + PD T L++ LC + A ++L+ M C P++ +Y+ +I
Sbjct: 201 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIID 260
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKG 272
++ R+ +A + EM+ G+ P + AL N WK V + E + K
Sbjct: 261 SLCKDRQVTEAFNLFSEMITK-GISPDIFTYNSLIHAL-CNLCEWKHVTTLLNEMVNSKI 318
Query: 273 CPIGFQGYEVVVEGCLECREYI--LAGKTVMGMTERGFIPYIKVRQKVVEG 321
P + VV+ C+E + +A V M +RG P + +++G
Sbjct: 319 MP-NVVVFSTVVDAL--CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDG 366
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 88/209 (42%), Gaps = 11/209 (5%)
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ S ++ C+ +A D++ M G PD T L+ C ++ EA KV
Sbjct: 321 NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVF 380
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M CVP++ SY+I+I ++ + A+ ++++M L GL+ + L
Sbjct: 381 DTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTVTYNTLIHGLCH 439
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYI 312
+ A+ + + G Y ++++ C+ + LA V+ + I
Sbjct: 440 VGRLQHAIALFHEMVASGQIPDLVTYRILLD--YLCKNHHLAEAMVLLKAIEGSNLDADI 497
Query: 313 KVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
V ++G+ GE + A R F+ L
Sbjct: 498 LVYNIAIDGMCRAGELEAA---RDLFSNL 523
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 56/117 (47%), Gaps = 7/117 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSI-GYHPDCGTCN 175
A+ + + GCVP + +L + + CQ Q + A LLE S+ G D T N
Sbjct: 376 AVKVFDTMVHKGCVPNVRSYNILINGY----CQIQRMDKAMGLLEQMSLQGLIADTVTYN 431
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ LC + +L A + M ++ +PDL +Y I++ + +A+ ++K +
Sbjct: 432 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAI 488
>gi|414864980|tpg|DAA43537.1| TPA: hypothetical protein ZEAMMB73_764503 [Zea mays]
Length = 649
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 6/187 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ M PD + N L+ C + ++ EA K K M PD+ S+S +IG
Sbjct: 248 EVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDVVSFSCLIGLF 307
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S + + A ++EM +GL+P + V M +A+ + + + GC
Sbjct: 308 SRRGEMDHAGAYLREMK-GLGLVPDGVIYTMVIGGFCRAGSMSEALRVRDEMVGFGCLPD 366
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA----- 331
Y ++ G + + A K + M ERG P + ++ G G ++ A
Sbjct: 367 VVTYNTLLNGLCKQHRLLDAEKLLNEMEERGVTPDLCTFTTLIHGYCRQGNFENALQLFD 426
Query: 332 TVVRQRF 338
T++RQR
Sbjct: 427 TLLRQRL 433
Score = 39.3 bits (90), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 53/235 (22%), Positives = 92/235 (39%), Gaps = 16/235 (6%)
Query: 84 EMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ------I 137
E++ S + P +P++ +D L+ QS P A R L VPVP +
Sbjct: 73 EIVSSLLASSPTPQPQV-FDLLIRTYTQSRKPREAFEAF--RLLLDHRVPVPASASNALL 129
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L + W +Q ++L S + T N +V S C + A V+ M
Sbjct: 130 AVLSRAGWPH---LAQEAYRLVLSSDS---EVNAYTLNIMVHSYCKTLEFDGADTVISEM 183
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
PD+ +++++I A A + A+ ++ M N GL P V L +R
Sbjct: 184 EKRCVFPDVVTHNVLIDARFRAGDVDAAIALVDSMA-NRGLKPGIVTYNSVLKGLCKHRR 242
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
KA E+ +++ + + +++ G E A K M R P +
Sbjct: 243 FDKAKEVFRTMDQCSVAPDVRSFNILIGGFCRVGEVKEAVKFYKEMQHRYVTPDV 297
>gi|225430658|ref|XP_002268375.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial [Vitis vinifera]
gi|296085168|emb|CBI28663.3| unnamed protein product [Vitis vinifera]
Length = 454
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 105/253 (41%), Gaps = 37/253 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+++R +R G P Q +L + W + + D L EM G++P + LV
Sbjct: 196 AYALIRRMIRKGVTPNKQTYSVLVNGWCAAG-KMKEAQDFLEEMSRKGFNPPVRGRDLLV 254
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L L A ++++ M+ C PD+E+ + ++ A+ A + +++ + V +G+
Sbjct: 255 DGLLNAGYLEAAKEMVRKMTKEGCAPDVETLNSMLEAICKAGEAEFCIDIYND-VCRLGV 313
Query: 239 MPRQGMV-IKVAAALR------ANREMWKAVE------------MIEFLER--------- 270
P G I + AA + A R + +++E +I+ L R
Sbjct: 314 SPNVGTYKIMIPAACKEGRIDEAFRILHRSIEDGHRPFPSLYAPIIKALCRNGQFDDAFC 373
Query: 271 -------KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
KG P Y +++ C ++ A ++ MTE P + V +GL
Sbjct: 374 FFSDMKVKGHPPNRPVYTMLITMCGRGGRFVDAANYLVEMTELNLTPISRCFDMVTDGLK 433
Query: 324 GVGEWKLATVVRQ 336
G+ LA + Q
Sbjct: 434 NCGKHDLARKIEQ 446
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 34/144 (23%), Positives = 67/144 (46%), Gaps = 3/144 (2%)
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+DQ VE K S+ C +E Y+ ++ A+ + + A +++ M+ G+ P +
Sbjct: 157 VDQAVEVFN--KAKSALNCPQTIEVYNSLLFALCEVKYFHGAYALIRRMI-RKGVTPNKQ 213
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ A +M +A + +E + RKG +G +++V+G L A + V M
Sbjct: 214 TYSVLVNGWCAAGKMKEAQDFLEEMSRKGFNPPVRGRDLLVDGLLNAGYLEAAKEMVRKM 273
Query: 304 TERGFIPYIKVRQKVVEGLAGVGE 327
T+ G P ++ ++E + GE
Sbjct: 274 TKEGCAPDVETLNSMLEAICKAGE 297
>gi|12324362|gb|AAG52154.1|AC022355_15 unknown protein; 19199-17308 [Arabidopsis thaliana]
Length = 558
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L++ C D+L +A ++ + M S +C PDL++Y+ +I +++ D E+
Sbjct: 287 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 346
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 347 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 403
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 83/185 (44%), Gaps = 4/185 (2%)
Query: 146 LERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L M +
Sbjct: 191 IDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLSDMIEKKI 250
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P+L +++ +I A K +A ++ +M+ + P + + + KA
Sbjct: 251 NPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMHDRLDKAK 309
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+M EF+ K C Y +++G + + + M+ RG + +++GL
Sbjct: 310 QMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGL 369
Query: 323 AGVGE 327
G+
Sbjct: 370 FHDGD 374
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 28/120 (23%), Positives = 58/120 (48%), Gaps = 7/120 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L ++LA+L + ++ G P ++ S+ L C + ++D ++ +M +GY PD
Sbjct: 60 LVISLALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 115
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ L ++ EA ++ M C P+L +Y +V+ + + A ++ +M
Sbjct: 116 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKM 175
>gi|356577532|ref|XP_003556878.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 932
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 88/206 (42%), Gaps = 4/206 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I RSGC+P L +E+R +++VA IL EM G P+ T L+
Sbjct: 583 ALEIFDMMRRSGCIPTVHTYNALILGLVEKRQMTKAVA-ILDEMNVAGVGPNEHTYTTLM 641
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ +A + + + D+ +Y ++ + + + A+ + KEM
Sbjct: 642 QGYASLGDTEKAFQYFTVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN-- 699
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR V + A R ++W+A ++++ + ++G Y + C + + A
Sbjct: 700 IPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKAT 759
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLA 323
+ + M G P +K ++ G A
Sbjct: 760 EIIQEMEASGIKPNLKTYTTLINGWA 785
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/105 (23%), Positives = 51/105 (48%), Gaps = 2/105 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR AD++ +M+ G PD T +++ C + +A ++++ M +
Sbjct: 709 ILIDGWA-RRGDVWEAADLMQQMRKEGLLPDIHTYTSFINACCKAGDMQKATEIIQEMEA 767
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+ P+L++Y+ +I + A A+ +EM L G P + +
Sbjct: 768 SGIKPNLKTYTTLINGWARASMPEKALSCFEEMKL-AGFKPDKAV 811
>gi|302780409|ref|XP_002971979.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
gi|300160278|gb|EFJ26896.1| hypothetical protein SELMODRAFT_59387 [Selaginella moellendorffii]
Length = 136
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 66/129 (51%), Gaps = 4/129 (3%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+E C + V D +L EM + PD T LV+ C + ++VEA +VLK M+ C
Sbjct: 7 VEGYCNAGLVDDAERLLEEMVASDCSPDVYTYTSLVNGFCKVKRMVEAHRVLKRMAKGGC 66
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ +Y+ +I A A K A ++++EMV N G+ P + ++ +A
Sbjct: 67 QPNVVTYTALIDAFCRAGKPMVAYKLLEEMVGN-GVQPNFITYRSLIGGFCGTGDLEEAH 125
Query: 263 EMIEFLERK 271
+M++ LER
Sbjct: 126 KMLKRLERN 134
>gi|334183602|ref|NP_176522.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806282|sp|Q9C8T7.2|PP101_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g63330
gi|332195966|gb|AEE34087.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 559
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L++ C D+L +A ++ + M S +C PDL++Y+ +I +++ D E+
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 348 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + P+L +++ +I A K +A ++ +M+ + P + +
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMH 303
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ KA +M EF+ K C Y +++G + + + M+ RG +
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 364 TTLIQGLFHDGD 375
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G + T N L++ C Q+ A +L M P + + S ++ +
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 94
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV MG P + L + + +AV +++ + ++GC Y
Sbjct: 95 RISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153
Query: 281 EVVVEG 286
VVV G
Sbjct: 154 GVVVNG 159
Score = 37.4 bits (85), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 1/195 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY P T + L++ C ++ +A ++ M PD
Sbjct: 57 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ MV G P V L ++ A ++
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMV-QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 175
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + +++ + R A M +G P + ++ L G
Sbjct: 176 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 235
Query: 328 WKLATVVRQRFAELK 342
W A+ + E K
Sbjct: 236 WSDASQLLSDMIEKK 250
>gi|125561476|gb|EAZ06924.1| hypothetical protein OsI_29163 [Oryza sativa Indica Group]
Length = 687
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
+P A+AIL +P Q+ + A++E Q+ IL+E MKS G P T
Sbjct: 492 IPEAVAILDDMFHKDVLPNAQVYNAIIDAYVEHGPNDQAF--ILVEKMKSNGISPSIVTY 549
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ LC Q+ EA +++ +S+ +PD SY+ +I A + A+++ + M
Sbjct: 550 NLLIKGLCNQSQISEAEEIINSLSNHRLIPDAVSYNTLISACCYRGNIDKALDLQQRM 607
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 11/226 (4%)
Query: 103 DYLLSYTLQSL---HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
DY S L L + +A +LQ + +G VP I L + + CQ+ +
Sbjct: 336 DYTCSILLNGLCKDGKVSIAEEVLQSLVNAGLVPTRVIYNTLINGY----CQTGELEGAF 391
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+MKS PD T N L++ LC +++ A +L M P +E+++ +I A
Sbjct: 392 STFGQMKSRHIKPDHITYNALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAY 451
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++ EM N GL P + A N ++ +AV +++ + K
Sbjct: 452 GRTGQLEKCFIVLSEMQEN-GLKPNVVSYGSIVNAFCKNGKIPEAVAILDDMFHKDVLPN 510
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Q Y +++ +E A V M G P I +++GL
Sbjct: 511 AQVYNAIIDAYVEHGPNDQAFILVEKMKSNGISPSIVTYNLLIKGL 556
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 75/171 (43%), Gaps = 4/171 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A + C+++ + D+L+EM+ G +P T N L+ + QL + VL M
Sbjct: 410 NALINGLCKAERITNAQDLLMEMQDNGVNPTVETFNTLIDAYGRTGQLEKCFIVLSEMQE 469
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P++ SY ++ A K +AV ++ +M + ++P + + A +
Sbjct: 470 NGLKPNVVSYGSIVNAFCKNGKIPEAVAILDDM-FHKDVLPNAQVYNAIIDAYVEHGPND 528
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A ++E ++ G Y ++++G + A + + ++ IP
Sbjct: 529 QAFILVEKMKSNGISPSIVTYNLLIKGLCNQSQISEAEEIINSLSNHRLIP 579
>gi|357499777|ref|XP_003620177.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495192|gb|AES76395.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 612
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 95/216 (43%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL +L+R G + P + ++ + ++ C+ + V D+ EM S G PD T +
Sbjct: 180 ALQLLRRV--DGKLVQPNV--VMYNTIIDSMCKVKLVNEAFDLYSEMVSKGISPDVVTYS 235
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S C + +L +A + M S E PD+ ++SI++ + +A ++ M++
Sbjct: 236 ALISGFCILGKLNDAIGLFNKMISEEINPDVYTFSILVDGFCKEGRVKEAKNVL-AMMMK 294
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + +++ KA + + + G Q Y +++ G + ++
Sbjct: 295 QGIKPDVVTYCSLMDGYCLVKQVNKAKSIFNTMAQGGVTANVQSYNIMINGFCKIKKVDE 354
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M + IP + +++GL G+ A
Sbjct: 355 AMNLFKEMHCKNIIPDVVTYNSLIDGLCKSGKISYA 390
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 79/173 (45%), Gaps = 10/173 (5%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ ++ C+S ++ ++ EM G D T N ++ +LC Q+ +A +L M
Sbjct: 375 NSLIDGLCKSGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKD 434
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL---NMGLMPRQGMVIKVAAALRANR 256
PD+ +Y+I+I + + DA + +++++ N+ + M+ N
Sbjct: 435 EGIQPDMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMI----QGFCDND 490
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
KA+ ++ +E GC + YE+++ E E +A K + M RG +
Sbjct: 491 LFDKALALLSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMIARGLL 543
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 49/257 (19%), Positives = 109/257 (42%), Gaps = 7/257 (2%)
Query: 78 RIKVIDEMLESFIPLRPR--SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-V 134
++K+++E + + + + S + Y L+S L L A+ + + + P V
Sbjct: 208 KVKLVNEAFDLYSEMVSKGISPDVVTYSALIS-GFCILGKLNDAIGLFNKMISEEINPDV 266
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+L+ E R + ++L M G PD T L+ C + Q+ +A +
Sbjct: 267 YTFSILVDGFCKEGRVKE--AKNVLAMMMKQGIKPDVVTYCSLMDGYCLVKQVNKAKSIF 324
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M+ +++SY+I+I +K ++A+ + KEM ++P + L
Sbjct: 325 NTMAQGGVTANVQSYNIMINGFCKIKKVDEAMNLFKEMHCK-NIIPDVVTYNSLIDGLCK 383
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ ++ A+++++ + +G P Y +++ + + A + M + G P +
Sbjct: 384 SGKISYALKLVDEMHDRGVPHDKITYNSILDALCKNHQVDKAIALLTKMKDEGIQPDMYT 443
Query: 315 RQKVVEGLAGVGEWKLA 331
+++GL G K A
Sbjct: 444 YTILIDGLCKGGRLKDA 460
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 34/160 (21%), Positives = 75/160 (46%), Gaps = 13/160 (8%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
+ +K++DEM + +P KI Y+ +L ++ H + A+A+L + G P
Sbjct: 389 YALKLVDEMHDRGVP-----HDKITYNSILDALCKN-HQVDKAIALLTKMKDEGIQP--- 439
Query: 137 IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ + ++ C+ + D I ++ GY+ T ++ C D +A +
Sbjct: 440 -DMYTYTILIDGLCKGGRLKDAQNIFEDLLVKGYNITVYTYTVMIQGFCDNDLFDKALAL 498
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L M C+P+ ++Y I+I ++ + + A ++++EM+
Sbjct: 499 LSKMEDNGCIPNAKTYEIIILSLFEKDENDMAEKLLREMI 538
>gi|224713520|gb|ACN62067.1| PPR-816 [Zea mays]
Length = 816
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 12/253 (4%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR +Y Y +L H LALA + LR+G ++ +++S L+ C++
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGL----RVDAIIASHLLKGFCEA 161
Query: 153 QSVA---DILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVPDL 206
+ DILL +G PD + N L+ SLC + +A +L+ M+ C PD+
Sbjct: 162 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV 221
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ VI N A ++ KEMV G+ P V AL R M KA +
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMV-QRGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ KG Y ++ G ++ A + M + +P + ++ L G
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340
Query: 327 EWKLATVVRQRFA 339
+ K A V A
Sbjct: 341 KIKEARDVFDTMA 353
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD N L+ C + ++ +A +V M SA P+
Sbjct: 514 LGRVMDAQNIFDLTV---NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + A R + V+
Sbjct: 571 VVGYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 629
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 630 HEMTE-SGIAMNKCTYSIVLRGLFKNR 655
>gi|242061252|ref|XP_002451915.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
gi|241931746|gb|EES04891.1| hypothetical protein SORBIDRAFT_04g009890 [Sorghum bicolor]
Length = 571
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 105/261 (40%), Gaps = 4/261 (1%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPL-RPRSRPK-IAYDYLLSYTLQSLHPLPLALA 121
P+ F++ + IDE F + R RP I + ++++ L L A+
Sbjct: 298 PDVFTYTELIRGLGKAGRIDEAYHFFYEMQREGCRPDTIVMNNMINF-LGKAGRLDDAMK 356
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ Q C+P + A E + ++ V MK G P T + L+
Sbjct: 357 LFQEMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGF 416
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +++ +A +L+ M P +Y +I A+ A++ + A E+ +E+ N G
Sbjct: 417 CKTNRMEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKENCGSSSS 476
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ + + +A R + A+ M + + + GC Y ++ G A T+
Sbjct: 477 RVYAVMIKHLGKAGR-LDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALSTMR 535
Query: 302 GMTERGFIPYIKVRQKVVEGL 322
M E G IP I ++ GL
Sbjct: 536 RMQEHGCIPDINSYNIILNGL 556
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/204 (22%), Positives = 88/204 (43%), Gaps = 15/204 (7%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDY-QQIPELLGSFEEACQNPNPFSF---LSNFPQN 76
+ +LR + S+ T ++A ++K ++P +E+ +P+ F++ + F +
Sbjct: 360 EMGTLRCIPSVVTYNTIIKALFESKSRASEVPSWFERMKESGISPSSFTYSILIDGFCKT 419
Query: 77 HRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+R++ +++EM E P P AY L+ L LA + Q L+ C
Sbjct: 420 NRMEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDLACELFQE-LKENCG 472
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ L + + ++ EM +G PD N L+S L L EA
Sbjct: 473 SSSSRVYAVMIKHLGKAGRLDDAINMFDEMNKLGCAPDVYAYNALMSGLARTGMLDEALS 532
Query: 193 VLKGMSSAECVPDLESYSIVIGAM 216
++ M C+PD+ SY+I++ +
Sbjct: 533 TMRRMQEHGCIPDINSYNIILNGL 556
>gi|414591656|tpg|DAA42227.1| TPA: PPR-814a [Zea mays]
Length = 816
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 105/253 (41%), Gaps = 12/253 (4%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR +Y Y +L H LALA + LR+G ++ +++S L+ C++
Sbjct: 106 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGL----RVDAIIASHLLKGFCEA 161
Query: 153 QSVA---DILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVPDL 206
+ DILL +G PD + N L+ SLC + +A +L+ M+ C PD+
Sbjct: 162 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADDLLRMMAEGGTVCSPDV 221
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ VI N A ++ KEMV G+ P V AL R M KA +
Sbjct: 222 VAYNTVIDGFFKEGDVNKACDLFKEMV-QRGIPPDLVTYSSVVHALCKARAMDKAEAFLR 280
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ KG Y ++ G ++ A + M + +P + ++ L G
Sbjct: 281 QMVNKGVLPDNWTYNNLIYGYSSTGQWKEAVRVFKEMRRQSILPDVVALNTLMGSLCKYG 340
Query: 327 EWKLATVVRQRFA 339
+ K A V A
Sbjct: 341 KIKEARDVFDTMA 353
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD N L+ C + ++ +A +V M SA P+
Sbjct: 514 LGRVMDAQNIFDLTV---NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 570
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + A R + V+
Sbjct: 571 VVGYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFEAGRTVPAKVKF 629
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 630 HEMTE-SGIAMNKCTYSIVLRGLFKNR 655
>gi|356518400|ref|XP_003527867.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Glycine max]
Length = 546
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 2/199 (1%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
R VP P +L + + R + +++ MKS G +P+ + LV LC + +L
Sbjct: 298 RDHIVPDPLTYNVLINGFC-RGGKPDRARNVIQFMKSNGCYPNVYNYSALVDGLCKVGKL 356
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
+A VL + + PD +Y+ +I + K+++A+E+++EM N G
Sbjct: 357 EDAKGVLAEIKGSGLKPDAVTYTSLINFLCRNGKSDEAIELLEEMKEN-GCQADSVTFNV 415
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ L + +A++M+E L ++G + Y +V+ + E A + + M RG
Sbjct: 416 LLGGLCREGKFEEALDMVEKLPQQGVYLNKGSYRIVLNSLTQKCELKRAKELLGLMLRRG 475
Query: 308 FIPYIKVRQKVVEGLAGVG 326
F P+ +++ L G
Sbjct: 476 FQPHYATSNELLVCLCKAG 494
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 41/159 (25%), Positives = 73/159 (45%), Gaps = 7/159 (4%)
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGY-HPDCGTCNYLVSSLCAIDQLVEAAKV 193
L+ S ++ C++ V D+ EM S + PD T N L++ C + A V
Sbjct: 268 NLVTYSTLMDGLCRNGRVKEAFDLFEEMVSRDHIVPDPLTYNVLINGFCRGGKPDRARNV 327
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
++ M S C P++ +YS ++ + K DA ++ E + GL P + L
Sbjct: 328 IQFMKSNGCYPNVYNYSALVDGLCKVGKLEDAKGVLAE-IKGSGLKPDAVTYTSLINFLC 386
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
N + +A+E++E ++ GC + V++ G CRE
Sbjct: 387 RNGKSDEAIELLEEMKENGCQADSVTFNVLLGGL--CRE 423
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 50/97 (51%), Gaps = 2/97 (2%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
R++L+S L ++C+ + ++L M G+ P T N L+ LC + +AA L +
Sbjct: 449 RIVLNS--LTQKCELKRAKELLGLMLRRGFQPHYATSNELLVCLCKAGMVDDAAVALFDL 506
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
P LE++ ++IG + RK E++ E+V+
Sbjct: 507 VEMGFQPGLETWEVLIGLICRERKLLYVFELLDELVV 543
>gi|413952776|gb|AFW85425.1| chloroplast RNA splicing4 [Zea mays]
Length = 1435
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 80/197 (40%), Gaps = 37/197 (18%)
Query: 150 CQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
C + VA D+L E++ G PD T N L+S+ L +A V + M ++EC PDL +
Sbjct: 271 CLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWT 330
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIK-------- 247
Y+ ++ K +A + +E+V G MP ++G V K
Sbjct: 331 YNAMVSVHGRCGKAEEAERLFRELV-EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQL 389
Query: 248 VAAALRANREMWK--------------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
V A + N + AV + + + GC Y V+++ +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRI 449
Query: 294 ILAGKTVMGMTERGFIP 310
AGK + MT+ G P
Sbjct: 450 AEAGKVLEDMTDAGLKP 466
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+++G PD T ++ SL ++++ EA KVL+ M+ A P L ++S +I A +
Sbjct: 423 EMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGG 482
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+ DA M+ + G+ P
Sbjct: 483 RRADAENTFDCMIAS-GVKP 501
>gi|357130030|ref|XP_003566661.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 827
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 61/256 (23%), Positives = 106/256 (41%), Gaps = 18/256 (7%)
Query: 93 RPRSRPKIA------YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
R + P++A Y L+ ++ P L A + R LR+G + + ++ +L
Sbjct: 112 REEAGPRVAPLTVRTYGILMDCCCRARRP-DLGPAFVARLLRAGL----KTGTIQATTFL 166
Query: 147 ERRCQSQ---SVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SA 200
+ C ++ D+LL M + PD + N ++ SLC + EA +++ M+
Sbjct: 167 KCLCHAKRTDEAVDVLLHRMSELSCVPDAISYNTVIKSLCGDSRSQEALDMVQRMAKEGG 226
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C PD+ S++ VI + + A + EMV G++P G + AL R M K
Sbjct: 227 RCSPDVVSFNTVIHGFFKQGEVSKACNLFNEMV-QKGVVPDVGTYNSIVDALCKARAMDK 285
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A ++ + KG Y ++ G + + K MT +G IP +
Sbjct: 286 AEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMTSKGLIPDTVTFSSFMS 345
Query: 321 GLAGVGEWKLATVVRQ 336
L G K A + Q
Sbjct: 346 SLCKHGRSKDAEEIFQ 361
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 83/194 (42%), Gaps = 6/194 (3%)
Query: 119 ALAILQRTLRSG--CVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
AL ++QR + G C P V ++ + ++ + ++ EM G PD GT N
Sbjct: 214 ALDMVQRMAKEGGRCSPDVVSFNTVIHGFF--KQGEVSKACNLFNEMVQKGVVPDVGTYN 271
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V +LC + +A VL+ M PD +Y+ +I S + ++ +M ++M +
Sbjct: 272 SIVDALCKARAMDKAEFVLRQMVDKGVEPDGVTYNAIIHGYSCSGHWKESAKMFRKMT-S 330
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P ++L + A E+ +++ KG Y +++ G +
Sbjct: 331 KGLIPDTVTFSSFMSSLCKHGRSKDAEEIFQYMTTKGHMPDIVSYSILLHGYATEGRFAD 390
Query: 296 AGKTVMGMTERGFI 309
M ++G +
Sbjct: 391 MNNLFHSMADKGIV 404
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M S+G PD T N LVS C ++ + + + M + P +Y+IV+ +
Sbjct: 570 VLDAMVSVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREMLHKKVKPTTVTYNIVLDGLL 629
Query: 218 TARKTNDAVEMMKEMV 233
A +T+ A +M EM+
Sbjct: 630 RAGRTSAAKKMFHEMI 645
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 69/149 (46%), Gaps = 7/149 (4%)
Query: 140 LLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
++ S +E R +Q V ++++ IG P T N L+ C + ++ +A VL M
Sbjct: 519 IIHSLCIEGRVMDAQDVFNLVIH---IGDRPTIVTFNSLIDGYCLVGKMEKAFGVLDAMV 575
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANRE 257
S PD+ + + ++ + K +D + + +EM L+ + P I + LRA R
Sbjct: 576 SVGIEPDVVTNNTLVSGYCKSGKIDDGLILFREM-LHKKVKPTTVTYNIVLDGLLRAGRT 634
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
A +M + G + Y+++++G
Sbjct: 635 -SAAKKMFHEMIDSGTAVDIDTYKILLKG 662
>gi|297746144|emb|CBI16200.3| unnamed protein product [Vitis vinifera]
Length = 1093
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 52/202 (25%), Positives = 89/202 (44%), Gaps = 6/202 (2%)
Query: 85 MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSS 143
+LE I + R RP LL L SL A ++ GC P + +L+S
Sbjct: 646 LLEDMI--QKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSD 703
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L RR + +LLEMK + PD T N L++ LC + +EA KVL M C
Sbjct: 704 --LGRRGRIDDSKTLLLEMKRRRFKPDVVTYNILINHLCKEGRALEAYKVLVEMQVGGCE 761
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
P+ +Y +++ ++++ M++ G PR + L N ++ A
Sbjct: 762 PNAATYRMMVDGFCQVEDFEGGLKVLSAMLM-CGHCPRLESFCDLVVGLLKNGKIDGACF 820
Query: 264 MIEFLERKGCPIGFQGYEVVVE 285
++E +E++ + +E +V+
Sbjct: 821 VLEEMEKRKMRFHLEAWEALVK 842
>gi|225439604|ref|XP_002265961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
mitochondrial-like [Vitis vinifera]
Length = 505
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 2/210 (0%)
Query: 119 ALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ IL L G V ++LSS ++ V + EM+ +G++P CN +
Sbjct: 203 AIRILNYMLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLGFYPGRVDCNNV 262
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ L +++A V M + PD SY++++ ++ A ++ EM++ +G
Sbjct: 263 IRFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLV-LG 321
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
++P +L + + V M+ + GC + Y +++EG + R+
Sbjct: 322 VVPDIHAYNVYINSLCKQNNIEEGVRMLASMRELGCKPDYVTYNMLLEGMSKVRDLGGMR 381
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ M G + + +++GL G GE
Sbjct: 382 ELAREMELEGVQWNWETYRIMLDGLVGKGE 411
>gi|255541015|ref|XP_002511572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550687|gb|EEF52174.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 735
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 88/182 (48%), Gaps = 4/182 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+R + + IL M S G PD T N +++ LC + + + K + C+P++
Sbjct: 445 KRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNII 504
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+I+I ++ ARK +A+++++E + N GL+P V + N ++ +A ++
Sbjct: 505 TYNILIESLCKARKVTEALDLLEE-IRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRR 563
Query: 268 LERKG--CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+E++ C Y +++ E + +A K M ++G P + +++G V
Sbjct: 564 MEQQYRICHT-VATYNIMINAFSEKLDMDMAQKLFHEMGDKGCDPDSYTYRVMIDGFCKV 622
Query: 326 GE 327
G
Sbjct: 623 GN 624
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 5/162 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL ++ + G P L+ + + C S + ++L + GY PD T N L+
Sbjct: 382 ALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDA-NNLLNAAIAKGYLPDIFTFNTLI 440
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C ++ A +L M S PD+ +Y+ ++ + A K D +E K M++ G
Sbjct: 441 DGYCKRLKMDNAIGILDSMWSHGVTPDVITYNSILNGLCKAAKPEDVMETFK-MIMEKGC 499
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC---PIGF 277
+P + +L R++ +A++++E + +G P+ F
Sbjct: 500 LPNIITYNILIESLCKARKVTEALDLLEEIRNRGLIPDPVSF 541
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/225 (20%), Positives = 93/225 (41%), Gaps = 8/225 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
ALA+ + L G P ++L + ++ Q V ++ +M G PD T N
Sbjct: 347 ALALFEEALGKGLKP----SIVLYNTLIKGLSQQGLVLKALQLMNDMSKEGMSPDIWTYN 402
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ LC + + +A +L + +PD+ +++ +I K ++A+ ++ M +
Sbjct: 403 LVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLIDGYCKRLKMDNAIGILDSM-WS 461
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + L + +E + + KGC Y +++E + R+
Sbjct: 462 HGVTPDVITYNSILNGLCKAAKPEDVMETFKMIMEKGCLPNIITYNILIESLCKARKVTE 521
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + + RG IP V+ G G+ A + +R +
Sbjct: 522 ALDLLEEIRNRGLIPDPVSFGTVISGFCNNGDLDEAYQLFRRMEQ 566
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 75/185 (40%), Gaps = 14/185 (7%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ L MK G PD T + S C + + A ++L M S C + Y VI
Sbjct: 133 VYLRMKHEGIAPDVCTFTIRIKSFCRTKRPLAALRLLNNMPSQGCELNAVVYCTVISGFY 192
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIG 276
+A E+ +M L +G+ P K+ L + + +++ + + G CP
Sbjct: 193 EENYQVEAYELFNKM-LRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCPNL 251
Query: 277 FQGYEVVVEGCLECREYILAGKT---------VMGMTERGFIPYIKVRQKVVEGLAGVGE 327
F + + ++G CR+ +L G + M +G P ++ G + VG+
Sbjct: 252 FT-FNIFIQGL--CRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGK 308
Query: 328 WKLAT 332
+ A+
Sbjct: 309 IQDAS 313
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 49/241 (20%), Positives = 98/241 (40%), Gaps = 17/241 (7%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
LR P IA L + L L +L + L++G P L + +++ C+
Sbjct: 208 LRLGIFPHIATFNKLMHILCKKGHLQEGEKLLNKVLKNGVCP----NLFTFNIFIQGLCR 263
Query: 152 SQ----------SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
+ L +M + G PD T N ++ + ++ +A+++LK
Sbjct: 264 KGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILKDAKFKG 323
Query: 202 CVPDLESY-SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
VPD +Y S++IG + A+ + +E L GL P + + L + K
Sbjct: 324 FVPDEFTYCSLIIGVCQDG-DIDHALALFEE-ALGKGLKPSIVLYNTLIKGLSQQGLVLK 381
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A++++ + ++G Y +V+ G + A + +G++P I +++
Sbjct: 382 ALQLMNDMSKEGMSPDIWTYNLVINGLCKMGCVSDANNLLNAAIAKGYLPDIFTFNTLID 441
Query: 321 G 321
G
Sbjct: 442 G 442
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 87/216 (40%), Gaps = 11/216 (5%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A + + LR G P + L+ L ++ Q +L ++ G P+ T N
Sbjct: 200 AYELFNKMLRLGIFPHIATFNKLMH--ILCKKGHLQEGEKLLNKVLKNGVCPNLFTFNIF 257
Query: 178 VSSLC-------AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ LC A ++VEA L M + PD +Y+ +I S K DA ++K
Sbjct: 258 IQGLCRKGVLEGANSKVVEAENYLHKMVNKGLEPDDFTYNTIIYGYSKVGKIQDASRILK 317
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+ G +P + + + + ++ A+ + E KG Y +++G +
Sbjct: 318 DAKFK-GFVPDEFTYCSLIIGVCQDGDIDHALALFEEALGKGLKPSIVLYNTLIKGLSQQ 376
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ A + + M++ G P I V+ GL +G
Sbjct: 377 GLVLKALQLMNDMSKEGMSPDIWTYNLVINGLCKMG 412
>gi|449436637|ref|XP_004136099.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
gi|449509164|ref|XP_004163514.1| PREDICTED: pentatricopeptide repeat-containing protein At1g80880,
mitochondrial-like [Cucumis sativus]
Length = 547
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 90/197 (45%), Gaps = 9/197 (4%)
Query: 134 VPQIRLLLSSAWLERR--CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
+P + + S A++ R C ++++ IL ++K +G PD T N L+S LC +L EA
Sbjct: 318 IPSVEVYNSLAYVLTRENCFNEALK-ILEKIKEVGLRPDSTTYNSLISPLCEAGKLDEAK 376
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251
VL M+ P +E+Y I A + + E++K M + GL P +G + +
Sbjct: 377 DVLTMMTEDNISPTIETYHSFIQAADSKM----SFELLKRMRQD-GLGPTEGTFLIMFNK 431
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
E A+ + ++R + Y V+++G C A + M GFI +
Sbjct: 432 SFELEEPEYALNVWVEMKRYEVFPSCEHYSVLIQGLATCGHLKKARELYDEMILHGFIAH 491
Query: 312 IKVRQKVVE-GLAGVGE 327
K++ + E L + E
Sbjct: 492 PKIKTLLKEPDLGSIDE 508
>gi|356532718|ref|XP_003534918.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 529
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 58/288 (20%), Positives = 119/288 (41%), Gaps = 3/288 (1%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTL 110
+LL E+ PN + + + K+++E + + + R A Y L Y
Sbjct: 136 KLLRMIEDRSTRPNVVMYNTIIDGLCKDKLVNEAYDLYSEMDARGIFPDAITYTTLIYGF 195
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
L L A ++L + P I +L +A L + + ++L M G P
Sbjct: 196 CLLGQLMGAFSLLDEMILKNINPGVYIYNILINA-LCKEGNVKEAKNLLAVMTKEGIKPG 254
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ C + ++ A ++ M P++ SY+I+I + ++ ++A+ +++
Sbjct: 255 VVTYSTLMDGYCLVGEVQNAKQIFHAMVQMGVNPNVYSYNIMINGLCKCKRVDEAMNLLR 314
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
EM L+ ++P + L + + A+ ++ + +G P Y +++ +
Sbjct: 315 EM-LHKNMVPDTVTYNSLIDGLCKSGRITSALNLMNEMHHRGQPADVVTYTSLLDALCKN 373
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+ A M M ERG P + +++GL G K A + Q
Sbjct: 374 QNLDKATALFMKMKERGIQPTMYTYTALIDGLCKGGRLKNAQELFQHL 421
>gi|359474768|ref|XP_002270963.2| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic [Vitis vinifera]
Length = 1022
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 4/218 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE-RRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+A L SG V V + LL+ + R ++ + + + G P TC +L
Sbjct: 227 AMADLNEVGESG-VAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFL 285
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+SSL ++L ++ V + M PD+ +S I A K DA+++ +M +G
Sbjct: 286 LSSLVKANELEKSYWVFETMRQG-VSPDVYLFSTAINAFCKGGKVEDAIQLFFDME-KLG 343
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + L + + +A E + + G Y V++ G ++ ++ A
Sbjct: 344 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 403
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
+ E+GF P V +++G +G A +R
Sbjct: 404 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 441
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ +C I +L EA + S + VP++ +Y ++I A
Sbjct: 618 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 677
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + ++ E+ L L + + A N +A ++ + + KG P Y
Sbjct: 678 KIEEGEKLFTEL-LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATY 736
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ G A + M + G +P + ++ G +G+ V Q +
Sbjct: 737 SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 795
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G P+ L+ C + Q+ + VL+ MSS + P+ +Y+++I S +
Sbjct: 758 EMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSG 817
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
A +++ EMV G++P
Sbjct: 818 DMKTAAKLLHEMV-GKGIVP 836
>gi|346703131|emb|CBX25230.1| hypothetical_protein [Oryza brachyantha]
Length = 746
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 90/206 (43%), Gaps = 43/206 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCN 175
AL +Q+ + +G P QI + ++ CQ+ V L M + G+ PD T N
Sbjct: 274 ALGYIQQEIANGFEP-DQITY---NTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYN 329
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V+ LC QL EA +L M C+PD+ +++ +I A+ + + +A+++ +++ L
Sbjct: 330 IVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEEALDLARQVTLK 389
Query: 236 MGLMPRQ-------GMVIKVAA---ALRANREM-------------------------WK 260
GL P + KV ALR EM K
Sbjct: 390 -GLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLCSLGKLGK 448
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEG 286
A+++++ +E GCP Y +++G
Sbjct: 449 ALDLLKEMESAGCPRSTVTYNTIIDG 474
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 16/195 (8%)
Query: 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQN----HRIKVIDEMLESFIPLRPRSRP 98
DA Y Q E+ FE N +F++ QN H +KV+D M++ P
Sbjct: 273 DALGYIQ-QEIANGFEPDQITYN--TFVNGLCQNGHVGHALKVMDVMVQE------GHDP 323
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD 157
+ ++ L L A IL + + GC+P + L+ + R + D
Sbjct: 324 DVFTYNIVVNCLCKNGQLEEAKGILNQMVERGCLPDITTFNTLIVALCSGNRLEE--ALD 381
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ ++ G PD T N L+++LC + A ++ + M S+ C PD +Y+ +I +
Sbjct: 382 LARQVTLKGLSPDVYTFNILINALCKVGDPQLALRLFEEMKSSGCTPDEVTYNTLIDNLC 441
Query: 218 TARKTNDAVEMMKEM 232
+ K A++++KEM
Sbjct: 442 SLGKLGKALDLLKEM 456
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 75/171 (43%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMKS G PD T N L+ +LC++ +L +A +LK M SA C +Y+ +I +
Sbjct: 420 EMKSSGCTPDEVTYNTLIDNLCSLGKLGKALDLLKEMESAGCPRSTVTYNTIIDGLCKKM 479
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A E+ +M L G+ + L ++ + A ++I + +G Y
Sbjct: 480 RIEEAEEVFDQMDLQ-GISRNAITFNTLIDGLCKDKRIDDANQLISQMISEGLQPNNITY 538
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ + + A + MT GF + ++ GL G ++A
Sbjct: 539 NSILTHYCKQGDIKKAADILQTMTANGFEVDVVTYGTLINGLCKAGRTQVA 589
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 5/188 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ + + D ++ +M S G P+ T N +++ C + +AA +L+ M++
Sbjct: 504 NTLIDGLCKDKRIDDANQLISQMISEGLQPNNITYNSILTHYCKQGDIKKAADILQTMTA 563
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
D+ +Y +I + A +T A+++++ M + G+ V +L
Sbjct: 564 NGFEVDVVTYGTLINGLCKAGRTQVALKLLRGMRIK-GMRATPKAYNPVIQSLFRRNNTR 622
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ + + G P Y++V G C A ++ M ++GFIP + +
Sbjct: 623 DAMNLFREMTEVGEPPDAFTYKIVFRGLCRGGGSIREAFDFLLEMVDKGFIPEFSSFRML 682
Query: 319 VEGLAGVG 326
EGL +G
Sbjct: 683 AEGLLNLG 690
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 104/258 (40%), Gaps = 8/258 (3%)
Query: 68 SFLSNFP-QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRT 126
SFL ++ Q + +D +L PL + Y++LL+ ++ + L +
Sbjct: 118 SFLESYARQQLFVDAVDLVLNQLDPLFGIQADTVVYNHLLNVLVEG-SKMKLLETVYSEM 176
Query: 127 LRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
G P V L+ + L R Q ++ +L EM S G PD T L+
Sbjct: 177 GERGIKPDVVTFNTLMKA--LCRAHQVRTAVLMLEEMSSSGVAPDETTFTTLMQGFVEEG 234
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+ A +V M C P + +++I + DA+ +++ + N G P Q
Sbjct: 235 SIKAALRVKARMLEMGCSPTKVTVNVLINGYCKLGRVEDALGYIQQEIAN-GFEPDQITY 293
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MT 304
L N + A+++++ + ++G Y +VV CL + K ++ M
Sbjct: 294 NTFVNGLCQNGHVGHALKVMDVMVQEGHDPDVFTYNIVVN-CLCKNGQLEEAKGILNQMV 352
Query: 305 ERGFIPYIKVRQKVVEGL 322
ERG +P I ++ L
Sbjct: 353 ERGCLPDITTFNTLIVAL 370
>gi|147799110|emb|CAN63706.1| hypothetical protein VITISV_013107 [Vitis vinifera]
Length = 390
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/210 (21%), Positives = 91/210 (43%), Gaps = 2/210 (0%)
Query: 119 ALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ IL L G V ++LSS ++ V + EM+ +G++P CN +
Sbjct: 156 AIRILNYMLNDGYAVDAKMCSIILSSLCEQKGLSGDEVLRFMEEMRKLGFYPGRVDCNNV 215
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ L +++A V M + PD SY++++ ++ A ++ EM++ +G
Sbjct: 216 IXFLVKEGMVMDALGVFDQMKTDGIKPDTVSYTMILNGVTADGDYEKADDLFDEMLV-LG 274
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
++P +L + + V M+ + GC + Y +++EG + R+
Sbjct: 275 VVPDIHAYNVYINSLCKQNNIEEGVRMLASMRELGCKPDYVXYNMLLEGMSKVRDLGGMR 334
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ M G + + +++GL G GE
Sbjct: 335 ELAREMELEGVQWNWETYRIMLDGLVGKGE 364
>gi|15238505|ref|NP_201359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75180383|sp|Q9LSL9.1|PP445_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g65560
gi|8978284|dbj|BAA98175.1| unnamed protein product [Arabidopsis thaliana]
gi|110737310|dbj|BAF00601.1| hypothetical protein [Arabidopsis thaliana]
gi|332010688|gb|AED98071.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 915
Score = 55.1 bits (131), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 59/294 (20%)
Query: 54 LGSFEEACQ----------NPNPFSFLSNFPQNHRIKVIDEMLESF--IPLRPRSRPKIA 101
LG+ EEA Q +P+ F++ S + K +D + F +PL+ R ++A
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y +L+ H L +A I D+ ++
Sbjct: 291 YTHLI-------HGLCVARRI------------------------------DEAMDLFVK 313
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK P T L+ SLC ++ EA ++K M P++ +Y+++I ++ + K
Sbjct: 314 MKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK 373
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEMIEFLERKGCPIGFQ 278
A E++ +M L GLMP VI A + R M + AV+++E +E + +
Sbjct: 374 FEKARELLGQM-LEKGLMPN---VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTR 429
Query: 279 GYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G C+ + V+ M ER +P + +++G G + A
Sbjct: 430 TYNELIKG--YCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 117/266 (43%), Gaps = 15/266 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+ ++ EM E+ I +P I +L +L S A +L + L G +P
Sbjct: 343 LNLVKEMEETGI------KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP----N 392
Query: 139 LLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ +A + C+ + D++ M+S P+ T N L+ C + +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLN 451
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + +PD+ +Y+ +I + + A ++ M + GL+P Q + +L +
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN-DRGLVPDQWTYTSMIDSLCKS 510
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ + +A ++ + LE+KG Y +++G + + A + M + +P
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 316 QKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K AT++ ++ ++
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKI 596
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 27/266 (10%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
+P ++ D +L + L A + Q+ L SG P + R +
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC-REGRLLDAE 657
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG-- 214
D++ +M+ G PD T + L+ + Q A VLK M C P ++ +I
Sbjct: 658 DMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Query: 215 ----------------AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
AMS + + VE++++MV + P K+ + +
Sbjct: 718 LEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV-EHSVTPNAKSYEKLILGICEVGNL 776
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC----REYILAGKTVMGMTERGFIPYIKV 314
A ++ + ++R G E+V L C +++ A K V M G +P ++
Sbjct: 777 RVAEKVFDHMQRNE---GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLES 833
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++ GL GE + T V Q +
Sbjct: 834 CKVLICGLYKKGEKERGTSVFQNLLQ 859
>gi|302793330|ref|XP_002978430.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
gi|300153779|gb|EFJ20416.1| hypothetical protein SELMODRAFT_108734 [Selaginella moellendorffii]
Length = 475
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 17/178 (9%)
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIP--LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQ 124
FS Q H E+ E+ I RP + + Y+ LL + P A + +
Sbjct: 237 FSLARKHDQAH------ELFEAMISRGCRPNA---VTYNCLLHGLCKESKP-DEAHELFR 286
Query: 125 RTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
+ + GC P V LL + + Q+ V D EM S G+ PD N L+
Sbjct: 287 KMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEVFD---EMVSKGHDPDVVAYNCLLKGFF 343
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+ EA ++ + M S EC PD S++I+I +S A++ +DAVE+ + M + G P
Sbjct: 344 RAGKPGEARQLFQVMVSRECKPDTVSHNIMIDGLSKAKRLDDAVEVFERMEQDHGCSP 401
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/166 (24%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD + + L+ C ID+L A K+ K M CVP++ +Y+ + + + DA +
Sbjct: 155 PDVVSYSILIDGFCKIDELGRAEKLYKQMIDLNCVPNVTTYNAFLNGLMRKGRIADAQGV 214
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+EM+ + G P + R+ +A E+ E + +GC Y ++ G
Sbjct: 215 YEEMI-SAGCSPDVITYSTLIHGFSLARKHDQAHELFEAMISRGCRPNAVTYNCLLHGLC 273
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ + A + M ERG P ++ G VG+ + A V
Sbjct: 274 KESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFCNVGKIEQAVEV 319
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 68/159 (42%), Gaps = 1/159 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T N ++ L ++ +A V + M SA C PD+ +YS +I S ARK + A E+
Sbjct: 190 PNVTTYNAFLNGLMRKGRIADAQGVYEEMISAGCSPDVITYSTLIHGFSLARKHDQAHEL 249
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ M+ + G P + L + +A E+ + +GC Y ++ G
Sbjct: 250 FEAMI-SRGCRPNAVTYNCLLHGLCKESKPDEAHELFRKMVERGCDPDKVTYTTLLYGFC 308
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + M +G P + +++G G+
Sbjct: 309 NVGKIEQAVEVFDEMVSKGHDPDVVAYNCLLKGFFRAGK 347
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS------SAECVPDL 206
S +L M GY PD T + L++ LC D++ EA + L+GM+ ++ C
Sbjct: 66 DSALSLLETMIKRGYCPDMATHSMLINELCKADKIQEAQEFLQGMNRTISTRASSCF--- 122
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
SY+ ++ ++ A+K + A + MV ++P
Sbjct: 123 -SYNSLLNSLCKAKKVHQAFAIFSTMVSERSVVP 155
>gi|297816676|ref|XP_002876221.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
gi|297322059|gb|EFH52480.1| hypothetical protein ARALYDRAFT_906766 [Arabidopsis lyrata subsp.
lyrata]
Length = 754
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 32/131 (24%), Positives = 66/131 (50%), Gaps = 4/131 (3%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ D++L+ GY PD T N ++S LC + ++ EA + L M + +C P+ +Y+ +I
Sbjct: 317 IMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEFLDQMITRDCSPNTVTYNTLIS 373
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + +A E+ + ++ + G++P + L R A+E+ E + KGC
Sbjct: 374 TLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432
Query: 275 IGFQGYEVVVE 285
Y ++++
Sbjct: 433 PDEFTYNMLID 443
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 3/177 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM+S G PD T N L+ SLC+ +L EA +LK M + C + +Y+ +I
Sbjct: 421 ELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGF 480
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPI 275
A K +A E+ EM ++ G+ + L +R + A ++++ + +G P
Sbjct: 481 CKANKIREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRRVEDASQLMDQMIMEGQKPD 539
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
F ++ C + A V MT G P I ++ GL G ++A+
Sbjct: 540 KFTYNSLLTHFC-RGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVAS 595
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/203 (25%), Positives = 91/203 (44%), Gaps = 14/203 (6%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V D ++ +M G PD T N L++ C + +AA +++ M+S C PD+
Sbjct: 516 CKSRRVEDASQLMDQMIMEGQKPDKFTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDI 575
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVL-NMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I + A + A ++++ + + + L P V L R+ +A+ +
Sbjct: 576 VTYGTLISGLCKAGRVEVASKLLRSIQMKGIALTPHA--YNPVIQGLFRKRKTTEAINLF 633
Query: 266 -EFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
E LE+ Y +V G C A ++ + E+GF+P + EGL
Sbjct: 634 REMLEQNEAAPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
Query: 324 GVGEW----KLATVVRQ--RFAE 340
+ KL +V Q RF+E
Sbjct: 694 TLSMEETLVKLVNMVMQKARFSE 716
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 77/186 (41%), Gaps = 5/186 (2%)
Query: 150 CQSQSVADILLEMKSI----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ V D L ++ + G+ PD T N LV+ LC + A +++ M PD
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ VI + + +AVE + +M+ P + + L ++ +A E+
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEFLDQMI-TRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
L KG + +++G R + +A + M +G P +++ L
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 326 GEWKLA 331
G+ A
Sbjct: 449 GKLDEA 454
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 73/175 (41%), Gaps = 8/175 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G PD T N L+ +LC QL A +L+ M S VPD ++++ ++
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTIMQGYIEEG 238
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF--- 277
+ A+ + ++MV G + V + + + + + F++ GF
Sbjct: 239 DLDGALRIREQMV-EFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 278 -QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +V G + A + + M + G+ P + V+ GL +GE K A
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEA 349
>gi|255561697|ref|XP_002521858.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538896|gb|EEF40494.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 533
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 97/218 (44%), Gaps = 10/218 (4%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY---HPDCGTC 174
+ L + R+GC+P ++ + ++ C+ + + ++S+G P+ T
Sbjct: 1 MGLRFFKEMERNGCLP----NVVTYNTMIDGYCKLKRTDEAFGFLRSMGLKGLEPNLITF 56
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N +++ LC +L E ++VL MS VPD +Y+ ++ + A+ + EMV
Sbjct: 57 NMIINGLCRDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVR 116
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREY 293
N GL P + ++ + +A+E + + +G CP + Y ++ G +
Sbjct: 117 N-GLSPNVVTYTSLINSMCKAGNLNRAMEFFDQMHVRGLCP-NERTYTTIINGFAQQGLL 174
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + MT GFIP I ++ G +G + A
Sbjct: 175 DEAYRVLNEMTRSGFIPSIVTYNALINGHCVLGRMEEA 212
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P T N L++ C + ++ EA +L+ M +PD+ SYS +I +
Sbjct: 180 VLNEMTRSGFIPSIVTYNALINGHCVLGRMEEAIGLLQDMVGKGVLPDVVSYSTIISGFA 239
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIG 276
++ + A +M EM+ ++P + L R + +A +M E L K P
Sbjct: 240 RNQELDRAFQMKVEMI-GKSVLPDAVTYSSLIQGLCEQRRLTEACDMFQEMLTIKLPPDE 298
Query: 277 FQGYEVVVEGCLECREYILAGKTVMG--MTERGFIPYIKVRQKVVEGL 322
F Y ++ C+E L + M ++GF+P ++ GL
Sbjct: 299 FT-YTTLINA--YCKEGDLNKALHLHDEMIQKGFLPDAVTYNVLINGL 343
Score = 44.7 bits (104), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 74/177 (41%), Gaps = 3/177 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +++L+EM GY PD T N LV+ C +A + M P++
Sbjct: 65 RDGRLKETSEVLVEMSRKGYVPDEVTYNTLVNGYCKEGNFHQALVLHAEMVRNGLSPNVV 124
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I +M A N A+E +M + GL P + + + +A ++
Sbjct: 125 TYTSLINSMCKAGNLNRAMEFFDQMHVR-GLCPNERTYTTIINGFAQQGLLDEAYRVLNE 183
Query: 268 LERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+ R G Y ++ G C+ R G + M +G +P + ++ G A
Sbjct: 184 MTRSGFIPSIVTYNALINGHCVLGRMEEAIG-LLQDMVGKGVLPDVVSYSTIISGFA 239
>gi|242046988|ref|XP_002461240.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
gi|241924617|gb|EER97761.1| hypothetical protein SORBIDRAFT_02g043430 [Sorghum bicolor]
Length = 551
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS V +L +M G PD CN V LC ++L +A +L+ M
Sbjct: 237 SRWISALCQSDRIELVERLLADMDKFGCFPDIWACNIYVDYLCKQNRLHDALMMLENMEM 296
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
PD+ +Y+ ++G + ++ +AVE+ +EM + G+ P
Sbjct: 297 RGTGPDVVTYTTIVGCLCDNKQFAEAVELWEEM-MRRGVKP 336
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 48/95 (50%), Gaps = 1/95 (1%)
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+S+LC D++ ++L M C PD+ + +I + + + +DA+ M++ M + G
Sbjct: 240 ISALCQSDRIELVERLLADMDKFGCFPDIWACNIYVDYLCKQNRLHDALMMLENMEMR-G 298
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
P + L N++ +AVE+ E + R+G
Sbjct: 299 TGPDVVTYTTIVGCLCDNKQFAEAVELWEEMMRRG 333
>gi|356533316|ref|XP_003535211.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Glycine max]
Length = 918
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 97/227 (42%), Gaps = 6/227 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I RSGC+P L +E+R +++VA IL +M G P+ T L+
Sbjct: 573 ALEIFDMMRRSGCIPTVHTYNALILGLVEKRKMAKAVA-ILDQMNVAGVGPNEHTYTTLM 631
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ +A + + + D+ +Y ++ + + + A+ + KEM
Sbjct: 632 QGYASLGDTEKAFQYFSVLRNEGLEIDVYTYEALLKSCCKSGRMQSALAVTKEMSAKN-- 689
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR V + A R ++W+A ++++ + ++G Y V C + + A
Sbjct: 690 IPRNTFVYNILIDGWARRGDVWEAADLMQQMRKEGVLPDIHTYTSFVNACCKAGDMQKAT 749
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGL--AGVGEWKLATVVRQRFAELK 342
+ + M G P +K ++ G A + E L+ + AELK
Sbjct: 750 EIIQEMEAFGIKPNLKTYTTLINGWARASMPEKALSCFEEMKLAELK 796
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 66/166 (39%), Gaps = 1/166 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK G + T + L++ + A V + + PD+ Y+ +I A
Sbjct: 475 MKMSGIKHNMKTYSMLINGFLKLKDWANAFSVFEDFTKDGLKPDVVLYNNIITAFCGMSN 534
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A+ M+K+M P + + EM +A+E+ + + R GC Y
Sbjct: 535 MDRAICMVKQMQKER-YRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYN 593
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G +E R+ A + M G P +++G A +G+
Sbjct: 594 ALILGLVEKRKMAKAVAILDQMNVAGVGPNEHTYTTLMQGYASLGD 639
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/180 (18%), Positives = 76/180 (42%), Gaps = 2/180 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M+ Y P T ++ ++ A ++ M + C+P + +Y+ +I +
Sbjct: 541 MVKQMQKERYRPTTRTFLPIIHGFARAGEMRRALEIFDMMRRSGCIPTVHTYNALILGLV 600
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK AV ++ +M + G+ P + + + + KA + L +G I
Sbjct: 601 EKRKMAKAVAILDQMNV-AGVGPNEHTYTTLMQGYASLGDTEKAFQYFSVLRNEGLEIDV 659
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
YE +++ C + A M+ + V +++G A G+ W+ A +++Q
Sbjct: 660 YTYEALLKSCCKSGRMQSALAVTKEMSAKNIPRNTFVYNILIDGWARRGDVWEAADLMQQ 719
>gi|414588908|tpg|DAA39479.1| TPA: chloroplast RNA splicing4 [Zea mays]
Length = 1438
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 81/199 (40%), Gaps = 37/199 (18%)
Query: 150 CQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
C + VA D+L E++ G PD T N L+S+ L +A V + M ++EC PDL +
Sbjct: 271 CLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEDMIASECRPDLWT 330
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIK-------- 247
Y+ ++ K +A + +E+V G MP ++G V K
Sbjct: 331 YNAMVSVHGRCGKAEEAERLFRELV-EKGFMPDAITYNSLLYAFAKEGNVDKVEHTCEQL 389
Query: 248 VAAALRANREMWK--------------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
V A + N + AV + + + GC Y V+++ +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAMGCTPDAVTYTVMIDSLGKMNRI 449
Query: 294 ILAGKTVMGMTERGFIPYI 312
AGK + MT+ G P +
Sbjct: 450 AEAGKVLEDMTDAGLKPTL 468
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 44/80 (55%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+++G PD T ++ SL ++++ EA KVL+ M+ A P L ++S +I A +
Sbjct: 423 EMRAMGCTPDAVTYTVMIDSLGKMNRIAEAGKVLEDMTDAGLKPTLIAFSALICAYAKGG 482
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+ DA M+ + G+ P
Sbjct: 483 RRADAENTFDCMIAS-GVKP 501
>gi|302759535|ref|XP_002963190.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
gi|300168458|gb|EFJ35061.1| hypothetical protein SELMODRAFT_79513 [Selaginella moellendorffii]
Length = 573
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 103/239 (43%), Gaps = 14/239 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--AD 157
+ Y LL + L L AL + +R GCVP ++ + + C + V A
Sbjct: 220 VTYSSLL-HGLCKAGDLDQALDLFRRMTSKGCVP----NVVTYTTLIHGLCAAHKVDAAR 274
Query: 158 ILL-EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L+ EM + PD + N L+ C + ++ EA ++ K M++ C+PD +Y+ ++
Sbjct: 275 LLMDEMTATCCPPDTVSYNALLDGYCRLGRIEEAKQLFKEMATKSCLPDRITYTCLVRGF 334
Query: 217 STARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
A + +A +++ M G+ P I VA RA R + A + E + R P
Sbjct: 335 CNASRLEEARFLLENMKTAAGIDPDVVTYSIVVAGYSRAKRFVEAAEFIQEMIARNVAPN 394
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE----WKL 330
Y +++G + A + + M + P + V+ L +G+ WKL
Sbjct: 395 AVT-YSSLIDGLCKAGRVDHAMEVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKL 452
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 53/105 (50%), Gaps = 1/105 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVE 227
P+ T N +V+ LC +A +VLK M + V PDL +YS VI + + A E
Sbjct: 39 PNERTYNVVVNGLCKARLTSKAYEVLKEMRDGKSVAPDLVTYSTVINGFCKQGEMDRACE 98
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+++EMV G+ P V L + +M +A EM+ ++ KG
Sbjct: 99 ILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKG 143
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 75/167 (44%), Gaps = 1/167 (0%)
Query: 157 DILLEMKS-IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+IL EM + G PD T +V LC ++ A ++++ M PD ++S +I
Sbjct: 98 EILREMVTRDGIAPDVVTYTSVVDGLCRDGKMDRACEMVREMKLKGVEPDKFTFSALITG 157
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
ARK ++A+++ KE++ + P + + + KA++M+ +E + C
Sbjct: 158 WCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVMEGRKCVP 217
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ G + + A MT +G +P + ++ GL
Sbjct: 218 NVVTYSSLLHGLCKAGDLDQALDLFRRMTSKGCVPNVVTYTTLIHGL 264
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 71/159 (44%), Gaps = 8/159 (5%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M + P GT N ++ +LC + + EA K+L M++ P + +Y+ ++
Sbjct: 416 EVLKNMVNKRVEPSVGTFNSVIGALCRLGDMDEAWKLLVAMAAHGLEPGMVTYTTLLEGF 475
Query: 217 STARKTNDAVEMMKEM-------VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
S + A E+ + M L+P Q + +A RE+ KA+ ++E L
Sbjct: 476 SRTGRMEIAYELFEVMRKKAKKSSSAANLVPEQAFSALIRGLCKA-REIDKAMAVVEELR 534
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ C + +V+G L AGK + +++ G
Sbjct: 535 SRECEPAEEDCLAIVDGLLRAGRTEEAGKLINSISKVGL 573
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 66/148 (44%), Gaps = 5/148 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSI----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
SA + C ++ V + L K I + PD T L+ C L +A K+L M
Sbjct: 152 SALITGWCNARKVDEALKLYKEILTSSSWKPDVVTYTALIDGFCKSGNLEKAMKMLGVME 211
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
+CVP++ +YS ++ + A + A+++ + M + G +P + L A ++
Sbjct: 212 GRKCVPNVVTYSSLLHGLCKAGDLDQALDLFRRMT-SKGCVPNVVTYTTLIHGLCAAHKV 270
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEG 286
A +++ + CP Y +++G
Sbjct: 271 DAARLLMDEMTATCCPPDTVSYNALLDG 298
>gi|359488050|ref|XP_002263119.2| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Vitis vinifera]
Length = 686
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 90/232 (38%), Gaps = 6/232 (2%)
Query: 113 LHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
+ L AL+ R L P V +LL S A ++ +V + +M S G PD
Sbjct: 128 FNTLDDALSSFNRMLHMHPPPSTVDFTKLLTSIAKMK---HYSTVLSLSTQMDSFGIPPD 184
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T N L++S C + +L A VL + C PD +++ +I + K +A+ +
Sbjct: 185 VYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTTFNTLIRGLCVEGKIGEALHLFD 244
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+ + G P + L A+ ++ + +K C Y +++ +
Sbjct: 245 KTI-GEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIIDSLCKD 303
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
R+ A M +G P I ++ L + EWK T + K
Sbjct: 304 RQVTEAFNLFSEMITKGISPDIFTYNSLIHALCNLCEWKHVTTLLNEMVNSK 355
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 99/231 (42%), Gaps = 16/231 (6%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L L A ++L + L+ GC P + + C + +
Sbjct: 183 PDVYTLNILINSFCHLRRLGYAFSVLAKLLKLGCQPDNTT----FNTLIRGLCVEGKIGE 238
Query: 158 IL-LEMKSIG--YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L L K+IG + PD T L++ LC + A ++L+ M C P++ +Y+ +I
Sbjct: 239 ALHLFDKTIGEGFQPDVVTYGTLMNGLCKVGNTSAAIRLLRSMVQKNCRPNVIAYNTIID 298
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKG 272
++ R+ +A + EM+ G+ P + AL N WK V + E + K
Sbjct: 299 SLCKDRQVTEAFNLFSEMITK-GISPDIFTYNSLIHAL-CNLCEWKHVTTLLNEMVNSKI 356
Query: 273 CPIGFQGYEVVVEGCLECREYI--LAGKTVMGMTERGFIPYIKVRQKVVEG 321
P + VV+ C+E + +A V M +RG P + +++G
Sbjct: 357 MP-NVVVFSTVVDAL--CKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDG 404
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/206 (22%), Positives = 86/206 (41%), Gaps = 11/206 (5%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ +A D++ M G PD T L+ C ++ EA KV M
Sbjct: 364 STVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTALMDGHCLRSEMDEAVKVFDTMVH 423
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
CVP++ SY+I+I ++ + A+ ++++M L GL+ + L +
Sbjct: 424 KGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-GLIADTVTYNTLIHGLCHVGRLQ 482
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQK 317
A+ + + G Y ++++ C+ + LA V+ + I V
Sbjct: 483 HAIALFHEMVASGQIPDLVTYRILLD--YLCKNHHLAEAMVLLKAIEGSNLDADILVYNI 540
Query: 318 VVEGLAGVGEWKLATVVRQRFAELKS 343
++G+ GE + A R F+ L S
Sbjct: 541 AIDGMCRAGELEAA---RDLFSNLSS 563
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 87/197 (44%), Gaps = 18/197 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSI-GYHPDCGTCN 175
A+ + + GCVP + +L + + CQ Q + A LLE S+ G D T N
Sbjct: 414 AVKVFDTMVHKGCVPNVRSYNILINGY----CQIQRMDKAMGLLEQMSLQGLIADTVTYN 469
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM--- 232
L+ LC + +L A + M ++ +PDL +Y I++ + +A+ ++K +
Sbjct: 470 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 529
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L+ ++ I + RA E+ A ++ L KG + Y +++ G C+
Sbjct: 530 NLDADILVYN---IAIDGMCRAG-ELEAARDLFSNLSSKGLQPDVRTYNIMIHGL--CKR 583
Query: 293 YIL--AGKTVMGMTERG 307
+L A K M E G
Sbjct: 584 GLLDEANKLFRKMDENG 600
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/161 (24%), Positives = 72/161 (44%), Gaps = 15/161 (9%)
Query: 77 HRIKVIDEMLESF-IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
H I + EM+ S IP + Y LL Y ++ H L A+ +L+ S
Sbjct: 483 HAIALFHEMVASGQIP------DLVTYRILLDYLCKN-HHLAEAMVLLKAIEGSNL---- 531
Query: 136 QIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+L+ + ++ C++ ++ D+ + S G PD T N ++ LC L EA K
Sbjct: 532 DADILVYNIAIDGMCRAGELEAARDLFSNLSSKGLQPDVRTYNIMIHGLCKRGLLDEANK 591
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ + M C D Y+ +I + +T A ++++EM+
Sbjct: 592 LFRKMDENGCSRDGCIYNTIIRGFLRSNETFGATQLLQEML 632
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 68/174 (39%), Gaps = 1/174 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L+ LC L EA +LK + + D+ Y+I
Sbjct: 482 QHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGSNLDADILVYNIA 541
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + A ++ + + GL P + L + +A ++ ++ G
Sbjct: 542 IDGMCRAGELEAARDLFSNLS-SKGLQPDVRTYNIMIHGLCKRGLLDEANKLFRKMDENG 600
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
C Y ++ G L E A + + M GF + +VE L+ G
Sbjct: 601 CSRDGCIYNTIIRGFLRSNETFGATQLLQEMLAEGFSADVSTTTLIVEMLSDDG 654
>gi|357124917|ref|XP_003564143.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Brachypodium distachyon]
Length = 1285
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 44/80 (55%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
S D+LLE++ +G PD T N L+S+ L +A V + M ++EC PDL +Y+ ++
Sbjct: 118 SAFDLLLEVRQVGLRPDVITYNTLISACSQGSNLDDAVAVFEEMMASECRPDLWTYNAMV 177
Query: 214 GAMSTARKTNDAVEMMKEMV 233
K DA M +E+V
Sbjct: 178 SVHGRCGKAQDAERMFRELV 197
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 66/133 (49%), Gaps = 1/133 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+++G PD T L+ SL +D++ +A KVL+ M+ A P L ++S +I A +
Sbjct: 265 EMRALGCTPDAVTYTVLIDSLGKMDRISDAGKVLEEMADAGLKPTLVTFSALICAYAKGG 324
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +AV MV + G+ P + + + + + +M K + + + + G Y
Sbjct: 325 RREEAVRTFSHMVAS-GVKPDRLAYLVMLDIIARSGDMRKLMALYQTMMNDGYRPDNALY 383
Query: 281 EVVVEGCLECREY 293
+V++ + EY
Sbjct: 384 QVMLAALAKGNEY 396
>gi|242067235|ref|XP_002448894.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
gi|241934737|gb|EES07882.1| hypothetical protein SORBIDRAFT_05g000986 [Sorghum bicolor]
Length = 796
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 84/213 (39%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + Q+ + G P L +L Q + V +L EM + G PDC T L+
Sbjct: 258 AEGVFQQMIDKGVRPNIVTYTCLIHGYLSIG-QWKEVVRMLKEMSAHGLEPDCFTYGLLL 316
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + EA K+ M PD+ Y I++ +T ++ + MV N G+
Sbjct: 317 DYLCKKGKCTEARKLFDSMIRKGIKPDVSIYGIILHGYATKGALSEMHSFLDLMVGN-GI 375
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + V A + +A+++ + ++G Y +++ + A
Sbjct: 376 SPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAEL 435
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G P I V +V GL + +W+ A
Sbjct: 436 KFNQMINEGVAPNIVVFTSLVYGLCTIDKWEKA 468
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 49/265 (18%), Positives = 112/265 (42%), Gaps = 9/265 (3%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALA 121
+PN + F F + +I E ++ F +R + P + L L L + A
Sbjct: 376 SPNHYIFNIVFCAFAKKAMIGEAMDIFNKMRQQGLSPNVVNYATLIDALCKLGRVDDAEL 435
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCNYLV 178
+ + G P +++ ++ + C + + ++ EM + G HP+ N ++
Sbjct: 436 KFNQMINEGVAP----NIVVFTSLVYGLCTIDKWEKAGELFFEMVNQGIHPNVVFFNTIM 491
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+LC ++++A +++ M PD+ SY+ +I KT++A +++ +++L++GL
Sbjct: 492 CNLCTEGRVMKAQRLIDLMERVGTRPDIISYNALIRGHCLVGKTDEASKLL-DIMLSVGL 550
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + + A + + + G Y ++ G + R + A +
Sbjct: 551 KPNECTYNTLLHGYCRDGRIDDAYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEAKE 610
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLA 323
+ M G I ++ GL+
Sbjct: 611 LYLNMITSGKQWSIYTYNIILNGLS 635
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 3/156 (1%)
Query: 177 LVSSLCAIDQLVEAAKVL-KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC ++ EA VL + MS C P++ SY+ ++ + +A+E++ M
Sbjct: 136 LLKGLCDAKRVGEAMGVLLRRMSELGCTPNVVSYNTLLKGFCDENRAEEALELLHMMADG 195
Query: 236 M--GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
P V ++ KA + + +G P Y +V++G + +
Sbjct: 196 QVRSCPPNLVSYNTVINGFFTEGQVDKAYNLFLDMTDQGIPPNVVTYTIVIDGLCKAQVV 255
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A M ++G P I ++ G +G+WK
Sbjct: 256 DRAEGVFQQMIDKGVRPNIVTYTCLIHGYLSIGQWK 291
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 70/155 (45%), Gaps = 2/155 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++ Q L +G PV + + R S++ ++ L M + G T N ++
Sbjct: 573 AYSVFQEMLSNGITPVVVTYNTILHGLFKTRRFSEA-KELYLNMITSGKQWSIYTYNIIL 631
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ L + + EA K+ + + S + D+ +++I+IGA+ + DA+ + + N GL
Sbjct: 632 NGLSKNNCVDEALKMFQSLCSKDLQVDIITFNIMIGALLKDGRKEDAMNLFATISAN-GL 690
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+P +A L + + M +E+ GC
Sbjct: 691 VPDVTTYRLIAENLIEEGSLEEFDGMFSEMEKSGC 725
>gi|302774715|ref|XP_002970774.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
gi|300161485|gb|EFJ28100.1| hypothetical protein SELMODRAFT_94312 [Selaginella moellendorffii]
Length = 497
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 95/208 (45%), Gaps = 9/208 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
++A+L+R + G P ++ S+ + C+S + + +LL +KS G PD +
Sbjct: 272 SIALLRRAVSGGIKP----DVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVILYS 327
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC ++ EA + + M+ C D+ +YS +I + A + ++A ++ MV
Sbjct: 328 TLIDGLCKAGKVDEAFDLYEVMTGDGCDADVVTYSTLIDGLCKAGRVDEAHLLLARMV-R 386
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYI 294
MG P + L + +A+E++E +ER C Y +++ G C R
Sbjct: 387 MGTPPSTMTYNSLIKGLCDLNHLDEAIELVEEMERSNCAPSAVTYNILIHGMCRMERVDS 446
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A M + G IP ++EGL
Sbjct: 447 AALDYFQEMIDNGVIPDHITYSILLEGL 474
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 74/145 (51%), Gaps = 9/145 (6%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
L RS I+++ L++ L + AL R + C P ++ S ++ C+
Sbjct: 72 LDRRSHDVISFNILVT-GLCRAGKIETALEFF-RKMDDRCSP----NVITYSVLIDGLCK 125
Query: 152 SQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ V+ ++L MK+ G PD T LV LC ++ A +VL+ M A CVP+L +
Sbjct: 126 ANRVSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVT 185
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMV 233
Y+ ++ + AR+ +DA+ +M++M
Sbjct: 186 YNSLLHGLCRARRVSDALALMRDMT 210
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/253 (20%), Positives = 107/253 (42%), Gaps = 8/253 (3%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
R I+ LE F + R P + +L L + + A+ +L+ GC P
Sbjct: 91 RAGKIETALEFFRKMDDRCSPNVITYSVLIDGLCKANRVSQAVELLESMKARGCSP---- 146
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
++ + ++ C+ VA ++L EM G P+ T N L+ LC ++ +A ++
Sbjct: 147 DVITYTILVDGLCKESKVAAAWEVLREMLDAGCVPNLVTYNSLLHGLCRARRVSDALALM 206
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M+ C P++ +Y +I + + DA M+ +M+ + G P + + L
Sbjct: 207 RDMTCRGCTPNVVTYGTLIDGLCKVGRVKDACAMLADMI-DKGGTPDLMIYNMLINGLCK 265
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
++ +++ ++ G Y V+ G A + ++ + RG P + +
Sbjct: 266 ADQVDESIALLRRAVSGGIKPDVVTYSSVIYGLCRSNRLDEACRLLLYVKSRGCPPDVIL 325
Query: 315 RQKVVEGLAGVGE 327
+++GL G+
Sbjct: 326 YSTLIDGLCKAGK 338
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 83/195 (42%), Gaps = 36/195 (18%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G P+ T N L+ LC ++ A ++ + M S EC P + +Y+ ++ + K
Sbjct: 1 MRDHGCEPNVVTYNSLIDGLCKNNEPDRAQELFEHMKSVECSPSMVTYNTLLDGLFRTGK 60
Query: 222 TNDAVEMMKEM------------VLNMGLMPRQGMV----------------------IK 247
A+ + +EM +L GL R G + +
Sbjct: 61 LERAMALFQEMLDRRSHDVISFNILVTGLC-RAGKIETALEFFRKMDDRCSPNVITYSVL 119
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ +ANR + +AVE++E ++ +GC Y ++V+G + + A + + M + G
Sbjct: 120 IDGLCKANR-VSQAVELLESMKARGCSPDVITYTILVDGLCKESKVAAAWEVLREMLDAG 178
Query: 308 FIPYIKVRQKVVEGL 322
+P + ++ GL
Sbjct: 179 CVPNLVTYNSLLHGL 193
>gi|449461475|ref|XP_004148467.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 775
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+++ EM +G P T L+ C + + A K+L M D+++Y +I
Sbjct: 527 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDG 586
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
R A E++ E+ GL P + + + + + +A+++ + + +G P
Sbjct: 587 FCKRRDMKSAHELLNEL-RGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 645
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y +++G L+ + A M +G +P + ++ GL G+++ A
Sbjct: 646 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENA 701
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+DI EM S G PD L++ LC Q A K+L+ M+ +P + Y+ +I
Sbjct: 667 SDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAG 726
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+A + EM L+ GL+P
Sbjct: 727 HFKEGNLQEAFRLHDEM-LDRGLVPDN 752
>gi|242090439|ref|XP_002441052.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
gi|241946337|gb|EES19482.1| hypothetical protein SORBIDRAFT_09g019485 [Sorghum bicolor]
Length = 548
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 87/212 (41%), Gaps = 8/212 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
AL +L L GC P + A+ C S D+L M + G+ P T N
Sbjct: 187 ALGVLDLMLEEGCQPNAHTYTPILHAY----CTSGMIHEAKDLLETMVAAGFAPSTATYN 242
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV +LC E K+L+ S+ PD +YS + + + + ++ ++ +M L+
Sbjct: 243 VLVEALCKACAFEEVDKLLEESSAKGWTPDTITYSTYMDGLCKNGRVDKSLALVDKM-LS 301
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+GL P + + + + W A ++E G + Y V+ + R ++
Sbjct: 302 VGLRPNEITLNILLDGVCRRSTAWAAKCLLECSAEIGWHVNVVNYNTVMRRLCDERRWLA 361
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K + M ++G P V+ L +G+
Sbjct: 362 VVKLFVDMVKKGIAPNSWTFSIVIHSLCKLGK 393
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
ALA+L G VP +L + R + +++ M + G PD T + L+
Sbjct: 116 ALAVLNAMAADGVVPDTAACTVLVGVYACRLHWFDAAYEVVRWMAANGVAPDVVTYSTLI 175
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
S LC+ ++ EA VL M C P+ +Y+ ++ A T+ ++A ++++ MV
Sbjct: 176 SGLCSAGRVAEALGVLDLMLEEGCQPNAHTYTPILHAYCTSGMIHEAKDLLETMV 230
>gi|15218241|ref|NP_172439.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75097039|sp|O04491.1|PPR26_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g09680
gi|2160161|gb|AAB60724.1| F21M12.7 gene product [Arabidopsis thaliana]
gi|332190358|gb|AEE28479.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 607
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 4/194 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ + C+ +++D + E+ P + N L++ C + L E ++ M +
Sbjct: 247 MNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD+ +YS +I A+ K + A + EM GL+P + + N E+
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMC-KRGLIPNDVIFTTLIHGHSRNGEIDLMK 365
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E + + KG Y +V G + + + A V GM RG P +++G
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
Query: 323 AGVGEWKLATVVRQ 336
G+ + A +R+
Sbjct: 426 CRGGDVETALEIRK 439
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 2/242 (0%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R+RP + L L + + A + + G +P I L R +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH-SRNGEI 361
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +M S G PD N LV+ C LV A ++ GM PD +Y+ +
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A+E+ KEM N + R G V + R + + E L R G
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREML-RAG 480
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++++ + + K + M G +P + ++ GL +G+ K A
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNAD 540
Query: 333 VV 334
++
Sbjct: 541 ML 542
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L+ LR+G P ++ A+ ++ +Q+ +L EM+S G+ P T N L++ LC
Sbjct: 473 LREMLRAGIKPDDVTYTMMMDAFC-KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ Q+ A +L M + VPD +Y+ ++
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 150 CQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ V D L EM G PD T ++ + C K+LK M S VP +
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV 520
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y++++ + + +A +M+ + +LN+G++P
Sbjct: 521 VTYNVLLNGLCKLGQMKNA-DMLLDAMLNIGVVP 553
>gi|224130702|ref|XP_002328355.1| predicted protein [Populus trichocarpa]
gi|222838070|gb|EEE76435.1| predicted protein [Populus trichocarpa]
Length = 608
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 32/224 (14%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHP 169
L+ + A++IL + + G P +A + C + ++ EM G+ P
Sbjct: 136 LNHVDFAVSILGKMFKLGIHPTAST----FNALINGLCNEGKIKEAVELFNEMVRRGHEP 191
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ + N +++ LC A V K M C PD+ +Y+ +I ++ R NDA+E +
Sbjct: 192 NVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAMEFL 251
Query: 230 KEMVLNMGLMPR--------QGMVI--KVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
EM L+ G+ P G I ++ A R +EM M + +
Sbjct: 252 SEM-LDRGIPPNVFTYNCMVHGFCILGQLNEATRLFKEMVGRDVMPDTVT---------- 300
Query: 280 YEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQKVVEG 321
++V+G C+E +++ ++ MTE+G P I +++G
Sbjct: 301 LTILVDGL--CKEGMVSEARLVFETMTEKGVEPNISTYNALMDG 342
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/215 (22%), Positives = 88/215 (40%), Gaps = 4/215 (1%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA R +R P V + L S ++ Q +V + +M G + + N L
Sbjct: 72 ALASFYRMVRMNPRPSVAEFGKFLGS--FAKKKQYSTVVSLCNQMDLFGVTHNVYSLNVL 129
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ LC ++ + A +L M P +++ +I + K +AVE+ EMV G
Sbjct: 130 INCLCRLNHVDFAVSILGKMFKLGIHPTASTFNALINGLCNEGKIKEAVELFNEMV-RRG 188
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + L AV++ + +E+ GC Y +++ + R A
Sbjct: 189 HEPNVISYNTIINGLCKTGNTSMAVDVFKKMEQNGCKPDVVTYNTIIDSLCKDRLVNDAM 248
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ + M +RG P + +V G +G+ AT
Sbjct: 249 EFLSEMLDRGIPPNVFTYNCMVHGFCILGQLNEAT 283
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G P+ T N L+ C + EA KV + M C P + SY+I+I +R+
Sbjct: 324 MTEKGVEPNISTYNALMDGYCLQRLMNEAKKVFEIMIRQGCAPGVHSYNILINGFCKSRR 383
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A ++ EM + L P + L +A+ + + + G Y
Sbjct: 384 MDEAKSLLAEMY-HKALNPDTVTYSTLMQGLCQFGRPKEALNIFKEMCSYGLLPNLVTYS 442
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++++G + A K + M E+ P I ++EG+ G+ ++A ++ F++L
Sbjct: 443 ILLDGFCKHGHLDEALKLLKSMQEKKLEPNIVHHTILIEGMFIAGKLEVA---KELFSKL 499
>gi|297797589|ref|XP_002866679.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297312514|gb|EFH42938.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 915
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 66/308 (21%), Positives = 130/308 (42%), Gaps = 49/308 (15%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++ T + V + ++ + + EA +P+ F++ S + K +D + F
Sbjct: 217 NIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVF 276
Query: 90 --IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+PL+ R ++AY +L+ H L CV E
Sbjct: 277 KEMPLKGCRRNEVAYTHLI-------HGL--------------CV--------------E 301
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR D+ ++MK +P T L+ +LC ++ EA ++K M P++
Sbjct: 302 RRIDE--AMDLFVKMKDDDCYPTVRTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIH 359
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEM 264
+Y+++I ++ + K A E++ +M L GLMP VI A + R M + A+++
Sbjct: 360 TYTVLIDSLCSQCKLEKARELLGQM-LEKGLMPN---VITYNALINGYCKRGMIEDALDV 415
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLA 323
+E +E + + Y +++G C+ + V+ M ER +P + +++G
Sbjct: 416 VELMESRNLRPNTRTYNELIKG--YCKRNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQC 473
Query: 324 GVGEWKLA 331
G + A
Sbjct: 474 RSGNFDSA 481
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 93/192 (48%), Gaps = 21/192 (10%)
Query: 52 ELLGSFEEACQNPNPFSF---LSNFPQNHRIK-VID--EMLESFIPLRPRSRPKIAYDYL 105
ELLG E PN ++ ++ + + I+ +D E++ES LRP +R Y+ L
Sbjct: 379 ELLGQMLEKGLMPNVITYNALINGYCKRGMIEDALDVVELMESR-NLRPNTR---TYNEL 434
Query: 106 L-SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLE 161
+ Y +++H A+ +L + L +P ++ ++ ++ +C+S S +L
Sbjct: 435 IKGYCKRNVHK---AMGVLNKMLERKVLP----DVVTYNSLIDGQCRSGNFDSAYRLLSL 487
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD T ++ SLC ++ EA + + + +P++ Y+ +I A K
Sbjct: 488 MNDRGLVPDPWTYTSMIDSLCKSKRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGK 547
Query: 222 TNDAVEMMKEMV 233
N+A M+++M+
Sbjct: 548 VNEAHLMLEKML 559
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 54/266 (20%), Positives = 116/266 (43%), Gaps = 15/266 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+ ++ EM E I +P I +L +L S L A +L + L G +P
Sbjct: 343 LNLVKEMEEKGI------KPNIHTYTVLIDSLCSQCKLEKARELLGQMLEKGLMP----N 392
Query: 139 LLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ +A + C+ + D++ M+S P+ T N L+ C + + +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDALDVVELMESRNLRPNTRTYNELIKGYCKRN-VHKAMGVLN 451
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + +PD+ +Y+ +I + + A ++ M + GL+P + +L +
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN-DRGLVPDPWTYTSMIDSLCKS 510
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ + +A ++ + LE+K Y +++G + + A + M + +P
Sbjct: 511 KRVEEACDLFDSLEQKDVIPNVVMYTALIDGYCKAGKVNEAHLMLEKMLSKNCLPNSLTF 570
Query: 316 QKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K AT++ ++ ++
Sbjct: 571 NALIHGLCTDGKLKEATLLEEKMVKI 596
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 74/174 (42%), Gaps = 18/174 (10%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G PD T + + C +L +A ++ M PDL +YS +I
Sbjct: 627 QMLSSGTKPDAHTYTTFIQTYCREGRLQDAEDMVAKMKENGVSPDLFTYSSLIKGYGDLG 686
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+TN A ++K M + G P Q + + L +EM ++ + KG G
Sbjct: 687 RTNSAFVVLKRM-HDTGCEPSQHTFLSLIKHL---------LEM-KYGKVKGGEPGV--- 732
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
V+ + E+ + + + M E G P K +K++ G+ +G ++A V
Sbjct: 733 -CVMSNMM---EFDIVVELLEKMVEHGVTPNAKSYEKLMLGICEIGNLRVAEKV 782
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 58/266 (21%), Positives = 101/266 (37%), Gaps = 27/266 (10%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
+P ++ D +L + L A Q+ L SG P + R + Q
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYRRFQQMLSSGTKPDAHTYTTFIQTYC-REGRLQDAE 657
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES-------- 208
D++ +MK G PD T + L+ + + A VLK M C P +
Sbjct: 658 DMVAKMKENGVSPDLFTYSSLIKGYGDLGRTNSAFVVLKRMHDTGCEPSQHTFLSLIKHL 717
Query: 209 ----YSIVIGA------MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
Y V G MS + + VE++++MV G+ P K+ + +
Sbjct: 718 LEMKYGKVKGGEPGVCVMSNMMEFDIVVELLEKMV-EHGVTPNAKSYEKLMLGICEIGNL 776
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC----REYILAGKTVMGMTERGFIPYIKV 314
A ++ + +++K G E+V L C ++ A K V M G +P ++
Sbjct: 777 RVAEKVFDHMQQKE---GISPSELVFNALLSCCCKLEKHNEAAKVVDDMICVGHLPQLES 833
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++ L GE + T V Q +
Sbjct: 834 CKILICRLYKKGEKERGTSVFQNLLQ 859
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 68/165 (41%), Gaps = 1/165 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +EM P+ T N +V+ C + + EA + + + A PD +Y+ +I
Sbjct: 205 VYMEMLEDKVCPNIYTYNKMVNGYCKVGNVEEANQYVSMIVEAGLDPDFFTYTSLIMGYC 264
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A ++ KEM L G + + L R + +A+++ ++ C
Sbjct: 265 QRKDLDSAFKVFKEMPLK-GCRRNEVAYTHLIHGLCVERRIDEAMDLFVKMKDDDCYPTV 323
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ Y V+++ A V M E+G P I +++ L
Sbjct: 324 RTYTVLIKALCGSERKSEALNLVKEMEEKGIKPNIHTYTVLIDSL 368
>gi|255577256|ref|XP_002529510.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531026|gb|EEF32879.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 804
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 51/252 (20%), Positives = 114/252 (45%), Gaps = 7/252 (2%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-V 134
++ +I++ +ESF ++ +P + Y+ +L ++ + LAL I R L+ C+P +
Sbjct: 138 KMDMIEKAVESFEMMKDFDCKPDVFTYNTVLHVMVRK-EVVLLALGIYNRMLKLNCLPNI 196
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+L+ + + ++Q+ + EM P+ T ++S LC + A ++
Sbjct: 197 ATFSILIDG--MCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRLF 254
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C+PD +Y+ ++ + ++A+ ++K + ++ +QG + RA
Sbjct: 255 IAMKDHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLFRA 314
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
R V + E P Y ++++G + ++ A + + MTERG +P
Sbjct: 315 RRFEDAQVWYRKMTEHNIKP-DVILYTIMMKGLSKAGKFKDALRLLNEMTERGLVPDTHC 373
Query: 315 RQKVVEGLAGVG 326
+++G +G
Sbjct: 374 YNALIKGYCDLG 385
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/163 (20%), Positives = 74/163 (45%), Gaps = 1/163 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T + L+ +C + A ++ M+ +P+ +Y+I+I + A+K + A +
Sbjct: 194 PNIATFSILIDGMCKSGKTQNALQMFDEMTQRRILPNKITYTIIISGLCQAQKADVAYRL 253
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M + G +P + + +A+ ++++ E+ + QGY +++G
Sbjct: 254 FIAMK-DHGCIPDSVTYNALLHGFCKLGRVDEALGLLKYFEKDRYVLDKQGYSCLIDGLF 312
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
R + A MTE P + + +++GL+ G++K A
Sbjct: 313 RARRFEDAQVWYRKMTEHNIKPDVILYTIMMKGLSKAGKFKDA 355
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHP------- 169
A I + GC P ++ +A ++ C++ ++ A +L IG +P
Sbjct: 425 AQQIFNEMEKHGCYP----SVVTFNALIDGFCKAGNIEKAQLLFYKMEIGRNPSLFLRLS 480
Query: 170 -------DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
D + +V LC +++A +L ++ + P++ +Y+I+I A
Sbjct: 481 QGANRVLDTASLQTMVEQLCDSGLILKAYNILMQLTDSGFAPNIITYNILIHGFCKAGNI 540
Query: 223 NDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGC-PI 275
N A ++ KE+ L GL P G +I L ANRE A +++ + + GC PI
Sbjct: 541 NGAFKLFKELQLK-GLSPDSVTYGTLIN--GLLSANREE-DAFTVLDQILKNGCTPI 593
>gi|255660962|gb|ACU25650.1| pentatricopeptide repeat-containing protein [Verbena officinalis]
Length = 376
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I ++ A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKIQLA 288
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKIQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|296085490|emb|CBI29222.3| unnamed protein product [Vitis vinifera]
Length = 826
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 49/218 (22%), Positives = 92/218 (42%), Gaps = 4/218 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE-RRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+A L SG V V + LL+ + R ++ + + + G P TC +L
Sbjct: 160 AMADLNEVGESG-VAVAAVDLLIHVYCTQFRNVGFRNAIGVFRFLANKGVFPTVKTCTFL 218
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+SSL ++L ++ V + M PD+ +S I A K DA+++ +M +G
Sbjct: 219 LSSLVKANELEKSYWVFETMRQG-VSPDVYLFSTAINAFCKGGKVEDAIQLFFDME-KLG 276
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ P + L + + +A E + + G Y V++ G ++ ++ A
Sbjct: 277 VSPNVVTYNNLIHGLCKHGNLDEAFRFKEKMVKDGVNATLITYSVLINGLMKLEKFNEAN 336
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
+ E+GF P V +++G +G A +R
Sbjct: 337 SVLKETLEKGFTPNEVVYNTLIDGYCKMGNLGDALRIR 374
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 1/179 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ +C I +L EA + S + VP++ +Y ++I A
Sbjct: 551 EMVKQGIEPDTFTYNLLIHGMCRIGKLDEAVNLWNECKSRDLVPNVYTYGVMIDGYCKAD 610
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + ++ E+ L L + + A N +A ++ + + KG P Y
Sbjct: 611 KIEEGEKLFTEL-LTQNLELNSVVYNTLIRAYCRNGNTVEAFKLHDDMRSKGIPPTTATY 669
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ G A + M + G +P + ++ G +G+ V Q +
Sbjct: 670 SSLIHGMCNIGRMEDAKCLIDEMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMS 728
Score = 44.7 bits (104), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/126 (21%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G P+ L+ C + Q+ + VL+ MSS + P+ +Y+++I S +
Sbjct: 691 EMRKEGLLPNVVCYTALIGGYCKLGQMDKVVNVLQEMSSYDIHPNKITYTVMIDGYSKSG 750
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
A +++ EMV G++P + ++ + ++ +++ ++G P+ Y
Sbjct: 751 DMKTAAKLLHEMV-GKGIVPDTVTYNVLTNGFCKEGKIEEGFKICDYMSQEGLPLDEITY 809
Query: 281 EVVVEG 286
+V G
Sbjct: 810 TTLVHG 815
>gi|255560884|ref|XP_002521455.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539354|gb|EEF40945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 623
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 89/212 (41%), Gaps = 41/212 (19%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ V D L M+ G+ PD T N L+S C +L +A + + M +PDL
Sbjct: 260 CQDGDVDKVNDFLERMEEEGFEPDIVTYNTLISCYCRKGRLDDAFYLYRIMYRRNVLPDL 319
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMV--------------------------------- 233
SY+ ++ + K +A ++ M+
Sbjct: 320 VSYTALMNGLCKEGKVREAHQLFHRMIHRGLNPDIVSFNTLICGYCKEGKMRESRSLLHE 379
Query: 234 -LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE-VVVEGCLECR 291
+ G+ P + + R + A+ ++ LER G PI Y+ ++V C E R
Sbjct: 380 MIGSGICPDKVTCQVLIEGYRKEARIVSALNLVVELERFGVPISTDIYDYLMVSICEEGR 439
Query: 292 EYILAGKTVMG-MTERGFIPYIKVRQKVVEGL 322
+ A K+++ +++RG++P +++ K++E L
Sbjct: 440 PF--AAKSLLQRISQRGYVPGVEIYNKLIESL 469
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/173 (21%), Positives = 73/173 (42%), Gaps = 6/173 (3%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY P N L+ SLC D + +A V M P +Y +I + ++ +A
Sbjct: 454 GYVPGVEIYNKLIESLCKSDSIADALLVKSEMGHRNIKPSAITYKALICCLCRTSRSMEA 513
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+M+EM L G++P + + R++ KA +++ ++ + Y +V+
Sbjct: 514 ESLMEEM-LQSGMLPDPDICRALMHVYCKERDIGKAETLLQTFAKEFQIFDSESYNTLVK 572
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
E + + M + GF P I+ ++++ GL WK V + +
Sbjct: 573 TYCEDADATRLMELQDRMLKVGFAPNIQTFRQMIHGL-----WKAMAVEKDKL 620
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 52/107 (48%), Gaps = 8/107 (7%)
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
YDYL+ + P A ++LQR + G VP +I + +E C+S S+AD LL
Sbjct: 427 YDYLMVSICEEGRPFA-AKSLLQRISQRGYVPGVEIY----NKLIESLCKSDSIADALLV 481
Query: 162 MKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
+G+ P T L+ LC + +EA +++ M + +PD
Sbjct: 482 KSEMGHRNIKPSAITYKALICCLCRTSRSMEAESLMEEMLQSGMLPD 528
>gi|449444222|ref|XP_004139874.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
gi|449492651|ref|XP_004159061.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g62910-like [Cucumis sativus]
Length = 588
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/226 (20%), Positives = 100/226 (44%), Gaps = 10/226 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCN 175
A +L+ ++ G VP L ++ ++ C S ++ + M S GY PD + N
Sbjct: 291 AKKLLEMMIQIGIVP----NLFTYTSLIKGFCLVGDLNSAKELFVSMPSKGYEPDVISYN 346
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ C ++ EA K+ M PD+++ +++ A+ A K +DA E+ + V+
Sbjct: 347 MLINGYCKTLKVEEAMKLFNEMLHVGMWPDVKTSGVLLKALFLAGKVDDAKELFR--VIK 404
Query: 236 MGLMPRQGMVIKV-AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
MP+ + + L N +++A+++ LE + + + +++G + +
Sbjct: 405 PYAMPKDLCICCIFLDGLCKNGYIFEAMKLFNELESYNMKLDIETFGCLIDGLCKAGKLE 464
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + + E G P ++ G G+ A ++ Q+ E
Sbjct: 465 TAWELFEKLYEEGIQPDAMAYSSMIHGFCKKGQVDKANILFQKMEE 510
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 3/87 (3%)
Query: 150 CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + + L M I GY PD T L+ LC +++EA K+ M C P++
Sbjct: 137 CNVNRINEGLAAMAGIMRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQKLGCTPNV 196
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMV 233
+Y +I + N A++ +EM+
Sbjct: 197 VTYGTLIKGLCALGNINIALKWHQEML 223
Score = 41.2 bits (95), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 83/200 (41%), Gaps = 18/200 (9%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
RLL A +E Q V + +M G PD T N L++ LC ++++ E + G+
Sbjct: 96 RLLAGLAKIEHYSQ---VFSLYKQMHLAGLWPDLLTLNILINCLCNVNRINEGLAAMAGI 152
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIK------- 247
+PD+ +++ +I + + +A ++ M +G P G +IK
Sbjct: 153 MRRGYIPDVVTFTTLIKGLCVEHRIIEATKLFMRMQ-KLGCTPNVVTYGTLIKGLCALGN 211
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ AL+ ++EM F C Y ++++G + + A M ++G
Sbjct: 212 INIALKWHQEMLNDTSPYVF----NCRPNVISYSIIIDGLCKVGNWEEAICLFNEMVDQG 267
Query: 308 FIPYIKVRQKVVEGLAGVGE 327
P + +++ L G+
Sbjct: 268 VQPNVVTFSVLIDMLCKEGQ 287
>gi|298711207|emb|CBJ32428.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 870
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 78/325 (24%), Positives = 130/325 (40%), Gaps = 49/325 (15%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRP-RSRPKIAYDYLLSYTL 110
EL+G E+ PNP+ + S F R + E E F +R +RP L +
Sbjct: 166 ELMGMMEDEGITPNPYHYNSMFMALERGERWREAAELFRKMRACGTRPNALTYAPLIGVM 225
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQIR---LLLSSAWLERRCQSQSVADILLE--MKSI 165
+ +A A+L+ LR P R LLL++ R+ + A ++ E K
Sbjct: 226 DRCNKQDMAGAVLKEMLRES--PRDSTREYNLLLNACAKARKWEH---AQLVFEDMKKKA 280
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T N ++++L ++ EA L M PD+ ++ +I A + + K A
Sbjct: 281 GVKPDNVTYNTVINALGRCGRVKEATVHLHAMKEQGLSPDVVTFGTLIHACAQSAKREPA 340
Query: 226 VEMMKEMVLNMGLMP------------------RQGM----------------VIKVAAA 251
+ + E+V + GL P +QG+ V A A
Sbjct: 341 LALFAELV-SRGLKPNLEAYKGCIVSCHKTGHYQQGLDLFNRMLADKVRMDRVVFNTAIA 399
Query: 252 LRANREMW-KAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
A ++W + V M+ E ERK P + Y + GC++ ++ + M E GF
Sbjct: 400 CCAQLKLWRRGVAMLDEMRERKVAPDQYS-YNSAIYGCVKAQQSQQMTMVLARMREDGFD 458
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVV 334
P + ++ LA W+ A +
Sbjct: 459 PDVWTYSNLIRCLADSMLWRRAVGI 483
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 37/160 (23%), Positives = 66/160 (41%), Gaps = 2/160 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESY 209
QSQ + +L M+ G+ PD T + L+ L A +L M PD +
Sbjct: 441 QSQQMTMVLARMREDGFDPDVWTYSNLIRCLADSMLWRRAVGILDDMLLEGRVQPDAHCF 500
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ + A S + +A ++ M GL P + + A + E KA+ M+E +
Sbjct: 501 NAAVRACSKVGEWAEAERLVTGM-RGQGLAPDKYTYNSLIYAYGNSGEWEKALSMLEEIR 559
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
G + Y ++ C + ++ A + + M ERG +
Sbjct: 560 AAGFKVNCMAYSAAIKACDKAFQWERALELLDRMVERGGV 599
>gi|297811615|ref|XP_002873691.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297319528|gb|EFH49950.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 938
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 81/186 (43%), Gaps = 10/186 (5%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MKS G P CN +V LC ++ EA +L M E P+L +Y I + MS+
Sbjct: 598 KMKSCGIKPSLMICNIVVGMLCEKGKMKEAIDILDQMMFMEIHPNLTTYRIFLD-MSSKH 656
Query: 221 KTNDAVEMMKEMVLNMGL-MPRQ--GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K DA+ E +L+ G+ + RQ +I L R KA ++E +E +G
Sbjct: 657 KRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTR---KAAMVMEDMEARGFVPDT 713
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ ++ G A T M E G P + ++ GL+ G L V +
Sbjct: 714 VTFNALMHGYFVGSHVGKALSTYSMMMEAGISPNVATYNTIIRGLSDAG---LIKEVEKW 770
Query: 338 FAELKS 343
+E+KS
Sbjct: 771 LSEMKS 776
Score = 41.2 bits (95), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 38/80 (47%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V L EMKS G PD T N L+S I E+ + M + VP +Y+++
Sbjct: 765 KEVEKWLSEMKSRGMRPDDFTYNALISGQAKIGNKKESMTIYCEMIADGLVPKTSTYNVL 824
Query: 213 IGAMSTARKTNDAVEMMKEM 232
I + K A E+MKEM
Sbjct: 825 ISEFAKVGKMLQATELMKEM 844
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 40/211 (18%), Positives = 78/211 (36%), Gaps = 29/211 (13%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-------------- 203
L EM IG PD + N L+ C + A ++ +S +
Sbjct: 183 FLSEMVKIGILPDTVSFNTLIDGFCKVGNFARAKALVDEISELNLITHTILISSYYNLHA 242
Query: 204 --------------PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
PD+ ++S +I + K + +++EM MG+ P +
Sbjct: 243 IEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLLLREME-EMGVYPNHVTYTTLV 301
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+L ++ A+ + + +G P+ Y V++ G + + A KT + E +
Sbjct: 302 DSLFKAKDYRHALALYSQMVVRGIPVDLVVYTVLMAGLFKAGDLREAEKTFKMLLEDNEV 361
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
P + +V+GL G+ A + + E
Sbjct: 362 PNVVTYTALVDGLCKAGDLSSAEFIITQMLE 392
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 84/197 (42%), Gaps = 9/197 (4%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ L+ + + ++ + +M G+ PD T + +++ LC +++E +
Sbjct: 222 ISELNLITHTILISSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKDGKVMEGGLL 281
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV--AAA 251
L+ M P+ +Y+ ++ ++ A+ A+ + +MV+ +P +V V A
Sbjct: 282 LREMEEMGVYPNHVTYTTLVDSLFKAKDYRHALALYSQMVVRG--IPVDLVVYTVLMAGL 339
Query: 252 LRAN--REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+A RE K +M+ LE P Y +V+G + + A + M E+
Sbjct: 340 FKAGDLREAEKTFKML--LEDNEVP-NVVTYTALVDGLCKAGDLSSAEFIITQMLEKSVF 396
Query: 310 PYIKVRQKVVEGLAGVG 326
P + ++ G G
Sbjct: 397 PNVVTYSSMINGYVKKG 413
>gi|359482337|ref|XP_002267057.2| PREDICTED: pentatricopeptide repeat-containing protein At1g80150,
mitochondrial-like [Vitis vinifera]
Length = 405
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 85/193 (44%), Gaps = 5/193 (2%)
Query: 143 SAWLERRCQSQSVADILLEMKSI----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+A L+ QS + I L ++ + G D + N ++ +LC +D L +A V+ M
Sbjct: 149 NAALKVLTQSYDLEAIDLFLRDVPFKFGIELDVFSVNIVIKALCDMDILEKAYMVMIEME 208
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
A PD+ +Y+ +I A + + + MV+ G +P L R
Sbjct: 209 KAGVNPDVVTYTTLISAFYKSNRWEVGNGLWNLMVMK-GCLPNLATFNVRIQYLVNRRRA 267
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
W+A ++ +E G Y +V++G + +A K + +G+ P +K+ Q +
Sbjct: 268 WQANSLMGMMEYLGITPDEVTYNLVIKGFCQAGYLEMAKKVYSALHGKGYKPNVKIYQTM 327
Query: 319 VEGLAGVGEWKLA 331
+ L GE+ +A
Sbjct: 328 IHYLCKGGEFDMA 340
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 81/183 (44%), Gaps = 13/183 (7%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+++EM+ G +PD T L+S+ ++ + M C+P+L ++++ I +
Sbjct: 203 VMIEMEKAGVNPDVVTYTTLISAFYKSNRWEVGNGLWNLMVMKGCLPNLATFNVRIQYLV 262
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQ---GMVIK---VAAALRANREMWKAVEMIEFLERK 271
R+ A +M M+ +G+ P + +VIK A L ++++ A L K
Sbjct: 263 NRRRAWQANSLMG-MMEYLGITPDEVTYNLVIKGFCQAGYLEMAKKVYSA------LHGK 315
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G + Y+ ++ + E+ +A R + + K++EGL G GE A
Sbjct: 316 GYKPNVKIYQTMIHYLCKGGEFDMAYTMCKDCMNRNWSLNVDTIYKLLEGLKGNGEIDKA 375
Query: 332 TVV 334
V+
Sbjct: 376 KVI 378
>gi|357138018|ref|XP_003570595.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Brachypodium distachyon]
Length = 548
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 67/134 (50%), Gaps = 1/134 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ +M +G PD T L+ +C +D++ A VL+ M A PD+ +Y+ + +
Sbjct: 342 ELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFVLEEMGKAGFPPDIVTYNCFLEVL 401
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+K +DA+++ + M+ P + RE +A+++ ++++GC
Sbjct: 402 CNLQKADDALKLCERMI-EAHCEPSVHTYNMLMVMFFQMREPHRALDIWLEMDKRGCRRA 460
Query: 277 FQGYEVVVEGCLEC 290
YE++++G +C
Sbjct: 461 VDTYEIMIDGLFDC 474
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 36/169 (21%), Positives = 73/169 (43%), Gaps = 5/169 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ N L+ + C + EA V G + + E+Y+I+ AR A+++
Sbjct: 212 PETDALNILLDAFCKCGMVREAETVF-GRVKRKLQGNAETYNILFFGWCRARDPKKAMKV 270
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG---FQGYEVVVE 285
++EM+L M P I + + + +A E+ EF+ +G I + Y V++
Sbjct: 271 LEEMIL-MKHAPESFTYIAAIDSFCSAGLVSEAKELFEFMRTEGSSISSPTAKAYSVMIV 329
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ + + M + G +P + + ++EG+ V + A V
Sbjct: 330 ALVKADRMDDCFELISDMIKLGCMPDVSTFKDLIEGMCLVDKIDTAYFV 378
>gi|222636757|gb|EEE66889.1| hypothetical protein OsJ_23712 [Oryza sativa Japonica Group]
Length = 579
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V +IL EMK P T +V L ID+L EA + + S
Sbjct: 336 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 395
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +++EM + GL P + AL E+
Sbjct: 396 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM-MKKGLTPNVYTWNSLLDALVKAEEIN 454
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ CP Y +++ G ++Y A M ++G +P + ++
Sbjct: 455 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 514
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA VG A + +RF
Sbjct: 515 SGLAKVGNITDAYSLFERF 533
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 424 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 483
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K N A ++M GL+P + + L + A + E + G
Sbjct: 484 RVQKYNKAFVFWQDMQ-KQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 542
Query: 278 QGYEVVVEG 286
+ ++EG
Sbjct: 543 ASFNALIEG 551
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 3/171 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM+ P+ T N +V LC +L EA K+ + S C PD +Y +I +
Sbjct: 144 ILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 203
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A + ++M L+ G + + + ++ + L R+GC
Sbjct: 204 KKGQVDEAYRLFEKM-LDAGHNANPVVYTSLIRNFFIHGRKEDGHKIFKELIRRGCKPDL 262
Query: 278 QGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGE 327
++ + E + G+ + + GF+P ++ ++ GL G+
Sbjct: 263 TLLNTYMDCVFKAGE-VEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 312
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L+R GC+P V +L+ +R+ A L E+ P+ T N +
Sbjct: 72 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE---ALSLFEVMKKDAEPNSSTYNII 128
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ LC ++ EA ++L M A P+L + +I++ + ARK +A ++ +
Sbjct: 129 IDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFE 181
>gi|125557843|gb|EAZ03379.1| hypothetical protein OsI_25524 [Oryza sativa Indica Group]
Length = 716
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 88/199 (44%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V +IL EMK P T +V L ID+L EA + + S
Sbjct: 468 NAVVDGFCKSGKVHKAYEILEEMKEKCVQPTVATYGAIVDGLAKIDRLDEAYMLFEEAKS 527
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +++EM + GL P + AL E+
Sbjct: 528 KGIELNVVLYSSLIDGFGKVGRIDEAYLILEEM-MKKGLTPNVYTWNSLLDALVKAEEIN 586
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ CP Y +++ G ++Y A M ++G +P + ++
Sbjct: 587 EALVCFQSMKEMKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMI 646
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA VG A + +RF
Sbjct: 647 SGLAKVGNITDAYSLFERF 665
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 556 ILEEMMKKGLTPNVYTWNSLLDALVKAEEINEALVCFQSMKEMKCPPNTYTYSILINGLC 615
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K N A ++M GL+P + + L + A + E + G
Sbjct: 616 RVQKYNKAFVFWQDM-QKQGLVPNVVTYTTMISGLAKVGNITDAYSLFERFKANGGIPDA 674
Query: 278 QGYEVVVEG 286
+ ++EG
Sbjct: 675 ASFNALIEG 683
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 72/171 (42%), Gaps = 3/171 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM+ P+ T N +V LC +L EA K+ + S C PD +Y +I +
Sbjct: 276 ILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFESASQRGCNPDCVTYCSLIDGLG 335
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A + ++M L+ G + + + ++ + L R+GC
Sbjct: 336 KKGQVDEAYRLFEKM-LDAGHNANPVVYTSLIRNFFIHGRKEDGHKVFKELIRRGCKPDL 394
Query: 278 QGYEVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGE 327
++ + E + G+ + + GF+P ++ ++ GL G+
Sbjct: 395 TLLNTYMDCVFKAGE-VEKGRMIFEDIRSYGFLPDVRSYSILIHGLTKAGQ 444
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 29/113 (25%), Positives = 54/113 (47%), Gaps = 4/113 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L+R GC+P V +L+ +R+ A L E+ P+ T N +
Sbjct: 204 AYKLLERLRERGCIPSVVSFNSILTCLGKKRKVDE---ALSLFEVMKKDAEPNSSTYNII 260
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ LC ++ EA ++L M A P+L + +I++ + ARK +A ++ +
Sbjct: 261 IDMLCLGGRVEEAYRILDEMEHASLFPNLLTVNIMVDRLCKARKLEEAYKIFE 313
Score = 37.4 bits (85), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 42/233 (18%), Positives = 91/233 (39%), Gaps = 14/233 (6%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTL- 110
E+L +E C P ++ + + ID + E+++ I + +L +L
Sbjct: 485 EILEEMKEKCVQPTVATYGAIVDG---LAKIDRLDEAYMLFEEAKSKGIELNVVLYSSLI 541
Query: 111 ---QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKS 164
+ + A IL+ ++ G P + ++ L+ +++ + + L+ MK
Sbjct: 542 DGFGKVGRIDEAYLILEEMMKKGLTP----NVYTWNSLLDALVKAEEINEALVCFQSMKE 597
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+ P+ T + L++ LC + + +A + M VP++ +Y+ +I ++ D
Sbjct: 598 MKCPPNTYTYSILINGLCRVQKYNKAFVFWQDMQKQGLVPNVVTYTTMISGLAKVGNITD 657
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + + N G+ + ANR M + L C F
Sbjct: 658 AYSLFERFKANGGIPDAASFNALIEGMSNANRAMEAYQTTVYQLSSSSCSWNF 710
>gi|224139020|ref|XP_002322960.1| predicted protein [Populus trichocarpa]
gi|222867590|gb|EEF04721.1| predicted protein [Populus trichocarpa]
Length = 694
Score = 54.7 bits (130), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 95/208 (45%), Gaps = 2/208 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I+ + + GC P + L + ++ R + + EM++ G P + N L+
Sbjct: 448 ALGIVHQMDKYGCELSPHVCNPLINGFV-RASKLEEAICFFREMETKGCSPTVVSYNTLI 506
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC ++ +A +K M + PD+ +YS+++ + +K + A+ + ++ VL GL
Sbjct: 507 NGLCKAERFSDAYSFVKEMLEKDWKPDMITYSLLMDGLCQGKKIDMALNLWRQ-VLVKGL 565
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P M + L + ++ A+ + +++ C + +++G + RE +A
Sbjct: 566 EPDVTMHNILMHGLCSAGKIEDALLLYSNMKQSNCLPNLVTHNTLMDGLYKARECEMASV 625
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
M + GF P I ++GL G
Sbjct: 626 IWACMFKNGFQPDIISYNITLKGLCSCG 653
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 90/208 (43%), Gaps = 7/208 (3%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPN--PFSFLSNFPQNHRIKVIDEMLE 87
+R+ + A ++A ++ L FE PN ++ L R V + L
Sbjct: 113 GIRSYNALLNAFIEANLLEKAESFLAYFETVGILPNLQTYNILIKISVKKRQFVEAKGLL 172
Query: 88 SFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
++ + +Y +++ ++S L AL + G VP ++ + +
Sbjct: 173 DWMWSKDLKPDVYSYGTVINGMVKS-GDLVSALEVFDEMFERGLVPDVMCYNIMIDGFFK 231
Query: 148 R--RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
R Q + + + L++ + +P+ T N +++ LC + + E+ ++ + M EC D
Sbjct: 232 RGDYVQGKEIWERLVKGSCV--YPNVVTYNVMINGLCKMGRFDESLEMWERMKKNECEMD 289
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMV 233
L +YS +I + + AVE+ KEMV
Sbjct: 290 LFTYSSLICGLCDVGNVDGAVEVYKEMV 317
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 2/111 (1%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
GC P + L +A++E ++ + L +++G P+ T N L+ Q VE
Sbjct: 109 GCKPGIRSYNALLNAFIEANLLEKAES-FLAYFETVGILPNLQTYNILIKISVKKRQFVE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
A +L M S + PD+ SY VI M + A+E+ EM GL+P
Sbjct: 168 AKGLLDWMWSKDLKPDVYSYGTVINGMVKSGDLVSALEVFDEM-FERGLVP 217
>gi|302780829|ref|XP_002972189.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
gi|300160488|gb|EFJ27106.1| hypothetical protein SELMODRAFT_412752 [Selaginella moellendorffii]
Length = 529
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 89/201 (44%), Gaps = 38/201 (18%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTC 174
+A + L+ +P ++ S +E C + V D +L E+ + PD T
Sbjct: 1 MARTLFNDMLKQAALP----DIVTFSTLVEGYCNAGLVDDAERLLEEIIASDCSPDVYTY 56
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV- 233
LV S C + ++VEA +VLK M+ C P++ +Y+ +I A A K A ++++EMV
Sbjct: 57 TSLVDSFCKVKRMVEAHRVLKRMAKRGCQPNVVTYTALIDAFCRAGKPTVAYKLLEEMVG 116
Query: 234 --------------LNMGLMPRQGMVIKVAAALRANR-------------EMWKAVEMIE 266
+ +G R + +A R R E+ KA+E++E
Sbjct: 117 INNDVQPNVQELASVGLGTWKRLARCSRDWSATRTARRICSHTGGLCQGKELSKAMEVLE 176
Query: 267 --FLERKGCPIGFQGYEVVVE 285
L RKG P + YE V++
Sbjct: 177 EMTLSRKGRP-NAEAYEAVIQ 196
>gi|357121428|ref|XP_003562422.1| PREDICTED: pentatricopeptide repeat-containing protein At1g13040,
mitochondrial-like [Brachypodium distachyon]
Length = 663
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 143 SAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S W+ CQS V ++L++M +G PD CN + LC ++L +A ++++ M +
Sbjct: 232 SRWISALCQSNRIELVQELLVDMDKLGCSPDIWACNIYIYYLCKQNRLPDALQMVEKMRT 291
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
PD+ +Y V+ + +K +A+ + +EMV
Sbjct: 292 KGTSPDVVTYQTVVSGLCDNKKFAEAIGLWEEMV 325
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 81/195 (41%), Gaps = 3/195 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+S W R I+ M++ G PD T N L++ C I + +A K+++ M +
Sbjct: 374 LISGFW--RAGSIDKAYKIISFMRTNGCEPDIVTYNILLNHYCTIGMMEKAEKLIRKMET 431
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD SY+ ++ + + + A + + + G I + A + +++
Sbjct: 432 SGVNPDRYSYNQLLKGLCKTHQLDKAFAFVSDHMEVGGFCDTVSCNILIDAFCKT-KKVK 490
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
A+E+ + + KG Y ++ G Y LA + M P + + ++
Sbjct: 491 SALELFKEMGYKGMQADAVTYGTLINGLFSVGYYNLAEELFEQMLNAQIDPNVNLYNIML 550
Query: 320 EGLAGVGEWKLATVV 334
L VG +K A +
Sbjct: 551 HHLCKVGHFKRAQTI 565
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 8/159 (5%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P + + ++ C+ + D L +M++ G PD T +VS LC +
Sbjct: 258 GCSP----DIWACNIYIYYLCKQNRLPDALQMVEKMRTKGTSPDVVTYQTVVSGLCDNKK 313
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
EA + + M + PD+ S +I + K ++A E+ M L + + +
Sbjct: 314 FAEAIGLWEEMVKRDLKPDVFSCGALIFGLCKNNKVDEAFELASRM-LTLDIELSVCIYN 372
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + + KA ++I F+ GC Y +++
Sbjct: 373 ALISGFWRAGSIDKAYKIISFMRTNGCEPDIVTYNILLN 411
>gi|147793827|emb|CAN62355.1| hypothetical protein VITISV_022418 [Vitis vinifera]
Length = 546
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G +PD CN ++ +LC ++ EA +VL+ M+ +C PD+ +Y+ +I + ++
Sbjct: 324 GCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKV 383
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E++ +M G +P L++ ++ + ++E +ER GC + Y ++++
Sbjct: 384 YELLDDME-QKGCLPN---ARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILK 439
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ + T+ M G P + ++ GL G
Sbjct: 440 LYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKG 480
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + +A+ L K + PD + N +++ C + L EA + + +++C PD +
Sbjct: 237 RYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFT 296
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y I I +++ A K + AV++ + M G P + + AL + + +A+E++ +
Sbjct: 297 YGIFINSLTKAGKLSTAVKLFQAM-WEKGCNPDVAICNCIIDALCFKKRIPEALEVLREM 355
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ C Y +++ + + + + + M ++G +P
Sbjct: 356 NERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLP 397
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVAD 157
K Y ++ +L L A+ + Q GC P I ++ + ++R +
Sbjct: 294 KFTYGIFIN-SLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPE--ALE 350
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM PD T N L+ LC I + + ++L M C+P+ +Y ++
Sbjct: 351 VLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYLL---K 407
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +K + +++ M N M + + + E+ K ++ +ER G
Sbjct: 408 STKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYEL-KLRSTLDEMERNGMGPDQ 466
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ Y +++ G + A MT G +P
Sbjct: 467 RTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVP 499
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY P CG N ++ L + + E ++ MS + + + ++ +++ + A KT +A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLXNERTFGVLLNRYAAAHKTEEA 209
Query: 226 VEMM---KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL---ERKGCPIGFQG 279
V++ K + + L+ Q +++ + +K VEM EFL ++ P +
Sbjct: 210 VKIFYKRKGLGFELDLIAFQTLLMSLCR--------YKHVEMAEFLFHSKKNEFPPDIKS 261
Query: 280 YEVVVEG 286
V++ G
Sbjct: 262 MNVILNG 268
>gi|225461528|ref|XP_002282646.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Vitis vinifera]
Length = 546
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 76/161 (47%), Gaps = 4/161 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G +PD CN ++ +LC ++ EA +VL+ M+ +C PD+ +Y+ +I + ++
Sbjct: 324 GCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFEKV 383
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E++ +M G +P L++ ++ + ++E +ER GC + Y ++++
Sbjct: 384 YELLDDME-QKGCLPN---ARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYNLILK 439
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ + T+ M G P + ++ GL G
Sbjct: 440 LYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKG 480
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 76/162 (46%), Gaps = 1/162 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + +A+ L K + PD + N +++ C + L EA + + +++C PD +
Sbjct: 237 RYKHVEMAEFLFHSKKNEFPPDIKSMNVILNGWCVLGSLREAKRFWNDIITSKCKPDKFT 296
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y I I +++ A K + AV++ + M G P + + AL + + +A+E++ +
Sbjct: 297 YGIFINSLTKAGKLSTAVKLFQAM-WEKGCNPDVAICNCIIDALCFKKRIPEALEVLREM 355
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ C Y +++ + + + + + M ++G +P
Sbjct: 356 NERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLP 397
Score = 41.6 bits (96), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVAD 157
K Y ++ +L L A+ + Q GC P I ++ + ++R +
Sbjct: 294 KFTYGIFIN-SLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPE--ALE 350
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM PD T N L+ LC I + + ++L M C+P+ +Y + +
Sbjct: 351 VLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYL---LK 407
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +K + +++ M N M + + + E+ K ++ +ER G
Sbjct: 408 STKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYEL-KLRSTLDEMERNGMGPDQ 466
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ Y +++ G + A MT G +P
Sbjct: 467 RTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVP 499
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/127 (22%), Positives = 59/127 (46%), Gaps = 14/127 (11%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY P CG N ++ L + + E ++ MS + + + ++ +++ + A KT +A
Sbjct: 150 GYSPGCGVHNEILDILGRMRRFHEMTQLFDEMSKRKGLVNERTFGVLLNRYAAAHKTEEA 209
Query: 226 VEMM---KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL---ERKGCPIGFQG 279
V++ K + + L+ Q +++ + +K VEM EFL ++ P +
Sbjct: 210 VKIFNKRKGLGFELDLIAFQTLLMSLCR--------YKHVEMAEFLFHSKKNEFPPDIKS 261
Query: 280 YEVVVEG 286
V++ G
Sbjct: 262 MNVILNG 268
>gi|326513116|dbj|BAK06798.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 489
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 99/257 (38%), Gaps = 46/257 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH-----PDCGT 173
AL +L++ SG P ++ + R Q Q + L+MK G PD +
Sbjct: 216 ALDLLRQMAESGVTPTKTTYNIILKGFF-RAGQIQHAWNFFLQMKKRGAKDESCKPDIVS 274
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L QL +A K+ MS C P + +Y+ +I + DAV + +MV
Sbjct: 275 YTTIIHGLGVAGQLDKARKLFDEMSKEGCTPSVATYNALIQVICKKGNVEDAVTVFDDMV 334
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV--------- 284
MP + L ++ +A++++E ++ +GC Q Y V++
Sbjct: 335 -RKDYMPNVVTYTVLIRGLCHVGKIDRAMKLMERMKGEGCEPVVQTYNVLIRYSFEEGEI 393
Query: 285 -------------EGCL-----------------ECREYILAGKTVMGMTERGFIPYIKV 314
E CL + A + VM M ERG++P +
Sbjct: 394 EKALCLFERMSKGEDCLPNQDTYNIIISAMFVRKRAEDMATAARMVMEMVERGYLPRRFM 453
Query: 315 RQKVVEGLAGVGEWKLA 331
+V+ GL G +++
Sbjct: 454 LNRVLNGLMLTGNQQIS 470
>gi|225452992|ref|XP_002263038.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 644
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 73/182 (40%), Gaps = 1/182 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G + T N L++S C ++++ A VL + C PD S++ +I +
Sbjct: 99 KMDSFGIPHNVYTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEG 158
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A+ + +M+ G P + + L A+ ++ +E+ C Y
Sbjct: 159 QIGEALHLFDKMIWE-GFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVY 217
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ + R+ A M +G P I +V L +GEWK + +
Sbjct: 218 GTLIHSLCKDRQQTQAFNLFSEMITKGISPNIVTCNSLVYALCNLGEWKHVNTLLNEMVD 277
Query: 341 LK 342
K
Sbjct: 278 SK 279
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 92/226 (40%), Gaps = 15/226 (6%)
Query: 104 YLLSYTLQS---LHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADIL 159
Y L+ + S L+ + A ++L + L+ GC P L+ LE Q +
Sbjct: 110 YTLNVLINSFCHLNRVNFAFSVLAKILKLGCQPDTASFTTLIKGLCLEG--QIGEALHLF 167
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M G+ PD L++ LC A ++L+ M C PD+ Y +I ++
Sbjct: 168 DKMIWEGFQPDVVIYATLINGLCKTGHTSAAIRLLRSMEKGNCQPDVVVYGTLIHSLCKD 227
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCPIGF 277
R+ A + EM+ G+ P + AL N WK V + E ++ K P
Sbjct: 228 RQQTQAFNLFSEMITK-GISPNIVTCNSLVYAL-CNLGEWKHVNTLLNEMVDSKIMPNAI 285
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
VV+ C+E ++ A V M + G P + +++G
Sbjct: 286 S-LTTVVDAL--CKEGMVAQAHDVVDMMFQSGVEPDVVTYTALIDG 328
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ + N L++ C I+++ +A + + M + +P+ +Y+ +I + + DA
Sbjct: 349 GCAPNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDA 408
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + +EMV G +P + L N + KA+ +++ +E Q Y +V++
Sbjct: 409 IALFREMVA-CGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVID 467
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
G E A ++ +G P + + GL G AT
Sbjct: 468 GMCRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEAT 514
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 39/156 (25%), Positives = 65/156 (41%), Gaps = 1/156 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L+ LC L +A +LK + + PD++ Y+IV
Sbjct: 406 QDAIALFREMVACGQIPDLVTYRILLDYLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIV 465
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + DA ++ + + GL P + L + +A ++ ++
Sbjct: 466 IDGMCRAGELEDARDLFSNLS-SKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA 524
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
C Y + +G L E A + + M RGF
Sbjct: 525 CSADGCTYNTITQGFLRNNETSRAIQLLEEMLARGF 560
Score = 37.7 bits (86), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 42/212 (19%), Positives = 90/212 (42%), Gaps = 7/212 (3%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPL-RPRSRPKIAYDYLLSYTLQSLHPLPLALAI 122
PN FS+ + +I+ +D+ + F + R + P L + L + L A+A+
Sbjct: 352 PNVFSYNTLINGYCKIERMDKAMYLFEEMCRQKLIPNTVTYNTLIHGLCHVGRLQDAIAL 411
Query: 123 LQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+ + G +P + R+LL +L + C +L ++ PD ++ +
Sbjct: 412 FREMVACGQIPDLVTYRILLD--YLCKNCHLDKAMALLKAIEGSNLDPDIQIYTIVIDGM 469
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L +A + +SS P++ +Y+I+ + ++A ++ EM N
Sbjct: 470 CRAGELEDARDLFSNLSSKGLKPNVWTYNIMTHGLCKRGLLDEATKLFMEMDENA--CSA 527
Query: 242 QGMVIK-VAAALRANREMWKAVEMIEFLERKG 272
G + N E +A++++E + +G
Sbjct: 528 DGCTYNTITQGFLRNNETSRAIQLLEEMLARG 559
>gi|255580124|ref|XP_002530894.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223529547|gb|EEF31500.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 519
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 84/189 (44%), Gaps = 4/189 (2%)
Query: 137 IRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ +L ++ LE C+ V++ + EM S G PD T + + + C + + A +V
Sbjct: 246 VDVLAYNSLLEAFCKGGKVSEAYKMFREMGSNGIKPDACTFSIFIRAYCEANDIHLAYRV 305
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L M + VP++ +Y+ +I + K +A +++ E++ G P + A
Sbjct: 306 LDEMKRYDLVPNVFTYNCMIKKLCKKEKVEEAYQLLNEIIERSG-QPDAWSYNAILAYHC 364
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+ E+ A +I + + C Y ++++ + + A + M E+GF P +
Sbjct: 365 EHSEVNSATRLISRMVKDNCLPDKHSYNMLLKLLIRVGRFDRAIEVWESMGEKGFYPSVS 424
Query: 314 VRQKVVEGL 322
+V GL
Sbjct: 425 TYSVMVHGL 433
>gi|222628656|gb|EEE60788.1| hypothetical protein OsJ_14372 [Oryza sativa Japonica Group]
Length = 748
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/245 (22%), Positives = 101/245 (41%), Gaps = 4/245 (1%)
Query: 91 PLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERR 149
P P I +L + +H LALA+ R LR+G P V L+ +
Sbjct: 113 PHAAADAPTIYTYNILIDCYRRMHRPELALAVFGRLLRTGLGPDVCSYNTLIDG--FSKE 170
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
+ ++ +M PD T N L+ LC ++V++ +VL+ M A P+ ++Y
Sbjct: 171 GEVDKAYELFYKMIEQSVSPDVVTYNSLIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTY 230
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ +I STA ++V + KEM + GL+P AL + + +A ++ + +
Sbjct: 231 NSLIYGYSTAGMWKESVRVFKEMS-SSGLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMV 289
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
KG Y ++ G + V M +G +P + ++ A G
Sbjct: 290 LKGPKPNIISYSTLLHGYAAEGCFANMNSLVNLMVSKGIVPNHRFFNILINAYARCGMMD 349
Query: 330 LATVV 334
A ++
Sbjct: 350 KAMLI 354
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 34/136 (25%), Positives = 58/136 (42%), Gaps = 3/136 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DI+ M G P+ T N L+ C + + EA +L M+S P+ Y ++
Sbjct: 459 DIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMASIGIEPNCYIYGTLVDGY 518
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +DA+ + ++M L+ G+ P + + L R A +M + G +
Sbjct: 519 CKNGRIDDALTVFRDM-LHKGVKPTSVLYNIILHGLFQARRTTAAKKMFHEMIESGTTVS 577
Query: 277 FQGYEVVVEGCLECRE 292
Q Y VV+ G CR
Sbjct: 578 IQTYGVVLGGL--CRN 591
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 81/182 (44%), Gaps = 4/182 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ N L+++ + +A + + M + +PD +++ VI ++ +
Sbjct: 323 MVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 382
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGY 280
+DA+ MV ++G+ P + + + + E+ KA E+I E + + P G + +
Sbjct: 383 LDDALHKFNHMV-DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYF 441
Query: 281 EVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ + + GK +M M + G P + ++EG VG + A + A
Sbjct: 442 SSIINNLFK-EGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFALLDAMA 500
Query: 340 EL 341
+
Sbjct: 501 SI 502
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 66/165 (40%), Gaps = 1/165 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M SIG P+C LV C ++ +A V + M P Y+I++ +
Sbjct: 495 LLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDMLHKGVKPTSVLYNIILHGLF 554
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
AR+T A +M EM+ + + Q + V L N +A ++E L
Sbjct: 555 QARRTTAAKKMFHEMIESGTTVSIQTYGV-VLGGLCRNNCTDEANMLLEKLFAMNVKFDI 613
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ +V+ L+ A + ++ G +P + ++ L
Sbjct: 614 ITFNIVISAMLKVGRRQEAKELFAAISTYGLVPTVHTYNLMISNL 658
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 51/241 (21%), Positives = 90/241 (37%), Gaps = 28/241 (11%)
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWL------ERRCQSQSVADILLEMKSIGYH 168
PLP A A Q LRSG + R L L +++++DIL ++
Sbjct: 31 PLPPAYAAFQERLRSGTLGPDDARHLFDELLLRRDDPAPAPAPARAISDIL---AALARA 87
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC------VPDLESYSIVIGAMSTARKT 222
P C+ D A ++ K M C P + +Y+I+I +
Sbjct: 88 PPSAACS---------DGPALAVELFKRMDRWACPHAAADAPTIYTYNILIDCYRRMHRP 138
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
A+ + + L GL P + E+ KA E+ + + Y
Sbjct: 139 ELALAVFGRL-LRTGLGPDVCSYNTLIDGFSKEGEVDKAYELFYKMIEQSVSPDVVTYNS 197
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+++G + +E + + + + M + G P K ++ G + G WK + V F E+
Sbjct: 198 LIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRV---FKEMS 254
Query: 343 S 343
S
Sbjct: 255 S 255
>gi|255548041|ref|XP_002515077.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223545557|gb|EEF47061.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 262
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 83/213 (38%), Gaps = 39/213 (18%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A + + + +P + R+L+ L RR Q +L +M + G+ PDC T
Sbjct: 10 LSVAYKLFNQMFKRDVLPDIESYRILMQG--LCRRSQVNGAVGLLEDMLNKGFVPDCLTY 67
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC +L EA K+L M C PD+ Y+ +I + DA +++ +M
Sbjct: 68 TTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISGFCREGRAMDARKVLGDMEC 127
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N GC Y +V G + +
Sbjct: 128 N------------------------------------GCLPNLVSYRTLVAGICDQGMFD 151
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
A + M +GF P+ V +V+G VG+
Sbjct: 152 EAKSYLEEMILKGFSPHFSVSHALVKGFCIVGK 184
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 74/149 (49%), Gaps = 5/149 (3%)
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+LC +L A K+ M + +PD+ESY I++ + + N AV ++++M LN G +
Sbjct: 3 ALCLTGELSVAYKLFNQMFKRDVLPDIESYRILMQGLCRRSQVNGAVGLLEDM-LNKGFV 61
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE-YILAGK 298
P + +L +++ +A +++ ++ KGC Y ++ G CRE + +
Sbjct: 62 PDCLTYTTLLNSLCRKKKLREAYKLLCRMKVKGCNPDIVHYNTIISG--FCREGRAMDAR 119
Query: 299 TVMGMTE-RGFIPYIKVRQKVVEGLAGVG 326
V+G E G +P + + +V G+ G
Sbjct: 120 KVLGDMECNGCLPNLVSYRTLVAGICDQG 148
>gi|255566084|ref|XP_002524030.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536757|gb|EEF38398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 1016
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 61/247 (24%), Positives = 105/247 (42%), Gaps = 15/247 (6%)
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
F ++ + +++EM E IP + Y+ L++ L+ H A ++ +
Sbjct: 528 FFKAGKESAALNMVEEMTEKSIPFDV-----VTYNVLINGLLE--HGKYEAKSVYSGMIE 580
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
G P ++ A+ ++ + + ++ EMKS P TCN LV L ++
Sbjct: 581 MGLAPNQATYNIMIKAYC-KQGELDNALELWNEMKSHKIMPSSITCNTLVVGLSEAGEIE 639
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMV 245
+A VL MS P+L + +++ A S + K N AV M E +++MGL Q +
Sbjct: 640 KAMNVLNEMSVMGIHPNLVIHRVLLNASSKSGKAN-AVLQMHEQLVDMGLKINQEAYNNL 698
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
I V LR + KA +++++ R G Y ++ G E A T M
Sbjct: 699 IVVFCRLRMTK---KATSVLKYMIRDGFVADTVTYNALIRGYCESSHVKKALATYTQMLN 755
Query: 306 RGFIPYI 312
G P I
Sbjct: 756 EGVSPNI 762
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 84/182 (46%), Gaps = 3/182 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V +L EM+ +P+ T + +++ L EA V+K M +P+ Y+I+
Sbjct: 395 ERVESLLQEMEEKHINPNVITYSSIINGYTKKGILDEAINVMKKMLDQNIIPNAYVYAIL 454
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A K A ++ EM L+ GL + + L+ + M +A E+++ + +G
Sbjct: 455 IDGYCKAGKQEIATDLYNEMKLS-GLKVNNVLFDVLVNNLKRGKRMDEAEELLKDVTSRG 513
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV-VEGLAGVGEWKLA 331
+ Y +++G + + A V MTE+ IP+ V V + GL G+++
Sbjct: 514 LLLDHVNYTSLMDGFFKAGKESAALNMVEEMTEKS-IPFDVVTYNVLINGLLEHGKYEAK 572
Query: 332 TV 333
+V
Sbjct: 573 SV 574
>gi|414586649|tpg|DAA37220.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
gi|414586650|tpg|DAA37221.1| TPA: hypothetical protein ZEAMMB73_348855 [Zea mays]
Length = 969
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 101/247 (40%), Gaps = 25/247 (10%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVA 156
+ Y LL L++ +P A I R + +GC P + SA ++ C +SQ
Sbjct: 526 VTYTALLHAYLKT-KQVPQASDIFHRMVDAGCAP----NTITYSALVDGLCKAGESQKAC 580
Query: 157 DILLEMKSI-----------GYH-----PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
++ +M G H P+ T L+ LC ++V+A ++L MSS
Sbjct: 581 EVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELLDVMSSN 640
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C P+ Y +I K ++A E+ M G +P + A+ +R +
Sbjct: 641 GCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMS-KCGYLPTVHTYTSLIDAMFKDRRLDL 699
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A++++ + C Y +++G E A K + M +RG P + +++
Sbjct: 700 AIKVLSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLID 759
Query: 321 GLAGVGE 327
GL G+
Sbjct: 760 GLGKSGK 766
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 64/280 (22%), Positives = 107/280 (38%), Gaps = 30/280 (10%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
KV +EML S L + A L + A I++ +R G VP
Sbjct: 406 KVYEEMLASSCVLNKVNTANFAR------CLCGMGKFDKAFQIIKLMMRKGFVPDTSTY- 458
Query: 140 LLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
S + C++ V L EMKS+G PD T L+ S C + + +A
Sbjct: 459 ---SKVITFLCEAMKVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVGLIEQARSWFDE 515
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C P + +Y+ ++ A ++ A ++ MV + G P + L
Sbjct: 516 MESVGCSPSVVTYTALLHAYLKTKQVPQASDIFHRMV-DAGCAPNTITYSALVDGLCKAG 574
Query: 257 EMWKAVE----MIEFLERKGCPIGFQG------------YEVVVEGCLECREYILAGKTV 300
E KA E MI + G F+G Y +++G + + + A + +
Sbjct: 575 ESQKACEVYAKMIGTSDNVGSDFYFEGEHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL 634
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M+ G P + +++G VG+ A V R ++
Sbjct: 635 DVMSSNGCEPNHIIYDALIDGFCKVGKLDNAQEVFFRMSK 674
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 97/232 (41%), Gaps = 13/232 (5%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A++ L R + C+P V R LL+ +L+++ Q I+ M + G +P+ N L
Sbjct: 293 AISFLHRMRCNSCIPNVVTYRTLLA-GFLKKK-QLGWCKRIISMMMNEGCNPNPSLFNSL 350
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND------AVEMMKE 231
V S C A K+L M+ C P Y+I IG++ + + A ++ +E
Sbjct: 351 VHSYCNARDYPYAYKLLNRMAGCGCPPGYVVYNIFIGSICSGEELPSPDLLALAEKVYEE 410
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
M+ + ++ + A L + KA ++I+ + RKG Y V+ E
Sbjct: 411 MLASSCVLNKVNTA-NFARCLCGMGKFDKAFQIIKLMMRKGFVPDTSTYSKVITFLCEAM 469
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ A M G IP + +++ VG L R F E++S
Sbjct: 470 KVEKAFLLFQEMKSVGVIPDVYTYTILIDSFCKVG---LIEQARSWFDEMES 518
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 47/245 (19%), Positives = 101/245 (41%), Gaps = 5/245 (2%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
I YD L+ + L A + R + G +P L A + R ++ +
Sbjct: 646 HIIYDALID-GFCKVGKLDNAQEVFFRMSKCGYLPTVHTYTSLIDAMFKDRRLDLAIK-V 703
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M P+ T ++ LC I + +A K+L M C P++ +Y+ +I +
Sbjct: 704 LSQMLESSCTPNVVTYTAMIDGLCRIGECQKALKLLSMMEKRGCNPNVVTYTSLIDGLGK 763
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
+ K + ++++ +M+ G P + A + +A ++ +++ P Q
Sbjct: 764 SGKVDMSLQLFTQMI-TQGCAPNYVTYRVLINHCCAAGLLDEAHSLLSEMKQTYWPKYVQ 822
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
GY VV+G +++I + + + G + V +++ + G + A + +
Sbjct: 823 GYCSVVQGF--SKKFIASLGLLEELESHGMVSIAPVYGLLIDSFSKAGRLEKALELHKEM 880
Query: 339 AELKS 343
E+ S
Sbjct: 881 MEVSS 885
>gi|225445998|ref|XP_002267263.1| PREDICTED: pentatricopeptide repeat-containing protein At2g18940
[Vitis vinifera]
gi|297735424|emb|CBI17864.3| unnamed protein product [Vitis vinifera]
Length = 821
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 10/220 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL+IL+ ++ C P L +A++ R + AD + M G P+ T ++
Sbjct: 334 ALSILKEMEKNNCPPDLVTYNELVAAYV-RAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ + +A + M + CVP++ +Y+ ++G + + + ++M+ +M N G
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN-GC 451
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYI 294
P + A+ N+ M K V + F E K C GF+ + ++ C I
Sbjct: 452 AP-NSVTWNTMLAMCGNKGMHKYVNRV-FREMKSC--GFEPNRDTFNALIGAYGRCGSQI 507
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
K M + GF P + ++ LA G+W+ A V
Sbjct: 508 DVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESV 547
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVADILLEMKSIGYHPDCGTCN 175
AL ++R + C + L+L ++ L +++ ++L ++ G PD T N
Sbjct: 610 ALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYN 669
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ + + ++LKG+ + PDL SY+ VI +A+ + EM ++
Sbjct: 670 SLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTIS 729
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P A + E+I ++ + C Y++VV+G + ++Y
Sbjct: 730 -GIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKE 788
Query: 296 AGKTVMGMTE 305
A V +TE
Sbjct: 789 AMDFVSNITE 798
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+KS GY T N L+ EA +LK M C PDL +Y+ ++ A A
Sbjct: 306 LKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGF 365
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ + + M+ G+MP V A + KA+ ++ GC
Sbjct: 366 HEEGADFIDTMI-RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGC 416
>gi|90399056|emb|CAJ86105.1| H0103C06.9 [Oryza sativa Indica Group]
gi|125550211|gb|EAY96033.1| hypothetical protein OsI_17906 [Oryza sativa Indica Group]
Length = 515
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
QS ++ M+S G HPD N V+ LC + + + VPD +YS
Sbjct: 188 QSADALISSMRSTGCHPDVVFYNIYVNGLCKVGDFDAVQRTIDESGRNGWVPDAVTYSTY 247
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + +A+ + E+++ MGL P + + + + +MW E++E + G
Sbjct: 248 IAGLCRFGYVEEALRQL-EIMVTMGLQPTVVGLNILLDYVAQDLDMWAGKEVLERCQELG 306
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ Y V++ + R+++ K + ++ P ++ + L G+++ A
Sbjct: 307 FVVDVVTYNTVMDHFCKKRKWLRVLKLFTDLLKKPITPNVQTCNIFISCLCRAGKFQFAK 366
Query: 333 VV 334
V
Sbjct: 367 FV 368
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 7/212 (3%)
Query: 119 ALAILQRTLRS--GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL +L+R S C P SA L + + A + +M + G PD ++
Sbjct: 47 ALRVLRRMRHSSPACAPTAASYTSAMSA-LAKAGRPADAAALFDDMLANGVAPDRCAFSF 105
Query: 177 LVSSLCAIDQLVEAAK-VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-VL 234
L+ + L AA VL MS P Y+ ++ + A + DA++++ EM L
Sbjct: 106 LLHVYSSHLHLPSAAHSVLVWMSRLGLPPTPIDYADLVFSFCRAGRLPDALQLLDEMRAL 165
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N L + AN +M A +I + GC Y + V G + ++
Sbjct: 166 NYPLTLHS--YTPILQVYCANADMQSADALISSMRSTGCHPDVVFYNIYVNGLCKVGDFD 223
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+T+ G++P + GL G
Sbjct: 224 AVQRTIDESGRNGWVPDAVTYSTYIAGLCRFG 255
>gi|302806549|ref|XP_002985024.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
gi|300147234|gb|EFJ13899.1| hypothetical protein SELMODRAFT_121499 [Selaginella moellendorffii]
Length = 570
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 105/243 (43%), Gaps = 9/243 (3%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRL 139
VI EM E + P + L+ + L + A+ + T +GC + +
Sbjct: 116 VIREMEEDY-----GVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTA 170
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ WL + + Q ++ ++ + G P T N L++ LC + +L EA +L+ +
Sbjct: 171 IVD--WLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVD 228
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C PD+ +Y+ +I + +++ +A ++ KEM L ++ + L+A + +
Sbjct: 229 NGCTPDVVTYTSLIDGLGKEKRSFEAYKLFKEMALRGLVLDTVCYTALIRGLLQAGK-IP 287
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A + + + +GC +++G + A + M RG P V ++
Sbjct: 288 QASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAVRIFKSMEARGLAPNEVVYSALI 347
Query: 320 EGL 322
GL
Sbjct: 348 HGL 350
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/162 (22%), Positives = 70/162 (43%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G+ T N L+ + EA +LK + +PD+E+++++I AR+ +
Sbjct: 53 FGFQHSVHTGNALLDVFARTKRHREAGNLLKNELATTFLPDVETWNVLITGYCLAREPEE 112
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A +++EM + G+ P V L + ++ A++ E GC I Y +V
Sbjct: 113 AFAVIREMEEDYGVAPSLKTHNLVLHGLCKSGKVLAAMDHFETTTTNGCTIDIHTYTAIV 172
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + ++ A + +T G P I ++ GL +G
Sbjct: 173 DWLAKNKKIQDAVALMEKITANGCTPTIATYNALLNGLCKMG 214
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/147 (24%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+++ + ++L +MK PD T N L+ LC + A M
Sbjct: 344 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVEAARAFFDEMLE 403
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
A C PD+ +Y+I++ A T+ A + +M + P + + L R++
Sbjct: 404 AGCKPDVYTYNILVSGFCKAGNTDAACGVFDDMS-SSHCSPNVVTYGTLISGLCKRRQLT 462
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
KA + ++ +GCP Y +V+G
Sbjct: 463 KASLYFQHMKERGCPPDSFVYSSLVDG 489
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 94/241 (39%), Gaps = 9/241 (3%)
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149
+ LR + Y L+ LQ+ +P A ++ + GCVP ++ S ++
Sbjct: 261 MALRGLVLDTVCYTALIRGLLQA-GKIPQASSVYKTMTSQGCVP----DVVTLSTMIDGL 315
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ + I M++ G P+ + L+ LC ++ A ++L M A C PD
Sbjct: 316 CKAGRIGAAVRIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDT 375
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+I+I + + A EM L G P + + A + +
Sbjct: 376 ITYNILIDGLCKSGDVEAARAFFDEM-LEAGCKPDVYTYNILVSGFCKAGNTDAACGVFD 434
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ C Y ++ G + R+ A M ERG P V +V+GL G
Sbjct: 435 DMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKSG 494
Query: 327 E 327
+
Sbjct: 495 K 495
Score = 45.1 bits (105), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 41/213 (19%), Positives = 90/213 (42%), Gaps = 1/213 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L+ L + +P + +L + + R ++ A I + G P T N ++ L
Sbjct: 81 LLKNELATTFLPDVETWNVLITGYCLAREPEEAFAVIREMEEDYGVAPSLKTHNLVLHGL 140
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +++ A + ++ C D+ +Y+ ++ ++ +K DAV +M+++ N G P
Sbjct: 141 CKSGKVLAAMDHFETTTTNGCTIDIHTYTAIVDWLAKNKKIQDAVALMEKITAN-GCTPT 199
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ L + +A++++ + GC Y +++G + + A K
Sbjct: 200 IATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKEKRSFEAYKLFK 259
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M RG + ++ GL G+ A+ V
Sbjct: 260 EMALRGLVLDTVCYTALIRGLLQAGKIPQASSV 292
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 4/175 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y+ L+ +S + A A L +GC P +L S + + + + +
Sbjct: 376 ITYNILIDGLCKS-GDVEAARAFFDEMLEAGCKPDVYTYNILVSGFC-KAGNTDAACGVF 433
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M S P+ T L+S LC QL +A+ + M C PD YS ++ + +
Sbjct: 434 DDMSSSHCSPNVVTYGTLISGLCKRRQLTKASLYFQHMKERGCPPDSFVYSSLVDGLCKS 493
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K + EM + G+ Q + +ANR + +AV + + ++G P
Sbjct: 494 GKLEGGCMLFDEMERS-GVANSQTRTRLIFHLCKANR-VDEAVSLFNAIRKEGMP 546
>gi|359491272|ref|XP_003634254.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Vitis vinifera]
Length = 450
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/195 (21%), Positives = 80/195 (41%), Gaps = 42/195 (21%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A+++ C+ +V + + EM GY P+ T N ++ LC + ++ +A + + M
Sbjct: 273 NAFIQVLCKKDNVENAISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEKAMEFMARMKD 332
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
EC P+++ Y++VI A E+
Sbjct: 333 DECEPNVQIYNVVIRYFCDA------------------------------------EEIE 356
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCL--ECREYIL-AGKTVMGMTERGFIPYIKVRQ 316
K + + E + C Y +++ + +Y+L AGK ++ M ERGF+P
Sbjct: 357 KGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLIEMVERGFLPRKFTFN 416
Query: 317 KVVEGLAGVGEWKLA 331
+V++GL G A
Sbjct: 417 RVLDGLLLTGNQDFA 431
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 35/142 (24%), Positives = 68/142 (47%), Gaps = 15/142 (10%)
Query: 119 ALAILQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A+++ + LR G +P IR L +E+ + + MK P+
Sbjct: 288 AISVFEEMLRKGYMPNSTTYNVVIRGLCHVGRMEK------AMEFMARMKDDECEPNVQI 341
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN---DAVEMMK 230
N ++ C +++ + V + M A+C+P+L++Y+I+I AM +K++ A +++
Sbjct: 342 YNVVIRYFCDAEEIEKGLNVFEKMGDADCLPNLDTYNILISAMFVRKKSDYLLTAGKLLI 401
Query: 231 EMVLNMGLMPRQGMVIKVAAAL 252
EMV G +PR+ +V L
Sbjct: 402 EMV-ERGFLPRKFTFNRVLDGL 422
>gi|255660952|gb|ACU25645.1| pentatricopeptide repeat-containing protein [Verbena orcuttiana]
Length = 376
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 77/159 (48%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I ++ A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCPPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCPPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|357508101|ref|XP_003624339.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355499354|gb|AES80557.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 578
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 81/186 (43%), Gaps = 14/186 (7%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLC---AIDQLVEAAKVLKGMSSAECVPDLESY 209
++ +I +M +G HP N L+ LC A + VE KV K Y
Sbjct: 258 EAALEIFRKMDRVGVHPTRSAMNVLIGDLCLMSAKEGSVEKVKVTKTR---------RPY 308
Query: 210 SIVIGAMSTARKT-NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
SI++ M R AVE+ V+N GL+P +V ++ + L +AV+++ +
Sbjct: 309 SILVPNMGGNRAAIQPAVEVF-SAVVNSGLLPSTFVVFRLMSELCRLGNTEEAVKVLRIV 367
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
E K +GY +V++ + R AGK M E G P + V V+ L +G+
Sbjct: 368 EEKKLTCVQEGYSIVIKALCDHRRVEEAGKLFGRMLEIGLKPKLVVYNSVISMLCKLGDL 427
Query: 329 KLATVV 334
A V
Sbjct: 428 DNANGV 433
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/164 (24%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R Q ++ + + G P L+S LC + EA KVL+ + + E
Sbjct: 319 RAAIQPAVEVFSAVVNSGLLPSTFVVFRLMSELCRLGNTEEAVKVLRIVEEKKLTCVQEG 378
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
YSIVI A+ R+ +A ++ M L +GL P+ + V + L ++ A + E +
Sbjct: 379 YSIVIKALCDHRRVEEAGKLFGRM-LEIGLKPKLVVYNSVISMLCKLGDLDNANGVFEIM 437
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ C Y ++ C+ + +A + +M M G+IP+
Sbjct: 438 NKNRCFPDSITYIALIHAQCACKNWKVAYELLMEMLGLGWIPHF 481
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 32/110 (29%), Positives = 50/110 (45%), Gaps = 5/110 (4%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M IG P N ++S LC + L A V + M+ C PD +Y +I A +
Sbjct: 402 MLEIGLKPKLVVYNSVISMLCKLGDLDNANGVFEIMNKNRCFPDSITYIALIHAQCACKN 461
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
A E++ EM L +G +P V + LR + ++ ++ LERK
Sbjct: 462 WKVAYELLMEM-LGLGWIPHFHTYNLVDSLLREHDQL----DLCHKLERK 506
>gi|147788022|emb|CAN69338.1| hypothetical protein VITISV_032632 [Vitis vinifera]
Length = 585
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/189 (25%), Positives = 81/189 (42%), Gaps = 4/189 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L+ LC L EA +LK + + PD++ Y+IV
Sbjct: 399 QDAIALFHEMVAHGQIPDLATYRILLDYLCKKSHLDEAMALLKTIEGSNMDPDIQIYTIV 458
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + A ++ + + GL P + L + +A ++ ++ G
Sbjct: 459 IDGMCRAGELEAARDIFSNLS-SKGLRPNVRTYTIMINGLCRRGLLDEANKLFMEMDGNG 517
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
C Y + +G L+ +E + A + + M RGF + +VE L + KL
Sbjct: 518 CSPDGCTYNTITQGLLQNKEALRAIQLLQEMLARGFSADVSTTTLLVEMLC---DDKLDQ 574
Query: 333 VVRQRFAEL 341
V+Q +E
Sbjct: 575 SVKQILSEF 583
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/183 (20%), Positives = 81/183 (44%), Gaps = 4/183 (2%)
Query: 143 SAWLERRC-QSQ--SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C QS+ + M GY P+ + N L++ C I ++ +A + + M
Sbjct: 316 NALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQRMDKATYLFEEMCQ 375
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
E +P+ +Y+ ++ + + DA+ + EMV + G +P + L +
Sbjct: 376 KELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAH-GQIPDLATYRILLDYLCKKSHLD 434
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ +++ +E Q Y +V++G E A ++ +G P ++ ++
Sbjct: 435 EAMALLKTIEGSNMDPDIQIYTIVIDGMCRAGELEAARDIFSNLSSKGLRPNVRTYTIMI 494
Query: 320 EGL 322
GL
Sbjct: 495 NGL 497
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/219 (20%), Positives = 97/219 (44%), Gaps = 14/219 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ +L+ + C P +++ ++ ++ C+ + V ++ +M G PD T
Sbjct: 191 AIRLLRSMEQGNCQP----DVVVYTSIIDSLCKDRQVTEAFNLFSKMVGQGISPDIFTYT 246
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ SLC + + +L M +++ +PD+ +S V+ A+ K +A +++ M++
Sbjct: 247 SLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDALCKEGKITEAHDVVDMMIIR 306
Query: 236 MGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G+ P V+ A + + EM +AV++ + + G Y ++ G + +
Sbjct: 307 -GVEPN---VVTYNALMDGHCLQSEMDEAVKVFDTMVHNGYAPNVISYNTLINGYCKIQR 362
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M ++ IP ++ GL VG + A
Sbjct: 363 MDKATYLFEEMCQKELIPNTVTYNTLMHGLCHVGRLQDA 401
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 63/321 (19%), Positives = 113/321 (35%), Gaps = 67/321 (20%)
Query: 53 LLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
LL S + Q P FS + +F + ++ ++ SF L +RP A+ L
Sbjct: 73 LLTSIAKTKQYPTVFSLSNQMDSFGIPPDVYTLNILINSFCHL---NRPGFAFSVLAKIL 129
Query: 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIG 166
L P L R L C + D L +M G
Sbjct: 130 KLGLQPDTATFTTLIRGL----------------------CVEGKIGDALHLFDKMIGEG 167
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I ++ R+ +A
Sbjct: 168 FQPNVVTYGTLINGLCKVGNTNAAIRLLRSMEQGNCQPDVVVYTSIIDSLCKDRQVTEAF 227
Query: 227 EMMKEMV----------------------------------LNMGLMPRQGMVIKVAAAL 252
+ +MV +N +MP + V AL
Sbjct: 228 NLFSKMVGQGISPDIFTYTSLIHSLCNLCEWKHVTTLLNQMINSKIMPDVVIFSTVVDAL 287
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPY 311
++ +A ++++ + +G Y +++G CL+ E A K M G+ P
Sbjct: 288 CKEGKITEAHDVVDMMIIRGVEPNVVTYNALMDGHCLQ-SEMDEAVKVFDTMVHNGYAPN 346
Query: 312 IKVRQKVVEGLAGVGEWKLAT 332
+ ++ G + AT
Sbjct: 347 VISYNTLINGYCKIQRMDKAT 367
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 7/182 (3%)
Query: 57 FEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIA-YDYLLSYTLQ 111
FEE CQ PN ++ + + + + + F + + P +A Y LL Y +
Sbjct: 370 FEEMCQKELIPNTVTYNTLMHGLCHVGRLQDAIALFHEMVAHGQIPDLATYRILLDYLCK 429
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171
H L A+A+L+ S P QI ++ R + ++ DI + S G P+
Sbjct: 430 KSH-LDEAMALLKTIEGSNMDPDIQIYTIVIDGMC-RAGELEAARDIFSNLSSKGLRPNV 487
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T +++ LC L EA K+ M C PD +Y+ + + ++ A+++++E
Sbjct: 488 RTYTIMINGLCRRGLLDEANKLFMEMDGNGCSPDGCTYNTITQGLLQNKEALRAIQLLQE 547
Query: 232 MV 233
M+
Sbjct: 548 ML 549
>gi|255660978|gb|ACU25658.1| pentatricopeptide repeat-containing protein [Verbena rigida]
Length = 373
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
G M +I + N+ +A +++ L KG G Y +++ G C ++
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNKMFGEAYNLVKELLDKGLDPGVITYSMLMXGL--CLDH 248
Query: 294 IL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 249 XVERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 40/198 (20%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 133 SAMINGLCKEANLDRAVSVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGT 192
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P + +Y+ +I + + +A ++KE+ L+ GL P + L + +
Sbjct: 193 MHCSPTIITYNTLINGLCKNKMFGEAYNLVKEL-LDKGLDPGVITYSMLMXGLCLDHXVE 251
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+++ + KG Q + +++ G + LA M P + ++
Sbjct: 252 RALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLXFDMNRWKCAPNLVSHNTLM 311
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 312 EGFYKDGDIRNALVIWAR 329
>gi|147825385|emb|CAN75494.1| hypothetical protein VITISV_030525 [Vitis vinifera]
Length = 821
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 96/220 (43%), Gaps = 10/220 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL+IL+ ++ C P L +A++ R + AD + M G P+ T ++
Sbjct: 334 ALSILKEMEKNNCPPDLVTYNELVAAYV-RAGFHEEGADFIDTMIRKGIMPNAITYTTVI 392
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ + +A + M + CVP++ +Y+ ++G + + + ++M+ +M N G
Sbjct: 393 NAYGKAGKEDKALSFFRQMKESGCVPNVCTYNAILGMLGKKSRLEEMIDMLCDMRSN-GC 451
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYI 294
P + A+ N+ M K V + F E K C GF+ + ++ C I
Sbjct: 452 AP-NSVTWNTMLAMCGNKGMHKYVNRV-FREMKSC--GFEPNRDTFNALIGAYGRCGSQI 507
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
K M + GF P + ++ LA G+W+ A V
Sbjct: 508 DVVKMYEEMIKAGFTPCVTTYNALLNALARRGDWEAAESV 547
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/190 (22%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVADILLEMKSIGYHPDCGTCN 175
AL ++R + C + L+L ++ L +++ ++L ++ G PD T N
Sbjct: 610 ALMGMERAFQEFCKHGYKPDLVLFNSMLSIFAKNKMYDRAHEMLRLIRESGLQPDLVTYN 669
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ + + ++LKG+ + PDL SY+ VI +A+ + EM ++
Sbjct: 670 SLMDMYARGGECWKGEEILKGIQKSGGKPDLVSYNTVIKGFCRQGLMQEAIRTLSEMTIS 729
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P A + E+I ++ + C Y++VV+G + ++Y
Sbjct: 730 -GIRPCIVTYNTFVAGYSGKGMFSEVEEVISYMIQHDCRPNELTYKIVVDGYCKGKKYKE 788
Query: 296 AGKTVMGMTE 305
A V +TE
Sbjct: 789 AMDFVSNITE 798
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 29/112 (25%), Positives = 45/112 (40%), Gaps = 1/112 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+KS GY T N L+ EA +LK M C PDL +Y+ ++ A A
Sbjct: 306 LKSEGYVAGTFTYNSLLQVFGKAGIYSEALSILKEMEKNNCPPDLVTYNELVAAYVRAGF 365
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ + + M+ G+MP V A + KA+ ++ GC
Sbjct: 366 HEEGADFIDTMI-RKGIMPNAITYTTVINAYGKAGKEDKALSFFRQMKESGC 416
>gi|3193306|gb|AAC19289.1| contains similarity to Arabidopsis membrane-associated
salt-inducible-like protein (GB:AL021637) [Arabidopsis
thaliana]
Length = 991
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/209 (22%), Positives = 90/209 (43%), Gaps = 5/209 (2%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L+ + L P P+ + + R Q ++ + G P+ + N L+
Sbjct: 139 LSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQ 198
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+ C D L A ++ M + VPD++SY I+I + N A+E++ +M LN G +
Sbjct: 199 AFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDM-LNKGFV 257
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE--YILAG 297
P + + +L ++ +A +++ ++ KGC Y ++ G CRE + A
Sbjct: 258 PDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGF--CREDRAMDAR 315
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
K + M G P + ++ GL G
Sbjct: 316 KVLDDMLSNGCSPNSVSYRTLIGGLCDQG 344
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 119 ALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L L G VP LL+S L R+ Q + +L MK G +PD N +
Sbjct: 244 AMELLDDMLNKGFVPDRLSYTTLLNS--LCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C D+ ++A KVL M S C P+ SY +IG + ++ + ++EM+ + G
Sbjct: 302 ILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI-SKG 360
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
P + + + ++ +A +++E + + G + +E+V+
Sbjct: 361 FSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVI 407
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/217 (22%), Positives = 84/217 (38%), Gaps = 39/217 (17%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A + + L VP V ++L+ R+ Q ++L +M + G+ PD +
Sbjct: 206 LSIAYQLFGKMLERDVVPDVDSYKILIQGFC--RKGQVNGAMELLDDMLNKGFVPDRLSY 263
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC QL EA K+L M C PDL Y+ +I + DA +++ +M+
Sbjct: 264 TTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS 323
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N GC Y ++ G + +
Sbjct: 324 N------------------------------------GCSPNSVSYRTLIGGLCDQGMFD 347
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
K + M +GF P+ V +V+G G+ + A
Sbjct: 348 EGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGKVEEA 384
>gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470,
mitochondrial-like [Cucumis sativus]
Length = 621
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 64/147 (43%), Gaps = 1/147 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G PD L++ ++ +LK M + C PD ++Y+ +I M+ R
Sbjct: 407 EMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCPPDGKTYNALIKLMTNKR 466
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+DAV + K+M+ N G+ P + + R V + ++ KGC Y
Sbjct: 467 MPDDAVRIYKKMIEN-GIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSY 525
Query: 281 EVVVEGCLECREYILAGKTVMGMTERG 307
V + G + AGK + M E+G
Sbjct: 526 TVFIGGLISLGRCAEAGKYLEEMIEKG 552
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 72/180 (40%), Gaps = 4/180 (2%)
Query: 149 RCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RC+ +S A L E MK+ G PD + LV C ++ EA + + M A C PD
Sbjct: 359 RCKKRSDAIKLFEVMKAKGPSPDVKSYTILVRDFCKQAKMKEAVQYFEEMQGAGCRPDAA 418
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM-WKAVEMIE 266
Y+ +I ++ + ++KEM N P G L N+ M AV + +
Sbjct: 419 IYTCLITGFGNQKRMDTVYGLLKEMKANG--CPPDGKTYNALIKLMTNKRMPDDAVRIYK 476
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ G Y ++++ + R Y + M +G P + GL +G
Sbjct: 477 KMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAAWDEMKLKGCCPDDNSYTVFIGGLISLG 536
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 73/160 (45%), Gaps = 9/160 (5%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ D T N +++ L Q +L+ M+ E + +E++++ A + A++ A
Sbjct: 204 GFAHDSKTYNTMMTILGKTRQFETMVSLLEEMAEKELLT-METFTVCFKAFAAAKERKKA 262
Query: 226 V---EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
V E+MK+ +G+ ++ + A + +E A+ + E L + P Q Y V
Sbjct: 263 VGVLELMKKYKYKVGVETINCLLDSLGRA-KLGKE---ALTIFEKLHGRFTP-NLQTYTV 317
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
++ G R + AGK M + F P I ++EGL
Sbjct: 318 LLNGWCRVRNLMEAGKIWNQMIDEDFKPDIVAHNTMLEGL 357
>gi|356573667|ref|XP_003554979.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial-like [Glycine max]
Length = 390
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 48/198 (24%), Positives = 96/198 (48%), Gaps = 10/198 (5%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S + V+D++ EMK G D T N L+S LC ++ EA ++L+ M + +
Sbjct: 194 CKSGDCKRVSDLVKEMKRSGCDMDVSTYNLLLSCLCKNGKIDEAWQLLEAMEKNYGLTNA 253
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
S+ I+I + R+ + ++++ +M L G+ P ++ AA +++ E K E E
Sbjct: 254 HSFDILINFLCKRRQFDSVLKLLDKMFLK-GIEPS---ILTHAAIIKSYFESGKYEEAHE 309
Query: 267 FLERKGCPIGFQ---GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
++ + + Y ++ L+ +LA K + M ++G P V +K+ + L
Sbjct: 310 YVIGSANRLSYSSNANYGLLATLQLKNGNVLLACKVLSEMMDKGLKPNFSVYKKIRKHLE 369
Query: 324 GVGEWKLATVVRQRFAEL 341
E L+ + +R++ L
Sbjct: 370 KKDEKDLSLELLRRYSSL 387
>gi|357499981|ref|XP_003620279.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495294|gb|AES76497.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 585
Score = 54.3 bits (129), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 31/166 (18%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T N L+ C + ++ A + M+ PD+ SY+I+I +K + A
Sbjct: 295 GIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCKIKKVDKA 354
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EM ++P + L + + A+++++ + +G P Y +++
Sbjct: 355 MNLFNEMHCK-NIIPNVVTYNSLIDGLSKSGRISYALQLVDQMHDRGVPPNILTYNSIID 413
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + A + ++G P + +++GL V + +
Sbjct: 414 ALFKTHQVDKAIALITKFKDQGIQPSMYTYTILIDGLCKVEGYDIT 459
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 86/196 (43%), Gaps = 11/196 (5%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
CQ ++ ++G+H D + L+ LC + + A +L+ + + Y
Sbjct: 139 CQIHQAFLFHDKLVALGFHLDQVSYGTLIHGLCKVGETRAALDLLQRVDGKLVQLNAVMY 198
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ VI M + NDA ++ EMV + G+ P V+ +A + + K + I+
Sbjct: 199 NTVIYGMCKDKHVNDAFDLYSEMV-SKGISPN---VVTYSALISGFFVVGKLKDAIDLFN 254
Query: 270 R----KGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAG 324
+ P G+ + ++V+G + R+ + GKTV M ++G IP + +++G
Sbjct: 255 KIILENIKPDGYT-FNILVDGFCKDRK-MKEGKTVFAMMMKQGIIPDVVTYNSLMDGYCL 312
Query: 325 VGEWKLATVVRQRFAE 340
V E A + A+
Sbjct: 313 VKEVNTAKSIFNTMAQ 328
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 20/222 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +LQR G + Q+ ++ + + C+ + V D + EM S G P+ T +
Sbjct: 179 ALDLLQRV--DG--KLVQLNAVMYNTVIYGMCKDKHVNDAFDLYSEMVSKGISPNVVTYS 234
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S + +L +A + + PD +++I++ RK MKE
Sbjct: 235 ALISGFFVVGKLKDAIDLFNKIILENIKPDGYTFNILVDGFCKDRK-------MKEGKTV 287
Query: 236 MGLMPRQGMVIKVAA--ALRAN----REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+M +QG++ V +L +E+ A + + + G + Y +++ G +
Sbjct: 288 FAMMMKQGIIPDVVTYNSLMDGYCLVKEVNTAKSIFNTMAQGGVNPDIRSYNILINGFCK 347
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ A M + IP + +++GL+ G A
Sbjct: 348 IKKVDKAMNLFNEMHCKNIIPNVVTYNSLIDGLSKSGRISYA 389
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/98 (23%), Positives = 43/98 (43%), Gaps = 5/98 (5%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY T N ++ C EA +L M + C+P+ +Y I I ++ + + A
Sbjct: 455 GYDITVNTYNVMIHGFCKKGLFDEALSLLSKMKDSSCIPNAVTYEITIRSLLDNNENDKA 514
Query: 226 VEMMKEMVLNMGLMPRQGMV----IKVAAALRANREMW 259
++ +EM+ GL+ R +K+ +L + W
Sbjct: 515 EKLFREMI-TRGLLNRSASYPCSSMKIHQSLTMVQHTW 551
>gi|242079087|ref|XP_002444312.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
gi|241940662|gb|EES13807.1| hypothetical protein SORBIDRAFT_07g020010 [Sorghum bicolor]
Length = 695
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 62/118 (52%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
+P A+AIL + VP Q+ + A++E Q+ +L+E MKS G T
Sbjct: 491 IPEAVAILDDMIHKDVVPNAQVYNSIIDAYIESGGTEQAF--LLVEKMKSSGVSASIFTY 548
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ LC Q+ EA +++ +++ PD+ SY+ +I A T+ A+E+++EM
Sbjct: 549 NLLLKGLCKNSQIDEAEELIYNLTNQGLRPDVVSYNTIISACCNKGDTDRALELLQEM 606
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/198 (22%), Positives = 86/198 (43%), Gaps = 13/198 (6%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L+ + +G VP I L + + + R Q I +MKS PD T N L++ L
Sbjct: 357 VLEMLVHTGLVPTTAIYNTLINGYCQVR-DLQGAFSIFEQMKSRHIRPDHITYNALINGL 415
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C ++ + EA ++ M + P +E+++ +I A A + ++ +M + G+
Sbjct: 416 CKMEMITEAEDLVMEMEKSGVDPSVETFNTLIDAYGRAGQLEKCFTVLSDMQ-DKGIKSN 474
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
V A N ++ +AV +++ + K Q Y +++ +E
Sbjct: 475 VISFGSVVKAFCKNGKIPEAVAILDDMIHKDVVPNAQVYNSIIDAYIES----------- 523
Query: 302 GMTERGFIPYIKVRQKVV 319
G TE+ F+ K++ V
Sbjct: 524 GGTEQAFLLVEKMKSSGV 541
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP--DLESYSIVIGAMSTARKTN 223
G PD N V + A L EA +L+ M +E P D SY++VI + + K +
Sbjct: 153 GARPDTFAWNKAVQACVAAGDLDEALAMLRRMGRSEGAPPPDAFSYNVVIAGLWRSGKGS 212
Query: 224 DAVEMMKEMVLNMGLMPRQ 242
DA+++ EMV + G+ P Q
Sbjct: 213 DALKVFDEMV-DRGVAPNQ 230
>gi|225457182|ref|XP_002280557.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74850,
chloroplastic [Vitis vinifera]
Length = 869
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V+++L EM+S G PD + N L+ + + EA V + M A CVP+ +YSI+
Sbjct: 304 EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 363
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +D ++ EM ++ P + + V + + +
Sbjct: 364 LNLYGRHGRYDDVRDLFLEMKVS-NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 422
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ YE ++ C + + A K ++ M E+G +P K V+E ++ A
Sbjct: 423 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEAL 482
Query: 333 VVRQRFAELKS 343
V E+ S
Sbjct: 483 VAFNTMNEVGS 493
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 59/137 (43%), Gaps = 15/137 (10%)
Query: 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
+R + ++ LL Q H A + TL S C RR
Sbjct: 227 ARGGLDWEELLGLFAQMRHEGIQADIVTYNTLLSACA---------------RRGLGDEA 271
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+ M G PD T +YLV + +++L + +++LK M S PD+ SY++++ A
Sbjct: 272 EMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDITSYNVLLEA 331
Query: 216 MSTARKTNDAVEMMKEM 232
+ + +A+ + ++M
Sbjct: 332 HAQSGSIKEAMGVFRQM 348
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 77/172 (44%), Gaps = 6/172 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +EM+ PD T ++S C + E+ + + + +P + Y
Sbjct: 547 QFEEAIKAYVEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYC 606
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAALRANREMWKAVEMI-EF 267
+++ + A + +DA +++ EM N Q G +I+ +N W+ VE + E
Sbjct: 607 MMLAVYAKADRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSN---WQMVEYVFEK 663
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
L+ +GC +G + Y ++E + A + + T+RG P + + K+V
Sbjct: 664 LKSEGCSLGVRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLV 715
>gi|147858028|emb|CAN80345.1| hypothetical protein VITISV_003133 [Vitis vinifera]
Length = 1051
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/195 (25%), Positives = 85/195 (43%), Gaps = 4/195 (2%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC 150
++ R RP LL L SL A ++ GC P + +L+S L RR
Sbjct: 580 IQKRHRPNAVTYALLMEGLCSLGKYKEAKKMMFDMDYQGCKPRLLNFGVLMSD--LGRRG 637
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ +LLEMK + PD T N L++ LC + EA KVL M C P+ +Y
Sbjct: 638 RIDDXKTLLLEMKRRRFKPDVVTYNILINXLCKEGRAXEAYKVLVEMQVGGCEPNAATYR 697
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+++ ++++ M++ G PR + L N ++ A ++E +E+
Sbjct: 698 MMVDGFCQVEDFEGGLKVLSAMLM-CGHCPRLESFCDLVVGLLKNGKIDGACFVLEEMEK 756
Query: 271 KGCPIGFQGYEVVVE 285
+ + +E +V+
Sbjct: 757 RKMRFHLEAWEALVK 771
>gi|359475765|ref|XP_002273555.2| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Vitis vinifera]
Length = 935
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G PD C+ L+ + E ++ M S +L +Y+++I +
Sbjct: 234 EMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFG 293
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K A E++K M+ +G P + M +A+E+++ +E++ Y
Sbjct: 294 KMEKAAEILKGMI-TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 352
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ G C++ LA K + MT G P + V ++ G A G
Sbjct: 353 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 398
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I + ++G PD TC+ + L ++ EA KV + VPD+ +YS +I
Sbjct: 511 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFC 570
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A E+ EM L G+ P + + L + ++ +A ++ + + KG
Sbjct: 571 KQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 629
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + A M +G P+ V +V G G+ + A
Sbjct: 630 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKA 683
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 149 RCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
C+ S+A+ LLE M G P+ + L+ + ++ EA ++L GMS + PD+
Sbjct: 361 HCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF 420
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
Y+ +I +S A K +A + E + GL P +M +A + +
Sbjct: 421 CYNAIISCLSKAGKMEEASTYLLE-IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 479
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ G Y V++ G + + A + G +P ++ + GL G
Sbjct: 480 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 539
Query: 328 WKLATVVRQRFAELK 342
+ A V F+ELK
Sbjct: 540 VQEALKV---FSELK 551
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 1/186 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + + + LLE++ G PD T + ++ EAAK M +P+
Sbjct: 429 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 488
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y+++I A +A+ + + + +G++P L N + +A+++
Sbjct: 489 NPLYTVLINGHFKAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEALKVF 547
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
L+ KG Y ++ G + E A + M +G P I + +V+GL
Sbjct: 548 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 607
Query: 326 GEWKLA 331
G+ + A
Sbjct: 608 GDIQRA 613
>gi|297841889|ref|XP_002888826.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp.
lyrata]
gi|297334667|gb|EFH65085.1| hypothetical protein ARALYDRAFT_894959 [Arabidopsis lyrata subsp.
lyrata]
Length = 868
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
IG+ P + NYL+ +LCA + + +A VLKG +++S + A+ K
Sbjct: 410 IGFAPTATSYNYLIHTLCANESVEQAYDVLKGAMDRGHFLGGKTFSTLTNALCWKGKP-- 467
Query: 225 AVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+M KE+V+ L+P++ K+ +AL ++ A+ + E + G F+ +
Sbjct: 468 --DMAKELVIAAAERDLLPKRIAGCKIISALCDIGKVEDALMINELFNKSGVDTSFKMFT 525
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G + +A K ++ M E+G+ P + + V++
Sbjct: 526 SLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYRNVIQ 564
>gi|115461298|ref|NP_001054249.1| Os04g0675600 [Oryza sativa Japonica Group]
gi|38344930|emb|CAE54539.1| OSJNBa0018M05.21 [Oryza sativa Japonica Group]
gi|113565820|dbj|BAF16163.1| Os04g0675600 [Oryza sativa Japonica Group]
Length = 540
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
QS ++ M+S G HPD N V+ LC + + + VPD +YS
Sbjct: 213 QSADALISSMRSTGCHPDVVFYNIYVNGLCKVGDFDAVQRTIDESGRNGWVPDAVTYSTY 272
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + +A+ + E+++ MGL P + + + + +MW E++E + G
Sbjct: 273 IAGLCRFGYVEEALRQL-EIMVTMGLQPTVVGLNILLDYVAQDLDMWAGKEVLERCQELG 331
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ Y V++ + R+++ K + ++ P ++ + L G+++ A
Sbjct: 332 FVVDVVTYNTVMDHFCKKRKWLRVLKLFTDLLKKPITPNVQTCNIFISCLCRAGKFQFAK 391
Query: 333 VV 334
V
Sbjct: 392 FV 393
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 49/212 (23%), Positives = 82/212 (38%), Gaps = 7/212 (3%)
Query: 119 ALAILQRTLRS--GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL +L+R S C P SA L + + A + +M + G PD ++
Sbjct: 72 ALRVLRRMRHSSPACAPTAASYTSAMSA-LAKAGRPADAAALFDDMLANGVAPDRCAFSF 130
Query: 177 LVSSLCAIDQLVEAAK-VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-VL 234
L+ + L AA VL MS P Y+ ++ + A + DA++++ EM L
Sbjct: 131 LLHVYSSHLHLPSAAHSVLVWMSRLGLPPTPIDYADLVFSFCRAGRLPDALQLLDEMRAL 190
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N L + AN +M A +I + GC Y + V G + ++
Sbjct: 191 NYPLTLHS--YTPILQVYCANADMQSADALISSMRSTGCHPDVVFYNIYVNGLCKVGDFD 248
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+T+ G++P + GL G
Sbjct: 249 AVQRTIDESGRNGWVPDAVTYSTYIAGLCRFG 280
>gi|359488009|ref|XP_003633686.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 579
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 96/227 (42%), Gaps = 8/227 (3%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA 156
P I ++L + L+ + A ++L + L+ G P L+ ++E +
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGIYVEGKIGE--AL 151
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ +M G+ PD T L++ LC + A ++L M C P++ +Y+ +I ++
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCP 274
R+ +A + EMV G+ P + AL N WK V + E ++ K P
Sbjct: 212 CKDRQVTEAFNLFSEMVTK-GISPDIFTYNSLIHAL-CNLCEWKHVATLLNEMVDSKIMP 269
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ VV+ + + A V M +RG P + +++G
Sbjct: 270 -DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDG 315
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 58/259 (22%), Positives = 109/259 (42%), Gaps = 19/259 (7%)
Query: 93 RPRSRPK-------IAYDYLLSYTL---QSLH--PLPLALAILQRTLRSGCVP--VPQIR 138
RP SRP +A+ LS+ +SLH + A++ R LR P V +
Sbjct: 7 RPSSRPSGTQMLSLLAHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNK 66
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
LL S A ++ S++ +M S G P+ T + L++S C ++++ A VL +
Sbjct: 67 LLTSIAKMKHHSTLLSLSH---QMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
PD +++ +I + K +A+ + +M+ G P + L
Sbjct: 124 KLGHQPDTATFTTLIRGIYVEGKIGEALHLFDKMI-GEGFRPDVVTYGTLINGLCKVGNT 182
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ ++ + +K C Y +++ + R+ A M +G P I +
Sbjct: 183 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 242
Query: 319 VEGLAGVGEWK-LATVVRQ 336
+ L + EWK +AT++ +
Sbjct: 243 IHALCNLCEWKHVATLLNE 261
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 41/189 (21%), Positives = 77/189 (40%), Gaps = 8/189 (4%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D++ +M G P+ T L+ C + ++ EA KV M C+P++ SY+ +I
Sbjct: 292 DVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKVFDTMVCKGCMPNVISYNTLINGY 351
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI- 275
++ + A+ + EM L+P + L + A+ + F E C
Sbjct: 352 CKIQRIDKAMYLFGEMC-RQELIPDTVTYSTLIHGLCHVERLQDAIAL--FHEMVACSQI 408
Query: 276 -GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++++ + R A + + P I+V ++G+ GE + A
Sbjct: 409 PNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAIDGMCRAGELEAA--- 465
Query: 335 RQRFAELKS 343
R F+ L S
Sbjct: 466 RDLFSNLSS 474
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
+ Y LL Y ++ + L A+A+L+ S P Q+ ++ ++ C++ ++
Sbjct: 412 VTYRILLDYLCKNRY-LAEAMALLKAIEGSNLDPDIQV----NNIAIDGMCRAGELEAAR 466
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + S G PD T + +++ LC L EA+K+ + M C + Y+ +
Sbjct: 467 DLFSNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGF 526
Query: 217 STARKTNDAVEMMKEMV 233
+T+ A+++++EMV
Sbjct: 527 LRNNETSRAIQLLQEMV 543
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 4/169 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S + C + + D + EM + P+ T L+ LC L EA +LK +
Sbjct: 380 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 439
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD++ +I I M A + A ++ + + GL P + L +
Sbjct: 440 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLS-SKGLQPDVWTYSIMINGLCRRGLLD 498
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A ++ ++ GC + Y + G L E A + + M RGF
Sbjct: 499 EASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGF 547
>gi|302142966|emb|CBI20261.3| unnamed protein product [Vitis vinifera]
Length = 509
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/165 (21%), Positives = 77/165 (46%), Gaps = 4/165 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G +PD CN ++ +LC ++ EA +VL+ M+ +C PD+ +Y+ +I + ++
Sbjct: 283 MWEKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQR 342
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
E++ +M G +P L++ ++ + ++E +ER GC + Y
Sbjct: 343 FEKVYELLDDME-QKGCLPN---ARTYGYLLKSTKKPEEVPGILERMERNGCRMNSDCYN 398
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++++ ++ + T+ M G P + ++ GL G
Sbjct: 399 LILKLYMDWGYELKLRSTLDEMERNGMGPDQRTYTIMIHGLYDKG 443
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/136 (19%), Positives = 65/136 (47%), Gaps = 1/136 (0%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N +++ C + L EA + + +++C PD +Y I I +++ A K + AV++ + M
Sbjct: 226 NVILNGWCVLGSLREAKRFWNDIITSKCKPDKFTYGIFINSLTKAGKLSTAVKLFQAM-W 284
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G P + + AL + + +A+E++ + + C Y +++ + + +
Sbjct: 285 EKGCNPDVAICNCIIDALCFKKRIPEALEVLREMNERDCQPDVATYNSLIKHLCKIQRFE 344
Query: 295 LAGKTVMGMTERGFIP 310
+ + M ++G +P
Sbjct: 345 KVYELLDDMEQKGCLP 360
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 84/213 (39%), Gaps = 8/213 (3%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVAD 157
K Y ++ +L L A+ + Q GC P I ++ + ++R +
Sbjct: 257 KFTYGIFIN-SLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPE--ALE 313
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM PD T N L+ LC I + + ++L M C+P+ +Y + +
Sbjct: 314 VLREMNERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGCLPNARTYGYL---LK 370
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +K + +++ M N M + + + E+ K ++ +ER G
Sbjct: 371 STKKPEEVPGILERMERNGCRMNSDCYNLILKLYMDWGYEL-KLRSTLDEMERNGMGPDQ 429
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ Y +++ G + A MT G +P
Sbjct: 430 RTYTIMIHGLYDKGRMDDALSYFKQMTLMGMVP 462
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 1/105 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T ++SL +L A K+ + M C PD+ + +I A+ ++ +A+E+
Sbjct: 255 PDKFTYGIFINSLTKAGKLSTAVKLFQAMWEKGCNPDVAICNCIIDALCFKKRIPEALEV 314
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
++EM P + L + K E+++ +E+KGC
Sbjct: 315 LREMN-ERDCQPDVATYNSLIKHLCKIQRFEKVYELLDDMEQKGC 358
>gi|115482712|ref|NP_001064949.1| Os10g0495200 [Oryza sativa Japonica Group]
gi|78708847|gb|ABB47822.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639558|dbj|BAF26863.1| Os10g0495200 [Oryza sativa Japonica Group]
Length = 782
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 5/166 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
IL+ R C+ ++ S E R +S+ + D+++ IG PD T N L+
Sbjct: 469 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR---IGVKPDIITYNTLIDG 525
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C ++ EA K+L M S PD+ +Y +I + +DA+ + KEMV + G+ P
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV-SSGVSP 584
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L R A E+ + + G + Y +++ G
Sbjct: 585 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 6/175 (3%)
Query: 116 LPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L L A L ++ G V LL ++R S ++ +L M +G PD +
Sbjct: 108 LDLGFAALGNVVKKGFRVDAITFTPLLKGLCADKR-TSDAMDIVLRRMTELGCIPDVFSY 166
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSS---AECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
N L+ LC ++ EA ++L M+ PD+ SY+ V+ ++ A E
Sbjct: 167 NNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYSTYHE 226
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
M L+ G++P + AAL + M KA+E++ + + G Y ++ G
Sbjct: 227 M-LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 280
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 3/207 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQ-SVADILLEMKSIGYHPDCGTCNYLVS 179
+L+R GC+P V LL E R Q + ++ + + G PD + N +++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+A M +PD+ +YS +I A+ A+ + A+E++ MV N G+M
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVM 268
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
P + ++ + +A+ ++ + G Y ++ + A K
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 300 VMGMTERGFIPYIKVRQKVVEGLAGVG 326
MT+RG P I + +++G A G
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKG 355
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A+ +L +++G +P + ++ L C S + L +M+S G P+ T +
Sbjct: 255 AMEVLNTMVKNGVMP----DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 310
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + EA K+ M+ PD+ +Y ++ +T + ++ MV N
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + + A ++ +A+ + + + G Y V++ +
Sbjct: 371 -GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 429
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M + G P I V ++ GL +W A
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
>gi|221554580|gb|ACM24117.1| PPR protein [Raphanus sativus]
Length = 688
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/203 (20%), Positives = 85/203 (41%), Gaps = 4/203 (1%)
Query: 138 RLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ SA ++ C+ +D + EM+ G PD T N ++ C+ + +A ++L
Sbjct: 254 NVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSSGRWSDAEQLL 313
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M + PD+ +Y+ +I A K +A E+ EM L G++P +
Sbjct: 314 QEMLERKISPDVVTYNALINAFVKEGKFFEAAELYDEM-LPRGIIPNTITYNSMIDGFCK 372
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ A +M + KGC + +++G + + + M RG +
Sbjct: 373 QDRLDAAEDMFYLMATKGCSPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVT 432
Query: 315 RQKVVEGLAGVGEWKLATVVRQR 337
++ G VG+ A + Q+
Sbjct: 433 YNTLIHGFCLVGDLNAALDLSQQ 455
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/274 (20%), Positives = 109/274 (39%), Gaps = 16/274 (5%)
Query: 77 HRIKVIDEMLESFIP-LRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
H IK +++ ++ F LR R P + + L+ ++ P L +++ Q+ R
Sbjct: 55 HEIKGLEDAIDLFSDMLRSRPLPSVVDFCKLMGVVVRMERP-DLVISLYQKMERK----- 108
Query: 135 PQIRLLLSSAWLERRCQSQS-----VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
QIR + S + +C ++ +G HPD T L+ LC D++ E
Sbjct: 109 -QIRCDIYSFNILIKCFCSCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A M C P++ +++ ++ + + +AV ++ M+ + GL P Q +
Sbjct: 168 ALDFFHQMFETTCRPNVVTFTTLMNGLCREGRIVEAVALLDRMMED-GLQPTQITYGTIV 226
Query: 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ + A+ ++ +E I Y +++ + + A M E+G
Sbjct: 227 DGMCKKGDTVSALNLLRKMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGI 286
Query: 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
P + ++ G G W A + Q E K
Sbjct: 287 FPDLFTYNSMIVGFCSSGRWSDAEQLLQEMLERK 320
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 48/240 (20%), Positives = 92/240 (38%), Gaps = 62/240 (25%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
A++ EM G P+ T N ++ C D+L A + M++ C PD+ +++ +I
Sbjct: 345 AELYDEMLPRGIIPNTITYNSMIDGFCKQDRLDAAEDMFYLMATKGCSPDVFTFTTLIDG 404
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA----------------AALRANREMW 259
A++ +D +E++ EM PR+G+V AAL +++M
Sbjct: 405 YCGAKRIDDGMELLHEM-------PRRGLVANTVTYNTLIHGFCLVGDLNAALDLSQQMI 457
Query: 260 -------------------------KAVEMIEFLERKGCPIG----FQG-------YEVV 283
A+EM + +++ + F G Y ++
Sbjct: 458 SSGVCPDIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNGVEPDVLTYNIL 517
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ G + +++ A + M RG +P +++GL AT Q F + S
Sbjct: 518 ICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT---QMFVSMGS 574
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 78/186 (41%), Gaps = 21/186 (11%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
+P+ F+F + K ID+ +E +P R + Y+ L+ + + L AL
Sbjct: 392 SPDVFTFTTLIDGYCGAKRIDDGMELLHEMPRRGLVANTVTYNTLI-HGFCLVGDLNAAL 450
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI--------------G 166
+ Q+ + SG P ++ + L+ C + + D L K++ G
Sbjct: 451 DLSQQMISSGVCP----DIVTCNTLLDGLCDNGKLKDALEMFKAMQKSKMDLDASHPFNG 506
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N L+ L + +EA ++ + M VPD +YS +I + + ++A
Sbjct: 507 VEPDVLTYNILICGLINEGKFLEAEELYEEMPHRGIVPDTITYSSMIDGLCKQSRLDEAT 566
Query: 227 EMMKEM 232
+M M
Sbjct: 567 QMFVSM 572
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 43/218 (19%), Positives = 81/218 (37%), Gaps = 3/218 (1%)
Query: 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S LP AL+ + + G P V LL +E R D +M P+
Sbjct: 126 SCSKLPFALSTFGKITKLGLHPDVVTFTTLLHGLCVEDRVSE--ALDFFHQMFETTCRPN 183
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T L++ LC ++VEA +L M P +Y ++ M T A+ +++
Sbjct: 184 VVTFTTLMNGLCREGRIVEAVALLDRMMEDGLQPTQITYGTIVDGMCKKGDTVSALNLLR 243
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
+M ++P + + +L + A + ++ KG Y ++ G
Sbjct: 244 KMEEVSHIIPNVVIYSAIIDSLCKDGRHSDAQNLFTEMQEKGIFPDLFTYNSMIVGFCSS 303
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ A + + M ER P + ++ G++
Sbjct: 304 GRWSDAEQLLQEMLERKISPDVVTYNALINAFVKEGKF 341
>gi|356497996|ref|XP_003517841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 600
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 72/171 (42%), Gaps = 1/171 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ +M G PD T N L+ LC D+ EAA +L M +PD+++++++ G
Sbjct: 244 NLFSQMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRKGIMPDVQTFNVIAGRF 303
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A + MV +MG+ + A +M A+E+ + + KGC
Sbjct: 304 FKTGMISRAKSIFSFMV-HMGIEHDVVTYTSIIGAHCMLNQMKDAMEVFDLMISKGCLPN 362
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G E + A + M G P + ++ G+ G+
Sbjct: 363 IVTYTSLIHGWCETKNMNKAMYFLGEMVNNGLDPNVVTWSTLIGGVCKAGK 413
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 53/280 (18%), Positives = 100/280 (35%), Gaps = 33/280 (11%)
Query: 62 QNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALA 121
+ + FSF+S+ R + +D M R +A D+ + + ++ P P
Sbjct: 36 HSSSTFSFVSD-SDTSRAQFLDSM-------RNAKSVDVALDFY--HKMVTMKPFPC--- 82
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
V LL S + + + ++ M IG P T N +++ L
Sbjct: 83 ------------VKDFNLLFS--IVAKMKHYTTAISLIKHMSYIGVKPTVHTLNIVINCL 128
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C + V VL M P + +++ ++ + A+ + + +MG
Sbjct: 129 CRLSHAVFGFSVLGLMFKIGVEPSIVTFNTIVNGLCVEGNVAQAIRFVDHLK-DMGYESD 187
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ L A+ ++ +E K C + Y VV+G + A
Sbjct: 188 SYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDGMVFEALNLFS 247
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWK-----LATVVRQ 336
MT +G P + ++ GL WK LA ++R+
Sbjct: 248 QMTGKGIQPDLFTYNCLIHGLCNFDRWKEAAPLLANMMRK 287
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 3/124 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+K +GY D TC + + LC + A LK M C D+ +YS V+ +
Sbjct: 178 HLKDMGYESDSYTCGAITNGLCKVGHSSAALSYLKKMEEKNCNLDVTAYSGVVDGLCKDG 237
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLERKGCPIGFQG 279
+A+ + +M G+ P + L N + WK A ++ + RKG Q
Sbjct: 238 MVFEALNLFSQMT-GKGIQPDLFTYNCLIHGL-CNFDRWKEAAPLLANMMRKGIMPDVQT 295
Query: 280 YEVV 283
+ V+
Sbjct: 296 FNVI 299
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 51/267 (19%), Positives = 102/267 (38%), Gaps = 49/267 (18%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L+ + A+ + + GC+P L W E + ++++ L EM + G P+
Sbjct: 341 LNQMKDAMEVFDLMISKGCLPNIVTYTSLIHGWCETKNMNKAMY-FLGEMVNNGLDPNVV 399
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA----------------- 215
T + L+ +C + V A ++ M +P+L++ +I++
Sbjct: 400 TWSTLIGGVCKAGKPVAAKELFLVMHKHGQLPNLQTCAIILDGLFKCNFHSEAMSLFREL 459
Query: 216 ------------------MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
M ++ K NDA+E+ + +G+ I V +
Sbjct: 460 EKMNWDLNIIIYNIILDGMCSSGKLNDALELFS-------YLSSKGVKIDVVTYNIMIKG 512
Query: 258 MWK------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
+ K A +++ +E GCP Y V V+G L + + K +M M ++GF
Sbjct: 513 LCKEGLLDDAEDLLMKMEENGCPPNECTYNVFVQGLLRRYQISKSTKYLMFMKDKGFQAD 572
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRF 338
+ ++ + E + V Q+F
Sbjct: 573 ATTTKFLINYFSANKENRALEVFLQKF 599
>gi|22128712|gb|AAM92824.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
Length = 878
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 5/166 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
IL+ R C+ ++ S E R +S+ + D+++ IG PD T N L+
Sbjct: 469 ILEMLDRGICLNTIFFNSIIDSHCKEGRVIESEKLFDLMVR---IGVKPDIITYNTLIDG 525
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C ++ EA K+L M S PD+ +Y +I + +DA+ + KEMV + G+ P
Sbjct: 526 CCLAGKMDEATKLLASMVSVGVKPDIVTYGTLINGYCRVSRMDDALALFKEMV-SSGVSP 584
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ L R A E+ + + G + Y +++ G
Sbjct: 585 NIITYNIILQGLFHTRRTAAAKELYVSITKSGTQLELSTYNIILHG 630
Score = 44.7 bits (104), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 42/178 (23%), Positives = 77/178 (43%), Gaps = 12/178 (6%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD----ILLEMKSIGYHPDC 171
L L A L ++ G ++ + + L+ C + +D +L M +G PD
Sbjct: 108 LDLGFAALGNVVKKGF----RVDAITFTPLLKGLCADKRTSDAMDIVLRRMTELGCIPDV 163
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSS---AECVPDLESYSIVIGAMSTARKTNDAVEM 228
+ N L+ LC ++ EA ++L M+ PD+ SY+ V+ ++ A
Sbjct: 164 FSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLNGFFKEGDSDKAYST 223
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
EM L+ G++P + AAL + M KA+E++ + + G Y ++ G
Sbjct: 224 YHEM-LDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKNGVMPDCMTYNSILHG 280
Score = 44.3 bits (103), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 46/207 (22%), Positives = 87/207 (42%), Gaps = 3/207 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQ-SVADILLEMKSIGYHPDCGTCNYLVS 179
+L+R GC+P V LL E R Q + ++ + + G PD + N +++
Sbjct: 150 VLRRMTELGCIPDVFSYNNLLKGLCDENRSQEALELLHMMADDRGGGSPPDVVSYNTVLN 209
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+A M +PD+ +YS +I A+ A+ + A+E++ MV N G+M
Sbjct: 210 GFFKEGDSDKAYSTYHEMLDRGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GVM 268
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
P + ++ + +A+ ++ + G Y ++ + A K
Sbjct: 269 PDCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYSSLMNYLCKNGRSTEARKI 328
Query: 300 VMGMTERGFIPYIKVRQKVVEGLAGVG 326
MT+RG P I + +++G A G
Sbjct: 329 FDSMTKRGLEPDIATYRTLLQGYATKG 355
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 88/216 (40%), Gaps = 8/216 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSIGYHPDCGTCN 175
A+ +L +++G +P + ++ L C Q + L +M+S G P+ T +
Sbjct: 255 AMEVLNTMVKNGVMP----DCMTYNSILHGYCSSGQPKEAIGTLKKMRSDGVEPNVVTYS 310
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + EA K+ M+ PD+ +Y ++ +T + ++ MV N
Sbjct: 311 SLMNYLCKNGRSTEARKIFDSMTKRGLEPDIATYRTLLQGYATKGALVEMHALLDLMVRN 370
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + + A ++ +A+ + + + G Y V++ +
Sbjct: 371 -GIQPDHHVFNILICAYAKQEKVDQAMLVFSKMRQHGLNPNVVCYGTVIDVLCKSGSVDD 429
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M + G P I V ++ GL +W A
Sbjct: 430 AMLYFEQMIDEGLTPNIIVYTSLIHGLCTCDKWDKA 465
>gi|356530056|ref|XP_003533600.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 694
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 81/181 (44%), Gaps = 1/181 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G P+ T + L+ C + ++ A ++ M E P + SY+I+I +
Sbjct: 363 NLLGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQTEVNPSVCSYNIMINGL 422
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++A+ +++EM L+ ++P + L + + A+++++ L +G P
Sbjct: 423 CKGKSVDEAMNLLREM-LHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPAD 481
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++G + + A M M ERG P +++GL K A + Q
Sbjct: 482 VITYTSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQ 541
Query: 337 R 337
Sbjct: 542 H 542
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 73/176 (41%), Gaps = 13/176 (7%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D EM S G PD T + L+ C QL+ A +L M+ PD+ +Y+I+I A+
Sbjct: 293 DFYTEMNSRGIFPDVITYSTLICGFCLAGQLMGAFSLLNEMTLKNINPDVYTYTILIDAL 352
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALRAN---REMWKAVEMIEFLER 270
K +A + +G+M ++G+ V+ + + E+ A ++ + +
Sbjct: 353 CKEGKLKEAKNL-------LGVMTKEGVKPNVVTYSTLMDGYCLVGEVHNAKQIFHAMVQ 405
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ G + + A + M + +P +++GL G
Sbjct: 406 TEVNPSVCSYNIMINGLCKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSG 461
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 72/166 (43%), Gaps = 8/166 (4%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ +SV ++L EM P+ T N L+ LC ++ A ++K + D+
Sbjct: 423 CKGKSVDEAMNLLREMLHKNVVPNTVTYNSLIDGLCKSGRITSALDLMKELHHRGQPADV 482
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ ++ + + + A+ + +M G+ P + + L + A ++ +
Sbjct: 483 ITYTSLLDGLCKNQNLDKAIALFMKMK-ERGIQPNKYTYTALIDGLCKGARLKNAQKLFQ 541
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGFIP 310
+ KGC I Y V++ G C+E +L M M + G IP
Sbjct: 542 HILVKGCCIDVYTYNVMIGGL--CKEGMLDEALAMKSKMEDNGCIP 585
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 64/133 (48%), Gaps = 4/133 (3%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ L+ C++Q++ + ++MK G P+ T L+ LC +L A K+ + +
Sbjct: 486 TSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALIDGLCKGARLKNAQKLFQHILV 545
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C D+ +Y+++IG + ++A+ M +M N G +P + +L E
Sbjct: 546 KGCCIDVYTYNVMIGGLCKEGMLDEALAMKSKMEDN-GCIPDAVTFEIIIRSLFEKDEND 604
Query: 260 KAVEMIEFLERKG 272
KA +++ + KG
Sbjct: 605 KAEKLLHEMIAKG 617
>gi|242069901|ref|XP_002450227.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
gi|241936070|gb|EES09215.1| hypothetical protein SORBIDRAFT_05g002210 [Sorghum bicolor]
Length = 894
Score = 54.3 bits (129), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 87/186 (46%), Gaps = 7/186 (3%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + +D+L+EM G+ PD T L+ L Q+ EA V + M+ + +PD
Sbjct: 464 RGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVVSGQVDEALMVREKMAERQVMPDANI 523
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+++I + R + A ++ EM L + P + + + + ++ A ++ EF+
Sbjct: 524 YNVLISGLCKKRMLSAAKNLLVEM-LEQKVQPDKFVYTTLIDGFIRSDKLSDARKIFEFM 582
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT---ERGFIPYIKVRQKVVEGLAGV 325
E KG Y +++G C+ ++ + VM M+ + G IP +++G A
Sbjct: 583 EEKGGYRDIVAYNAMIKG--YCKSGMM-NEAVMCMSSMRKVGCIPDEFTYTTLIDGYAKK 639
Query: 326 GEWKLA 331
G+ K A
Sbjct: 640 GDIKAA 645
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 76/196 (38%), Gaps = 36/196 (18%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL R+ + +L EMK G P+ N ++ +LC +A VL M ++ P
Sbjct: 355 WLGRKSDLTKIESLLWEMKERGLSPNVQIYNTVIYALCKCRSASQALAVLNQMVASRFDP 414
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D+ +++ +I A +A+++++E + L P Q
Sbjct: 415 DVVTFNTLIAAFCREGDVEEALKLLREAI-RRELEPNQ---------------------- 451
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
Y ++ G E ++A ++ M RG P + ++ GL
Sbjct: 452 -------------LSYTPLIHGFCVRGEVMVASDLLVEMIGRGHTPDVVTLGALIHGLVV 498
Query: 325 VGEWKLATVVRQRFAE 340
G+ A +VR++ AE
Sbjct: 499 SGQVDEALMVREKMAE 514
>gi|297746072|emb|CBI16128.3| unnamed protein product [Vitis vinifera]
Length = 563
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ + V + ++ MK G P+ + N L+ C+I L +A+ + M S+ P L
Sbjct: 315 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL 374
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+I+I S A+ + +M++EM GL P + + AL + + KA ++
Sbjct: 375 ATYNILIAGFSEAKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYS 433
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+E+ G Y V++ G
Sbjct: 434 SMEKAGLVADIYIYGVLIHG 453
Score = 38.5 bits (88), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G + T N L+ LC +++EA +++ M P+L SY+ +I +
Sbjct: 294 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 353
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A + +M + G P + A + +M+ +E +G Y
Sbjct: 354 NLDKASSLFNQMK-SSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 412
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++++ + A + M + G + I + ++ GL VG+ K A+ + + E
Sbjct: 413 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE 472
Query: 341 L 341
+
Sbjct: 473 M 473
>gi|357123295|ref|XP_003563347.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Brachypodium distachyon]
Length = 800
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/296 (22%), Positives = 122/296 (41%), Gaps = 11/296 (3%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + QI +L A P+ F+ + R ++DE + F L+ R +
Sbjct: 236 GRSWPQIVAMLEEMRAAGVEPDGFTASTVIAACGRDGLVDEAVAFFEDLKSRGHVPCVVT 295
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL ++ + + AL +L+ SGC P L+ ++ R + A L
Sbjct: 296 YNALLQVFGKAGNYME-ALRVLKEMEESGCKPDAVTYNELAGSY-ARAGFYEEAAKCLDT 353
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ ++ EA + M +P + +Y++++G + +
Sbjct: 354 MVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGKKSR 413
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGF--Q 278
N +EM+ EM + G P + + A+ R M V + LER K C +
Sbjct: 414 FNVMLEMLGEMSRS-GCTPNR-VTWNTMLAVCGKRGMEGYVTRV--LERMKSCGVELCRD 469
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ ++ C A K MT GF P + ++ L+ G+W A +
Sbjct: 470 TFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSI 525
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 96/250 (38%), Gaps = 26/250 (10%)
Query: 17 PCLLQFSSL--------RSMSSLRTLEETVRAAV--DAKDYQQIP---ELLGSFEEACQN 63
PC++ +++L M +LR L+E + DA Y ++ G +EEA +
Sbjct: 291 PCVVTYNALLQVFGKAGNYMEALRVLKEMEESGCKPDAVTYNELAGSYARAGFYEEAAKC 350
Query: 64 ----------PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIAYDYLLSYTLQS 112
PN F++ + +DE L F ++ P + L+ L
Sbjct: 351 LDTMVSKGILPNAFTYNTIMTAYGNAGKVDEALALFDWMKKNGFIPYVNTYNLILGMLGK 410
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
+ L +L RSGC P ++ A +R V +L MKS G
Sbjct: 411 KSRFNVMLEMLGEMSRSGCTP-NRVTWNTMLAVCGKRGMEGYVTRVLERMKSCGVELCRD 469
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+S+ A K+ M++A P L +Y+ ++ +S A ++ +M
Sbjct: 470 TFNTLISAYGRCGSRANAFKMYDEMTAAGFTPCLTTYNALLSVLSRQGDWTAAQSIINKM 529
Query: 233 VLNMGLMPRQ 242
N G P
Sbjct: 530 K-NEGFKPND 538
>gi|218191356|gb|EEC73783.1| hypothetical protein OsI_08468 [Oryza sativa Indica Group]
Length = 616
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 82/185 (44%), Gaps = 5/185 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + + EM G P T N L+ +C + +A V GM VP++ +Y+
Sbjct: 289 QLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAVTVFDGMLVKGYVPNVVTYT 348
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++I + A K + +++++ M N G P + L EM K +++ E + +
Sbjct: 349 VLIRGLCHAGKIDRGLKLLERMK-NGGCEPIVQTYNVLIRYLFEEGEMEKGLDLFEKMSK 407
Query: 271 -KGCPIGFQGYEVVVEGCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ C Y +++ + +LA + V M +RG++P + +V+ GL G
Sbjct: 408 GEECLPNQDTYNIIISAMFMRKRAEDMVLAARMVDEMVDRGYLPRRFMFNRVLNGLMLTG 467
Query: 327 EWKLA 331
+L+
Sbjct: 468 NQELS 472
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 56/270 (20%), Positives = 101/270 (37%), Gaps = 34/270 (12%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
R++ ++ S + L PR R L++T ++ L LA+ QR P +
Sbjct: 104 RLRRPRQLTNSILGLFPRHR--------LAFTPRTFPILFERLAVSQRR------PDLAV 149
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYH----------------PDCGTCNYLVSSL 181
RL LS R Q + + LL+ S H PD T N L
Sbjct: 150 RLFLSLHRSHRVAQDLPLFNSLLDALSKSRHAGKAASLVRALEQRFTPDVVTYNTLADGW 209
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA----VEMMKEMVLNMG 237
C + A VL+ M + P +Y+I++ A + A ++M K +
Sbjct: 210 CRVKDTSRALDVLRLMVESGIAPTKTTYNIILKGFFRAGQLRHAWDFFLQMKKRGSKDES 269
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + L ++ KA ++ + + ++GC Y +++ + A
Sbjct: 270 CKPDVVSYTTMVHGLGVAGQLEKARKVFDEMAKEGCAPSVATYNALIQVICKKGNVEDAV 329
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
GM +G++P + ++ GL G+
Sbjct: 330 TVFDGMLVKGYVPNVVTYTVLIRGLCHAGK 359
>gi|357155349|ref|XP_003577091.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g52620-like [Brachypodium distachyon]
Length = 877
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 66/132 (50%), Gaps = 1/132 (0%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+++L+EM G+ PD T L+ L Q+ EA V + M++ + +PD Y+++I
Sbjct: 453 ASNLLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMAARQLLPDANIYNVLIS 512
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A +++EM L + P + + + N + +A ++ EF+E+KG
Sbjct: 513 GLCKKKMLPAARNLIEEM-LEQNVHPDKYVYTTLIDGFIRNESLDEARKIFEFMEQKGIH 571
Query: 275 IGFQGYEVVVEG 286
GY +++G
Sbjct: 572 PDVVGYNAMIKG 583
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/221 (23%), Positives = 93/221 (42%), Gaps = 2/221 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
L +++ +GCVP +L + R + + +L EM++ G P T L+
Sbjct: 278 GLKLIEARWGAGCVPNAVFYNVLIDGYCRRGDVGRGIL-LLGEMEAKGLLPTVVTYGTLM 336
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S L L + A +L M P+++ Y+ VI A+ R + A+ ++K+M G
Sbjct: 337 SWLGRKGDLEKIASLLSEMRERRLPPNVQIYNSVIDALCKCRSASQALVVLKQMFAG-GC 395
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + L + +A ++ R Y ++ G E I+A
Sbjct: 396 DPDAITFSTLISGLCQEGRVQEAERLLRETTRWELNPNLSSYTSLIHGFCVRGEVIVASN 455
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ M ERG P + ++ GL G+ A +VR++ A
Sbjct: 456 LLVEMMERGHTPDVVTFGALIHGLVVAGQVSEALLVREKMA 496
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 52/119 (43%), Gaps = 3/119 (2%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTC 174
LP A +++ L P + L ++ R +S A + E M+ G HPD
Sbjct: 520 LPAARNLIEEMLEQNVHPDKYVYTTLIDGFI--RNESLDEARKIFEFMEQKGIHPDVVGY 577
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N ++ C + EA + + M +PD +Y+ +IG + + A+ ++ +M+
Sbjct: 578 NAMIKGYCQFGMMNEAVECMSTMRKVGRIPDEFTYTTLIGGYAKQGNISGALSLLCDMM 636
>gi|356510925|ref|XP_003524184.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/289 (22%), Positives = 114/289 (39%), Gaps = 21/289 (7%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
L+ L V A Q ++G + P+ F++ S ++E + F
Sbjct: 286 DLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSLIHIYCLQNKMNEAMRVF 345
Query: 90 IPLRPRSR-PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
+ R R P I L + + A+ +L+ + G VP L +
Sbjct: 346 HLMVSRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMGFVPDVATWTTLIGGF--- 402
Query: 149 RCQSQ---SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
CQ+ + ++ L M G P+ TC ++ LC + L EA + K M + +
Sbjct: 403 -CQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLN 461
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV------AAALRANREMW 259
+ YSI++ M +A K N A E+ +P +G+ I V L +
Sbjct: 462 IVIYSILLDGMCSAGKLNAAWELFSS-------LPGKGLQINVYIYTIMIKGLCKQGSLD 514
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
KA +++ +E GC Y V V+G L +E + K + M ++GF
Sbjct: 515 KAEDLLINMEENGCLPNNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGF 563
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/239 (20%), Positives = 103/239 (43%), Gaps = 11/239 (4%)
Query: 88 SFIPLRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
F+ L Y+ L+ Y LQ+ + A+ + + G +P + L W
Sbjct: 311 GFMILTGEGPDVFTYNSLIHIYCLQN--KMNEAMRVFHLMVSRGRLPDIVVFTSLIHGWC 368
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + ++++ +L EM +G+ PD T L+ C + + A ++ M VP+L
Sbjct: 369 KDKNINKAM-HLLEEMSKMGFVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNL 427
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM---VLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
++ ++++ + ++AV + K M L++ ++ ++ + +A + N A E
Sbjct: 428 QTCAVILDGLCKENLLSEAVSLAKAMEKSNLDLNIVIYSILLDGMCSAGKLN----AAWE 483
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ L KG I Y ++++G + A ++ M E G +P V+GL
Sbjct: 484 LFSSLPGKGLQINVYIYTIMIKGLCKQGSLDKAEDLLINMEENGCLPNNCTYNVFVQGL 542
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/170 (20%), Positives = 77/170 (45%), Gaps = 1/170 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ +L EM +G PD N LV + C ++++A V+ M PD+ +Y+ +
Sbjct: 269 KEAGSLLDEMMKMGMRPDLQMLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I K N+A+ + MV + G +P + + ++ + KA+ ++E + + G
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMV-SRGRLPDIVVFTSLIHGWCKDKNINKAMHLLEEMSKMG 387
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ G + + A + + M + G +P ++ +++GL
Sbjct: 388 FVPDVATWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL 437
>gi|413949109|gb|AFW81758.1| hypothetical protein ZEAMMB73_033635 [Zea mays]
Length = 691
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 80/177 (45%), Gaps = 4/177 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N L+ +LC EA +L+ M A C P++ +Y+ ++ A A +
Sbjct: 141 MLSDGVAPNVYTYNILIRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 200
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
D E + M+L+ GL P + + +M A ++ + + R+G Y
Sbjct: 201 V-DGAERLVGMMLDGGLKPNLVTFNSMVNGMCKAGKMEDARKVFDEMMREGLAPDGVSYN 259
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL--AGVGEWKLATVVRQ 336
+V G + A MT++G +P + ++ + AG EW + T+VRQ
Sbjct: 260 TLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLEWAV-TLVRQ 315
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 53/108 (49%), Gaps = 4/108 (3%)
Query: 136 QIRLLLSSAWLERRCQSQSVADILLE---MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q+ + +A ++ C+ + D LL M+ P N L++ C + ++ EA +
Sbjct: 322 QMNEVTFTALIDGFCKKGFLDDALLAVRGMRQCRIKPSVVCYNALINGYCMVGRMDEARE 381
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+L M + PD+ +YS +I A T+ A E+ ++M L G++P
Sbjct: 382 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQM-LEKGVLP 428
>gi|356523145|ref|XP_003530202.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Glycine max]
Length = 529
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 88/222 (39%), Gaps = 35/222 (15%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S + E+ G+ PD + L+S C + +LV+A +++ M P +Y ++
Sbjct: 238 ESAMRVFGEILDKGWMPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTYGVM 297
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A RK +AV ++++MV GL+P + KV L + +A E+ + RKG
Sbjct: 298 IEAYCKGRKPGEAVNLLEDMV-EKGLVPSSVLCCKVVDLLCEEGSVERACEVWRGVVRKG 356
Query: 273 CPIG----------------------------------FQGYEVVVEGCLECREYILAGK 298
+G Y ++ G E + AG+
Sbjct: 357 WRVGGAVVSTIVHWLCKEGKVVEARGVLDELEKGEVASLMTYNTLIAGMCERGQLCEAGR 416
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M E+G +P +++G VG+ K A V + E
Sbjct: 417 LWDEMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMVE 458
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/152 (25%), Positives = 71/152 (46%), Gaps = 1/152 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ +CN L+ +LC +++ A +VL MS VP++ SYS V+G A+ +
Sbjct: 184 PNVVSCNILLKALCKRNEVDVAVRVLDEMSLMGLVPNVVSYSTVLGGFVFKGDMESAMRV 243
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
E +L+ G MP + + ++ A+ M++ +E Y V++E
Sbjct: 244 FGE-ILDKGWMPDVTSYTVLMSGFCRLGKLVDAIRMMDLMEENRVQPSEVTYGVMIEAYC 302
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
+ R+ A + M E+G +P + KVV+
Sbjct: 303 KGRKPGEAVNLLEDMVEKGLVPSSVLCCKVVD 334
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 21/89 (23%), Positives = 46/89 (51%), Gaps = 3/89 (3%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C++ + D EM G P+ T N L+ C + + EA +VL+ M + C+P+ ++
Sbjct: 412 CEAGRLWD---EMVEKGRVPNAFTYNVLMKGFCKVGDVKEAIRVLEEMVESGCLPNKSTF 468
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SI++ +S + + ++ + + + G+
Sbjct: 469 SILVDGISLSGGKKEEIDKVVLLAMTTGV 497
>gi|32488707|emb|CAE03450.1| OSJNBa0088H09.8 [Oryza sativa Japonica Group]
Length = 905
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L RSGCVP L L R+ + Q +L +M G P+ T ++
Sbjct: 567 ALDTLDLMRRSGCVPTVMTYNALIHG-LVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIM 625
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A + +A + + + D+ Y ++ A + + A+ + +EM
Sbjct: 626 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQK-- 683
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++ G P Y + C + + A
Sbjct: 684 IPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAE 743
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGV 325
K + M + G P +K +++G A V
Sbjct: 744 KVIEEMVDVGLKPNVKTYTTLIKGWARV 771
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
LH A AI + LRSG P I LL A+ + +++ IL +M+ P
Sbjct: 491 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAIC-ILEKMQKERMQPSNR 549
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ + A L M + CVP + +Y+ +I + K AV ++ +M
Sbjct: 550 AFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKM 609
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ G+ P + + A+ ++ KA E ++ G + YE ++ C
Sbjct: 610 SI-AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 663
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR D++ +MK G P+ T +++ C + A KV++ M
Sbjct: 693 ILIDGWA-RRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 751
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
P++++Y+ +I + + A++ +EM L GL P +
Sbjct: 752 VGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKL-AGLKPDEA 794
>gi|255561941|ref|XP_002521979.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223538783|gb|EEF40383.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 496
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 80/168 (47%), Gaps = 5/168 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ C L+ +DQ+ +AA++LK M + VPD+ +Y++++G + K A+++
Sbjct: 131 PNFSCCTNLIRGFIKVDQINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDL 190
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+++M L+ G P + + N +AV + R+GCP Y +++E L
Sbjct: 191 LEDMSLS-GCPPDVVTYNTIIRCMFHNANFDQAVRFWKEQLRRGCPPYLITYTILIE--L 247
Query: 289 ECRE--YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
C+ + A + + M G P + +V G+++ A ++
Sbjct: 248 VCKHCGTVRAMEVLEDMAIEGCYPDLVTYNSLVNFTCKQGKYEDAALI 295
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 97/233 (41%), Gaps = 13/233 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+ +L+ GC P L+ ++ + C+ D I++ M S G P+ T N
Sbjct: 257 AMEVLEDMAIEGCYP----DLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYN 312
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ SLC+ E ++L M P + +Y+ +I + + N A++ +MV
Sbjct: 313 TLLHSLCSCGLWDEVDEILTVMKETSHPPTVVTYNTLINGLCKSGLVNRAIDFFHQMVYE 372
Query: 236 MGL------MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
L G + K + + + AVE++ + ++ I Y V++G
Sbjct: 373 NCLPDIVTYNTLLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCN 432
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
++ +A + + M P ++ ++ LA G + A +RQ+ +K
Sbjct: 433 NKKTDIAIQVLEIMISSRCKPDEEIYSALINSLADAGMMEEANELRQKLINIK 485
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/178 (25%), Positives = 72/178 (40%), Gaps = 1/178 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q A IL M G PD T N +V LC +L A +L+ MS + C PD+ +Y+
Sbjct: 148 QINKAARILKIMVMSGGVPDVITYNMMVGGLCKRGKLKSAIDLLEDMSLSGCPPDVVTYN 207
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I M + AV KE L G P + + + +A+E++E +
Sbjct: 208 TIIRCMFHNANFDQAVRFWKEQ-LRRGCPPYLITYTILIELVCKHCGTVRAMEVLEDMAI 266
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+GC Y +V + +Y A ++ M G P ++ L G W
Sbjct: 267 EGCYPDLVTYNSLVNFTCKQGKYEDAALIIINMLSHGMEPNAITYNTLLHSLCSCGLW 324
Score = 40.8 bits (94), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 38/171 (22%), Positives = 79/171 (46%), Gaps = 10/171 (5%)
Query: 83 DEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRL 139
DE+ E ++ S P + Y+ L++ +S + A+ + + C+P +
Sbjct: 325 DEVDEILTVMKETSHPPTVVTYNTLINGLCKS-GLVNRAIDFFHQMVYENCLPDIVTYNT 383
Query: 140 LLSS-----AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
LL + W+ Q + +IL EM + + ++ LC + A +VL
Sbjct: 384 LLGALCKEECWMSPSSQFEDAVEILREMGKRDHRINSYAYRSVIDGLCNNKKTDIAIQVL 443
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+ M S+ C PD E YS +I +++ A +A E+ ++++ N+ ++ Q ++
Sbjct: 444 EIMISSRCKPDEEIYSALINSLADAGMMEEANELRQKLI-NIKVLKDQSIL 493
>gi|6633829|gb|AAF19688.1|AC009519_22 F1N19.15 [Arabidopsis thaliana]
Length = 1048
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM+ G D T N L++ LC + +AA++L+ M PD+ +++ +I
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++A E+ KEM+ + + P + L + ++ A + + + KGC
Sbjct: 257 VKQGNLDEAQELYKEMIQS-SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + R K M+ GF I ++ G VG+ ++A
Sbjct: 316 VVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVA 370
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/179 (23%), Positives = 76/179 (42%), Gaps = 1/179 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD T N L++ C ++ + K+ M+ V D +Y+ +I A K
Sbjct: 840 MVSKGCFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 899
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
N A ++ MV + G+ P + L N ++ KA+ M+E L++ + Y
Sbjct: 900 LNVAQKVFNRMV-DCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN 958
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++++G + A +T +G P ++ GL G + A + +R E
Sbjct: 959 IIIQGLCRTDKLKEAWCLFRSLTRKGVKPDAIAYITMISGLCRKGLQREADKLCRRMKE 1017
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 12/212 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD----ILLEMKSIGYHPDC 171
L AL++L + ++ G P ++ + L C + D ++L +KS GY P+
Sbjct: 122 LSFALSVLGKMMKLGYEP----SIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNV 176
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
N L+ LC +L A ++L M D+ +Y+ ++ + + + +DA M+++
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLEC 290
M + + P + + +A E+ + + + Y ++ G C+
Sbjct: 237 M-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R Y A KT M +G P + ++ G
Sbjct: 296 RLYD-AKKTFDLMASKGCFPNVVTYNTLISGF 326
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 80/189 (42%), Gaps = 18/189 (9%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P ++ + + C+S+ V D + EM G D T N L+ C +
Sbjct: 844 GCFP----DVVTYNTLITGFCKSKRVEDGMKLFCEMTYQGLVGDAFTYNTLIHGYCQAGK 899
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV---LNMGLMPRQG 243
L A KV M PD+ +Y+I++ + K A+ M++++ +++ ++
Sbjct: 900 LNVAQKVFNRMVDCGVSPDIVTYNILLDCLCNNGKIEKALVMVEDLQKSEMDVDIITYN- 958
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVM 301
++I+ +E W + L RKG Y ++ G CR+ + A K
Sbjct: 959 IIIQGLCRTDKLKEAWC---LFRSLTRKGVKPDAIAYITMISGL--CRKGLQREADKLCR 1013
Query: 302 GMTERGFIP 310
M E GF+P
Sbjct: 1014 RMKEDGFMP 1022
Score = 37.7 bits (86), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 34/69 (49%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M +G+ P T L++ C ++ EA ++ M VP++ Y+ VI + R
Sbjct: 664 KMMKLGFRPSIVTLGSLLNGFCQGNRFQEAVSLVDSMDGFGFVPNVVIYNTVINGLCKNR 723
Query: 221 KTNDAVEMM 229
N+A+E+
Sbjct: 724 DLNNALEVF 732
>gi|297739643|emb|CBI29825.3| unnamed protein product [Vitis vinifera]
Length = 722
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + Y+P+ T L++ LC + +A K+ M+ P+ Y+I++ + A+
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+T+D ++ M ++ G P + ++ +A +++ E++G +G +GY
Sbjct: 251 RTDDVHRLLNTMKVS-GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGY 309
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+++G + Y + M + G P + + ++ G VG
Sbjct: 310 SSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 43/211 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCN 175
AL + + G P I ++ S CQ++ D+ L MK G PD TCN
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGL----CQAKRTDDVHRLLNTMKVSGCCPDSITCN 275
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + Q+ EA +L+ V ++ YS +I + A++ ++ E ++M
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM-FK 334
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P V + L R C +G Y
Sbjct: 335 AGIEP--------------------DVVLYTILIRGFCEVGMVDY--------------- 359
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + MT+RG P +++G VG
Sbjct: 360 ALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390
>gi|242073534|ref|XP_002446703.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
gi|241937886|gb|EES11031.1| hypothetical protein SORBIDRAFT_06g020845 [Sorghum bicolor]
Length = 802
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 62/286 (21%), Positives = 117/286 (40%), Gaps = 19/286 (6%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPR--SRPKIAYDYLLSYTLQSLHPLPLAL 120
NP+ +++ + +I++ F +R S + Y LL L++ LP A
Sbjct: 320 NPDVYTYTILIDSFCKAGLIEQARSWFDEMRSIGCSANVVTYTALLHAYLKA-KQLPQAS 378
Query: 121 AILQRTLRSGCVP-----VPQIRLLLSSAWLERRCQ--------SQSV-ADILLEMKSI- 165
I R + +GC P + L + +++ C+ S +V +D E K
Sbjct: 379 DIFNRMIDAGCPPNTITYSALVDGLCKAGEIQKACEVYTKLIGTSDNVGSDFYFEGKHTD 438
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
P+ T L+ LC ++V+A ++L M S C P+ Y +I K ++A
Sbjct: 439 SIAPNVVTYGALIDGLCKAHKVVDAQELLDAMLSNGCEPNHIIYDALIDGFCKVGKIDNA 498
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E+ M G +P + A+ +R + A++++ + C Y +++
Sbjct: 499 QEVFLRMS-KCGYLPTVHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMID 557
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G E A K + M E+G P + +++GL G+ L+
Sbjct: 558 GLCRIGECQKALKLLSMMEEKGCSPNVVTYTALIDGLGKSGKVDLS 603
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 61/280 (21%), Positives = 108/280 (38%), Gaps = 30/280 (10%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
KV +EML S L + A L + +A I++ + G VP
Sbjct: 239 KVYEEMLASSCVLNKVNTANFAR------CLCGMGKFDMAFQIIKVMMGKGFVPDTSTY- 291
Query: 140 LLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
S + C++ V L EMKS+G +PD T L+ S C + +A
Sbjct: 292 ---SKVITFLCEAMKVEKAFLLFQEMKSVGVNPDVYTYTILIDSFCKAGLIEQARSWFDE 348
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C ++ +Y+ ++ A A++ A ++ M+ + G P + L
Sbjct: 349 MRSIGCSANVVTYTALLHAYLKAKQLPQASDIFNRMI-DAGCPPNTITYSALVDGLCKAG 407
Query: 257 EMWKAVE----MIEFLERKGCPIGFQG------------YEVVVEGCLECREYILAGKTV 300
E+ KA E +I + G F+G Y +++G + + + A + +
Sbjct: 408 EIQKACEVYTKLIGTSDNVGSDFYFEGKHTDSIAPNVVTYGALIDGLCKAHKVVDAQELL 467
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M G P + +++G VG+ A V R ++
Sbjct: 468 DAMLSNGCEPNHIIYDALIDGFCKVGKIDNAQEVFLRMSK 507
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/213 (20%), Positives = 90/213 (42%), Gaps = 8/213 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPD 170
H + A +L L +GC P ++ A ++ C+ + + + L M GY P
Sbjct: 458 HKVVDAQELLDAMLSNGCEP----NHIIYDALIDGFCKVGKIDNAQEVFLRMSKCGYLPT 513
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T L+ ++ +L A KVL M + C P++ +Y+ +I + + A++++
Sbjct: 514 VHTYTSLIDAMFKDRRLDLAMKVLSQMVESSCTPNVVTYTAMIDGLCRIGECQKALKLL- 572
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + L + ++ ++++ + KGC + Y V++ C
Sbjct: 573 SMMEEKGCSPNVVTYTALIDGLGKSGKVDLSLQLFIQMSTKGCAPNYVTYRVLINHCCAA 632
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A + M + + Y++ VV+G +
Sbjct: 633 GLLDEAHSLLSEMKQTYWPKYLQGYCSVVQGFS 665
>gi|449462483|ref|XP_004148970.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 917
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 87/207 (42%), Gaps = 14/207 (6%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
LS W + +C + EM +G PD T + L+ LC +++EA K+L+ +
Sbjct: 505 LSGKWEKAKC-------LFNEMLDVGIQPDVTTSSVLIDMLCKKGKVIEANKLLEVVIQR 557
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C+ D+ + + ++ + + + A ++ +M +G MP + L + +
Sbjct: 558 GCILDVVTCTTLVKGLCMKHRISKATQLFLKMQ-KLGCMPNVVTCATLMKGLCQSGNIKI 616
Query: 261 AVEMIEFLERKGCPIGFQ------GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
A+E+ + + P G Y ++++G +C A + M G IP +
Sbjct: 617 ALELHKNMLSDTSPYGINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVIS 676
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ G G+WK A + ++
Sbjct: 677 YTSLIHGFCRSGKWKDAKYLFNEMVDI 703
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 103/235 (43%), Gaps = 16/235 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK---------- 163
H + A + + + GC+P ++ + ++ CQS ++ I LE+
Sbjct: 577 HRISKATQLFLKMQKLGCMP----NVVTCATLMKGLCQSGNIK-IALELHKNMLSDTSPY 631
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
I P+ + + ++ LC + EA ++ K M + +PD+ SY+ +I + K
Sbjct: 632 GINCKPNAISYSIIIDGLCKCGREDEARELFKEMKALGVIPDVISYTSLIHGFCRSGKWK 691
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
DA + EMV ++G+ P + L ++ +A E++E + ++GC Y +
Sbjct: 692 DAKYLFNEMV-DIGVQPDVTTFSVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTL 750
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
V+G A + M M + G +P + +++GL G K A + ++
Sbjct: 751 VKGLCMNDRISEATQLFMKMQKLGCLPDVVTYGTLMKGLCQTGNIKTALELHKKM 805
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 66/333 (19%), Positives = 131/333 (39%), Gaps = 67/333 (20%)
Query: 64 PNPFSF--LSNFPQNHRIKVIDEMLESFIPLRPRS----------RPKIAYDYLLSYTLQ 111
P+ F+F L N N +K ++E L + + R RP + +L L
Sbjct: 8 PDSFTFNILINCLCN--VKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSSMLIDILC 65
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYH 168
+ A +L+ ++ GC+ + ++ S ++ C +++ + + M+ +G
Sbjct: 66 KEGKVIEANELLEVMIQRGCI----LDIVTYSTLIKGLCMEHRISEATWLFMSMQKLGCR 121
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLK------GMSSAECVPDLESYSIVIGAMSTARKT 222
PD T L+ LC + A ++ + G +C P L SYSI+I + R+
Sbjct: 122 PDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSIIIDGLCKDRRE 181
Query: 223 NDAVEMMKEM----------------------------------VLNMGLMP---RQGMV 245
++A E+ KEM +L++G+ P G++
Sbjct: 182 DEARELFKEMKAQGMMPDVISYTSLIHGFCHSGKWEKAKCLFNEMLDVGIQPDVTTSGVL 241
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
I + ++ +A E++E + +GC + Y +++G A + M M +
Sbjct: 242 IDMFC---KEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMKK 298
Query: 306 RGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
G P +++GL G+ +A + Q
Sbjct: 299 LGCRPDAIAYGTLMKGLCQTGKINIALHLHQEM 331
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 41/196 (20%), Positives = 84/196 (42%), Gaps = 16/196 (8%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EMK++G PD + L+ C + +A + M PD+ ++S++I +
Sbjct: 660 ELFKEMKALGVIPDVISYTSLIHGFCRSGKWKDAKYLFNEMVDIGVQPDVTTFSVLIDML 719
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A E++ E+++ G +P + L N + +A ++ +++ GC
Sbjct: 720 CKEGKVIEANELL-EVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQKLGCLPD 778
Query: 277 FQGYEVVVEG---------CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y +++G LE + +L+ G F P + +++GL G
Sbjct: 779 VVTYGTLMKGLCQTGNIKTALELHKKMLSDT---GQYGTNFKPDVISYSIIIDGLCKHGR 835
Query: 328 WKLATVVRQRFAELKS 343
A R+ F E+K+
Sbjct: 836 EDEA---RELFKEMKA 848
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 47/208 (22%), Positives = 89/208 (42%), Gaps = 13/208 (6%)
Query: 142 SSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
S ++ C+ V A+ LLE M G D T + L+ LC ++ EA ++ M
Sbjct: 238 SGVLIDMFCKEGKVIEANELLEVMVHRGCILDIVTYSTLIKGLCMKHRISEATQLFMSMK 297
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG------LMPRQGMVIKVAAAL 252
C PD +Y ++ + K N A+ + +EM+ + + P + L
Sbjct: 298 KLGCRPDAIAYGTLMKGLCQTGKINIALHLHQEMLNDTSQYGIKCIRPDVTTSSMLIDIL 357
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT--VMGMTERGFIP 310
++ +A E++E + ++GC + Y +++G C E+ ++ T M M + G P
Sbjct: 358 CKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGL--CMEHRISEATWLFMSMQKLGCRP 415
Query: 311 YIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+++GL G +A + Q
Sbjct: 416 DAITYGTLMKGLCQTGNINIALQLHQEM 443
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 74/169 (43%), Gaps = 7/169 (4%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T + L+ LC +++EA ++L+ M C+ D+ +YS +I + + ++A +
Sbjct: 345 PDVTTSSMLIDILCKEGKVIEANELLEVMIQRGCILDIVTYSTLIKGLCMEHRISEATWL 404
Query: 229 MKEMVLNMGLMPRQ---GMVIK-VAAALRANREMWKAVEMIEFLERKG--CPIGFQGYEV 282
M +G P G ++K + N + EM+ R G C Y +
Sbjct: 405 FMSMQ-KLGCRPDAITYGTLMKGLCQTGNINIALQLHQEMLNDTGRYGIKCKPTLISYSI 463
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + R A + M +G +P + ++ G G+W+ A
Sbjct: 464 IIDGLCKDRREDEARELFEEMKAQGIMPDVISYTTLIHGFCLSGKWEKA 512
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 28/98 (28%), Positives = 48/98 (48%), Gaps = 3/98 (3%)
Query: 143 SAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ V A+ LLE M G P+ T LV LC D++ EA ++ M
Sbjct: 713 SVLIDMLCKEGKVIEANELLEVMIQRGCIPNTVTYTTLVKGLCMNDRISEATQLFMKMQK 772
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
C+PD+ +Y ++ + A+E+ K+M+ + G
Sbjct: 773 LGCLPDVVTYGTLMKGLCQTGNIKTALELHKKMLSDTG 810
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 79/179 (44%), Gaps = 31/179 (17%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G PD T N L++ LC + ++ E + G+ +PD+ +YSI +++
Sbjct: 1 MRLAGLFPDSFTFNILINCLCNVKRVNEGLAAMAGIMRRGYIPDIVTYSIRPDVTTSS-- 58
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
M+++ ++ ++G VI +A E++E + ++GC + Y
Sbjct: 59 ----------MLID--ILCKEGKVI-------------EANELLEVMIQRGCILDIVTYS 93
Query: 282 VVVEGCLECREYILAGKT--VMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+++G C E+ ++ T M M + G P +++GL G +A + Q
Sbjct: 94 TLIKGL--CMEHRISEATWLFMSMQKLGCRPDAITYGTLMKGLCQTGNINIALQLHQEM 150
>gi|255570715|ref|XP_002526312.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534393|gb|EEF36101.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 729
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/173 (27%), Positives = 76/173 (43%), Gaps = 5/173 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G+ PD T N V+ LC + L EA ++L+ M VPD +Y+ + A
Sbjct: 507 EMLTKGFPPDVITYNVFVNGLCKLGNLEEAGELLQKMIRDGHVPDHVTYTSFMHAHMENG 566
Query: 221 KTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
+ E+ +M L+ G P V+ A AL R W +E ++ KG
Sbjct: 567 HLREGREIFYDM-LSRGQTPTVVTYTVLIHAHALNG-RLDWAMAYFLE-MQEKGVVPNVI 623
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V++ G + R+ A K + M E+G P ++ +G+W+ A
Sbjct: 624 TYNVLINGFCKVRKMDQACKFFIEMQEKGIFPNKYTYTILINENCNMGKWQEA 676
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 61/139 (43%), Gaps = 3/139 (2%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ LC + L A K+ + M + PD+ +Y++++ A E EM
Sbjct: 414 TYNTLIDGLCRLGDLETALKLKEDMINRGIHPDVVTYTVLVNGACKLGNMLMAKEFFDEM 473
Query: 233 VLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
L++GL P Q ++ L+ + KA ++ E + KG P Y V V G +
Sbjct: 474 -LHVGLAPDQFAYTARIVGELKLG-DTAKAFKLQEEMLTKGFPPDVITYNVFVNGLCKLG 531
Query: 292 EYILAGKTVMGMTERGFIP 310
AG+ + M G +P
Sbjct: 532 NLEEAGELLQKMIRDGHVP 550
Score = 38.1 bits (87), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 45/223 (20%), Positives = 87/223 (39%), Gaps = 5/223 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL ++ + GC P ++ + L ++ + Q ++ EM G T N L+
Sbjct: 256 ALDLVPKMQERGCYP-SEVTFNVLINGLSKKGELQQAKGLIQEMAKAGLRVSPYTYNPLI 314
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C LVEA + + M + P + S++ ++ K +DA + + +M L L
Sbjct: 315 CGYCKKGLLVEALALWEEMVTRGVSPTVASHNTIMYGFCKEGKMSDARQQLSDM-LKKNL 373
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + + +A +++ L + Y +++G + A K
Sbjct: 374 MPDIISYNTLIYGFCRLGNIGEAFILLDELRFRNLSFNIVTYNTLIDGLCRLGDLETALK 433
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
M RG P + +V G +G +A ++ F E+
Sbjct: 434 LKEDMINRGIHPDVVTYTVLVNGACKLGNMLMA---KEFFDEM 473
>gi|302788594|ref|XP_002976066.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
gi|300156342|gb|EFJ22971.1| hypothetical protein SELMODRAFT_53130 [Selaginella moellendorffii]
Length = 440
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 105/263 (39%), Gaps = 38/263 (14%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERR--------- 149
I Y L+S + L + AL + L+ G P VP +L+ E R
Sbjct: 148 ITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFS 207
Query: 150 ---------------------CQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAID 185
C++ V D LL +K + G PD + N +++ LC
Sbjct: 208 GLVKHGLEPDAITYTVFIDGLCKAGRVEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEK 267
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQ 242
++ EA +L GM + C P+ S++ +I A K A+ KEM L G+ P
Sbjct: 268 RVDEAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEM-LKRGVKPTVVTY 326
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+++ R + +A+ + + + KG Y +++G + + A + +
Sbjct: 327 NILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSALIDGLGKAGKLDDARRLLGA 386
Query: 303 MTERGFIPYIKVRQKVVEGLAGV 325
M +G IP + ++ GL G+
Sbjct: 387 MEAKGCIPNVYTYNSLISGLCGL 409
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 80/184 (43%), Gaps = 8/184 (4%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A L C ++D + M GY PD T N L+ C + +L EA K+ G
Sbjct: 14 NALLSGLCNGGRMSDAQALYERMIKAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVK 73
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
VPD+ +Y+ +I A K ++A +++ MV + L+P + L N +
Sbjct: 74 RGFVPDVVTYNALINGFCKADKLDEAQRILQRMV-SENLVPDVVTYNSLVNGLCKNGRVD 132
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A +I KG Y ++ G C E R A K + ++G+ P + +
Sbjct: 133 EARMLI---VDKGFSPNVITYSTLISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNIL 189
Query: 319 VEGL 322
++GL
Sbjct: 190 IDGL 193
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 59/277 (21%), Positives = 122/277 (44%), Gaps = 11/277 (3%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPL 116
+A +P+ ++ + ++ +DE L+ F R + Y+ L++ ++ L
Sbjct: 38 KAGYSPDVVTYNTLLHGFCKVGELDEALKIFDGAVKRGFVPDVVTYNALINGFCKA-DKL 96
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
A ILQR + VP ++ ++ + C++ V + + + G+ P+ T +
Sbjct: 97 DEAQRILQRMVSENLVP----DVVTYNSLVNGLCKNGRVDEARMLIVDKGFSPNVITYST 152
Query: 177 LVSSLC-AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S LC + + EA K+ + P++ +Y+I+I + + N+A E+ +V
Sbjct: 153 LISGLCRELRGVSEALKLFGSVLKQGYEPEVPTYNILIDGLLKEDRVNEAFELFSGLV-K 211
Query: 236 MGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
GL P + + +A R + A+ M++ ++ KGC + V+ G + +
Sbjct: 212 HGLEPDAITYTVFIDGLCKAGR-VEDALLMLKDMDEKGCVPDVVSHNAVINGLCKEKRVD 270
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + GM +G P ++ G G+WK A
Sbjct: 271 EAEVLLSGMEAKGCSPNAISFNTLICGQCRAGKWKKA 307
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 76/170 (44%), Gaps = 11/170 (6%)
Query: 53 LLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTL 110
LL E +PN SF + R + + +F + R +P + Y+ L+
Sbjct: 275 LLSGMEAKGCSPNAISFNTLICGQCRAGKWKKAMTTFKEMLKRGVKPTVVTYNILVDGLC 334
Query: 111 QSLHP--LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSI 165
++ + A+ + + G VP ++ SA ++ ++ + D +L M++
Sbjct: 335 KARQEGRIKEAITLFDAMIEKGRVP----DVVTYSALIDGLGKAGKLDDARRLLGAMEAK 390
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
G P+ T N L+S LC ++++ EA ++ M CVPD +Y +I A
Sbjct: 391 GCIPNVYTYNSLISGLCGLEKVDEALELFVAMVEKGCVPDTITYGTIISA 440
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 53/117 (45%), Gaps = 2/117 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL--EMKSIGYHPDCGTCNY 176
A+ + L+ G P +L + R + + I L M G PD T +
Sbjct: 307 AMTTFKEMLKRGVKPTVVTYNILVDGLCKARQEGRIKEAITLFDAMIEKGRVPDVVTYSA 366
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L+ L +L +A ++L M + C+P++ +Y+ +I + K ++A+E+ MV
Sbjct: 367 LIDGLGKAGKLDDARRLLGAMEAKGCIPNVYTYNSLISGLCGLEKVDEALELFVAMV 423
>gi|147784915|emb|CAN72973.1| hypothetical protein VITISV_019486 [Vitis vinifera]
Length = 550
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 67/140 (47%), Gaps = 4/140 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ + V + ++ MK G P+ + N L+ C+I L +A+ + M S+ P L
Sbjct: 302 CQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIGNLDKASSLFNQMKSSGQSPSL 361
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+I+I S A+ + +M++EM GL P + + AL + + KA ++
Sbjct: 362 ATYNILIAGFSEAKNSAGVTDMVREMEAR-GLSPSKVTYTILMDALVRSDNIEKAFQIYS 420
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+E+ G Y V++ G
Sbjct: 421 SMEKAGLVADIYIYGVLIHG 440
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 36/181 (19%), Positives = 75/181 (41%), Gaps = 1/181 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G + T N L+ LC +++EA +++ M P+L SY+ +I +
Sbjct: 281 EMRERGVACNVVTYNTLIGGLCQERRVLEAERLMCRMKRDGLSPNLISYNTLIDGYCSIG 340
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A + +M + G P + A + +M+ +E +G Y
Sbjct: 341 NLDKASSLFNQMK-SSGQSPSLATYNILIAGFSEAKNSAGVTDMVREMEARGLSPSKVTY 399
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++++ + A + M + G + I + ++ GL VG+ K A+ + + E
Sbjct: 400 TILMDALVRSDNIEKAFQIYSSMEKAGLVADIYIYGVLIHGLCVVGDMKEASKLFKSLDE 459
Query: 341 L 341
+
Sbjct: 460 M 460
>gi|359489321|ref|XP_002269223.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 889
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S ++ ++M G PD T N L++ C +V A ++ M ++ PDL +Y+I
Sbjct: 668 RSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLTTYNIR 727
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMP 240
I ++R+ N AV M+ E+V + G++P
Sbjct: 728 IHGFCSSRRMNRAVLMLDELV-SAGIVP 754
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 3/170 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G PD + VS LC +L EA + L M P + +++ VI A S
Sbjct: 428 LLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYS 487
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + A E K MV + GL P + L N + +A E+I + KG +
Sbjct: 488 QAGLEDKAFEAYKLMV-HFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNN 546
Query: 278 QGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVG 326
+ V+++ + R ++ +++ G M RG P + ++GL+ G
Sbjct: 547 MAFTVLLDKFFK-RGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQG 595
>gi|357518651|ref|XP_003629614.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523636|gb|AET04090.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 592
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 13/158 (8%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ L M G P+ TC ++ LC L EA + M + ++ YSI++ M
Sbjct: 412 ELFLNMHKYGQVPNLQTCAIILDGLCKSQLLSEALSLFHAMEKSNLDLNIVIYSIILDGM 471
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRANREMWKAVEMIEFLER 270
+A K N A+E+ +P +G+ I V A + KA +++ +E
Sbjct: 472 CSAGKLNTALELFS-------CLPAKGLQINVYAYTIMINGFAKQGLLDKAEDLLSNMEE 524
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
GC Y V V+G + RE + K + M ++GF
Sbjct: 525 NGCMPDSCTYNVFVQGLVAEREIARSIKYLTMMRDKGF 562
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 81/192 (42%), Gaps = 4/192 (2%)
Query: 138 RLLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ S ++ C+ V++ L LEM G P+ T L+ LC + EA +L
Sbjct: 215 NVVVYSTVMDGLCKDGLVSEALGLCLEMSGKGIKPNLVTYTCLIQGLCNFGRWKEAGSLL 274
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M +PDL+S +I++ + K A ++ M+L +G +P +
Sbjct: 275 DEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMIL-VGEVPDVFTYNSLIDRYCL 333
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+M +A + E + +GC Y ++ G + + A + M + GF P +
Sbjct: 334 QNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMIKVGFTPDVVT 393
Query: 315 RQKVVEGLAGVG 326
++ G VG
Sbjct: 394 WTTLIGGFCQVG 405
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 64/124 (51%), Gaps = 6/124 (4%)
Query: 119 ALAILQRTLRSGCVPVPQ-IRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNY 176
A ++L ++ G +P Q + +L+ E + Q++SV ++ +G PD T N
Sbjct: 270 AGSLLDEMMKMGVMPDLQSLNILVDVLCKEGKIMQAKSVIGFMI---LVGEVPDVFTYNS 326
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ C +Q+ EA +V + M S C+PD+ +Y+ +I + N A+ ++ EM+ +
Sbjct: 327 LIDRYCLQNQMDEATRVFELMVSRGCLPDIVAYTSLIHGWCKIKNINKAMHLLDEMI-KV 385
Query: 237 GLMP 240
G P
Sbjct: 386 GFTP 389
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 110/271 (40%), Gaps = 47/271 (17%)
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRT 126
+F+ N ++ ++K IDE L F +T+ ++PLP +++ T
Sbjct: 41 LNFMRNQCKSGKLKSIDEALNFF------------------HTMAKMNPLP---SVIDFT 79
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS-IGYHPDCGTCNYLVSSLCAID 185
L G ++ + + ++ EM S +G PD N +++SLC +
Sbjct: 80 LLLG--------------FIVKMKHYTTAISLVKEMHSSLGIKPDTFILNVVINSLCHLK 125
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL---MPRQ 242
+ VL M P + +++I+I + AVE++ + V G +
Sbjct: 126 LVAFGFSVLGTMLKLGLEPSVVTFTILINGLCVKGDVGRAVELV-DHVEKTGYRSDVKTY 184
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTV 300
G++I + E AV + +E + Y V++G C++ ++ A
Sbjct: 185 GVLINGLCKMGKTSE---AVGWLRKMEERNWNPNVVVYSTVMDGL--CKDGLVSEALGLC 239
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M+ +G P + +++GL G WK A
Sbjct: 240 LEMSGKGIKPNLVTYTCLIQGLCNFGRWKEA 270
>gi|449455613|ref|XP_004145547.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Cucumis sativus]
Length = 572
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 78/189 (41%), Gaps = 2/189 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R Q I +M G PD N ++S+ I + + M S C PD
Sbjct: 327 LGRANQIDDAVKIFDKMDENGCTPDVDAYNAMISNFICIGDFDQCLTYYERMLSNRCEPD 386
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +YS +I A+K DA+EM EMV ++P G + + A+ +
Sbjct: 387 MNTYSNLITGFLKAKKVADALEMFDEMVAR--IIPTTGAITSFIQLSCSYGPPHAAMLIY 444
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y++++ ++ + M E G+ P ++ + ++ L
Sbjct: 445 KKARKVGCRISKNAYKLLLMRLSLFGKFGMLLNIWNEMQESGYDPDVETYEHAIDCLCKT 504
Query: 326 GEWKLATVV 334
G+ + A +V
Sbjct: 505 GQLENAVLV 513
>gi|225427482|ref|XP_002263209.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 592
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 89/191 (46%), Gaps = 7/191 (3%)
Query: 48 QQIPELLGSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR--PKIAY 102
Q+I + + FEE CQ PN ++ + + + + + F + + + Y
Sbjct: 368 QRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDAIALFHEMVASGQIPDLVTY 427
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
LL Y ++ H L A+A+L+ S P Q ++ + R + ++ D+ +
Sbjct: 428 RILLDYLCKTRH-LDQAMAMLKAIEGSNLAPDIQSYNIVIDG-MCRVGELEAAGDLFSSL 485
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
S G HPD T +++ LC L EA K+ + M++ C PD +Y+++ +T
Sbjct: 486 SSKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTYNLITRGFLRNNET 545
Query: 223 NDAVEMMKEMV 233
A+++++EM+
Sbjct: 546 LSAIQLLQEML 556
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 72/157 (45%), Gaps = 1/157 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ + + L++ C I ++ +A + + M E VP++ +Y+ +I + + DA
Sbjct: 349 GCAPNVISYSTLINGYCKIQRIDKAMYLFEEMCQRELVPNIVTYNTLIHGLCHVGRLRDA 408
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV + G +P + L R + +A+ M++ +E Q Y +V++
Sbjct: 409 IALFHEMVAS-GQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVID 467
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
G E AG ++ +G P + ++ GL
Sbjct: 468 GMCRVGELEAAGDLFSSLSSKGLHPDVWTYTIMINGL 504
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 74/181 (40%), Gaps = 4/181 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G PD T L+ LC L +A +LK + + PD++SY+IVI M
Sbjct: 414 EMVASGQIPDLVTYRILLDYLCKTRHLDQAMAMLKAIEGSNLAPDIQSYNIVIDGMCRVG 473
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A ++ + + GL P + L + +A ++ + GC Y
Sbjct: 474 ELEAAGDLFSSLS-SKGLHPDVWTYTIMINGLCLQGLLAEATKLFREMNTDGCSPDDCTY 532
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ G L E + A + + M RGF +VE L+ G L V+Q E
Sbjct: 533 NLITRGFLRNNETLSAIQLLQEMLGRGFSADASTITLIVEMLSDDG---LDQSVKQILHE 589
Query: 341 L 341
Sbjct: 590 F 590
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 8/180 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S+G D T +++S C ++++ VL + PD +++ +I +
Sbjct: 99 QMDSLGIPSDVYTLAIVINSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEG 158
Query: 221 KTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K +A+ + +MV G P G +I + +R A+ ++ + +K C
Sbjct: 159 KIGEALHLFDKMV-GEGFQPNGVTYGTLIHGLCKVGNSR---AAIRLLRSMVQKNCEPNV 214
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK-LATVVRQ 336
Y +++ + R+ A M +G P + ++ GL EWK +AT++ +
Sbjct: 215 ITYNTIIDCLFKDRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNE 274
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/160 (24%), Positives = 71/160 (44%), Gaps = 9/160 (5%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ P+ T L+ LC + A ++L+ M C P++ +Y+ +I + R+ N+A
Sbjct: 174 GFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMVQKNCEPNVITYNTIIDCLFKDRQVNEA 233
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE--MIEFLERKGCPIGFQGYEVV 283
+ + EM+ G+ P + L E WK V M E ++ K P + +
Sbjct: 234 LNIFSEMIAK-GISPNVSTYNSIIHGLCKFSE-WKHVATLMNEMVDSKIMP-NVVIFTTL 290
Query: 284 VEGCLECRE--YILAGKTVMGMTERGFIPYIKVRQKVVEG 321
V+ C+E +A V M +RG P + +++G
Sbjct: 291 VDAL--CKEGMVTIAHDVVDVMIQRGVEPDVVTYTALMDG 328
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/257 (18%), Positives = 97/257 (37%), Gaps = 7/257 (2%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
IDE L SF + P D+ + L S+ + +L + + + +P
Sbjct: 51 NFNTIDEALSSFNRMLHMQPPPSVVDF--AKILTSIANMKHYSTVLSLSKQMDSLGIPSD 108
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
L+ + C V +L ++ +G+ PD T L+ LC ++ EA +
Sbjct: 109 VYTLAIV-INSFCHLNRVDFGFSVLAKIFKLGHQPDTATFTTLIRGLCVEGKIGEALHLF 167
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M P+ +Y +I + + A+ +++ MV P + L
Sbjct: 168 DKMVGEGFQPNGVTYGTLIHGLCKVGNSRAAIRLLRSMV-QKNCEPNVITYNTIIDCLFK 226
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+R++ +A+ + + KG Y ++ G + E+ + M + +P + +
Sbjct: 227 DRQVNEALNIFSEMIAKGISPNVSTYNSIIHGLCKFSEWKHVATLMNEMVDSKIMPNVVI 286
Query: 315 RQKVVEGLAGVGEWKLA 331
+V+ L G +A
Sbjct: 287 FTTLVDALCKEGMVTIA 303
>gi|449515696|ref|XP_004164884.1| PREDICTED: pentatricopeptide repeat-containing protein At3g54980,
mitochondrial-like [Cucumis sativus]
Length = 657
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 76/176 (43%), Gaps = 1/176 (0%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+++ EM +G P T L+ C + + A K+L M D+++Y +I
Sbjct: 409 SNVYREMCEVGITPSTVTYTSLIDGFCKGNNIDLALKLLNDMKRKGLKMDIKAYGTLIDG 468
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
R A E++ E+ GL P + + + + + +A+++ + + +G P
Sbjct: 469 FCKRRDMKSAHELLNEL-RGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPC 527
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y +++G L+ + A M +G +P + ++ GL G+++ A
Sbjct: 528 DLKTYTSLIDGLLKSGRLLYASDIHTEMLSKGILPDDRAHTVLINGLCNKGQFENA 583
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 77/198 (38%), Gaps = 36/198 (18%)
Query: 45 KDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104
+D + ELL A +PN F + S + ++E ++ + + P
Sbjct: 473 RDMKSAHELLNELRGAGLSPNRFIYNSMITGFKNMNNVEEAIDLYKKMVNEGIPCD---- 528
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
L +YT +++ L+SG RLL +S DI EM S
Sbjct: 529 LKTYT-----------SLIDGLLKSG-------RLLYAS-------------DIHTEMLS 557
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G PD L++ LC Q A K+L+ M+ +P + Y+ +I +
Sbjct: 558 KGILPDDRAHTVLINGLCNKGQFENARKILEDMNGKNMIPSVLIYNTLIAGHFKEGNLQE 617
Query: 225 AVEMMKEMVLNMGLMPRQ 242
A + EM L+ GL+P
Sbjct: 618 AFRLHDEM-LDRGLVPDN 634
>gi|15238810|ref|NP_197340.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635760|sp|Q94JX6.2|PP391_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g18390, mitochondrial; Flags: Precursor
gi|332005166|gb|AED92549.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 459
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 35/258 (13%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+++R +R G P + +L + W + + + L EM G++P + L+
Sbjct: 201 AYALIRRMIRKGLKPDKRTYAILVNGWCSA-GKMKEAQEFLDEMSRRGFNPPARGRDLLI 259
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK-------- 230
L L A +++ M+ VPD+++++I+I A+S + + +EM
Sbjct: 260 EGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLC 319
Query: 231 -EMVLNMGLMPRQGMVIKVAAALR-------------------------ANREMWKAVEM 264
++ L+P + K+ A R N A
Sbjct: 320 VDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSF 379
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ K P Y +++ C +++ A ++ MTE G +P + V +GL
Sbjct: 380 FSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKN 439
Query: 325 VGEWKLATVVRQRFAELK 342
G+ LA + Q +L+
Sbjct: 440 GGKHDLAMRIEQLEVQLR 457
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSI 211
+S+ IL +MK + T +++ + +A ++ G+ + C ++ Y+
Sbjct: 128 ESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNS 187
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
++ A+ + + A +++ M+ GL P + + + +M +A E ++ + R+
Sbjct: 188 LLHALCDVKMFHGAYALIRRMI-RKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRR 246
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G +G ++++EG L A + V MT+ GF+P I+ ++E ++ GE
Sbjct: 247 GFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGE 302
>gi|225441858|ref|XP_002278530.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Vitis vinifera]
Length = 798
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/166 (19%), Positives = 76/166 (45%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + Y+P+ T L++ LC + +A K+ M+ P+ Y+I++ + A+
Sbjct: 191 QMLKLNYNPNRATFVILLNGLCKNGKTDDALKMFDEMTQKGIPPNTMIYTIILSGLCQAK 250
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+T+D ++ M ++ G P + ++ +A +++ E++G +G +GY
Sbjct: 251 RTDDVHRLLNTMKVS-GCCPDSITCNALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGY 309
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+++G + Y + M + G P + + ++ G VG
Sbjct: 310 SSLIDGLFRAKRYDEVQEWCRKMFKAGIEPDVVLYTILIRGFCEVG 355
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 78/211 (36%), Gaps = 43/211 (20%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCN 175
AL + + G P I ++ S CQ++ D+ L MK G PD TCN
Sbjct: 220 ALKMFDEMTQKGIPPNTMIYTIILSGL----CQAKRTDDVHRLLNTMKVSGCCPDSITCN 275
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + Q+ EA +L+ V ++ YS +I + A++ ++ E ++M
Sbjct: 276 ALLDGFCKLGQIDEAFALLQLFEKEGYVLGIKGYSSLIDGLFRAKRYDEVQEWCRKM-FK 334
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P V + L R C +G Y
Sbjct: 335 AGIEPD--------------------VVLYTILIRGFCEVGMVDY--------------- 359
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + MT+RG P +++G VG
Sbjct: 360 ALNMLNDMTQRGLSPDTYCYNALIKGFCDVG 390
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 146 LERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ER C+S + +L+++ G PD T N L++ C + A K+ + +
Sbjct: 501 VERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLFRELQLKGH 560
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
PD +Y +I + DA ++ +MV N
Sbjct: 561 SPDSVTYGTLIDGFHRVDREEDAFRVLDQMVKN 593
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 36/65 (55%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + +V LC +++A K+L ++ + VPD+ +Y+++I A+ N A ++
Sbjct: 493 DTASLQTMVERLCESGLILKAYKLLMQLADSGVVPDIMTYNVLINGFCKAKNINGAFKLF 552
Query: 230 KEMVL 234
+E+ L
Sbjct: 553 RELQL 557
>gi|449446442|ref|XP_004140980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 8/211 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPD 170
H + A +L+ GC P ++ A ++ C++ ++ +M GY+P+
Sbjct: 659 HKVKDARDLLETMFVDGCEP----NTIVYDALIDGFCKAAKLDEAQEVFHKMVEHGYNPN 714
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ L +L KVL M C P++ Y+ +I +S KT++A ++M
Sbjct: 715 VYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + ++ K +E+ + KGC F Y V++ C
Sbjct: 775 -MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCAT 833
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
A + M + + ++ KV+EG
Sbjct: 834 GHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G+ PD T + ++ LC ++ A + K M VPD+ +Y+I+I S
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A A + EMV + G P + A +++ A E+ E + KGC
Sbjct: 536 KAGIIKQAHNWLDEMVRD-GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP----YIKVRQKVVE 320
Y +++G + A + M IP Y K++ V E
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ L R + C+P Q +L L ++ Q IL M + G +P N LV
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKK-QLGRCKRILSMMIAEGCYPSYTIFNSLV 385
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-----TNDAVEMMKEMV 233
+ C D A K+LK M EC P Y+I+IG++ + + T + E +
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEM 445
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
L+ G + + V+ A L + KA ++I
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC + +A KV+ M VPD +YS VIG + A + +A + KEM G++P
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK-GTGVVP 522
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A ++ + R GC Y ++ L+ ++ +A +
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
M +G P + +++G G + A + R
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 22/261 (8%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-----VPQ 136
+DEM+ R P + L + + +A + + + GC P
Sbjct: 547 LDEMV------RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 137 IRLLLSSAWLERRCQ-------SQSVADILLEMK---SIGYHPDCGTCNYLVSSLCAIDQ 186
I S +E+ CQ + D+ + K ++ P+ T LV LC +
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHK 660
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
+ +A +L+ M C P+ Y +I A K ++A E+ +MV G P
Sbjct: 661 VKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV-EHGYNPNVYTYS 719
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L ++ + ++++ + C Y +++G + + A K ++ M E+
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779
Query: 307 GFIPYIKVRQKVVEGLAGVGE 327
G P + +++G G+
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGK 800
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 52/116 (44%), Gaps = 1/116 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ N ++S LC EA L M S C+P++++Y I++ ++ +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ M+ G P + + A + + A ++++ +E+ C G+ Y +++
Sbjct: 366 LSMMIAE-GCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420
>gi|147843358|emb|CAN80524.1| hypothetical protein VITISV_030537 [Vitis vinifera]
Length = 714
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
AL I++ ++GC P + SA + C+ + ++ EMKS+G PD
Sbjct: 334 ALKIMEFMKKNGCNP----NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYT 389
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ C ++ EA ++LK M +C D ++++++G + + +A M++
Sbjct: 390 TLINFFCRAGRVDEAMELLKDMXENKCRADTVTFNVILGGLCREGRFEEAXGMLER---- 445
Query: 236 MGLMPRQGMVIKVAA------ALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCL 288
+P +G+ + A+ +L E+ KA +++ + +G P E++V C
Sbjct: 446 ---LPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLC- 501
Query: 289 ECREYILAGKTVMGMTERGFIP 310
E + A ++G+ E GF P
Sbjct: 502 EAGKVGDAVMALLGLLELGFKP 523
>gi|225451354|ref|XP_002275019.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 744
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 72/161 (44%), Gaps = 1/161 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD + L++ C I ++ +A + + M E +PD ++Y+ ++ + + DA
Sbjct: 331 GFAPDVISYTTLINGYCKIHKIDKAMYLFEEMCRKEWIPDTKTYNTLMHGLCHVGRLQDA 390
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV G MP + +L N + +A+ +++ +E Q Y ++++
Sbjct: 391 IALFHEMVAR-GQMPDLVTYSILLDSLCKNCHLEEAMALLKAIEASNLNPDIQVYNIIID 449
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G E A ++ +G P + ++ GL G
Sbjct: 450 GMCRAGELEAARDLFSNLSSKGLHPSVWTYNIMIHGLCKRG 490
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 12/242 (4%)
Query: 107 SYTLQSLH--PLPLALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILL 160
++ +SLH L AL+ R L P P I +LL S A ++ +V +
Sbjct: 26 NFHSKSLHFNTLDDALSSFNRLLHMH--PPPSIVDFAKLLTSIAKMK---HYSTVLSLST 80
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T N L++S C ++++ A VL + PD +++ +I +
Sbjct: 81 QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 140
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A+ + +M+ + G P + L A+ ++ +E+ C Y
Sbjct: 141 KIGEALHLFDKMI-DEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 199
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+++ + R+ A M +G P I +V L + EWK T + +
Sbjct: 200 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 259
Query: 341 LK 342
K
Sbjct: 260 SK 261
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 58/249 (23%), Positives = 105/249 (42%), Gaps = 10/249 (4%)
Query: 79 IKVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
+KV D M+ + F P I+Y L++ + +H + A+ + + R +P +
Sbjct: 321 VKVFDMMVRKGFAP------DVISYTTLINGYCK-IHKIDKAMYLFEEMCRKEWIPDTKT 373
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L L + Q + EM + G PD T + L+ SLC L EA +LK +
Sbjct: 374 YNTLMHG-LCHVGRLQDAIALFHEMVARGQMPDLVTYSILLDSLCKNCHLEEAMALLKAI 432
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
++ PD++ Y+I+I M A + A ++ + + GL P + L
Sbjct: 433 EASNLNPDIQVYNIIIDGMCRAGELEAARDLFSNLS-SKGLHPSVWTYNIMIHGLCKRGL 491
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A ++ ++ C Y + G L+ E + A + + M RGF +
Sbjct: 492 LNEANKLFMEMDGNDCSPDGCTYNTIARGFLQNNETLRAIQLLEEMLARGFSADVSTTTL 551
Query: 318 VVEGLAGVG 326
+VE L+ G
Sbjct: 552 LVEMLSDDG 560
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/229 (21%), Positives = 95/229 (41%), Gaps = 12/229 (5%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L+ + A ++L + L+ G P P L + C + +
Sbjct: 89 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTL----IRGLCVEGKIGE 144
Query: 158 ILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L +M G+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I
Sbjct: 145 ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIID 204
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKG 272
++ R+ +A + +MV G+ P + AL N WK V + + + K
Sbjct: 205 SLCKDRQVTEAFNLFSQMV-GQGISPDIFTYTSLVHAL-CNLCEWKHVTTLLNQMVNSKI 262
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
P + VV+ + + A + V M +RG P + +++G
Sbjct: 263 LP-DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 310
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 79/195 (40%), Gaps = 11/195 (5%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ + D++++ G PD T L+ C ++ EA KV M PD+ SY+
Sbjct: 284 EAHEIVDMMIQR---GVEPDVVTYTTLMDGHCLQSEMDEAVKVFDMMVRKGFAPDVISYT 340
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I K + A+ + +EM +P + L + A+ + +
Sbjct: 341 TLINGYCKIHKIDKAMYLFEEMC-RKEWIPDTKTYNTLMHGLCHVGRLQDAIALFHEMVA 399
Query: 271 KGCPIGFQGYEVVVEG-CLECR-EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+G Y ++++ C C E +A + + P I+V +++G+ GE
Sbjct: 400 RGQMPDLVTYSILLDSLCKNCHLEEAMA--LLKAIEASNLNPDIQVYNIIIDGMCRAGEL 457
Query: 329 KLATVVRQRFAELKS 343
+ A R F+ L S
Sbjct: 458 EAA---RDLFSNLSS 469
>gi|224078588|ref|XP_002305565.1| predicted protein [Populus trichocarpa]
gi|222848529|gb|EEE86076.1| predicted protein [Populus trichocarpa]
Length = 757
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 73/153 (47%), Gaps = 4/153 (2%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
I + +LR G P +L + L + + +++ M G+ PD T N L+S L
Sbjct: 288 IEEMSLREGFFPDKYTFNMLVNG-LSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGL 346
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN-MGLMP 240
C + ++ EA KVL M +C P+ +Y+ +I + + +A ++ +VL G++P
Sbjct: 347 CKLGEVDEAVKVLNQMIERDCSPNTVTYNTIISTLCKENQVEEATKLA--LVLTGKGILP 404
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ L +R A+E+ + ++ KGC
Sbjct: 405 DVCTYNSLIQGLCLSRNHTVAMELYKEMKTKGC 437
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/179 (26%), Positives = 83/179 (46%), Gaps = 9/179 (5%)
Query: 150 CQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V + ++ +M G PD T N L++ C + +AA +++ M+S C PD+
Sbjct: 522 CKSERVEEASQLMDQMIMEGLRPDKFTYNSLLTYFCKAGDIKKAADIVQTMASDGCEPDI 581
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVL-NMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I + A + A ++++ + + + L P V AL + +AV +
Sbjct: 582 VTYGTLIAGLCKAGRVEAATKLLRTIQMKGINLTPHA--YNPVIQALFRRKRSKEAVRLF 639
Query: 266 -EFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E +E+ P Y++V G C A VM M ERG++P + EGL
Sbjct: 640 REMIEKAEAPDAVT-YKIVFRGLCQGGGPIGEAVDFVMEMLERGYVPEFSSFYMLAEGL 697
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/162 (29%), Positives = 80/162 (49%), Gaps = 19/162 (11%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTL----QSLHPLPLALAILQRTLRSGCVP- 133
+KV+++M+E R S + Y+ ++S TL Q LAL + + G +P
Sbjct: 356 VKVLNQMIE-----RDCSPNTVTYNTIIS-TLCKENQVEEATKLALVLTGK----GILPD 405
Query: 134 VPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
V L+ L R + +VA ++ EMK+ G HPD T N L+ SLC +L EA
Sbjct: 406 VCTYNSLIQGLCLSR---NHTVAMELYKEMKTKGCHPDEFTYNMLIDSLCFRGKLQEALN 462
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+LK M + C ++ +Y+ +I ++ +A E+ +M L
Sbjct: 463 LLKEMEVSGCARNVITYNTLIDGFCKNKRIAEAEEIFDQMEL 504
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 76/206 (36%), Gaps = 35/206 (16%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI-------- 213
M S G PD T N L+ +LC Q+ A +++ M +PD ++++ ++
Sbjct: 186 MVSRGIRPDVSTFNILIKALCRAHQIRPAILLMEEMEDFGLLPDEKTFTTIMQGFIEEGN 245
Query: 214 --GAMSTAR-------------------------KTNDAVEMMKEMVLNMGLMPRQGMVI 246
GAM + +A+ ++EM L G P +
Sbjct: 246 LDGAMRVKEQMVEAGCVVTNVTVNVLVNGFCKEGRIEEALRFIEEMSLREGFFPDKYTFN 305
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L + A+E+++ + R+G Y ++ G + E A K + M ER
Sbjct: 306 MLVNGLSKTGHVKHALEVMDMMLREGFDPDIYTYNSLISGLCKLGEVDEAVKVLNQMIER 365
Query: 307 GFIPYIKVRQKVVEGLAGVGEWKLAT 332
P ++ L + + AT
Sbjct: 366 DCSPNTVTYNTIISTLCKENQVEEAT 391
>gi|357141282|ref|XP_003572167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g12100,
mitochondrial-like [Brachypodium distachyon]
Length = 686
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 58/115 (50%), Gaps = 3/115 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYL 177
A+AIL +P Q+ + A++E C S A +L E MKS G P T N L
Sbjct: 487 AVAILDDMFIKDVLPGAQVYNAIIDAYIE--CGSTDQAFMLAEKMKSSGVPPSIVTYNLL 544
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ LC Q+ EA ++L + + PD+ SY+ +I A T+ A+E+ KEM
Sbjct: 545 IKGLCKQSQISEAEELLDSLRNYGLAPDVISYNTLISACCYRSNTDRALELEKEM 599
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 91/208 (43%), Gaps = 16/208 (7%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLV 178
+LQ + SG + I L + + CQ + I +MKS PD T N L+
Sbjct: 350 VLQTLVNSGLLQTTVIYNTLINGY----CQIGDLEGAFSIFQQMKSRLIRPDHITYNALI 405
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ L ++++ EA ++ M P +E+++ +I A A + ++ +M GL
Sbjct: 406 NGLGKVERITEAHDLVIEMEKNGVNPSVETFNTLIDAYGRAGQLEKCFIILSDM-QEKGL 464
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC----REYI 294
P + A N ++ +AV +++ + K G Q Y +++ +EC + ++
Sbjct: 465 KPNVVSYGSIVNAFCKNGKILEAVAILDDMFIKDVLPGAQVYNAIIDAYIECGSTDQAFM 524
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
LA K M G P I +++GL
Sbjct: 525 LAEK----MKSSGVPPSIVTYNLLIKGL 548
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G P+ T N L+S LC ++ E A VL M+S + VPD +YSI+ S
Sbjct: 248 QMLRHGLKPNVITYNVLLSGLCRAGRMGETAAVLDEMASRKMVPDGFTYSILFDGHSRTG 307
Query: 221 KTNDAVEMMKEMV 233
+ + + +E V
Sbjct: 308 DSQTMLSLFEESV 320
>gi|168011113|ref|XP_001758248.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162690704|gb|EDQ77070.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 658
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 55/255 (21%), Positives = 110/255 (43%), Gaps = 6/255 (2%)
Query: 22 FSSLRSMS---SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHR 78
++ ++S S +LRTL + A +Q+ +L+ E+A + FS+ R
Sbjct: 242 YAEMKSKSYKINLRTLNALLSAYTRKSLLEQVEKLMQDAEDAGLKLSTFSYGLLIDAYSR 301
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
+D+ +F ++ + P A+ Y L ++ + +L+ S P I
Sbjct: 302 AGRLDQAKAAFHNMKVENVPANAFIYSRLMVAYRNARQWDGTIRLLKDMYASNIKPNQFI 361
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L + + Q++ +M G+ PD T N L+ + C + EA +LK M
Sbjct: 362 FNILIDTYGKFGRLPQAMR-TFAQMDKEGFKPDVVTWNSLIEAHCRAGLITEALDLLKQM 420
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
ECVP L +Y+I++ A+ + + ++ EM GL P + + ++
Sbjct: 421 QERECVPSLHTYNIILNALGWHNRWKEMALLLDEMRFK-GLDPNVVTYTTLVDSYGTSKR 479
Query: 258 MWKAVEMIEFLERKG 272
+A E ++ ++ +G
Sbjct: 480 YREASEYLKQMKSQG 494
>gi|222630937|gb|EEE63069.1| hypothetical protein OsJ_17877 [Oryza sativa Japonica Group]
Length = 702
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 7/294 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + +I LL A P+ F+ + R ++D+ + F L+ R +
Sbjct: 138 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 197
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL AL +L+ SGC P L+ + R + A L
Sbjct: 198 YNALLQ-VFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTY-ARAGFFEEAAKCLDT 255
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ + ++ EA + M VP++ +Y+++ G + +
Sbjct: 256 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 315
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGY 280
+EM++EM + G P + + A+ R M V ++ ++ G + Y
Sbjct: 316 FTAMLEMLEEMSRS-GCTPNR-VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTY 373
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ C A K M GF P + ++ L+ G+W A +
Sbjct: 374 NTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 427
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 17 PCLLQFSSL--------RSMSSLRTLEETVRAAV--DAKDYQQIPELL---GSFEEACQN 63
PC++ +++L +LR L+E + DA Y ++ G FEEA +
Sbjct: 193 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 252
Query: 64 ----------PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIAYDYLLSYTLQS 112
PN F++ + + +DE L F ++ P + L+ L
Sbjct: 253 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 312
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L +L+ RSGC P ++ A +R V +L MKS G
Sbjct: 313 KSRFTAMLEMLEEMSRSGCTP-NRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 371
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+S+ A K+ M S+ P L +Y+ ++ +S + A ++ +M
Sbjct: 372 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 431
Query: 233 VLNMGLMPRQ 242
+ N G P
Sbjct: 432 LKN-GFKPND 440
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ +K G PD T N L+ ++ EA K+LK + S++ PD+ SY+ VI
Sbjct: 531 EMFDSIKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGF 590
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
+A ++ EM+ + G+ P
Sbjct: 591 CKQGLIKEAQRILSEMIAD-GMAP 613
>gi|413922833|gb|AFW62765.1| hypothetical protein ZEAMMB73_408366 [Zea mays]
Length = 820
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/253 (22%), Positives = 101/253 (39%), Gaps = 11/253 (4%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
IDE LE F R ++P + L L L +LQ+ G P + L
Sbjct: 215 IDEALELF---REMTQPDMYTHAALVKGLCDAGRGEEGLCMLQKMKELGWRPTTRAYAAL 271
Query: 142 SSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
W R +++ IL EM G P TC +V++ C ++ A +V + M
Sbjct: 272 VDLWC-REQKAEEAEKILNEMFDSGLMPCVVTCTIVVNAYCREGRMSGAVRVFESMRFKG 330
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA---NREM 258
C P++ +Y+ ++ A K A+ ++ +M G+ P V+ +R + +
Sbjct: 331 CEPNVWTYNAIVQGFCNAGKVYKAMALLDQM-RECGVEPD---VVTYNLLIRGQCIDGHI 386
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A ++ +E G Y V+++ + + A G+ RG P V
Sbjct: 387 GSAFRLLRLMEGNGLAADQYTYNVLIDALCKTGKVDEACSLFDGLEYRGIRPNSVTFNTV 446
Query: 319 VEGLAGVGEWKLA 331
+ GL G++ +A
Sbjct: 447 INGLCKAGKFDVA 459
>gi|242071495|ref|XP_002451024.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
gi|241936867|gb|EES10012.1| hypothetical protein SORBIDRAFT_05g022840 [Sorghum bicolor]
Length = 813
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 60/232 (25%), Positives = 100/232 (43%), Gaps = 11/232 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H L LA + L++G I ++ S L C+++ A DILL M +G P
Sbjct: 122 HRPKLTLAFFGQVLKTGL----GIDTIMISNLLRGLCEAKRTAEALDILLHRMPHLGCVP 177
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + ++ SLC+ + +A ++L+ M+ A C+P+ +Y+ VI N A +
Sbjct: 178 DVFSYCIVLKSLCSDRKSGQADELLRMMAEGGAVCLPNAVAYNTVIDGFFKEGDVNKACD 237
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ EMV G+ P V AL R M KA ++ + KG Y ++ G
Sbjct: 238 LFNEMV-QRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGY 296
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ A + MT +G +P + ++ L G+ K A V A
Sbjct: 297 SSTGQWKEAVRVSKKMTSQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMA 348
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 1/184 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EM G PD T N +V++LC + +A +L+ M +PD +Y+ +I
Sbjct: 237 DLFNEMVQRGISPDLSTYNCVVNALCKARAMDKAEAILRQMVDKGVLPDNWTYNSLIYGY 296
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S+ + +AV + K+M + G++P + + A+L + ++ A ++ + + KG
Sbjct: 297 SSTGQWKEAVRVSKKMT-SQGILPDVVTLNSLMASLCKHGKIKDARDVFDSMAMKGQKTD 355
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y++++ G + + M G P + +++ A G AT++
Sbjct: 356 IFSYKIMLNGYATKGCLVDLTELFNLMLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFN 415
Query: 337 RFAE 340
E
Sbjct: 416 EMRE 419
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 80/207 (38%), Gaps = 16/207 (7%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL-EMKSIGYHPDCGTCNYLVSSLCAID 185
L G P I +L A+ +C A I+ EM+ G PD T + ++++LC I
Sbjct: 383 LSDGIAPDSHIFNVLIKAY--AKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIG 440
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
++ +A + M P + +Y +I T A +++ +M +N G+ P G
Sbjct: 441 KMDDAVEKFNQMIDQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQM-MNKGMRPDIGCF 499
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG--- 302
+ L + A + +F G Y +++G Y L GK
Sbjct: 500 NFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDG------YCLVGKMENALRV 553
Query: 303 ---MTERGFIPYIKVRQKVVEGLAGVG 326
M G P + V +V G VG
Sbjct: 554 FDVMVSAGIQPNVVVYGTLVNGYCKVG 580
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 67/170 (39%), Gaps = 1/170 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD N L+ + L A + M PD+ +YS VI A+ K
Sbjct: 382 MLSDGIAPDSHIFNVLIKAYAKCGMLDRATIIFNEMREQGVEPDVVTYSTVIAALCRIGK 441
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+DAVE +M+ + G+ P + + ++ KA +++ + KG +
Sbjct: 442 MDDAVEKFNQMI-DQGVAPSISTYHFLIQGFCTHGDLLKAKDLVLQMMNKGMRPDIGCFN 500
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ + + A G P + V +++G VG+ + A
Sbjct: 501 FIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGYCLVGKMENA 550
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 29/151 (19%), Positives = 66/151 (43%), Gaps = 1/151 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D++L+M + G PD G N+++++LC + ++++A + S P++ Y+ ++
Sbjct: 482 DLVLQMMNKGMRPDIGCFNFIINNLCKLGRVMDAQNIFDFTISIGLHPNVMVYNTLMDGY 541
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A+ + MV + G+ P + + + + + + + KG
Sbjct: 542 CLVGKMENALRVFDVMV-SAGIQPNVVVYGTLVNGYCKVGRIDEGLSLFREILHKGIKPS 600
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERG 307
Y +++ G + + A MTE G
Sbjct: 601 TTLYNIILHGLFQAGRTVPAKVKFHEMTESG 631
>gi|115462947|ref|NP_001055073.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|50878350|gb|AAT85125.1| unknown protein, contains pentatricopeptide (PPR) repeat, PF01535
[Oryza sativa Japonica Group]
gi|113578624|dbj|BAF16987.1| Os05g0275000 [Oryza sativa Japonica Group]
gi|215695094|dbj|BAG90285.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 793
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 7/294 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + +I LL A P+ F+ + R ++D+ + F L+ R +
Sbjct: 229 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL AL +L+ SGC P L+ + R + A L
Sbjct: 289 YNALLQ-VFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTY-ARAGFFEEAAKCLDT 346
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ + ++ EA + M VP++ +Y+++ G + +
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGY 280
+EM++EM + G P + + A+ R M V ++ ++ G + Y
Sbjct: 407 FTAMLEMLEEMSRS-GCTPNR-VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTY 464
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ C A K M GF P + ++ L+ G+W A +
Sbjct: 465 NTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518
Score = 42.0 bits (97), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 17 PCLLQFSSL--------RSMSSLRTLEETVRAAV--DAKDYQQIPELL---GSFEEACQN 63
PC++ +++L +LR L+E + DA Y ++ G FEEA +
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 343
Query: 64 ----------PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIAYDYLLSYTLQS 112
PN F++ + + +DE L F ++ P + L+ L
Sbjct: 344 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 403
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L +L+ RSGC P ++ A +R V +L MKS G
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTP-NRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 462
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+S+ A K+ M S+ P L +Y+ ++ +S + A ++ +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522
Query: 233 VLNMGLMPRQ 242
+ N G P
Sbjct: 523 LKN-GFKPND 531
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+K G PD T N L+ ++ EA K+LK + S++ PD+ SY+ VI
Sbjct: 627 IKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 686
Query: 222 TNDAVEMMKEMVLNMGLMP 240
+A ++ EM+ + G+ P
Sbjct: 687 IKEAQRILSEMIAD-GMAP 704
>gi|8843735|dbj|BAA97283.1| unnamed protein product [Arabidopsis thaliana]
Length = 1274
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++Q+ +SG P + +L W ++ + ++ ++L MKS G D T N L+
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLH--WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC +++ + +L+ M P+ +Y+ +I S K A +++ EM L+ GL P
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM-LSFGLSP 331
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A++M +E KG Y V+++G + E+ LA
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 391
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M M G +++GL G A V+
Sbjct: 392 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM +G+HP T L+ LC L EA K LK + + D Y+ ++ AM +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627
Query: 221 KTNDAVEMMKEMV 233
AV + EMV
Sbjct: 628 NLAKAVSLFGEMV 640
>gi|125551633|gb|EAY97342.1| hypothetical protein OsI_19265 [Oryza sativa Indica Group]
Length = 793
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/294 (20%), Positives = 116/294 (39%), Gaps = 7/294 (2%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IA 101
+ + +I LL A P+ F+ + R ++D+ + F L+ R +
Sbjct: 229 GRSWPRIVALLEEMRAAGVEPDDFTASTVIAACGRDGLLDQAVAFFEDLKARGHVPCVVT 288
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y+ LL AL +L+ SGC P L+ + R + A L
Sbjct: 289 YNALLQ-VFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTY-ARAGFFEEAAKCLDT 346
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N ++++ + ++ EA + M VP++ +Y+++ G + +
Sbjct: 347 MTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGKKSR 406
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGY 280
+EM++EM + G P + + A+ R M V ++ ++ G + Y
Sbjct: 407 FTAMLEMLEEMSRS-GCTPNR-VTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRDTY 464
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ C A K M GF P + ++ L+ G+W A +
Sbjct: 465 NTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSI 518
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 26/250 (10%)
Query: 17 PCLLQFSSL--------RSMSSLRTLEETVRAAV--DAKDYQQIPELL---GSFEEACQN 63
PC++ +++L +LR L+E + DA Y ++ G FEEA +
Sbjct: 284 PCVVTYNALLQVFGKAGNYTEALRVLKEMEDSGCQPDAVTYNELAGTYARAGFFEEAAKC 343
Query: 64 ----------PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIAYDYLLSYTLQS 112
PN F++ + + +DE L F ++ P + L+ L
Sbjct: 344 LDTMTSKGLLPNTFTYNTVMTAYANVGRVDEALALFDRMKKNGYVPNVNTYNLIFGMLGK 403
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L +L+ RSGC P ++ A +R V +L MKS G
Sbjct: 404 KSRFTAMLEMLEEMSRSGCTP-NRVTWNTMLAVCGKRGMEDYVTRVLNGMKSCGVELSRD 462
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+S+ A K+ M S+ P L +Y+ ++ +S + A ++ +M
Sbjct: 463 TYNTLISAYGRCGSRTYAFKMYDEMISSGFTPCLTTYNALLNVLSRQGDWSTAQSIVSKM 522
Query: 233 VLNMGLMPRQ 242
+ N G P
Sbjct: 523 LKN-GFKPND 531
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+K G PD T N L+ ++ EA K+LK + S++ PD+ SY+ VI
Sbjct: 627 IKQSGLSPDLITYNSLMDMYAKSNESWEAEKILKQLKSSQVKPDVVSYNTVINGFCKQGL 686
Query: 222 TNDAVEMMKEMVLNMGLMP 240
+A ++ EM+ + G+ P
Sbjct: 687 IKEAQRILSEMIAD-GMAP 704
>gi|297809467|ref|XP_002872617.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297318454|gb|EFH48876.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 584
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 81/180 (45%), Gaps = 3/180 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R ++ +++ +MKS G +P+ T N L+ C + +L +A + + + S P L
Sbjct: 315 REMKANEANEVMDQMKSDGINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLV 374
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+I++ T+ A +++KEM G+ P + + + M KA+++
Sbjct: 375 TYNILVSGFCKKGDTSGAGKVVKEME-ERGIKPSKVTYTILIDTFARSDNMEKAIQLRSS 433
Query: 268 LERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+E G Y V++ G C++ R A + M E+ F P + +V G G
Sbjct: 434 MEELGLTPDVHTYSVLIHGFCIKGR-MNEASRLFKSMVEKKFEPNEVIYNTMVLGYCKEG 492
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ G P+ T N +++ LC + +A KV M ++ +Y+ +IG +
Sbjct: 258 KMQEHGVFPNLHTYNCVMNQLCKDGRTKDAFKVFDEMRERGVSCNIVTYNTLIGGLCREM 317
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K N+A E+M +M + G+ P + R++ KA+ + L+ +G Y
Sbjct: 318 KANEANEVMDQMKSD-GINPNLITYNTLIDGFCGVRKLGKALSLCRDLKSRGLSPSLVTY 376
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++V G + + AGK V M ERG P +++ A + A +R E
Sbjct: 377 NILVSGFCKKGDTSGAGKVVKEMEERGIKPSKVTYTILIDTFARSDNMEKAIQLRSSMEE 436
Query: 341 L 341
L
Sbjct: 437 L 437
>gi|302820627|ref|XP_002991980.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
gi|300140222|gb|EFJ06948.1| hypothetical protein SELMODRAFT_162081 [Selaginella moellendorffii]
Length = 509
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 94/210 (44%), Gaps = 7/210 (3%)
Query: 116 LPLALAILQRTLRSGCVPVP-QIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGT 173
L A A+ + + +GC P P +++ S + R +++ + D +E K + P
Sbjct: 276 LDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM---PGVPV 332
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C LV LC ++ EA +L+ M + + P + +YS VI + A + +DA ++++M
Sbjct: 333 CTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDDAYVVLQKM 392
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
G +P + A + +A E+ + + +GC + Y +++ G +
Sbjct: 393 -RRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAK 451
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M RG P + +V+GL
Sbjct: 452 VDEAIAMIEEMAGRGIQPNVVSLSTIVDGL 481
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/188 (23%), Positives = 91/188 (48%), Gaps = 12/188 (6%)
Query: 59 EACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
EA P+P S+ + + +++R+ E+++ + + P + +L L
Sbjct: 288 EAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQ--AMERKCMPGVPVCTVLVDGLCKSRR 345
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ A IL+R L +G P + + SA ++ C++ + D +L +M+ G PD
Sbjct: 346 VEEACVILERMLETG-DRAPSV--VTYSAVIDGLCKADRLDDAYVVLQKMRRAGCVPDVV 402
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T ++ + C + +L EA ++ + M C D+ +Y+I+I A K ++A+ M++EM
Sbjct: 403 TYTAIIDAFCKVGRLDEARELFQRMHERGCALDVVAYNILIRGYCRAAKVDEAIAMIEEM 462
Query: 233 VLNMGLMP 240
G+ P
Sbjct: 463 A-GRGIQP 469
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 72/303 (23%), Positives = 130/303 (42%), Gaps = 20/303 (6%)
Query: 48 QQIPE---LLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104
+QIP+ LLG + A P +F S + + D+ L+ F + A+ Y
Sbjct: 66 EQIPQAVNLLGEMKAAGITPTIVTFGSLIRKLCELNFTDKALQIFHQMIDMKVKPDAFLY 125
Query: 105 LLSY-TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK 163
+ L ++ L LA + +R ++SGC+P +L + L + C+ + I EM
Sbjct: 126 TVVIGHLCKINKLDLAASYFERMVQSGCLPDKVTYTVLVHS-LFKACKWEQGHQIFEEML 184
Query: 164 SIGYHPDCGTCNYLVSSLCA---IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
S G+ P+ T +V+ C IDQ + + LKG + P YS +I +
Sbjct: 185 SKGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRS---PSGSLYSTLIDGLCKHD 241
Query: 221 KTNDAVEMMKEMVLNM-GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ ++A E+ + ++ ++ + + A + + V+MIE GC
Sbjct: 242 RHDEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIE----AGCAPDPVS 297
Query: 280 YEVVVEG-CLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y V++ C + R + K +M ER +P + V +V+GL + A V+ +R
Sbjct: 298 YNVIIYSLCKDNR--VSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILER 355
Query: 338 FAE 340
E
Sbjct: 356 MLE 358
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 92/225 (40%), Gaps = 9/225 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS--QSVADILLEMKSIGYHPDCGTCNY 176
AL++++R +G P L S ++ C+ A L EM + G D
Sbjct: 211 ALSLMRRLKGTGRSPSGS----LYSTLIDGLCKHDRHDEARELFEMAA-GDVQDVIVYTS 265
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+S LC +L EA V M A C PD SY+++I ++ + ++A E+M + +
Sbjct: 266 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQ-AMER 324
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIE-FLERKGCPIGFQGYEVVVEGCLECREYIL 295
MP + + L +R + +A ++E LE Y V++G +
Sbjct: 325 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLETGDRAPSVVTYSAVIDGLCKADRLDD 384
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M G +P + +++ VG A + QR E
Sbjct: 385 AYVVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHE 429
>gi|255549794|ref|XP_002515948.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223544853|gb|EEF46368.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 706
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 2/144 (1%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L A+L R C S + + LEMK GY D N L+ +L ++ +A KV + M
Sbjct: 48 LVQAYL-RSCDSDNGFRVYLEMKRKGYTLDIFAFNMLLDALAKDQKVDQAFKVFEDMKKK 106
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C PD +Y+I+I K ++++ + +EM LN G P + AL +R + K
Sbjct: 107 HCEPDEYTYTIMIRMTGRIGKLDESLALFEEM-LNKGCSPNLIAYNTMIQALANSRMVDK 165
Query: 261 AVEMIEFLERKGCPIGFQGYEVVV 284
+ + + K C Y V++
Sbjct: 166 TILLFSKMMEKNCRPNEFTYSVIL 189
Score = 44.7 bits (104), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 36/144 (25%), Positives = 66/144 (45%), Gaps = 2/144 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R Q + D+ +MK G PD T N L+SS ++ EA K+ + + +++C PD
Sbjct: 294 LGRLKQISHLYDLYEKMKLDGPLPDIFTYNILISSFGRAGKVYEAIKIFEELENSDCKPD 353
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ SY+ +I + ++A +EM GL P + ++ A +
Sbjct: 354 IISYNSLINCLGKNGDLDEAHIRFREMQ-EKGLNPDVVTYSTLIECFGKTDKVEMACRLF 412
Query: 266 EFLERKGCPIGFQGYEVVVEGCLE 289
+ + +GC Y ++++ CLE
Sbjct: 413 DEMLAEGCFPNIVTYNILLD-CLE 435
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 84/192 (43%), Gaps = 7/192 (3%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYT 109
+LLG E N + + + F R+K I + + + ++ P I Y+ L+S +
Sbjct: 270 DLLGKIHEKGINTDTIMYNTVFTALGRLKQISHLYDLYEKMKLDGPLPDIFTYNILIS-S 328
Query: 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
+ A+ I + S C P + L++ L + EM+ G +
Sbjct: 329 FGRAGKVYEAIKIFEELENSDCKPDIISYNSLINC--LGKNGDLDEAHIRFREMQEKGLN 386
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T + L+ D++ A ++ M + C P++ +Y+I++ + + +T +AV++
Sbjct: 387 PDVVTYSTLIECFGKTDKVEMACRLFDEMLAEGCFPNIVTYNILLDCLERSGRTAEAVDL 446
Query: 229 MKEMVLNMGLMP 240
++ GL P
Sbjct: 447 YAKLK-QQGLTP 457
>gi|8493575|gb|AAF75798.1|AC011000_1 Contains multiple PPR Repeats PF|01535 [Arabidopsis thaliana]
Length = 514
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/219 (21%), Positives = 91/219 (41%), Gaps = 15/219 (6%)
Query: 138 RLLLSSAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ SA ++R C+ + +I EM G P+ T N ++ C+ + +A ++L
Sbjct: 79 NVVIYSAIVDRLCKDGNHIKAQNIFTEMHEKGIFPNVLTYNCMIDGYCSYGKWSDAEQLL 138
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M PD+ ++S +I A K + A E+ +EM L + P +
Sbjct: 139 RDMIERNIDPDVVTFSALINAFVKEGKVSGAEELYREM-LRRNIFPTTITYSSMIDGFCK 197
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-----------M 303
+ + A M + + KGC +++GC + +++ G +G M
Sbjct: 198 HSRLEDAKHMFDLMVSKGCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEM 257
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
G P I ++ GL G+ + A + + F + K
Sbjct: 258 ISNGVSPDIVTCNTLLAGLCENGKLEKALEMFKVFQKSK 296
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 52/253 (20%), Positives = 99/253 (39%), Gaps = 58/253 (22%)
Query: 130 GCVP-VPQIRLLLSSAWLERR------CQSQSVA---DILLEMKSIGYHPDCGTCNYLVS 179
GC P + + L+ +R CQ +V D+ EM S G PD TCN L++
Sbjct: 215 GCSPDIITLNTLIDGCCRAKRHLIHGFCQVGNVNVAQDLFQEMISNGVSPDIVTCNTLLA 274
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN---- 235
LC +L +A ++ K ++ D + +I+I M K ++A ++ + +N
Sbjct: 275 GLCENGKLEKALEMFKVFQKSKMDLDTATCNIIINGMCKGNKVDEAWDLFNSLPVNGVET 334
Query: 236 --------MGLMPRQGMVIK-----------------------VAAALRANREMWKAVEM 264
+G+ ++G ++ V + NR + +A +M
Sbjct: 335 DVVTYNILIGVFVKEGNFLRAEDIYLEMLCKGIIPSTVTYNSMVDGFCKQNR-LEEARQM 393
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKV 318
++ + +GC + +++G Y AG+ G M +RG + +
Sbjct: 394 VDSMVSEGCSPDVVTFSTLIKG------YCKAGRVDDGLELFSEMCQRGLVADTITYNAL 447
Query: 319 VEGLAGVGEWKLA 331
+ G VG+ A
Sbjct: 448 IHGFCKVGDLNGA 460
>gi|255660982|gb|ACU25660.1| pentatricopeptide repeat-containing protein [Glandularia araucana]
Length = 350
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P+ Y+ +I + A K DA+ + +E M
Sbjct: 109 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE----M 164
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 165 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HK 223
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 224 VEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 262
Score = 46.6 bits (109), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + G V +++ L + +L M G
Sbjct: 82 GYIDKSLHVLEMA------EQKGGVVDAFAYSAMING--LCKEANLDRAVSVLNGMIKSG 133
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +V + M + C P + +Y+ +I + +A
Sbjct: 134 CKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAY 193
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ KA+++ + KG Q + +++ G
Sbjct: 194 NLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHG 252
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+ + A V+ R
Sbjct: 253 LCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 303
>gi|53749325|gb|AAU90184.1| unkonwn protein [Oryza sativa Japonica Group]
gi|55168288|gb|AAV44154.1| unknown protein [Oryza sativa Japonica Group]
Length = 395
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 5/241 (2%)
Query: 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
P R A + LL L PLP +L SG P +L A +
Sbjct: 45 PAPRTARALNTLLHALLACRAPLP---ELLSECRGSGIHPDACTYNILMRAAVADSGSVD 101
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIV 212
+ + EM G P T LV++ C +L EA KV + MS + P+ Y+ +
Sbjct: 102 NACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASL 161
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ A+ K +DA + +EMV N + G +A AL + + V ++E ++ KG
Sbjct: 162 MKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKG 221
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+G + + ++ G C + + A + M + G P +V GL +G W+ A
Sbjct: 222 IKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDA 281
Query: 332 T 332
+
Sbjct: 282 S 282
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M+ G PD + N LV LC + + +A+++++ M C PD+ +Y + +
Sbjct: 250 LDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPRRGCRPDVVTYRRLFDGICD 309
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
A ++A + EMV G P + V K A
Sbjct: 310 AGGFSEARRVFNEMVFK-GFAPSKDGVRKFVA 340
>gi|334188438|ref|NP_200395.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332009303|gb|AED96686.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 1136
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++Q+ +SG P + +L W ++ + ++ ++L MKS G D T N L+
Sbjct: 255 LMQKMEKSGYAPTIVTYNTVLH--WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 312
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC +++ + +L+ M P+ +Y+ +I S K A +++ EM L+ GL P
Sbjct: 313 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM-LSFGLSP 371
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A++M +E KG Y V+++G + E+ LA
Sbjct: 372 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 431
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M M G +++GL G A V+
Sbjct: 432 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 465
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM +G+HP T L+ LC L EA K LK + + D Y+ ++ AM +
Sbjct: 608 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 667
Query: 221 KTNDAVEMMKEMV 233
AV + EMV
Sbjct: 668 NLAKAVSLFGEMV 680
>gi|296087909|emb|CBI35192.3| unnamed protein product [Vitis vinifera]
Length = 1001
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMS 198
+A ++ C V D+ +++ H DC + N L++ C I + +A + + MS
Sbjct: 259 NALMDGHCLRNEV-DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 317
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
E P+ +Y+ +I + + DA+ + EMV G +P ++ L NR +
Sbjct: 318 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHL 376
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
KA+ +++ +E Q Y +++G E A ++ +G P + +
Sbjct: 377 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 436
Query: 319 VEGLAGVG 326
+ GL G
Sbjct: 437 IHGLCKQG 444
Score = 44.7 bits (104), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 95/228 (41%), Gaps = 15/228 (6%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYL 177
+L + S +P +++ S ++ C+ +A D++ M G PD T L
Sbjct: 694 TLLNEMVNSKIMP----NVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVEPDVVTYTAL 749
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C ++ EA KV M CVP++ SY+I+I ++ + A+ ++++M L G
Sbjct: 750 MDGHCLRSEMDEAVKVFDTMVHKGCVPNVRSYNILINGYCQIQRMDKAMGLLEQMSLQ-G 808
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L+ + L + A+ + + G Y ++++ C+ + LA
Sbjct: 809 LIADTVTYNTLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLD--YLCKNHHLAE 866
Query: 298 KTVM--GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
V+ + I V ++G+ GE + A R F+ L S
Sbjct: 867 AMVLLKAIEGSNLDADILVYNIAIDGMCRAGELEAA---RDLFSNLSS 911
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L LC L +A +LK + + PD++ Y+ +
Sbjct: 342 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 401
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ M A + DA ++ + + GL P + L + +A ++ + + G
Sbjct: 402 LDGMCRAGELEDARDLFSNLS-SKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 460
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
C Y ++ G L E + + + M RGF
Sbjct: 461 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 496
Score = 44.3 bits (103), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 106/254 (41%), Gaps = 21/254 (8%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDY--LLSYTLQSLHPLPLALAILQRTLRSGCVP-- 133
+DE L +F + + P D+ LL+ ++ H L L R + S +P
Sbjct: 22 HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHS--TLLSLSRQMDSFGIPPD 79
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
V + ++++S R A L ++ +G+ PD T L+ LC ++ EA +
Sbjct: 80 VYTLAIVINSLCHLNRVDFAFSA--LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 137
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M P++ +Y +I + R+ +A + EM+ G+ P ++ + +
Sbjct: 138 FDKMIGEGFQPNVVTYGTLINGLCKDRQVTEAFNIFSEMITK-GISPN---IVTYNSLIH 193
Query: 254 ANREM--WKAVE--MIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERG 307
++ WK V M E ++ K P F VV+ C+E ++ A V M RG
Sbjct: 194 GLCKLCEWKHVTTLMNEMVDSKIMPDVFT-LNTVVDAL--CKEGMVAEAHDVVDMMIHRG 250
Query: 308 FIPYIKVRQKVVEG 321
P + +++G
Sbjct: 251 VEPNVVTYNALMDG 264
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 55/228 (24%), Positives = 95/228 (41%), Gaps = 30/228 (13%)
Query: 119 ALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL+ R L P V +LL S A ++ +V + +M S G PD T N
Sbjct: 565 ALSSFNRMLHMHPPPSTVDFTKLLTSIAKMKHY---STVLSLSTQMDSFGIPPDVYTLNI 621
Query: 177 LVSSLCAIDQLVEA----AKVLK------------------GMSSAECVPDLESYSIVIG 214
L++S C + +L A AK+LK M + PD+ +Y+ +I
Sbjct: 622 LINSFCHLRRLGYAFSVLAKLLKLGFQPDVVTYGTLMNGLCKMITKGISPDIFTYNSLIH 681
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
A+ + ++ EMV N +MP + V AL + A ++++ + ++G
Sbjct: 682 ALCNLCEWKHVTTLLNEMV-NSKIMPNVVVFSTVVDALCKEGMIAIAHDVVDMMIKRGVE 740
Query: 275 IGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++G CL E A K M +G +P ++ ++ G
Sbjct: 741 PDVVTYTALMDGHCLR-SEMDEAVKVFDTMVHKGCVPNVRSYNILING 787
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
+ Y L Y ++ H L A+A+L+ S P QI + L+ C++ +
Sbjct: 361 VTYRTLSDYLCKNRH-LDKAMALLKAIEGSNWDPDIQIY----TTILDGMCRAGELEDAR 415
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + S G P+ T N ++ LC L EA+K+ M+ C P+ +Y+++
Sbjct: 416 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 475
Query: 217 STARKTNDAVEMMKEMV 233
+ +E+++EM+
Sbjct: 476 LRNNEALRTIELLEEML 492
Score = 41.6 bits (96), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 78/174 (44%), Gaps = 14/174 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSI-GYHPDCGTCN 175
A+ + + GCVP + +L + + CQ Q + A LLE S+ G D T N
Sbjct: 762 AVKVFDTMVHKGCVPNVRSYNILINGY----CQIQRMDKAMGLLEQMSLQGLIADTVTYN 817
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM--- 232
L+ LC + +L A + M ++ +PDL +Y I++ + +A+ ++K +
Sbjct: 818 TLIHGLCHVGRLQHAIALFHEMVASGQIPDLVTYRILLDYLCKNHHLAEAMVLLKAIEGS 877
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
L+ ++ I + RA E+ A ++ L KG + Y +++ G
Sbjct: 878 NLDADILVYN---IAIDGMCRAG-ELEAARDLFSNLSSKGLQPDVRTYNIMIHG 927
>gi|449499490|ref|XP_004160831.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Cucumis sativus]
Length = 1000
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 88/211 (41%), Gaps = 8/211 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPD 170
H + A +L+ GC P ++ A ++ C++ ++ +M GY+P+
Sbjct: 659 HKVKDARDLLETMFVDGCEP----NTIVYDALIDGFCKAAKLDEAQEVFHKMVERGYNPN 714
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ L +L KVL M C P++ Y+ +I +S KT++A ++M
Sbjct: 715 VYTYSSLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLML 774
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + ++ K +E+ + KGC F Y V++ C
Sbjct: 775 -MMEEKGCKPNVVTYTAMIDGFGKAGKVDKCLELFREMGSKGCAPNFVTYTVLINHCCAT 833
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
A + M + + ++ KV+EG
Sbjct: 834 GHLDEAYALLEEMKQTYWPKHVSSYCKVIEG 864
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 70/167 (41%), Gaps = 5/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G+ PD T + ++ LC ++ A + K M VPD+ +Y+I+I S
Sbjct: 476 VIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMKGTGVVPDVYTYTILIDCFS 535
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A A + EMV + G P + A +++ A E+ E + KGC
Sbjct: 536 KAGIIKQAHNWLDEMVRD-GCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNV 594
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP----YIKVRQKVVE 320
Y +++G + A + M IP Y K++ V E
Sbjct: 595 ITYTALIDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAE 641
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 65/157 (41%), Gaps = 1/157 (0%)
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC + +A KV+ M VPD +YS VIG + A + +A + KEM G++P
Sbjct: 464 LCGFGKFEKAYKVIHEMMGNGFVPDTSTYSEVIGFLCNASRVENAFFLFKEMK-GTGVVP 522
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A ++ + R GC Y ++ L+ ++ +A +
Sbjct: 523 DVYTYTILIDCFSKAGIIKQAHNWLDEMVRDGCEPTVVTYTTLIHAYLKAKKVSVANELF 582
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
M +G P + +++G G + A + R
Sbjct: 583 ELMIAKGCFPNVITYTALIDGYCKSGNIEKACQIYAR 619
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 66/153 (43%), Gaps = 6/153 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ L R + C+P Q +L L ++ Q IL M + G +P N LV
Sbjct: 327 AMDFLNRMRSTSCIPNVQTYRILLCGCLNKK-QLGRCKRILSMMIAEGCYPSYTIFNSLV 385
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-----TNDAVEMMKEMV 233
+ C D A K+LK M EC P Y+I+IG++ + + T + E +
Sbjct: 386 HAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILIGSICSGGELPGPVTFELAEKAYNEM 445
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
L+ G + + V+ A L + KA ++I
Sbjct: 446 LSAGTVLNKVNVVSFARCLCGFGKFEKAYKVIH 478
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 50/261 (19%), Positives = 100/261 (38%), Gaps = 22/261 (8%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-----VPQ 136
+DEM+ R P + L + + +A + + + GC P
Sbjct: 547 LDEMV------RDGCEPTVVTYTTLIHAYLKAKKVSVANELFELMIAKGCFPNVITYTAL 600
Query: 137 IRLLLSSAWLERRCQ-------SQSVADILLEMK---SIGYHPDCGTCNYLVSSLCAIDQ 186
I S +E+ CQ + D+ + K ++ P+ T LV LC +
Sbjct: 601 IDGYCKSGNIEKACQIYARMRGDADIPDVDMYFKIKNNVAEKPNVVTYGALVDGLCKAHK 660
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
+ +A +L+ M C P+ Y +I A K ++A E+ +MV G P
Sbjct: 661 VKDARDLLETMFVDGCEPNTIVYDALIDGFCKAAKLDEAQEVFHKMV-ERGYNPNVYTYS 719
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L ++ + ++++ + C Y +++G + + A K ++ M E+
Sbjct: 720 SLIDRLFKDKRLDLVLKVLSKMLENSCAPNIVIYTEMIDGLSKVAKTDEAYKLMLMMEEK 779
Query: 307 GFIPYIKVRQKVVEGLAGVGE 327
G P + +++G G+
Sbjct: 780 GCKPNVVTYTAMIDGFGKAGK 800
Score = 37.7 bits (86), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 23/116 (19%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ N ++S LC EA L M S C+P++++Y I++ ++ +
Sbjct: 306 PNTILYNKMISGLCEASFFEEAMDFLNRMRSTSCIPNVQTYRILLCGCLNKKQLGRCKRI 365
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ M++ G P + + A + + A ++++ +E+ C G+ Y +++
Sbjct: 366 L-SMMIAEGCYPSYTIFNSLVHAYCKSDDFSYAYKLLKKMEKCECKPGYVVYNILI 420
>gi|346703736|emb|CBX24404.1| hypothetical_protein [Oryza glaberrima]
Length = 1765
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL ++ + + + LEM+ G+ P+ N ++ +LC +A +LK M ++ C P
Sbjct: 1226 WLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCKCRSATQAMVILKQMFASGCDP 1285
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE- 263
D+ +++ +I + A ++E + L P Q + E+ A +
Sbjct: 1286 DIITFNTLITGLCHEGHVRKAEHFLREAI-RRELNPNQLSYTPLIHGFCMRGELMVASDL 1344
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQK 317
++E + R P +VV G L ++AGK MTER P + +
Sbjct: 1345 LVEMMGRGHTP------DVVTFGAL-IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 1397
Query: 318 VVEGL 322
++ GL
Sbjct: 1398 LISGL 1402
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+D+L+EM G+ PD T L+ L ++ EA V + M+ + PD+ Y+++I
Sbjct: 1342 SDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 1401
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CP 274
+ R A +++EM L + P + + + + + A ++ EF+E KG CP
Sbjct: 1402 LCKKRMLPAAKNILEEM-LEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGICP 1460
Score = 44.3 bits (103), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LP A IL+ L P + L ++ +S+++ D I M+ G PD
Sbjct: 1408 LPAAKNILEEMLEKNVQPDEFVYATLIDGFI----RSENLGDARKIFEFMEHKGICPDIV 1463
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+CN ++ C + EA + M C+PD +Y+ VI + N A+ + +M
Sbjct: 1464 SCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDM 1523
Query: 233 V 233
+
Sbjct: 1524 I 1524
>gi|297828900|ref|XP_002882332.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
gi|297328172|gb|EFH58591.1| hypothetical protein ARALYDRAFT_896436 [Arabidopsis lyrata subsp.
lyrata]
Length = 790
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/211 (25%), Positives = 86/211 (40%), Gaps = 28/211 (13%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A LQ+ + SG PV + +A++E C + Q D++++MK G PD T
Sbjct: 486 AHKCLQKMMSSGEKPVARTY----NAFIEVYCSAGKVQEAEDMMVQMKEEGVPPDDFTYT 541
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-TNDAVEMMKEMVL 234
L+ + + A VLK M A+C P ++ +I + R + E E V
Sbjct: 542 SLIKAYGKLGLTYSAFDVLKSMFDADCEPSHHTFLSLIKQLFDKRYVVEKSGETGVESVS 601
Query: 235 NMGLMPRQGMVIKVAAALRANREMWK------AVEMIEFLERKGCPIGFQGYEVVVEGCL 288
N G +P MWK +E+ E +E+ GC + YE ++ G
Sbjct: 602 NFGDVP--------------GSNMWKMMEFDIVIELFEEMEKHGCTPDSKCYEKLISGIC 647
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+ +A K + M + G P V V+
Sbjct: 648 KVENLGIALKLLDQMQKEGISPSEMVFNAVI 678
>gi|115442501|ref|NP_001045530.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|15289974|dbj|BAB63669.1| pentatricopeptide (PPR) repeat-containing protein -like [Oryza
sativa Japonica Group]
gi|113535061|dbj|BAF07444.1| Os01g0970900 [Oryza sativa Japonica Group]
gi|125573469|gb|EAZ14984.1| hypothetical protein OsJ_04919 [Oryza sativa Japonica Group]
gi|215678751|dbj|BAG95188.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215693250|dbj|BAG88632.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 573
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A+I+ MK G+ PD T + L+ LC ++ EA K L M + CVPDL++++++I
Sbjct: 333 AAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQ 392
Query: 215 AMSTARKTNDAVEMMKEMV 233
A + A++ EMV
Sbjct: 393 GHCAAGEVEKALQYFTEMV 411
>gi|255660954|gb|ACU25646.1| pentatricopeptide repeat-containing protein [Verbena perennis]
Length = 375
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA--NREMW-KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + +EM+ +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 77/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KKEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M + P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRWKYAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|125529279|gb|EAY77393.1| hypothetical protein OsI_05381 [Oryza sativa Indica Group]
Length = 573
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A+I+ MK G+ PD T + L+ LC ++ EA K L M + CVPDL++++++I
Sbjct: 333 AAEIVKRMKGEGHQPDNITYSQLIFGLCKANRFDEARKALDEMEAEGCVPDLKTWTMLIQ 392
Query: 215 AMSTARKTNDAVEMMKEMV 233
A + A++ EMV
Sbjct: 393 GHCAAGEVEKALQYFTEMV 411
>gi|359492929|ref|XP_002283907.2| PREDICTED: pentatricopeptide repeat-containing protein
At5g18475-like [Vitis vinifera]
Length = 513
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/202 (23%), Positives = 94/202 (46%), Gaps = 22/202 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
AL I++ ++GC P + SA + C+ + ++ EMKS+G PD
Sbjct: 291 ALKIMEFMKKNGCNP----NVFNYSALMNGFCKEGRLEEAKEVFDEMKSLGLKPDTVGYT 346
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ C ++ EA ++LK M +C D ++++++G + + +A M++
Sbjct: 347 TLINFFCRAGRVDEAMELLKDMRENKCRADTVTFNVILGGLCREGRFEEARGMLER---- 402
Query: 236 MGLMPRQGMVIKVAA------ALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCL 288
+P +G+ + A+ +L E+ KA +++ + +G P E++V C
Sbjct: 403 ---LPYEGVYLNKASYRIVLNSLCREGELQKATQLVGLMLGRGVLPHFATSNELLVHLC- 458
Query: 289 ECREYILAGKTVMGMTERGFIP 310
E + A ++G+ E GF P
Sbjct: 459 EAGKVGDAVMALLGLLELGFKP 480
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 65/136 (47%), Gaps = 2/136 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC-VPDLESYSIVIGAM 216
+L KS+ P+ N LV C + A +V++ M + P+L +YS +I +
Sbjct: 187 LLNSKKSLNLEPNTCIFNILVKHHCKNGDIDSAFEVVEEMKKSHVSYPNLITYSTLINGL 246
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + +A+E+ +EMV ++P + ++ +A++++EF+++ GC
Sbjct: 247 CGSGRLKEAIELFEEMVSKDQILPDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPN 306
Query: 277 FQGYEVVVEG-CLECR 291
Y ++ G C E R
Sbjct: 307 VFNYSALMNGFCKEGR 322
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 69/144 (47%), Gaps = 9/144 (6%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L++ C +++ A K+++ M C P++ +YS ++ + +A E+
Sbjct: 270 PDALTYNALINGFCHGEKVDRALKIMEFMKKNGCNPNVFNYSALMNGFCKEGRLEEAKEV 329
Query: 229 MKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
EM ++GL P G + RA R + +A+E+++ + C + V++ G
Sbjct: 330 FDEMK-SLGLKPDTVGYTTLINFFCRAGR-VDEAMELLKDMRENKCRADTVTFNVILGGL 387
Query: 288 LECREYILAGKTVMGMTERGFIPY 311
CRE + GM ER +PY
Sbjct: 388 --CREGRF--EEARGMLER--LPY 405
>gi|125592049|gb|EAZ32399.1| hypothetical protein OsJ_16610 [Oryza sativa Japonica Group]
Length = 422
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 77/182 (42%), Gaps = 1/182 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
QS ++ M+S G HPD N V+ LC + + + VPD +YS
Sbjct: 95 QSADALISSMRSTGCHPDVVFYNIYVNGLCKVGDFDAVQRTIDESGRNGWVPDAVTYSTY 154
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + +A+ + E+++ MGL P + + + + +MW E++E + G
Sbjct: 155 IAGLCRFGYVEEALRQL-EIMVTMGLQPTVVGLNILLDYVAQDLDMWAGKEVLERCQELG 213
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ Y V++ + R+++ K + ++ P ++ + L G+++ A
Sbjct: 214 FVVDVVTYNTVMDHFCKKRKWLRVLKLFTDLLKKPITPNVQTCNIFISCLCRAGKFQFAK 273
Query: 333 VV 334
V
Sbjct: 274 FV 275
>gi|115461420|ref|NP_001054310.1| Os04g0684500 [Oryza sativa Japonica Group]
gi|113565881|dbj|BAF16224.1| Os04g0684500 [Oryza sativa Japonica Group]
Length = 901
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L RSGCVP L L R+ + Q +L +M G P+ T ++
Sbjct: 563 ALDTLDLMRRSGCVPTVMTYNALIHG-LVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIM 621
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A + +A + + + D+ Y ++ A + + A+ + +EM
Sbjct: 622 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQK-- 679
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++ G P Y + C + + A
Sbjct: 680 IPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAE 739
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGV 325
K + M + G P +K +++G A V
Sbjct: 740 KVIEEMVDVGLKPNVKTYTTLIKGWARV 767
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
LH A AI + LRSG P I LL A+ + +++ IL +M+ P
Sbjct: 487 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAIC-ILEKMQKERMQPSNR 545
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ + A L M + CVP + +Y+ +I + K AV ++ +M
Sbjct: 546 AFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKM 605
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ G+ P + + A+ ++ KA E ++ G + YE ++ C
Sbjct: 606 SI-AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 659
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR D++ +MK G P+ T +++ C + A KV++ M
Sbjct: 689 ILIDGWA-RRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 747
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
P++++Y+ +I + + A++ +EM L GL P +
Sbjct: 748 VGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKL-AGLKPDEA 790
>gi|299471526|emb|CBN80012.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 732
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/334 (19%), Positives = 130/334 (38%), Gaps = 38/334 (11%)
Query: 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLR 93
L+ T+R A D+++ ++L +E P+ ++ S + + +E +
Sbjct: 154 LKATLREAKQYGDWRKALDVLDRMQEQGVKPDSQNYSSAIAACGNARQWERAVELLASMA 213
Query: 94 PRSRPKIAYDYLLSYTL-QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
R P Y + + A+ +L+ G P + SA + Q
Sbjct: 214 ARGTPPDVLTYSSAIAACAKVSRWKEAVGLLRSMKGQGVKPNVIVYSAAISA-CRKGGQW 272
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ D+L EM ++G PD T + ++ + Q A ++L M + V ++ +YSIV
Sbjct: 273 ETAVDLLKEMPAVGLAPDVITYSTVIDACAKRGQWEPAFRLLMEMPTKGVVANIITYSIV 332
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALR------ 253
IGA + + +AV +++EM N G+ P ++G + LR
Sbjct: 333 IGACAKWGQWEEAVALLREMQEN-GVAPDVITYSSTISACAKKGQWEEAVGLLREMPMEG 391
Query: 254 ---------------ANREMWK-AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
A R W+ A+++++ ++ G P Y ++ C + + A
Sbjct: 392 VTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQAL 451
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ M G P + ++ A G K+A
Sbjct: 452 WLLREMPATGLTPNVISYNSAIDACAKTGRSKIA 485
Score = 44.7 bits (104), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/182 (20%), Positives = 79/182 (43%), Gaps = 1/182 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+R + + D+L EM++ G PD + + + + +A +L+ M + P++
Sbjct: 408 KRGRWREAIDLLQEMQAHGVPPDVINYSAAIDACAQASRWEQALWLLREMPATGLTPNVI 467
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
SY+ I A + ++ AVE+++EM + GL P V A+ R+ +A+++
Sbjct: 468 SYNSAIDACAKTGRSKIAVELLREMPAH-GLAPDVITYSAVIASCAMGRQWEEALDLFRE 526
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++R+G + C + + A + M G +P + ++ A
Sbjct: 527 MQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYRTAIDACAKGDR 586
Query: 328 WK 329
WK
Sbjct: 587 WK 588
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 74/185 (40%), Gaps = 3/185 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + D+ EM+ G PD +CN +++ EA VL M + VPD SY
Sbjct: 516 QWEEALDLFREMQRQGITPDVVSCNTAINACAQGGWWEEALDVLGEMPTMGLVPDAISYR 575
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLE 269
I A + + + +++++EM +GL P + + A + + +WK A+ ++ +
Sbjct: 576 TAIDACAKGDRWKEIIDLLREMS-TVGLTP-DAISYRFAMSACSVDGLWKEALVLLRDML 633
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
G Y + C + + A + M G P + ++ +W
Sbjct: 634 AVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACGNGDQWG 693
Query: 330 LATVV 334
A V
Sbjct: 694 TAVEV 698
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 7/187 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ Q + +L EM G P+ + ++S+ + EA +L+ M + PD+
Sbjct: 373 KKGQWEEAVGLLREMPMEGVTPNAISYGIVISACAKRGRWREAIDLLQEMQAHGVPPDVI 432
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK---AVEM 264
+YS I A + A + A+ +++EM GL P VI +A+ A + + AVE+
Sbjct: 433 NYSAAIDACAQASRWEQALWLLREMPAT-GLTPN---VISYNSAIDACAKTGRSKIAVEL 488
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+ + G Y V+ C R++ A M +G P + + A
Sbjct: 489 LREMPAHGLAPDVITYSAVIASCAMGRQWEEALDLFREMQRQGITPDVVSCNTAINACAQ 548
Query: 325 VGEWKLA 331
G W+ A
Sbjct: 549 GGWWEEA 555
Score = 37.7 bits (86), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 43/85 (50%), Gaps = 1/85 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M ++G PD T N +++ + EA +L+ M + PD+ S++ I A
Sbjct: 628 LLRDMLAVGLSPDVVTYNSAINACAKGGRWKEATVLLRQMPTFGLAPDVNSFNAAIDACG 687
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQ 242
+ AVE++ EM +G+ P +
Sbjct: 688 NGDQWGTAVEVLFEM-RALGVSPNE 711
>gi|90399139|emb|CAJ86163.1| H0913C04.4 [Oryza sativa Indica Group]
gi|125550286|gb|EAY96108.1| hypothetical protein OsI_17985 [Oryza sativa Indica Group]
Length = 900
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L RSGCVP L L R+ + Q +L +M G P+ T ++
Sbjct: 562 ALDTLDLMRRSGCVPTVMTYNALIHG-LVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIM 620
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A + +A + + + D+ Y ++ A + + A+ + +EM
Sbjct: 621 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQK-- 678
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++ G P Y + C + + A
Sbjct: 679 IPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAE 738
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGV 325
K + M + G P +K +++G A V
Sbjct: 739 KVIEEMVDVGLKPNVKTYTTLIKGWARV 766
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
LH A AI + LRSG P I LL A+ + +++ IL +M+ P
Sbjct: 486 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAIC-ILEKMQKERMQPSNR 544
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ + A L M + CVP + +Y+ +I + K AV ++ +M
Sbjct: 545 AFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKM 604
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ G+ P + + A+ ++ KA E ++ G + YE ++ C
Sbjct: 605 SI-AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 658
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR D++ +MK G P+ T +++ C + A KV++ M
Sbjct: 688 ILIDGWA-RRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 746
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
P++++Y+ +I + + A++ +EM L GL P +
Sbjct: 747 VGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKL-AGLKPDEA 789
>gi|388516039|gb|AFK46081.1| unknown [Lotus japonicus]
Length = 327
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/180 (30%), Positives = 83/180 (46%), Gaps = 10/180 (5%)
Query: 53 LLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSY 108
LL +E P+ +S+ ++ F + R+ + E LES I P I Y+ +LS
Sbjct: 152 LLKVMKEQGLTPDAYSYDPLIAAFCKESRVDLAIEFLESMI--SDGCLPDIVNYNTILS- 208
Query: 109 TLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY 167
TL AL I ++ GC P V L S+ W ++LEM S
Sbjct: 209 TLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSALW--SSGHKIRALGMILEMLSKDI 266
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N L+S LC + +A ++L M S+ P + SY+IV+ +S + +DA+E
Sbjct: 267 DPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPSVISYNIVLLGLSKVHRISDAIE 326
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 1/150 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T + L+SSLC ++ EA +LK M PD SY +I A
Sbjct: 120 DMLSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYDPLIAAFCKES 179
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + A+E ++ M+ + G +P + + L N + +A+++ E L GCP Y
Sbjct: 180 RVDLAIEFLESMISD-GCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSY 238
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ I A ++ M + P
Sbjct: 239 NTLFSALWSSGHKIRALGMILEMLSKDIDP 268
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 53/241 (21%), Positives = 104/241 (43%), Gaps = 25/241 (10%)
Query: 104 YLLSYTLQSLHPLPLAL--AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
+ L +TLQ +P+ L +++ T+ G V V +L E
Sbjct: 11 HTLPFTLQQTNPISLVTYTILIEATILKGGV--------------------DDVMKLLDE 50
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G PD N +V +C + A + ++ +S+ PD+ SYSI++ + RK
Sbjct: 51 MIESGLRPDMFIFNAVVGGMCREGLVDRAFEFIRYISAKGYAPDVISYSILLRGLLNQRK 110
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGY 280
D ++M +M L+ G P + ++L + ++ +AV +++ ++ +G P +
Sbjct: 111 WEDGEKLMSDM-LSKGCEPNVVTYSILISSLCRDGKVEEAVSLLKVMKEQGLTPDAYSYD 169
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ C E R LA + + M G +P I ++ L G+ A + ++ E
Sbjct: 170 PLIAAFCKESR-VDLAIEFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGE 228
Query: 341 L 341
+
Sbjct: 229 V 229
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ L M S G PD N ++S+LC + EA K+ + + C P++ SY+ + A+
Sbjct: 186 EFLESMISDGCLPDIVNYNTILSTLCKNGKADEALKIFEKLGEVGCPPNVSSYNTLFSAL 245
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++ A+ M+ EM L+ + P + + + L + + +A+E++ +E
Sbjct: 246 WSSGHKIRALGMILEM-LSKDIDPDEITYNSLISCLCRDAMVDQAIELLVDMESSVYQPS 304
Query: 277 FQGYEVVVEG 286
Y +V+ G
Sbjct: 305 VISYNIVLLG 314
>gi|357130059|ref|XP_003566674.1| PREDICTED: protein Rf1, mitochondrial-like [Brachypodium
distachyon]
Length = 833
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 63/253 (24%), Positives = 108/253 (42%), Gaps = 22/253 (8%)
Query: 93 RPRSRPKIA------YDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAW 145
R +RP++A Y+ L+ ++ P + A+ R L++G + V +LL +
Sbjct: 107 REEARPRVALPTVCTYNILMDCCCRTRRP-TVGFALFGRFLKTGLKMDVIVASILLKCLY 165
Query: 146 LERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSAEC 202
+R S V ++LL M +G PD + N +V +LC + A +L M S C
Sbjct: 166 HAKR--SDDVVNLLLHRMPELGVEPDTISYNTVVKTLCEDSRSQRALDLLHTMVKKSGGC 223
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P++ +Y+ VI + + + A + EM + G++P + AL R M KA
Sbjct: 224 SPNVVTYNTVIHGLFREGEVSKACNLFHEM-MQQGVVPDVVTYTSIIDALCKARAMDKA- 281
Query: 263 EMIEFLERKGCPIGFQ----GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
E + R+ GFQ Y ++ G ++ MT +G +P I
Sbjct: 282 ---ELVLRQMISNGFQPNKVTYNCMIHGYSISGQWKETAGMFREMTSQGLMPNIVTCNSY 338
Query: 319 VEGLAGVGEWKLA 331
+ L G+ K A
Sbjct: 339 MSSLCKHGKSKEA 351
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + A + EM S G P+ TCN +SSLC + EAA+ M++ P+L +YS
Sbjct: 312 QWKETAGMFREMTSQGLMPNIVTCNSYMSSLCKHGKSKEAAEFFDSMAAKGHKPNLVTYS 371
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+++ +T D + + M N G++ Q
Sbjct: 372 VLLHGYATEGCFVDMLNLFNSMEGN-GIVADQ 402
Score = 41.2 bits (95), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/110 (26%), Positives = 52/110 (47%), Gaps = 4/110 (3%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
+P+ ++ ++ + C+ V DI + IG PD T N L+ + ++ +A
Sbjct: 503 IPRPNIVFFNSIINSLCKEGRVVEAHDIFDFVIHIGERPDVITFNSLIDGYGLVGKIEKA 562
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
VL M SA PD+ SY+ +I + +D + + EM L+ G+ P
Sbjct: 563 FGVLDAMISAGIEPDVVSYNTLIDGYCRNGRIDDGLILFGEM-LSKGVKP 611
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/141 (24%), Positives = 61/141 (43%), Gaps = 1/141 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + ++ EM G PD T ++ +LC + +A VL+ M S P+
Sbjct: 237 LFREGEVSKACNLFHEMMQQGVVPDVVTYTSIIDALCKARAMDKAELVLRQMISNGFQPN 296
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y+ +I S + + + M +EM + GLMP ++L + + +A E
Sbjct: 297 KVTYNCMIHGYSISGQWKETAGMFREMT-SQGLMPNIVTCNSYMSSLCKHGKSKEAAEFF 355
Query: 266 EFLERKGCPIGFQGYEVVVEG 286
+ + KG Y V++ G
Sbjct: 356 DSMAAKGHKPNLVTYSVLLHG 376
>gi|255660956|gb|ACU25647.1| pentatricopeptide repeat-containing protein [Verbena bracteata]
Length = 376
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|255546727|ref|XP_002514422.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223546418|gb|EEF47918.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 809
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 6/174 (3%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L L L ++ + +++ CV + I LS + + VA+ E K +G D
Sbjct: 341 LKALALHDEMVSKGVKTNCVILSSILQGLSQMGM-----ASEVANQFKEFKKMGIFFDEA 395
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N ++ +LC + ++ EA ++L M + VPD+ +Y+ VI K DA+ + +EM
Sbjct: 396 CYNVVMDALCKLGKVEEAVELLVEMKGKKMVPDIINYTTVISGYFLKGKVVDALNIYREM 455
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++G P +A N +A+ ++ ++E +G + +++EG
Sbjct: 456 K-DIGHKPDIVTYNVLAGGFSRNGLTQEALSLLNYMETQGVKPDTVTHNMIIEG 508
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 74/173 (42%), Gaps = 5/173 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+LL+ K G+ P +CN+L++ L ++ A + + + + P+ +Y+I I
Sbjct: 170 DVLLQTKHCGFAPQILSCNFLMNRLVESRKVDMAIAIYRQLKAFGLNPNDYTYTIAIKGF 229
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+A+++ ++M G+ P L + ++++ + P+
Sbjct: 230 CRKGNLAEAIDVFRDME-ESGVTPNSFSYTTFIEGLCLHGRSDLGFKVLQDVINAKIPMD 288
Query: 277 FQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y VV+ G C E L A + M ++GF P + V ++ G VG
Sbjct: 289 VFAYTVVIRGF--CSEMKLKEAESILREMEKQGFAPDVYVYCALISGYCMVGN 339
>gi|357139229|ref|XP_003571186.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Brachypodium distachyon]
Length = 628
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 110/278 (39%), Gaps = 7/278 (2%)
Query: 54 LGSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPK-IAYDYLLSY 108
LG FEE P+ F++ + DE F +R RP + + ++++
Sbjct: 281 LGLFEEMRHQYCRPDVFTYTELIRGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINF 340
Query: 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L L A+ + + C+P + A E + + ++ MK G
Sbjct: 341 -LGKAGRLDDAVKLFEEMGTLQCIPSVVTYNTIIKALFESKSRISEISSWFERMKGSGIS 399
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T + L+ C ++ +A +L+ M P +Y +I A+ A++ + A E+
Sbjct: 400 PSPFTYSILIDGFCKTNRTEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDIAHEL 459
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+E+ N G + + + +A R + AV + + + + GC Y ++ G
Sbjct: 460 FQELKENCGSSSARVYAVMIKHLGKAGR-LDDAVNLFDEMNKLGCTPNVYAYNALMSGLA 518
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A T+ M E G IP I ++ GLA G
Sbjct: 519 RAGMLDEALTTMRRMQEHGCIPDINSYNIILNGLAKTG 556
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/222 (22%), Positives = 97/222 (43%), Gaps = 19/222 (8%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEE---ACQNPNPFSF---LSNFP 74
+ +L+ + S+ T ++A ++K +I E+ FE + +P+PF++ + F
Sbjct: 356 EMGTLQCIPSVVTYNTIIKALFESK--SRISEISSWFERMKGSGISPSPFTYSILIDGFC 413
Query: 75 QNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
+ +R + +++EM E P P AY L+ L +A + Q L+
Sbjct: 414 KTNRTEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDIAHELFQE-LKEN 466
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
C + L + + ++ EM +G P+ N L+S L L EA
Sbjct: 467 CGSSSARVYAVMIKHLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMSGLARAGMLDEA 526
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ M C+PD+ SY+I++ ++ + A+EM+ M
Sbjct: 527 LTTMRRMQEHGCIPDINSYNIILNGLAKTGGPHRAMEMLSNM 568
Score = 39.7 bits (91), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 47/206 (22%), Positives = 83/206 (40%), Gaps = 18/206 (8%)
Query: 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
F PC + SL + A AK Y EL +E C + + +
Sbjct: 433 FPPCPAAYCSL------------IDALGKAKRYDIAHELFQELKENCGSSSARVYAVMIK 480
Query: 75 QNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+ +D+ + F + P + AY+ L+S L L AL ++R GC+
Sbjct: 481 HLGKAGRLDDAVNLFDEMNKLGCTPNVYAYNALMS-GLARAGMLDEALTTMRRMQEHGCI 539
Query: 133 P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P + ++L+ L + ++L MK PD + N ++ ++ EAA
Sbjct: 540 PDINSYNIILNG--LAKTGGPHRAMEMLSNMKQSAIKPDAVSYNTVLGAMSHAGLFEEAA 597
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMS 217
K++K M+ DL +YS ++ A+
Sbjct: 598 KLMKEMNVLGFEYDLITYSSILEAIG 623
Score = 37.7 bits (86), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 91/227 (40%), Gaps = 10/227 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +G P +I +L + + + + EM+ PD T L+
Sbjct: 245 AIRLLNEMKDNGMQPTAKIYTMLIALFFKLN-NVHGALGLFEEMRHQYCRPDVFTYTELI 303
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L + EA M C PD + +I + A + +DAV++ +EM +
Sbjct: 304 RGLGKAGRFDEAYNFFHEMRREGCRPDTVVINNMINFLGKAGRLDDAVKLFEEMG-TLQC 362
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQ--GYEVVVEGCLECREYIL 295
+P + AL ++ + E+ + ER KG I Y ++++G +
Sbjct: 363 IPSVVTYNTIIKALFESKS--RISEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEK 420
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
A + M E+GF P +++ L G+ K + + F ELK
Sbjct: 421 AMMLLEEMDEKGFPPCPAAYCSLIDAL---GKAKRYDIAHELFQELK 464
>gi|148907853|gb|ABR17050.1| unknown [Picea sitchensis]
gi|224284228|gb|ACN39850.1| unknown [Picea sitchensis]
Length = 420
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 3/172 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIG 214
DIL EM+ G P+ T L+ LC ++ A VLK M EC P++ +Y+ +I
Sbjct: 182 DILDEMEHRGITPNTVTYTALIQGLCDCGEVERAILVLKEMKLRGNECCPNVVTYTQLIH 241
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ +E + EM+++ G P + L +A ++ + GC
Sbjct: 242 GLCQKGLFEMGMEFLDEMIIS-GCFPNNATYTALIHGLCQKGSFLEAAVLLNEMVAIGCE 300
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y +++G + E A + + M E+G P + +++GL G
Sbjct: 301 LDVVIYNSLIDGLCKMGELDFAREMQILMVEKGVAPDVFTYTSLIQGLCDAG 352
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI----GYHPDCGTC 174
A +L + GC ++ +++ ++ ++ C+ + D EM+ + G PD T
Sbjct: 287 AAVLLNEMVAIGC----ELDVVIYNSLIDGLCKMGEL-DFAREMQILMVEKGVAPDVFTY 341
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ LC L EA +++ M + VP+ +Y+ +I + A +T+ A++++ EM
Sbjct: 342 TSLIQGLCDAGLLDEALGLMQEMRAKGIVPNSVTYTTLINGFTQADRTDHALQLVNEMKS 401
Query: 235 NMGLMP 240
N GLMP
Sbjct: 402 N-GLMP 406
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 83/190 (43%), Gaps = 5/190 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ Q +I EM+ G PD T N L++ LC QL ++ M + P +
Sbjct: 103 KKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQARGFSPTVV 162
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I TA + + A++++ EM + G+ P + L E+ +A+ +++
Sbjct: 163 TYTTLIHGFCTAGRVDAAMDILDEME-HRGITPNTVTYTALIQGLCDCGEVERAILVLKE 221
Query: 268 LERKG---CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ +G CP Y ++ G + + + + + M G P ++ GL
Sbjct: 222 MKLRGNECCP-NVVTYTQLIHGLCQKGLFEMGMEFLDEMIISGCFPNNATYTALIHGLCQ 280
Query: 325 VGEWKLATVV 334
G + A V+
Sbjct: 281 KGSFLEAAVL 290
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/156 (20%), Positives = 65/156 (41%), Gaps = 3/156 (1%)
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ LC Q+ EA ++ + M PD +Y+I+I + + V +M EM G
Sbjct: 98 INGLCKKGQIAEAMEIFREMEEKGSAPDSFTYNILINGLCKDAQLEMGVSLMDEMQAR-G 156
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + + A+++++ +E +G Y +++G +C E A
Sbjct: 157 FSPTVVTYTTLIHGFCTAGRVDAAMDILDEMEHRGITPNTVTYTALIQGLCDCGEVERAI 216
Query: 298 KTVMGMTERGF--IPYIKVRQKVVEGLAGVGEWKLA 331
+ M RG P + +++ GL G +++
Sbjct: 217 LVLKEMKLRGNECCPNVVTYTQLIHGLCQKGLFEMG 252
>gi|334183628|ref|NP_001185309.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
gi|193806276|sp|P0C7R3.1|PP106_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g64583, mitochondrial; Flags: Precursor
gi|332196135|gb|AEE34256.1| tetratricopeptide repeat-like protein [Arabidopsis thaliana]
Length = 512
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM+ G D T N L++ LC + +AA++L+ M PD+ +++ +I
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++A E+ KEM+ + + P + L + ++ A + + + KGC
Sbjct: 257 VKQGNLDEAQELYKEMIQS-SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + R K M+ GF I ++ G VG+ ++A
Sbjct: 316 VVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVA 370
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 12/212 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD----ILLEMKSIGYHPDC 171
L AL++L + ++ G P ++ + L C + D ++L +KS GY P+
Sbjct: 122 LSFALSVLGKMMKLGYEP----SIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNV 176
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
N L+ LC +L A ++L M D+ +Y+ ++ + + + +DA M+++
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLEC 290
M + + P + + +A E+ + + + Y ++ G C+
Sbjct: 237 M-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R Y A KT M +G P + ++ G
Sbjct: 296 RLYD-AKKTFDLMASKGCFPNVVTYNTLISGF 326
>gi|255571081|ref|XP_002526491.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223534166|gb|EEF35882.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 884
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 1/89 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S D EM IG PD T N L+ C + +V A + L M ++ PD+ +Y+I
Sbjct: 680 KSAFDAFAEMHHIGVTPDTVTYNTLIGGYCKVLDMVSADEFLNKMYASGWDPDITTYNIR 739
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
I +++K + AV M+ E++ +G++P
Sbjct: 740 IQGFCSSQKISRAVTMLDELIA-VGVVPN 767
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/158 (24%), Positives = 70/158 (44%), Gaps = 1/158 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PDC + V+ LC QL EA + L+ M P + +++ VI A S A ++A +
Sbjct: 451 PDCSLYDVSVAGLCWAGQLDEAMQFLEDMLEKGMPPSVVAFNSVIAAYSRAGFEDNAHKA 510
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
K M++ GL+P + L + +A +++ + KG P+ + V+++G
Sbjct: 511 YKIMLM-FGLVPSSSTCSSMLLGLSKKGRLQEARDLLYKMIDKGLPVNKVAFTVLLDGYF 569
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + A M RG P ++GL+ G
Sbjct: 570 KVGDTAGAHSLWYEMEARGICPDAIAFSAFIDGLSKAG 607
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 54/231 (23%), Positives = 86/231 (37%), Gaps = 22/231 (9%)
Query: 119 ALAILQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
+L IL R G P RLLL R SV +L M G P
Sbjct: 227 SLEILSRMREVGVRPSSSAISILFRLLL------RVGDYGSVWKLLRGMIRDGPRPCNHN 280
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N ++ C L A +L M C PD+ +Y+I+I A +T+DA+ + M+
Sbjct: 281 FNIMILCFCQKGYLRVAESLLFVMPKFCCEPDVYAYNILINAYRIRGRTSDALGFLHLMI 340
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
N G P + A + +A ++ E ++ G Y ++ G + R+
Sbjct: 341 KN-GCKPSLITFSTIITAFCNEGNVVEARKIFEGIQEVGLSPNVAMYNTLMSGYFKARDV 399
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG----------EWKLATVV 334
A M ++G P +V G G +W L+++V
Sbjct: 400 CQANMLYEEMRDKGIAPDGATFNILVAGNYKYGKEADSYELFRDWSLSSLV 450
>gi|297741319|emb|CBI32450.3| unnamed protein product [Vitis vinifera]
Length = 851
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 101/235 (42%), Gaps = 12/235 (5%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
+R R P + +L S+ L L R+GC+P ++ + ++ C+
Sbjct: 2 IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLP----NVVTYNTLIDAYCK 57
Query: 152 SQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + +L M S G P+ + N +++ LC + EA ++L+ M PD +
Sbjct: 58 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 117
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ + A+ + EMV N G+ P + ++ R + +A+E + +
Sbjct: 118 YNTLLNGYCKEGNFHQALVIHAEMVRN-GVSPSVVTYTALINSMCKARNLNRAMEFFDQM 176
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
+G + Y +++G R+ +L A + + MTE GF P + + G
Sbjct: 177 RIRGLRPNERTYTTLIDGF--SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 229
Score = 44.7 bits (104), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G+ P T N + C ++++ EA V++ M PD+ SYS +I
Sbjct: 207 ILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 266
Query: 218 TARKTNDAVEMMKEMV 233
+ + A +M +EMV
Sbjct: 267 RKGELDRAFQMKQEMV 282
>gi|218196744|gb|EEC79171.1| hypothetical protein OsI_19856 [Oryza sativa Indica Group]
Length = 633
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 8/211 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L L GC P + A+ C + + +L M + G+ P T N
Sbjct: 272 ALGVLDLMLEEGCQPNAHTYTPIVHAY----CTGGRIHEAKRLLNTMIASGFAPSTATYN 327
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV +LC + E +L+ ++ PD+ +YS + + A + + + ++ +M+ N
Sbjct: 328 VLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGLCKAGRIDKSFALVDKMLSN 387
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL P + + + + + W A ++E G Y V+ + R ++
Sbjct: 388 -GLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDANVVNYNTVMRRLCDERRWLS 446
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
K M ++G P VV L +G
Sbjct: 447 VVKLFTDMAKKGIAPNSWTFNIVVHSLCKLG 477
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 62 QNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRP--RSRPKIAYDYLLSYTLQSLHPL 116
++P+P+ + +S D L +R R RP A ++ L S
Sbjct: 139 RSPHPYDYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRP 198
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
ALA+L G P +L + R + + +++ M + G PD T +
Sbjct: 199 GAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVANGVAPDVVTYST 258
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+S LC+ Q+ EA VL M C P+ +Y+ ++ A T + ++A ++ M+ +
Sbjct: 259 LISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIAS- 317
Query: 237 GLMP 240
G P
Sbjct: 318 GFAP 321
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 41/199 (20%), Positives = 85/199 (42%), Gaps = 3/199 (1%)
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSI-GYHPDCGTCNYLVSSLCAIDQLVEAA 191
P RL+ + A + +L EM+++ PD + ++L + + A
Sbjct: 143 PYDYNRLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAAL 202
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTA-RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
VL M++ PD + ++++G + R+ + A E+++ MV N G+ P + +
Sbjct: 203 AVLDAMAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVAN-GVAPDVVTYSTLIS 261
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
L + ++ +A+ +++ + +GC Y +V A + + M GF P
Sbjct: 262 GLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAP 321
Query: 311 YIKVRQKVVEGLAGVGEWK 329
+VE L VG ++
Sbjct: 322 STATYNVLVEALCKVGAFE 340
>gi|125592120|gb|EAZ32470.1| hypothetical protein OsJ_16686 [Oryza sativa Japonica Group]
Length = 879
Score = 53.5 bits (127), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/208 (21%), Positives = 86/208 (41%), Gaps = 4/208 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L RSGCVP L L R+ + Q +L +M G P+ T ++
Sbjct: 541 ALDTLDLMRRSGCVPTVMTYNALIHG-LVRKHKVQRAVSVLDKMSIAGITPNEHTYTIIM 599
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A + +A + + + D+ Y ++ A + + A+ + +EM
Sbjct: 600 RGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRACCKSGRMQSALAVTREMSFQK-- 657
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++ G P Y + C + + A
Sbjct: 658 IPRNTFIYNILIDGWARRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAE 717
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGV 325
K + M + G P +K +++G A V
Sbjct: 718 KVIEEMVDVGLKPNVKTYTTLIKGWARV 745
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 72/175 (41%), Gaps = 2/175 (1%)
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
LH A AI + LRSG P I LL A+ + +++ IL +M+ P
Sbjct: 465 LHDFANAFAIFEEMLRSGLQPDRAIYNLLIEAFCKMGNMDRAIC-ILEKMQKERMQPSNR 523
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ + A L M + CVP + +Y+ +I + K AV ++ +M
Sbjct: 524 AFRPIIEGYAVAGDMKSALDTLDLMRRSGCVPTVMTYNALIHGLVRKHKVQRAVSVLDKM 583
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ G+ P + + A+ ++ KA E ++ G + YE ++ C
Sbjct: 584 SI-AGITPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYETLLRAC 637
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 2/104 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR D++ +MK G P+ T +++ C + A KV++ M
Sbjct: 667 ILIDGWA-RRGDVWEAEDLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAEKVIEEMVD 725
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
P++++Y+ +I + + A++ +EM L GL P +
Sbjct: 726 VGLKPNVKTYTTLIKGWARVSLPDRALKCFEEMKL-AGLKPDEA 768
>gi|297604045|ref|NP_001054898.2| Os05g0207200 [Oryza sativa Japonica Group]
gi|218196267|gb|EEC78694.1| hypothetical protein OsI_18845 [Oryza sativa Indica Group]
gi|222630569|gb|EEE62701.1| hypothetical protein OsJ_17504 [Oryza sativa Japonica Group]
gi|255676129|dbj|BAF16812.2| Os05g0207200 [Oryza sativa Japonica Group]
Length = 467
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 61/241 (25%), Positives = 101/241 (41%), Gaps = 5/241 (2%)
Query: 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
P R A + LL L PLP +L SG P +L A +
Sbjct: 117 PAPRTARALNTLLHALLACRAPLP---ELLSECRGSGIHPDACTYNILMRAAVADSGSVD 173
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIV 212
+ + EM G P T LV++ C +L EA KV + MS + P+ Y+ +
Sbjct: 174 NACLLFDEMLQRGIAPTVVTFGTLVTAFCEAGRLEEAFKVKEVMSLQYNIRPNAHVYASL 233
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ A+ K +DA + +EMV N + G +A AL + + V ++E ++ KG
Sbjct: 234 MKALCEKGKVDDAHRLKEEMVSNSEPLVDSGAYATLARALFRLGKKGEVVSLLEEMKEKG 293
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+G + + ++ G C + + A + M + G P +V GL +G W+ A
Sbjct: 294 IKVGREVHNSMIAGFCEDEGDLDAAFAALDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDA 353
Query: 332 T 332
+
Sbjct: 354 S 354
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M+ G PD + N LV LC + + +A+++++ M C PD+ +Y + +
Sbjct: 322 LDDMQKGGCKPDSVSYNTLVGGLCKMGRWRDASELVEDMPRRGCRPDVVTYRRLFDGICD 381
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
A ++A + EMV G P + V K A
Sbjct: 382 AGGFSEARRVFNEMVFK-GFAPSKDGVRKFVA 412
>gi|168014206|ref|XP_001759643.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162689182|gb|EDQ75555.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 1043
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/205 (25%), Positives = 90/205 (43%), Gaps = 9/205 (4%)
Query: 56 SFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSL 113
S + C PN + S + ++D LE F ++ R P + Y+ LLS L
Sbjct: 834 SISKGC-TPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPNIVTYNNLLS-GLAKA 891
Query: 114 HPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
L +A +L+ + GCVP + +L+ + MK G PD
Sbjct: 892 GRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVG--KMGMVDEAESYFKRMKEKGIVPDVI 949
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ SL +D+L+EA ++ M P + +Y+++I + A K ++A + EM
Sbjct: 950 TFTSLIESLGKVDKLLEACELFDSMEEEGYNPSVVTYNVLIDILGRAGKVHEAAMIFHEM 1009
Query: 233 VLNMGLMPRQGMVIKVAAALRANRE 257
+ G MP G+ I + + + RE
Sbjct: 1010 KVK-GCMP-DGITIGIMKRILSVRE 1032
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 81/184 (44%), Gaps = 1/184 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ +M G+ PD L+ L +L A + + M+ CVPD+ +YS +I ++
Sbjct: 759 NMFTKMTEEGHEPDVVAYTSLMDVLGKGGKLSHALIIFRAMAKKRCVPDVVTYSSLIDSL 818
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +A E ++ G P G+ + + + +A+E+ E ++R+ CP
Sbjct: 819 GKEGRVEEAYYFF-ENSISKGCTPNVGVYSSLIDSFGKKGMVDRALELFEEMQRRQCPPN 877
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y ++ G + +A K + M + G +P + +++G+ +G A +
Sbjct: 878 IVTYNNLLSGLAKAGRLNVAEKLLEEMEKVGCVPDLVTYNILIDGVGKMGMVDEAESYFK 937
Query: 337 RFAE 340
R E
Sbjct: 938 RMKE 941
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 76/160 (47%), Gaps = 6/160 (3%)
Query: 156 ADILLEMKSIGYHPDCG--TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
AD +E S+G+ G T N L+S+ + EA K+L+ M EC+P + +Y+ ++
Sbjct: 512 ADRTVEYPSLGFKS-LGEITYNTLMSAFIHNGHVDEAVKLLEVMKKHECIPTVVTYTTLV 570
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ A + ++AV +++EM G P + A+ + +++ + + + RKGC
Sbjct: 571 DGLGKAGRLDEAVSLLREME-KQGCEPSVVTYSSLMASFYKRDQEEESLSLFDEMVRKGC 629
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYI 312
Y +V+ CL + + V G M E G P +
Sbjct: 630 VADVSTYSLVIN-CLCKSDDVDQALDVFGRMKEEGMEPLL 668
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 34/158 (21%), Positives = 70/158 (44%), Gaps = 10/158 (6%)
Query: 119 ALAILQRTLRSGCV-PVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTC 174
+L++ +R GCV V L+++ C+S V D+ MK G P G
Sbjct: 617 SLSLFDEMVRKGCVADVSTYSLVINCL-----CKSDDVDQALDVFGRMKEEGMEPLLGNY 671
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+SSL +++ A ++ + + VPD Y+I++ + + + ++A +++ M
Sbjct: 672 KTLLSSLVKDEKIDFALQIFNELQESSLVPDTFVYNIMVNGLVKSNRVDEACKLVDSMK- 730
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
N ++P + L + + +A M + +G
Sbjct: 731 NQNILPDLFTYTSLLDGLGKSGRLEEAFNMFTKMTEEG 768
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 2/99 (2%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
R+ + S R + A+ + EM G P T L+ +L + EA K G
Sbjct: 290 FRIFVHS--FNRSGRLDPAAEPIQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACKFFNG 347
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
M + C P++ +Y+ ++ ++ A + +A E+ EM N
Sbjct: 348 MKNLRCSPNVVTYTTLVNGLAKAGRLEEACEVFVEMKEN 386
Score = 40.8 bits (94), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 62/146 (42%), Gaps = 15/146 (10%)
Query: 123 LQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
+Q ++SG P I L+ S ++ C+ MK++ P+ T L
Sbjct: 310 IQEMIKSGIDPGVHTFTVLIDALVKSGNIDEACK------FFNGMKNLRCSPNVVTYTTL 363
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
V+ L +L EA +V M C PD +Y+ +I + A + + A + KEM + G
Sbjct: 364 VNGLAKAGRLEEACEVFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMK-DRG 422
Query: 238 LMPR---QGMVIKVAAALRANREMWK 260
L+P ++I V E W+
Sbjct: 423 LVPNLRTYNIMISVLGKAGRQPEAWQ 448
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 70/168 (41%), Gaps = 12/168 (7%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L + LE C+ + +EMK PD N L+ L + A + K M
Sbjct: 367 LAKAGRLEEACE------VFVEMKENNCSPDAIAYNTLIDGLGKAGEADMACGLFKEMKD 420
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
VP+L +Y+I+I + A + +A ++ ++ G +P + L +M
Sbjct: 421 RGLVPNLRTYNIMISVLGKAGRQPEAWQLFHDLK-EQGAVPDVFTYNTLIDVLGKGGQMD 479
Query: 260 KAVEMI-EFLERKG-CPIGFQ---GYEVVVEGCLECREYILAGKTVMG 302
K + +I E +E+ G C I G+E +EG EY G +G
Sbjct: 480 KVLAIIKEMVEKGGECIISRDSNAGHEGTIEGADRTVEYPSLGFKSLG 527
>gi|255542538|ref|XP_002512332.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548293|gb|EEF49784.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 619
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/206 (28%), Positives = 105/206 (50%), Gaps = 22/206 (10%)
Query: 38 VRAAVDAKDYQQIPELLGS-FEEACQNP-NPFSFLSNFPQNHRIKVIDEMLESFIPLRPR 95
V AA +D++ + LL + C N N F F++N ++ + V+D+++++ L +
Sbjct: 334 VNAAGHERDFKTLHHLLNKRVRDHCFNTTNTFKFITN--TDNSLSVLDDLIQTLARL-DK 390
Query: 96 SRPKI-AYDYL------LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148
P++ AY+ L L +SLH + + +A Q L S C P +LSS L +
Sbjct: 391 GIPRMSAYNMLIARLCKLDRIQESLHIVHI-MADEQYGL-STCSFHP----ILSS--LTQ 442
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + + ++ M++IG PD NYL+++ C LV+A KV+K + D +
Sbjct: 443 KKKMEDSWKVIEMMRAIGVLPDLTAFNYLLTAYCYNGNLVDACKVMKRIEEEGLGADART 502
Query: 209 Y-SIVIGAMSTARKTNDAVEMMKEMV 233
Y ++V+GA T K A+ +++ MV
Sbjct: 503 YDALVLGACRTG-KVEAALVVLRRMV 527
>gi|115489040|ref|NP_001067007.1| Os12g0557800 [Oryza sativa Japonica Group]
gi|113649514|dbj|BAF30026.1| Os12g0557800 [Oryza sativa Japonica Group]
Length = 682
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +L+ + G +P ++ ++ ++ C + + D + EM G P+ T N
Sbjct: 473 AKVVLKMLMEHGFMP----DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 528
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC+ + +A +L M PD S++ +I + RK + A ++ +MV
Sbjct: 529 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMV-R 587
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYI 294
G++P + AL R + KA E++ ER GC Q Y +V + ++
Sbjct: 588 FGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFS 647
Query: 295 LAGK 298
AG+
Sbjct: 648 EAGE 651
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 22/240 (9%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M+I ++ +C++ L +SS+ + + V A + E++ ++
Sbjct: 389 MVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK 448
Query: 61 CQNPNPFSF------LSNFPQNHRIKVIDEML--ESFIPLRPRSRPKIAYDYLLSYTLQS 112
PN +F S H KV+ +ML F+P I + L+ L +
Sbjct: 449 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP------DIITFTSLID-GLCN 501
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
H L A + G P Q +L + C + V D+L +MK G P
Sbjct: 502 THQLDDAFVCFEEMAEWGVRPNAQTYNVL----MHTLCSAGHVNKAIDLLNKMKIDGVTP 557
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N L+ S C + ++ +A + M VPD +Y+ +I A+ R+ N A E++
Sbjct: 558 DAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 617
Score = 38.5 bits (88), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM+ G+ P+ T N L+S + + A VLK + +PD+ +++ +I +
Sbjct: 440 EIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGL 499
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +DA +EM G+ P + L + + KA++++ ++ G
Sbjct: 500 CNTHQLDDAFVCFEEMA-EWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPD 558
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ R+ A M G +P +++ L
Sbjct: 559 AYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 604
>gi|225462201|ref|XP_002269984.1| PREDICTED: pentatricopeptide repeat-containing protein At1g79080,
chloroplastic [Vitis vinifera]
gi|147852271|emb|CAN82234.1| hypothetical protein VITISV_038804 [Vitis vinifera]
Length = 567
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 1/121 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ + +L EM G+ PD T + L+ LC+ L EA ++ M C PD++
Sbjct: 423 RKGNTYPAFQLLYEMTKYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVD 482
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + RKT D M+ EM++ G MP + + + EM A +++
Sbjct: 483 NFNALILGLCKCRKT-DLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAVLKE 541
Query: 268 L 268
L
Sbjct: 542 L 542
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 76/167 (45%), Gaps = 2/167 (1%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
+P+ GT N ++ LC ++ EA +++ + + + + Y VI ++ T A +
Sbjct: 374 NPNEGTYN-AIAVLCEEGKVQEAFSIIQSLGNKQNSSTHDFYKGVISSLCRKGNTYPAFQ 432
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
++ EM G +P + L + + +A+E+ +E C + ++ G
Sbjct: 433 LLYEMT-KYGFVPDSYTYSSLIRGLCSEGMLDEAMEIFSIMEENYCRPDVDNFNALILGL 491
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+CR+ L+ M ++G++P +VEG+A E +LA V
Sbjct: 492 CKCRKTDLSLMVFEMMVKKGYMPNETTYTIIVEGIAHQEEMELAAAV 538
Score = 44.7 bits (104), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Query: 72 NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC 131
N P+ +++ D L + +P L Y L + + A +++ + SG
Sbjct: 69 NDPRTRDLRLNDAFLYLEYMIGKGHKPDGGQATQLMYELCKSNKMRKATKVMELMIGSGT 128
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P P L + L +R ++ +M+ GY + T N LV LC L ++
Sbjct: 129 TPDPASCTFLVNN-LCKRGNVGYAMQLVEKMEEYGYPTNTVTYNSLVRGLCMHGNLSQSL 187
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++L VP++ +YS ++ A R ++A+ ++ E+V G
Sbjct: 188 QILDKFMKKGLVPNVFTYSFLLEAAYKERGADEAIRLLDEIVAKGG 233
Score = 42.7 bits (99), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 60/115 (52%), Gaps = 3/115 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L + G P + +LL+ E R ++ ++ S G+ P+ + N L
Sbjct: 221 AIRLLDEIVAKGGKPNLVSYNVLLTGLCKEGR--TEEAMQFFRDLPSKGFSPNVVSYNIL 278
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ SLC + +A ++L M E P + +++I+IG+++ +T+ A+E++ +M
Sbjct: 279 LRSLCYEGRWEKAKELLAEMDGGERSPSIVTFNILIGSLALHGQTDQALEVLDDM 333
>gi|255660986|gb|ACU25662.1| pentatricopeptide repeat-containing protein [Glandularia subincana]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 74/156 (47%), Gaps = 3/156 (1%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P+ Y+ +I + A K DA+ + +EM M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMG-TM 193
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYIL 295
P + L N +A +++ L KG G Y ++++G CL+ +
Sbjct: 194 HCSPNIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HKVEK 252
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 253 ALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLA 288
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/198 (21%), Positives = 84/198 (42%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 133 SAMINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMGT 192
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P++ +Y+ +I + +A ++KE+ L+ GL P + L + ++
Sbjct: 193 MHCSPNIITYNTLINGLCKNEMFGEAYNLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVE 251
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
KA+++ + KG Q + V++ G + LA M P + ++
Sbjct: 252 KALQLWNQVTSKGFKPDVQMHNVLIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 311
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 312 EGFYKDGDIRNALVIWAR 329
>gi|147858101|emb|CAN78867.1| hypothetical protein VITISV_041982 [Vitis vinifera]
Length = 962
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Query: 156 ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A +L E M +G P T N L++ + AA++L M C PD +Y+ ++
Sbjct: 469 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 528
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
S K A +EMV GL P + + ++ A+ ++E +E GC
Sbjct: 529 GFSKWGKLESASFYFQEMV-ECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERMEEMGCN 587
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y V+ G + + A K M E+G +P + +++GL G + A
Sbjct: 588 PNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFA 644
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/173 (23%), Positives = 79/173 (45%), Gaps = 6/173 (3%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGT 173
+ +AL++L+R GC P V +++ E R +++ + D +M G P+ T
Sbjct: 571 VDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICD---KMAEQGLLPNVIT 627
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
L+ LC + A K+ M +C+P+L +YS +I + K ++A ++KEM
Sbjct: 628 YTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEME 687
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
GL P + + + A ++ + GC ++ Y V+++G
Sbjct: 688 -RKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDVGCKPNYRTYSVLLKG 739
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L LA + R ++ GC P + S + C V D+L EM G P
Sbjct: 291 LDLAFGVFDRMVKEGCDP----NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 346
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +++LCAI+ EA +++ M C P++++Y+ +I +S K A+ + +M
Sbjct: 347 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 406
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CL 288
L GL+P + L A+++ ++E G Q Y +++G CL
Sbjct: 407 -LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL 462
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 78/180 (43%), Gaps = 4/180 (2%)
Query: 114 HPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172
H + +++L R +R P IR+L+ A + + VAD L E+ +G+
Sbjct: 148 HNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEE-EIRRVADFLNEISGMGFGFSLY 206
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+CN L+ L + + A + K M ++ P L +++ +I +S K +A E++
Sbjct: 207 SCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSKKGKVREA-ELILSQ 265
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ L P + NR + A + + + ++GC Y ++ G C E R
Sbjct: 266 IFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSVTYSTLINGLCNEGR 325
Score = 44.3 bits (103), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 86/216 (39%), Gaps = 2/216 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + ++ L+ G +P L + +L + + A +L MK G PD T N LV
Sbjct: 469 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCEPDEWTYNELV 527
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S +L A+ + M P+ SY+ +I S K + A+ +++ M MG
Sbjct: 528 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTTLIDGHSKDGKVDIALSLLERME-EMGC 586
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L +A ++ + + +G Y +++G A K
Sbjct: 587 NPNVESYNAVINGLSKENRFSEAEKICDKMAEQGLLPNVITYTTLIDGLCRNGRTQFAFK 646
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M +R +P + ++ GL G+ A ++
Sbjct: 647 IFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEIL 682
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 44/223 (19%), Positives = 91/223 (40%), Gaps = 2/223 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L +GC P L S + + + +S + EM G +P+ + L+
Sbjct: 504 AARLLDLMKENGCEPDEWTYNELVSGF-SKWGKLESASFYFQEMVECGLNPNPVSYTTLI 562
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ A +L+ M C P++ESY+ VI +S + ++A ++ +M GL
Sbjct: 563 DGHSKDGKVDIALSLLERMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMA-EQGL 621
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + L N A ++ +E++ C Y ++ G + + A
Sbjct: 622 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEI 681
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ M +G P +++G +G A ++ +R ++
Sbjct: 682 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDV 724
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 84/195 (43%), Gaps = 29/195 (14%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
E+ + V+++L M IG P T + LVS LC + EA +++K M PD
Sbjct: 765 EKDVNFEIVSNLLARMSEIGCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDR 824
Query: 207 ESYSIVIGAMSTARKTNDAVEMM-----KEMVLNMGL-------MPRQGMVIKVAAALRA 254
E Y ++ A + + A+++ K L++ + + + G V + A AL
Sbjct: 825 EIYYSLLIAHCKNLEVDHALKIFHSIEAKGFQLHLSIYRALICALCKAGQV-EEAQALFD 883
Query: 255 N--REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
N + W A E++ + V+V+G L+ E L K + M + F P I
Sbjct: 884 NMLEKEWNADEIV--------------WTVLVDGLLKEGELDLCMKLLHIMESKNFTPNI 929
Query: 313 KVRQKVVEGLAGVGE 327
+ + L+ +G+
Sbjct: 930 QTYVILGRELSRIGK 944
>gi|357151724|ref|XP_003575883.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53700,
chloroplastic-like [Brachypodium distachyon]
Length = 757
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 81/173 (46%), Gaps = 19/173 (10%)
Query: 68 SFLSNFPQN----HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL---HPLPLAL 120
+F++ QN H +KV+ ML+ P + Y S + L L A
Sbjct: 306 TFVNGLCQNGHVDHALKVLGLMLQE------GCEPDV---YTYSTVINCLCNNGELEEAK 356
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
I+ + + SGC+P L+ + E Q + D+ E+ G P+ T N L++
Sbjct: 357 GIVNQMVDSGCLPDTTTFNTLIVALCTEN--QLEEALDLARELTVKGLSPNVYTFNILIN 414
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+LC + A ++ + M S+ C PD +Y+I+I + ++ K A++++KEM
Sbjct: 415 ALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILIDNLCSSGKLAKALDLLKEM 467
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 82/176 (46%), Gaps = 4/176 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
A+++ +M S G P+ T N +++ C + +AA +L+ M++ D+ +Y+ +
Sbjct: 528 DDAAELVDQMISEGLQPNNVTYNSILTHYCKQGNISKAADILQTMTANGFEVDVVTYATL 587
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERK 271
I + AR+T A+++++ M + G+ P V +L A+ + E E
Sbjct: 588 INGLCKARRTQAALKLLRGMRMK-GMKPTPKAYNPVIQSLFRGNNGRDALSLFREMTEVG 646
Query: 272 GCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G P F Y++V G C A ++ M + GFIP + + EGL +G
Sbjct: 647 GPPDAFT-YKIVFRGLCRGGGPIKEAFDFLVEMADNGFIPEFSSFRMLAEGLLNLG 701
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 81/170 (47%), Gaps = 8/170 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +Q+ + G P R+ S+ ++ CQ+ V +L M G PD T +
Sbjct: 285 ALGYIQQEIADGFEP---DRVTFST-FVNGLCQNGHVDHALKVLGLMLQEGCEPDVYTYS 340
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ LC +L EA ++ M + C+PD +++ +I A+ T + +A+++ +E+ +
Sbjct: 341 TVINCLCNNGELEEAKGIVNQMVDSGCLPDTTTFNTLIVALCTENQLEEALDLARELTVK 400
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
GL P + AL + AV + E ++ GC Y ++++
Sbjct: 401 -GLSPNVYTFNILINALCKVGDPHLAVRLFEEMKSSGCTPDEVTYNILID 449
>gi|223635748|sp|Q9LVQ5.2|PP432_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g55840
Length = 1096
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++Q+ +SG P + +L W ++ + ++ ++L MKS G D T N L+
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLH--WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC +++ + +L+ M P+ +Y+ +I S K A +++ EM L+ GL P
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM-LSFGLSP 331
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A++M +E KG Y V+++G + E+ LA
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 391
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M M G +++GL G A V+
Sbjct: 392 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM +G+HP T L+ LC L EA K LK + + D Y+ ++ AM +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627
Query: 221 KTNDAVEMMKEMV 233
AV + EMV
Sbjct: 628 NLAKAVSLFGEMV 640
>gi|255660990|gb|ACU25664.1| pentatricopeptide repeat-containing protein [Glandularia incisa]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P+ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + + I L A L+R +L M G
Sbjct: 108 GYIDKSLHVLEMAQQ--KGGVLDAFAYSAMINGLCKEANLDR------AVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +V + M + C P + +Y+ +I + +A
Sbjct: 160 CKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ KA+++ + KG Q + +++ G
Sbjct: 220 NLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+ + A V+ R
Sbjct: 279 LCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|255660980|gb|ACU25659.1| pentatricopeptide repeat-containing protein [Glandularia
microphylla]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 73/156 (46%), Gaps = 3/156 (1%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P+ Y+ +I + A K DA+ + +EM M
Sbjct: 135 MINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMX-TM 193
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYIL 295
P + L N A +++ L KG G Y ++++G CL+ +
Sbjct: 194 HCSPTIITYNTLINGLCKNEMFGXAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HKVEK 252
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 253 ALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 82/198 (41%), Gaps = 4/198 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ ++ +L M G P+ N L++ L + +A +V + M +
Sbjct: 133 SAMINGLCKEANLBRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFREMXT 192
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P + +Y+ +I + A ++KE+ L+ GL P + L + ++
Sbjct: 193 MHCSPTIITYNTLINGLCKNEMFGXAYNLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVE 251
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
KA+++ + KG Q + +++ G + LA M P + ++
Sbjct: 252 KALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLM 311
Query: 320 EGLAGVGEWKLATVVRQR 337
EG G+ + A V+ R
Sbjct: 312 EGFYKDGDIRNALVIWAR 329
>gi|255660964|gb|ACU25651.1| pentatricopeptide repeat-containing protein [Verbena canescens]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 79/159 (49%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALYVLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA--NREMW-KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + +EM+ +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLISGLCKKEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 38/180 (21%), Positives = 77/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLTGMIKSGCKPNIHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLISGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KKEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M R P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRRKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|296423459|ref|XP_002841271.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637508|emb|CAZ85462.1| unnamed protein product [Tuber melanosporum]
Length = 729
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 72/156 (46%), Gaps = 3/156 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M++ G P T N ++ L + EA + L+ + DL +Y+ ++ A+
Sbjct: 432 VLKDMQNSGLKPTTATINAVLDGLLKHQHMDEAKETLQVATRMGIKSDLTTYNTMLRALL 491
Query: 218 TARKTNDAVEMMKEMV---LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
++K N+A+ +++EM +N ++ ++ + ++ K ++E++E G P
Sbjct: 492 RSKKFNEAISLLQEMQAAGINADIVTATTVLDGMYKNSPTKPDLAKVKSLLEYMEAVGVP 551
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ ++EG LE R A M +G P
Sbjct: 552 ANEVTFTTIIEGLLETRNEQAAQDIWEIMESKGLKP 587
>gi|357517409|ref|XP_003628993.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355523015|gb|AET03469.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 819
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 69/305 (22%), Positives = 127/305 (41%), Gaps = 37/305 (12%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLE--SFIPLRPRSRPKI-AYDYLLSYTLQSLHPLPLA 119
N P F +F +H + L+ SF + R + +Y L+ L S H +P A
Sbjct: 72 NLTPHEFEHSFFTHHTTVNLKTTLDFFSFASKNFKFRFTVRSYCILIRLLLASNH-IPRA 130
Query: 120 LAILQRTLRSGC-VPVPQIRLLLS---SAWLERRCQSQSVADILL-----EMKSIGYH-- 168
L+R + P+ + LS SA+LE +S D+L+ + + +G+H
Sbjct: 131 KFTLKRLIEGNANTPLKKTDARLSEIASAFLELGERSHGELDLLIYILCSQFQHLGFHWA 190
Query: 169 -------------PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
P +CN+L+SSL ++L ++ +V M + D+ +Y+ I A
Sbjct: 191 FDTFMLFTSKGVFPSLKSCNFLMSSLVKSNELHKSFRVFDAMCRGGVLIDVYTYATAINA 250
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERK 271
K ++AV + +M G++P ++ + + R + M+ E K
Sbjct: 251 YCKGGKIDEAVGLFLKMG-EGGVLPNVVTYNNLIDGLCKSGRLEEALMFKGRMV---ENK 306
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
P Y ++V G ++ ++ A ++ M +GF P V +++G + G A
Sbjct: 307 VNP-SLVTYGILVNGLVKFEKFDEANSVLVEMYSKGFSPNEFVFNALIDGYSRKGNMDDA 365
Query: 332 TVVRQ 336
VR
Sbjct: 366 LRVRD 370
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/168 (19%), Positives = 73/168 (43%), Gaps = 3/168 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G+ PD T N+L+ L ++ + +VL VP++ +Y++++ A
Sbjct: 547 KMMKQGFKPDTYTYNFLMKGLADKGKMDDVGRVLHEAKDHGVVPNIYTYALMLEGYCNAD 606
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++AV + ++V N + I +AA +A +A ++ + + Y
Sbjct: 607 RIDNAVSLFNKLVYNKVELSYVVYNILIAAHSKAGN-FTEAFKLRDAMRSSNIHPTIFTY 665
Query: 281 EVVVEGCLECREYILAGKTVM-GMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G + C + + K + M G +P + ++ G +G+
Sbjct: 666 SSIIHG-MCCNDLVEEAKGIFEEMRNEGLMPNVFCYTALIGGYCKLGQ 712
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I EM++ G P+ L+ C + Q+ + +L+ M+S P+ +Y+I+I
Sbjct: 684 IFEEMRNEGLMPNVFCYTALIGGYCKLGQMDQIESILQEMTSNCIQPNKITYTIMIDGYC 743
Query: 218 TARKTNDAVEMMKEMVLNMGLMP 240
T +A +++ EM+ N G+ P
Sbjct: 744 KMGNTKEATKLLNEMIAN-GISP 765
>gi|302767258|ref|XP_002967049.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
gi|300165040|gb|EFJ31648.1| hypothetical protein SELMODRAFT_70269 [Selaginella moellendorffii]
Length = 454
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 77/176 (43%), Gaps = 5/176 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L M + PD T L+ LC D++ EA + +GM+ C PDL ++++++ +
Sbjct: 202 DLLTVMVENSFQPDKITFTALIEGLCTTDRIKEAFVLFQGMAKQGCAPDLVTHTVLVSKL 261
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIK-VAAALRANREMWKAVEMIEFLERKGCPI 275
RK A+ +++ N P ++ + L R +A +++ + R+G
Sbjct: 262 CIRRKLRPALSVVR----NYPACPEAVILYTPIFRELGRRRGFDRAARLLQKMARRGVAP 317
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +G + +E + A + M E+G P + +V+G +A
Sbjct: 318 NVVTYTAFFKGLGDWKEGMRAYREFRRMLEQGIEPDMVAYNVLVDGFCKANRLDMA 373
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
+P+ ++ + L C++ VA + M+ G P T L+ C + Q A
Sbjct: 71 MPEPDVVTYNTLLGGLCKNGRVAQACSLFGSMEGAGITPSDVTYTTLIDVFCKMCQFETA 130
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+L+ M+S +C P + SY +I + RK + A ++ +EM L
Sbjct: 131 YGLLQLMASRKCSPTVYSYCSIINGLCKNRKVDQAYQLFEEMKL 174
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
YLV +LC ++ +A + M+ + VPD+ +Y++VI + AR+ + A+E + M
Sbjct: 15 YLVKALCRTGKIDKACSTIAEMAREKLVPDVFTYNVVIDTLCKARRISRAIEFFETM 71
>gi|225461712|ref|XP_002283237.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Vitis vinifera]
Length = 464
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+L+ +GC P + S + + ++ +L EM + G PD + N ++S
Sbjct: 274 FVVLEEMRENGCKPDTVTYNAMISGFCNEK-DFEAAYGVLEEMVAKGCKPDVISYNVIIS 332
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC + EA + + M C PD+ SY I+ + + N+A ++ EMV G
Sbjct: 333 GLCKEGKWREANDLFEDMPRRGCTPDVGSYRILFDGLCEGMQFNEAAFILDEMVFK-GYA 391
Query: 240 PRQGMVIKVAAAL 252
P+ K AL
Sbjct: 392 PKSASKTKFVEAL 404
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 66/173 (38%), Gaps = 36/173 (20%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM+ G PD T N ++S C A VL+ M + C PD+ SY+++I +
Sbjct: 276 VLEEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLC 335
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K +A ++ ++M R+GC
Sbjct: 336 KEGKWREANDLFEDM------------------------------------PRRGCTPDV 359
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
Y ++ +G E ++ A + M +G+ P + K VE L G +L
Sbjct: 360 GSYRILFDGLCEGMQFNEAAFILDEMVFKGYAPKSASKTKFVEALCQEGNLEL 412
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 5/187 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PD 205
C S S+ D + EM P+ T L+S LC +L EA ++ + M V P+
Sbjct: 159 CSSGSLGDAWNVFDEMLRKHVCPNVVTFGTLISGLCGDSRLDEAFRLKEDMVKVFNVKPN 218
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y+ ++ + + + A E+ KEMV N L G+ + AAL + ++
Sbjct: 219 AFVYASLMKGLCRVNELSLAFELKKEMVANK-LRLDSGIYSTLIAALFKVGRKDEVFVVL 277
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + GC Y ++ G +++ A + M +G P + ++ GL
Sbjct: 278 EEMRENGCKPDTVTYNAMISGFCNEKDFEAAYGVLEEMVAKGCKPDVISYNVIISGLCKE 337
Query: 326 GEWKLAT 332
G+W+ A
Sbjct: 338 GKWREAN 344
>gi|255660984|gb|ACU25661.1| pentatricopeptide repeat-containing protein [Glandularia flava]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 75/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P+ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRAVSVLNGMIKSGCKPNAHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VEKALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + G V +++ L + +L M G
Sbjct: 108 GYIDKSLHVLEMA------EQKGGVVDAFAYSAMING--LCKEANLDRAVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +V + M + C P + +Y+ +I + +A
Sbjct: 160 CKPNAHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLCKNEMFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ KA+++ + KG Q + +++ G
Sbjct: 220 NLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVEKALQLWNQVTSKGFKPDVQMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+ + A V+ R
Sbjct: 279 LCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|108862162|gb|ABA95747.2| Cytochrome P450 family protein [Oryza sativa Japonica Group]
Length = 1595
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL ++ + + + LEM+ G+ P+ N ++ +LC +A +LK M ++ C P
Sbjct: 1057 WLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDP 1116
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE- 263
D+ +++ +I + A ++E + L P Q + E+ A +
Sbjct: 1117 DIITFNTLITGLCHEGHVRKAEHFLREAI-RRELNPNQLSYTPLIHGFCMRGELMVASDL 1175
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQK 317
++E + R P +VV G L ++AGK MTER P + +
Sbjct: 1176 LVEMMGRGHTP------DVVTFGAL-IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 1228
Query: 318 VVEGL 322
++ GL
Sbjct: 1229 LISGL 1233
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+D+L+EM G+ PD T L+ L ++ EA V + M+ + PD+ Y+++I
Sbjct: 1173 SDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 1232
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CP 274
+ R A +++EM L + P + + + + + A ++ EF+E KG CP
Sbjct: 1233 LCKKRMLPAAKNILEEM-LEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 1291
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 30/121 (24%), Positives = 52/121 (42%), Gaps = 7/121 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LP A IL+ L P + L ++ +S+++ D I M+ G PD
Sbjct: 1239 LPAAKNILEEMLEKNVQPDEFVYATLIDGFI----RSENLGDARKIFEFMEHKGVCPDIV 1294
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+CN ++ C + EA + M C+PD +Y+ VI + N A+ + +M
Sbjct: 1295 SCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQGNLNGALRWLCDM 1354
Query: 233 V 233
+
Sbjct: 1355 I 1355
Score = 38.1 bits (87), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 64/166 (38%), Gaps = 5/166 (3%)
Query: 170 DCGTCNY----LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
D G NY LV LC ++ E K+++ A C+P + Y+++I
Sbjct: 973 DSGADNYSTCVLVRGLCLERRVEEGLKLIEARWGAGCIPHVVFYNVLIDGYCRRGDMGRG 1032
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ ++ EM N G +P + L ++ K + + ++G Q Y V++
Sbjct: 1033 LLLLGEMETN-GFLPTLVTYGSLINWLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVID 1091
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
CR A + M G P I ++ GL G + A
Sbjct: 1092 ALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGHVRKA 1137
>gi|357113916|ref|XP_003558747.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g01110-like [Brachypodium distachyon]
Length = 651
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 8/183 (4%)
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
LL + W + R ++ M + G PD + N L+ C +L EA + K M
Sbjct: 239 LLRNGRWDKAR-------EVFRAMDACGVAPDVRSFNMLIGGFCRAGELEEALRFYKEMR 291
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
PD+ S+S +IG + + + A E ++EM GLMP + V M
Sbjct: 292 GRRVTPDVVSFSCLIGLFTRRGEMDHAAEYLREM-REFGLMPDGVIYTMVIGGFCRAGLM 350
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A+ + + + GC Y ++ G + R A + + M ERG P + +
Sbjct: 351 LEALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSDAEELLNEMKERGVPPDLCTFTTL 410
Query: 319 VEG 321
+ G
Sbjct: 411 IHG 413
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ +C L +A ++ M S E P+ +YSI+I + + ++A
Sbjct: 437 PDIVTYNTLIDGMCRQGDLGKANELWDDMHSREIFPNHVTYSILIDSHCEKGQVDNAFAF 496
Query: 229 MKEMVLNMGLMP 240
+ EMV N G++P
Sbjct: 497 LDEMV-NKGIVP 507
Score = 40.8 bits (94), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 48/115 (41%), Gaps = 3/115 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL + + GC+P V LL+ ERR ++L EMK G PD T L
Sbjct: 353 ALRVRDEMVAFGCLPDVVTYNTLLNGLCKERRLSD--AEELLNEMKERGVPPDLCTFTTL 410
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ C + +A + +S PD+ +Y+ +I M A E+ +M
Sbjct: 411 IHGYCRDGNIEKALQFFDTISDQRLRPDIVTYNTLIDGMCRQGDLGKANELWDDM 465
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 80/203 (39%), Gaps = 4/203 (1%)
Query: 84 EMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSS 143
+++ S + P +P++ +D L+ QS P A R L VP+P
Sbjct: 75 DIVSSLLASSPTPQPQV-FDLLIRTYTQSRKPREAFEAF--RLLLDHRVPIPAAASNALL 131
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R AD + S + T N +V S C Q E V+ M
Sbjct: 132 AALSRAGWPHLTADAYRLVLSSNSEVNTYTLNIMVHSYCKTLQFGEVDTVISEMEKRCVF 191
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ ++++++ A A A+ ++ MV + G+ P V L N KA E
Sbjct: 192 PDVVTHNVMVDARFRAGDVEAAMALIDSMV-SKGIKPGLVTYNSVLKGLLRNGRWDKARE 250
Query: 264 MIEFLERKGCPIGFQGYEVVVEG 286
+ ++ G + + +++ G
Sbjct: 251 VFRAMDACGVAPDVRSFNMLIGG 273
>gi|356540361|ref|XP_003538658.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 87/207 (42%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A + Q L GC PV LL + L+ C+ V + I +M S PD T +
Sbjct: 235 AHELFQAMLEQGC-PVD---LLAYNNLLQALCKGGCVDEAKTIFHDMLSKRVEPDAFTYS 290
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ S C D + A +VL M +P++ +Y+ +I + +A ++ EM+ +
Sbjct: 291 IFIHSYCDADDVQSALRVLDKMRRYNILPNVFTYNCIIKRLCKNEHVEEAYLLLDEMI-S 349
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + A + E+ +A+ ++ +E+ C Y +V++ + +
Sbjct: 350 RGVRPDTWSYNAIQAYHCDHCEVNRAIRLMFRMEKDNCLPDRHTYNMVLKLLIRIGRFDK 409
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
K M ++ F P + ++ G
Sbjct: 410 VTKVWGNMGDKKFYPSVSTYSVMIHGF 436
>gi|356514549|ref|XP_003525968.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g53330-like [Glycine max]
Length = 465
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/174 (26%), Positives = 72/174 (41%), Gaps = 39/174 (22%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL-KGMSSAECVPDLESYSIVIGAM 216
IL EMKS G PD TCN L+ C LVEA +VL G+ + PD+ Y++VIG +
Sbjct: 285 ILEEMKSGGVKPDAVTCNVLIGEFCREGNLVEAYRVLDDGVEGVK--PDVFGYNVVIGWL 342
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A ++ ++ MPR+ V V
Sbjct: 343 CKEGKWREADDLFRD-------MPRRQCVPDVVT-------------------------- 369
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
Y V +G + ++ AG + M +G++P + V L G+++L
Sbjct: 370 ---YRTVFDGLCQWMQFEEAGLVLEEMVFKGYVPCSSSLNEFVGRLCQEGDFEL 420
>gi|225452994|ref|XP_002263091.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 588
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMS 198
+A ++ C V D+ +++ H DC + N L++ C I + +A + + MS
Sbjct: 319 NALMDGHCLRNEV-DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 377
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
E P+ +Y+ +I + + DA+ + EMV G +P ++ L NR +
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHL 436
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
KA+ +++ +E Q Y +++G E A ++ +G P + +
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 496
Query: 319 VEGLAGVG 326
+ GL G
Sbjct: 497 IHGLCKQG 504
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ +L+ + C P +++ S ++ C+ + V +I EM + G P+ T N
Sbjct: 194 AIRLLRSMEQGNCQP----NVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM---STARKTNDAVEMMKEM 232
L+ LC + + ++ M ++ +PD+ + + V+ A+ + +D V+MM
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM--- 306
Query: 233 VLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
++ G+ P V+ A + + E+ AV++ + + K C Y ++ G +
Sbjct: 307 -IHRGVEPN---VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A M+ + P ++ GL VG + A
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA 404
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ P+ T L++ LC + A ++L+ M C P++ +S +I ++ R+ +A
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREM--WKAVE--MIEFLERKGCPIGFQGYE 281
+ EM+ G+ P ++ + + ++ WK V M E ++ K P F
Sbjct: 230 FNIFSEMITK-GISPN---IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT-LN 284
Query: 282 VVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
VV+ C+E ++ A V M RG P + +++G
Sbjct: 285 TVVDAL--CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 324
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L LC L +A +LK + + PD++ Y+ +
Sbjct: 402 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 461
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ M A + DA ++ + + GL P + L + +A ++ + + G
Sbjct: 462 LDGMCRAGELEDARDLFSNLS-SKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
C Y ++ G L E + + + M RGF
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 556
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 9/253 (3%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDY--LLSYTLQSLHPLPLALAILQRTLRSGCVP-- 133
+DE L +F + + P D+ LL+ ++ H L L R + S +P
Sbjct: 47 HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHS--TLLSLSRQMDSFGIPPD 104
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
V + ++++S R A L ++ +G+ PD T L+ LC ++ EA +
Sbjct: 105 VYTLAIVINSLCHLNRVDFAFSA--LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 162
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M P++ +Y +I + T+ A+ +++ M P + + +L
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPNVVVFSTLIDSLC 221
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+R++ +A + + KG Y ++ G + E+ + M + +P +
Sbjct: 222 KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281
Query: 314 VRQKVVEGLAGVG 326
VV+ L G
Sbjct: 282 TLNTVVDALCKEG 294
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
+ Y L Y ++ H L A+A+L+ S P QI + L+ C++ +
Sbjct: 421 VTYRTLSDYLCKNRH-LDKAMALLKAIEGSNWDPDIQIY----TTILDGMCRAGELEDAR 475
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + S G P+ T N ++ LC L EA+K+ M+ C P+ +Y+++
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535
Query: 217 STARKTNDAVEMMKEMV 233
+ +E+++EM+
Sbjct: 536 LRNNEALRTIELLEEML 552
>gi|359475386|ref|XP_003631674.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g39710-like [Vitis vinifera]
Length = 762
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/235 (21%), Positives = 101/235 (42%), Gaps = 12/235 (5%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151
+R R P + +L S+ L L R+GC+P ++ + ++ C+
Sbjct: 206 IRSRVSPNVYTYNILIRGFCSVGELQKGLGCFGEMERNGCLP----NVVTYNTLIDAYCK 261
Query: 152 SQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + +L M S G P+ + N +++ LC + EA ++L+ M PD +
Sbjct: 262 MGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREGSMKEAWEILEEMGYKGFTPDEVT 321
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ + A+ + EMV N G+ P + ++ R + +A+E + +
Sbjct: 322 YNTLLNGYCKEGNFHQALVIHAEMVRN-GVSPSVVTYTALINSMCKARNLNRAMEFFDQM 380
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
+G + Y +++G R+ +L A + + MTE GF P + + G
Sbjct: 381 RIRGLRPNERTYTTLIDGF--SRQGLLNEAYRILNEMTESGFSPSVVTYNAFIHG 433
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 71/166 (42%), Gaps = 3/166 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G+ P T N + C ++++ EA V++ M PD+ SYS +I
Sbjct: 411 ILNEMTESGFSPSVVTYNAFIHGHCVLERMEEALGVVQEMVEKGLAPDVVSYSTIISGFC 470
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A +M +EMV G+ P + L R + +A ++ + + G P
Sbjct: 471 RKGELDRAFQMKQEMV-EKGVSPDAVTYSSLIQGLCEMRRLTEACDLSQEMLDMGLPPDE 529
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ C+E + A M +GF+P ++ GL
Sbjct: 530 FTYTTLINAYCVE-GDLNKALHLHDEMIHKGFLPDAVTYSVLINGL 574
Score = 45.1 bits (105), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G P+ T N L+ + C + ++ EA +LK MSS P+L SY+++I +
Sbjct: 239 EMERNGCLPNVVTYNTLIDAYCKMGRIDEAFGLLKSMSSKGMQPNLISYNVIINGLCREG 298
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+A E+++EM G P + + +A+ + + R G Y
Sbjct: 299 SMKEAWEILEEMGYK-GFTPDEVTYNTLLNGYCKEGNFHQALVIHAEMVRNGVSPSVVTY 357
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ + R A + M RG P + +++G + G
Sbjct: 358 TALINSMCKARNLNRAMEFFDQMRIRGLRPNERTYTTLIDGFSRQG 403
>gi|413923869|gb|AFW63801.1| hypothetical protein ZEAMMB73_133996 [Zea mays]
Length = 485
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/176 (23%), Positives = 80/176 (45%), Gaps = 4/176 (2%)
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYTLQSLHPLPL 118
C + +F + R+ ++E ++F + R I Y+ ++S L +
Sbjct: 131 CNQTDFIAFSAYINGRSRLDYVNEAYQAFAEMTSRGIVPNNITYNSIIS-ALCKAGNMTE 189
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + Q +SG VP +L L R + + V ++LL+M S G PD T N ++
Sbjct: 190 AFKLEQNMRQSGLVPDIYTSNILIDG-LCREGKLKMVDNLLLDMCSNGLTPDTVTYNTII 248
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
++ C + A + M A C PD+ +Y+I + ++ N A +++ E+V+
Sbjct: 249 NAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGKLLDELVV 304
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 136 QIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q + SA++ R + V + EM S G P+ T N ++S+LC + EA K
Sbjct: 133 QTDFIAFSAYINGRSRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFK 192
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVA 249
+ + M + VPD+ + +I+I + K ++M+ ++L+M GL P +
Sbjct: 193 LEQNMRQSGLVPDIYTSNILIDGLCREGK----LKMVDNLLLDMCSNGLTPDTVTYNTII 248
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
A ++M A+ + + GC Y + + AGK
Sbjct: 249 NAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGK 297
>gi|293333312|ref|NP_001168014.1| uncharacterized protein LOC100381738 [Zea mays]
gi|223945505|gb|ACN26836.1| unknown [Zea mays]
Length = 462
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 68/301 (22%), Positives = 128/301 (42%), Gaps = 21/301 (6%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSN---FPQNHRIKVIDEMLESF 89
T ++ AK ++Q EL+ +PN +F + F QN + E+LE
Sbjct: 9 TYNTVLKGLCCAKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQ- 67
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL---RSGCVPVPQIRLLLSSAWL 146
+P + I Y L++ + AL +L L + C L ++ W
Sbjct: 68 MPKYGCTPDVIIYSTLVN-GFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWE 126
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE-AAKVLKGMSSAECVPD 205
E V +++ EM P+ T + L++SLC ++LVE A +VL+ M +PD
Sbjct: 127 E-------VGELIAEMVRKDCPPNDATFSTLINSLCQ-NRLVEYAVEVLEQMQKYGYMPD 178
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ SY+ +I S + +DA++++K M+ P V L + + AVE++
Sbjct: 179 VVSYNTIISCFSDQARADDALKLLKSMLCK----PDTISFNAVLKCLCKAKRWYDAVELV 234
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ +K C I + ++++ + + A + M + +P I ++ G +
Sbjct: 235 AKMLKKDCRINEMTFNILIDSLCQNGQVKDAIEVFELMPKYRCMPDIVTYSSLINGFSEQ 294
Query: 326 G 326
G
Sbjct: 295 G 295
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 60/138 (43%), Gaps = 9/138 (6%)
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD +Y+ V+ + A++ A E+M+EM+ N P + A N + +AVE
Sbjct: 5 PDTYTYNTVLKGLCCAKQWEQAEELMREMIRN-SCHPNEVTFATQIRAFCQNGLLDRAVE 63
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
++E + + GC Y +V G E A K + M R P ++GL
Sbjct: 64 LLEQMPKYGCTPDVIIYSTLVNGFSEHGRVDEALKLLNTMLCR---PNTVCYNAALKGLC 120
Query: 324 GVGEWK-----LATVVRQ 336
G W+ +A +VR+
Sbjct: 121 IAGRWEEVGELIAEMVRK 138
>gi|15228903|ref|NP_188314.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274022|sp|Q9LSQ2.1|PP239_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16890, mitochondrial; AltName: Full=Protein
PENTATRICOPEPTIDE REPEAT 40; Flags: Precursor
gi|7670019|dbj|BAA94973.1| salt-inducible protein-like [Arabidopsis thaliana]
gi|332642359|gb|AEE75880.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 659
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+L++ L G P V L+++ L R + + D EM G P+ T N L+
Sbjct: 481 GVLEKLLVHGFKPDVITFSLIINC--LCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
S C+ + K+ M PDL +Y+ I + RK A E++K M L +GL
Sbjct: 539 SCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM-LRIGLK 597
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
P + AL + +A EM +ER GC
Sbjct: 598 PDNFTYSTLIKALSESGRESEAREMFSSIERHGC 631
Score = 44.3 bits (103), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+S G PD T N L+ +C + EA +++K M P++ +Y+I+I A
Sbjct: 205 QMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAG 264
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A++ + EM+ L P + + + KA E++ K + GY
Sbjct: 265 RVDEALKQL-EMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGY 323
Query: 281 EVVVEGCLECREYIL-AGKTVMGMTERGFIP 310
+ V+ CL G+ + + ERG+IP
Sbjct: 324 DAVLY-CLSNNSMAKETGQFLRKIGERGYIP 353
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 13/192 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L ++ L ++ GY PD T N +S L LVE ++ G S P
Sbjct: 330 LSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPG 389
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y +++ A+ A++ ++ +K+M ++ GL+ V L R + A +
Sbjct: 390 FNGYLVLVQALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARRIENAAMFL 448
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAG--KTVMGMTER----GFIPYIKVRQKVV 319
++ +G + + G Y + G K V G+ E+ GF P + ++
Sbjct: 449 TEMQDRGISPNLVTFNTFLSG------YSVRGDVKKVHGVLEKLLVHGFKPDVITFSLII 502
Query: 320 EGLAGVGEWKLA 331
L E K A
Sbjct: 503 NCLCRAKEIKDA 514
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ A L EM+ G P+ T N +S + + VL+ + PD+ ++S++
Sbjct: 442 ENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLI 501
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + A++ DA + KEM L G+ P + + + + + ++V++ ++ G
Sbjct: 502 INCLCRAKEIKDAFDCFKEM-LEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENG 560
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++ + R+ A + + M G P +++ L+ G
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESG 614
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
PL L++ +L+ SG ++ +L +W R ++ D+ ++ +G P
Sbjct: 125 PLLLSMELLKEIRDSGYRISDELMCVLIGSW-GRLGLAKYCNDVFAQISFLGMKPSTRLY 183
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N ++ +L + L A + M S C PD +Y+I+I + ++A+ ++K+M
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 241
>gi|147768816|emb|CAN62673.1| hypothetical protein VITISV_031897 [Vitis vinifera]
Length = 653
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 81/188 (43%), Gaps = 6/188 (3%)
Query: 143 SAWLERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLVEAAKVLKGMS 198
+A ++ C V D+ +++ H DC + N L++ C I + +A + + MS
Sbjct: 319 NALMDGHCLRNEV-DVAVKVFDTMVHKDCVANVISYNTLINGYCKIQSVDKAMYLFEEMS 377
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
E P+ +Y+ +I + + DA+ + EMV G +P ++ L NR +
Sbjct: 378 RQELTPNTVTYNTLIHGLCHVGRLQDAISLFHEMVAR-GQIPDLVTYRTLSDYLCKNRHL 436
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
KA+ +++ +E Q Y +++G E A ++ +G P + +
Sbjct: 437 DKAMALLKAIEGSNWDPDIQIYTTILDGMCRAGELEDARDLFSNLSSKGLQPNVWTYNIM 496
Query: 319 VEGLAGVG 326
+ GL G
Sbjct: 497 IHGLCKQG 504
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/222 (20%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ +L+ + C P +++ S ++ C+ + V +I EM + G P+ T N
Sbjct: 194 AIRLLRSMEQGNCQP----NVVVFSTLIDSLCKDRQVTEAFNIFSEMITKGISPNIVTYN 249
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM---STARKTNDAVEMMKEM 232
L+ LC + + ++ M ++ +PD+ + + V+ A+ + +D V+MM
Sbjct: 250 SLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFTLNTVVDALCKEGMVAEAHDVVDMM--- 306
Query: 233 VLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
++ G+ P V+ A + + E+ AV++ + + K C Y ++ G +
Sbjct: 307 -IHRGVEPN---VVTYNALMDGHCLRNEVDVAVKVFDTMVHKDCVANVISYNTLINGYCK 362
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ A M+ + P ++ GL VG + A
Sbjct: 363 IQSVDKAMYLFEEMSRQELTPNTVTYNTLIHGLCHVGRLQDA 404
Score = 45.8 bits (107), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 38/162 (23%), Positives = 73/162 (45%), Gaps = 13/162 (8%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ P+ T L++ LC + A ++L+ M C P++ +S +I ++ R+ +A
Sbjct: 170 GFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPNVVVFSTLIDSLCKDRQVTEA 229
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREM--WKAVE--MIEFLERKGCPIGFQGYE 281
+ EM+ G+ P ++ + + ++ WK V M E ++ K P F
Sbjct: 230 FNIFSEMITK-GISPN---IVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVFT-LN 284
Query: 282 VVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEG 321
VV+ C+E ++ A V M RG P + +++G
Sbjct: 285 TVVDAL--CKEGMVAEAHDVVDMMIHRGVEPNVVTYNALMDG 324
Score = 44.7 bits (104), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 36/156 (23%), Positives = 64/156 (41%), Gaps = 1/156 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD T L LC L +A +LK + + PD++ Y+ +
Sbjct: 402 QDAISLFHEMVARGQIPDLVTYRTLSDYLCKNRHLDKAMALLKAIEGSNWDPDIQIYTTI 461
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ M A + DA ++ + + GL P + L + +A ++ + + G
Sbjct: 462 LDGMCRAGELEDARDLFSNLS-SKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNG 520
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
C Y ++ G L E + + + M RGF
Sbjct: 521 CSPNDCTYNLITRGFLRNNEALRTIELLEEMLARGF 556
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 50/253 (19%), Positives = 101/253 (39%), Gaps = 9/253 (3%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDY--LLSYTLQSLHPLPLALAILQRTLRSGCVP-- 133
+DE L +F + + P D+ LL+ ++ H L L R + S +P
Sbjct: 47 HFNTLDEALSTFNRMLHKQPPPSTVDFNRLLTSIAKTKHHS--TLLSLSRQMDSFGIPPD 104
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
V + ++++S R A L ++ +G+ PD T L+ LC ++ EA +
Sbjct: 105 VYTLAIVINSLCHLNRVDFAFSA--LAKILKLGHQPDATTFTTLIRGLCVEGKIGEALHL 162
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
M P++ +Y +I + T+ A+ +++ M P + + +L
Sbjct: 163 FDKMIGEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQG-NCQPNVVVFSTLIDSLC 221
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+R++ +A + + KG Y ++ G + E+ + M + +P +
Sbjct: 222 KDRQVTEAFNIFSEMITKGISPNIVTYNSLIHGLCKLCEWKHVTTLMNEMVDSKIMPDVF 281
Query: 314 VRQKVVEGLAGVG 326
VV+ L G
Sbjct: 282 TLNTVVDALCKEG 294
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVA 156
+ Y L Y ++ H L A+A+L+ S P QI + L+ C++ +
Sbjct: 421 VTYRTLSDYLCKNRH-LDKAMALLKAIEGSNWDPDIQIY----TTILDGMCRAGELEDAR 475
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ + S G P+ T N ++ LC L EA+K+ M+ C P+ +Y+++
Sbjct: 476 DLFSNLSSKGLQPNVWTYNIMIHGLCKQGLLAEASKLFSEMNKNGCSPNDCTYNLITRGF 535
Query: 217 STARKTNDAVEMMKEMV 233
+ +E+++EM+
Sbjct: 536 LRNNEALRTIELLEEML 552
>gi|302816356|ref|XP_002989857.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
gi|300142423|gb|EFJ09124.1| hypothetical protein SELMODRAFT_45144 [Selaginella moellendorffii]
Length = 394
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/180 (23%), Positives = 88/180 (48%), Gaps = 11/180 (6%)
Query: 59 EACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115
EA P+P S+ + + +++R+ E+++ + + P + +L L
Sbjct: 215 EAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQ--AMERKCMPGVPVCTVLVDGLCKSRR 272
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ A IL+R L +G P + + SA ++ C++ + D +L +M+ G PD
Sbjct: 273 VEEACVILERMLEAG-DRAPSV--VTYSAVIDGLCKADRLDDAYIVLQKMRRAGCVPDVV 329
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T ++ + C + +L EA ++ + M C D+ +Y+I+I A K ++A+ M++EM
Sbjct: 330 TYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRGYCRAAKVDEAIAMIEEM 389
Score = 45.4 bits (106), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 80/174 (45%), Gaps = 7/174 (4%)
Query: 116 LPLALAILQRTLRSGCVPVP-QIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGT 173
L A A+ + + +GC P P +++ S + R +++ + D +E K + P
Sbjct: 203 LDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQAMERKCM---PGVPV 259
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C LV LC ++ EA +L+ M + + P + +YS VI + A + +DA ++++M
Sbjct: 260 CTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDDAYIVLQKM 319
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G +P + A + +A E+ + + +GC Y +++ G
Sbjct: 320 -RRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHERGCASDVVAYNILIRG 372
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 69/302 (22%), Positives = 131/302 (43%), Gaps = 31/302 (10%)
Query: 53 LLGSFEEACQNPNPFSFLS--------NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104
LLG + A P +F S NF N +++ +M++ + ++P + Y
Sbjct: 1 LLGEMKAAGITPTIVTFGSLIRKLCELNFT-NKALQIFHQMID--MKVKPDA---FLYTV 54
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
++ + L ++ L LA + ++ ++SGC+P +L + L + C+ + I EM S
Sbjct: 55 VIGH-LCKINKLDLAASYFEQMVQSGCLPDKVTYTVLVHS-LFKACKWEQGHQIFEEMLS 112
Query: 165 IGYHPDCGTCNYLVSSLCA---IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
G+ P+ T +V+ C IDQ + + LKG + P YS +I + +
Sbjct: 113 KGHSPELVTYATVVNGYCKAGRIDQALSLMRRLKGTGRS---PSGSLYSTLIDGLCKHDR 169
Query: 222 TNDAVEMMKEMVLNM-GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+A E+ + ++ ++ + + A + + V+MIE GC Y
Sbjct: 170 HEEARELFEMAAGDVQDVIVYTSFISGLCKAGKLDEAKAVHVKMIE----AGCAPDPVSY 225
Query: 281 EVVVEG-CLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
V++ C + R + K +M ER +P + V +V+GL + A V+ +R
Sbjct: 226 NVIIYSLCKDNR--VSEAKELMDQAMERKCMPGVPVCTVLVDGLCKSRRVEEACVILERM 283
Query: 339 AE 340
E
Sbjct: 284 LE 285
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/165 (23%), Positives = 69/165 (41%), Gaps = 2/165 (1%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+S LC +L EA V M A C PD SY+++I ++ + ++A E+M + +
Sbjct: 193 FISGLCKAGKLDEAKAVHVKMIEAGCAPDPVSYNVIIYSLCKDNRVSEAKELMDQ-AMER 251
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIE-FLERKGCPIGFQGYEVVVEGCLECREYIL 295
MP + + L +R + +A ++E LE Y V++G +
Sbjct: 252 KCMPGVPVCTVLVDGLCKSRRVEEACVILERMLEAGDRAPSVVTYSAVIDGLCKADRLDD 311
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M G +P + +++ VG A + QR E
Sbjct: 312 AYIVLQKMRRAGCVPDVVTYTAIIDAFCKVGRLDEARELFQRMHE 356
>gi|125537003|gb|EAY83491.1| hypothetical protein OsI_38705 [Oryza sativa Indica Group]
Length = 696
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +L+ + G +P ++ ++ ++ C + + D + EM G P+ T N
Sbjct: 487 AKVVLKMLMEHGFMP----DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 542
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC+ + +A +L M PD S++ +I + RK + A ++ +MV
Sbjct: 543 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMV-R 601
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYI 294
G++P + AL R + KA E++ ER GC Q Y +V + ++
Sbjct: 602 FGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFS 661
Query: 295 LAGK 298
AG+
Sbjct: 662 EAGE 665
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 22/240 (9%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M+I ++ +C++ L +SS+ + + V A + E++ ++
Sbjct: 403 MVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK 462
Query: 61 CQNPNPFSF------LSNFPQNHRIKVIDEML--ESFIPLRPRSRPKIAYDYLLSYTLQS 112
PN +F S H KV+ +ML F+P I + L+ L +
Sbjct: 463 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP------DIITFTSLID-GLCN 515
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
H L A + G P Q +L + C + V D+L +MK G P
Sbjct: 516 THQLDDAFVCFEEMAEWGVRPNAQTYNVL----MHTLCSAGHVNKAIDLLNKMKIDGVTP 571
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N L+ S C + ++ +A + M VPD +Y+ +I A+ R+ N A E++
Sbjct: 572 DAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM+ G+ P+ T N L+S + + A VLK + +PD+ +++ +I +
Sbjct: 454 EIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGL 513
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +DA +EM G+ P + L + + KA++++ ++ G
Sbjct: 514 CNTHQLDDAFVCFEEMA-EWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPD 572
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ R+ A M G +P +++ L
Sbjct: 573 AYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618
>gi|225442663|ref|XP_002279821.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g16010-like [Vitis vinifera]
Length = 725
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 69/158 (43%), Gaps = 2/158 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EMK +G +PD N L+S + + EA +L+ M C PDL S++I++
Sbjct: 497 DLFNEMKKLGCNPDVYAYNALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGF 556
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A+EM M N + P V L +A ++++ + KG
Sbjct: 557 ARTGGPKGAIEMFTRMK-NSKIKPDVVSYNTVLGCLSRAGMFEEAAKLMKEMNSKGFEYD 615
Query: 277 FQGYEVVVEGCLECRE-YILAGKTVMGMTERGFIPYIK 313
Y ++E + E + AG+TVM + I ++
Sbjct: 616 LITYSSILEAVGKIDEDHTPAGQTVMHIVNIKIINLVR 653
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 50/226 (22%), Positives = 97/226 (42%), Gaps = 14/226 (6%)
Query: 123 LQRTLRSGCVPVP----QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
+Q +RS CV P +I +L A + + S I ++K P T N ++
Sbjct: 147 IQEMVRSTCVIGPADLSEIVKVLGKAKMVNKALS-----IFYQIKGRKCKPTSNTYNSMI 201
Query: 179 SSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
L + ++ M + +C+PD +YS +I A + + A+ + EM N G
Sbjct: 202 LMLMQEGHHEKVHELYNEMCNEGDCLPDTVTYSALIAAFGKLGRDDSAISLFDEMKEN-G 260
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L P + + + KA+ +++ ++ KGC + Y +++G + + A
Sbjct: 261 LHPTAKIYTTILGIYFKLGRVEKALGLVQEMKEKGCALTVYTYTELIKGVGKAGKVEEAY 320
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
M M + G P + + ++ L G +LA ++ F E++S
Sbjct: 321 SIFMNMLKEGCKPDVVLINNLINLLGKAG--RLADAIKL-FEEMES 363
Score = 45.1 bits (105), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 48/203 (23%), Positives = 89/203 (43%), Gaps = 12/203 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
I + DEM E+ L P ++ Y +L + L + AL ++Q GC
Sbjct: 250 ISLFDEMKEN--GLHPTAK---IYTTILGIYFK-LGRVEKALGLVQEMKEKGCALTVYTY 303
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L + + + + I + M G PD N L++ L +L +A K+ + M
Sbjct: 304 TELIKG-VGKAGKVEEAYSIFMNMLKEGCKPDVVLINNLINLLGKAGRLADAIKLFEEME 362
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANRE 257
S +C P++ +Y+ VI A+ ++ + E + G++P I + + NR
Sbjct: 363 SLQCTPNVVTYNTVIKALFESKARASEAFLWYEKMKENGVVPSSFTYSILIDGFCKTNR- 421
Query: 258 MWKAVEMIEFLERKG---CPIGF 277
+ KA+ ++E ++ KG CP +
Sbjct: 422 VEKALLLLEEMDEKGFAPCPAAY 444
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MK G P T + L+ C +++ +A +L+ M P +Y +I A+ A+
Sbjct: 396 KMKENGVVPSSFTYSILIDGFCKTNRVEKALLLLEEMDEKGFAPCPAAYCSLINALGKAK 455
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A E+ +E+ N G + + + + R + +AV++ +++ GC Y
Sbjct: 456 RYEAANELFQELRENCGYSSARVYAVMIKHLGKCGR-LSEAVDLFNEMKKLGCNPDVYAY 514
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ G + A + M E G P + ++ G A G
Sbjct: 515 NALMSGMVRVGMTDEAHSLLRTMEENGCTPDLNSHNIILNGFARTG 560
>gi|413934354|gb|AFW68905.1| hypothetical protein ZEAMMB73_510949 [Zea mays]
Length = 845
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 76/158 (48%), Gaps = 4/158 (2%)
Query: 78 RIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ ++E ++F + R I Y+ ++S L + AL ++Q +SG VP
Sbjct: 541 RLDCVNEAYQAFAEMTSRGIVPNNITYNSIIS-ALCKAGNMTEALKLVQNMRQSGLVPDI 599
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L L R + + V ++LL+M S G PD T N ++++ C + A +
Sbjct: 600 YTSNILIDG-LCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMN 658
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
M A C PD+ +Y+I + ++ N A +++ E+V
Sbjct: 659 KMLVAGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELV 696
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 78/171 (45%), Gaps = 14/171 (8%)
Query: 136 QIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q + SA++ C+ V + EM S G P+ T N ++S+LC + EA K
Sbjct: 526 QTDFIAFSAYINGLCRLDCVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEALK 585
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVA 249
+++ M + VPD+ + +I+I + K ++M+ ++L+M GL P +
Sbjct: 586 LVQNMRQSGLVPDIYTSNILIDGLCREGK----LKMVDNLLLDMCSNGLTPDTVTYNTII 641
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGK 298
A ++M A+ + + GC Y + + CR ++L AGK
Sbjct: 642 NAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSL--CRNHMLNQAGK 690
Score = 42.4 bits (98), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M+ G PD T N L+ LC +L +L M S PD +Y+ +I A A+
Sbjct: 589 NMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQ 648
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
N A+ M +M++ G P +L N + +A ++++ L C Y
Sbjct: 649 DMNSAMNFMNKMLV-AGCEPDIFTYNIWMHSLCRNHMLNQAGKLLDELVAVDCSPNSVTY 707
Query: 281 EVVVEG-CLEC--REYILAGKTV 300
+++G C + R IL G+ +
Sbjct: 708 NTLMDGICSDVLDRAMILTGRLI 730
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 77/192 (40%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L R RSG P L R + ++ ++ EM + G P T N ++
Sbjct: 167 ALDVLARVRRSGNTPSLSALSALLRLLF-RSGEVRAAWNVFEEMTAEGPRPSLATFNAML 225
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C + A+ +L M + PD+ SY+I+I + DA +M + M + G
Sbjct: 226 LGFCHRGMVRVASGLLGIMGKSGIAPDVCSYNILIKGHCVFGWSRDAFKMFEGMHRS-GC 284
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L M +A + + + + G + + V+++G + + A
Sbjct: 285 EPTVVTYNILVDVLCHEGRMPEARRLFDEMAQVGIQVNTITFNVLIDGYAKSGQMDQASA 344
Query: 299 TVMGMTERGFIP 310
M RG +P
Sbjct: 345 AYREMQARGLVP 356
>gi|255660958|gb|ACU25648.1| pentatricopeptide repeat-containing protein [Verbena macdougalii]
Length = 348
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALYVLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + N +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|255660966|gb|ACU25652.1| pentatricopeptide repeat-containing protein [Verbena hastata]
Length = 376
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 15/162 (9%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL GM + C P++ Y+ +I ++ A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALSVLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLEC-- 290
G M +I + N +A +++ L KG G Y ++++G CL+
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKV 250
Query: 291 -REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
R L + + +GF P +++ ++ GL VG+ +LA
Sbjct: 251 ERALQLWNQVI----SKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 36/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNGMIKSGCKPNVHVYNTLINGLAGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + ++ +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQVISKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A ++ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALMIWAR 329
Score = 41.2 bits (95), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 75/171 (43%), Gaps = 2/171 (1%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L AL++L ++SGC P + L + L + + + EM ++ P T N
Sbjct: 145 LDRALSVLNGMIKSGCKPNVHVYNTLING-LAGASKFEDAIRVFREMGTMHCSPTIITYN 203
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ LC + EA ++K + P + +YS+++ + K A+++ + V++
Sbjct: 204 TLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHKVERALQLWNQ-VIS 262
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G P M + L + +M A+ + + R C + ++EG
Sbjct: 263 KGFKPDVQMHNILIHGLCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEG 313
>gi|225451352|ref|XP_002274891.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Vitis vinifera]
Length = 577
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD + + L++ C I ++ +A + + M E +P+ +YS ++ + + DA
Sbjct: 334 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 393
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV G +P + L NR + +A+ +++ +E Q Y +V++
Sbjct: 394 IALFHEMV-TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 452
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
G E A ++ +G P + ++ GL G L + F E+K
Sbjct: 453 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG---LLAEASKLFGEMK 506
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 8/227 (3%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA 156
P I +L + L L A ++L + L+ G P + L+ +E + V
Sbjct: 92 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE--VL 149
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ +M G+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I ++
Sbjct: 150 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 209
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCP 274
R+ A + EM+ + G+ P + AL N WK V + E + K P
Sbjct: 210 CKDRQVTQAFNLFSEMI-HQGISPSIFTYNSLIHAL-CNLCEWKHVTALLNEMVNSKIMP 267
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ VV+ + + + A V M +RG P + +++G
Sbjct: 268 -NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 313
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD + L+ LC +L EA +LK + + PD++ Y+IV
Sbjct: 391 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 450
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + A ++ + + GL P + L + +A ++ ++RKG
Sbjct: 451 IDGMCRAGELEAARDLFSNLS-SKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 509
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++ G L E + + + M RGF + +VE L+ G L
Sbjct: 510 YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG---LDQ 566
Query: 333 VVRQRFAEL 341
V+Q +E
Sbjct: 567 SVKQILSEF 575
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYL 177
A+L + S +P +++ S ++ C+ V D++ M G P+ T N L
Sbjct: 255 ALLNEMVNSKIMP----NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 310
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C ++ EA KV M PD+ SYS +I ++ A+ + +EM
Sbjct: 311 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC-RKE 369
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L+P + L + A+ + + +G F Y ++++ + R A
Sbjct: 370 LIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAI 429
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ + P I++ V++G+ GE + A R F+ L S
Sbjct: 430 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA---RDLFSNLSS 472
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 48 QQIPELLGSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PK-IAY 102
Q+I + + FEE C+ PN ++ + + + + + F + R + P ++Y
Sbjct: 353 QRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 412
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
LL Y ++ L A+A+L+ S P QI ++ + R + ++ D+ +
Sbjct: 413 CILLDYLCKN-RRLDEAIALLKAIEGSNMDPDIQIYTIVIDG-MCRAGELEAARDLFSNL 470
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
S G HP+ T +++ LC L EA+K+ M P+ +Y+++ +T
Sbjct: 471 SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNET 530
Query: 223 NDAVEMMKEMV 233
+++++EM+
Sbjct: 531 LRGIQLLQEML 541
>gi|224058846|ref|XP_002299640.1| predicted protein [Populus trichocarpa]
gi|222846898|gb|EEE84445.1| predicted protein [Populus trichocarpa]
Length = 609
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 56/118 (47%), Gaps = 13/118 (11%)
Query: 149 RCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+C S A D+ EMK IG +PD N L+S L + EA L+ M C PDL
Sbjct: 459 KCGRPSEAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFSALRTMEENGCTPDLN 518
Query: 208 SYSIVIGAMSTARKTNDAVEM---MKEMVLN---------MGLMPRQGMVIKVAAALR 253
S++I++ ++ + A EM MK+ ++ +G + R GM + A +R
Sbjct: 519 SHNIILNGLARTGRPEQATEMFMKMKDSLIKPDAVSYNTILGSLSRSGMFEEAAKLMR 576
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/234 (23%), Positives = 102/234 (43%), Gaps = 12/234 (5%)
Query: 75 QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
++ I++ DEM + L P ++ Y LL+ +S AL ++Q GC P
Sbjct: 218 DDYAIRLFDEMKAN--GLHPTAK---IYTTLLAIYFKSGDEK--ALGLVQEMKDKGCAPT 270
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
L L + + + + L M G PD N L++ +L +A K+
Sbjct: 271 VFTYTELIKG-LGKSGRVEDAYSVFLNMLKDGCKPDVVLINNLINIFGKAGRLEDALKLF 329
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARK-TNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAAL 252
M S +C P++ +Y+ VI A+ ++ ++A ++M N G+ P I +
Sbjct: 330 DQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKAN-GVTPSSFTYSILIDGFC 388
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ NR + KA+ ++E ++ KG P Y ++ + + Y A + + + E
Sbjct: 389 KTNR-VEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKEN 441
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 85/214 (39%), Gaps = 1/214 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + C P + A E + + A +MK+ G P T + L+
Sbjct: 325 ALKLFDQMRSLKCAPNVVTYNTVIKALFESKAPASEAASWFEKMKANGVTPSSFTYSILI 384
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C +++ +A +L+ M P +Y +I A+ A++ A E+ E+ N G
Sbjct: 385 DGFCKTNRVEKALLLLEEMDEKGFPPCPAAYCSLINALGKAKRYEAANELFLELKENCGR 444
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+ + + + R +AV++ +++ GC Y ++ G + A
Sbjct: 445 SSARIYAVMIKNLGKCGRPS-EAVDLFNEMKKIGCNPDVYAYNALMSGLVRAGMIEEAFS 503
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ M E G P + ++ GLA G + AT
Sbjct: 504 ALRTMEENGCTPDLNSHNIILNGLARTGRPEQAT 537
>gi|77556780|gb|ABA99576.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 696
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/184 (23%), Positives = 83/184 (45%), Gaps = 9/184 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +L+ + G +P ++ ++ ++ C + + D + EM G P+ T N
Sbjct: 487 AKVVLKMLMEHGFMP----DIITFTSLIDGLCNTHQLDDAFVCFEEMAEWGVRPNAQTYN 542
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC+ + +A +L M PD S++ +I + RK + A ++ +MV
Sbjct: 543 VLMHTLCSAGHVNKAIDLLNKMKIDGVTPDAYSFNALILSFCRMRKVDKAEDIFNDMV-R 601
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYI 294
G++P + AL R + KA E++ ER GC Q Y +V + ++
Sbjct: 602 FGVVPDSYTYNSLIKALCDERRVNKAKEILFARERSGCSTSNNQSYWPIVAALAKMGQFS 661
Query: 295 LAGK 298
AG+
Sbjct: 662 EAGE 665
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 22/240 (9%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
M+I ++ +C++ L +SS+ + + V A + E++ ++
Sbjct: 403 MVIKSLLNCKNFSKANHYLGHMVLKGLLSSVMSYNMVIDCFVKAGAVDKAEEIVKEMQDK 462
Query: 61 CQNPNPFSF------LSNFPQNHRIKVIDEML--ESFIPLRPRSRPKIAYDYLLSYTLQS 112
PN +F S H KV+ +ML F+P I + L+ L +
Sbjct: 463 GFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMP------DIITFTSLID-GLCN 515
Query: 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHP 169
H L A + G P Q +L + C + V D+L +MK G P
Sbjct: 516 THQLDDAFVCFEEMAEWGVRPNAQTYNVL----MHTLCSAGHVNKAIDLLNKMKIDGVTP 571
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N L+ S C + ++ +A + M VPD +Y+ +I A+ R+ N A E++
Sbjct: 572 DAYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKALCDERRVNKAKEIL 631
Score = 38.5 bits (88), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 32/166 (19%), Positives = 69/166 (41%), Gaps = 1/166 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ EM+ G+ P+ T N L+S + + A VLK + +PD+ +++ +I +
Sbjct: 454 EIVKEMQDKGFLPNLVTFNTLISGYSKLGNVHNAKVVLKMLMEHGFMPDIITFTSLIDGL 513
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +DA +EM G+ P + L + + KA++++ ++ G
Sbjct: 514 CNTHQLDDAFVCFEEMA-EWGVRPNAQTYNVLMHTLCSAGHVNKAIDLLNKMKIDGVTPD 572
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ R+ A M G +P +++ L
Sbjct: 573 AYSFNALILSFCRMRKVDKAEDIFNDMVRFGVVPDSYTYNSLIKAL 618
>gi|124360736|gb|ABN08713.1| Pentatricopeptide repeat [Medicago truncatula]
Length = 479
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/179 (21%), Positives = 85/179 (47%), Gaps = 1/179 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S + EM + G PD T L++ LC + ++ +A ++L M P + SY+ +
Sbjct: 173 ESAFRLFREMPNRGCQPDSYTYGTLINGLCKLGKISQAKELLDEMEEKGLSPSVVSYTSL 232
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + + ++A+E+++EM++N G+ P + L + +A+E++E + R+
Sbjct: 233 IHGLCQSNNLDEAIELLEEMIIN-GIEPNVFTYSSLMDGLCKSGHSSQAMELLEVMVRRR 291
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + ++ A + + M +G P + +++ GL ++ A
Sbjct: 292 LLPNMVTYSTLINGLCKEGKHREAVEILDRMRLQGLKPDAGMYGRIISGLCAACNYQEA 350
>gi|115482710|ref|NP_001064948.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|22128714|gb|AAM92826.1| putative chloroplast RNA processing protein [Oryza sativa Japonica
Group]
gi|31432837|gb|AAP54424.1| Rf1 protein, mitochondrial precursor, putative, expressed [Oryza
sativa Japonica Group]
gi|113639557|dbj|BAF26862.1| Os10g0495100 [Oryza sativa Japonica Group]
gi|125575261|gb|EAZ16545.1| hypothetical protein OsJ_32018 [Oryza sativa Japonica Group]
Length = 461
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/213 (20%), Positives = 89/213 (41%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +++G +P + + + ++++ L M S G PD TCN L+
Sbjct: 246 AMEVLNTMVKNGVMPNCRTYNSIVHGYCSSGQLTEAIG-FLKMMCSDGVEPDVVTCNLLM 304
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + EA K+ M+ PD+ +Y ++ +T + +++ MV N G+
Sbjct: 305 DYLCKNRRCTEARKIFNSMTKCGLKPDITTYCTLLQGYATKGALVEMHDLLDLMVWN-GI 363
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + A ++ +A+ + + ++G Y V++ + A
Sbjct: 364 QPNHHVFNILICAYAKQEKVDEAMLVFSKMRQQGLSPNAVNYRTVIDVLCKLGRVYDAVL 423
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
T+ M G P I V ++ G +W+ A
Sbjct: 424 TLKQMINEGLTPDIIVYTPLIHGFCTCDKWEKA 456
Score = 42.0 bits (97), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 88/208 (42%), Gaps = 6/208 (2%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLV 178
+L R + GC+P V +LL E R SQ ++L M G PD N ++
Sbjct: 142 VLCRMTQLGCIPNVFSCTILLKGLCDENR--SQEALELLQMMPDDGGDCPPDVVLYNTVI 199
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ +A M +PD+ +YS +I A+ A+ + A+E++ MV N G+
Sbjct: 200 NGFFKEGDPDKAYATYHEMFDQGILPDVVTYSSIIAALCKAQAMDKAMEVLNTMVKN-GV 258
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
MP + ++ ++ +A+ ++ + G ++++ + R A K
Sbjct: 259 MPNCRTYNSIVHGYCSSGQLTEAIGFLKMMCSDGVEPDVVTCNLLMDYLCKNRRCTEARK 318
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVG 326
MT+ G P I +++G A G
Sbjct: 319 IFNSMTKCGLKPDITTYCTLLQGYATKG 346
>gi|32489921|emb|CAE05513.1| OSJNBa0038P21.6 [Oryza sativa Japonica Group]
Length = 648
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 4/210 (1%)
Query: 118 LALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
LALA+ R LR+G P V L+ + + ++ +M PD T N
Sbjct: 47 LALAVFGRLLRTGLGPDVCSYNTLIDG--FSKEGEVDKAYELFYKMIEQSVSPDVVTYNS 104
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L+ LC ++V++ +VL+ M A P+ ++Y+ +I STA ++V + KEM +
Sbjct: 105 LIDGLCKTKEMVKSERVLEQMVDAGIRPNNKTYNSLIYGYSTAGMWKESVRVFKEMS-SS 163
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
GL+P AL + + +A ++ + + KG Y ++ G +
Sbjct: 164 GLIPCVVNCNSFIHALCRHNRIKEAKDIFDSMVLKGPKPNIISYSTLLHGYAAEGCFANM 223
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
V M +G +P + ++ A G
Sbjct: 224 NSLVNLMVSKGIVPNHRFFNILINAYARCG 253
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 78/172 (45%), Gaps = 4/172 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ N L+++ + +A + + M + +PD +++ VI ++ +
Sbjct: 230 MVSKGIVPNHRFFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSLCRIGR 289
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGY 280
+DA+ MV ++G+ P + + + + E+ KA E+I E + + P G + +
Sbjct: 290 LDDALHKFNHMV-DIGVPPSEAVYRCLIQGCCNHGELVKAKELISEMMNKDIPPPGVKYF 348
Query: 281 EVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ + + GK +M M + G P + ++EG VG + A
Sbjct: 349 SSIINNLFK-EGRVAEGKDIMDLMVQTGQRPNVVTFNSLMEGYCLVGNMEEA 399
>gi|255541714|ref|XP_002511921.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223549101|gb|EEF50590.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 248
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/198 (23%), Positives = 84/198 (42%), Gaps = 4/198 (2%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
LR GC P + L S + R + A +L ++K G+ PD N L+ C ++
Sbjct: 2 LRDGCTPDAMVYYKLISGLSQAR-RMDDAASVLTKLKEAGFCPDIVCYNILIGGFCNKNR 60
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L +A ++L M A PD +Y+ +I A MMK+M+ + GL P
Sbjct: 61 LDKAREMLNDMEEAGLEPDTITYNTLISYFGKIGDIKVAHRMMKQMIKD-GLQPTVVTYG 119
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQG--YEVVVEGCLECREYILAGKTVMGMT 304
+ A N + +A+++ + ++ + Y ++++ E + LA + M
Sbjct: 120 SLIHAYCLNGNVDEAMKIFKAMDAAASRVAPNNVIYNILIDSLCENNDIELALSLMDDMR 179
Query: 305 ERGFIPYIKVRQKVVEGL 322
+G P + +GL
Sbjct: 180 VKGVKPNTGTYNAMFKGL 197
>gi|296083865|emb|CBI24253.3| unnamed protein product [Vitis vinifera]
Length = 582
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 75/168 (44%), Gaps = 5/168 (2%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ LC + EA +++ M PD+ SY+ +I + A+K +AV ++ EM
Sbjct: 2 NIVLKGLCRNGGVFEAMGLIREMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEA 61
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
G P + L + M +A+E++E +++KG Y ++ G C
Sbjct: 62 -AGCFPNSVTCTTLMDGLCKDGRMDEAMELLEAMKKKGFDADVVLYGTLISGF--CNNGN 118
Query: 295 LA-GKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
L GK + M +G + +V GL +G+WK A V AE
Sbjct: 119 LDRGKELFDEMLGKGISANVVTYSCLVHGLCRLGQWKEANTVLNAMAE 166
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 70/166 (42%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM PD + N L++ LC +L EA +L M +A C P+ + + ++ +
Sbjct: 23 EMGRKSVSPDIVSYNTLINGLCKAKKLKEAVGLLLEMEAAGCFPNSVTCTTLMDGLCKDG 82
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A+E+++ M G + + + N + + E+ + + KG Y
Sbjct: 83 RMDEAMELLEAMK-KKGFDADVVLYGTLISGFCNNGNLDRGKELFDEMLGKGISANVVTY 141
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+V G ++ A + M E G P + +++GL G
Sbjct: 142 SCLVHGLCRLGQWKEANTVLNAMAEHGIHPDVVTYTGLIDGLCKDG 187
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 40/188 (21%), Positives = 84/188 (44%), Gaps = 4/188 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L M G P T N L+S LC +++A K+L+ M D+ +Y+ ++ +
Sbjct: 194 DLLNLMVEKGEEPSNVTYNVLLSGLCKEGLVIDAFKILRMMIEKGKKADVVTYNTLMKGL 253
Query: 217 STARKTNDAVEMMKEMVLNMG-LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
K ++A+++ M N L P + L + KAV++ + +KG
Sbjct: 254 CDKGKVDEALKLFNSMFDNENCLEPNVFTFNMLIGGLCKEGRLTKAVKIHRKMVKKGSCG 313
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335
Y +++ GCL+ + A + + + GF+P +++G + ++ + +
Sbjct: 314 NLVTYNMLLGGCLKAGKIKEAMELWKQVLDLGFVPNSFTYSILIDGFC---KMRMLNIAK 370
Query: 336 QRFAELKS 343
F E+++
Sbjct: 371 GLFCEMRT 378
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/218 (20%), Positives = 92/218 (42%), Gaps = 13/218 (5%)
Query: 64 PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAI 122
PN F++ ++++++ F +R +DY L +L L A ++
Sbjct: 348 PNSFTYSILIDGFCKMRMLNIAKGLFCEMRTHGLNPALFDYNTLMASLCKEGSLEQAKSL 407
Query: 123 LQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
Q + C P + ++ + Q V ++ ++M +G PD T + L++ L
Sbjct: 408 FQEMGNANCEPDIISFNTMIDGTL--KAGDFQFVKELQMKMVEMGLRPDALTFSTLINRL 465
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ +L EA L+ M ++ PD Y ++ +S+ T + + ++ +M ++ R
Sbjct: 466 SKLGELDEAKSALERMVASGFTPDALVYDSLLKGLSSKGDTTEIINLLHQMAAKGTVLDR 525
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ V+ L + V+++E L P FQG
Sbjct: 526 K----IVSTILTCLCHSIQEVDVMELL-----PTFFQG 554
>gi|224107985|ref|XP_002314678.1| predicted protein [Populus trichocarpa]
gi|222863718|gb|EEF00849.1| predicted protein [Populus trichocarpa]
Length = 497
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 1/115 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM+ G+HPD + + +++ C V M C P++ +Y+ V+ A+
Sbjct: 248 IMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVFDEMQEKGCKPNVITYTTVMHALG 307
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
AR+ N+A+E+ ++M N G +P + L + + A ++ E +E++G
Sbjct: 308 KARQLNEALEVYEKMKRN-GCLPDSKFYSSLIYVLSQSGRIKDAWDVFEDMEKQG 361
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
V DEM E +P + + + L L AL + ++ R+GC+P +
Sbjct: 283 VFDEMQEK------GCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGCLPDSKFYSS 336
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L L + + + D+ +M+ G + N ++SS CA Q A K+L+ M
Sbjct: 337 LIYV-LSQSGRIKDAWDVFEDMEKQGVCRNLWVYNTMISSACAHSQGGSALKLLERMEGD 395
Query: 201 ECVPDLESYS 210
C PD+++Y+
Sbjct: 396 SCKPDVKTYA 405
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 29/104 (27%), Positives = 45/104 (43%), Gaps = 1/104 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N L+ C V A K+++ M PD+ SYS I A + + +
Sbjct: 225 DSSSFNILIHGYCKARMFVVARKIMEEMEKHGFHPDVVSYSCFIAAYCEQKDFRNVEAVF 284
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
EM G P V AL R++ +A+E+ E ++R GC
Sbjct: 285 DEM-QEKGCKPNVITYTTVMHALGKARQLNEALEVYEKMKRNGC 327
>gi|302770561|ref|XP_002968699.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
gi|300163204|gb|EFJ29815.1| hypothetical protein SELMODRAFT_61973 [Selaginella moellendorffii]
Length = 544
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/222 (19%), Positives = 86/222 (38%), Gaps = 36/222 (16%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q+ ++ E+ GY P+ T + +++ C +D++ EA +V M + CVP+ +++
Sbjct: 223 QTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEVFMKMIESNCVPNAVTFN 282
Query: 211 IVIGAMSTARKTNDAVEMMKEM-----------------------------------VLN 235
+I A DA+++ EM +
Sbjct: 283 TLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLCKKRGGVYTAVDLFNKLEG 342
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL P + R + +A++ + +E K C Y ++++G + R
Sbjct: 343 AGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGK-CAPNVITYSILIDGLCKVRRMKE 401
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
A KT+ M G+ P + ++ G GE K A + ++
Sbjct: 402 AAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEK 443
Score = 46.6 bits (109), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 58/113 (51%), Gaps = 10/113 (8%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
L AL ++ +GC P ++ + ++ C+++ D +L M + G PD
Sbjct: 434 LKSALLFFEKMKLAGCAP----NTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVI 489
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
T N L+S LC+ +++ +A ++ GM+ C P++ +++ +I + +K +A
Sbjct: 490 TYNCLISGLCSANRVEDAQRLFDGMA---CAPNVTTFNFLIRGLCAQKKVEEA 539
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 41/82 (50%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +MKS G P+ T N L+ LC I Q+ A K+ + M + +P S++
Sbjct: 47 QMHQAVSVFSDMKSSGLLPNASTMNTLLLGLCEIGQMSSALKLFREMQAGPFLPTSASHN 106
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
I++ A + DA+ +++M
Sbjct: 107 ILLRGFFMAGRVRDALAHLQDM 128
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 63/155 (40%), Gaps = 2/155 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ C I Q EA ++K + A P++ +YSI+I K +A E+
Sbjct: 206 PDIMTYNVLMDGYCKIGQTYEAQSLMKEILKAGYEPNVFTYSIIINCYCKLDKVEEAWEV 265
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+M+ +P + A + A+++ +E+ GC Y +++
Sbjct: 266 FMKMI-ESNCVPNAVTFNTLIAGFCKAGMLEDAIKLFAEMEKIGCKATIVTYNTLIDSLC 324
Query: 289 ECREYILAGKTVMGMTE-RGFIPYIKVRQKVVEGL 322
+ R + + E G P I +++G
Sbjct: 325 KKRGGVYTAVDLFNKLEGAGLTPTIVTYNSLIQGF 359
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 37/80 (46%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ A L +MK+ GY P T L++ C +L A + M A C P+ ++ +
Sbjct: 400 KEAAKTLEDMKAHGYTPTVVTYGGLINGFCKCGELKSALLFFEKMKLAGCAPNTVIFNTL 459
Query: 213 IGAMSTARKTNDAVEMMKEM 232
I + A + ND + ++ M
Sbjct: 460 IDGLCKAERANDGLRLLCHM 479
Score = 38.5 bits (88), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 36/184 (19%), Positives = 72/184 (39%), Gaps = 7/184 (3%)
Query: 52 ELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111
+L E A P ++ S + + E ++ F + + P + +L L
Sbjct: 335 DLFNKLEGAGLTPTIVTYNSLIQGFCDARRLSEAMQYFDEMEGKCAPNVITYSILIDGLC 394
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYH 168
+ + A L+ G P ++ + C+ + LL +MK G
Sbjct: 395 KVRRMKEAAKTLEDMKAHGYTPT----VVTYGGLINGFCKCGELKSALLFFEKMKLAGCA 450
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ N L+ LC ++ + ++L M + C PD+ +Y+ +I + +A + DA +
Sbjct: 451 PNTVIFNTLIDGLCKAERANDGLRLLCHMHAEGCKPDVITYNCLISGLCSANRVEDAQRL 510
Query: 229 MKEM 232
M
Sbjct: 511 FDGM 514
>gi|242067349|ref|XP_002448951.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
gi|241934794|gb|EES07939.1| hypothetical protein SORBIDRAFT_05g002310 [Sorghum bicolor]
Length = 799
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/259 (22%), Positives = 108/259 (41%), Gaps = 13/259 (5%)
Query: 82 IDEMLESFIPLRPRSRPKI--AYDYLLSYTLQSL--HPLPLALAILQRTLRSGCVPVPQI 137
+D+ L+ F L +RP A+++LL+ ++ LA++ R +R C
Sbjct: 30 LDDALKLFDELLHHARPASVRAFNHLLTAVSRARCSSASELAVSHFNRMVRE-CSDKVAP 88
Query: 138 RLLLSSAWLERRCQ----SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
L S + R C+ A L +K+ G+ D N L+ LC ++ EA V
Sbjct: 89 NLCTYSILIGRFCRMGHLEHGFAAFGLILKT-GWRMDHIAINQLLKGLCHGKRVGEAMDV 147
Query: 194 L-KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM--PRQGMVIKVAA 250
L + M C+PD SY+I++ + ++ +A+E++ M + G P V
Sbjct: 148 LLQRMPELGCMPDTVSYTILLKGLCNEKRAEEALELLHMMADDHGRRCPPNVVSYSIVIN 207
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
++ K + + +G P Y V++G + + + A M + GF P
Sbjct: 208 GFFTEGQVDKPYNLFLEMIDRGIPPDVVTYTTVIDGLCKAQLFDRAEGVFQQMIDNGFKP 267
Query: 311 YIKVRQKVVEGLAGVGEWK 329
++ G +G+WK
Sbjct: 268 NNYTYNCLIHGYLSIGKWK 286
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/213 (23%), Positives = 83/213 (38%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + Q+ + +G P L +L + + V +L EM + G PDC T L+
Sbjct: 253 AEGVFQQMIDNGFKPNNYTYNCLIHGYLSIG-KWKEVVQMLEEMSARGLKPDCYTYGSLL 311
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC + EA M P + +Y I+I +T ++ + MV N GL
Sbjct: 312 NYLCKNGRCREARFFFDSMIRKGIKPKVSTYGILIHGYATKGALSEMHSFLDLMVEN-GL 370
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + +A + KA+++ + + G Y +++ + A
Sbjct: 371 SPDHHIFNIFFSAYAKCGMIDKAMDIFNKMRQHGLSPNVVNYGALIDALCKLGRVDDAEV 430
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G P I V +V GL V +W+ A
Sbjct: 431 KFNQMINEGVTPNIVVFNSLVYGLCTVDKWERA 463
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 61/264 (23%), Positives = 110/264 (41%), Gaps = 17/264 (6%)
Query: 53 LLGSFEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYL 105
L+ E P+ FS+ +S + R KV D M+ I L P ++ Y+ L
Sbjct: 501 LIDLMEHVGVRPDAFSYTPLISGYCLTGRTDEAEKVFDGMVS--IGLSP---TEVTYNTL 555
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
L + S + A + + LR G P V +L + +R ++ L M +
Sbjct: 556 L-HGYCSASRIDDAYCLFREMLRKGVTPGVVTYNTILHGLFQTKR--FSEAKELYLNMIN 612
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G D T N +++ LC + + EA K+ + + S ++ +++I+IGA+ + D
Sbjct: 613 SGTKCDIYTYNIILNGLCKSNCVDEAFKMFQSLCSKGLQLNIITFTIMIGALLKGGRKED 672
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+++ + N GL+P VA L + + + +E+ G Q +V
Sbjct: 673 AMDLFAAIPAN-GLVPNVVTYRLVAENLIEEGSLEEFDSLFSAMEKNGTAPNSQMLNALV 731
Query: 285 EGCLECREYILAGKTVMGMTERGF 308
L + AG + + ER F
Sbjct: 732 RRLLHRGDISRAGAYLSKLDERNF 755
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 72/166 (43%), Gaps = 1/166 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ EM G P+ N L+ +LC + +++E +++ M PD SY+ +I
Sbjct: 465 ELVYEMLDQGICPNAVFFNTLICNLCNVGRVMEGRRLIDLMEHVGVRPDAFSYTPLISGY 524
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+T++A ++ MV ++GL P + + + + A + + RKG G
Sbjct: 525 CLTGRTDEAEKVFDGMV-SIGLSPTEVTYNTLLHGYCSASRIDDAYCLFREMLRKGVTPG 583
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ G + + + A + + M G I ++ GL
Sbjct: 584 VVTYNTILHGLFQTKRFSEAKELYLNMINSGTKCDIYTYNIILNGL 629
>gi|147771991|emb|CAN69054.1| hypothetical protein VITISV_022964 [Vitis vinifera]
Length = 586
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/177 (22%), Positives = 78/177 (44%), Gaps = 4/177 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD + + L++ C I ++ +A + + M E +P+ +YS ++ + + DA
Sbjct: 343 GFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDA 402
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV G +P + L NR + +A+ +++ +E Q Y +V++
Sbjct: 403 IALFHEMV-TRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIVID 461
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
G E A ++ +G P + ++ GL G L + F E+K
Sbjct: 462 GMCRAGELEAARDLFSNLSSKGLHPNVWTYTIMINGLCQQG---LLAEASKLFGEMK 515
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/227 (22%), Positives = 95/227 (41%), Gaps = 8/227 (3%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA 156
P I +L + L L A ++L + L+ G P + L+ +E + V
Sbjct: 101 PNIYTLNILINSFCHLQRLGFAFSVLAKILKLGHQPNIATFNTLIRGLCVEGKIGE--VL 158
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ +M G+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I ++
Sbjct: 159 HLFDKMIGEGFQPNVVTYGTLINGLCKVGSTSAAIRLLRSMEQGNCQPDVVVYTSIIDSL 218
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCP 274
R+ A + EM+ + G+ P + AL N WK V + E + K P
Sbjct: 219 CKDRQVTQAFNLFSEMI-HQGISPSIFTYNSLIHAL-CNLCEWKHVTALLNEMVNSKIMP 276
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ VV+ + + + A V M +RG P + +++G
Sbjct: 277 -NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNALMDG 322
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/189 (24%), Positives = 80/189 (42%), Gaps = 4/189 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q + EM + G PD + L+ LC +L EA +LK + + PD++ Y+IV
Sbjct: 400 QDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAIALLKAIEGSNMDPDIQIYTIV 459
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I M A + A ++ + + GL P + L + +A ++ ++RKG
Sbjct: 460 IDGMCRAGELEAARDLFSNLS-SKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKG 518
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++ G L E + + + M RGF + +VE L+ G L
Sbjct: 519 YSPNGCTYNLITRGFLRNNETLRGIQLLQEMLARGFSADVSTSTVLVEMLSDDG---LDQ 575
Query: 333 VVRQRFAEL 341
V+Q +E
Sbjct: 576 SVKQILSEF 584
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 49/226 (21%), Positives = 92/226 (40%), Gaps = 11/226 (4%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYL 177
A+L + S +P +++ S ++ C+ V D++ M G P+ T N L
Sbjct: 264 ALLNEMVNSKIMP----NVVIFSTVVDALCKEGKVMEAHDVVDMMIKRGVEPNVVTYNAL 319
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C ++ EA KV M PD+ SYS +I ++ A+ + +EM
Sbjct: 320 MDGHCLRSEMDEAVKVFDTMVCKGFAPDVVSYSTLINGYCKIQRIEKAMYLFEEMC-RKE 378
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L+P + L + A+ + + +G F Y ++++ + R A
Sbjct: 379 LIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSYCILLDYLCKNRRLDEAI 438
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ + P I++ V++G+ GE + A R F+ L S
Sbjct: 439 ALLKAIEGSNMDPDIQIYTIVIDGMCRAGELEAA---RDLFSNLSS 481
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 88/191 (46%), Gaps = 7/191 (3%)
Query: 48 QQIPELLGSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PK-IAY 102
Q+I + + FEE C+ PN ++ + + + + + F + R + P ++Y
Sbjct: 362 QRIEKAMYLFEEMCRKELIPNTVTYSTLMHGLCHVGRLQDAIALFHEMVTRGQIPDFVSY 421
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
LL Y ++ L A+A+L+ S P QI ++ + R + ++ D+ +
Sbjct: 422 CILLDYLCKN-RRLDEAIALLKAIEGSNMDPDIQIYTIVIDG-MCRAGELEAARDLFSNL 479
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
S G HP+ T +++ LC L EA+K+ M P+ +Y+++ +T
Sbjct: 480 SSKGLHPNVWTYTIMINGLCQQGLLAEASKLFGEMKRKGYSPNGCTYNLITRGFLRNNET 539
Query: 223 NDAVEMMKEMV 233
+++++EM+
Sbjct: 540 LRGIQLLQEML 550
>gi|15218284|ref|NP_172453.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75276860|sp|O04504.1|PPR27_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g09820
gi|2160173|gb|AAB60736.1| Similar to N. tabacum salt-inducible protein (gb|U08285)
[Arabidopsis thaliana]
gi|332190378|gb|AEE28499.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 606
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T N L++ C D L EA + + VP Y+++I A
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +D + +EM G++P G + A L N + A ++ + L KG P +
Sbjct: 416 KIDDGFALKEEMERE-GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTF 473
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+++EG E A + M++ G P V++G G K AT +R +
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
>gi|357499659|ref|XP_003620118.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
gi|355495133|gb|AES76336.1| Pentatricopeptide repeat protein-like protein [Medicago truncatula]
Length = 841
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 88/211 (41%), Gaps = 8/211 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
AL +L+R G + P + ++ + ++ C+ + V D + E S PD T N
Sbjct: 317 ALELLRRN--DGKLVQPDV--VMYNTIIDGMCKDKHVNDAFDLYSEKVSKRIFPDVFTYN 372
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S C + +L +A + M+S +PD+ ++SI++ +A ++ M++
Sbjct: 373 ALISGFCIVGKLKDAIDLFNKMTSKNIIPDVYTFSILVDGFCKDGNIKEAKNVL-AMMMK 431
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + E+ KA + + +G Q Y +++ G + +
Sbjct: 432 QSIKPDVVTYSSLMDGYCLVNEVNKAESIFNTMSHRGVTANVQSYNIMINGFCKIKMVDE 491
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A K M + P + +++GL G
Sbjct: 492 AMKLFKEMHHKQIFPDVITYSSLIDGLCKSG 522
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 34/171 (19%), Positives = 83/171 (48%), Gaps = 6/171 (3%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S+ ++ C+S ++ +++ EM G PD T N ++ +LC + +A +L +
Sbjct: 512 SSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKHHVDKAITLLTKLKG 571
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +Y+I++ + + K DA ++ +++++ + + + ++ ++
Sbjct: 572 QGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGF--CDKGLF 629
Query: 260 -KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+A+ ++ +E GC + YE+++ E E +A K + M RG +
Sbjct: 630 DEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMAEKLLREMIMRGLL 680
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 78/183 (42%), Gaps = 1/183 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I M G + + N +++ C I + EA K+ K M + PD+ +YS +I +
Sbjct: 460 IFNTMSHRGVTANVQSYNIMINGFCKIKMVDEAMKLFKEMHHKQIFPDVITYSSLIDGLC 519
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + + A+E++ EM G P + AL + KA+ ++ L+ +G
Sbjct: 520 KSGRISYALELVDEMHYR-GQQPDIITYNSILDALCKKHHVDKAITLLTKLKGQGIRPDM 578
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y ++V+G + + A K + +G+ + +++G G + A + +
Sbjct: 579 NTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAYTVMIQGFCDKGLFDEALALLSK 638
Query: 338 FAE 340
E
Sbjct: 639 MEE 641
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 73/171 (42%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM PD T + L+ LC ++ A +++ M PD+ +Y+ ++ A+
Sbjct: 498 EMHHKQIFPDVITYSSLIDGLCKSGRISYALELVDEMHYRGQQPDIITYNSILDALCKKH 557
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A+ ++ ++ G+ P + L + ++ A ++ E L KG + Y
Sbjct: 558 HVDKAITLLTKLK-GQGIRPDMNTYTILVKGLCQSGKLEDARKVFEDLLVKGYNLDVYAY 616
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
V+++G + + A + M E G IP K + ++ L E +A
Sbjct: 617 TVMIQGFCDKGLFDEALALLSKMEENGCIPDAKTYEIIILSLFEKDENDMA 667
>gi|295831111|gb|ADG39224.1| AT5G43820-like protein [Neslia paniculata]
Length = 169
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/140 (22%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I ++ G PD N ++ + + + + + M EC P+
Sbjct: 10 LGRAGRINDSVEIFDNIRHKGNVPDANVYNAMICNFISARDFDGSMRYYRRMLDEECEPN 69
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G++P G++ L + A+ +
Sbjct: 70 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGVLPTTGLITSFLKPLCSYGPPHAAMVIY 128
Query: 266 EFLERKGCPIGFQGYEVVVE 285
+ + GC I Y+++++
Sbjct: 129 QKSRKAGCRISESAYKLLLK 148
>gi|147788269|emb|CAN69960.1| hypothetical protein VITISV_032887 [Vitis vinifera]
Length = 472
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 139 LLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ + ++ C +++ A LLE + G+ PDC N ++ C +D+ EA V K
Sbjct: 239 LVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYK 298
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M PDL +Y+ +I +S + + +A + + +++ MG P + L
Sbjct: 299 KMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFL-DIMAEMGHFPDAVTYTSLMNGLCRE 357
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
A+ ++E +E KGC Y ++ G + R
Sbjct: 358 GNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLR 393
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 45/209 (21%), Positives = 83/209 (39%), Gaps = 10/209 (4%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+LLS + +V L M + G+ PD T + V SLC+ + A +++K +
Sbjct: 135 HILLSQSCKSPNSDLSAVHQTLNLMVTHGFPPDRVTTDIAVRSLCSAGREEHAIELVKEL 194
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
S PD +Y+ +I + R + + E+ + L P + + +
Sbjct: 195 SLKHSPPDSFTYNFIIRHLCKTRALSTVYNFIDELQNSFQLKPDLVTYTILIDNVCNGKN 254
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG----MTERGFIPYI 312
+ +A ++E L G Y +++G C+ + G +G M E G P +
Sbjct: 255 LREATRLLEVLGEAGFKPDCYVYNTIMKGYCI-----LDKGSEAIGVYKKMKEEGVEPDL 309
Query: 313 KVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL+ G K A AE+
Sbjct: 310 VTYNTLIFGLSKSGRVKEARKFLDIMAEM 338
>gi|357498969|ref|XP_003619773.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494788|gb|AES75991.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 452
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 1/168 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ + Q +A V M+ PD+ SYS++I + + ++AV +
Sbjct: 222 PDVITYNSLMDGYFLVKQENKATFVFNTMARRGVTPDVHSYSVMINGLCKTKMVDEAVNL 281
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+KEM + + P + L + ++ A +++ + +G P Y +++
Sbjct: 282 LKEM-HSKSMAPNTVTYSSLIDGLHKSGRIFDAWDLVNEMHNRGQPADVITYNSLLDALC 340
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
+ + A + + ++G P I +V+GL G K A V Q
Sbjct: 341 KNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGLCKNGRLKDAQEVYQ 388
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 15/153 (9%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D++ EM + G D T N L+ +LC Q+ +A +L + PD+ +Y+I++ +
Sbjct: 315 DLVNEMHNRGQPADVITYNSLLDALCKNHQVDKAITLLTKIKDQGIQPDIYTYTILVDGL 374
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ DA E+ Q ++IK + KA+ ++ +E GC
Sbjct: 375 CKNGRLKDAQEV------------YQILLIK---GYHLDSLFDKALSLLSKMEDNGCTPN 419
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+E+++ E A + + M RG +
Sbjct: 420 PVTFEILIRALFENDMNDKAVELLREMIARGLL 452
>gi|356561387|ref|XP_003548963.1| PREDICTED: pentatricopeptide repeat-containing protein At1g62670,
mitochondrial-like [Glycine max]
Length = 520
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/199 (19%), Positives = 85/199 (42%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C+ V ++L M G PD + L+ C + ++ +A ++ M
Sbjct: 224 NTLIDTLCKEGKVKESKNLLAVMTKKGVKPDVVIYSILMDGYCLVGEVQKAKQIFLVMVQ 283
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ SY+I+I + ++ ++A+ +++EM L+ ++P + L +
Sbjct: 284 TGVNPDVYSYNIIINGLCKGKRVDEAMNLLREM-LHKNMIPDTVTYSSLIDGLCKLGRIT 342
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+++ + + +G P Y +++G + + A M M ERG P ++
Sbjct: 343 TILDLTKEMHHRGQPANLVTYNSLLDGLCKNQNLDKAIALFMKMKERGIQPNKYTYTALI 402
Query: 320 EGLAGVGEWKLATVVRQRF 338
+GL G K + Q
Sbjct: 403 DGLCKGGRLKKGQALFQHL 421
>gi|302821471|ref|XP_002992398.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
gi|300139814|gb|EFJ06548.1| hypothetical protein SELMODRAFT_135281 [Selaginella moellendorffii]
Length = 698
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 73/155 (47%), Gaps = 4/155 (2%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
+ +L+ ++G P + +++++ R+ + +A +M+ G PD + N L
Sbjct: 406 GVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIA--FFKMQDGGIEPDVVSWNSL 463
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + C Q +EA K+ M + C P ++++IVI + ++ ND EM++EM + G
Sbjct: 464 IDACCKAGQPLEARKLYYKMVNDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEM-RSKG 522
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ P + R AVE ++ ++ G
Sbjct: 523 MFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDG 557
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 40/160 (25%), Positives = 66/160 (41%), Gaps = 1/160 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q Q +L EM+ G PD N ++++ QL +A M PD+ S++
Sbjct: 402 QWQKGVKLLREMQQAGVTPDAHVYNVIINTFGRTRQLEQARIAFFKMQDGGIEPDVVSWN 461
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I A A + +A ++ +MV N G P V L ++ EM+E +
Sbjct: 462 SLIDACCKAGQPLEARKLYYKMV-NDGCAPTAQTFNIVIHGLGEHKRWNDVNEMVEEMRS 520
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
KG Y +V+ + R + A + + M E G P
Sbjct: 521 KGMFPNVVTYTTLVDVYAQARLFQDAVECLQTMKEDGMGP 560
>gi|168047804|ref|XP_001776359.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162672319|gb|EDQ58858.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 499
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/243 (20%), Positives = 108/243 (44%), Gaps = 9/243 (3%)
Query: 82 IDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+++ L+ F+ ++ R RP I Y ++ +S H + A + + G V R+
Sbjct: 175 VEKALKVFLDMKSRGCRPNIFTYTSMIDGLGKSGH-VDKAFFLFEEMTSEGLVAT---RV 230
Query: 140 LLSS--AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+ +S L R ++ + A + EM S G PD T LV L + EA ++ +
Sbjct: 231 VYNSLIHGLGRSGRADAAAKLFREMLSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEA 290
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
C D+ Y+++I + +++ ++A E+ E+ + GL+P + L +
Sbjct: 291 RDVGCALDVNLYNVLIDTLCKSKRLDEAWEIFGELEED-GLVPDVYTFNALMDGLCKSGR 349
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A ++ ++R GC Y +++G + AG+ ++ M G+ P +
Sbjct: 350 IHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEAGQLLLEMQSLGYEPDVVTYNT 409
Query: 318 VVE 320
+++
Sbjct: 410 LID 412
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 57/114 (50%), Gaps = 2/114 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L R+GC P + L L + + + +LLEM+S+GY PD T N L+
Sbjct: 353 AFILLGDMKRAGCTPDVTVYNTLIDG-LRKSGRVEEAGQLLLEMQSLGYEPDVVTYNTLI 411
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C ++ +A ++ + + SA+ + +Y+ ++ + A + ++A ++ M
Sbjct: 412 DESCKGGRIEDALRLFEEI-SAKGFANTVTYNTILNGLCMAGRVDEAYKLFNGM 464
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 71/169 (42%), Gaps = 1/169 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ L+MKS G P+ T ++ L + +A + + M+S V Y+ +I +
Sbjct: 181 VFLDMKSRGCRPNIFTYTSMIDGLGKSGHVDKAFFLFEEMTSEGLVATRVVYNSLIHGLG 240
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + + A ++ +EM L+ GL P + L +A + + GC +
Sbjct: 241 RSGRADAAAKLFREM-LSKGLQPDHVTFTSLVYGLGVAGRASEARRIFQEARDVGCALDV 299
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V+++ + + A + + E G +P + +++GL G
Sbjct: 300 NLYNVLIDTLCKSKRLDEAWEIFGELEEDGLVPDVYTFNALMDGLCKSG 348
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
VP + +A ++ C+S + D +L +MK G PD N L+ L ++ EA
Sbjct: 331 VPDVYTF--NALMDGLCKSGRIHDAFILLGDMKRAGCTPDVTVYNTLIDGLRKSGRVEEA 388
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++L M S PD+ +Y+ +I + DA+ + +E+
Sbjct: 389 GQLLLEMQSLGYEPDVVTYNTLIDESCKGGRIEDALRLFEEI 430
>gi|224136366|ref|XP_002326842.1| predicted protein [Populus trichocarpa]
gi|222835157|gb|EEE73592.1| predicted protein [Populus trichocarpa]
Length = 726
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 83/181 (45%), Gaps = 7/181 (3%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPLPLAL 120
+P+ +F + + ++DE + F+ + + Y+ L+ S L AL
Sbjct: 461 HPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNS-GRLQEAL 519
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+ + R G +P + ++++ E R +S S D+ M G PD T N L+
Sbjct: 520 MLEREMARKGLLPDIFTTNIIINGLCKEGRMKSAS--DVFRNMHHTGLIPDIVTYNTLID 577
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
C V +V+ M + PD+ +Y+I + + T RK + AV M++E++ + G++
Sbjct: 578 GYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGLCTGRKMSRAVMMLEELI-SAGVV 636
Query: 240 P 240
P
Sbjct: 637 P 637
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 34/162 (20%), Positives = 64/162 (39%), Gaps = 1/162 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G HPD + ++ L + + EA V MS +P+ Y+ +I +
Sbjct: 454 EMEGRGIHPDAVAFSAFINGLSIVGLVDEAYDVFLQMSKKGFMPNNFVYNSLIRGFCNSG 513
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A+ + +EM GL+P + L M A ++ + G Y
Sbjct: 514 RLQEALMLEREMA-RKGLLPDIFTTNIIINGLCKEGRMKSASDVFRNMHHTGLIPDIVTY 572
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++G + + + + V M G+ P I + GL
Sbjct: 573 NTLIDGYCKAFDTVSTDEVVNKMYATGWDPDITTYNIRLHGL 614
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 43/174 (24%), Positives = 69/174 (39%), Gaps = 2/174 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I+ R G P +L L R SV +L M G P N ++
Sbjct: 98 ALEIVGRMREVGLRPSSSAITILFKLLL-RIGDHGSVWKLLRGMIHQGPRPCNRNFNAVI 156
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C + +L M +C PD+ +Y+I+I A T +T DA+ M+ M+ N G
Sbjct: 157 LGFCRKGHVKVGESLLCVMQKFKCQPDVYAYNILINAYCTRGQTFDALGWMRFMIDN-GC 215
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
P V A M +A + + ++ G Y ++ G ++ R+
Sbjct: 216 TPSLVTFGTVINAFCNQGNMMEARNLFDGMKEAGHIPNVVCYNTLMNGYVKARD 269
>gi|297723459|ref|NP_001174093.1| Os04g0618050 [Oryza sativa Japonica Group]
gi|222629567|gb|EEE61699.1| hypothetical protein OsJ_16179 [Oryza sativa Japonica Group]
gi|255675780|dbj|BAH92821.1| Os04g0618050 [Oryza sativa Japonica Group]
Length = 363
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 79/176 (44%), Gaps = 4/176 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ D +L EM G P+ T + L++ LC Q+ +A ++ + M + V D
Sbjct: 188 CQFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADA 247
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
Y+I+I + ++ +A + K MV G P G + L ++ + +A ++
Sbjct: 248 VVYNILIAGLCREQRVTEAFNLFKSMVPK-GCYPNSGTYQVLLDGLLSSGKFVEAKGLVS 306
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ + GF ++++++G A + M E+GF+P + K+V +
Sbjct: 307 MMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVPRVGTWTKLVTSM 362
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/319 (21%), Positives = 123/319 (38%), Gaps = 23/319 (7%)
Query: 42 VDAKDYQQIPELL-------------GSFEEACQ----NPNPFSF---LSNFPQNHRIKV 81
+D KD+ ELL SF+ AC PN + + R
Sbjct: 30 LDHKDWLSPNELLKIFANIRDPSLITSSFKRACDRRDYKPNEALYSMMIDRLASCRRFSD 89
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
++E+L R R + Y + Y + HP A+ L C P + +
Sbjct: 90 VEELLARARAERFRFSDEFFYRLIKMYGNVANHP-EKAIETLFAMPGYNCWPSTKTFNYV 148
Query: 142 SSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
+ +R Q + V ++ L +G D N LV LC + +A +L M
Sbjct: 149 LHMLVCKR-QYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFGDAISLLYEMPKQG 207
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
CVP++ +YS ++ + + + A E+ + M + I +A R R + +A
Sbjct: 208 CVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADAVVYNILIAGLCREQR-VTEA 266
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+ + + KGC Y+V+++G L +++ A V M P + +++G
Sbjct: 267 FNLFKSMVPKGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDG 326
Query: 322 LAGVGEWKLATVVRQRFAE 340
L V A +V ++ E
Sbjct: 327 LCSVNCLDDAHLVLKQMVE 345
>gi|359477281|ref|XP_003631958.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Vitis vinifera]
Length = 898
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 103/249 (41%), Gaps = 19/249 (7%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
IAY+ +L+ L + AL I + R VP +L+ L R + + +I
Sbjct: 371 IAYNCILT-CLGKKRRVEEALRIFEEMKRDAVPNVPTYNILID--MLCREGKLNAALEIR 427
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M+ G P+ T N ++ LC +L EA + +GM C P+ ++S +I +
Sbjct: 428 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 487
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ +DA + ++M L+ G +P + + + ++ + + GC
Sbjct: 488 GRVDDAYSLYEKM-LDCGHVPGAIVYTSLIRSFFKCGRKEDGHKIYKEMVHTGCSPDL-- 544
Query: 280 YEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
++ ++C AG+T G + GFIP + ++ GL G LA
Sbjct: 545 --TLINTYMDC--VFKAGETEKGRALFREINAHGFIPDARSYSILIHGLVKAG---LANE 597
Query: 334 VRQRFAELK 342
+ F +K
Sbjct: 598 TYELFYAMK 606
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V +L EMK G+ P T ++ L ID+L EA + + S
Sbjct: 618 NAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 677
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +M+E+ + GL P + AL E+
Sbjct: 678 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCLLDALVKAEEIN 736
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ CP Y +++ G R++ A M + G P ++
Sbjct: 737 EALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMI 796
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA G A+ + RF
Sbjct: 797 SGLAKAGNILEASGLFSRF 815
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ E+ G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 765
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK N A +EM +GL P + + L + +A + + G
Sbjct: 766 RVRKFNKAFVFWQEM-QKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDS 824
Query: 278 QGYEVVVEG 286
Y ++EG
Sbjct: 825 ASYNAMIEG 833
Score = 41.2 bits (95), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
I + + +GC P L L + +++ + +++ + E+ + G+ PD + + L+
Sbjct: 531 IYKEMVHTGCSP----DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILI 586
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L E ++ M CV D +Y+ VI + K N A ++++EM + G
Sbjct: 587 HGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK-GH 645
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L + +A + E + G + Y +++G + A
Sbjct: 646 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 705
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + ++G P + +++ L E A + Q +LK
Sbjct: 706 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 749
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ +G P+ T ++S L ++EA+ + + +PD SY+ +I +S+A
Sbjct: 779 EMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSAN 838
Query: 221 KTNDAVEMMKEMVL 234
K DA + +E L
Sbjct: 839 KAMDAYALFEETRL 852
Score = 37.7 bits (86), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMKS G PD T ++ LC ++L EA ++ + + VP +Y+ +I +A
Sbjct: 290 EMKSHGLMPDDVTYTSMIGVLCKANRLDEAVELFEQLEQNRKVPCAYAYNTMIMGYGSAG 349
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K ++A +++ G +P + L R + +A+ + E ++R P Y
Sbjct: 350 KFDEAYGLLERQKAK-GSIPSVIAYNCILTCLGKKRRVEEALRIFEEMKRDAVP-NVPTY 407
Query: 281 EVVVEGCLECRE 292
++++ + CRE
Sbjct: 408 NILID--MLCRE 417
>gi|356502394|ref|XP_003520004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 525
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 57/250 (22%), Positives = 109/250 (43%), Gaps = 18/250 (7%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA--- 156
+AY+ L+ + L S A +L +R G +P Q +L ++ C+ ++
Sbjct: 184 VAYNSLI-HGLCSFGRWNEATTLLGNMMRKGIMPNVQTFNVL----VDNFCKEGKISRAK 238
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
I+ M +G PD T N ++S C + Q+ +A KV + M +P++ +YS +I
Sbjct: 239 TIMCFMVHVGVEPDVVTYNSVISGHCLLSQMNDAVKVFELMIHKGLLPNVVTYSSLIHGW 298
Query: 217 STARKTNDAVEMMKEMV---LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
R N A+ ++ EMV LN+ ++ ++ A R A+E+ +
Sbjct: 299 CKTRNINKAIFVLDEMVNNGLNLDVVTWSTLIGGFCKAGRPE----AAIELFCTMHEHHQ 354
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
Q ++++G +C+ + A M + I V++G+ G++ A
Sbjct: 355 LPNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDA-- 412
Query: 334 VRQRFAELKS 343
R+ F+ L S
Sbjct: 413 -RELFSCLPS 421
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 72/176 (40%), Gaps = 13/176 (7%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ TC ++ L EA + + M ++ +Y+IV+ M + K NDA E+
Sbjct: 356 PNLQTCAIILDGLFKCQFHSEAISLFRKMEKMNLELNIVTYNIVLDGMCSFGKFNDAREL 415
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWK------AVEMIEFLERKGCPIGFQGYEV 282
+P +G+ I V A + + K A +++ +E GCP Y V
Sbjct: 416 FS-------CLPSKGIQIDVVAYTTMIKGLCKEGLLDDAEDLLMKMEENGCPPNEFTYNV 468
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+V G L+ + + K +M M +G + ++ + E V Q+F
Sbjct: 469 LVRGLLQRYDISRSTKYLMLMKGKGLSADATTTELLISYFSANKENSALQVFLQKF 524
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 66/174 (37%), Gaps = 6/174 (3%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
S+G PD T +++ LC + V VL M P + +++ +I + A
Sbjct: 35 SLGVKPDVHTLTIVINCLCHLKHTVFGFSVLGAMFKIGVEPTVVTFATLINGLC-AEGNV 93
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ---GY 280
A + + +MG + L + A+ +E +E G GF Y
Sbjct: 94 GAAARFADSLEDMGYESNSYTHGTIINGLCKVGDTAGAISYLEKIE--GRNRGFDLLIAY 151
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+++ + LA GMT +G P + ++ GL G W AT +
Sbjct: 152 STIMDSLCKDGMLCLALNFFSGMTCKGIQPDLVAYNSLIHGLCSFGRWNEATTL 205
>gi|224109914|ref|XP_002333182.1| predicted protein [Populus trichocarpa]
gi|222835036|gb|EEE73485.1| predicted protein [Populus trichocarpa]
Length = 319
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/148 (27%), Positives = 68/148 (45%), Gaps = 1/148 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + G PD T + + L L +A ++ + M + PDL Y+I+I AM +
Sbjct: 135 DMHAQGCSPDLVTYSIFLHGLSKQGYLDQALELFREMQNNYLNPDLVIYNILIDAMCKSG 194
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K DA E+ ++ + GL+P + + L + +A + +ER GCP Y
Sbjct: 195 KLEDARELFLKLHVK-GLLPDVRSWTSIISGLCREGLLDEAYKAFRQMERDGCPPDCCSY 253
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGF 308
V+V G L+ A + M +RGF
Sbjct: 254 NVIVRGFLQNNGASRAEQLFQEMFDRGF 281
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 64/137 (46%), Gaps = 11/137 (8%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++Q + ++E G P+ T + L++ +++ EA KV M + C+PD+ SY+
Sbjct: 28 EAQGIVKTMIEK---GVEPNTVTYSSLMNGYLLQNRVFEARKVFNAMITRGCIPDVLSYN 84
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK-AVEMIEFLE 269
I+I A++ ++A ++ EM GL+P + WK +++ + +
Sbjct: 85 ILINGCCKAQRIDEAKQIFDEMSFR-GLIPNTATYNTLLGGF------WKQKIQLFKDMH 137
Query: 270 RKGCPIGFQGYEVVVEG 286
+GC Y + + G
Sbjct: 138 AQGCSPDLVTYSIFLHG 154
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/97 (24%), Positives = 46/97 (47%), Gaps = 3/97 (3%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L++ + ++ C+S + D + L++ G PD + ++S LC L EA K +
Sbjct: 180 LVIYNILIDAMCKSGKLEDARELFLKLHVKGLLPDVRSWTSIISGLCREGLLDEAYKAFR 239
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
M C PD SY++++ + A ++ +EM
Sbjct: 240 QMERDGCPPDCCSYNVIVRGFLQNNGASRAEQLFQEM 276
>gi|449511869|ref|XP_004164076.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + R GC P +I L A L + Q + + MK G P+ T N L+
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSEN-KFQMINPLYTNMKKDGLIPNVFTYNILL 186
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
+LC D++ A K+ MS+ C PD +Y+ ++ ++ A K +DA E+
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 52/254 (20%), Positives = 103/254 (40%), Gaps = 10/254 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQI 137
IK++ EM+++ + P + + +L + LA A+ + GC +
Sbjct: 264 IKLLGEMMDNGVD------PNVVSYSCIINSLCVSGNVELAFALFAQMFLRGCDANIHTF 317
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+ ++ R + D+ M G P+ N L+ LC+ L EA +V M
Sbjct: 318 TPLIKGCFM--RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ C+P++ +YSI+I + + A E M+ + G P + L N
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI-SHGCRPNVVTYTCMVDVLCKNSM 434
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+A ++E + +GC + ++G A K + M G +P I +
Sbjct: 435 FDQANSLVEKMTLEGCTPNTITFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494
Query: 318 VVEGLAGVGEWKLA 331
+++ L + +++ A
Sbjct: 495 LLDALFRMNKYEEA 508
>gi|449462136|ref|XP_004148797.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g48810-like [Cucumis sativus]
Length = 660
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 54/110 (49%), Gaps = 1/110 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + R GC P +I L A L + Q + + MK G P+ T N L+
Sbjct: 128 ALKMFYRIGEFGCKPTVRIYNHLLDALLSEN-KFQMINPLYTNMKKDGLIPNVFTYNILL 186
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
+LC D++ A K+ MS+ C PD +Y+ ++ ++ A K +DA E+
Sbjct: 187 KALCKNDRVDAAHKLFVEMSNKGCPPDAVTYTTMVSSLCKAGKIDDAREL 236
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 53/254 (20%), Positives = 103/254 (40%), Gaps = 10/254 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQI 137
IK++ EM+++ + S I +S ++ LA A+ + GC +
Sbjct: 264 IKLLGEMMDNGVDPNVVSYSCIINSLCVSGNVE------LAFALFAQMFLRGCDANIHTF 317
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+ ++ R + D+ M G P+ N L+ LC+ L EA +V M
Sbjct: 318 TPLIKGCFM--RGKLYEALDLWKLMIQDGCEPNVVAYNTLIHGLCSNGSLEEALQVCDQM 375
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ C+P++ +YSI+I + + A E M+ + G P + L N
Sbjct: 376 QRSGCLPNVTTYSILIDGFAKSGDLVGASETWNRMI-SHGCRPNVVTYTCMVDVLCKNSM 434
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+A ++E + +GC + ++G A K + M G +P I +
Sbjct: 435 FDQANSLVEKMTLEGCTPNTMTFNTFIKGLCGNGRVEWAMKLLERMQGHGCLPNITTYNE 494
Query: 318 VVEGLAGVGEWKLA 331
+++ L + +++ A
Sbjct: 495 LLDALFRMNKYEEA 508
>gi|449449675|ref|XP_004142590.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Cucumis sativus]
Length = 581
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 65/139 (46%), Gaps = 1/139 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q S + M+S G+ PD T N ++ SLC+ +L A +V+ + C P + +Y+
Sbjct: 146 QIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEVMDELLKDGCKPSVITYT 205
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I A + N+A+E+ E+V + GL P + + +A++ + L
Sbjct: 206 ILIEATILEGRINEALELFDELV-SRGLRPDLYTYNAIIRGICKEGMEDRALDFVRHLSA 264
Query: 271 KGCPIGFQGYEVVVEGCLE 289
+GC Y +++ L
Sbjct: 265 RGCNPDVVSYNILLRSFLN 283
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 4/193 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL ++ GC P V +LL S + R + ++ +M G P+ T + L
Sbjct: 255 ALDFVRHLSARGCNPDVVSYNILLRSFLNKSRWEDGE--RLMKDMVLSGCEPNVVTHSIL 312
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+SS C ++ EA VL+ M PD SY +I A + + A+E +++MV + G
Sbjct: 313 ISSFCREGRVREAVNVLEVMKEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVSD-G 371
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+P + A L A+++ E L+ GCP + Y + C I A
Sbjct: 372 CLPDIVNYNTILATLCKFGCADLALDVFEKLDEVGCPPTVRAYNTMFSALWSCGNKIKAL 431
Query: 298 KTVMGMTERGFIP 310
+ + M +G P
Sbjct: 432 EMISEMIRKGIDP 444
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 58/225 (25%), Positives = 101/225 (44%), Gaps = 13/225 (5%)
Query: 58 EEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQSL 113
+E P+ +S+ +S F + R+ + E LE + P I Y+ +L+ TL
Sbjct: 333 KEKGLTPDSYSYDPLISAFCKEGRLDLAIEYLEKMVS--DGCLPDIVNYNTILA-TLCKF 389
Query: 114 HPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDC 171
LAL + ++ GC P V + S+ W C ++ A +++ EM G PD
Sbjct: 390 GCADLALDVFEKLDEVGCPPTVRAYNTMFSALW---SCGNKIKALEMISEMIRKGIDPDE 446
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L+S LC + EA +L M + P + S++IV+ M A + + +E++
Sbjct: 447 ITYNSLISCLCRDGLVDEAIGLLVDMEATRFQPTVISFNIVLLGMCKAHRVFEGIELLIT 506
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
MV G +P + + + + +A+E+ L R G G
Sbjct: 507 MV-EKGCLPNETSYVLLIEGIAYAGWRAEAMELANSLYRLGVISG 550
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 69/150 (46%), Gaps = 16/150 (10%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD + N ++S +Q+ A +V M S PD+ +Y+I+IG++ + K A E+
Sbjct: 129 PDVYSYNAMISGFSKANQIDSANQVFDRMRSRGFSPDVVTYNIMIGSLCSRGKLELAFEV 188
Query: 229 MKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
M E+ L G P I + A + R + +A+E+ + L +G Y ++ G
Sbjct: 189 MDEL-LKDGCKPSVITYTILIEATILEGR-INEALELFDELVSRGLRPDLYTYNAIIRGI 246
Query: 288 LECREYILAGKTVMGMTERG--FIPYIKVR 315
C+E GM +R F+ ++ R
Sbjct: 247 --CKE---------GMEDRALDFVRHLSAR 265
>gi|125590524|gb|EAZ30874.1| hypothetical protein OsJ_14948 [Oryza sativa Japonica Group]
Length = 414
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/173 (22%), Positives = 75/173 (43%), Gaps = 2/173 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-SAECVPDLESY 209
Q Q +++ M G PD T N LV LC +++ +VL+ + C+P++ ++
Sbjct: 97 QVQKALELVERMNEFGCSPDTVTHNILVDGLCRTNEVSRGHEVLRRLQRDGVCMPNVVTF 156
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ VI A K DA+ + +MV + G+MP + ++ AVE+ + +
Sbjct: 157 TSVISGYCKAGKLEDAMAVYNDMVAS-GIMPNTVTYNVLINGYGKVGDLGSAVEVYQQMT 215
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R CP + +++G C + A + M + P + ++ L
Sbjct: 216 RLRCPPDVVTFSSLIDGYCRCGQLDDALRIWSDMAQHRIQPNVYTFSIIIHSL 268
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 73/171 (42%), Gaps = 3/171 (1%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
GY PD ++LVSS + L +A +L S C + +Y+ ++ ++ + +D
Sbjct: 6 GYSPDARFLSFLVSSCTCANLLDASATLLSKASEFGCRVEAYAYNKLMSSLIGRGRVHDV 65
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
V + + + + P V + ++ KA+E++E + GC + ++V+
Sbjct: 66 VALFERWIQDRVYSPDVWSFNVVIKGVCRVGQVQKALELVERMNEFGCSPDTVTHNILVD 125
Query: 286 GCLECREYILAGKTVMGMTERGFI--PYIKVRQKVVEGLAGVGEWKLATVV 334
G E + G V+ +R + P + V+ G G+ + A V
Sbjct: 126 GLCRTNE-VSRGHEVLRRLQRDGVCMPNVVTFTSVISGYCKAGKLEDAMAV 175
>gi|2980784|emb|CAA18211.1| puative protein [Arabidopsis thaliana]
gi|7269983|emb|CAB79800.1| puative protein [Arabidopsis thaliana]
Length = 1075
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 11/229 (4%)
Query: 50 IPELLGSFEEACQ---NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD 103
+ EL G+FEE + PN +F L + + K ++E+ + R I+Y+
Sbjct: 851 LDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYN 908
Query: 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK 163
+++ ++ ++ AI V + LL + ++ Q + IL MK
Sbjct: 909 TIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDK--QMEKFRSILKRMK 966
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
PD T N +++ + E A VLK + + PDL SY+ +I A
Sbjct: 967 KSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 1026
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+AV ++KEM ++P + + ALR N E +A++ ++++ G
Sbjct: 1027 EAVGLVKEM-RGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMG 1074
>gi|451798817|gb|AGF69112.1| PPR [Raphanus sativus]
Length = 479
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ W + R ++ +EM+ G PD T + +++ C+ + EA ++L+ M
Sbjct: 158 IIDGLWKDGR--HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV 215
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD+ ++S +I A+ N A ++++EM+ + G+ P + L + ++
Sbjct: 216 RKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI-SSGVCPNVVTCNTLLDGLCDSGKLK 274
Query: 260 KAVEMIEFLER-----------KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
A+EM + +++ G Q Y +++ G + +++ A + M RG
Sbjct: 275 DALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 334
Query: 309 IPYIKVRQKVVEGL 322
+P ++ GL
Sbjct: 335 VPDTVTYSSMINGL 348
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
++ +G+HP T N L+ LC D++ EA + M C P++ +++ ++ +
Sbjct: 40 KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREG 95
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL----ERKGCPIG 276
+ +AV ++ MV + GL P Q I + +M V + L E
Sbjct: 96 RVVEAVALLDRMVED-GLQPNQ---ITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD 151
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + + A + M ++G P I ++ G G+W A
Sbjct: 152 VVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206
Score = 40.8 bits (94), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI------------- 165
A +LQ + SG P ++ + L+ C S + D L K++
Sbjct: 241 AQDLLQEMISSGVCP----NVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296
Query: 166 -GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G PD T N L+S L + +EA ++ + M VPD +YS +I + + ++
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356
Query: 225 AVEMMKEM 232
A +M M
Sbjct: 357 ATQMFDSM 364
>gi|297733858|emb|CBI15105.3| unnamed protein product [Vitis vinifera]
Length = 627
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 80/191 (41%), Gaps = 1/191 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V+++L EM+S G PD + N L+ + + EA V + M A CVP+ +YSI+
Sbjct: 62 EKVSELLKEMESGGSFPDITSYNVLLEAHAQSGSIKEAMGVFRQMQGAGCVPNAATYSIL 121
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+ + +D ++ EM ++ P + + V + + +
Sbjct: 122 LNLYGRHGRYDDVRDLFLEMKVS-NTEPNAATYNILINVFGEGGYFKEVVTLFHDMVEEN 180
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ YE ++ C + + A K ++ M E+G +P K V+E ++ A
Sbjct: 181 VEPNMETYEGLIFACGKGGLHEDAKKILLHMNEKGVVPSSKAYTGVIEAYGQAALYEEAL 240
Query: 333 VVRQRFAELKS 343
V E+ S
Sbjct: 241 VAFNTMNEVGS 251
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 44/85 (51%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR + M G PD T +YLV + +++L + +++LK M S PD+
Sbjct: 22 RRGLGDEAEMVFRTMNEGGILPDITTYSYLVETFGKLNRLEKVSELLKEMESGGSFPDIT 81
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
SY++++ A + + +A+ + ++M
Sbjct: 82 SYNVLLEAHAQSGSIKEAMGVFRQM 106
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 37/163 (22%), Positives = 75/163 (46%), Gaps = 6/163 (3%)
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+EM+ PD T ++S C + E+ + + + +P + Y +++ + A
Sbjct: 314 VEMEKARCDPDEQTLEAVLSVYCFAGLVEESEEQFGEIKALGILPSVMCYCMMLAVYAKA 373
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAALRANREMWKAVEMI-EFLERKGCPIG 276
+ +DA +++ EM N Q G +I+ +N W+ VE + E L+ +GC +G
Sbjct: 374 DRWDDAHQLLDEMFTNRVSNIHQVIGQMIRGDYDDDSN---WQMVEYVFEKLKSEGCSLG 430
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+ Y ++E + A + + T+RG P + + K+V
Sbjct: 431 VRFYNTLLEALWWLGQKERATRVLNEATKRGLFPELFRKNKLV 473
>gi|255539805|ref|XP_002510967.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550082|gb|EEF51569.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 774
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 3/132 (2%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
A++ EM S G P T ++ +LC ++++ A +L+ M+ CVP+ Y +I A
Sbjct: 193 ANVFYEMLSKGVIPTVYTFGVVMKALCMVNEVDNACSLLRDMTKHGCVPNSVVYQTLIHA 252
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCP 274
+S + N+A+++++EM L MG +P V L R NR + + ++++ + +G
Sbjct: 253 LSKRDRVNEALKLLEEMFL-MGCLPDVDTFNDVIYGLCRLNR-IHEGAKLVDRMLFRGFT 310
Query: 275 IGFQGYEVVVEG 286
Y V++ G
Sbjct: 311 PNDITYGVLMNG 322
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/206 (20%), Positives = 95/206 (46%), Gaps = 16/206 (7%)
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAID 185
+GC P L+ + L+ C+ + + +L EM + G+ + N L+ +LC
Sbjct: 409 NGCTP----NLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNVLLRALCKNG 464
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
++ +A +L MS C PD+ +++ +I + + DA+ + ++M+L+ G++
Sbjct: 465 KVPKALDMLGEMSDKGCKPDIFTFNTLIFGLCKVDRKEDALALYRDMLLD-GVIANTVTY 523
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG--- 302
+ A + +A++++ + +GCP+ E+ G ++ + A + +G
Sbjct: 524 NTLIHAFLRGGAIQEALKLVNDMLFRGCPLD----EITYNGLIKAFCKLGATEKALGLFD 579
Query: 303 -MTERGFIPYIKVRQKVVEGLAGVGE 327
M + +P ++ GL VG+
Sbjct: 580 EMVRKDLVPSNISCNLLINGLCRVGK 605
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 11/207 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++L+ + GCVP + L A L +R + +L EM +G PD T N ++
Sbjct: 227 ACSLLRDMTKHGCVPNSVVYQTLIHA-LSKRDRVNEALKLLEEMFLMGCLPDVDTFNDVI 285
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC ++++ E AK++ M P+ +Y +++ + K ++A +++LN
Sbjct: 286 YGLCRLNRIHEGAKLVDRMLFRGFTPNDITYGVLMNGLCRVGKVDEA-----QVLLNKVP 340
Query: 239 MPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P I + +++ R + + + + GC + ++ G C++ ++
Sbjct: 341 TPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGL--CKKGLMGS 398
Query: 298 KTVM--GMTERGFIPYIKVRQKVVEGL 322
M M+ G P + +++G
Sbjct: 399 AVDMVNDMSANGCTPNLITYTTLLDGF 425
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 35/157 (22%), Positives = 70/157 (44%), Gaps = 3/157 (1%)
Query: 132 VPVPQI--RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
VP P +L + +++ ++ A + +M G PD T N L+ LC +
Sbjct: 339 VPTPNDVHFTILINGYVKSGRLDEANAFLYDKMIKNGCRPDVFTFNTLIHGLCKKGLMGS 398
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A ++ MS+ C P+L +Y+ ++ + +A ++ EM + G + +
Sbjct: 399 AVDMVNDMSANGCTPNLITYTTLLDGFCKKNQLEEAGYVLNEMSAKGFELNIMGYNV-LL 457
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
AL N ++ KA++M+ + KGC + ++ G
Sbjct: 458 RALCKNGKVPKALDMLGEMSDKGCKPDIFTFNTLIFG 494
>gi|255564599|ref|XP_002523294.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223537382|gb|EEF39010.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 544
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 126/324 (38%), Gaps = 34/324 (10%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQN-----PNPFS------- 68
F+ RS+ SL TL + A V K Y +L+ + + C++ PN F+
Sbjct: 158 DFNVQRSVRSLNTL---LNAFVQNKRY----DLVHAMFKNCRSKYGVLPNVFTCNILIKA 210
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
+KV+DEM P + Y +L S + A +
Sbjct: 211 LCKKNDVESAVKVLDEM-----PAMGMIPNVVTYTTILG-GYSSRGDMVNANKVFGELFD 264
Query: 129 SGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAID 185
G +P +L + + C+ +AD ++ +M G P+ T +V + C
Sbjct: 265 RGWLPDATTYTILMNGY----CEQGRLADAIKLMDDMGENGVEPNEVTYGVMVEAYCKEK 320
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+ EA +L M + VP VI + A K +A E+ K M L MP ++
Sbjct: 321 KAGEARNLLDDMLERQYVPSSALCCKVIDVLCEAGKIEEACELWKRM-LKKNCMPDNAIM 379
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L ++W+A ++ ER P Y ++ G E E AGK M E
Sbjct: 380 STLIHWLCKEGKVWEARKLFGEFERGAIP-SLLTYNTLIAGMCEKGELSEAGKLWDDMME 438
Query: 306 RGFIPYIKVRQKVVEGLAGVGEWK 329
+G+ P +++G + +G K
Sbjct: 439 KGYKPNAFTYNMLIKGFSKIGNAK 462
>gi|451798815|gb|AGF69111.1| PPR [Raphanus sativus]
Length = 479
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/194 (20%), Positives = 88/194 (45%), Gaps = 14/194 (7%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ W + R ++ +EM+ G PD T + +++ C+ + EA ++L+ M
Sbjct: 158 IIDGLWKDGR--HTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEAQRLLQEMLV 215
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD+ ++S +I A+ N A ++++EM+ + G+ P + L + ++
Sbjct: 216 RKISPDVVTFSGLINALVKEGDLNSAQDLLQEMI-SSGVCPNVVTCNTLLDGLCDSGKLK 274
Query: 260 KAVEMIEFLER-----------KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
A+EM + +++ G Q Y +++ G + +++ A + M RG
Sbjct: 275 DALEMFKAMQKSMMDIDATHAFNGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGI 334
Query: 309 IPYIKVRQKVVEGL 322
+P ++ GL
Sbjct: 335 VPDTVTYSSMINGL 348
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/175 (21%), Positives = 73/175 (41%), Gaps = 12/175 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
++ +G+HP T N L+ LC D++ EA + M C P++ +++ ++ +
Sbjct: 40 KLTKLGFHPTLVTFNTLLHGLCVEDRVSEALDLFHQM----CKPNVVTFTTLMNGLCREG 95
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL----ERKGCPIG 276
+ +AV ++ MV + GL P Q I + +M V + L E
Sbjct: 96 RVVEAVALLDRMVED-GLQPNQ---ITYGTIVDGMCKMGDTVSALNLLRKMEELSHIKPD 151
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + + A + M ++G P I ++ G G+W A
Sbjct: 152 VVIYSAIIDGLWKDGRHTDAQNLFIEMQDKGIFPDIVTYSCMINGFCSSGKWSEA 206
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 18/128 (14%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI------------- 165
A +LQ + SG P ++ + L+ C S + D L K++
Sbjct: 241 AQDLLQEMISSGVCP----NVVTCNTLLDGLCDSGKLKDALEMFKAMQKSMMDIDATHAF 296
Query: 166 -GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G PD T N L+S L + +EA ++ + M VPD +YS +I + + ++
Sbjct: 297 NGVEPDVQTYNILISGLINEGKFLEAEELYEEMPHRGIVPDTVTYSSMINGLCKQSRLDE 356
Query: 225 AVEMMKEM 232
A +M M
Sbjct: 357 ATQMFDSM 364
>gi|18398498|ref|NP_565422.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75146596|sp|Q84J71.1|PP161_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17670
gi|28393395|gb|AAO42121.1| unknown protein [Arabidopsis thaliana]
gi|28973597|gb|AAO64123.1| unknown protein [Arabidopsis thaliana]
gi|330251570|gb|AEC06664.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 463
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C S+++ + ++ ++ + G+ PDC N ++ C + + EA V K M
Sbjct: 237 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGV 296
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD +Y+ +I +S A + +A +K MV + G P + + E A+
Sbjct: 297 EPDQITYNTLIFGLSKAGRVEEARMYLKTMV-DAGYEPDTATYTSLMNGMCRKGESLGAL 355
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECR 291
++E +E +GC Y ++ G + R
Sbjct: 356 SLLEEMEARGCAPNDCTYNTLLHGLCKAR 384
>gi|297734659|emb|CBI16710.3| unnamed protein product [Vitis vinifera]
Length = 569
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 47/86 (54%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ + +S ++ ++M G PD T N L++ C +V A ++ M ++ PDL
Sbjct: 453 KQGRMRSAINVFMDMHQTGLSPDIITYNTLINGYCKAFDMVNADNLVNRMYASGSNPDLT 512
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMV 233
+Y+I I ++R+ N AV M+ E+V
Sbjct: 513 TYNIRIHGFCSSRRMNRAVLMLDELV 538
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 77/170 (45%), Gaps = 3/170 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L ++ +G PD + VS LC +L EA + L M P + +++ VI A S
Sbjct: 218 LLKDISVLGLLPDRSLFDISVSGLCWAGRLDEAMEFLMDMLEKGLSPSIIAFNSVIAAYS 277
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + A E K MV + GL P + L N + +A E+I + KG +
Sbjct: 278 QAGLEDKAFEAYKLMV-HFGLTPSPSTCSSLLMGLSINGRLQEATELIGQMIEKGLSVNN 336
Query: 278 QGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVG 326
+ V+++ + R ++ +++ G M RG P + ++GL+ G
Sbjct: 337 MAFTVLLDKFFK-RGDVVGAQSLWGEMERRGIFPDVVAFSAFIDGLSKQG 385
>gi|18417671|ref|NP_567856.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|223635625|sp|O65567.2|PP342_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At4g30825, chloroplastic; Flags: Precursor
gi|332660415|gb|AEE85815.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 904
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 11/229 (4%)
Query: 50 IPELLGSFEEACQ---NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD 103
+ EL G+FEE + PN +F L + + K ++E+ + R I+Y+
Sbjct: 680 LDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYN 737
Query: 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK 163
+++ ++ ++ AI V + LL + ++ Q + IL MK
Sbjct: 738 TIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDK--QMEKFRSILKRMK 795
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
PD T N +++ + E A VLK + + PDL SY+ +I A
Sbjct: 796 KSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 855
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+AV ++KEM ++P + + ALR N E +A++ ++++ G
Sbjct: 856 EAVGLVKEM-RGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMG 903
>gi|357134597|ref|XP_003568903.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Brachypodium distachyon]
Length = 537
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/132 (20%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ + M G +PD CN ++ LC ++ EA + + M+ C D+ +Y+ +I
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALDIFREMTDRGCQADVATYNTLI 364
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
R+T E++ +M N G P + + L+ + + +++ +E+ GC
Sbjct: 365 KYFCKIRRTEKVYELLDDME-NKGCSPNN---MTYSYILKTTEKPKDVIHLLQRMEKSGC 420
Query: 274 PIGFQGYEVVVE 285
+ Y +++
Sbjct: 421 RLDSDTYNLILN 432
>gi|218186287|gb|EEC68714.1| hypothetical protein OsI_37196 [Oryza sativa Indica Group]
Length = 2010
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 74/169 (43%), Gaps = 5/169 (2%)
Query: 144 AWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG-MSS 199
A L CQ S D L +M G P + + +L ++VEA +V+K M S
Sbjct: 1475 AVLSSLCQYASAQDAVAFLDKMCHWGISPSRSDYHAVFDALLQEGKVVEAYEVMKNKMGS 1534
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
P L + + + A S + + E+ EM+L GL+P + AL ++
Sbjct: 1535 NRVAPALAYFKLTMQAFSKCLEFDSVEEVFDEMLLR-GLVPDVDVYNVYIGALCRKGDLA 1593
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A +M+ +E GCP + + VVV GC+ + + V T RG
Sbjct: 1594 RARQMMTCMEHAGCPPDVRTFGVVVAGCMSAGDMGTVRELVQEATRRGL 1642
>gi|297836398|ref|XP_002886081.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331921|gb|EFH62340.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 743
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 72/153 (47%), Gaps = 6/153 (3%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+V D+M++ + L ++ + Y L L+ AL +L+R + V +
Sbjct: 190 EVFDDMVKIGVSLDVKTFNVLVNGYCLEGKLED------ALGMLERMVSEFNVNPDNVTY 243
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ + V D+LL+MK G P+ T N LV C + L EA ++++ M
Sbjct: 244 NTILKAMSKKGRLSDVKDLLLDMKRNGLVPNRVTYNNLVYGYCKLGSLKEAFQIVELMKQ 303
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+PDL +Y+I+I + A + +E+M M
Sbjct: 304 TNILPDLCTYNILINGVCNAGSIREGLELMDVM 336
>gi|357110839|ref|XP_003557223.1| PREDICTED: pentatricopeptide repeat-containing protein At5g61990,
mitochondrial-like [Brachypodium distachyon]
Length = 897
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 93/209 (44%), Gaps = 4/209 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+L SG P + L ++ + ++ DIL EM S G P+ + L+
Sbjct: 334 AKALLDEMSCSGLKPNVVVYATLVDGFM-KEGKAAEAFDILNEMISAGVQPNKIMYDNLI 392
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC I QL A+K+L M PD +Y ++ + A E++ EM N G+
Sbjct: 393 RGLCKIGQLGRASKLLNEMIKVGHRPDTFTYHPLMQGHFQHYDKDGAFELLNEM-RNSGI 451
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAG 297
+P + L N E +A ++E + +G P F Y ++ G + LA
Sbjct: 452 LPNAYTYGIMINGLCQNGESKEAGNLLEEMISEGLKPNAFM-YAPLIIGHSKEGHISLAC 510
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+++ MT+ +P + +++GL+ VG
Sbjct: 511 ESLENMTKANVLPDLFCYNSLIKGLSTVG 539
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 76/171 (44%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T L++ LC +L EA +L MS + P++ Y+ ++
Sbjct: 305 EMVDYGLSPDAFTYGALMNGLCKGGRLKEAKALLDEMSCSGLKPNVVVYATLVDGFMKEG 364
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A +++ EM+ + G+ P + M + L ++ +A +++ + + G Y
Sbjct: 365 KAAEAFDILNEMI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLNEMIKVGHRPDTFTY 423
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + + A + + M G +P ++ GL GE K A
Sbjct: 424 HPLMQGHFQHYDKDGAFELLNEMRNSGILPNAYTYGIMINGLCQNGESKEA 474
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 56/126 (44%), Gaps = 8/126 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE-------RRCQSQSVADILLEMKSIG 166
HP PL LA +QR ++ P S+A L+ + ++ A ++L M +G
Sbjct: 147 HP-PLVLASIQRAIQDSDARSPSPSPSHSTAVLDVLVDTYKKNGSVRTAAQVVLMMGDLG 205
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P CN L+ L D + K+ M A PD+ +YS + A AR + A
Sbjct: 206 LAPTRRCCNGLLKDLLRADAMELVWKLKGFMEGAGIPPDVYTYSTFLEAHCKARDFDAAK 265
Query: 227 EMMKEM 232
++ +EM
Sbjct: 266 KVFEEM 271
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 64/319 (20%), Positives = 117/319 (36%), Gaps = 18/319 (5%)
Query: 34 LEETVRAAVDAKDYQQIPELLGSFEE-----ACQN----------PNPFSFLSNFPQNHR 78
LEE + + + P ++G +E AC++ P+ F + S
Sbjct: 478 LEEMISEGLKPNAFMYAPLIIGHSKEGHISLACESLENMTKANVLPDLFCYNSLIKGLST 537
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
+ I+E E + ++ R + Y L + L A +LQ+ L SG P
Sbjct: 538 VGRIEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTRNLEKADQLLQQMLNSGLKPNADT 597
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L + + + V+ IL M G PD ++ +L + + A VL +
Sbjct: 598 YTDLLEGYFKSN-DHEKVSSILQSMLGSGDKPDNHIYGIVIRNLSRSENMEVAFMVLTEV 656
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
VPDL YS +I + AV ++ EM GL P + + +
Sbjct: 657 EKNGLVPDLHIYSSLISGLCKMADMEKAVGLLDEMA-KEGLEPGIVCYNALIDGFCRSGD 715
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A + + + KG Y +++G + + A M +RG P V
Sbjct: 716 ISRARNVFDSILAKGLLPNCVTYTALIDGNCKNGDITDAFDLYKDMLDRGIAPDAFVYNV 775
Query: 318 VVEGLAGVGEWKLATVVRQ 336
+ G + + + A + +
Sbjct: 776 LATGCSDAADLEQALFLTE 794
>gi|21553611|gb|AAM62704.1| unknown [Arabidopsis thaliana]
Length = 463
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C S+++ + ++ ++ + G+ PDC N ++ C + + EA V K M
Sbjct: 237 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGV 296
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD +Y+ +I +S A + +A +K MV + G P + + E A+
Sbjct: 297 EPDQITYNTLIFGLSKAGRVEEARMYLKTMV-DAGYEPDTATYTSLMNGMCRKGESLGAL 355
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECR 291
++E +E +GC Y ++ G + R
Sbjct: 356 SLLEEMEARGCAPNDCTYNTLLHGLCKAR 384
>gi|296088147|emb|CBI35592.3| unnamed protein product [Vitis vinifera]
Length = 883
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T L+ + C I +A K+L M++ CVP++ +Y+I+I +
Sbjct: 290 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 349
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW--KAVEMIEFLERKGCPIGFQ 278
K +A + ++M L GL P G++ A +E W A +++ +E+ C +
Sbjct: 350 KIEEANGVFRKM-LKHGLCP--GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIR 406
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++EG + A + + + G +P +V+G G+ +A
Sbjct: 407 TYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMA 459
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTN 223
+G+ D C LV + C D L EA +V + MS E C P+ +YSI+I + A +
Sbjct: 223 LGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLE 282
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+A ++ +EMV G P + A KA++M++ + K C Y ++
Sbjct: 283 EAFQLKQEMV-EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 341
Query: 284 VEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ CRE + A M + G P I ++ G G W
Sbjct: 342 IDRL--CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEG-W 385
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
+ L A A+L + ++ G VP ++ + +E C++ A +L MK G P+
Sbjct: 559 YKLNEANAMLGKMMKYGLVP----SVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 614
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T +++ LC ++ EA +L MSS P+ +Y++++ A A + + A +++
Sbjct: 615 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 674
Query: 231 EMVLNMGLMPR 241
MV N G P
Sbjct: 675 TMVKN-GCQPN 684
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 2/216 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L+R + +G +P +L + + Q +I M S G PD T L+
Sbjct: 424 AFLLLRRVVDNGLLPDRVTYNILVDGFC-KEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 482
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + +L +A +L M D +++ +I K D + + MV N L
Sbjct: 483 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 542
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
AL + ++ +A M+ + + G + +++EG E L+ K
Sbjct: 543 TTAHTFNC-FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 601
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M + G P + ++ GL G + A +
Sbjct: 602 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 637
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T + L+ LC +L EA ++ + M C P +Y+++I A T+ A++M
Sbjct: 263 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 322
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM + I + R + + L+ CP G + ++ G
Sbjct: 323 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP-GIITFNALING-- 379
Query: 289 ECRE-YILAGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
C+E ++++ ++ + E+G P I+ +++EGL V + A ++ +R +
Sbjct: 380 YCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 433
>gi|297833654|ref|XP_002884709.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297330549|gb|EFH60968.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 689
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/217 (23%), Positives = 95/217 (43%), Gaps = 4/217 (1%)
Query: 119 ALAILQRT-LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL ++Q + G + V ++ +RR + S +++ EM G + CN L
Sbjct: 413 ALGVMQEVESKGGHLDVYAYASIIDCLCKKRRLEEAS--NLVKEMSKHGVELNSHVCNAL 470
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ L +L +A+ +++GM C+P + SY+I+I + A K +A +KEM+ N G
Sbjct: 471 IGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYNILICGLCEAGKFGEASAFVKEMLEN-G 529
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L P + L +R++ A+E+ + G + +++ G + A
Sbjct: 530 LKPDLKTYSILLGGLCRDRKIELALELWHQFLQSGLEPDVMMHNILIHGLCSVGKLDDAM 589
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M R + ++EG V + ATV+
Sbjct: 590 TVMANMEHRNCTANLVTYNTLMEGYFKVRDSNRATVI 626
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 48/103 (46%), Gaps = 1/103 (0%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
GC P + L +A++E + Q V + ++ G P+ T N L+ C + +
Sbjct: 109 GCEPGIRSYNTLLNAFVEAK-QWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEFEK 167
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
A L M PD+ SYS VI ++ K +DA+E+ EM
Sbjct: 168 ARGFLNWMWKEGFKPDVFSYSTVINDLAKTGKLDDALELFDEM 210
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M + GY D T + LC + +A V++ + S D+ +Y+ +I + R+
Sbjct: 385 MPAKGYAADNTTYGIFIHGLCVNGYVNKALGVMQEVESKGGHLDVYAYASIIDCLCKKRR 444
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+A ++KEM G+ + + L + + A ++ + + GC Y
Sbjct: 445 LEEASNLVKEMS-KHGVELNSHVCNALIGGLIRDSRLSDASLLMRGMGKNGCLPTVVSYN 503
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
+++ G E ++ A V M E G P +K ++ GL + +LA + +F
Sbjct: 504 ILICGLCEAGKFGEASAFVKEMLENGLKPDLKTYSILLGGLCRDRKIELALELWHQF 560
>gi|225451367|ref|XP_002263590.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g09680 [Vitis vinifera]
gi|296087085|emb|CBI33459.3| unnamed protein product [Vitis vinifera]
Length = 592
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/201 (20%), Positives = 84/201 (41%), Gaps = 4/201 (1%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ + R C+ + + L E+ G P + N L++ C L + ++ + M
Sbjct: 229 NVLMHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMME 288
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ +YS++I + + +DA ++ EM + GL+P +
Sbjct: 289 NRVFPDVFTYSVLINGLCKEGQLDDANKLFLEMC-DRGLVPNDVTFTTLINGHCVTGRAD 347
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+E+ + + RKG Y ++ G + + A K V+ MT+RG P ++
Sbjct: 348 LGMEIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLI 407
Query: 320 EGLAGVGEWKLATVVRQRFAE 340
+G G+ + A +R+ +
Sbjct: 408 DGCCKEGDLESALEIRKEMVK 428
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I +M G PD T N L++ LC + L EA K++ M+ PD +Y+++I
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410
Query: 217 STARKTNDAVEMMKEMVL------NMGLMP------RQGMVIKVAAALRANREMWKAVEM 264
A+E+ KEMV N+ R+G VI+ LR EM
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR---------EM 461
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E G Y +V+ G + + K + M G +P + ++ GL
Sbjct: 462 LE----AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517
Query: 325 VGEWKLATVV 334
G+ K A ++
Sbjct: 518 QGQMKNANML 527
>gi|147861320|emb|CAN83994.1| hypothetical protein VITISV_031191 [Vitis vinifera]
Length = 559
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/198 (20%), Positives = 83/198 (41%), Gaps = 4/198 (2%)
Query: 146 LERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ R C+ + + L E+ G P + N L++ C L + ++ + M
Sbjct: 232 MHRLCKEHKINEAQLLFGEIGKRGLRPTVVSFNTLINGYCKSGNLDQGFRLKRFMMENRV 291
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD+ +YS++I + + +DA ++ EM + GL+P + +
Sbjct: 292 FPDVFTYSVLINGLCKEGQLDDANKLFLEMC-DRGLVPNDVTFTTLINGHCVTGRADLGM 350
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E+ + + RKG Y ++ G + + A K V+ MT+RG P +++G
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410
Query: 323 AGVGEWKLATVVRQRFAE 340
G+ + A +R+ +
Sbjct: 411 CKEGDLESALEIRKEMVK 428
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 78/190 (41%), Gaps = 25/190 (13%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I +M G PD T N L++ LC + L EA K++ M+ PD +Y+++I
Sbjct: 351 EIYQQMLRKGVKPDVITYNTLINGLCKVGDLREAKKLVIEMTQRGLKPDKFTYTMLIDGC 410
Query: 217 STARKTNDAVEMMKEMVL------NMGLMP------RQGMVIKVAAALRANREMWKAVEM 264
A+E+ KEMV N+ R+G VI+ LR EM
Sbjct: 411 CKEGDLESALEIRKEMVKEGIELDNVAFTALISGFCREGQVIEAERTLR---------EM 461
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E G Y +V+ G + + K + M G +P + ++ GL
Sbjct: 462 LE----AGIKPDDATYTMVIHGFCKKGDVKTGFKLLKEMQCDGHVPGVVTYNVLLNGLCK 517
Query: 325 VGEWKLATVV 334
G+ K A ++
Sbjct: 518 QGQMKNANML 527
>gi|297733951|emb|CBI15198.3| unnamed protein product [Vitis vinifera]
Length = 948
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 20/231 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVADILLEMKSIGYHPDCGTCN 175
AL + Q L G +P ++ ++ C++ S L++M S G P+ N
Sbjct: 282 ALELYQEMLGDGLLP----NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C L EA + + E +PD+ +YSI+I + + +A +++EM
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK-K 396
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G +P + M KA+E+ + KG + +++G Y
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG------YCK 450
Query: 296 AGK--TVMG----MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
AGK MG M +G +P + +++G G K A + + E
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE 501
Score = 41.6 bits (96), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + G P+ T L+ C ++A ++ M + P + Y+I+I +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A M + M N G++P + + KA+E+ + + G +
Sbjct: 243 RISEAESMFRTM-RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++++G + E + A K ++ M G +P I V +++G G
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348
>gi|255543335|ref|XP_002512730.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223547741|gb|EEF49233.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 552
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/168 (26%), Positives = 76/168 (45%), Gaps = 5/168 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L +MK +G PD T N ++ LC +LVEA VL M P +E+Y ++ +
Sbjct: 351 FLDKMKEVGLQPDSTTYNSMIRPLCEGKKLVEARSVLATMIEENISPTMETYHALLEVEN 410
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-IEFLERKGCPIG 276
+ + +E++ M + GL P + V A + A++M IE + + P
Sbjct: 411 SDFEA--TLEVLNRMTV-AGLAPTDDTFLLVLAKFFKLEQAENALKMWIEMKQYEVTP-N 466
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
Y+++VEG + C A + M GF K+++ + E + G
Sbjct: 467 LTHYKILVEGLVRCGLLAKARECYADMRSNGFTDDPKLQKMLKEPVRG 514
>gi|224130398|ref|XP_002320827.1| predicted protein [Populus trichocarpa]
gi|222861600|gb|EEE99142.1| predicted protein [Populus trichocarpa]
Length = 775
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + V ++L EM+ G PD T N L++ L A KV++ M A VP +
Sbjct: 571 RTNKFHRVFEMLKEMEEAGLKPDTITYNTLIAYASKNGDLKFAQKVMRKMIKAGVVPTVA 630
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y VI A N+A+E+ K+M + P + + +L N ++ AV ++E
Sbjct: 631 TYGAVINAYCLNGNGNEAMEIFKDMKAASKVPPNTVIYNILINSLCKNNKVKSAVSLMED 690
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G Y + +G + ++ + + M E P + + E L+ VGE
Sbjct: 691 MKIWGVTPNTTTYNAIFKGLRDEKDLEKVFEFMDRMIEHACNPDYITMEILTEWLSAVGE 750
Score = 38.1 bits (87), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 68/180 (37%), Gaps = 5/180 (2%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKT 222
S+ PD N L+ LC + + E +++ M S + C PD +Y+ +I A +
Sbjct: 376 SVSVEPDVVIYNTLIDGLCKVGRQQEGLGLMERMRSQKGCAPDTITYNCLIDGFCKAGEI 435
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
E+ EM G+ P V + + + AV +R+G Y
Sbjct: 436 EKGKELFDEMN-KEGVAPNVVTVNTLVGGMCRTGRVSSAVNFFVEAQRRGMKGDAVTYTA 494
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
++ + A + M + G P V ++ G + G A+ V AELK
Sbjct: 495 LINAFCNVNNFEKAMELFNEMLKSGCSPDAIVYYTLISGFSQAGRMADASFV---LAELK 551
>gi|297800016|ref|XP_002867892.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
gi|297313728|gb|EFH44151.1| EMB1025 [Arabidopsis lyrata subsp. lyrata]
Length = 658
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 49/216 (22%), Positives = 93/216 (43%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+++L+R + S C+P L + +++R ++ A +L+ M+ GY + +
Sbjct: 308 LDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQR-RAMDGARLLISMEERGYRLNQHIYS 366
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S L + EA + K M+ C P++ YS VI + K N+A E++ M+ +
Sbjct: 367 VLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREGKPNEAKEILNGMI-S 425
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G +P + +A+++ ++ GC Y V+++G
Sbjct: 426 SGCLPNVYTYSSLMKGFFKTGLSEEAIQVWREMDETGCSRNEFCYSVLIDGLCGVGRVKE 485
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A M G P +++GL G+G A
Sbjct: 486 AMMVWSKMLTIGIKPDTVAYSSMIKGLCGIGSMDAA 521
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 4/181 (2%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + + + +L EM+S G P N L+ LC L K++ M C P+
Sbjct: 233 CKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKLVDNMFLKGCFPNE 292
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I + K + AV +++ MV + +P + L R ++
Sbjct: 293 VTYNTLIHGLCLKGKLDKAVSLLERMV-SSKCIPNDVTYGTLINGLVKQRRAMDGARLLI 351
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+E +G + Y V++ G + + A M E+G P I V V++GL G
Sbjct: 352 SMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAEKGCRPNIVVYSAVIDGLCREG 411
Query: 327 E 327
+
Sbjct: 412 K 412
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 75/172 (43%), Gaps = 1/172 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T L+ LC +++ EA +L M S C P Y+++I + + ++
Sbjct: 220 PDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLSRVTKL 279
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ M L G P + + L ++ KAV ++E + C Y ++ G +
Sbjct: 280 VDNMFLK-GCFPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLV 338
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ R + + ++ M ERG+ + ++ GL G+ + A + ++ AE
Sbjct: 339 KQRRAMDGARLLISMEERGYRLNQHIYSVLISGLFKEGKAEEAMTLWKKMAE 390
>gi|356513139|ref|XP_003525271.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g21222-like [Glycine max]
Length = 621
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/216 (21%), Positives = 89/216 (41%), Gaps = 2/216 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L R G P P + L +L+ + V + L M+ G PD T + ++
Sbjct: 290 ALRFLYRMKELGVHPNPVVFNSLIKGYLDA-TDTNGVDEALTLMEEFGIKPDVVTFSTIM 348
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ + + ++ M A PD+ +YSI+ A + A ++ M G+
Sbjct: 349 NAWSSAGLMDNCEEIFNDMVKAGIEPDIHAYSILAKGYVRAGQPRKAESLLTSMS-KYGV 407
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+ + + A +M +A + E + G + YE ++ G E ++ A +
Sbjct: 408 QTNVVIFTTIISGWCAAGKMDRAFSLCEKMHEMGTSPNLKTYETLIWGYGEAKQPWKAEE 467
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M ERG +P + Q V + +G +K A +
Sbjct: 468 ILSTMEERGVVPEMSTMQLVADAWRAIGLFKEANRI 503
>gi|296087509|emb|CBI34098.3| unnamed protein product [Vitis vinifera]
Length = 718
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 71/166 (42%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G PD C+ L+ + E ++ M S +L +Y+++I +
Sbjct: 35 EMQKTGLKPDYNACSALIDGFMREGDIDEVLRIKDVMVSCGIPINLITYNVLIHGLCKFG 94
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K A E++K M+ +G P + M +A+E+++ +E++ Y
Sbjct: 95 KMEKAAEILKGMI-TLGCKPNSRTFCLLIEGYCREHNMGRALELLDEMEKRNLVPSAVSY 153
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ G C++ LA K + MT G P + V ++ G A G
Sbjct: 154 GAMINGLCHCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEG 199
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 72/174 (41%), Gaps = 1/174 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I + ++G PD TC+ + L ++ EA KV + VPD+ +YS +I
Sbjct: 312 IFRHLHALGVLPDVQTCSAFIHGLLKNGRVQEALKVFSELKEKGLVPDVFTYSSLISGFC 371
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A E+ EM L G+ P + + L + ++ +A ++ + + KG
Sbjct: 372 KQGEVEKAFELHDEMCLK-GIAPNIFIYNALVDGLCKSGDIQRARKLFDGMPEKGLEPDS 430
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G + A M +G P+ V +V G G+ + A
Sbjct: 431 VTYSTMIDGYCKSENVAEAFSLFHEMPSKGVQPHSFVYNALVHGCCKEGDMEKA 484
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 46/195 (23%), Positives = 81/195 (41%), Gaps = 5/195 (2%)
Query: 149 RCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
C+ S+A+ LLE M G P+ + L+ + ++ EA ++L GMS + PD+
Sbjct: 162 HCKDLSLANKLLEKMTFSGLKPNVVVYSTLIMGYASEGRIEEARRLLDGMSCSGVAPDIF 221
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
Y+ +I +S A K +A + E + GL P +M +A + +
Sbjct: 222 CYNAIISCLSKAGKMEEASTYLLE-IQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDE 280
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ G Y V++ G + + A + G +P ++ + GL G
Sbjct: 281 MLDHGLMPNNPLYTVLINGHFKAGNLMEALSIFRHLHALGVLPDVQTCSAFIHGLLKNGR 340
Query: 328 WKLATVVRQRFAELK 342
+ A V F+ELK
Sbjct: 341 VQEALKV---FSELK 352
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 39/186 (20%), Positives = 77/186 (41%), Gaps = 1/186 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + + + LLE++ G PD T + ++ EAAK M +P+
Sbjct: 230 LSKAGKMEEASTYLLEIQGRGLKPDAVTFGAFILGYSKTGKMTEAAKYFDEMLDHGLMPN 289
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y+++I A +A+ + + + +G++P L N + +A+++
Sbjct: 290 NPLYTVLINGHFKAGNLMEALSIFRHLHA-LGVLPDVQTCSAFIHGLLKNGRVQEALKVF 348
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
L+ KG Y ++ G + E A + M +G P I + +V+GL
Sbjct: 349 SELKEKGLVPDVFTYSSLISGFCKQGEVEKAFELHDEMCLKGIAPNIFIYNALVDGLCKS 408
Query: 326 GEWKLA 331
G+ + A
Sbjct: 409 GDIQRA 414
>gi|224084127|ref|XP_002307219.1| predicted protein [Populus trichocarpa]
gi|222856668|gb|EEE94215.1| predicted protein [Populus trichocarpa]
Length = 584
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 2/111 (1%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
G +P + L + + C +++ +++ EM +GY P T N L+S C + +
Sbjct: 460 GGIPSALVYDCLIHGFCQEGCVREAL-ELMNEMVFLGYFPVASTFNALISGFCRLGKDGS 518
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
A K+L+ M CVPD SYS +I A+ + A ++ +MV N G+ P
Sbjct: 519 ALKLLEDMVGRGCVPDTGSYSPLIDALCRKKSFQKAASLLLQMVEN-GITP 568
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 67/154 (43%), Gaps = 13/154 (8%)
Query: 156 ADILLEMK-SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A +LLE S+G+ PD T +V LC + ++ EA ++L+ + S V D+ +++ +I
Sbjct: 239 ALVLLEKSFSLGFVPDVVTVTKVVEILCNVGRVTEAVEILERVESKGGVVDVVAHNTLIK 298
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K ++KEM G +P + + + + A++M ++ G
Sbjct: 299 GFCKFGKVKLGHGLLKEME-RKGCLPNADTYNALISGFCESGMLESALDMFNDMKTDGIN 357
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
F ++ +++G G TE GF
Sbjct: 358 CNFVTFDTLIKGLFS-----------RGRTEDGF 380
>gi|255540805|ref|XP_002511467.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223550582|gb|EEF52069.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 482
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/219 (19%), Positives = 89/219 (40%), Gaps = 46/219 (21%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A + + ++ G +P + +A ++ C+ SV + +L EM GY P+ T N
Sbjct: 285 ARNVFNQMVKDGVLP----SVATFNALIQILCKKDSVENAILIFEEMVKRGYVPNSITYN 340
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ LC + ++ A ++++ M +C P++++Y+I+I A
Sbjct: 341 LVIRGLCHVGEMQRAMELMERMEDDDCEPNVQTYNILIRYFCDA---------------- 384
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL---ECRE 292
E+ K +++ + + C Y +++
Sbjct: 385 --------------------GEIEKGLDLFQKMGNGDCLPNLDTYNILINSMFVRKNSDN 424
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++AGK ++ M +RGF+P +V++GL G A
Sbjct: 425 LLVAGKLLVEMVDRGFLPRKLTFNRVLDGLLLTGNQDFA 463
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 69/300 (23%), Positives = 118/300 (39%), Gaps = 42/300 (14%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP-----FSFLSNFPQN-HRIKVIDEML 86
T +T+ ++ + Q P+L+ + + N P F LS+ P H+ D +
Sbjct: 40 TNSQTLAESLHSPSIQWTPQLVNTILKRLWNHGPKALHFFKILSHHPSYCHQASSFDHAI 99
Query: 87 ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
+ LR D+ + L S R+ R G P P+ +++ +
Sbjct: 100 DICARLR---------DFRTLWFLVSR----------MRSCRLG--PSPRTFAIIAERYA 138
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA---IDQLVEAAKVLKGMSSAECV 203
++V + + M G D + N ++ LC ++ K LKG A+CV
Sbjct: 139 AMGKPHRAVT-VFMSMHEYGCFQDLSSFNTILDVLCKSKRVEMAYNLFKALKGKFKADCV 197
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANR--EMWK 260
SY+I++ ++T A+EM+KEMV GL P I + RA + E W
Sbjct: 198 ----SYNIIVNGWCLIKRTPKALEMLKEMV-ERGLTPNLTTYNIMLNGYFRAGQTNEAWG 252
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
+E +RK C I Y V+ G E A M + G +P + +++
Sbjct: 253 F--FLEMKKRK-CDIDVVTYTSVIHGLGVVGEIKRARNVFNQMVKDGVLPSVATFNALIQ 309
>gi|449497581|ref|XP_004160441.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Cucumis sativus]
Length = 681
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESY 209
S + + L+EM PD T N ++ C + + EA KVL M + C PD ++
Sbjct: 426 NSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTF 485
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ +I + + ++++++ +++ G++P VI A +R ++ +A + + +
Sbjct: 486 TTIIFGLLNVGRIRESLDILYKVMPEKGIVPG---VITYNATIRGLFKLQQANQAMNTFD 542
Query: 270 ---RKGCPIGFQGYEVVVEGCLECRE 292
R G Y VV++G +C +
Sbjct: 543 RMVRNGIQADSTTYAVVIDGLCDCNQ 568
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA---VEMMKEM 232
+LV SLC + E + + M + VP+ +Y +I ++ A++ + A V +M++
Sbjct: 276 HLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKK 335
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
LN GL+ ++ ++ R VE +EF G Y+V++EG C+E
Sbjct: 336 GLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEF----GYSPSEHTYKVLLEGL--CKE 389
>gi|449493486|ref|XP_004159312.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 772
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G+ PD T N V +LC EA +L+ M S +PD +Y+ +I
Sbjct: 485 EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNG 544
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
A E+ EM L+ G+ P + A A + + A + K P Y
Sbjct: 545 HLRKAREVFNEM-LSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITY 603
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G R A K M E+G +P ++ +G W+ A
Sbjct: 604 NAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEA 654
Score = 45.1 bits (105), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 139 LLLSSAWLERRCQS---QSVADILL-----------EMKSIGYHPDCGTCNYLVSSLCAI 184
L+ ++ W+ R S V D+L+ +M G PD CN ++ L
Sbjct: 134 LMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDE 193
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+ L +A V M P + +Y+ ++ + + + A+E++ EM G P
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEMQ-ERGCYPNDVT 252
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304
+ L E+ +A +IE + G + Y ++ G + ++ A V M
Sbjct: 253 YNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV 312
Query: 305 ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
R P + ++ GL +W T VR RF+++
Sbjct: 313 NRRAFPTLSTYNTLMYGLC---KWVQVTGVRLRFSDM 346
>gi|449440630|ref|XP_004138087.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
gi|449524136|ref|XP_004169079.1| PREDICTED: pentatricopeptide repeat-containing protein At3g48250,
chloroplastic-like [Cucumis sativus]
Length = 632
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 78/156 (50%), Gaps = 2/156 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I+ M++ GY PD T + LV LC +L EA KVL M + C+PD+++++I+I
Sbjct: 386 NIVKSMRNAGYEPDNVTYSQLVFGLCKARRLEEARKVLDEMEAQGCIPDIKTWTILIQGH 445
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + + A+ +M+ P ++ + + +++ A +++ L K
Sbjct: 446 CNANELDIALVCFAKMI-EKNCDPDADLLDVLISGFLNQKKLNGAYQLLIELTNKAHVRP 504
Query: 277 FQG-YEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
+Q Y+ +++ LE R+ A + M ++ + P+
Sbjct: 505 WQATYKQLIKNLLEVRKLEEAIALLRLMKKQNYPPF 540
>gi|15234349|ref|NP_194530.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75208278|sp|Q9SUD8.1|PP340_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g28010
gi|4455360|emb|CAB36770.1| putative protein [Arabidopsis thaliana]
gi|7269655|emb|CAB79603.1| putative protein [Arabidopsis thaliana]
gi|332660020|gb|AEE85420.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 704
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 25/296 (8%)
Query: 49 QIPELLGSFEEACQNPNPFSFLSNF-------PQNHRI--KVIDEMLES--FIPLRPRSR 97
Q+ + F++A + + +F N +NH + +MLE+ FI
Sbjct: 53 QLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINF----- 107
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVA 156
++ LL +Q + A +L L+ G V +LL L R +
Sbjct: 108 --VSLSGLLECYVQ-MRKTGFAFGVLALMLKRGFAFNVYNHNILLKG--LCRNLECGKAV 162
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ PD + N ++ C +L +A ++ M + C L ++ I+I A
Sbjct: 163 SLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAF 222
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPI 275
A K ++A+ +KEM MGL + + E+ + + E LER P
Sbjct: 223 CKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPC 281
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + + A + M ERG P + +++GL GVG+ K A
Sbjct: 282 AIT-YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSA 200
+ + C+ VAD I+ MK PD T N L+ LCA L EA+K+L M S+
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSS 418
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---- 256
PD+ SY+ +I + + + A+++ +V +G R I + + L+A
Sbjct: 419 YTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKA 478
Query: 257 -EMWKAV 262
E+WK +
Sbjct: 479 MELWKQI 485
>gi|186510147|ref|NP_188293.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75274280|sp|Q9LUR2.1|PP238_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At3g16710, mitochondrial; Flags: Precursor
gi|11994626|dbj|BAB02763.1| unnamed protein product [Arabidopsis thaliana]
gi|332642334|gb|AEE75855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 507
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 111 QSLHPLPL--ALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKS 164
LH L AL + R + S P+P I RLL A + R V + +M+
Sbjct: 57 NGLHNLQFNDALDLFTRMVHSR--PLPSIIDFTRLLSVIAKMNR---YDVVISLFEQMQI 111
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+G P TCN ++ +C Q A+ L M PDL +++ ++ + D
Sbjct: 112 LGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIED 171
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ + + +L MG P + L NR + AVE+ + G Y +V
Sbjct: 172 AIALFDQ-ILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G E + A + M +R P + +++ VG+
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 5/225 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+A+ + L G P L + R + +V ++ +M + G P+ T N LV
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV-ELFNQMGTNGSRPNVVTYNALV 230
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC I + +AA +L+ M P++ +++ +I A K +A E+ M+ M +
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI-QMSV 289
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L + +A +M +ER GC Y ++ G + + K
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMK 349
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
M+++G + +++G VG V ++ F ++ S
Sbjct: 350 IFYEMSQKGVVANTITYTVLIQGYCLVGR---PDVAQEVFNQMSS 391
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R+GC P I L + C+S+ V D I EM G + T L+ C +
Sbjct: 321 RNGCYPNEVIYTTLIHGF----CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV---EMMKEMVLNMGLMPR 241
+ A +V MSS PD+ +Y++++ + K A+ E M++ +++ ++
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTY 436
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKT 299
++I+ L ++ A ++ L KG Y ++ G CR ++ A
Sbjct: 437 T-IIIQGMCKL---GKVEDAFDLFCSLFSKGMKPNVITYTTMISG--FCRRGLIHEADSL 490
Query: 300 VMGMTERGFIP 310
M E GF+P
Sbjct: 491 FKKMKEDGFLP 501
>gi|255583659|ref|XP_002532584.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223527693|gb|EEF29801.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 895
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 102/244 (41%), Gaps = 23/244 (9%)
Query: 86 LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAW 145
LES++P Y+ LL L+ + L A +L + G P + +A
Sbjct: 360 LESYVP------EIFHYNALLCRLLKE-NRLTEACDLLMEMMEDGFSPDK----VTMNAA 408
Query: 146 LERRCQSQSVADILLEMKS----IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
L C++ + D+ L++ + G P TCNYL++SLC + +A VLK S
Sbjct: 409 LSFFCKA-GMVDVALDLYNCKSEFGLSPSTMTCNYLINSLCREGNVDDAYHVLKSSSEHG 467
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMV---LNMGLMPRQGMVIKVAAALRANREM 258
P ++S++ A+ K VEMM E+ L +P M K +AL R +
Sbjct: 468 YFPGKRAFSMLTDALHREGK----VEMMNELFFWALERNFIPSDSMYDKFISALCKARRL 523
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+ L R Y ++ G + +A + ++ M ++G +P + + V
Sbjct: 524 EDGYLIHGELNRFNRVAKKSTYSNLIHGFNKFNRGDIAARLLIEMQDKGHLPARTLFRAV 583
Query: 319 VEGL 322
+ L
Sbjct: 584 IRSL 587
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 62/133 (46%), Gaps = 7/133 (5%)
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y++ + + P +A + + RSG P +L+ ++L +S+ ++D L
Sbjct: 615 YNFFIDGAGHAKKP-DIARKVFEMMQRSGIEPNQSTNILMLQSYL----KSERISDALNF 669
Query: 162 MKSIGYHPDCGT--CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
++G G N +V LC ++++ A M S VP +E Y ++I + +
Sbjct: 670 FDAVGQRRKIGRKLYNTMVVGLCKVNKVDSALSFFLEMQSNGMVPSVECYEVLIMLLCSN 729
Query: 220 RKTNDAVEMMKEM 232
++ + A+ ++ ++
Sbjct: 730 KRYSTAITLITDL 742
>gi|115445449|ref|NP_001046504.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|50251963|dbj|BAD27898.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113536035|dbj|BAF08418.1| Os02g0266200 [Oryza sativa Japonica Group]
gi|125581581|gb|EAZ22512.1| hypothetical protein OsJ_06176 [Oryza sativa Japonica Group]
gi|215704610|dbj|BAG94238.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215737116|dbj|BAG96045.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 632
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 1/211 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L L + + S C+P + A E + + V MK G P T +
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYS 410
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C +++ +A +L+ M P +Y +I A+ A++ + A E+ +E+ N
Sbjct: 411 ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G + + + +A R + A+ + + + + GC Y ++ G
Sbjct: 471 CGSSSARVYAVMIKHLGKAGR-LDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDE 529
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A T+ M E G +P I ++ GLA G
Sbjct: 530 ALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L A+ + + GC P V L+S L R C + +M+ G PD +
Sbjct: 492 LDDAINLFDEMSKLGCTPNVYAYNALMSG--LARACMLDEALTTMRKMQEHGCLPDINSY 549
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N +++ L A ++L M ++ PD SY+ V+ A+S A +A E+MKEM
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 91/225 (40%), Gaps = 7/225 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +G P +I ++ S + + + EM+ + PD T L+
Sbjct: 249 AIRLLNEMKENGMQPTAKIYTMIISLFFKLD-NVHGALSLFEEMRYMYCRPDVFTYTELI 307
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA M +C PD + +I + A + +D +++ +EM ++
Sbjct: 308 RGLGKAGRIDEAYHFYHEMQREDCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS-HC 366
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQ--GYEVVVEGCLECREYIL 295
+P + AL ++ + E+ + ER KG I Y ++++G +
Sbjct: 367 IPNVVTYNTIIKALFESKS--RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEK 424
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E+GF P +++ L + LA + Q E
Sbjct: 425 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
F PC + SL + A AK Y EL +E C + + +
Sbjct: 437 FPPCPAAYCSL------------IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 484
Query: 75 QNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+ +D+ + F + P + AY+ L+S L L AL +++ GC+
Sbjct: 485 HLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS-GLARACMLDEALTTMRKMQEHGCL 543
Query: 133 P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P + ++L+ L + ++L MK+ PD + N ++S+L EAA
Sbjct: 544 PDINSYNIILNG--LAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601
Query: 192 KVLKGMSSAECVPDLESYSIVIGAM 216
+++K M++ DL +YS ++ A+
Sbjct: 602 ELMKEMNALGFEYDLITYSSILEAI 626
>gi|357115068|ref|XP_003559314.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Brachypodium distachyon]
Length = 495
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 75/155 (48%), Gaps = 7/155 (4%)
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+E+ G PD T N+L+ +LC +L A MS C P+ ++ I+I A+ +
Sbjct: 185 MEIVKAGVLPDADTLNWLIEALCGAGRLDLALIQFDRMSKKRCTPNSHTFKILITALCSH 244
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ +++VE+ ++M L + +P V+ V + + +E A+ ++ + +GC +
Sbjct: 245 GRADESVELFEKM-LQLRCIPDISFYFQVLPVFSLFQLKKEK-DALLILAQMLMEGCVLD 302
Query: 277 FQGYEVVVEGCLECREYILAGKTVMG-MTERGFIP 310
Y V++ C +E +L + M GF+P
Sbjct: 303 SYAYNVLLR-CFLTKETVLEAAILFNRMVNDGFVP 336
>gi|297736854|emb|CBI26055.3| unnamed protein product [Vitis vinifera]
Length = 653
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
IAY+ +L+ L + AL I + R VP +L+ L R + + +I
Sbjct: 126 IAYNCILT-CLGKKRRVEEALRIFEEMKRDAVPNVPTYNILID--MLCREGKLNAALEIR 182
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M+ G P+ T N ++ LC +L EA + +GM C P+ ++S +I +
Sbjct: 183 DDMERAGLFPNVLTVNIMIDRLCKAQKLEEACSIFEGMDDKVCTPNAVTFSSLIDGLGKC 242
Query: 220 RKTNDAVEMMKEMVLNMGLMP 240
+ +DA + ++M L+ G +P
Sbjct: 243 GRVDDAYSLYEKM-LDCGHVP 262
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 85/199 (42%), Gaps = 4/199 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+A ++ C+S V +L EMK G+ P T ++ L ID+L EA + + S
Sbjct: 373 NAVIDGFCKSGKVNKAYQLLEEMKVKGHPPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKS 432
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
++ YS +I + ++A +M+E+ + GL P + AL E+
Sbjct: 433 NGIKLNVVVYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCLLDALVKAEEIN 491
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A+ + ++ CP Y +++ G R++ A M + G P ++
Sbjct: 492 EALICFQSMKDLKCPPNQITYSILINGLCRVRKFNKAFVFWQEMQKLGLKPNTITYTTMI 551
Query: 320 EGLAGVGEWKLATVVRQRF 338
GLA G A+ + RF
Sbjct: 552 SGLAKAGNILEASGLFSRF 570
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ E+ G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLKCPPNQITYSILINGLC 520
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK N A +EM +GL P + + L + +A + + G
Sbjct: 521 RVRKFNKAFVFWQEM-QKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDS 579
Query: 278 QGYEVVVEG 286
Y ++EG
Sbjct: 580 ASYNAMIEG 588
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 43/224 (19%), Positives = 90/224 (40%), Gaps = 8/224 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
I + + +GC P L L + +++ + +++ + E+ + G+ PD + + L+
Sbjct: 286 IYKEMVHTGCSP----DLTLINTYMDCVFKAGETEKGRALFREINAHGFIPDARSYSILI 341
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L E ++ M CV D +Y+ VI + K N A ++++EM + G
Sbjct: 342 HGLVKAGLANETYELFYAMKEQGCVLDTHAYNAVIDGFCKSGKVNKAYQLLEEMKVK-GH 400
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L + +A + E + G + Y +++G + A
Sbjct: 401 PPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSNGIKLNVVVYSSLIDGFGKVGRIDEAYL 460
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + ++G P + +++ L E A + Q +LK
Sbjct: 461 IMEELMQKGLTPNVYTWNCLLDALVKAEEINEALICFQSMKDLK 504
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ +G P+ T ++S L ++EA+ + + +PD SY+ +I +S+A
Sbjct: 534 EMQKLGLKPNTITYTTMISGLAKAGNILEASGLFSRFKANGGIPDSASYNAMIEGLSSAN 593
Query: 221 KTNDAVEMMKEMVL 234
K DA + +E L
Sbjct: 594 KAMDAYALFEETRL 607
>gi|356547370|ref|XP_003542086.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g65820-like [Glycine max]
Length = 628
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/206 (24%), Positives = 86/206 (41%), Gaps = 8/206 (3%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
+ E F LR R +P + + L Y L A +L + +G P +++
Sbjct: 217 VKEAASLFEELRYRWKPSVKHFTSLLYGWCKEGKLMEAKHVLVQMKDAGIEP----DIVV 272
Query: 142 SSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ L Q+ + D +L EM+ G P+ + L+ SLC ++L EA +V M
Sbjct: 273 YNNLLGGYAQADKMGDAYDLLKEMRRKGCEPNATSYTVLIQSLCKHERLEEATRVFVEMQ 332
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C DL +YS +I K E++ EM+ G P Q + + A E+
Sbjct: 333 RNGCQADLVTYSTLISGFCKWGKIKRGYELLDEMI-QQGHFPNQVIYQHIMVAHEKKEEL 391
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVV 284
+ E++ +++ GC Y V+
Sbjct: 392 EECKELVNEMQKIGCAPDLSIYNTVI 417
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 81/201 (40%), Gaps = 3/201 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L GC P + L A R+ S A L E + P L+
Sbjct: 185 AVQVLDEMPNYGCEPDEYVFGCLLDAL--RKNGSVKEAASLFEELRYRWKPSVKHFTSLL 242
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C +L+EA VL M A PD+ Y+ ++G + A K DA +++KEM G
Sbjct: 243 YGWCKEGKLMEAKHVLVQMKDAGIEPDIVVYNNLLGGYAQADKMGDAYDLLKEM-RRKGC 301
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + +L + + +A + ++R GC Y ++ G + + +
Sbjct: 302 EPNATSYTVLIQSLCKHERLEEATRVFVEMQRNGCQADLVTYSTLISGFCKWGKIKRGYE 361
Query: 299 TVMGMTERGFIPYIKVRQKVV 319
+ M ++G P + Q ++
Sbjct: 362 LLDEMIQQGHFPNQVIYQHIM 382
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 37/185 (20%), Positives = 74/185 (40%), Gaps = 14/185 (7%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ IG PD N ++ C + ++ E ++ M S+ P ++++ I+I
Sbjct: 400 EMQKIGCAPDLSIYNTVIRLACKLGEVKEGVRLWNEMESSGLSPSIDTFVIMINGFLEQG 459
Query: 221 KTNDAVEMMKEMVLNMGLM--PRQGMVIKV------AAALRANREMWKAVEMIEFLERKG 272
+A E KEMV GL P+ G + ++ A L ++ W + KG
Sbjct: 460 CLVEACEYFKEMV-GRGLFAAPQYGTLKELMNSLLRAEKLEMAKDAWNCI-----TASKG 513
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
C + + + + A + M ++ +P K++ GL + + A
Sbjct: 514 CQLNVSAWTIWIHALFSKGHVKEACSFCIAMMDKDLMPQPDTFAKLMRGLKKLYNREFAA 573
Query: 333 VVRQR 337
+ ++
Sbjct: 574 EITEK 578
>gi|356530205|ref|XP_003533674.1| PREDICTED: pentatricopeptide repeat-containing protein At2g38420,
mitochondrial-like [Glycine max]
Length = 499
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 41/72 (56%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM IG PD T N ++ LC + + EA +++ M C P++ +Y+ ++GA+S A
Sbjct: 321 EMLVIGLIPDAYTYNVYINGLCKQNNVAEALQIVASMEELGCKPNVVTYNTLLGALSVAG 380
Query: 221 KTNDAVEMMKEM 232
A E+MKEM
Sbjct: 381 DFVKARELMKEM 392
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 64/279 (22%), Positives = 116/279 (41%), Gaps = 15/279 (5%)
Query: 53 LLGSFEEACQNPNP---FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109
LL SF+ +P P F L +++ I +L L P+ YL+ +
Sbjct: 69 LLDSFKAYSIDPTPKAYFFVLKTLTSTSQLQDIPPVLYHLEHLEKFETPESILVYLIRFY 128
Query: 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
S + A+ + R R C P V + L+LS +R C + V +ILL+ + +
Sbjct: 129 GLS-DRVQDAVDLFFRIPRFRCTPTVCSLNLVLSLLCRKRDCL-EMVPEILLKSQHMNIR 186
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
+ T L+ +LC I ++ A K+L M D + S+VI A+ + A +
Sbjct: 187 VEESTFRVLIRALCRIKRVGYAIKMLNFMVEDGYGLDEKICSLVISALCEQKDLTSAEAL 246
Query: 229 -----MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
M+++ G+M M + ++ R M A++++ ++ G + Y +V
Sbjct: 247 VVWRDMRKLGFCPGVMDYTNM---IRFLVKEGRGM-DALDILNQQKQDGIKLDVVSYTMV 302
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ G + EY++ + M G IP + GL
Sbjct: 303 LSGIVAEGEYVMLDELFDEMLVIGLIPDAYTYNVYINGL 341
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 29/142 (20%), Positives = 61/142 (42%), Gaps = 1/142 (0%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
+L + + DIL + K G D + ++S + A + V ++ M +P
Sbjct: 270 FLVKEGRGMDALDILNQQKQDGIKLDVVSYTMVLSGIVAEGEYVMLDELFDEMLVIGLIP 329
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
D +Y++ I + +A++++ M +G P + AL + KA E+
Sbjct: 330 DAYTYNVYINGLCKQNNVAEALQIVASME-ELGCKPNVVTYNTLLGALSVAGDFVKAREL 388
Query: 265 IEFLERKGCPIGFQGYEVVVEG 286
++ + KG + Y +V++G
Sbjct: 389 MKEMGWKGVGLNLHTYRIVLDG 410
>gi|414591641|tpg|DAA42212.1| TPA: hypothetical protein ZEAMMB73_141452 [Zea mays]
Length = 472
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 79/175 (45%), Gaps = 12/175 (6%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR +Y Y +L H LALA + LR+G ++ +++S L+ C++
Sbjct: 70 PRVLSPTSYTYAILMDCCTRAHRPELALAFFGQLLRTGL----RVDAIIASHLLKGFCEA 125
Query: 153 QSVA---DILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVPDL 206
+ DILL +G PD + N L+ SLC + +A +L+ M+ C PD+
Sbjct: 126 KRTDEALDILLHRTPELGCVPDVFSYNILLKSLCNQGKSGQADNLLRMMAEGGTVCSPDV 185
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
+Y+ VI N A ++ KEMV G+ P V AL R M KA
Sbjct: 186 VAYNTVIDGFFKEGDVNKACDLFKEMV-QRGIPPDLVTYNSVVHALCKARAMDKA 239
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/154 (25%), Positives = 66/154 (42%), Gaps = 8/154 (5%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY---HPDCGTCNYL 177
+L RT GCVP V +LL S + + AD LL M + G PD N +
Sbjct: 135 LLHRTPELGCVPDVFSYNILLKSLCNQGK---SGQADNLLRMMAEGGTVCSPDVVAYNTV 191
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + +A + K M PDL +Y+ V+ A+ AR + A +++MV N
Sbjct: 192 IDGFFKEGDVNKACDLFKEMVQRGIPPDLVTYNSVVHALCKARAMDKAEAFLRQMV-NKR 250
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
++P + + + +AV + + + R
Sbjct: 251 VLPNNWTYNNLIYGYSSTGQWKEAVRVFKEMRRH 284
>gi|449432854|ref|XP_004134213.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g06920-like [Cucumis sativus]
Length = 904
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S V +L EMK+ G+ P T ++ L ID+L EA + + S ++
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNV 689
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + ++A +M+E+ + GL P + AL E+ +A+ +
Sbjct: 690 VIYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ C + Y +++ G + R++ A M ++GF P + ++ GLA G
Sbjct: 749 SMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAG 808
Query: 327 EWKLATVVRQRFAE 340
A + ++F E
Sbjct: 809 NIVEADTLFEKFKE 822
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
I LR GC P LLL + +++ + + + + E+K++G+ PD + L+
Sbjct: 536 IYNEMLRLGCSP----DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L EA ++ M CV D +Y+ VI + K N A ++++EM G
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GH 650
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L + +A + E + KG + Y +++G + A
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + ++G P + +++ L E A V Q +LK
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ E+ G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK N A +EM G P + + L + +A + E + KG
Sbjct: 771 KIRKFNKAFVFWQEMQ-KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADS 829
Query: 278 QGYEVVVEG 286
Y ++EG
Sbjct: 830 AIYNAIIEG 838
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 42/190 (22%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY---LLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
++E +E F + + AY Y ++ Y + A ++L+R R GC+P V
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG--KFEDAYSLLERQRRKGCIPSVVSY 378
Query: 138 RLLLSSAWLERRCQ-----------------SQSVADILLE-----------------MK 163
+LS L R+ Q + S +I+++ MK
Sbjct: 379 NCILSC--LGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
G P+ T N +V LC +L +A + +G+ C PD +Y +I + + +
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496
Query: 224 DAVEMMKEMV 233
+A ++ ++M+
Sbjct: 497 EAYKLYEQML 506
Score = 42.0 bits (97), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 117/300 (39%), Gaps = 46/300 (15%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
+DE L+ F ++ + P ++ ++ L L AL + +G P ++
Sbjct: 391 VDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFP----NVIT 446
Query: 142 SSAWLERRCQSQSVADILLEMKSIGY---HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ ++R C++Q + D + + + PD T L+ L ++ EA K+ + M
Sbjct: 447 VNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML 506
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-------------------------- 232
A +P+ Y+ +I + D ++ EM
Sbjct: 507 DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566
Query: 233 --------VLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+ N+G +P + I + ++A +A E+ ++ +GC + + Y V
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH-EAYELFYTMKEQGCVLDTRAYNTV 625
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
++G + + A + + M +G P + V++GLA + A ++ F E KS
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML---FEEAKS 682
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G+ P TC +V S +L EA ++ M + P +Y+ +IGA+S
Sbjct: 152 ILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALS 211
Query: 218 TARKTNDAVEMMKEM 232
T+R ++ + + ++M
Sbjct: 212 TSRDSDCMLTLFQQM 226
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 8/192 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +L EMKS PD N + ++ A K M + V D
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKFFHEMKANGLVLDDV 306
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGL---MPRQGMVIKVAAALRANREMWKAVEM 264
+Y+ +IG + A + N+AVE+ + M N + M++ A + A +
Sbjct: 307 TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK----FEDAYSL 362
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E RKGC Y ++ CL + + ++ IP + +++ L
Sbjct: 363 LERQRRKGCIPSVVSYNCIL-SCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCK 421
Query: 325 VGEWKLATVVRQ 336
G+ + A VVR
Sbjct: 422 AGKLETALVVRD 433
>gi|357494043|ref|XP_003617310.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355518645|gb|AET00269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 716
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 5/172 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM +G P+ T N ++ C + + EA +V M VPDL S+S ++G S
Sbjct: 316 VLDEMLGVGLCPNAATFNPMLVESCRKEDVWEAERVFNEMLQRGVVPDLISFSSIVGVFS 375
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A+ ++M +GL+P + + N ++ A++M + +GC +
Sbjct: 376 RNGELGRALAYFEKMK-GVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDV 434
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G CR +L A + M ERG P ++ G G
Sbjct: 435 VTYNTLLNGL--CRGKMLDDADELFKEMVERGVFPDFYTLTTLIHGYCKDGN 484
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 68/166 (40%), Gaps = 1/166 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+MK +G PD L++ C D + A K+ M CV D+ +Y+ ++ + +
Sbjct: 389 KMKGVGLVPDTVIYTILINGYCRNDDVSGALKMRNEMVERGCVMDVVTYNTLLNGLCRGK 448
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+DA E+ KEMV G+ P + + + M KA+ + E + + Y
Sbjct: 449 MLDDADELFKEMV-ERGVFPDFYTLTTLIHGYCKDGNMTKALSLFETMTLRSLKPDVVTY 507
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+++G + E A + M R P ++ G +G
Sbjct: 508 NTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLG 553
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 75/175 (42%), Gaps = 7/175 (4%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ C + ++ +A ++ M S E P S+SI+I + ++A +
Sbjct: 502 PDVVTYNTLMDGFCKVGEMEKAKELWYDMISREIFPSYISFSILINGFCSLGLVSEAFRL 561
Query: 229 MKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
EM G+ P +IK LRA + KA + + + +G P Y ++
Sbjct: 562 WDEMK-EKGIKPTLVTCNTIIK--GYLRAG-NLSKANDFLNTMISEGVPPDCITYNTLIN 617
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ + A + M ERG +P + ++ G + G + A +V + +
Sbjct: 618 SFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMID 672
Score = 42.4 bits (98), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 54/119 (45%), Gaps = 2/119 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D L M S G PDC T N L++S + A ++ M +P+L +Y+ ++G
Sbjct: 595 DFLNTMISEGVPPDCITYNTLINSFVKEENFDRAFFLINNMEERGLLPNLVTYNAILGGF 654
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-IEFLERKGCP 274
S + +A EM+ +++ G+ P + + + M +A + E L+R P
Sbjct: 655 SRHGRMQEA-EMVLHKMIDKGINPDKSTYTSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/150 (22%), Positives = 57/150 (38%), Gaps = 1/150 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMK G P TCN ++ L +A L M S PD +Y+ +I +
Sbjct: 564 EMKEKGIKPTLVTCNTIIKGYLRAGNLSKANDFLNTMISEGVPPDCITYNTLINSFVKEE 623
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A ++ M GL+P + + M +A ++ + KG Y
Sbjct: 624 NFDRAFFLINNME-ERGLLPNLVTYNAILGGFSRHGRMQEAEMVLHKMIDKGINPDKSTY 682
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIP 310
++ G + A + M +RGF+P
Sbjct: 683 TSLINGYVSKDNMKEAFRVHDEMLQRGFVP 712
>gi|255661014|gb|ACU25676.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 376
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/159 (23%), Positives = 76/159 (47%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L +A VL GM + C P+ Y+ +I + A K DA+ +++EM
Sbjct: 135 MINGLCKEAKLDKAVSVLNGMIKSGCKPNAHVYNALINGLVGASKFEDAIRVLREMGTTH 194
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLEC---RE 292
P + L +A ++++ + KG Y ++++G CL+C +
Sbjct: 195 -FSPTVVTYSTLINGLCKGERFGEAYDLVKEMLDKGLNPSVITYSLLIKGLCLDCKVEKA 253
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ L + + +GF P +++ ++ GL VG+ +LA
Sbjct: 254 FQLWNQVI----SKGFKPDVQMHNIMIHGLCSVGKMQLA 288
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 49/231 (21%), Positives = 97/231 (41%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A +R + G + +++ L + + +L M G
Sbjct: 108 GYLNKSLHVLEIA----ER--KGGVLDAFAYSAMING--LCKEAKLDKAVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L + +A +VL+ M + P + +YS +I + + +A
Sbjct: 160 CKPNAHVYNALINGLVGASKFEDAIRVLREMGTTHFSPTVVTYSTLINGLCKGERFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+++KEM L+ GL P + L + ++ KA ++ + KG Q + +++ G
Sbjct: 220 DLVKEM-LDKGLNPSVITYSLLIKGLCLDCKVEKAFQLWNQVISKGFKPDVQMHNIMIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+++ A V+ R
Sbjct: 279 LCSVGKMQLALSLYFNMNRWDCAPNLVTHNTLMEGFYKDGDFRNALVIWAR 329
>gi|255556711|ref|XP_002519389.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541456|gb|EEF43006.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 634
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 71/169 (42%), Gaps = 2/169 (1%)
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
CN+ LC I + +A V++ M S +PD +YS VIG + A K A ++ +EM
Sbjct: 91 CNF-TRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEKAFQLFQEMK 149
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
N G+ P + + +A + +++ GC Y ++ L+ R+
Sbjct: 150 RN-GITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIHAYLKTRKL 208
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
A + M G +P I +++G GE + A + R K
Sbjct: 209 SRANEIFEMMLSNGCVPNIVTYTALIDGHCKAGETEKACQIYARMKNDK 257
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/275 (21%), Positives = 111/275 (40%), Gaps = 21/275 (7%)
Query: 55 GSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLH 114
G E+ACQ + +N ++ + D + I P + L L H
Sbjct: 241 GETEKACQ-------IYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAH 293
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDC 171
+ A +L+ GC P ++ A ++ C+ ++ +M G P+
Sbjct: 294 KVKEARDLLETMSLEGCEP----NQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNV 349
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE---M 228
T + L+ L +L A KVL M C P++ Y+ ++ + KT++A M
Sbjct: 350 YTYSSLIDKLFKDKRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLM 409
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M+E ++ M+ A R +R +E+++ + KGC F Y V++ C
Sbjct: 410 MEEKGCYPNVVTYTAMIDGFGKAGRVDR----CLELLQLMTSKGCAPNFITYRVLINHCC 465
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A K + M + + +I + +KV+EG +
Sbjct: 466 AAGLLDDAHKLLEEMKQTYWPKHIGMYRKVIEGFS 500
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 65/314 (20%), Positives = 126/314 (40%), Gaps = 52/314 (16%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP--- 115
E C+ PN + + ++ +DE E F + Y Y S + L
Sbjct: 308 EGCE-PNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTY--SSLIDKLFKDKR 364
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCG 172
L LAL +L + L + C P +++ + ++ C+ + ++L M+ G +P+
Sbjct: 365 LDLALKVLTKMLENSCAP----NVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVV 420
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T ++ ++ ++L+ M+S C P+ +Y ++I A +DA ++++EM
Sbjct: 421 TYTAMIDGFGKAGRVDRCLELLQLMTSKGCAPNFITYRVLINHCCAAGLLDDAHKLLEEM 480
Query: 233 VLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG----- 286
P+ GM KV + E ++ ++ L G Y+++++
Sbjct: 481 --KQTYWPKHIGMYRKVIEGF--SHEFVASLGLLAELSEDGSVPILPVYKLLIDNFIKAG 536
Query: 287 ----CLECRE------------YI-------------LAGKTVMGMTERGFIPYIKVRQK 317
LE E Y+ A K MT RGF+P + +
Sbjct: 537 RLEMALELHEELSSFSAAYQNTYVSLIESLTLACKVDKAFKLYSDMTRRGFVPELSMLVC 596
Query: 318 VVEGLAGVGEWKLA 331
+++GL VG+W+ A
Sbjct: 597 LIKGLLRVGKWEEA 610
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 64/358 (17%), Positives = 137/358 (38%), Gaps = 39/358 (10%)
Query: 3 IGAIKSCRSLVNFRPCLL-------QFSSLRSMSSL------RTLEETVRAAVDAKDYQQ 49
+G + + ++ NF CL ++ +R M S T + + +A ++
Sbjct: 81 MGVVLNKVNVCNFTRCLCCIGKFEKAYNVIREMMSKGFIPDSSTYSKVIGYLCNASKVEK 140
Query: 50 IPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSY 108
+L + P+ +++ + + ++ +I++ F ++ P + L +
Sbjct: 141 AFQLFQEMKRNGITPDVYTYTTLLDRFCKVGLIEQARNWFDEMQQDGCAPNVVTYTALIH 200
Query: 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKSI 165
L A I + L +GCVP ++ +A ++ C +++ I MK+
Sbjct: 201 AYLKTRKLSRANEIFEMMLSNGCVP----NIVTYTALIDGHCKAGETEKACQIYARMKND 256
Query: 166 GY-----------------HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
P+ T LV LC ++ EA +L+ MS C P+
Sbjct: 257 KVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLETMSLEGCEPNQII 316
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y +I K ++A E+ +M L G P + L ++ + A++++ +
Sbjct: 317 YDALIDGFCKVGKLDEAQEVFTKM-LGHGCSPNVYTYSSLIDKLFKDKRLDLALKVLTKM 375
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
C Y +V+G + + A + ++ M E+G P + +++G G
Sbjct: 376 LENSCAPNVVIYTEMVDGLCKVGKTDEAYRLMLMMEEKGCYPNVVTYTAMIDGFGKAG 433
Score = 40.8 bits (94), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 90/217 (41%), Gaps = 19/217 (8%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
+ GC P L A+L+ R S++ +I M S G P+ T L+ C +
Sbjct: 185 QDGCAPNVVTYTALIHAYLKTRKLSRA-NEIFEMMLSNGCVPNIVTYTALIDGHCKAGET 243
Query: 188 VEAAKVLKGMSSAEC-VPDLE----------------SYSIVIGAMSTARKTNDAVEMMK 230
+A ++ M + + +PD++ +Y ++ + A K +A ++++
Sbjct: 244 EKACQIYARMKNDKVDIPDVDIYFRIVDSELKEPNVVTYGALVDGLCKAHKVKEARDLLE 303
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M L G P Q + + ++ +A E+ + GC Y +++ +
Sbjct: 304 TMSLE-GCEPNQIIYDALIDGFCKVGKLDEAQEVFTKMLGHGCSPNVYTYSSLIDKLFKD 362
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ LA K + M E P + + ++V+GL VG+
Sbjct: 363 KRLDLALKVLTKMLENSCAPNVVIYTEMVDGLCKVGK 399
>gi|224093900|ref|XP_002310039.1| predicted protein [Populus trichocarpa]
gi|222852942|gb|EEE90489.1| predicted protein [Populus trichocarpa]
Length = 507
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 54/107 (50%), Gaps = 6/107 (5%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAID 185
L+ G P Q +L S W +S A++ E MK +G PD T N L+ C
Sbjct: 206 LKKGFRPNLQTFNILLSGW-----KSSEEAELFYEEMKELGVKPDIVTYNSLIDVFCKGR 260
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+L +A V+ M + +PD+ +Y+ +IG + + + A +M+KEM
Sbjct: 261 ELEKAYGVVARMREEDILPDVITYTSIIGGLGLVGQPDKARDMLKEM 307
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 70/164 (42%), Gaps = 9/164 (5%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q D+L EMK G +PD N ++ + C +L A ++ M S P+ SY+
Sbjct: 296 QPDKARDMLKEMKEHGCYPDVAAYNAVIRNYCIAKRLDAAYSLMAEMESKGMSPNATSYN 355
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ S + ++ + M ++ G +P + + + + ++ A+++ +
Sbjct: 356 LFFRVFSWSNDLRNSWDFYGRM-MDAGCLPNTQSCMFLIKLFKRHEKVEMALQLWNDMVE 414
Query: 271 KGCPIGFQGYEVVVEGCL----ECREYILAGKTVMGMTERGFIP 310
K GF Y +V + L + + + A K + M E+G P
Sbjct: 415 K----GFGSYILVSDVLLGMLCDMGKLVEAEKCFLQMVEKGHKP 454
>gi|255660994|gb|ACU25666.1| pentatricopeptide repeat-containing protein [Junellia seriphioides]
Length = 376
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/159 (26%), Positives = 78/159 (49%), Gaps = 9/159 (5%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +A VL GM + C P+ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANFDKAVSVLNGMIKSGCKPNAHVYNTLINGLVAASKFEDAIIVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA--NREMW-KAVEMIEFLERKGCPIGFQGYEVVVEG-CLECRE 292
G M +I + +EM+ +A +++ L KG G Y ++++G CL+ +
Sbjct: 191 GTMHCSPTIITYNTLINGLCKKEMFGEAYNLVKELLDKGLNPGVITYSMLMKGLCLD-HK 249
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 250 VERALQLWNQVTSKGFKPDVRMHNILIHGLCSVGKMQLA 288
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 45/231 (19%), Positives = 92/231 (39%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + G + +++ L + +L M G
Sbjct: 108 GYINKSLHVLEMA------EQKGGVLDAFAYSAMING--LCKEANFDKAVSVLNGMIKSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L++ L A + +A V + M + C P + +Y+ +I + +A
Sbjct: 160 CKPNAHVYNTLINGLVAASKFEDAIIVFREMGTMHCSPTIITYNTLINGLCKKEMFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++KE+ L+ GL P + L + ++ +A+++ + KG + + +++ G
Sbjct: 220 NLVKEL-LDKGLNPGVITYSMLMKGLCLDHKVERALQLWNQVTSKGFKPDVRMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA M P + ++EG G+ + A V+ R
Sbjct: 279 LCSVGKMQLALSLYFDMNRWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|449529622|ref|XP_004171797.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22470,
mitochondrial-like [Cucumis sativus]
Length = 618
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 58/258 (22%), Positives = 108/258 (41%), Gaps = 30/258 (11%)
Query: 91 PLRPR--SRPKIAYDYLLSYTLQSLHPLPL----ALAILQRTLRSGCVPVPQI----RLL 140
P+ P +R +I++ + LS L++ + A +RS P+P I RLL
Sbjct: 41 PILPAAFNREEISFHHPLSLFLRNCKTGNITAIQAFHFFDLMMRSH--PIPPISSFNRLL 98
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
A + Q S+ + EM+ G PD T + L + LC ++++ EA + G+
Sbjct: 99 GGLAKINHYSQLFSLYN---EMRLAGLSPDLFTLSILANCLCNVNRVSEALAAMAGILRR 155
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIK-------VAA 250
+P++ +Y+ +I + + ++A + M +G P G +IK V
Sbjct: 156 GYIPNVVTYTTLIKGLCMEHRISEATRLFLRMQ-KLGCTPNAVTYGTLIKGLCQTGNVNI 214
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
AL+ ++EM C G Y ++++G + A + M +G IP
Sbjct: 215 ALKLHKEMLNDASQYGV----NCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIP 270
Query: 311 YIKVRQKVVEGLAGVGEW 328
+ ++ G G+W
Sbjct: 271 DVISYSTLIHGFCCAGKW 288
Score = 49.3 bits (116), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 53/236 (22%), Positives = 100/236 (42%), Gaps = 21/236 (8%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA + LR G +P V L+ +E R + + L M+ +G P+ T L
Sbjct: 145 ALAAMAGILRRGYIPNVVTYTTLIKGLCMEHRISEAT--RLFLRMQKLGCTPNAVTYGTL 202
Query: 178 VSSLCAIDQLVEAAKVLKGM------SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
+ LC + A K+ K M C P + +YSI+I + + ++A E+ +E
Sbjct: 203 IKGLCQTGNVNIALKLHKEMLNDASQYGVNCKPGVITYSIIIDGLCKVGREDEAKELFEE 262
Query: 232 MVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
M G++P ++ A + ++ EM++ +G + V+++
Sbjct: 263 MKAQ-GMIPDVISYSTLIHGFCCAGKWDQSKHLFDEMVD----QGVQPDMVTFSVLIDTL 317
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
+ + A K + M +RG +P + +++G VG+ A R+ F + S
Sbjct: 318 CKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSA---RELFLSMPS 370
Score = 42.0 bits (97), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 41/206 (19%), Positives = 86/206 (41%), Gaps = 14/206 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV-------ADILLEMKSIG 166
H + A + R + GC P + ++ CQ+ +V ++L + G
Sbjct: 175 HRISEATRLFLRMQKLGCTP----NAVTYGTLIKGLCQTGNVNIALKLHKEMLNDASQYG 230
Query: 167 YHPDCGTCNY--LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+ G Y ++ LC + + EA ++ + M + +PD+ SYS +I A K +
Sbjct: 231 VNCKPGVITYSIIIDGLCKVGREDEAKELFEEMKAQGMIPDVISYSTLIHGFCCAGKWDQ 290
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ + EMV + G+ P + L ++ +A +++E + ++G Y ++
Sbjct: 291 SKHLFDEMV-DQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLI 349
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
+G + A + + M +G P
Sbjct: 350 DGFCMVGDLNSARELFLSMPSKGLEP 375
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 51/113 (45%), Gaps = 7/113 (6%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
QS+ + D EM G PD T + L+ +LC ++ EA K+L+ M VP+L +Y+
Sbjct: 290 QSKHLFD---EMVDQGVQPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYN 346
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
+I N A E+ M + GL P + I + + WK E
Sbjct: 347 SLIDGFCMVGDLNSARELFLSMP-SKGLEPDE---ISYTTLINGYCKTWKVKE 395
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/68 (23%), Positives = 33/68 (48%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD T N ++ C + Q+ A + + M C PD+ +Y+ ++ K +
Sbjct: 512 GLQPDVVTYNIMIHGFCKVGQVDNANILFEKMEENGCTPDIIAYNTLLCGFCEGNKLEEV 571
Query: 226 VEMMKEMV 233
++++ +MV
Sbjct: 572 IKLLHKMV 579
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 50/243 (20%), Positives = 94/243 (38%), Gaps = 39/243 (16%)
Query: 136 QIRLLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q ++ S ++ C+ V A LLE M G P+ T N L+ C + L A +
Sbjct: 304 QPDMVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARE 363
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIK-- 247
+ M S PD SY+ +I K +A+ + EM L +G P G ++K
Sbjct: 364 LFLSMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLYNEM-LQVGKSPNVTTYGTLLKGL 422
Query: 248 --------------------VAA----------ALRANREMWKAVEMIEFLERKGCPIGF 277
V+A L N +++A+E+ L+ +
Sbjct: 423 FQKGKVGDAKKLFGVMKTYGVSANSQIYGIFLDGLCKNDCLFEAMELFNELKSYNFKLNI 482
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ Y +++G + + A + +++ G P + ++ G VG+ A ++ ++
Sbjct: 483 ENYSCLIDGLCKAGKLETAWELFEKLSQEGLQPDVVTYNIMIHGFCKVGQVDNANILFEK 542
Query: 338 FAE 340
E
Sbjct: 543 MEE 545
>gi|302798519|ref|XP_002981019.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
gi|300151073|gb|EFJ17720.1| hypothetical protein SELMODRAFT_114007 [Selaginella moellendorffii]
Length = 448
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 87/210 (41%), Gaps = 5/210 (2%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
VP + + S L C+++ + + +EM GY P T L+ LC + A
Sbjct: 181 VPNVDVYTS--LLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLA 238
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
+ M S VPD +Y+ +I A + +A + KE++ G+ +
Sbjct: 239 YDIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIE 298
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
L ++ +A+E+ + KGC Q Y ++ G + E A + M E+GF P
Sbjct: 299 GLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRAMEEKGFSP 358
Query: 311 YIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++GL VG+ A Q+ E
Sbjct: 359 NTMIYSTFIDGLCKVGKINEAHEFFQQSVE 388
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D G N L+ LC ++ EA +V GM C+P L++Y+ +I A + + A+++
Sbjct: 289 DAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLF 348
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ M G P + L ++ +A E + +GC Y ++ G
Sbjct: 349 RAME-EKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFG 407
Query: 290 CREYILAGKTVMGMTERGFI 309
A + M ERG+I
Sbjct: 408 ANRMDEAHRLYREMGERGYI 427
Score = 44.7 bits (104), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 79/186 (42%), Gaps = 4/186 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGA 215
DI M+S G+ PD T L+ C ++ EA + K + E D Y+++I
Sbjct: 240 DIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEG 299
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A K +A+E+ MV + G +P Q + +AN E+ KA+++ +E KG
Sbjct: 300 LCRASKVEEALEVTAGMV-DKGCIPTLQTYNALIMGFFKAN-EVDKALQLFRAMEEKGFS 357
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++G + + A + ERG +P ++ GL G A +
Sbjct: 358 PNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRL 417
Query: 335 RQRFAE 340
+ E
Sbjct: 418 YREMGE 423
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + GC+P Q L + + + + M+ G+ P+ + +
Sbjct: 309 ALEVTAGMVDKGCIPTLQTYNALIMGFFKAN-EVDKALQLFRAMEEKGFSPNTMIYSTFI 367
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
LC + ++ EA + + CVPD +Y+ +I + A + ++A + +EM
Sbjct: 368 DGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREM 421
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 151 QSQSVADILLEM--KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+++ ++++ EM KS+ PD T L+S LC ++ +A KV M E VP+++
Sbjct: 130 KTREASEVVGEMIKKSV---PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNVDV 186
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVL--------NMGLM-------PRQGMVIKVAAALR 253
Y+ ++ A RK + A + EM+ GL+ R + + +++R
Sbjct: 187 YTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMR 246
Query: 254 --------------------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
A R V E LE + + Y V++EG +
Sbjct: 247 SRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKAQLDAGIYNVLIEGLCRASKV 306
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + GM ++G IP ++ ++ G
Sbjct: 307 EEALEVTAGMVDKGCIPTLQTYNALIMGF 335
>gi|302806555|ref|XP_002985027.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
gi|300147237|gb|EFJ13902.1| hypothetical protein SELMODRAFT_11856 [Selaginella moellendorffii]
Length = 443
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
Query: 119 ALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A ++ Q T +GC + + ++ WL + + Q ++ ++ + G P T N L
Sbjct: 18 AHSLAQETTTNGCTIDIHTYTTIVD--WLAKNKKIQEAVALMEKITANGCTPTIATYNAL 75
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ LC + +L EA +L+ + C PD+ +Y+ +I + +++ +A ++ KEM + G
Sbjct: 76 LNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKRSFEAYKLFKEMA-SRG 134
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L + L ++ +A + + + +GC +++G + A
Sbjct: 135 LALDTVCYTALIRGLLQAGKIPQASSVYKTMTSQGCVPDVVTLSTMIDGLCKAGRIGAAV 194
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGL 322
+ M RG P V ++ GL
Sbjct: 195 RIFKSMEARGLAPNEVVYSALIHGL 219
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/147 (25%), Positives = 65/147 (44%), Gaps = 4/147 (2%)
Query: 143 SAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+++ + ++L +MK PD T N L+ LC + A M
Sbjct: 213 SALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGLCKSGDVAAARAFFDEMLE 272
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
A C PD+ +Y+I+I A T+ A + +M + P + + L R++
Sbjct: 273 AGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSR-CSPNVVTYGTLISGLCKRRQLT 331
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEG 286
KA + ++ +GCP Y +V+G
Sbjct: 332 KASLYYQHMKERGCPPDSFVYSSLVDG 358
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 91/231 (39%), Gaps = 9/231 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y L+ LQ+ +P A ++ + GCVP ++ S ++ C++ +
Sbjct: 140 VCYTALIRGLLQA-GKIPQASSVYKTMTSQGCVP----DVVTLSTMIDGLCKAGRIGAAV 194
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
I M++ G P+ + L+ LC ++ A ++L M A C PD +Y+I+I +
Sbjct: 195 RIFKSMEARGLAPNEVVYSALIHGLCKARKMDCALEMLAQMKKAFCTPDTITYNILIDGL 254
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A EM L G P + + A + + + C
Sbjct: 255 CKSGDVAAARAFFDEM-LEAGCKPDVYTYNILISGFCKAGNTDAACGVFDDMSSSRCSPN 313
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G + R+ A M ERG P V +V+GL G+
Sbjct: 314 VVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKSGK 364
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 73/175 (41%), Gaps = 4/175 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y+ L+ +S + A A L +GC P +L S + + + + +
Sbjct: 245 ITYNILIDGLCKS-GDVAAARAFFDEMLEAGCKPDVYTYNILISGFC-KAGNTDAACGVF 302
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+M S P+ T L+S LC QL +A+ + M C PD YS ++ + +
Sbjct: 303 DDMSSSRCSPNVVTYGTLISGLCKRRQLTKASLYYQHMKERGCPPDSFVYSSLVDGLCKS 362
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K + EM + G+ Q + +ANR + +AV + + ++G P
Sbjct: 363 GKLEGGCMLFDEMERS-GVANSQTRTRLIFHLCKANR-VDEAVSLFNAIRKEGMP 415
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 31/164 (18%), Positives = 71/164 (43%), Gaps = 1/164 (0%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T + L++ L L++A + + ++ C D+ +Y+ ++ ++ +K +AV +M+++
Sbjct: 1 TFSILINGLVKAGMLIQAHSLAQETTTNGCTIDIHTYTTIVDWLAKNKKIQEAVALMEKI 60
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
N G P + L + +A++++ + GC Y +++G + +
Sbjct: 61 TAN-GCTPTIATYNALLNGLCKMGRLEEAIDLLRKIVDNGCTPDVVTYTSLIDGLGKKKR 119
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
A K M RG ++ GL G+ A+ V +
Sbjct: 120 SFEAYKLFKEMASRGLALDTVCYTALIRGLLQAGKIPQASSVYK 163
>gi|224114285|ref|XP_002316718.1| predicted protein [Populus trichocarpa]
gi|222859783|gb|EEE97330.1| predicted protein [Populus trichocarpa]
Length = 684
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 81/171 (47%), Gaps = 3/171 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ +G P+ T N L+ C + ++ +A +++ M C PD SY V+G +
Sbjct: 175 FLERMQLLGIMPNVVTYNCLIKGYCDLHRVEDAMELISEMPLKGCSPDKVSYYTVMGFLC 234
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
R+ + ++++++M + L+ Q + L ++ +A++ + +++G +
Sbjct: 235 KNRRIREVMDVIEKME-DTKLLADQVTYNTLIHMLCKHQHADEALQFLREAQKRGFQVDK 293
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
GY +V+ C E R A + V M RG IP + ++ G + GE
Sbjct: 294 VGYSAIVDSYCKEGR-MDQAKEIVNEMFTRGCIPDVVTYTAIINGFSQAGE 343
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 69/164 (42%), Gaps = 4/164 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ Q + L E + G+ D + +V S C ++ +A +++ M + C+PD+
Sbjct: 269 CKHQHADEALQFLREAQKRGFQVDKVGYSAIVDSYCKEGRMDQAKEIVNEMFTRGCIPDV 328
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ +I S A + A +M+++M + G P L +A EM++
Sbjct: 329 VTYTAIINGFSQAGEVGQARKMLQQMYKH-GCKPNTVSYTAFLKGLCQKGNSSEAREMMK 387
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
E + Y VV+ G + A V M +GF P
Sbjct: 388 ASEEQWWTPNAITYSVVMHGFRREGKLSDACDVVREMIGKGFFP 431
>gi|224136310|ref|XP_002326829.1| predicted protein [Populus trichocarpa]
gi|222835144|gb|EEE73579.1| predicted protein [Populus trichocarpa]
Length = 664
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 47/204 (23%), Positives = 85/204 (41%), Gaps = 11/204 (5%)
Query: 146 LERRCQSQSVADILLEM-KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
L +R ++ + EM + G PD T N L+ C + E + K MS C P
Sbjct: 142 LLKRGRTNMAHSVFDEMCGTYGVTPDTYTFNILIRGFCKNSMVDEGFRFFKEMSRFNCEP 201
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNM-GLMPRQGMVIKVAAALRANREMWKAVE 263
D+ +Y+ ++ + A K A ++K MV M L P + +E+ +A+
Sbjct: 202 DVVTYNTLVDGLCRAGKVRIAHNVVKGMVKKMKDLSPDVVTYTTLVRGYCMKQEIDEALV 261
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREY-----ILAGKTVMGMTERGFIPYIKVRQKV 318
+ E + +G Y +++G E +++ IL G + RGF+P +
Sbjct: 262 VFEEMVSRGLKPNDITYNTLIKGLCEVQKFDKIKEILGG----AVGGRGFVPDTCTYNTL 317
Query: 319 VEGLAGVGEWKLATVVRQRFAELK 342
+ G + A + ++ ELK
Sbjct: 318 MNAQCDAGNFDEALKMFKKMKELK 341
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 11/180 (6%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI------GAMSTA 219
G+ PD T N L+++ C EA K+ K M + PD +YS++I G A
Sbjct: 306 GFVPDTCTYNTLMNAQCDAGNFDEALKMFKKMKELKVQPDSATYSVLIRNLCQRGDFERA 365
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ D + ++ + G P + L N + KA + L +KG
Sbjct: 366 EQLFDKLSDEDILLRDDGCTPLVAAYNPIFDFLCKNGKTHKAERVFRQLMKKGTQDP-PS 424
Query: 280 YEVVVEGCLECREYIL-AG-KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y+ ++ G C+E AG K ++ M R ++P + ++ G GE LA +R
Sbjct: 425 YKTLIIG--HCKEGTFEAGYKLLLFMLRRDYVPDFETYVLLINGFLQKGEPILAYKTLER 482
Score = 42.0 bits (97), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 34/169 (20%), Positives = 72/169 (42%), Gaps = 9/169 (5%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-------CVPDLESYSIVI 213
+MK + PD T + L+ +LC A ++ +S + C P + +Y+ +
Sbjct: 336 KMKELKVQPDSATYSVLIRNLCQRGDFERAEQLFDKLSDEDILLRDDGCTPLVAAYNPIF 395
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
+ KT+ A + ++++ P + + E +++ F+ R+
Sbjct: 396 DFLCKNGKTHKAERVFRQLMKKGTQDPPSYKTLIIGHCKEGTFE--AGYKLLLFMLRRDY 453
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
F+ Y +++ G L+ E ILA KT+ M + ++P V ++ L
Sbjct: 454 VPDFETYVLLINGFLQKGEPILAYKTLERMLKSSYLPKTSVFHSILSEL 502
>gi|356506754|ref|XP_003522141.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At3g15200-like [Glycine max]
Length = 258
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 67/146 (45%), Gaps = 4/146 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD CN ++ +LC ++ EA K+ MS C P++ +Y+ +I M ++
Sbjct: 49 GGKPDVVICNCIIDALCFKKRIPEALKIFCDMSERGCEPNVATYNFLIKYMCNIQRMEKV 108
Query: 226 VEMMKEMVLNMG-LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
E++ EM G +P + L++ +E K ++E +ER GC + Y +V+
Sbjct: 109 YELVDEMERKKGSCLPN---AVTYCYLLKSLKESGKVCRVLERMERNGCGMNGDVYNMVL 165
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
++ + KT M G+ P
Sbjct: 166 SLYMKWDDGDGVRKTWEEMERNGWGP 191
>gi|449513353|ref|XP_004164304.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At3g06920-like [Cucumis sativus]
Length = 904
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S V +L EMK+ G+ P T ++ L ID+L EA + + S ++
Sbjct: 630 CKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNV 689
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + ++A +M+E+ + GL P + AL E+ +A+ +
Sbjct: 690 VIYSSLIDGFGKVGRIDEAYLIMEEL-MQKGLTPNVYTWNCLLDALVKAEEISEALVCFQ 748
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ C + Y +++ G + R++ A M ++GF P + ++ GLA G
Sbjct: 749 SMKDLKCTPNYITYSILIHGLCKIRKFNKAFVFWQEMQKQGFKPNVFTYTTMISGLAKAG 808
Query: 327 EWKLATVVRQRFAE 340
A + ++F E
Sbjct: 809 NIVEADTLFEKFKE 822
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 56/129 (43%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ E+ G P+ T N L+ +L +++ EA + M +C P+ +YSI+I +
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLKCTPNYITYSILIHGLC 770
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK N A +EM G P + + L + +A + E + KG
Sbjct: 771 KIRKFNKAFVFWQEMQ-KQGFKPNVFTYTTMISGLAKAGNIVEADTLFEKFKEKGGVADS 829
Query: 278 QGYEVVVEG 286
Y ++EG
Sbjct: 830 AIYNAIIEG 838
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 91/224 (40%), Gaps = 8/224 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
I LR GC P LLL + +++ + + + + E+K++G+ PD + L+
Sbjct: 536 IYNEMLRLGCSP----DLLLLNTYMDCVFKAGEIEKGRALFQEIKNLGFIPDARSYTILI 591
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L EA ++ M CV D +Y+ VI + K N A ++++EM G
Sbjct: 592 HGLVKAGFAHEAYELFYTMKEQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMKTK-GH 650
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L + +A + E + KG + Y +++G + A
Sbjct: 651 EPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKGIELNVVIYSSLIDGFGKVGRIDEAYL 710
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + ++G P + +++ L E A V Q +LK
Sbjct: 711 IMEELMQKGLTPNVYTWNCLLDALVKAEEISEALVCFQSMKDLK 754
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/190 (21%), Positives = 78/190 (41%), Gaps = 42/190 (22%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY---LLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
++E +E F + + AY Y ++ Y + A ++L+R R GC+P V
Sbjct: 321 LNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAG--KFEDAYSLLERQRRKGCIPSVVSY 378
Query: 138 RLLLSSAWLERRCQ-----------------SQSVADILLE-----------------MK 163
+LS L R+ Q + S +I+++ MK
Sbjct: 379 NCILSC--LGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMK 436
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
G P+ T N +V LC +L +A + +G+ C PD +Y +I + + +
Sbjct: 437 DAGLFPNVITVNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVD 496
Query: 224 DAVEMMKEMV 233
+A ++ ++M+
Sbjct: 497 EAYKLYEQML 506
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 56/300 (18%), Positives = 117/300 (39%), Gaps = 46/300 (15%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLL 141
+DE L+ F ++ + P ++ ++ L L AL + +G P ++
Sbjct: 391 VDEALKKFEEMKKDAIPNLSTYNIMIDMLCKAGKLETALVVRDAMKDAGLFP----NVIT 446
Query: 142 SSAWLERRCQSQSVADILLEMKSIGY---HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ ++R C++Q + D + + + PD T L+ L ++ EA K+ + M
Sbjct: 447 VNIMVDRLCKAQRLDDACSIFEGLDHKTCRPDAVTYCSLIEGLGRHGRVDEAYKLYEQML 506
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM-------------------------- 232
A +P+ Y+ +I + D ++ EM
Sbjct: 507 DANQIPNAVVYTSLIRNFFKCGRKEDGHKIYNEMLRLGCSPDLLLLNTYMDCVFKAGEIE 566
Query: 233 --------VLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+ N+G +P + I + ++A +A E+ ++ +GC + + Y V
Sbjct: 567 KGRALFQEIKNLGFIPDARSYTILIHGLVKAGFAH-EAYELFYTMKEQGCVLDTRAYNTV 625
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
++G + + A + + M +G P + V++GLA + A ++ F E KS
Sbjct: 626 IDGFCKSGKVNKAYQLLEEMKTKGHEPTVVTYGSVIDGLAKIDRLDEAYML---FEEAKS 682
Score = 40.0 bits (92), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G+ P TC +V S +L EA ++ M + P +Y+ +IGA+S
Sbjct: 152 ILEEMSIAGFGPSNNTCIEIVLSFIKSRKLREAFTFIQTMRKLKFRPAFSAYTNLIGALS 211
Query: 218 TARKTNDAVEMMKEM 232
T+R ++ + + ++M
Sbjct: 212 TSRDSDCMLTLFQQM 226
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 76/192 (39%), Gaps = 8/192 (4%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + +L EMKS PD N + ++ A K M + V D
Sbjct: 247 REGRVDAALSLLDEMKSNSLEPDVVLYNVCIDCFGKAGKVDMAWKXFHEMKANGLVLDDV 306
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGL---MPRQGMVIKVAAALRANREMWKAVEM 264
+Y+ +IG + A + N+AVE+ + M N + M++ A + A +
Sbjct: 307 TYTSMIGVLCKADRLNEAVELFEHMDQNKQVPCAYAYNTMIMGYGMAGK----FEDAYSL 362
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E RKGC Y ++ CL + + ++ IP + +++ L
Sbjct: 363 LERQRRKGCIPSVVSYNCIL-SCLGRKGQVDEALKKFEEMKKDAIPNLSTYNIMIDMLCK 421
Query: 325 VGEWKLATVVRQ 336
G+ + A VVR
Sbjct: 422 AGKLETALVVRD 433
>gi|414874052|tpg|DAA52609.1| TPA: hypothetical protein ZEAMMB73_367214 [Zea mays]
Length = 716
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 11/232 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ L+ C+++ DILL +G P
Sbjct: 129 HRPELALAFFGQLLRTGL----RVDIIIANHLLKGFCEAKRTDEALDILLHRTPELGCVP 184
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C PD+ +Y+ VI N A +
Sbjct: 185 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPDVVAYTTVIDCFFKEGDVNKACD 244
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV G+ P V AL R M KA + + KG Y ++ G
Sbjct: 245 LFKEMV-QRGIPPDLVTYSSVVHALCKARAMGKAEAFLRQMVNKGVLPDNWTYNNLIYGY 303
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
++ A + M +P + ++ L G+ K A V A
Sbjct: 304 SSTGQWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMA 355
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 34/147 (23%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD + L+ C + ++ +A +V M SA P+
Sbjct: 516 LGRIMDAQNIFDLTV---NVGQHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 572
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + A R + V+
Sbjct: 573 VVVYGTLVNGYCKIGRIDEGLSLFREM-LQKGIKPSTILYNIIIDGLFVAGRTVPAKVKF 631
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G I Y +V+ G + R
Sbjct: 632 HEMTE-SGIAINKCTYNIVLRGFFKNR 657
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 42/90 (46%), Gaps = 1/90 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + + EM+ PD T N L+ SLC ++ EA V M+ PD+ SY
Sbjct: 308 QWKEAVRVFKEMRRHSILPDVVTLNMLMGSLCKYGKIKEARDVFDTMAMKGQNPDVFSYK 367
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
I++ +T D ++ +++L G+ P
Sbjct: 368 IMLNGYATKGCLVDMTDLF-DLMLGDGIAP 396
>gi|12323427|gb|AAG51690.1|AC016972_9 hypothetical protein; 66200-63606 [Arabidopsis thaliana]
Length = 864
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
IG+ P + NYL+ +LCA + + +A VLKG +++S + A+ K
Sbjct: 406 IGFAPTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKP-- 463
Query: 225 AVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+M +E+V+ L+P++ K+ +AL ++ A+ + E + G F+ +
Sbjct: 464 --DMARELVIAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFT 521
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G + +A K ++ M E+G+ P + + V++
Sbjct: 522 SLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYRNVIQ 560
>gi|356505993|ref|XP_003521773.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 570
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 62/127 (48%), Gaps = 6/127 (4%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL+I ++ GC P + S+ W ++LEM G PD T N L
Sbjct: 390 ALSIFEKLGEVGCSPNASSYNSMFSALW--STGHKVRALGMILEMLDKGVDPDGITYNSL 447
Query: 178 VSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+S LC + EA ++L M S+EC P + SY+IV+ + + +DA+E++ MV +
Sbjct: 448 ISCLCRDGMVDEAIELLVDMEMESSECKPSVVSYNIVLLGLCKVSRVSDAIEVLAAMV-D 506
Query: 236 MGLMPRQ 242
G P +
Sbjct: 507 KGCRPNE 513
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 61/281 (21%), Positives = 122/281 (43%), Gaps = 27/281 (9%)
Query: 65 NPFSFLSNFPQNHR-IKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLH------PL 116
NP +N N R + +++E L S+P+ D+ ++ L+SL
Sbjct: 14 NPHPNRTNSHSNSRTLPILNETTNINRTLSSVSKPQTHTLDFKDTHLLKSLSRSCKAGNF 73
Query: 117 PLALAILQRTLRSGCVP-----VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171
+L L+ + G P I L +S +++ Q + +++ G HPD
Sbjct: 74 NESLYFLRHLVNKGHKPDVVLCTKLIHGLFTSKTIDKAIQVMHI------LENHG-HPDL 126
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
N +++ C +++ A +VL M + PD+ +Y+I+IG++ + + A+E K
Sbjct: 127 IAYNAIITGFCRANRIDSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALE-FKN 185
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLEC 290
+L P + A + +A++++ E LE P F Y ++ G C
Sbjct: 186 QLLKENCKPTVVTYTILIEATLLQGGIDEAMKLLDEMLEINLQPDMFT-YNSIIRGM--C 242
Query: 291 REYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
RE + A + + ++ +G+ P + ++ GL G+W+
Sbjct: 243 REGYVDRAFQIISSISSKGYAPDVITYNILLRGLLNQGKWE 283
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 1/155 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
S +L MK+ G+ PD T N L+ SLC+ L A + + C P + +Y+I+
Sbjct: 143 DSAYQVLDRMKNKGFSPDIVTYNILIGSLCSRGMLDSALEFKNQLLKENCKPTVVTYTIL 202
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A ++A++++ EM L + L P + + + +A ++I + KG
Sbjct: 203 IEATLLQGGIDEAMKLLDEM-LEINLQPDMFTYNSIIRGMCREGYVDRAFQIISSISSKG 261
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
Y +++ G L ++ + + M RG
Sbjct: 262 YAPDVITYNILLRGLLNQGKWEAGYELMSDMVARG 296
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +MK G PD + L+++LC ++ A +VL M S CVPD+ +Y+ ++ +
Sbjct: 323 LLKDMKKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISDGCVPDIVNYNTILACLC 382
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIG 276
++ ++A+ + E + +G P + +AL + +A+ MI E L++ P G
Sbjct: 383 KQKRADEALSIF-EKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDPDG 441
Query: 277 FQGYEVVVEGCLECRE 292
Y ++ CL CR+
Sbjct: 442 IT-YNSLIS-CL-CRD 454
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 37/156 (23%), Positives = 71/156 (45%), Gaps = 9/156 (5%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
IR + +++R Q I+ + S GY PD T N L+ L + +++
Sbjct: 238 IRGMCREGYVDRAFQ------IISSISSKGYAPDVITYNILLRGLLNQGKWEAGYELMSD 291
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + C ++ +YS++I ++ K + V ++K+M GL P + AAL
Sbjct: 292 MVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDMK-KKGLKPDGYCYDPLIAALCKEG 350
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
+ A+E+++ + GC Y ++ CL C++
Sbjct: 351 RVDLAIEVLDVMISDGCVPDIVNYNTIL-ACL-CKQ 384
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 51/233 (21%), Positives = 100/233 (42%), Gaps = 10/233 (4%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
+K++DEMLE I L+P Y+ ++ + + + A I+ G P V
Sbjct: 216 MKLLDEMLE--INLQP---DMFTYNSIIRGMCREGY-VDRAFQIISSISSKGYAPDVITY 269
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+LL L + + ++ +++ +M + G + T + L+SS+C ++ E +LK M
Sbjct: 270 NILLRG--LLNQGKWEAGYELMSDMVARGCEANVVTYSVLISSVCRDGKVEEGVGLLKDM 327
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
PD Y +I A+ + + A+E++ M+ + G +P + A L +
Sbjct: 328 KKKGLKPDGYCYDPLIAALCKEGRVDLAIEVLDVMISD-GCVPDIVNYNTILACLCKQKR 386
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A+ + E L GC Y + + A ++ M ++G P
Sbjct: 387 ADEALSIFEKLGEVGCSPNASSYNSMFSALWSTGHKVRALGMILEMLDKGVDP 439
>gi|356495741|ref|XP_003516732.1| PREDICTED: pentatricopeptide repeat-containing protein At1g52640,
mitochondrial-like [Glycine max]
Length = 523
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/207 (21%), Positives = 88/207 (42%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A + Q L GC PV LL + L+ C+ V +I +M S PD T +
Sbjct: 235 ACDLFQAMLEQGC-PVD---LLAYNNLLQALCKGGRVDEAKNIFHDMLSKRVEPDAFTYS 290
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ S C D + A +VL M +P++ +Y+ +I + +A +++ EM+ +
Sbjct: 291 IFIHSYCDADDVQSAFRVLDKMRRYNLLPNVFTYNCIIKQLCKNEHVEEAYQLLDEMI-S 349
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + A + E+ +A+ ++ +E+ C Y +V++ + +
Sbjct: 350 RGVKPDTWSYNAIQAYHCDHCEVNRALRLMFRMEKDICLPDRHTYNMVLKLLIRIGRFDK 409
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ M ++ F P + ++ G
Sbjct: 410 VTEVWENMVDKKFYPSVSTYSVMIHGF 436
>gi|22135795|gb|AAM91084.1| AT4g28010/T13J8_120 [Arabidopsis thaliana]
Length = 704
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 90/216 (41%), Gaps = 6/216 (2%)
Query: 118 LALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
A +L L+ G V +LL L R + +L EM+ PD + N
Sbjct: 125 FAFGVLALMLKRGFAFNVYNHNILLKG--LCRNLECGKAVSLLREMRRNSLMPDVFSYNT 182
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ C +L +A ++ M + C L ++ I+I A A K ++A+ +KEM M
Sbjct: 183 VIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAFCKAGKMDEAMGFLKEMKF-M 241
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL + + E+ + + E LER P Y ++ G + +
Sbjct: 242 GLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPCAIT-YNTLIRGFCKLGQLKE 300
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + M ERG P + +++GL GVG+ K A
Sbjct: 301 ASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSA 200
+ + C+ VAD I+ MK PD T N L+ LCA L EA+K+L M S+
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSS 418
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---- 256
PD+ SY+ +I + + + A+++ +V +G R I + + L+A
Sbjct: 419 YTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKA 478
Query: 257 -EMWKAV 262
E+WK +
Sbjct: 479 MELWKQI 485
>gi|125538899|gb|EAY85294.1| hypothetical protein OsI_06665 [Oryza sativa Indica Group]
Length = 632
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/211 (21%), Positives = 85/211 (40%), Gaps = 1/211 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L L + + S C+P + A E + + V MK G P T +
Sbjct: 351 LDDGLKLFEEMGVSHCIPNVVTYNTIIKALFESKSRVSEVFSWFERMKGSGISPSPFTYS 410
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C +++ +A +L+ M P +Y +I A+ A++ + A E+ +E+ N
Sbjct: 411 ILIDGFCKTNRIEKAMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKEN 470
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G + + + +A R + A+ + + + + GC Y ++ G
Sbjct: 471 CGSSSARVYAVMIKHLGKAGR-LDDAINLFDEMSKLGCTPNVYAYNALMSGLARACMLDE 529
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A T+ M E G +P I ++ GLA G
Sbjct: 530 ALTTMRKMQEHGCLPDINSYNIILNGLAKTG 560
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 34/118 (28%), Positives = 54/118 (45%), Gaps = 3/118 (2%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L A+ + + GC P V L+S L R C + +M+ G PD +
Sbjct: 492 LDDAINLFDEMSKLGCTPNVYAYNALMSG--LARACMLDEALTTMRKMQEHGCLPDINSY 549
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N +++ L A ++L M ++ PD SY+ V+ A+S A +A E+MKEM
Sbjct: 550 NIILNGLAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAAELMKEM 607
Score = 41.2 bits (95), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 59/263 (22%), Positives = 120/263 (45%), Gaps = 25/263 (9%)
Query: 47 YQQIPELLG--SFEEACQNPNPFSF---LSNF----PQNHRIKVIDEMLESFIPLRPRSR 97
Y+++ EL S E CQ P+ ++ +S F Q+ I++++EM E+ ++P ++
Sbjct: 210 YEKVHELYNEMSNEGHCQ-PDTVTYSALISAFCKLGRQDSAIRLLNEMKEN--GMQPTAK 266
Query: 98 PKIAYDYLLS--YTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQS 154
Y ++S + L ++H AL++ + C P V L+ L + +
Sbjct: 267 ---IYTMIISLFFKLDNVHG---ALSLFEEMRYMYCRPDVFTYTELIRG--LGKAGRIDE 318
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
EM+ G PD N +++ L +L + K+ + M + C+P++ +Y+ +I
Sbjct: 319 AYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVSHCIPNVVTYNTIIK 378
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ ++ V E + G+ P I + + NR + KA+ ++E ++ KG
Sbjct: 379 ALFESKSRVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNR-IEKAMMLLEEMDEKGF 437
Query: 274 PIGFQGYEVVVEGCLECREYILA 296
P Y +++ + + Y LA
Sbjct: 438 PPCPAAYCSLIDALGKAKRYDLA 460
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 86/205 (41%), Gaps = 18/205 (8%)
Query: 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
F PC + SL + A AK Y EL +E C + + +
Sbjct: 437 FPPCPAAYCSL------------IDALGKAKRYDLACELFQELKENCGSSSARVYAVMIK 484
Query: 75 QNHRIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+ +D+ + F + P + AY+ L+S L L AL +++ GC+
Sbjct: 485 HLGKAGRLDDAINLFDEMSKLGCTPNVYAYNALMS-GLARACMLDEALTTMRKMQEHGCL 543
Query: 133 P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P + ++L+ L + ++L MK+ PD + N ++S+L EAA
Sbjct: 544 PDINSYNIILNG--LAKTGGPHRAMEMLTNMKNSTIKPDAVSYNTVLSALSHAGMFEEAA 601
Query: 192 KVLKGMSSAECVPDLESYSIVIGAM 216
+++K M++ DL +YS ++ A+
Sbjct: 602 ELMKEMNALGFEYDLITYSSILEAI 626
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 7/225 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +G P +I ++ S + + + EM+ + PD T L+
Sbjct: 249 AIRLLNEMKENGMQPTAKIYTMIISLFFKLD-NVHGALSLFEEMRYMYCRPDVFTYTELI 307
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA M C PD + +I + A + +D +++ +EM ++
Sbjct: 308 RGLGKAGRIDEAYHFYHEMQREGCKPDTVVMNNMINFLGKAGRLDDGLKLFEEMGVS-HC 366
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQ--GYEVVVEGCLECREYIL 295
+P + AL ++ + E+ + ER KG I Y ++++G +
Sbjct: 367 IPNVVTYNTIIKALFESKS--RVSEVFSWFERMKGSGISPSPFTYSILIDGFCKTNRIEK 424
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E+GF P +++ L + LA + Q E
Sbjct: 425 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLACELFQELKE 469
>gi|297740763|emb|CBI30945.3| unnamed protein product [Vitis vinifera]
Length = 796
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ + P+ T N L+ C + +L +A +++ M C PD SY V+G +
Sbjct: 289 FLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLC 348
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + +M++M+ + L+P Q L + +A+E + E + +
Sbjct: 349 KEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 408
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
GY +V CRE + A + V M +G IP + V+ GL
Sbjct: 409 VGYSAIVHSF--CREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGL 453
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/234 (20%), Positives = 99/234 (42%), Gaps = 3/234 (1%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
HR++ E++ +P + S KI+Y ++ + + + L ++++ L+ + Q
Sbjct: 316 HRLEDAMELIAE-MPFKGCSPDKISYYTVMGFLCKEKRIKEVRL-LMEKMLKDSNLLPDQ 373
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ L + + L E + + D + +V S C ++ +A +++
Sbjct: 374 VTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHSFCREGRMDKAKEIVNE 433
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S C+PD+ +Y+ VI + RK + A +M+++M + G P + L N
Sbjct: 434 MFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKH-GCKPNTVSYTALLNGLCKNG 492
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+A EM+ E Y V++ G + A V M ++GF P
Sbjct: 493 NSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLVREMIKKGFFP 546
>gi|413936859|gb|AFW71410.1| hypothetical protein ZEAMMB73_528560 [Zea mays]
Length = 671
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 61/249 (24%), Positives = 111/249 (44%), Gaps = 21/249 (8%)
Query: 44 AKDYQQIPELLGSFEEACQNPNPFSFLSN---FPQNHRIKVIDEMLESFIPLRPRSRPKI 100
AK ++Q EL+ +PN +F + F QN + E+LE +P + I
Sbjct: 229 AKQWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQ-MPKYGCTPDVI 287
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTL---RSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
Y L++ + AL +L L + C L ++ W E V +
Sbjct: 288 IYSTLVN-GFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGRWEE-------VGE 339
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE-AAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM P+ T + L++SLC ++LVE A +VL+ M +PD+ SY+ +I
Sbjct: 340 LIAEMVRKDCPPNDATFSTLINSLCQ-NRLVEYAVEVLEQMQKYGYMPDVVSYNTIISCF 398
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S + +DA++++K M+ P V L + + AVE++ + +K C I
Sbjct: 399 SDQARADDALKLLKSMLCK----PDTISFNAVLKCLCKAKRWYDAVELVAKMLKKDCRIN 454
Query: 277 FQGYEVVVE 285
+ ++++
Sbjct: 455 EMTFNILID 463
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/163 (20%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + +++ EM HP+ T + + C L A ++L+ M C PD+ YS
Sbjct: 231 QWEQAEELMREMIRNSCHPNEVTFATQIRAFCQNGLLDRAVELLEQMPKYGCTPDVIIYS 290
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLE 269
++ S + ++A++++ M+ + + + A R W+ V E+I +
Sbjct: 291 TLVNGFSEHGRVDEALKLLNTMLCRPNTVCYNAALKGLCIAGR-----WEEVGELIAEMV 345
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
RK CP + ++ + R A + + M + G++P +
Sbjct: 346 RKDCPPNDATFSTLINSLCQNRLVEYAVEVLEQMQKYGYMPDV 388
>gi|30698782|ref|NP_177277.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75151609|sp|Q8GZA6.1|PP113_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g71210
gi|26449321|dbj|BAC41788.1| unknown protein [Arabidopsis thaliana]
gi|29029058|gb|AAO64908.1| At1g71210 [Arabidopsis thaliana]
gi|332197052|gb|AEE35173.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 879
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
IG+ P + NYL+ +LCA + + +A VLKG +++S + A+ K
Sbjct: 421 IGFAPTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKP-- 478
Query: 225 AVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+M +E+V+ L+P++ K+ +AL ++ A+ + E + G F+ +
Sbjct: 479 --DMARELVIAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFT 536
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G + +A K ++ M E+G+ P + + V++
Sbjct: 537 SLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYRNVIQ 575
>gi|359494794|ref|XP_002267896.2| PREDICTED: pentatricopeptide repeat-containing protein At3g07290,
mitochondrial [Vitis vinifera]
Length = 876
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T L+ + C I +A K+L M++ CVP++ +Y+I+I +
Sbjct: 267 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 326
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW--KAVEMIEFLERKGCPIGFQ 278
K +A + ++M L GL P G++ A +E W A +++ +E+ C +
Sbjct: 327 KIEEANGVFRKM-LKHGLCP--GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIR 383
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++EG + A + + + G +P +V+G G+ +A
Sbjct: 384 TYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMA 436
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTN 223
+G+ D C LV + C D L EA +V + MS E C P+ +YSI+I + A +
Sbjct: 200 LGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEENCRPNSVTYSILIHGLCEAGRLE 259
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+A ++ +EMV G P + A KA++M++ + K C Y ++
Sbjct: 260 EAFQLKQEMV-EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 318
Query: 284 VEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ CRE + A M + G P I ++ G G W
Sbjct: 319 IDRL--CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEG-W 362
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
+ L A A+L + ++ G VP ++ + +E C++ A +L MK G P+
Sbjct: 536 YKLNEANAMLGKMMKYGLVP----SVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 591
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T +++ LC ++ EA +L MSS P+ +Y++++ A A + + A +++
Sbjct: 592 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 651
Query: 231 EMVLNMGLMPR 241
MV N G P
Sbjct: 652 TMVKN-GCQPN 661
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 2/216 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L+R + +G +P +L + + Q +I M S G PD T L+
Sbjct: 401 AFLLLRRVVDNGLLPDRVTYNILVDGFC-KEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 459
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + +L +A +L M D +++ +I K D + + MV N L
Sbjct: 460 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 519
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
AL + ++ +A M+ + + G + +++EG E L+ K
Sbjct: 520 TTAHTFNC-FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 578
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M + G P + ++ GL G + A +
Sbjct: 579 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 614
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T + L+ LC +L EA ++ + M C P +Y+++I A T+ A++M
Sbjct: 240 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 299
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM + I + R + + L+ CP G + ++ G
Sbjct: 300 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP-GIITFNALING-- 356
Query: 289 ECRE-YILAGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
C+E ++++ ++ + E+G P I+ +++EGL V + A ++ +R +
Sbjct: 357 YCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 410
>gi|115450929|ref|NP_001049065.1| Os03g0165100 [Oryza sativa Japonica Group]
gi|113547536|dbj|BAF10979.1| Os03g0165100 [Oryza sativa Japonica Group]
Length = 695
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 48/206 (23%), Positives = 87/206 (42%), Gaps = 8/206 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A+A++ + G P ++ ++ L+ C+S ++ EM G PD +
Sbjct: 149 AMALVDSMVSKGLKP----GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 204
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + ++ EA K+ K M PDL S+S +IG + K + A+ ++EM
Sbjct: 205 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC- 263
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P + V M A+ + + + GC Y ++ G + R +
Sbjct: 264 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 323
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEG 321
A + M ERG P + ++ G
Sbjct: 324 AEGLLNEMRERGVPPDLCTFTTLIHG 349
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 9/254 (3%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
R+ I+E L+ + +R R +P + L + A+A L+ G VP
Sbjct: 212 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 271
Query: 137 IRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
I ++ + C++ ++D L EM G PD T N L++ LC +L++A +
Sbjct: 272 IYTMVIGGF----CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 327
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L M PDL +++ +I K + A+++ M LN L P + +
Sbjct: 328 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTYNTLIDGMC 386
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
++ KA ++ + + + Y ++++ E + A + M +G +P I
Sbjct: 387 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 446
Query: 314 VRQKVVEGLAGVGE 327
+++G G
Sbjct: 447 TYNSIIKGYCRSGN 460
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R +++ ++ M S G P T N ++ LC +A +V K M PD+
Sbjct: 142 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 201
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLN------------MGLMPRQGMVIKVAAALRAN 255
S++I+IG + +A+++ KEM +GL R+G + A LR
Sbjct: 202 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 261
Query: 256 R 256
R
Sbjct: 262 R 262
>gi|20219038|gb|AAM15782.1|AC104428_3 Putative indole-3-acetate beta-glucosyltransferase [Oryza sativa
Japonica Group]
gi|108706351|gb|ABF94146.1| Rf1 protein, mitochondrial precursor, putative [Oryza sativa
Japonica Group]
gi|125585039|gb|EAZ25703.1| hypothetical protein OsJ_09536 [Oryza sativa Japonica Group]
Length = 648
Score = 52.4 bits (124), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 95/228 (41%), Gaps = 13/228 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A+A++ + G P ++ ++ L+ C+S ++ EM G PD +
Sbjct: 210 AMALVDSMVSKGLKP----GIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVRSFT 265
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + ++ EA K+ K M PDL S+S +IG + K + A+ ++EM
Sbjct: 266 ILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRC- 324
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL+P + V M A+ + + + GC Y ++ G + R +
Sbjct: 325 FGLVPDGVIYTMVIGGFCRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLD 384
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-----TVVRQRF 338
A + M ERG P + ++ G G+ A T++ QR
Sbjct: 385 AEGLLNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTMLNQRL 432
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 105/254 (41%), Gaps = 9/254 (3%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
R+ I+E L+ + +R R +P + L + A+A L+ G VP
Sbjct: 273 RVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREMRCFGLVPDGV 332
Query: 137 IRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
I ++ + C++ ++D L EM G PD T N L++ LC +L++A +
Sbjct: 333 IYTMVIGGF----CRAGLMSDALRVRDEMVGCGCLPDVVTYNTLLNGLCKERRLLDAEGL 388
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L M PDL +++ +I K + A+++ M LN L P + +
Sbjct: 389 LNEMRERGVPPDLCTFTTLIHGYCIEGKLDKALQLFDTM-LNQRLRPDIVTYNTLIDGMC 447
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
++ KA ++ + + + Y ++++ E + A + M +G +P I
Sbjct: 448 RQGDLDKANDLWDDMHSREIFPNHVTYSILIDSHCEKGQVEDAFGFLDEMINKGILPNIM 507
Query: 314 VRQKVVEGLAGVGE 327
+++G G
Sbjct: 508 TYNSIIKGYCRSGN 521
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 12/121 (9%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R +++ ++ M S G P T N ++ LC +A +V K M PD+
Sbjct: 203 RAGDAEAAMALVDSMVSKGLKPGIVTYNSVLKGLCRSGMWDKAWEVFKEMDDFGVAPDVR 262
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLN------------MGLMPRQGMVIKVAAALRAN 255
S++I+IG + +A+++ KEM +GL R+G + A LR
Sbjct: 263 SFTILIGGFCRVGEIEEALKIYKEMRHRGIKPDLVSFSCLIGLFARRGKMDHAMAYLREM 322
Query: 256 R 256
R
Sbjct: 323 R 323
>gi|356574874|ref|XP_003555568.1| PREDICTED: pentatricopeptide repeat-containing protein At3g04760,
chloroplastic-like [Glycine max]
Length = 576
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/83 (36%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++L MK G+ PD T N L+ SLCA +L A KV+ + C P + +Y+I+I A
Sbjct: 168 VILRMKYRGFSPDVVTYNILIGSLCARGKLDLALKVMDQLLEDNCNPTVITYTILIEATI 227
Query: 218 TARKTNDAVEMMKEMVLNMGLMP 240
+DA+ ++ EM ++ GL P
Sbjct: 228 IHGSIDDAMRLLDEM-MSRGLQP 249
Score = 52.0 bits (123), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 79/169 (46%), Gaps = 2/169 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G+ PD N ++ SLC + EA + K + C P+ SY+ + GA+ ++
Sbjct: 378 DMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNASSYNTMFGALWSSG 437
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
A+ M+ EM+ N G+ P + + ++L + + +A+ ++ +ER Y
Sbjct: 438 DKIRALTMILEMLSN-GVDPDRITYNSLISSLCRDGMVDEAIGLLVDMERTEWQPTVISY 496
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+V+ G + + A + + M + G P +VEG+ G W+
Sbjct: 497 NIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVGYAG-WR 544
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 58/125 (46%), Gaps = 4/125 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I ++ GC P + + W ++LEM S G PD T N L
Sbjct: 407 ALNIFKKLEEVGCPPNASSYNTMFGALW--SSGDKIRALTMILEMLSNGVDPDRITYNSL 464
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+SSLC + EA +L M E P + SY+IV+ + A + DA+E++ MV N G
Sbjct: 465 ISSLCRDGMVDEAIGLLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDN-G 523
Query: 238 LMPRQ 242
P +
Sbjct: 524 CQPNE 528
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 4/137 (2%)
Query: 130 GCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
GC P + +L+SS L R ++ D+L MK G +PD + L+S+ C ++
Sbjct: 313 GCEPNIVTYSVLISS--LCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFCKEGKVD 370
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
A + M SA +PD+ +Y+ ++G++ + ++A+ + K++ +G P +
Sbjct: 371 LAIGFVDDMISAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLE-EVGCPPNASSYNTM 429
Query: 249 AAALRANREMWKAVEMI 265
AL ++ + +A+ MI
Sbjct: 430 FGALWSSGDKIRALTMI 446
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M G P+ T + L+SSLC + EA VL+ M PD Y +I A
Sbjct: 305 LMSDMIVKGCEPNIVTYSVLISSLCRDGKAGEAVDVLRVMKEKGLNPDAYCYDPLISAFC 364
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + A+ + +M+ + G +P + +L +A+ + + LE GCP
Sbjct: 365 KEGKVDLAIGFVDDMI-SAGWLPDIVNYNTIMGSLCKKGRADEALNIFKKLEEVGCPPNA 423
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y + + I A ++ M G P
Sbjct: 424 SSYNTMFGALWSSGDKIRALTMILEMLSNGVDP 456
Score = 37.4 bits (85), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 20/76 (26%), Positives = 42/76 (55%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L++M+ + P + N ++ LC ++V+A +VL M C P+ +Y++++ +
Sbjct: 480 LLVDMERTEWQPTVISYNIVLLGLCKAHRIVDAIEVLAVMVDNGCQPNETTYTLLVEGVG 539
Query: 218 TARKTNDAVEMMKEMV 233
A + AVE+ K +V
Sbjct: 540 YAGWRSYAVELAKSLV 555
>gi|116309556|emb|CAH66618.1| OSIGBa0144C23.4 [Oryza sativa Indica Group]
Length = 845
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR P + Y +L + +H L LAI+ R L++G P L+ + +
Sbjct: 169 PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYG--FVKDGEV 226
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ LEM G P CN ++ LC + ++ +A +++ M + PDL +YS++
Sbjct: 227 DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLI 286
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
I + ++ + A ++++MV
Sbjct: 287 IDGLCKSKAMDKAERVLEQMV 307
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
+P P ++ S+ + C+ VA DI+ M G P+ T N L+ C + +
Sbjct: 524 IPPPGVKYF--SSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 581
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L M+S P+ Y ++ + +DA+ + ++M L+ G+ P + +
Sbjct: 582 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM-LHKGVKPTSVLYSII 640
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L R A +M + G + Y VV+ G CR
Sbjct: 641 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGL--CRN 682
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 41/188 (21%), Positives = 85/188 (45%), Gaps = 6/188 (3%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I M + G P+ N L+++ + +A + + M + +PD +++ VI ++
Sbjct: 409 NIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVISSL 468
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPI 275
+ +DA+ MV ++G+ P + + + + E+ KA E+I E + + P
Sbjct: 469 CRIGRLDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDIPPP 527
Query: 276 GFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333
G + + ++ C E R + GK +M M + G P + ++EG VG + A
Sbjct: 528 GVKYFSSIINNLCKEGR--VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEEAFA 585
Query: 334 VRQRFAEL 341
+ A +
Sbjct: 586 LLDAMASI 593
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +I+Q+ + SG P L S ++ C+S+++ +L +M G P+ T N
Sbjct: 264 AESIVQKMVDSGIAP----DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYN 319
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ E+ +V K MSS +P +++ + I A+ +TN+A + MVL
Sbjct: 320 SLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVL 378
>gi|147787958|emb|CAN73849.1| hypothetical protein VITISV_021776 [Vitis vinifera]
Length = 671
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/240 (22%), Positives = 99/240 (41%), Gaps = 8/240 (3%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVA 156
P I ++L + L+ + A ++L + L+ G P L+ +E +
Sbjct: 94 PNIYTLHILINSFCHLNRVGFAFSVLAKILKLGHQPDTATFTTLIRGICVEGKIGE--AL 151
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ +M G+ PD T L++ LC + A ++L M C P++ +Y+ +I ++
Sbjct: 152 HLFDKMIGEGFRPDVVTYGTLINGLCKVGNTSAAIRLLGSMVQKNCQPNVFAYNTIIDSL 211
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKGCP 274
R+ +A + EMV G+ P + AL N WK V + E ++ K P
Sbjct: 212 CKDRQVTEAFNLFSEMVTK-GISPDIFTYNSLIHAL-CNLCEWKHVATLLNEMVDSKIMP 269
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ VV+ + + A V M +RG P + +++G + E A V
Sbjct: 270 -DVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTYTALMDGHCLLSEMDEAVKV 328
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/259 (21%), Positives = 104/259 (40%), Gaps = 19/259 (7%)
Query: 93 RPRSRPKIA-----YDYLLSYTLQSLHPLPL-------ALAILQRTLRSGCVP--VPQIR 138
RP SRP + LS + H L A++ R LR P V +
Sbjct: 7 RPSSRPSGTQMLSLLPHFLSLSHNRFHSKSLHFNTIDGAISSFNRMLRMQPPPSTVDFNK 66
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
LL S A ++ S++ +M S G P+ T + L++S C ++++ A VL +
Sbjct: 67 LLTSIAKMKHHSTLLSLSH---QMDSFGIPPNIYTLHILINSFCHLNRVGFAFSVLAKIL 123
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
PD +++ +I + K +A+ + +M+ G P + L
Sbjct: 124 KLGHQPDTATFTTLIRGICVEGKIGEALHLFDKMI-GEGFRPDVVTYGTLINGLCKVGNT 182
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
A+ ++ + +K C Y +++ + R+ A M +G P I +
Sbjct: 183 SAAIRLLGSMVQKNCQPNVFAYNTIIDSLCKDRQVTEAFNLFSEMVTKGISPDIFTYNSL 242
Query: 319 VEGLAGVGEWK-LATVVRQ 336
+ L + EWK +AT++ +
Sbjct: 243 IHALCNLCEWKHVATLLNE 261
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ + N L++ C I ++ +A + M E +PD +YS +I + + DA
Sbjct: 390 GCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIPDTVTYSTLIHGLCHVERLQDA 449
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + EMV +P + L NR + +A+ +++ +E Q + ++
Sbjct: 450 IALFHEMVA-CSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEGSNLDPDIQVNNIAID 508
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G E A ++ +G P + ++ GL G
Sbjct: 509 GMCRAGELEAARDLFSNLSSKGLQPDVWTYSIMINGLCRRG 549
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 64/134 (47%), Gaps = 2/134 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y LL Y ++ + L A+A+L+ S P Q+ + + R + ++ D+
Sbjct: 466 VTYRILLDYLCKNRY-LAEAMALLKAIEGSNLDPDIQVNNIAIDG-MCRAGELEAARDLF 523
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+ S G PD T + +++ LC L EA+K+ + M C + Y+ +
Sbjct: 524 SNLSSKGLQPDVWTYSIMINGLCRRGLLDEASKLFREMDENGCTLNGCIYNTITRGFLRN 583
Query: 220 RKTNDAVEMMKEMV 233
+T+ A+++++EMV
Sbjct: 584 NETSRAIQLLQEMV 597
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 41/195 (21%), Positives = 77/195 (39%), Gaps = 20/195 (10%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C+ + VA +L EM PD + N +V +LC ++ EA V+ M P++ +Y
Sbjct: 250 CEWKHVATLLNEMVDSKIMPDVVSFNTVVDALCKEGKVTEAHDVVDKMIQRGVEPNVVTY 309
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANR--------- 256
+ ++ + ++AV++ MV G MP ++ R ++
Sbjct: 310 TALMDGHCLLSEMDEAVKVFDTMVCK-GCMPNVISYNTLINGYCKIQRIDKAIHYTXLMD 368
Query: 257 ------EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
M +AV++ + + KGC Y ++ G + + A M + IP
Sbjct: 369 XXCCYLNMDEAVKVFDTMVCKGCMPNVISYNTLINGYCKIQRIDKAMYLFGEMCRQELIP 428
Query: 311 YIKVRQKVVEGLAGV 325
++ GL V
Sbjct: 429 DTVTYSTLIHGLCHV 443
Score = 38.5 bits (88), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 38/169 (22%), Positives = 67/169 (39%), Gaps = 4/169 (2%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S + C + + D + EM + P+ T L+ LC L EA +LK +
Sbjct: 434 STLIHGLCHVERLQDAIALFHEMVACSQIPNLVTYRILLDYLCKNRYLAEAMALLKAIEG 493
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD++ +I I M A + A ++ + + GL P + L +
Sbjct: 494 SNLDPDIQVNNIAIDGMCRAGELEAARDLFSNLS-SKGLQPDVWTYSIMINGLCRRGLLD 552
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A ++ ++ GC + Y + G L E A + + M RGF
Sbjct: 553 EASKLFREMDENGCTLNGCIYNTITRGFLRNNETSRAIQLLQEMVARGF 601
>gi|449439559|ref|XP_004137553.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g18020-like [Cucumis sativus]
Length = 646
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/146 (22%), Positives = 69/146 (47%), Gaps = 7/146 (4%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESY 209
S + + L+EM PD T N ++ C + + EA KVL M + C PD ++
Sbjct: 393 NSTELLNTLVEMLQTNCQPDVITLNTVIKGFCKVGSIEEALKVLNDMIGGKFCTPDHVTF 452
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+ +I + + ++++++ +++ G++P VI A +R ++ +A + + +
Sbjct: 453 TTIIFGLLNVGRIRESLDILYKVMPEKGIVPG---VITYNATIRGLFKLQQANQAMNTFD 509
Query: 270 ---RKGCPIGFQGYEVVVEGCLECRE 292
R G Y VV++G +C +
Sbjct: 510 RMVRNGIQADSTTYAVVIDGLCDCNQ 535
Score = 38.5 bits (88), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 31/120 (25%), Positives = 57/120 (47%), Gaps = 9/120 (7%)
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA---VEMMKEM 232
+LV SLC + E + + M + VP+ +Y +I ++ A++ + A V +M++
Sbjct: 243 HLVDSLCLVGSFHEVFTIAEDMPQGQSVPEEFAYGQMIDSLCKAKRYHGASRIVYIMRKK 302
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
LN GL+ ++ ++ R VE +EF G Y+V++EG C+E
Sbjct: 303 GLNPGLLSYNSIIHGLSKEGGCMRAYQLLVEGVEF----GYSPSEHTYKVLLEGL--CKE 356
>gi|15221515|ref|NP_176447.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75213223|sp|Q9SXD8.1|PPR90_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g62590
gi|5454201|gb|AAD43616.1|AC005698_15 T3P18.15 [Arabidopsis thaliana]
gi|332195860|gb|AEE33981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 634
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N LV+ C D+L +A ++ + M S +C PD+ +Y+ +I +++ D E+
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 423 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + P+L +++ +I A K +A ++ +M+ + P + +
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSIDPDIFTYNSLVNGFCMH 378
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ KA +M EF+ K C Y +++G + + + M+ RG +
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 439 TTLIQGLFHDGD 450
Score = 47.4 bits (111), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ LALA+L + ++ G P ++ S+ L C + ++D ++ +M +GY PD
Sbjct: 136 ISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ L ++ EA ++ M C P+L +Y +V+ + T+ A+ ++ +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251
Score = 39.7 bits (91), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ C Q+ A +L M P + + S ++ ++ +DAV ++ +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
V MG P + L + + +AV +++ + ++GC Y VVV G
Sbjct: 182 V-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
>gi|297836334|ref|XP_002886049.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297331889|gb|EFH62308.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 755
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 91/208 (43%), Gaps = 6/208 (2%)
Query: 139 LLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+ + S++L C + + + I E+ +G PDC ++ C + + +A +
Sbjct: 440 IFVYSSFLSNICSTGDMLRASTIFQEIFELGLLPDCYCYTTMIDGYCTLGRTDKAFQFFG 499
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ + P L +Y+++IGA S +DA + + M GL P +
Sbjct: 500 ALLKSGNPPSLITYTLLIGACSKFGSISDAESVFRIMKTE-GLHPDVVTYNNLMYGYGKT 558
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL-AGKTVMGMTERGFIPYIKV 314
++ K E+I+ + G Y +++ + R Y+ A + + + RGF+P
Sbjct: 559 HQLNKVFELIDEMRSAGISPDVATYNILIHS-MVVRGYVDEANEIISELIRRGFVPSALA 617
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAELK 342
V+ GL+ G+++ A ++ A+L+
Sbjct: 618 FTDVIGGLSKRGDFQEAFILWFYMADLR 645
Score = 44.3 bits (103), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 45/178 (25%), Positives = 78/178 (43%), Gaps = 9/178 (5%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q V +++ EM+S G PD T N L+ S+ + EA +++ + VP +++
Sbjct: 560 QLNKVFELIDEMRSAGISPDVATYNILIHSMVVRGYVDEANEIISELIRRGFVPSALAFT 619
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL----RANREMWKAVEMIE 266
VIG +S +A + M ++ + P V+ +A L RA R M KA+ + +
Sbjct: 620 DVIGGLSKRGDFQEAFILWFYMA-DLRVKPD---VVTCSALLHGYCRAQR-MEKAIVLFD 674
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
L G Y ++ G + A + + M +RG +P +V GL G
Sbjct: 675 KLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMVQRGMLPNESTHHALVVGLEG 732
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 72/183 (39%), Gaps = 8/183 (4%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
N ++IDEM + I P +A +L +++ + A I+ +R G VP
Sbjct: 562 NKVFELIDEMRSAGIS------PDVATYNILIHSMVVRGYVDEANEIISELIRRGFVP-S 614
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+ L +R Q + M + PD TC+ L+ C ++ +A +
Sbjct: 615 ALAFTDVIGGLSKRGDFQEAFILWFYMADLRVKPDVVTCSALLHGYCRAQRMEKAIVLFD 674
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ A PD+ Y+ +I + A E++ MV G++P + + L
Sbjct: 675 KLLDAGLKPDVVLYNTLIHGYCSVGDIEKACELIGLMV-QRGMLPNESTHHALVVGLEGK 733
Query: 256 REM 258
R M
Sbjct: 734 RFM 736
>gi|356560325|ref|XP_003548443.1| PREDICTED: pentatricopeptide repeat-containing protein At3g61520,
mitochondrial-like [Glycine max]
Length = 746
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/202 (22%), Positives = 88/202 (43%), Gaps = 12/202 (5%)
Query: 138 RLLLSSAWLERRCQS------------QSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
+L L+ L+R C + + V ++L EM+ G PD T N L+S L
Sbjct: 523 KLKLAGFSLDRSCYNVLISGFCKKKKLERVYELLTEMEETGVKPDTITYNTLISYLGKTG 582
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
A+KV++ M P + +Y +I A + + ++ +++ EM + P +
Sbjct: 583 DFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGEMCSTSKVPPNTVIY 642
Query: 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ AL N ++ +A+ ++E ++ K Y +++G + + A + + M E
Sbjct: 643 NILIDALCRNNDVDRAISLMEDMKVKRVRPNTTTYNAILKGVRDKKMLHKAFELMDRMVE 702
Query: 306 RGFIPYIKVRQKVVEGLAGVGE 327
P + + E L+ VGE
Sbjct: 703 EACRPDYITMEVLTEWLSAVGE 724
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 36/177 (20%), Positives = 75/177 (42%), Gaps = 11/177 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMK G + T L+S+ C ++ + A + + M S+ C PD Y +I + A
Sbjct: 453 EMKGKGLKGNAATYTALISAFCGVNNINRAMQCFEEMLSSGCSPDAVVYYSLISGLCIAG 512
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ NDA ++ ++ L + R + ++ + +++ + E++ +E G Y
Sbjct: 513 RMNDASVVVSKLKLAGFSLDRSCYNVLISGFCK-KKKLERVYELLTEMEETGVKPDTITY 571
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKV----------RQKVVEGLAGVGE 327
++ + ++ A K + M + G P + ++ V EG+ GE
Sbjct: 572 NTLISYLGKTGDFATASKVMEKMIKEGLRPSVVTYGAIIHAYCSKKNVDEGMKIFGE 628
Score = 38.5 bits (88), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 87/232 (37%), Gaps = 47/232 (20%)
Query: 118 LALAILQRTLR-SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
+A +L +R G V LL+ WL R + + ++L EM+ P T
Sbjct: 264 VAWEVLHCVMRLGGAVDAASCNALLT--WLGRGRDIKRMNELLAEMEKRKIRPSVVTFGI 321
Query: 177 LVSSLCAIDQLVEAAKV---LKGMSSAECV---PDLESYSIVIGAMSTARKTNDAVEMMK 230
LV+ LC ++ EA +V L+G + V PD+ ++ +I + K D + +++
Sbjct: 322 LVNHLCKARRIDEALQVFDRLRGKGGSNWVGVEPDVVLFNTLIDGLCKVGKEEDGLSLLE 381
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
EM MG + R V Y +++G +
Sbjct: 382 EM--KMGNINRPNTVT---------------------------------YNCLIDGFFKA 406
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ A + M E G P + +V+GL G A + F E+K
Sbjct: 407 GNFDRAHELFRQMNEEGVQPNVITLNTLVDGLCKHGRVHRAV---EFFNEMK 455
>gi|449435202|ref|XP_004135384.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
protein At1g22960, mitochondrial-like [Cucumis sativus]
Length = 717
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 67/171 (39%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G+ PD T N V +LC EA +L+ M S +PD +Y+ +I
Sbjct: 485 EMLAAGFPPDVITYNVFVHALCQQGNFEEACDLLENMVSDGLIPDHVTYTSIINGFVKNG 544
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
A E+ EM L+ G+ P + A A + + A + K P Y
Sbjct: 545 HLRKAREVFNEM-LSKGVAPSVVTYTVLIHAHAAKQMLDLAFMYFSKMLEKSVPANVITY 603
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G R A K M E+G +P ++ +G W+ A
Sbjct: 604 NAIINGLCMTRRMDEAYKYFDEMEEKGILPNKFSYTILINESCNMGYWEEA 654
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 47/217 (21%), Positives = 87/217 (40%), Gaps = 18/217 (8%)
Query: 139 LLLSSAWLERRCQS---QSVADILL-----------EMKSIGYHPDCGTCNYLVSSLCAI 184
L+ ++ W+ R S V D+L+ +M G PD CN ++ L
Sbjct: 134 LMHAAYWVMERVVSFEMHGVVDVLIAGHVXCLLVFDKMIRNGLLPDVKNCNRILRVLRDE 193
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+ L +A V M P + +Y+ ++ + + + A+E++ EM G P
Sbjct: 194 NLLSKAKNVYGMMEQFGIKPTVVTYNTMLDSYCKEGRVDQALELLSEM-QERGCYPNDVT 252
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304
+ L E+ +A +IE + G + Y ++ G + ++ A V M
Sbjct: 253 YNVLVNGLSKKGELEQAKGLIEEMLNSGLNVSAYTYNPLINGFCQKGLFVEAFDLVEEMV 312
Query: 305 ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
R P + ++ GL +W T VR RF+++
Sbjct: 313 NRRAFPTLSTYNTLMYGLC---KWVQVTGVRLRFSDM 346
>gi|299473702|emb|CBN78095.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 537
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 103/225 (45%), Gaps = 7/225 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE--RRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL+++++ R G +P + +SA + + Q + ++L EM+S G PD + +
Sbjct: 220 ALSLMEKMSREGLLP---DKTAYNSAIIACGEKGQWEKALNLLGEMRSKGLRPDQNSYRF 276
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+ + + A ++L M PD+ ++ + A+ A + A++++ EM +
Sbjct: 277 AMQACSTGGRWERALQLLHEMEEDGSTPDVAAFQTALDALKDAAQWEKAMDLISEMD-EL 335
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+ P +G AA E A + + G + Y+ +++ CL +E+ +A
Sbjct: 336 GVPPSEGCFAAAIAACAEVGEWLPASTARKLMGYYGLQPELETYKSIIKACLVGKEFNMA 395
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-TVVRQRFAE 340
T+ + + G + ++E A VG+W A ++R FAE
Sbjct: 396 LTTLFDLQKSGRRADQETWDMLIEICAVVGKWDAALEIIRDIFAE 440
>gi|147866209|emb|CAN83683.1| hypothetical protein VITISV_017537 [Vitis vinifera]
Length = 833
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/173 (24%), Positives = 78/173 (45%), Gaps = 5/173 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T L+ + C I +A K+L M++ CVP++ +Y+I+I +
Sbjct: 224 EMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTILIDRLCREG 283
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW--KAVEMIEFLERKGCPIGFQ 278
K +A + ++M L GL P G++ A +E W A +++ +E+ C +
Sbjct: 284 KIEEANGVFRKM-LKHGLCP--GIITFNALINGYCKEGWVVSAFQLLSVMEKGNCKPNIR 340
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++EG + A + + + G +P +V+G G+ +A
Sbjct: 341 TYNELMEGLCRVSKSYKAFLLLRRVVDNGLLPDRVTYNILVDGFCKEGQLNMA 393
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 73/167 (43%), Gaps = 7/167 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTN 223
+G+ D C LV + C D L EA +V + MS E C P+ +YSI+I + A +
Sbjct: 157 LGFGLDTHVCTSLVLANCRRDDLGEAFRVFEKMSKEESCRPNSVTYSILIHGLCEAGRLE 216
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+A ++ +EMV G P + A KA++M++ + K C Y ++
Sbjct: 217 EAFQLKQEMV-EKGCQPSTRTYTVLIKAKCDIGMTDKAMKMLDEMATKACVPNVHTYTIL 275
Query: 284 VEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
++ CRE + A M + G P I ++ G G W
Sbjct: 276 IDRL--CREGKIEEANGVFRKMLKHGLCPGIITFNALINGYCKEG-W 319
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 64/131 (48%), Gaps = 8/131 (6%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPD 170
+ L A A+L + ++ G VP ++ + +E C++ A +L MK G P+
Sbjct: 493 YKLNEANAMLGKMMKYGLVP----SVVTHTILIEGHCRAGETALSLKMLERMKQAGCSPN 548
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T +++ LC ++ EA +L MSS P+ +Y++++ A A + + A +++
Sbjct: 549 VYTYTIIINGLCNNGRVEEAETILFSMSSFGVSPNHFTYAVLVKAHVKAGRLDRAFQIVS 608
Query: 231 EMVLNMGLMPR 241
MV N G P
Sbjct: 609 TMVKN-GCQPN 618
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 85/216 (39%), Gaps = 2/216 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L+R + +G +P +L + + Q +I M S G PD T L+
Sbjct: 358 AFLLLRRVVDNGLLPDRVTYNILVDGFC-KEGQLNMAFNIFNSMNSAGLEPDGFTFTALI 416
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + +L +A +L M D +++ +I K D + + MV N L
Sbjct: 417 DGLCKLGRLEQANGILGSMVKKGISLDEVTFTALIDGHCKIGKAKDVCFLFENMVENRCL 476
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
AL + ++ +A M+ + + G + +++EG E L+ K
Sbjct: 477 TTAHTFNC-FLDALGKDYKLNEANAMLGKMMKYGLVPSVVTHTILIEGHCRAGETALSLK 535
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ M + G P + ++ GL G + A +
Sbjct: 536 MLERMKQAGCSPNVYTYTIIINGLCNNGRVEEAETI 571
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 38/174 (21%), Positives = 79/174 (45%), Gaps = 5/174 (2%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T + L+ LC +L EA ++ + M C P +Y+++I A T+ A++M
Sbjct: 197 PNSVTYSILIHGLCEAGRLEEAFQLKQEMVEKGCQPSTRTYTVLIKAKCDIGMTDKAMKM 256
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+ EM + I + R + + L+ CP G + ++ G
Sbjct: 257 LDEMATKACVPNVHTYTILIDRLCREGKIEEANGVFRKMLKHGLCP-GIITFNALING-- 313
Query: 289 ECRE-YILAGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
C+E ++++ ++ + E+G P I+ +++EGL V + A ++ +R +
Sbjct: 314 YCKEGWVVSAFQLLSVMEKGNCKPNIRTYNELMEGLCRVSKSYKAFLLLRRVVD 367
>gi|449444190|ref|XP_004139858.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
gi|449530677|ref|XP_004172320.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Cucumis sativus]
Length = 839
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 55/250 (22%), Positives = 102/250 (40%), Gaps = 20/250 (8%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALA----------ILQRTLRSGCVPVPQIRLLLSSAWLER 148
+I Y YTL S L + L + L SG P L +A ++
Sbjct: 156 EINTTYDFGYTLYSFSTLLIQLGKFDMDGLGRDVYIEMLNSGIRP----NLFTFNAMIKI 211
Query: 149 RCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C V + L M I ++ PD T L+ C L A ++ M C P+
Sbjct: 212 LCNKGKVQEAELIMGHIFHYGACPDTFTYTSLIIGHCKNGNLDLAFEMFDRMVKDGCDPN 271
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEM 264
+YS +I + + + +A++M++EM+ + G+ P I + + A R +AV++
Sbjct: 272 SVTYSALINGLCSEGRLEEAMDMLEEMI-DKGIEPTVHAYTIPIVSLCDAGRSC-EAVKL 329
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+ ++++GC Q Y ++ G ++ +A M G +P ++ L
Sbjct: 330 LGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKMLADGLVPTAVTYSALINQLYV 389
Query: 325 VGEWKLATVV 334
G ++ A +
Sbjct: 390 EGRFETALTI 399
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 73/174 (41%), Gaps = 8/174 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCG 172
L LA + R ++ GC P + SA + C + D+L EM G P
Sbjct: 253 LDLAFEMFDRMVKDGCDP----NSVTYSALINGLCSEGRLEEAMDMLEEMIDKGIEPTVH 308
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ SLC + EA K+L M C P++++Y+ +I +S K A+ + +M
Sbjct: 309 AYTIPIVSLCDAGRSCEAVKLLGKMKKRGCGPNVQTYTALISGLSRDGKFEVAIGVYHKM 368
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ + GL+P + L A+ + E++ + Y V+++G
Sbjct: 369 LAD-GLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSLPNTETYNVIIKG 421
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 51/234 (21%), Positives = 94/234 (40%), Gaps = 12/234 (5%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ 136
H + +EM+E I + I YL ++ + ALA+ + + SG VP
Sbjct: 500 HAFSLFNEMVEHGISPNVVTYNAIINGYL------TVAKVDDALALFWKMVESGNVPSSG 553
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
++ S + + S++ + +M G P+ T + LC + A K+
Sbjct: 554 TYNMMISGFSKTNRISEA-ENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAFKIFHE 612
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M + P+L +YS +I + + DA E +L+ G P + L
Sbjct: 613 MKKRDYFPNLCTYSSLIDGLCQEGQAEDA-----ERLLDDGCEPNVDTYTTLVRGLCGKG 667
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
++A +++E +++KG + Y ++ G + E A K M GF P
Sbjct: 668 RCYEADQLVESMKKKGLQPSEEIYRALLVGQCKNLEVESALKIFDSMVTTGFQP 721
Score = 44.3 bits (103), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 39/208 (18%), Positives = 84/208 (40%), Gaps = 6/208 (2%)
Query: 118 LALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQ-SVADILLEMKSIGYHPDCGTCN 175
+A+ + + L G VP L++ ++E R ++ ++ + +L S+ P+ T N
Sbjct: 360 VAIGVYHKMLADGLVPTAVTYSALINQLYVEGRFETALTIFEWMLSHDSL---PNTETYN 416
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ C+I + +A + M A P++ +Y+I+I N+A+ ++ EM+
Sbjct: 417 VIIKGFCSIGYIQKATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMRLL-EMMKG 475
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL + + ++ A + + G Y ++ G L +
Sbjct: 476 NGLKLDTWTYANLISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDD 535
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A M E G +P ++ G +
Sbjct: 536 ALALFWKMVESGNVPSSGTYNMMISGFS 563
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 44/210 (20%), Positives = 85/210 (40%), Gaps = 4/210 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM-KSIGYHPDCGTCNYL 177
A AI + L++G P ++ + ++ + ++ LLEM K G D T L
Sbjct: 431 ATAIFDQMLKAGPSPNVITYNIIIHIYFKQGYMNNAMR--LLEMMKGNGLKLDTWTYANL 488
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+S +L A + M P++ +Y+ +I T K +DA+ + +MV G
Sbjct: 489 ISGFSRGGKLEHAFSLFNEMVEHGISPNVVTYNAIINGYLTVAKVDDALALFWKMV-ESG 547
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+P G + + + +A + ++G Y ++G + LA
Sbjct: 548 NVPSSGTYNMMISGFSKTNRISEAENFCGKMVKQGLLPNVITYTSFIDGLCKNGRTSLAF 607
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K M +R + P + +++GL G+
Sbjct: 608 KIFHEMKKRDYFPNLCTYSSLIDGLCQEGQ 637
>gi|242094006|ref|XP_002437493.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
gi|241915716|gb|EER88860.1| hypothetical protein SORBIDRAFT_10g028090 [Sorghum bicolor]
Length = 1039
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/156 (21%), Positives = 73/156 (46%), Gaps = 1/156 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ P T +++ C +++ +A +V M S++C DL++Y ++I + + +A
Sbjct: 387 GFSPTVITFTNIINGYCKAEKIDDALRVKSIMISSKCKLDLQAYGVLISVLIKKHRLKEA 446
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + E+ N GL P + + A ++ A+E+ + E +GC Y ++
Sbjct: 447 KDTLNEIFAN-GLSPNVVIYTSIIDAYCKVGKVGAALEVFKLTEHEGCRPNAWTYSSLIY 505
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
G ++ ++ A + M E G P + +++G
Sbjct: 506 GLIQDQKLHKAMALITKMQEDGITPGVITYTTLIQG 541
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 38/194 (19%), Positives = 80/194 (41%), Gaps = 15/194 (7%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ ++ EM+ G PD T N ++ + + A LK M A C P+ +Y ++
Sbjct: 721 EEAGHLIGEMERNGVAPDVVTYNVFINGCGHMGYMDCAFSTLKRMIDASCEPNYWTYWLL 780
Query: 213 IG-----AMSTARKTN----------DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ +++ A + D V + E ++ GL P + A
Sbjct: 781 LKHFLKMSLANAHYVDTSGMWNWIKLDTVWQLLERMVKHGLNPTAVTYSSIIAGFCKATR 840
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A +++ + K + Y ++++ C + + + A V M E GF P+++
Sbjct: 841 LEEACVLLDHMLGKDISPNEEIYTMLIKCCCDIKLFEKAASFVTNMIECGFQPHLESYHY 900
Query: 318 VVEGLAGVGEWKLA 331
++ GL G++ A
Sbjct: 901 LITGLCDEGDYDKA 914
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 3/138 (2%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ A ++ +M + G D T + L+ +LC +L EA +L M+ ++ +Y+
Sbjct: 614 NTEFAAALIEKMVNEGCKADSHTYSVLLQALCKQKKLNEALSILDQMTLRGVKGNIVAYT 673
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLE 269
I+I M K + A M EM+ + G P + +++ + R + +A +I +E
Sbjct: 674 IIISEMIKEGKHDHAKSMFNEMI-SSGHKPSAITYTVFISSYCKIGR-IEEAGHLIGEME 731
Query: 270 RKGCPIGFQGYEVVVEGC 287
R G Y V + GC
Sbjct: 732 RNGVAPDVVTYNVFINGC 749
>gi|22531122|gb|AAM97065.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
gi|62320656|dbj|BAD95323.1| putative membrane-associated salt-inducible protein [Arabidopsis
thaliana]
Length = 596
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N LV+ C D+L +A ++ + M S +C PD+ +Y+ +I +++ D E+
Sbjct: 325 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 384
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 385 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 441
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L
Sbjct: 222 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 281
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + P+L +++ +I A K +A ++ +M+ + P + +
Sbjct: 282 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSIDPDIFTYNSLVNGFCMH 340
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ KA +M EF+ K C Y +++G + + + M+ RG +
Sbjct: 341 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 400
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 401 TTLIQGLFHDGD 412
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ LALA+L + ++ G P ++ S+ L C + ++D ++ +M +GY PD
Sbjct: 98 ISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 153
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ L ++ EA ++ M C P+L +Y +V+ + T+ A+ ++ +M
Sbjct: 154 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 213
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ C Q+ A +L M P + + S ++ ++ +DAV ++ +M
Sbjct: 84 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 143
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
V MG P + L + + +AV +++ + ++GC Y VVV G
Sbjct: 144 V-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 196
>gi|297852926|ref|XP_002894344.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297340186|gb|EFH70603.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 650
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L + G V + + SA L + Q + D+ +MK G PD T N L+
Sbjct: 426 AIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SS + ++ EA + + + ++C PD+ SY+ +I + ++A KEM GL
Sbjct: 485 SSFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGL 543
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
P + + A + E + KGC Y ++++ CLE
Sbjct: 544 NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD-CLE 593
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 68/151 (45%), Gaps = 17/151 (11%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L A+L R S++ D+ E++ G+ D N L+ +L A D+ +A +V + M
Sbjct: 209 LLQAYLRSRDSSKAF-DVYCEIRRGGHKLDIFAYNMLLDAL-AKDE--KACQVFEDMKKR 264
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRA 254
C D SY+I+I M K ++AV + EM+ +G+ + V L
Sbjct: 265 HCRRDEYSYTIMIRTMGRIGKYDEAVGLFNEMIT-------EGLTLNVVGYNTLMQVLAK 317
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ + KA+++ + GC Y +V+
Sbjct: 318 GKMVDKAIQVFSRMVETGCRPNEYTYSLVLN 348
>gi|255661006|gb|ACU25672.1| pentatricopeptide repeat-containing protein [Lantana canescens]
Length = 376
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/231 (20%), Positives = 98/231 (42%), Gaps = 9/231 (3%)
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
Y +SLH L +A + G + ++++ L + + + +L M G
Sbjct: 108 GYINKSLHILEIA------EQKGGVLDAFAYSAMINA--LCKESKLEKAVSVLNGMIRSG 159
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P+ N L+ L + +A ++ + M + +C P++ +YSI+I + + +A
Sbjct: 160 CKPNTHVYNALIKGLIGASKRDDAVRIFREMGTTDCPPNIATYSILIDGLCKGERFGEAY 219
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+++KEM L GL P + L ++ A+++ + +KG Q + +++ G
Sbjct: 220 DLVKEM-LEKGLNPSVITYSLLMKGLCLGHKVEMALQLWNQVTKKGFKPDVQMHNILIHG 278
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ LA + M P + + ++EG G + A V+ R
Sbjct: 279 LCSVGKTQLALSLYLDMNRWNCAPNLVTQNTLMEGFYKDGNVRNALVIWAR 329
>gi|15232008|ref|NP_187518.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75207466|sp|Q9SS81.1|PP221_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g09060
gi|5923671|gb|AAD56322.1|AC009326_9 hypothetical protein [Arabidopsis thaliana]
gi|332641194|gb|AEE74715.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 687
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 11/258 (4%)
Query: 82 IDE--MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
IDE M+ +P + + K Y + + L + AL ++Q SG + +
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFI-HGLCVNGYVNKALGVMQEVESSG----GHLDV 429
Query: 140 LLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
++ ++ C+ + ++++ EM G + CN L+ L +L EA+ L+
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLRE 489
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C P + SY+I+I + A K +A +KEM+ N G P + L +R
Sbjct: 490 MGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLEN-GWKPDLKTYSILLCGLCRDR 548
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
++ A+E+ + G + +++ G + A + M R +
Sbjct: 549 KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608
Query: 317 KVVEGLAGVGEWKLATVV 334
++EG VG+ ATV+
Sbjct: 609 TLMEGFFKVGDSNRATVI 626
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 119 ALAILQRTLRS--GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL + +R +R GC P + L +A++E + Q V + ++ G P+ T N
Sbjct: 97 ALDVFKR-MREIFGCEPAIRSYNTLLNAFVEAK-QWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ C + +A L M PD+ SYS VI ++ A K +DA+E+ EM
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEM 210
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 9/264 (3%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++R+ + A V+AK + ++ L FE A PN ++ + + K E F
Sbjct: 113 AIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEF-EKARGF 171
Query: 90 IPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+ + +P + + L L AL + G P +L +L+
Sbjct: 172 LDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK 231
Query: 148 RRCQSQSVA--DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
+ ++ D LLE S+ +P+ T N ++S L ++ + K+ + M E D
Sbjct: 232 EKDHKTAMELWDRLLEDSSV--YPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
L +YS +I + A + A + E+ + + R + + +++E+
Sbjct: 290 LYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGK-IKESLELW 348
Query: 266 EFLERKGCPIGFQGYEVVVEGCLE 289
+E K + Y ++++G LE
Sbjct: 349 RIMEHKN-SVNIVSYNILIKGLLE 371
>gi|449435168|ref|XP_004135367.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Cucumis sativus]
Length = 962
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 4/206 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + SGC+P L +E+R + + IL EM G P+ T ++
Sbjct: 610 ALDVFDMMRMSGCIPTVHTYNALILGLVEKR-KMEKAEQILDEMTLAGVSPNEHTYTTIM 668
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ +A + D+ +Y ++ A + + A+ + KEM
Sbjct: 669 HGYASLGDTGKAFTYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQN-- 726
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++R+G Y + C + + A
Sbjct: 727 IPRNTFIYNILIDGWARRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRAT 786
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLA 323
KT+ M G P +K ++ G A
Sbjct: 787 KTIEEMKSVGVKPNVKTYTTLINGWA 812
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 84/213 (39%), Gaps = 5/213 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++ T + V+ + ++ ++L A +PN ++ + + + F
Sbjct: 625 TVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFTYF 684
Query: 90 IPLRPRSRPKIAYDY--LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
LR Y Y LL +S + ALA+ + I +L W
Sbjct: 685 TKLRDEGLQLDVYTYEALLKACCKSGR-MQSALAVTKEMSAQNIPRNTFIYNILIDGWA- 742
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR AD++ +MK G PD T +++ + A K ++ M S P+++
Sbjct: 743 RRGDIWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVK 802
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y+ +I + A A+ +EM L+ GL P
Sbjct: 803 TYTTLINGWARASLPEKALSCFEEMKLS-GLKP 834
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G + T + L++ + A + + + PD+ Y+ +I A
Sbjct: 511 EMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMG 570
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + AV +KEM P + + EM KA+++ + + GC Y
Sbjct: 571 KMDRAVCTVKEM-QKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTY 629
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G +E R+ A + + MT G P ++ G A +G+
Sbjct: 630 NALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 676
>gi|255561341|ref|XP_002521681.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223539072|gb|EEF40668.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 458
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 74/161 (45%), Gaps = 6/161 (3%)
Query: 138 RLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
L+ + ++ C S+++ + +L ++ G+ PDC N ++ C + + +A +V
Sbjct: 224 NLVTYTILIDNVCNSKNLREAMRLLGILRECGFKPDCFVYNTIMKGYCMLSKGSDAIQVF 283
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
K M PDL +Y+ +I +S + ++A +K MV G P + L
Sbjct: 284 KKMKEEGIEPDLITYNTLIFGLSKGGRVSEAKRYLKIMV-ESGHFPDAVTYTSLMNGLCR 342
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ A+ ++E +E KGC Y ++ G C+E +L
Sbjct: 343 KGDALGALALLEDMEMKGCSPNSCTYNTLLYGL--CKERLL 381
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 46/231 (19%), Positives = 98/231 (42%), Gaps = 5/231 (2%)
Query: 99 KIAYDYLLSYTLQSLHPLPLALAILQ---RTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
+ + +L SY+ S+ + ++++L+ +TL S + +LLS + V
Sbjct: 81 RFHHSFLQSYS--SISTIDDSISLLRHMIKTLPSFTPTISTYHILLSQSCKAPDPTLSPV 138
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
IL M + G+ P T + V +LC+ + +A K++K +S PD +Y+ ++
Sbjct: 139 HQILNLMVNNGFMPTQVTVDIAVRALCSAGKEDDAVKLVKELSLKHSKPDSFTYNFLVKC 198
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ R ++ + EM + L P + + ++ + +A+ ++ L G
Sbjct: 199 LCKCRALSNVYSFIDEMRSSFDLEPNLVTYTILIDNVCNSKNLREAMRLLGILRECGFKP 258
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++G + A + M E G P + ++ GL+ G
Sbjct: 259 DCFVYNTIMKGYCMLSKGSDAIQVFKKMKEEGIEPDLITYNTLIFGLSKGG 309
>gi|357162631|ref|XP_003579471.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12300,
mitochondrial-like [Brachypodium distachyon]
Length = 544
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 84/192 (43%), Gaps = 4/192 (2%)
Query: 146 LERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
L+ C S + AD L+ M+ G HPD N + LC + ++++ S
Sbjct: 206 LKAYCASGDIQAADALISSMRLSGCHPDVVIYNIYIHGLCKVGDFDAVERIIEESSRNGW 265
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VPD +YS I + + DA ++ MV + G+ I + A + + +MW +
Sbjct: 266 VPDAVTYSTFIAGLCRSGYVEDAFRQLEIMVAKGLQLTVVGLNILLDYAGQ-DLDMWVSK 324
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E++E E G + Y V++ + +++ K + ++ P ++ ++ L
Sbjct: 325 EVLERCEELGFEVDVVTYNTVMDHFCKKMKWLRVLKLFTDLLKKPITPNVQTYNILISCL 384
Query: 323 AGVGEWKLATVV 334
G+++LA V
Sbjct: 385 CRAGKFQLAEFV 396
>gi|298204849|emb|CBI34156.3| unnamed protein product [Vitis vinifera]
Length = 442
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 99/242 (40%), Gaps = 12/242 (4%)
Query: 107 SYTLQSLH--PLPLALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILL 160
++ +SLH L AL+ R L P P I +LL S A ++ +V +
Sbjct: 15 NFHSKSLHFNTLDDALSSFNRLLHMH--PPPSIVDFAKLLTSIAKMKHY---STVLSLST 69
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T N L++S C ++++ A VL + PD +++ +I +
Sbjct: 70 QMDSFGVPPNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTFTTLIRGLCVEG 129
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A+ + +M+ + G P + L A+ ++ +E+ C Y
Sbjct: 130 KIGEALHLFDKMI-DEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIY 188
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+++ + R+ A M +G P I +V L + EWK T + +
Sbjct: 189 TSIIDSLCKDRQVTEAFNLFSQMVGQGISPDIFTYTSLVHALCNLCEWKHVTTLLNQMVN 248
Query: 341 LK 342
K
Sbjct: 249 SK 250
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/229 (21%), Positives = 95/229 (41%), Gaps = 12/229 (5%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
P + +L + L+ + A ++L + L+ G P P + + C + +
Sbjct: 78 PNVYTLNILINSFCHLNRVGFAFSVLAKILKLGHQPDPTTF----TTLIRGLCVEGKIGE 133
Query: 158 ILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L +M G+ P+ T L++ LC + A ++L+ M C PD+ Y+ +I
Sbjct: 134 ALHLFDKMIDEGFQPNVVTYGTLINGLCKVGNTSAAIRLLRSMEQGNCQPDVVIYTSIID 193
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI--EFLERKG 272
++ R+ +A + +MV G+ P + AL N WK V + + + K
Sbjct: 194 SLCKDRQVTEAFNLFSQMV-GQGISPDIFTYTSLVHAL-CNLCEWKHVTTLLNQMVNSKI 251
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
P + VV+ + + A + V M +RG P + +++G
Sbjct: 252 LP-DVVIFSTVVDALCKEGKVTEAHEIVDMMIQRGVEPDVVTYTTLMDG 299
>gi|224079734|ref|XP_002305931.1| predicted protein [Populus trichocarpa]
gi|222848895|gb|EEE86442.1| predicted protein [Populus trichocarpa]
Length = 120
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 1/113 (0%)
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S+ PDL Y+I++ AM + DA E+ E+ + GL P + + L
Sbjct: 1 MQSSSLKPDLVMYNILVDAMCKSGNLKDARELFSELFVK-GLQPNVQIYTTIINGLCKEG 59
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+ +A+E +E GCP Y V++ G L+ ++ A + M +RGFI
Sbjct: 60 LLDEALEAFRNMEEDGCPPDEFSYNVIIRGFLQHKDESRAVHLIGEMRDRGFI 112
>gi|255660960|gb|ACU25649.1| pentatricopeptide repeat-containing protein [Verbena halei]
Length = 376
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 11/160 (6%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC L A VL M + C P++ Y+ +I + A K DA+ + +E M
Sbjct: 135 MINGLCKEANLDRALSVLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFRE----M 190
Query: 237 GLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR- 291
G M +I + N +A +++ L KG G Y ++++G CL+ R
Sbjct: 191 GTMHCSPTIITYNTLINGLCKNEMFGEAYNLVKELLDKGLDPGVITYSMLMKGLCLDHRV 250
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
E L + +T +GF P +++ ++ GL VG+ +LA
Sbjct: 251 ERAL--QLWNQVTSKGFKPDVQMHNILIHGLCSVGKMQLA 288
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 37/180 (20%), Positives = 76/180 (42%), Gaps = 1/180 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L +M G P+ N L++ L + +A +V + M + C P + +Y+ +I +
Sbjct: 151 VLNDMIKSGCKPNVHVYNTLINGLVGASKFEDAIRVFREMGTMHCSPTIITYNTLINGLC 210
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+A ++KE+ L+ GL P + L + + +A+++ + KG
Sbjct: 211 KNEMFGEAYNLVKEL-LDKGLDPGVITYSMLMKGLCLDHRVERALQLWNQVTSKGFKPDV 269
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Q + +++ G + LA M P + ++EG G+ + A V+ R
Sbjct: 270 QMHNILIHGLCSVGKMQLALSLYFDMNHWKCAPNLVSHNTLMEGFYKDGDIRNALVIWAR 329
>gi|356541430|ref|XP_003539180.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74900,
mitochondrial-like [Glycine max]
Length = 492
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 78/349 (22%), Positives = 139/349 (39%), Gaps = 76/349 (21%)
Query: 39 RAAVDAKDYQQIPELLGSFEEAC-QNPNPF-SFLSNFPQNHRIKVIDEMLESFIPLRPRS 96
R A K ++ + L E Q+ + F + L +++R++ ++L + L+ R
Sbjct: 145 RYASIGKPHRAVRTFLSMHEHGLHQDLHSFNTLLDILCKSNRVETAHDLLRT---LKSRF 201
Query: 97 RPK-IAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLL--------LSSA 144
RP ++Y+ L + Y L+ P+AL +L+ ++ G P V +L + A
Sbjct: 202 RPDTVSYNILANGYCLKK--RTPMALRVLKEMVQRGIEPTMVTYNTMLKGYFRSNQIKEA 259
Query: 145 W------LERRCQSQSVA------------------DILLEMKSIGYHPDCGTCNYLVSS 180
W +R+C+ V+ + EM G P+ T N L+
Sbjct: 260 WEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKRVFDEMVKEGVAPNVATYNALIQV 319
Query: 181 LCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
C D + A V + M C P++ ++++VI + + +M +G M
Sbjct: 320 FCKKDSVQNAVAVFEEMVREGVCSPNVVTFNVVIRGLC----------HVGDMERALGFM 369
Query: 240 PRQGMVIKVAAALRANREMWKAV--------EMIEFLERKG------CPIGFQGYEVVVE 285
R G LRA+ + + V E+ + LE G C Y V++
Sbjct: 370 ERMG-----EHGLRASVQTYNVVIRYFCDAGEIEKGLEVFGKMGDGLCLPNLDTYNVLIS 424
Query: 286 GCL---ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++AGK +M M ERGF+P +V+ GL G A
Sbjct: 425 AMFVRKKSEDLVVAGKLLMEMVERGFLPRKFTFNRVLNGLVITGNQDFA 473
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/202 (23%), Positives = 87/202 (43%), Gaps = 5/202 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL R+LR G P P+ +L+ + ++V L M G H D + N L+
Sbjct: 122 ALVGRMRSLRLG--PSPKTLAILAERYASIGKPHRAVR-TFLSMHEHGLHQDLHSFNTLL 178
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC +++ A +L+ + S PD SY+I+ ++T A+ ++KEMV G+
Sbjct: 179 DILCKSNRVETAHDLLRTLKS-RFRPDTVSYNILANGYCLKKRTPMALRVLKEMV-QRGI 236
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + ++ +A E ++++ C I Y V+ G E E A +
Sbjct: 237 EPTMVTYNTMLKGYFRSNQIKEAWEFYLEMKKRKCEIDVVSYTTVIHGFGEAGEVKKAKR 296
Query: 299 TVMGMTERGFIPYIKVRQKVVE 320
M + G P + +++
Sbjct: 297 VFDEMVKEGVAPNVATYNALIQ 318
>gi|357455187|ref|XP_003597874.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359582|gb|ABD28711.2| Tetratricopeptide-like helical [Medicago truncatula]
gi|355486922|gb|AES68125.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 822
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 69/306 (22%), Positives = 122/306 (39%), Gaps = 10/306 (3%)
Query: 22 FSSLRSMSSLRTLEETVRAAVD----AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNH 77
F L+ L TLE T A +D A +Q + +LL N N F S +
Sbjct: 263 FEELKLKGFLPTLE-TYGALIDGFCKAGKFQVVDQLLNEMNVMGLNVNVKVFNSIIDAKY 321
Query: 78 RIKVIDEMLESFIPLRPRS-RPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
+ ++D+ E + P I Y+ L++++ S + A L+R +P
Sbjct: 322 KYGLVDKAAEMMRMMTEMGCEPDITTYNILINFSC-SGGRIKEAEEFLERAKERTLLPNK 380
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L A+ ++ +D+L ++ G PD + + A ++ A V +
Sbjct: 381 FSYTPLMHAYC-KQGDYVMASDMLFKIAETGDKPDLVSYGAFIHGSVAGGEIDVALMVRE 439
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M PD + Y++++ + + A ++ EM L++ L P M + N
Sbjct: 440 KMMEKGVFPDAQIYNVLMSGLCKKGRFPAAKLLLSEM-LDLNLQPDAYMYATLVDGFIRN 498
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
E+ KA E+ E + KG G GY V+++G +C + A V M P
Sbjct: 499 NELDKATELFEVVMSKGIDPGVVGYNVMIKGLCKCGKMTDAVSYVNKMKIANHAPDEYTH 558
Query: 316 QKVVEG 321
V++G
Sbjct: 559 STVIDG 564
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 33/69 (47%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
Y P+ L++ C I + A KV + M S P++ +Y+I+IG S K A
Sbjct: 586 YKPNVVAYTSLINGFCKIADMSRAEKVFRAMQSFNLEPNVVTYTILIGGFSKTGKPEKAA 645
Query: 227 EMMKEMVLN 235
+ M++N
Sbjct: 646 SFFELMLMN 654
>gi|225423589|ref|XP_002275605.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Vitis vinifera]
Length = 644
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 8/214 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+++L R + S CVP L + L ++ +S +L ++ G+H + +
Sbjct: 293 LDKAVSLLDRMVASKCVPNDVTYGTLING-LVKQGRSVDGVHLLSSLEERGHHANEYAYS 351
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S L ++ EA + K M C P++ YS +I + K ++A E++ EMV N
Sbjct: 352 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV-N 410
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE---CRE 292
G P + KA+ + + + + C Y V++ G E RE
Sbjct: 411 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 470
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ ++G RG P + ++ GL G
Sbjct: 471 AMMMWTHMLG---RGLRPDVVAYSSMIHGLCNAG 501
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM+ G P T N L++ LC +V K++ M CVP+ +Y+ +I +
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 288
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + AV ++ MV + +P + L V ++ LE +G
Sbjct: 289 LKGKLDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 347
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G + + A M E+G P I V +++GL G+
Sbjct: 348 YAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGK 397
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 115/281 (40%), Gaps = 7/281 (2%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLR-PRSRPKIAYDYLLSYTLQSLHPLPLALA 121
+PN SF ++ ++D +E F + + P + L L + A+
Sbjct: 169 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 228
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L GC P +L + L ++ V ++ M G P+ T N +++ L
Sbjct: 229 LLDEMQIEGCFPSSVTFNVLING-LCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 287
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L +A +L M +++CVP+ +Y +I + ++ D V ++ + G
Sbjct: 288 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLE-ERGHHAN 346
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKT 299
+ + + L + +A+ + + + KGC Y +++G CRE L A +
Sbjct: 347 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL--CREGKLDEAKEI 404
Query: 300 VMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ M +G P +++G G + A V + A+
Sbjct: 405 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 445
>gi|242070015|ref|XP_002450284.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
gi|241936127|gb|EES09272.1| hypothetical protein SORBIDRAFT_05g003220 [Sorghum bicolor]
Length = 727
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 75/173 (43%), Gaps = 7/173 (4%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ D+ ++M S G PDC T L+ + C L EA K+L GM S P + +Y+I+
Sbjct: 541 KDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSDGLQPSVVTYTIL 600
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERK 271
I A ++M L++G+ P + + + A R R + E LER
Sbjct: 601 IHTCCRRGNLYSAYGWFRKM-LDVGIEPNEITYNVLIHALCRTGRTLLAYHHFHEMLERG 659
Query: 272 GCPIGFQGYEVVVEGCLECRE--YILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
P + Y ++++G CRE + A + M + G P + +G
Sbjct: 660 LAPNKYT-YTLLIDG--NCREGNWADAIRLYFEMHQNGIPPDYCTHNALFKGF 709
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 121 AILQRTLRSGCVPVPQIR------------LLLSSAWLERRCQSQSVAD---ILLEMKSI 165
AI+ L+S V Q++ L+ ++ L C++ ++ + +L +++
Sbjct: 354 AIIHGLLKSEQVEAAQLKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRA 413
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T N L+ C + L EA ++ + M C PD+ +Y+I++ R A
Sbjct: 414 GLAPTVLTYNTLIDGYCRLGGLEEARRLKEEMVEQGCFPDVCTYTILMNGSHKVRNLPMA 473
Query: 226 VEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
E EM L+ GL P ++ A L + KA ++ E + KG Y V++
Sbjct: 474 REFFDEM-LSKGLQPDCFAYNTRICAELILG-DTHKAFQLREVMMLKGIYPDTVTYNVII 531
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
+G + A M M G P
Sbjct: 532 DGLCKTGNLKDAKDLKMKMVSDGLQP 557
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 73/343 (21%), Positives = 124/343 (36%), Gaps = 48/343 (13%)
Query: 20 LQFSSLRSMS---SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF------- 69
L+F+ +R+M L T + A + ++ LLG A P ++
Sbjct: 370 LKFAEMRAMGLLPDLITYNSMLNGYCKAGNLKEALWLLGDLRRAGLAPTVLTYNTLIDGY 429
Query: 70 --LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
L + R+K +EM+E P + +L + LP+A L
Sbjct: 430 CRLGGLEEARRLK--EEMVEQ------GCFPDVCTYTILMNGSHKVRNLPMAREFFDEML 481
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADI--LLEMKSI----GYHPDCGTCNYLVSSL 181
G P A+ R C + D +++ + G +PD T N ++ L
Sbjct: 482 SKGLQPD-------CFAYNTRICAELILGDTHKAFQLREVMMLKGIYPDTVTYNVIIDGL 534
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C L +A + M S PD +Y+ +I A ++A +++ MV + GL P
Sbjct: 535 CKTGNLKDAKDLKMKMVSDGLQPDCITYTCLIHAHCERGLLSEARKLLNGMVSD-GLQPS 593
Query: 242 --QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYIL 295
++ R N ++ A RK +G + Y V++ +L
Sbjct: 594 VVTYTILIHTCCRRGN--LYSAYGWF----RKMLDVGIEPNEITYNVLIHALCRTGRTLL 647
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
A M ERG P +++G G W A +R F
Sbjct: 648 AYHHFHEMLERGLAPNKYTYTLLIDGNCREGNW--ADAIRLYF 688
>gi|224133034|ref|XP_002327945.1| predicted protein [Populus trichocarpa]
gi|222837354|gb|EEE75733.1| predicted protein [Populus trichocarpa]
Length = 1450
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 74/166 (44%), Gaps = 4/166 (2%)
Query: 150 CQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V D+ L EM+ G+ PD N ++ AID + ++ + + PD
Sbjct: 931 CRGKQVRDVEAMLSEMEEAGFKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDE 990
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
++Y+I+I + + + +M EM +GL P+ + A+ + + +A E+ E
Sbjct: 991 DTYNILIVMYCRDHRPKEGLVLMDEM-RTVGLEPKLDTYKSLVASFGKQQLVEQAEELFE 1049
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
L+ GC + Y ++++ + A + M + G P I
Sbjct: 1050 ELQSTGCKLDRSFYHIMMKIYRNSGSHSKAQRLFSMMKDEGVEPTI 1095
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + V DI EM IG+ D T N ++ Q A ++ + M S+ PD+
Sbjct: 410 REGNVEKVKDICEEMVKIGFGKDEMTYNTMIHMYGKQGQNDLALQLYRDMKSSGRNPDVI 469
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y+++I ++ K +A MM EM LN G+ P
Sbjct: 470 TYTVLIDSLGKTNKIEEAAGMMSEM-LNTGVKP 501
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 47/95 (49%), Gaps = 1/95 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ Q+ + +MKS G +PD T L+ SL +++ EAA ++ M + P L
Sbjct: 445 KQGQNDLALQLYRDMKSSGRNPDVITYTVLIDSLGKTNKIEEAAGMMSEMLNTGVKPTLR 504
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+YS +I + A K +A E + +L G P Q
Sbjct: 505 TYSALICGYAKAGKPVEAEETF-DCMLRSGTRPDQ 538
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
++L E++ G PD T N L+S+ L EA V M + C PDL +Y+ +I
Sbjct: 314 ELLTEVRRSGLRPDIITYNTLISACSRASNLEEAVNVFDDMVAHHCEPDLWTYNAMI 370
Score = 39.3 bits (90), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 45/228 (19%), Positives = 92/228 (40%), Gaps = 11/228 (4%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A A+ ++ G P V I LL + ++ R + V ++ E++ IG+ + +
Sbjct: 834 ARAVFNTMMKDGPSPTVDSINGLLQALIVDGRLEELYV--VVQELQDIGFKISKSSILLM 891
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + + E K+ GM +A P + Y ++ + ++ D M+ EM G
Sbjct: 892 LDAFARAGNIFEVKKIYHGMKAAGYFPSMHLYRVMAQLLCRGKQVRDVEAMLSEME-EAG 950
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P + V A + K ++ + ++ G Y +++ + CR++
Sbjct: 951 FKPDLSIWNSVLKMYVAIDDFRKTTQIYQRIKEDGLEPDEDTYNILI--VMYCRDHRPKE 1008
Query: 298 KTVM--GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
V+ M G P + + +V A G+ +L + F EL+S
Sbjct: 1009 GLVLMDEMRTVGLEPKLDTYKSLV---ASFGKQQLVEQAEELFEELQS 1053
>gi|357144169|ref|XP_003573197.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g43820-like [Brachypodium distachyon]
Length = 531
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/189 (23%), Positives = 76/189 (40%), Gaps = 1/189 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R Q + + +M GY P N L+ + + L K K M C P+
Sbjct: 285 LGRAGQPEEGLKVFEKMVHEGYGPTTTAYNALIFNFISSGDLDRCIKYYKDMVDKNCPPN 344
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I A+ AR+ DA++M +M G++P G + L A+ +
Sbjct: 345 SATYCKMIRALLRARRVADALQMFGDM-FTRGVLPNTGDITLFIEPLCTYGPPHAALMIY 403
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ GC I + Y++++ + + K M E G ++ + +V GL V
Sbjct: 404 RKSRKAGCTISLKAYKLLLARLARFGKSGIVLKIWEEMQESGHPSDKEIYEFIVNGLCNV 463
Query: 326 GEWKLATVV 334
G+ A V
Sbjct: 464 GKLDAAVSV 472
>gi|147784775|emb|CAN64008.1| hypothetical protein VITISV_000279 [Vitis vinifera]
Length = 549
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/213 (21%), Positives = 96/213 (45%), Gaps = 12/213 (5%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
+ +++E++ F L + K + ++ AL++ ++ L + +P +
Sbjct: 222 NVGILNELIAQFAKL---GKGKAGLEVFNAFGEYGRSIFDWALSVCEKMLNASSLPDSE- 277
Query: 138 RLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE-AAKV 193
++ +W C+ + V D + L K +P T N+L++SLC D + A ++
Sbjct: 278 KVWNIISWF---CKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIASLCREDGTISMAVEM 334
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L S EC ++ Y+ VI + ++ + A ++ +M+ G P + V L
Sbjct: 335 LDDFSGEECKYAIKPYTAVIRGLCRSKDVDGAKRLLLKMI-EAGPPPGNAVFNFVINGLS 393
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
EM +A++M++ +E +G Y V++ G
Sbjct: 394 KAGEMEEAMKMMKLMETRGLKPDVYTYSVIMSG 426
Score = 40.8 bits (94), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 57/138 (41%)
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A V + M +A +PD E +I RK DA + P+ + +A
Sbjct: 260 ALSVCEKMLNASSLPDSEKVWNIISWFCKGRKVKDAYLVYLLAKEKNKYPPKTTVNFLIA 319
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+ R + + AVEM++ + C + Y V+ G ++ A + ++ M E G
Sbjct: 320 SLCREDGTISMAVEMLDDFSGEECKYAIKPYTAVIRGLCRSKDVDGAKRLLLKMIEAGPP 379
Query: 310 PYIKVRQKVVEGLAGVGE 327
P V V+ GL+ GE
Sbjct: 380 PGNAVFNFVINGLSKAGE 397
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 75/165 (45%), Gaps = 9/165 (5%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V +LL+M G P N++++ L ++ EA K++K M + PD+
Sbjct: 358 CRSKDVDGAKRLLLKMIEAGPPPGNAVFNFVINGLSKAGEMEEAMKMMKLMETRGLKPDV 417
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMG-LMP-RQGMVIKVAAALRANREMWKAVEM 264
+YS+++ + +A ++ E N L P +I+ L + KAVE+
Sbjct: 418 YTYSVIMSGYAHGGMMEEACRVLSEAKRNHSKLSPVTYHTLIRGYCKL---EQFDKAVEL 474
Query: 265 IEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGF 308
+ ++ G Y +++ CL+ ++ A K + M + G
Sbjct: 475 LGEMKEHGVQPNTDEYNKLIQSLCLKALDWQTAEKLLEEMKQNGL 519
>gi|359491317|ref|XP_003634263.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g61400-like [Vitis vinifera]
Length = 665
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 52/231 (22%), Positives = 93/231 (40%), Gaps = 20/231 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVADILLEMKSIGYHPDCGTCN 175
AL + Q L G +P ++ ++ C++ S L++M S G P+ N
Sbjct: 282 ALELYQEMLGDGLLP----NVVTFGILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYN 337
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C L EA + + E +PD+ +YSI+I + + +A +++EM
Sbjct: 338 CLIDGYCKAGNLSEALSLHSEIEKHEILPDVFTYSILIKGLCGVDRMEEADGLLQEMK-K 396
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G +P + M KA+E+ + KG + +++G Y
Sbjct: 397 KGFLPNAVTYNTLIDGYCKEGNMEKAIEVCSQMTEKGIEPNIITFSTLIDG------YCK 450
Query: 296 AGK--TVMG----MTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
AGK MG M +G +P + +++G G K A + + E
Sbjct: 451 AGKMEAAMGLYTEMVIKGLLPDVVAYTALIDGHFKDGNTKEAFRLHKEMQE 501
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/167 (19%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M + G P+ T L+ C ++A ++ M + P + Y+I+I +
Sbjct: 183 DMVARGASPNVVTYGTLIDGCCRQGDFLKAFRLFDEMIEKKIFPTVVIYTILIRGLCGES 242
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A M + M N G++P + + KA+E+ + + G +
Sbjct: 243 RISEAESMFRTM-RNSGMLPNLYTYNTMMDGYCKIAHVKKALELYQEMLGDGLLPNVVTF 301
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++++G + E + A K ++ M G +P I V +++G G
Sbjct: 302 GILIDGLCKTDEMVSARKFLIDMASFGVVPNIFVYNCLIDGYCKAGN 348
>gi|242086791|ref|XP_002439228.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
gi|241944513|gb|EES17658.1| hypothetical protein SORBIDRAFT_09g002630 [Sorghum bicolor]
Length = 653
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/282 (22%), Positives = 118/282 (41%), Gaps = 27/282 (9%)
Query: 52 ELLGSFEEACQN-------PNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSR 97
++G+ C N PN F++ + QNHR+ K++DEM P
Sbjct: 148 NMVGAVALVCGNMRKDGVQPNVFTYNLLVRALCQNHRVGAARKMLDEMATKGCP-----P 202
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
+ Y ++S L +L + A +L S PV + A L R + Q V
Sbjct: 203 DDVTYGTIVS-ALCTLGRVDEATEVL-----SAAPPVAASYNAVILA-LCREFRMQEVFA 255
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M G P+ T +V++ C +L A +L M C P++ +++ ++G +
Sbjct: 256 VVGDMVGRGLQPNVITYTTIVNAFCKAGELRMACAILARMVITGCTPNVATFTALVGGLF 315
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ +DA++M K MV G P + L + ++ A ++ +E+ GC
Sbjct: 316 NDGRVHDALDMWKCMVAE-GWAPSTVSYNVLIRGLCSVGDLKGASSVLNDMEQHGCFPNA 374
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+ Y +++G + + A MT G P + V +V
Sbjct: 375 RTYSTLIDGFSKAGDLDGAISIWNDMTRSGCKPNVVVYTNMV 416
>gi|225465635|ref|XP_002270253.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At5g08310, mitochondrial [Vitis vinifera]
gi|296085293|emb|CBI29025.3| unnamed protein product [Vitis vinifera]
Length = 854
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 86 LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAW 145
+ F ++ RP ++ L + L LAL++ + +R GC + +LL +
Sbjct: 443 VNKFFMVKEMVRPDTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGC----KQNVLLYNNL 498
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+++ S + + +L EMK G+ P T N + LC + + A +++ M
Sbjct: 499 IDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGH 558
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P ++ Y++++ + +++ +A + EMV G +P ++ +AA+ ++ KAV
Sbjct: 559 EPWIKHYTLLVKQLCKRKRSAEACNFLAEMV-REGFLPD---IVAYSAAIDGFVKI-KAV 613
Query: 263 EMIEFLERKGCPIGF----QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+ + R C G+ Y ++ G + + A + M +G +P + +
Sbjct: 614 DQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLL 673
Query: 319 VEGLAGVGE 327
++G G+
Sbjct: 674 IDGWCKNGD 682
>gi|413936133|gb|AFW70684.1| hypothetical protein ZEAMMB73_229858 [Zea mays]
Length = 375
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 107/253 (42%), Gaps = 8/253 (3%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPK-IAYDYLLSYTLQSLHPL 116
E C+ PN ++ R +D+ E L RS +P + Y+ +L S+
Sbjct: 4 EGCE-PNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLK-GFCSIERW 61
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
A IL + C P + L ++ L R+ Q V L +M G + T N
Sbjct: 62 VDANEILDEVVSENCPP-NEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYNA 120
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ LC + A ++L M S C PD+ +Y+ V+ + +A + DA E+M +M N
Sbjct: 121 IIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDAEELMIKMSQND 180
Query: 237 GLMPRQGMVIKVAAALRANREM-WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L R + + + +A+E+ + + KGC Y ++ G ++ +
Sbjct: 181 RL--RDNSTFNTIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQ 238
Query: 296 AGKTVMGMTERGF 308
A + + M +GF
Sbjct: 239 ALELLNEMANKGF 251
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 1/170 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M++ G P+ T N ++ ++C + +A ++L + S C P+ +Y+ V+ + +
Sbjct: 1 MRAEGCEPNNVTYNVIIDAMCREGDVDQARELLNSLPSRSCKPNTVNYNTVLKGFCSIER 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
DA E++ E V++ P + + L + K +E + + GC Y
Sbjct: 61 WVDANEILDE-VVSENCPPNEATLNVTINTLCRKGLLQKVTRYLEKMSKHGCTTNVVTYN 119
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G E A + + M G P I V++GL W+ A
Sbjct: 120 AIIGGLCEQGNVDSALELLSNMQSFGCKPDIVTYNTVLKGLCSADRWEDA 169
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/223 (22%), Positives = 94/223 (42%), Gaps = 9/223 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
AL +L GC P ++ + L+ C + + +++++M D T N
Sbjct: 134 ALELLSNMQSFGCKP----DIVTYNTVLKGLCSADRWEDAEELMIKMSQNDRLRDNSTFN 189
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++S C +++A +V K M C P+ +YS +IG + A K A+E++ EM N
Sbjct: 190 TIISFWCQKGLILQALEVFKQMPEKGCNPNSTTYSTIIGGLVKASKMEQALELLNEMA-N 248
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G + M + + +L ++ + V+++ L+ G Y V+ G +
Sbjct: 249 KGFNTDK-MYLVLTKSLNKEDKIEEVVQVVHKLQDSGISPQTVLYNTVLLGLCRNGKTNY 307
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
A + M G +P ++EGL G K A + R
Sbjct: 308 AIDVLADMVSCGCMPDESTYIILIEGLFYEGYLKEARELLSRL 350
>gi|356560499|ref|XP_003548529.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19440,
chloroplastic-like [Glycine max]
Length = 836
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/205 (22%), Positives = 88/205 (42%), Gaps = 3/205 (1%)
Query: 136 QIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
++ LLL + +C S+ DI + G P TCN L+SSL ++L ++ +V
Sbjct: 185 ELDLLLHILCSQFKCLGSRCAFDIFVMFSKRGVFPCLKTCNLLLSSLVKANELHKSYEVF 244
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
++ PD+ +++ I A + DAV++ +M +G+ P V L
Sbjct: 245 D-LACQGVAPDVFTFTTAINAFCKGGRVGDAVDLFCKME-GLGVFPNVVTYNNVIDGLFK 302
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A+ + + R Y V++ G ++ + A + ++ M GF P V
Sbjct: 303 SGRFEEALRFKDRMVRSKVNPSVVTYGVLISGLMKLEMFEEANEVLVEMYSMGFAPNEVV 362
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFA 339
+++G G+ A VR A
Sbjct: 363 FNALIDGYCRKGDMGEALRVRDEMA 387
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 37/144 (25%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
Y++L+ L + + +L G VP LL LE C++ + D +
Sbjct: 573 TYNFLMK-GLADMGKIDDVHRLLHEAKEYGFVPNVYTYALL----LEGYCKADRIEDAVK 627
Query: 161 EMKSIGYHP---DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
K++ Y N L+++ C I + EA K+ M S +P +YS +I M
Sbjct: 628 FFKNLDYEKVELSSVVYNILIAAYCRIGNVTEAFKLRDAMKSRGILPTCATYSSLIHGMC 687
Query: 218 TARKTNDAVEMMKEMVLNMGLMPR 241
+ ++A E+ +EM N GL+P
Sbjct: 688 CIGRVDEAKEIFEEM-RNEGLLPN 710
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 59/131 (45%), Gaps = 1/131 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MKS G P C T + L+ +C I ++ EA ++ + M + +P++ Y+ +IG +
Sbjct: 667 MKSRGILPTCATYSSLIHGMCCIGRVDEAKEIFEEMRNEGLLPNVFCYTALIGGHCKLGQ 726
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ ++ EM N G+ P + + M +A E++ + R G Y
Sbjct: 727 MDIVGSILLEMSSN-GIRPNKITYTIMIDGYCKLGNMKEARELLNEMIRNGIAPDTVTYN 785
Query: 282 VVVEGCLECRE 292
+ +G + RE
Sbjct: 786 ALQKGYCKERE 796
>gi|356530296|ref|XP_003533718.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 830
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/215 (25%), Positives = 83/215 (38%), Gaps = 38/215 (17%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM+ PD T N L ++ L E V+ M+S +P+ +Y+ VI A
Sbjct: 344 ILKEMEDNNCPPDSITYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYG 403
Query: 218 TARKTNDAVEMMKEM--------------VLNM-GLMPRQGMVIKVAAALR-----ANRE 257
A + +DA+ + +M VL M G R VIKV ++ NR
Sbjct: 404 KAGREDDALRLFSKMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRA 463
Query: 258 MWKAVEMI------------EFLERKGCPIGFQ----GYEVVVEGCLECREYILAGKTVM 301
W + + E K C GF+ + ++ C + + K
Sbjct: 464 TWNTMLAVCSEEGKHNYVNKVLREMKNC--GFEPDKDTFNTLISSYARCGSEVDSAKMYG 521
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
M + GF P + ++ LA G+WK A V Q
Sbjct: 522 EMVKSGFTPCVTTYNALLNALAHRGDWKAAESVIQ 556
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ V +L EMK+ G+ PD T N L+SS V++AK+ M + P + +Y+
Sbjct: 477 KHNYVNKVLREMKNCGFEPDKDTFNTLISSYARCGSEVDSAKMYGEMVKSGFTPCVTTYN 536
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
++ A++ R A E + + + G P +
Sbjct: 537 ALLNALA-HRGDWKAAESVIQDMQTKGFKPNE 567
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 10/148 (6%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L+ D+ +A +VLKG+ ++ PD+ SY+ VI +A
Sbjct: 667 GLQPNLFTYNCLMDLYVREDECWKAEEVLKGIQNSVPEPDVVSYNTVIKGFCRKGLMQEA 726
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ ++ EM G+ P + +A E+I F+ C Y+++V+
Sbjct: 727 IRVLSEMTTK-GIQPTIVTYNTFLSGYAGMELFDEANEVIRFMIEHNCRPSELTYKILVD 785
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIK 313
G Y AGK M F+ IK
Sbjct: 786 G------YCKAGKHEEAMD---FVTKIK 804
>gi|255542424|ref|XP_002512275.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223548236|gb|EEF49727.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 532
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 158 ILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
I L +++ +H P+ T N L+ LC + ++ + ++ M S C+PD+ +Y+ +I
Sbjct: 183 IFLFKENLAFHSPPNTWTFNILIRGLCRVGEVEKGFELFNAMQSFGCLPDVVTYNTLISG 242
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ A + + A +++KE+ P + + R ++ A + E + R G
Sbjct: 243 LCKANELDRACDLLKEVQSRNDCSPDVMTYTSIISGFRKLGKLEAASVLFEEMIRSGIEP 302
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ V+++G + + A M IP + +++G G+ +L
Sbjct: 303 TVVTFNVLIDGFGKIGNMVAAEAMHEKMASYSCIPDVVTFTSLIDGYCRTGDIRLG 358
>gi|449508997|ref|XP_004163464.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 36/222 (16%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++L+ + GCVP + L A L ++ Q +L EM +G PD T N ++
Sbjct: 237 ACSLLRDMTKHGCVPNSIVYQTLIHA-LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVI 295
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV------IGAMSTARKT-------NDA 225
LC ++++ +A K++ M PD +Y + IG ++ ARK N+A
Sbjct: 296 HGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNA 355
Query: 226 V------------------EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + E ++N G P + L + A +++
Sbjct: 356 ILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNE 415
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERG 307
+ R+GC Y ++V G C+ +L AG + M+ RG
Sbjct: 416 MSRRGCEPNVITYAILVNGL--CKAGLLEEAGLVLHEMSARG 455
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q ++ +M S G P T ++ +LC +++ A +L+ M+ CVP+ Y +
Sbjct: 200 QVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTL 259
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A+S + ++A+++++EM + MG MP V L ++ A ++++ + +G
Sbjct: 260 IHALSQKNQVSEALKLLEEMFV-MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG 318
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ + ++L EM + G PD T N L+ LC +D++ EA ++ M V +
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV 531
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+Y+ +I A+ A+ ++ +M+ + + G++ A + K +E+
Sbjct: 532 TYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLI----KAFCKVGNIEKGLEL 587
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
E + G +++ G + + A + + RGF+P I V+ GL
Sbjct: 588 YEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCK 647
Query: 325 VGEWKLATVVRQR 337
VG K A + R
Sbjct: 648 VGRIKEALNLFDR 660
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
K++D ML LR + Y +LL + L + L A IL + +P P +
Sbjct: 309 KLVDRML-----LRGFYPDNMTYGFLL-HGLCRIGKLNEARKILIK------IPCPNNAI 356
Query: 140 L--LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L L + ++ ++ + + M + G+ PD T N L+ LC L A ++ M
Sbjct: 357 LNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM 416
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
S C P++ +Y+I++ + A +A ++ EM GL + + AL +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR-GLTINSVIYNCLICALCRKEK 475
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ A+ ++ + KGC Y ++ G
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYG 504
>gi|356540375|ref|XP_003538665.1| PREDICTED: pentatricopeptide repeat-containing protein At3g18110,
chloroplastic-like [Glycine max]
Length = 1476
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/166 (22%), Positives = 70/166 (42%), Gaps = 4/166 (2%)
Query: 150 CQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V D+ L EM+ G+ PD CN ++ I+ + + + A PD
Sbjct: 925 CKCKRVRDVETMLCEMEEAGFQPDLQICNSILKLYLGIEDFKSMGIIYQKIQDASLKPDE 984
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
E+Y+ +I R+ + +M +M ++GL P+ + A R +A E+ E
Sbjct: 985 ETYNTLIIMYCRDRRPEEGFSLMNKM-RSLGLEPKLDTYRSLITAFNKQRMYEQAEELFE 1043
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
L G + Y ++++ ++ A + M E G P I
Sbjct: 1044 ELRSNGYKLDRAFYHLMMKTYRTSGDHRKAENLLAIMKESGIEPTI 1089
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 79/196 (40%), Gaps = 1/196 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
R ++ V DI EM G+ D T N ++ + +A ++ + M S+ PD
Sbjct: 401 FSREGNTEKVRDICEEMVKRGFGQDEMTYNTIIHMYGKQGRHDQAMQIYRDMKSSGRNPD 460
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y+++I ++ A K +A +M EM L+ G+ P + A + +A E
Sbjct: 461 AVTYTVLIDSLGKASKVEEAANVMSEM-LDAGVKPTLHTYSALICAYAKAGKREEAEETF 519
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ R G Y V+++ L E A M GF P + + ++ L
Sbjct: 520 NCMRRSGIKPDRLAYSVMLDFFLRFNEMKKAMGLYHEMIREGFTPDNGLYEVMMHALVRE 579
Query: 326 GEWKLATVVRQRFAEL 341
W + + + EL
Sbjct: 580 NMWDVVDRIIRDMEEL 595
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 49/112 (43%), Gaps = 2/112 (1%)
Query: 130 GCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
GCVP + L+++ + +L E++ G PD T N L+S+ L
Sbjct: 279 GCVPDLVSFNTLINARMKSGAMEPNLALQLLNEVRRSGIRPDIITYNTLISACSRESNLE 338
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
EA V M S C PDL +Y+ +I + A E+ KE+ + G P
Sbjct: 339 EAVAVFSDMESHRCQPDLWTYNAMISVYGRCARARKAEELFKELE-SKGFFP 389
>gi|449443698|ref|XP_004139614.1| PREDICTED: pentatricopeptide repeat-containing protein At5g64320,
mitochondrial-like [Cucumis sativus]
Length = 732
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 92/222 (41%), Gaps = 36/222 (16%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++L+ + GCVP + L A L ++ Q +L EM +G PD T N ++
Sbjct: 237 ACSLLRDMTKHGCVPNSIVYQTLIHA-LSQKNQVSEALKLLEEMFVMGCMPDVQTFNDVI 295
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV------IGAMSTARKT-------NDA 225
LC ++++ +A K++ M PD +Y + IG ++ ARK N+A
Sbjct: 296 HGLCKVNKIHDATKLVDRMLLRGFYPDNMTYGFLLHGLCRIGKLNEARKILIKIPCPNNA 355
Query: 226 V------------------EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + E ++N G P + L + A +++
Sbjct: 356 ILNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNE 415
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERG 307
+ R+GC Y ++V G C+ +L AG + M+ RG
Sbjct: 416 MSRRGCEPNVITYAILVNGL--CKAGLLEEAGLVLHEMSARG 455
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/120 (24%), Positives = 61/120 (50%), Gaps = 1/120 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q ++ +M S G P T ++ +LC +++ A +L+ M+ CVP+ Y +
Sbjct: 200 QVATNVFYDMLSKGVSPTVFTFGIVMKALCMFNEVDSACSLLRDMTKHGCVPNSIVYQTL 259
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A+S + ++A+++++EM + MG MP V L ++ A ++++ + +G
Sbjct: 260 IHALSQKNQVSEALKLLEEMFV-MGCMPDVQTFNDVIHGLCKVNKIHDATKLVDRMLLRG 318
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 43/193 (22%), Positives = 82/193 (42%), Gaps = 7/193 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ + ++L EM + G PD T N L+ LC +D++ EA ++ M V +
Sbjct: 472 RKEKVHVALNLLSEMCTKGCKPDLFTYNSLIYGLCKVDRIDEAFRLFHNMLLDGAVANNV 531
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+Y+ +I A+ A+ ++ +M+ + + G++ A + K +E+
Sbjct: 532 TYNTLIHALLRRGAFQKALTLVNDMLFRGCTLDKITYNGLI----KAFCKVGNIEKGLEL 587
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
E + G +++ G + + A + + RGF+P I V+ GL
Sbjct: 588 YEQMIMDGLGADTISCNIMINGLCKVGKVDNAFEFLRDAINRGFVPDIVTYNSVLNGLCK 647
Query: 325 VGEWKLATVVRQR 337
VG K A + R
Sbjct: 648 VGRIKEALNLFDR 660
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 49/209 (23%), Positives = 90/209 (43%), Gaps = 15/209 (7%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
K++D ML LR + Y +LL + L + L A IL + +P P +
Sbjct: 309 KLVDRML-----LRGFYPDNMTYGFLL-HGLCRIGKLNEARKILIK------IPCPNNAI 356
Query: 140 L--LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L L + ++ ++ + + M + G+ PD T N L+ LC L A ++ M
Sbjct: 357 LNTLINGYVMSGQLKEAQSFLNETMINFGFQPDIFTYNILMHGLCKEGSLSFARDLVNEM 416
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
S C P++ +Y+I++ + A +A ++ EM GL + + AL +
Sbjct: 417 SRRGCEPNVITYAILVNGLCKAGLLEEAGLVLHEMSAR-GLTINSVIYNCLICALCRKEK 475
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ A+ ++ + KGC Y ++ G
Sbjct: 476 VHVALNLLSEMCTKGCKPDLFTYNSLIYG 504
>gi|242074342|ref|XP_002447107.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
gi|241938290|gb|EES11435.1| hypothetical protein SORBIDRAFT_06g028710 [Sorghum bicolor]
Length = 363
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/106 (27%), Positives = 55/106 (51%), Gaps = 4/106 (3%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ + V+ D+ M S G +P+ GT L+ L ++ + EA ++ MS+ P
Sbjct: 258 CREERVSEAFDLFKSMTSEGCYPNSGTYQVLLDGLISLGKFFEAKSLVSTMSTEGVRPSF 317
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+SY ++I + + +DA ++K+MV G +PR G K+ ++
Sbjct: 318 QSYKLLIDGLCSEDCVDDAHLVLKQMV-GQGFVPRMGTWTKLLTSI 362
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 73/172 (42%), Gaps = 1/172 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + V +I +G D + N LV LC + EA +L M C P++ +YS
Sbjct: 157 QYEVVHEIYSSAPRLGVTLDTCSFNILVKGLCQCSKFDEAISLLHEMPKQGCQPNVATYS 216
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+ + + A E+ + M I ++ R R + +A ++ + +
Sbjct: 217 TFMHFLCQRSLVDKAFELFERMRKQDIAADTVVYNILISGLCREER-VSEAFDLFKSMTS 275
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+GC Y+V+++G + ++ A V M+ G P + + +++GL
Sbjct: 276 EGCYPNSGTYQVLLDGLISLGKFFEAKSLVSTMSTEGVRPSFQSYKLLIDGL 327
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 55/118 (46%), Gaps = 9/118 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE----MKSIGYHPDCGTC 174
A+++L + GC P + S ++ CQ +S+ D E M+ D
Sbjct: 196 AISLLHEMPKQGCQP----NVATYSTFMHFLCQ-RSLVDKAFELFERMRKQDIAADTVVY 250
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+S LC +++ EA + K M+S C P+ +Y +++ + + K +A ++ M
Sbjct: 251 NILISGLCREERVSEAFDLFKSMTSEGCYPNSGTYQVLLDGLISLGKFFEAKSLVSTM 308
>gi|223635627|sp|Q9SZ20.2|PP339_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g26800
Length = 514
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 139 LLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+++ V ++L MK G P+ T + L++ LC +L +A + L
Sbjct: 193 VVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLH 252
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S + P++ ++S +I A + K + V+ + +M++ M + P + L +
Sbjct: 253 EMDSKKINPNVITFSALIDAYAKRGKLS-KVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 311
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC------------------------- 290
+ +A++M++ + KGC Y + G +
Sbjct: 312 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 371
Query: 291 ----REYILAGKT-----VMG-MTERGFIPYIKVRQKVVEGLAGVGE 327
+ Y AGK V G MT G IP I+ V+ GL GE
Sbjct: 372 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGE 418
>gi|218202055|gb|EEC84482.1| hypothetical protein OsI_31142 [Oryza sativa Indica Group]
Length = 586
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
KS G P+ T + + CA + A +VL M + P++ +Y+ VI + +
Sbjct: 294 KSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEI 353
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
N+A ++ E + G P + A +E+ KA+ +I ++++ CP Y +
Sbjct: 354 NEAYNILDE-ITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNM 412
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+++ + + A + GM +RGF P ++ GLA
Sbjct: 413 LLKMLIGVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLA 453
Score = 44.3 bits (103), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 145 WLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
+L C S+ V L + + H P+ T N ++ LC + ++ EA +L +++
Sbjct: 308 FLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQG 367
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
PD+ SY+ ++ A ++ N A+ ++ M + R + + + R A
Sbjct: 368 EKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLIGVGR-FDTA 426
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+E+ + +E++G G Y V++ G
Sbjct: 427 IEVWDGMEKRGFHPGAATYAVMIHG 451
>gi|115465257|ref|NP_001056228.1| Os05g0548600 [Oryza sativa Japonica Group]
gi|113579779|dbj|BAF18142.1| Os05g0548600 [Oryza sativa Japonica Group]
gi|222632454|gb|EEE64586.1| hypothetical protein OsJ_19438 [Oryza sativa Japonica Group]
Length = 440
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/216 (24%), Positives = 88/216 (40%), Gaps = 34/216 (15%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM S G P T N LV S C +L A +++ M+ P+ +Y++++ +
Sbjct: 186 VLDEMLSRGVRPTVVTFNTLVGSACREGELGAAERLIDEMARRGVAPNAATYALLMRGLC 245
Query: 218 TARKTNDAVEMMKEM--------VLNMGLM----PRQGMVIKVAAALRANR--------- 256
A + DA ++M +M V+N G++ R G V L A R
Sbjct: 246 DADRHADAEKLMFDMEYRGCQADVVNYGVLMSSRARHGDADGVRELLSAMRKRKLKPDDA 305
Query: 257 ----------EMWKAVEMIEFL---ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303
+ +A E L + +G G Y V+V+GC R++ L + M
Sbjct: 306 SYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAATYRVLVDGCCRARDFDLGLRVFNAM 365
Query: 304 TERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
G P + + + GL G+ + A V ++ A
Sbjct: 366 MASGHCPQARTFRHLARGLGEDGKAEEAFFVLEQMA 401
Score = 38.1 bits (87), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 30/137 (21%), Positives = 59/137 (43%), Gaps = 1/137 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + V ++L M+ PD + N L+ LC + EA + L M VP
Sbjct: 281 RHGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAA 340
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y +++ AR + + + M+ + G P+ +A L + + +A ++E
Sbjct: 341 TYRVLVDGCCRARDFDLGLRVFNAMMAS-GHCPQARTFRHLARGLGEDGKAEEAFFVLEQ 399
Query: 268 LERKGCPIGFQGYEVVV 284
+ R+ + G++ VV
Sbjct: 400 MARREMSLDADGWQAVV 416
>gi|359489475|ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
vinifera]
Length = 1105
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/204 (23%), Positives = 81/204 (39%), Gaps = 15/204 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L+ P+P+ L + R + D+ G PD + N L+
Sbjct: 132 ALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILM 191
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S+ C L A + M + PD+ESY I++ + + N AV+++++M LN G
Sbjct: 192 SAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDM-LNKGY 250
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG----------CL 288
+P +V + L +A +E + KG + F + ++ G C
Sbjct: 251 VPDATLV----SGLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEACE 306
Query: 289 ECREYILAGKTVMGMTERGFIPYI 312
RE + G+ T IP I
Sbjct: 307 VLREMLRHGEAPHTETWVAIIPRI 330
>gi|296089012|emb|CBI38715.3| unnamed protein product [Vitis vinifera]
Length = 429
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/212 (22%), Positives = 85/212 (40%), Gaps = 15/212 (7%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L+ P+P+ L + R + D+ G PD + N L+
Sbjct: 146 ALKTFHSMLQFHSKPLPKHLNRLLQLLVSHRNYIRPAFDLFKSAHRYGVSPDTKSYNILM 205
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S+ C L A + M + PD+ESY I++ + + N AV+++++M LN G
Sbjct: 206 SAFCFNGDLSIAYTLFNQMFKRDVAPDVESYRILMQGLCRKSQVNRAVDLLEDM-LNKGY 264
Query: 239 MPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGCPIGFQGYEVVVEG----------C 287
+P + ++ ++ +A +E + KG + F + ++ G C
Sbjct: 265 VPD---ALSYTTFGLCDQGLYDEAKNYVEEMLSKGFSLHFSVFHALINGFCNVGKLEEAC 321
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
RE + G+ T IP I K+V
Sbjct: 322 EVLREMLRHGEAPHTETWVAIIPRICEVDKLV 353
>gi|32489931|emb|CAE05523.1| OSJNBa0038P21.16 [Oryza sativa Japonica Group]
gi|38347491|emb|CAE05839.2| OSJNBa0091C07.1 [Oryza sativa Japonica Group]
Length = 844
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR P + Y +L + +H L LAI+ R L++G P L+ + +
Sbjct: 169 PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYG--FVKDGEV 226
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ LEM G P CN ++ LC + ++ +A +++ M + PDL +YS++
Sbjct: 227 DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLI 286
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
I + ++ + A ++++MV
Sbjct: 287 IDGLCKSKAMDKAERVLEQMV 307
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
+P P ++ S+ + C+ VA DI+ M G P+ T N L+ C + +
Sbjct: 523 IPPPGVKYF--SSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 580
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L M+S P+ Y ++ + +DA+ + ++M L+ G+ P + +
Sbjct: 581 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM-LHKGVKPTSVLYSII 639
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L R A +M + G + Y VV+ G CR
Sbjct: 640 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGL--CRN 681
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
V +I M + G P+ N L+++ + +A + + M + +PD +++ VI
Sbjct: 405 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 464
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKG 272
++ + +DA+ MV ++G+ P + + + + E+ KA E+I E + +
Sbjct: 465 SSLCRIGRLDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 523
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKL 330
P G + + ++ C E R + GK +M M + G P + ++EG VG +
Sbjct: 524 PPPGVKYFSSIINNLCKEGR--VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 581
Query: 331 ATVVRQRFAEL 341
A + A +
Sbjct: 582 AFALLDAMASI 592
Score = 40.8 bits (94), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +I+Q+ + SG P L S ++ C+S+++ +L +M G P+ T N
Sbjct: 264 AESIVQKMVDSGIAP----DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYN 319
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ E+ +V K MSS +P +++ + I A+ +TN+A + MVL
Sbjct: 320 SLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVL 378
>gi|125553201|gb|EAY98910.1| hypothetical protein OsI_20865 [Oryza sativa Indica Group]
Length = 440
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 95/227 (41%), Gaps = 14/227 (6%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L L G P V L+ SA R + + ++ EM G P+ T L
Sbjct: 183 ARGVLDEMLSRGVRPTVVTFNTLVGSAC--REGELGAAERLIDEMARRGVAPNAATYALL 240
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN-DAVEMMKEMVLNM 236
+ LC D+ +A K++ M C D+ +Y +++ S AR+ + D V + +
Sbjct: 241 MRGLCDADRHADAEKLMFDMEYRGCQADVVNYGVLMS--SRARRGDADGVRELLSAMRKR 298
Query: 237 GLMPRQG----MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L P ++ + A RA+ +EM + +G G Y V+V+GC R+
Sbjct: 299 KLKPDDASYNILIRCLCDAGRADEAHRALLEM----QLRGTVPGAATYRVLVDGCCRARD 354
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339
+ L + M G P + + + GL G+ + A V ++ A
Sbjct: 355 FDLGLRVFNAMMASGHCPQARTFRHLARGLGEDGKAEEAFFVLEQMA 401
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 1/137 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR + V ++L M+ PD + N L+ LC + EA + L M VP
Sbjct: 281 RRGDADGVRELLSAMRKRKLKPDDASYNILIRCLCDAGRADEAHRALLEMQLRGTVPGAA 340
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y +++ AR + + + M+ + G P+ +A L + + +A ++E
Sbjct: 341 TYRVLVDGCCRARDFDLGLRVFNAMMAS-GHCPQARTFRHLARGLGEDGKAEEAFFVLEQ 399
Query: 268 LERKGCPIGFQGYEVVV 284
+ R+ + G++ VV
Sbjct: 400 MARREMSLDADGWQAVV 416
>gi|115469638|ref|NP_001058418.1| Os06g0690900 [Oryza sativa Japonica Group]
gi|52076717|dbj|BAD45630.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|53793285|dbj|BAD54507.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|113596458|dbj|BAF20332.1| Os06g0690900 [Oryza sativa Japonica Group]
Length = 991
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I + ++GC P L +++ ++ ++L G+ P T L+
Sbjct: 342 ALKIKELMEKNGCHPDDWTYNTLIYGLCDQK--TEEAEELLNNAVKEGFTPTVVTFTNLI 399
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C ++ +A ++ M S++C DL+ + +I ++ + +A E++ E+ N GL
Sbjct: 400 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN-GL 458
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + + ++ A+E+++ +ER GC Y ++ G ++ ++ A
Sbjct: 459 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 518
Query: 299 TVMGMTERGFIPYIKVRQKVVEG 321
+ M + G IP + +++G
Sbjct: 519 LLTKMQKDGIIPNVITYTTLLQG 541
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 15/192 (7%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ D++L+M+ G PD T N L+ + + A LK M A C P+ +Y ++
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLL 780
Query: 213 I-----GAMSTARKTN----------DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ G ++ R + D + E ++ GL P + A
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A +++ + KG Y ++++ C + + + A V M+E GF P ++ +
Sbjct: 841 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 900
Query: 318 VVEGLAGVGEWK 329
+V GL G+++
Sbjct: 901 LVVGLCNEGDFE 912
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE----MKSIGYHPDC 171
L A +L +G VP ++ ++ ++ C+S V DI LE M+ G P+
Sbjct: 443 LKEAKELLNEISANGLVP----NVITYTSIIDGYCKSGKV-DIALEVLKMMERDGCQPNA 497
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L+ L +L +A +L M +P++ +Y+ ++ ++A + E
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF-E 556
Query: 232 MVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ GL P + + AL +A R A E F+ RKG + Y +++G +
Sbjct: 557 MMEQNGLKPDEHAYAVLTDALCKAGR----AEEAYSFIVRKGVALTKVYYTTLIDGFSKA 612
Query: 291 REYILAGKTVMGMTERGFIP 310
A + M + G P
Sbjct: 613 GNTDFAATLIERMIDEGCTP 632
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ A ++ M G PD T + L+ +LC +L EA +L MS + +Y+
Sbjct: 614 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 673
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I M K + A M EM + G P + + A ++I +ER
Sbjct: 674 ILIDEMLREGKHDHAKRMYNEMT-SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732
Query: 271 KGCPIGFQGYEVVVEGC 287
+G Y ++++GC
Sbjct: 733 EGVAPDVVTYNILIDGC 749
>gi|222628664|gb|EEE60796.1| hypothetical protein OsJ_14385 [Oryza sativa Japonica Group]
Length = 808
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR P + Y +L + +H L LAI+ R L++G P L+ + +
Sbjct: 93 PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYG--FVKDGEV 150
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ LEM G P CN ++ LC + ++ +A +++ M + PDL +YS++
Sbjct: 151 DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLI 210
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
I + ++ + A ++++MV
Sbjct: 211 IDGLCKSKAMDKAERVLEQMV 231
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
+P P ++ S+ + C+ VA DI+ M G P+ T N L+ C + +
Sbjct: 447 IPPPGVKYF--SSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 504
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L M+S P+ Y ++ + +DA+ + ++M L+ G+ P + +
Sbjct: 505 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM-LHKGVKPTSVLYSII 563
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L R A +M + G + Y VV+ G CR
Sbjct: 564 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGL--CRN 605
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
V +I M + G P+ N L+++ + +A + + M + +PD +++ VI
Sbjct: 329 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 388
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKG 272
++ + +DA+ MV ++G+ P + + + + E+ KA E+I E + +
Sbjct: 389 SSLCRIGRLDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 447
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKL 330
P G + + ++ C E R + GK +M M + G P + ++EG VG +
Sbjct: 448 PPPGVKYFSSIINNLCKEGR--VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 505
Query: 331 ATVVRQRFAEL 341
A + A +
Sbjct: 506 AFALLDAMASI 516
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +I+Q+ + SG P L S ++ C+S+++ +L +M G P+ T N
Sbjct: 188 AESIVQKMVDSGIAP----DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYN 243
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ E+ +V K MSS +P +++ + I A+ +TN+A + MVL
Sbjct: 244 SLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVL 302
>gi|356528294|ref|XP_003532739.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 594
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/239 (21%), Positives = 102/239 (42%), Gaps = 11/239 (4%)
Query: 88 SFIPLRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL 146
F+ L Y+ L+ Y LQ + + A+ + + GC+P + L W
Sbjct: 311 GFMILTGEGPDVFTYNSLIHIYCLQ--NKMNEAMRVFHLMVSRGCLPDIVVFTSLIHGWC 368
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
+ + V +L EM +G+ PD T L+ C + + A ++ M VP+L
Sbjct: 369 KDK-NINKVMHLLEEMAKMGFVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNL 427
Query: 207 ESYSIVIGAMSTARKTNDAV---EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
++ ++++ + ++AV E M++ L++ ++ ++ + +A + N A E
Sbjct: 428 QTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGMCSAGKLN----AAWE 483
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ L KG I Y ++++G + A ++ M E G +P V+GL
Sbjct: 484 LFSSLPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEENGCLPDNCTYNVFVQGL 542
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 13/158 (8%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ L M G P+ TC ++ LC + L EA + + M + ++ YSI++ M
Sbjct: 413 ELFLNMHKYGQVPNLQTCAVILDGLCKGNLLSEAVSLAEAMEKSNLDLNIVIYSILLDGM 472
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRANREMWKAVEMIEFLER 270
+A K N A E+ +P +G+ I V L + KA +++ +E
Sbjct: 473 CSAGKLNAAWELFSS-------LPGKGLQINVYTYTIMIKGLCKQGSLDKAEDLLINMEE 525
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
GC Y V V+G L +E + K + M ++GF
Sbjct: 526 NGCLPDNCTYNVFVQGLLTKKEIARSIKYLTIMRDKGF 563
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 34/170 (20%), Positives = 76/170 (44%), Gaps = 1/170 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ +L EM +G D T N LV + C ++++A V+ M PD+ +Y+ +
Sbjct: 269 KETGSLLDEMIKMGMRLDLQTLNILVDAFCKEGKVMQAKSVIGFMILTGEGPDVFTYNSL 328
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I K N+A+ + MV + G +P + + ++ + K + ++E + + G
Sbjct: 329 IHIYCLQNKMNEAMRVFHLMV-SRGCLPDIVVFTSLIHGWCKDKNINKVMHLLEEMAKMG 387
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ G + + A + + M + G +P ++ +++GL
Sbjct: 388 FVPDVVTWTTLIGGFCQAGRPLAAKELFLNMHKYGQVPNLQTCAVILDGL 437
>gi|224136033|ref|XP_002327364.1| predicted protein [Populus trichocarpa]
gi|222835734|gb|EEE74169.1| predicted protein [Populus trichocarpa]
Length = 662
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 66/145 (45%), Gaps = 2/145 (1%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L A+L R + A + LEMK G+ D N L+ +L ++ A KV + M
Sbjct: 217 LVQAYLRSRNTEKGFA-VYLEMKKKGHMLDIFAFNMLLDALVKDSEVDHAYKVFEDMKRK 275
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
C PD +Y+I+I K ++++E+ +EM LN G P + AL R + K
Sbjct: 276 HCEPDEYTYTIMIRMTGKIGKPDESLELFEEM-LNKGYSPNVIAYNTMIQALANARMVDK 334
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVE 285
A+ + + K C Y V++
Sbjct: 335 AILLFLKMVEKECRPSEFTYSVILH 359
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 61/139 (43%), Gaps = 2/139 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + D+ +MK G PD T N L+SS ++ EA K+ + + ++ PD SY+
Sbjct: 468 QISPLHDLYEKMKQDGPLPDTFTYNILISSFGRAGKVDEAIKIFEELEDSDYKPDTCSYN 527
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I + ++A KEM GL P + ++ A + + +
Sbjct: 528 SLINCLGKNGHLDEAHMKFKEMC-EKGLNPDVVTYSTLIECFGKTDKVEMACRLFDEMLA 586
Query: 271 KGCPIGFQGYEVVVEGCLE 289
+GC Y ++++ CLE
Sbjct: 587 EGCYPNIVTYNILLD-CLE 604
>gi|356523285|ref|XP_003530271.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g28010-like [Glycine max]
Length = 703
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/204 (25%), Positives = 90/204 (44%), Gaps = 13/204 (6%)
Query: 138 RLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
L+ S ++ C+S V + +L EM+ G D + L+S+ C + ++
Sbjct: 184 NLVTYSVLIDCYCKSGEVGEGLGLLEEMEREGLKADVFVYSSLISAFCGEGDIETGRELF 243
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M + P++ +YS ++ + + +A EM+K+M G+ P +A L
Sbjct: 244 DEMLRRKVSPNVVTYSCLMQGLGRTGRWREASEMLKDMTAR-GVRPDVVAYTVLADGLCK 302
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIK 313
N A+++++ + +KG G Y VVV G C E R G M M ++G P
Sbjct: 303 NGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEM-MVKKGKKPDAV 361
Query: 314 VRQKVVEGLAGVGE-------WKL 330
+++GL G G+ WKL
Sbjct: 362 TYNTLLKGLCGAGKIHEAMDLWKL 385
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 97/246 (39%), Gaps = 33/246 (13%)
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQ-RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
P+ L+ + + H A ++L T R V V + L+L R Q
Sbjct: 75 PRFTSLSALTESFVNTHHPSFAFSVLSLMTKRGFGVNVYNLNLVLKGFC--RSGQCDKAM 132
Query: 157 DILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMS-SAECVPDLESYSIV 212
+ +MK Y PDC T N LV+ C +L EA + + M +C P+L +YS++
Sbjct: 133 SLFSQMKR-NYDCVVPDCVTYNTLVNGFCKAKRLAEARVLFEAMKKGGDCRPNLVTYSVL 191
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV------------AAALRANREMWK 260
I + + + + +++E M R+G+ V + RE++
Sbjct: 192 IDCYCKSGEVGEGLGLLEE-------MEREGLKADVFVYSSLISAFCGEGDIETGRELFD 244
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
E L RK P Y +++G + A + + MT RG P + + +
Sbjct: 245 -----EMLRRKVSP-NVVTYSCLMQGLGRTGRWREASEMLKDMTARGVRPDVVAYTVLAD 298
Query: 321 GLAGVG 326
GL G
Sbjct: 299 GLCKNG 304
Score = 41.2 bits (95), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 40/144 (27%), Positives = 67/144 (46%), Gaps = 9/144 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ--SVA- 156
+ Y++L+ L + L AL + + + SG P + S + C+ Q SVA
Sbjct: 433 VTYNFLIEGYLAA-RKLIEALKLWKYAVESGFSP----NSMTYSVMINGLCKMQMLSVAR 487
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ +MK G P N L++SLC D L +A + + M + D+ S++I+I
Sbjct: 488 GLFCKMKDSGIRPTVIDYNALMTSLCREDSLEQARSLFQEMRNVNHNVDVVSFNIIIDGT 547
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
A A E++ EM + M L+P
Sbjct: 548 LKAGDVKSAKELLSEMFM-MDLVP 570
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 88/213 (41%), Gaps = 37/213 (17%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ D +L M G P T N +V+ LC D++ +A V++ M PD
Sbjct: 301 CKNGRAGDAIKVLDLMVQKGEEPGTLTYNVVVNGLCKEDRMDDAFGVVEMMVKKGKKPDA 360
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+Y+ ++ + A K ++A+++ K + ++ +++ +I+
Sbjct: 361 VTYNTLLKGLCGAGKIHEAMDLWK---------------LLLSEKFHVKPDVFTCNNLIQ 405
Query: 267 FLERKG------------CPIGFQG----YEVVVEGCLECREYILAGKTVMGMTERGFIP 310
L ++G +G QG Y ++EG L R+ I A K E GF P
Sbjct: 406 GLCKEGRVHDAARIHSSMVEMGLQGNIVTYNFLIEGYLAARKLIEALKLWKYAVESGFSP 465
Query: 311 YIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
++ GL + ++ +V R F ++K
Sbjct: 466 NSMTYSVMINGLC---KMQMLSVARGLFCKMKD 495
>gi|297607630|ref|NP_001060305.2| Os07g0621100 [Oryza sativa Japonica Group]
gi|255677977|dbj|BAF22219.2| Os07g0621100 [Oryza sativa Japonica Group]
Length = 734
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L++ +C + EA VLK MS PD+ +Y+ +I +S + ++A
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309
Query: 226 VEMMKEMVLNMGLM-PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ +++EMV ++ P V L M +A ++ +E GC + Y +++
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLI 369
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
G L + A + + MT G P
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEP 395
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 17/261 (6%)
Query: 88 SFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL--RSGCVPVPQIRLLLSSAW 145
S + P R ++Y+ +L+ + H + +L C P +L A
Sbjct: 66 SLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRAL 125
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
R Q+V +L M+S G D T L+ LC ++ +A +++ M + P+
Sbjct: 126 CADRLADQAVG-LLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ YS ++ + + D ++ EM G+ P M + +L + KA ++
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVEMS-EKGIEPDVVMYTGLIDSLCKVGKAKKAHGVM 243
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG----MTERGFIPYIKVRQKVVEG 321
+ + R+G Y V++ C+ C+E + K +G M+E+G P + +++G
Sbjct: 244 DMMVRRGLEPNVVTYNVLIN-CM-CKEGSV--KEAIGVLKKMSEKGVAPDVVTYNTLIKG 299
Query: 322 LAGVGE-----WKLATVVRQR 337
L+ V E W L +VR +
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGK 320
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 40/171 (23%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+++ EM S+G PD T + L+ C + Q+ A +L M P+L Y ++ AM
Sbjct: 383 ELMDEMTSLGLEPDSFTYSILIKGFCKMWQVDRAEDLLSTMRDRGIEPELFHYIPLLVAM 442
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + EM N L + A +A ++ A E+++ + +G
Sbjct: 443 CEQGMMERARNLFNEMDNNFPL-DVVAYSTMIHGACKAG-DLKTAKELLKSIVDEGLTPD 500
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y +V+ + + A + MT GF+P + V +++G + GE
Sbjct: 501 AVTYSIVINMFAKSGDMEAANGVLKQMTASGFLPDVAVFDSLIQGYSTKGE 551
>gi|222641466|gb|EEE69598.1| hypothetical protein OsJ_29150 [Oryza sativa Japonica Group]
Length = 579
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/161 (23%), Positives = 73/161 (45%), Gaps = 1/161 (0%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
KS G P+ T + + CA + A +VL M + P++ +Y+ VI + +
Sbjct: 287 KSHGLVPNAATYGPFLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEI 346
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
N+A ++ E + G P + A +E+ KA+ +I ++++ CP Y +
Sbjct: 347 NEAYNILDE-ITTQGEKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNM 405
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+++ + + A + GM +RGF P ++ GLA
Sbjct: 406 LLKMLISVGRFDTAIEVWDGMEKRGFHPGAATYAVMIHGLA 446
Score = 43.9 bits (102), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 32/145 (22%), Positives = 67/145 (46%), Gaps = 4/145 (2%)
Query: 145 WLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
+L C S+ V L + + H P+ T N ++ LC + ++ EA +L +++
Sbjct: 301 FLHAACASKDVRAALRVLDRMHTHALTPNVFTYNAVIRLLCDLGEINEAYNILDEITTQG 360
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
PD+ SY+ ++ A ++ N A+ ++ M + R + + + R A
Sbjct: 361 EKPDVWSYNTLLNAHCKLKEVNKALRLISRMDKELCPPDRHSYNMLLKMLISVGR-FDTA 419
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEG 286
+E+ + +E++G G Y V++ G
Sbjct: 420 IEVWDGMEKRGFHPGAATYAVMIHG 444
>gi|119638441|gb|ABL85032.1| auxin efflux carrier [Brachypodium sylvaticum]
Length = 895
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 58/217 (26%), Positives = 98/217 (45%), Gaps = 10/217 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+L SG P + L ++ + ++ DIL EM S G P+ + L+
Sbjct: 332 AKALLDEMSCSGLKPNIVVYGTLVDGFM-KEGKTAEAFDILKEMISAGVQPNKIMYDNLI 390
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC I QL A+K+LK M PD +Y+ ++ + A E++ EM N G+
Sbjct: 391 RGLCKIGQLGRASKLLKEMIKVGLRPDTFTYNPLMQGHFQQHDKDGAFELLNEM-RNSGI 449
Query: 239 MPR---QGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYI 294
+P G++I L N E +A ++E + +G P F Y ++ G +
Sbjct: 450 LPNVYSYGIMIN---GLCQNGESKEAGNLLEEMISEGLKPNAFM-YAPLIIGHSKEGNIS 505
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
LA + + MT+ P + +++GL+ VG + A
Sbjct: 506 LACEALEKMTKANVHPDLFCYNSLIKGLSTVGRMEEA 542
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 79/171 (46%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T L++ LC +L EA +L MS + P++ Y ++
Sbjct: 303 EMVDYGLSPDAFTYGALMNGLCKGSRLKEAKALLDEMSCSGLKPNIVVYGTLVDGFMKEG 362
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
KT +A +++KEM+ + G+ P + M + L ++ +A ++++ + + G Y
Sbjct: 363 KTAEAFDILKEMI-SAGVQPNKIMYDNLIRGLCKIGQLGRASKLLKEMIKVGLRPDTFTY 421
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + + A + + M G +P + ++ GL GE K A
Sbjct: 422 NPLMQGHFQQHDKDGAFELLNEMRNSGILPNVYSYGIMINGLCQNGESKEA 472
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 72/356 (20%), Positives = 138/356 (38%), Gaps = 34/356 (9%)
Query: 13 VNFRPCLLQFSSL-RSMSSLRTLEETVRAAVDAKDYQQIPELL------------GSFEE 59
N P L ++SL + +S++ +EE + +P+ G+ E+
Sbjct: 517 ANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCKTGNLEK 576
Query: 60 ACQ----------NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106
A Q PN ++ L + +++ + + +L+S L +P ++
Sbjct: 577 ADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSM--LGSGDKPDNHIYGIV 634
Query: 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
L + +A +L ++G VP I L S + ++V +L EM G
Sbjct: 635 IRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVG-LLDEMAKEG 693
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
P N L+ C + A V + + VP+ +Y+ +I DA
Sbjct: 694 LEPGIVCYNALIDGFCRSGDISRARNVFDSILAKGLVPNCVTYTALIDGNCKNGDITDAF 753
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ KEM L+ G+ P + +A ++ +A+ + E + +G + +V G
Sbjct: 754 DLYKEM-LDRGIAPDAFVYNVLATGCSDAADLEQALFLTEEMFNRGYA-NVSLFNTLVHG 811
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ + K + M +R +P + +KVV G+ A V FAEL+
Sbjct: 812 FCKRGKLQETEKLLHVMMDREIVPNAQTVEKVVSEFGKAGKLGEAHRV---FAELQ 864
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 54/245 (22%), Positives = 101/245 (41%), Gaps = 10/245 (4%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIR 138
K++ EM++ + LRP + Y+ L+ Q H A +L SG +P V
Sbjct: 404 KLLKEMIK--VGLRPDT---FTYNPLMQGHFQQ-HDKDGAFELLNEMRNSGILPNVYSYG 457
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
++++ L + +S+ ++L EM S G P+ L+ + A + L+ M+
Sbjct: 458 IMING--LCQNGESKEAGNLLEEMISEGLKPNAFMYAPLIIGHSKEGNISLACEALEKMT 515
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
A PDL Y+ +I +ST + +A E + V GL+P + + +
Sbjct: 516 KANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQ-VQKRGLVPDEFTYSGLIHGYCKTGNL 574
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
KA +++ + G Y ++EG + +Y + M G P + V
Sbjct: 575 EKADQLLRQMLNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNHIYGIV 634
Query: 319 VEGLA 323
+ L+
Sbjct: 635 IRNLS 639
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 57/124 (45%), Gaps = 6/124 (4%)
Query: 114 HPLPLALAILQRTLRS----GCVPVPQIRLLLSSAWLERRCQS-QSVADILLEMKSIGYH 168
HP PL LA +QR ++ P P +L ++ S ++ A ++L M +G
Sbjct: 147 HP-PLVLASIQRAIQDTDHRSRSPSPSTAVLDVLVDTYKKTGSVRNAAQVVLMMADLGLA 205
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P CN L+ L D + K+ M A +PD+ +YS I A AR + A ++
Sbjct: 206 PTRRCCNGLLKDLLRADAMELLWKLKGFMEGAGILPDVYTYSTFIEAHCKARDFDAAKKV 265
Query: 229 MKEM 232
+EM
Sbjct: 266 FEEM 269
Score = 40.8 bits (94), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 34/182 (18%), Positives = 71/182 (39%), Gaps = 1/182 (0%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M HPD N L+ L + ++ EA + + VPD +YS +I
Sbjct: 511 LEKMTKANVHPDLFCYNSLIKGLSTVGRMEEAEEYYAQVQKRGLVPDEFTYSGLIHGYCK 570
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A +++++M LN GL P + + + K +++ + G
Sbjct: 571 TGNLEKADQLLRQM-LNSGLKPNADTYTDLLEGYFKSNDYEKVSSILQSMLGSGDKPDNH 629
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
Y +V+ +A + + + G +P + + ++ GL + + + A +
Sbjct: 630 IYGIVIRNLSRSENMEVAFMVLTEVEKNGLVPDLHIYSSLISGLCKIADMEKAVGLLDEM 689
Query: 339 AE 340
A+
Sbjct: 690 AK 691
>gi|302772382|ref|XP_002969609.1| hypothetical protein SELMODRAFT_91306 [Selaginella moellendorffii]
gi|300163085|gb|EFJ29697.1| hypothetical protein SELMODRAFT_91306 [Selaginella moellendorffii]
Length = 238
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 54/230 (23%), Positives = 106/230 (46%), Gaps = 16/230 (6%)
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY 167
+ L S + A+ + + + GC P + L S + R DI+ +M + G
Sbjct: 18 HALSSTGRVGEAVDLSRHMVEKGCAPDVHSYIYLISGLV-RSENMDRAPDIIADMAARGC 76
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
P+ N L+ L + D+ EA V+K M A C PD+E+ +IVI + KT++A+E
Sbjct: 77 KPNVHNFNLLLEFLLSSDKACEALGVVKRMVDAGCAPDIETKNIVIQMLCKEGKTDEALE 136
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ + + + + P + + L N ++ +++I+ +++KG Y V+E
Sbjct: 137 LFQGLKSSR-IKPNKATFDVLLVGLAVNDKLLDCLQVIKKMDKKGFAPEEATYACVIEAF 195
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
TV G+ ++ F Y +++ +EG+ E + ++R+R
Sbjct: 196 -----------TVGGLYDQAFRLYGRMK---LEGMDLSLELQNQMLMRRR 231
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 67/141 (47%), Gaps = 4/141 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +++R + +GC P + + ++ L + ++ ++ +KS P+ T + L+
Sbjct: 99 ALGVVKRMVDAGCAPDIETKNIVIQ-MLCKEGKTDEALELFQGLKSSRIKPNKATFDVLL 157
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL---N 235
L D+L++ +V+K M P+ +Y+ VI A + + A + M L +
Sbjct: 158 VGLAVNDKLLDCLQVIKKMDKKGFAPEEATYACVIEAFTVGGLYDQAFRLYGRMKLEGMD 217
Query: 236 MGLMPRQGMVIKVAAALRANR 256
+ L + M+++ +L A R
Sbjct: 218 LSLELQNQMLMRRRRSLEAKR 238
>gi|242069905|ref|XP_002450229.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
gi|241936072|gb|EES09217.1| hypothetical protein SORBIDRAFT_05g002220 [Sorghum bicolor]
Length = 797
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 51/225 (22%), Positives = 96/225 (42%), Gaps = 5/225 (2%)
Query: 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL 127
S L+ N R + + +S I R +P +A +L + + L +L +
Sbjct: 313 SLLNYLCNNGRCREARFLFDSMI--RKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMV 370
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
+G P I ++ +A+ ++ +++ I +MK G PD L+ +LC + ++
Sbjct: 371 ENGLSPDHHIFNIIFTAYAKKAMIDEAM-HIFNKMKQQGLSPDVVNYGALIDALCKLGRV 429
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
+A M + P++ ++ ++ + T K A E EM LN G+ P
Sbjct: 430 DDAVLKFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKAKEFYFEM-LNQGIRPDVVFFNT 488
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECR 291
+ L ++ KA +I+ +ER G G Y ++ G CL R
Sbjct: 489 ILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGR 533
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 57/262 (21%), Positives = 105/262 (40%), Gaps = 15/262 (5%)
Query: 82 IDEMLESFIPLRPRSRPK--IAYDYLLSYTLQ------SLHPLPLALAILQRTLRSGCV- 132
+D+ L+ F L +RP IA+++LL+ + S L +++ R +R +
Sbjct: 30 LDDALKLFDGLLTHARPASVIAFNHLLTAVSRVSGRRSSTTESELVVSLFNRMIRECTIK 89
Query: 133 --PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P P +L + A L +KS G+ + N L+ LC +L EA
Sbjct: 90 VTPDPCTYSILIGCFCRMGRLEHGFATFGLILKS-GWRVNNIVINQLLKGLCDAKRLCEA 148
Query: 191 AKVL-KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM--PRQGMVIK 247
+L K M C PD+ SY+ ++ ++ +A+E++ M + G P
Sbjct: 149 MDILVKRMPELGCTPDVVSYNTLLKGFCNEKRAEEALELLHMMADSQGRSCPPNVVSYAI 208
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
V ++ KA + + +G Y V++G + + A M ++G
Sbjct: 209 VINGFFTEGQVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKG 268
Query: 308 FIPYIKVRQKVVEGLAGVGEWK 329
P ++ G +G+WK
Sbjct: 269 VKPDNDTYNCLIHGYLSIGKWK 290
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 86/213 (40%), Gaps = 2/213 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + Q+ + G P L +L + + V +L EM + G PDC T L+
Sbjct: 257 AEGVFQQMIDKGVKPDNDTYNCLIHGYLSIG-KWKEVVRMLEEMSAHGLKPDCYTYGSLL 315
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC + EA + M P++ Y I+I +T ++ +++ MV N GL
Sbjct: 316 NYLCNNGRCREARFLFDSMIRKGIKPNVAIYGILIHGYATKGALSEMHDLLNLMVEN-GL 374
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + A + +A+ + ++++G Y +++ + A
Sbjct: 375 SPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALIDALCKLGRVDDAVL 434
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M G P I V +V GL V +W+ A
Sbjct: 435 KFNQMMNEGVAPNIFVFNSLVYGLCTVDKWEKA 467
Score = 45.4 bits (106), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 55/280 (19%), Positives = 116/280 (41%), Gaps = 11/280 (3%)
Query: 49 QIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLS 107
++ +LL E +P+ F F + +IDE + F ++ + P + L
Sbjct: 361 EMHDLLNLMVENGLSPDHHIFNIIFTAYAKKAMIDEAMHIFNKMKQQGLSPDVVNYGALI 420
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC---QSQSVADILLEMKS 164
L L + A+ + + G P + + ++ + C + + + EM +
Sbjct: 421 DALCKLGRVDDAVLKFNQMMNEGVAP----NIFVFNSLVYGLCTVDKWEKAKEFYFEMLN 476
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G PD N ++ +LC Q+++A +++ M P + SY+ +IG + ++
Sbjct: 477 QGIRPDVVFFNTILCNLCTKGQVMKAQRLIDLMERVGTRPGVISYTTLIGGHCLVGRIDE 536
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
A + + +++L++GL P + + RA R + A + + R G G Y +
Sbjct: 537 AAKSL-DVMLSVGLKPDEWTYNTLLHGYCRAGR-IDDAYGVFREMLRNGITPGVVTYSTI 594
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+ G R + A + + M G I + ++ GL+
Sbjct: 595 LHGLFTTRRFSEAKELYLNMITSGKQWNIWIYNIILNGLS 634
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 56/136 (41%), Gaps = 1/136 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ LEM G P+ T ++ LC + A V + M PD ++Y+
Sbjct: 218 QVDKAYNLFLEMMDRGIQPNVVTYTTVIDGLCKAQVVDRAEGVFQQMIDKGVKPDNDTYN 277
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I + K + V M++EM + GL P + L N +A + + + R
Sbjct: 278 CLIHGYLSIGKWKEVVRMLEEMSAH-GLKPDCYTYGSLLNYLCNNGRCREARFLFDSMIR 336
Query: 271 KGCPIGFQGYEVVVEG 286
KG Y +++ G
Sbjct: 337 KGIKPNVAIYGILIHG 352
>gi|224081503|ref|XP_002306437.1| predicted protein [Populus trichocarpa]
gi|222855886|gb|EEE93433.1| predicted protein [Populus trichocarpa]
Length = 462
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/172 (22%), Positives = 82/172 (47%), Gaps = 5/172 (2%)
Query: 139 LLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ + ++ C ++++ AD L+ +K G PD N ++ C +++ +EA ++ K
Sbjct: 229 LVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFLYNTIMKGYCLLNKGIEAVRIYK 288
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M PDL +Y+ +I +S + ++A +++K MV G P + +
Sbjct: 289 QMKEEGVEPDLVTYNTLIFGLSKCGRVSEAKKLLKIMV-ESGHFPDAVTYTSLMNGMCRE 347
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
++ A ++E +E KGC Y ++ G + R + G + G+ ++G
Sbjct: 348 GDVLGAAALLEEMELKGCSPNSCTYNTLLHGFCKGRR-LNKGVELYGVIKKG 398
Score = 46.6 bits (109), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 98/227 (43%), Gaps = 7/227 (3%)
Query: 104 YLLSYTLQSLHPLPLALAILQ---RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160
+L SYT S+ L ++++L +TL S +LLS + E S +L
Sbjct: 90 FLQSYT--SISTLDDSISLLDHMVKTLPSLSPDRSTYHVLLSQSCREPDSSLSSAQKVLN 147
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M + G+ P+ T + + SLC+ ++ +A ++K SS PD +Y+ ++ + +R
Sbjct: 148 LMINKGFKPNQFTVDVAIRSLCSAGRVDDAILLVKEFSSKHSKPDTFTYNFLVKCLCKSR 207
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQG 279
N + EM + + P + + + + +A ++ L+ G P F
Sbjct: 208 IFNSVYSFIDEMKSSFDIKPDLVTYTILIDNVCNAKNIREADRLVAVLKECGLKPDAFL- 266
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++G + I A + M E G P + ++ GL+ G
Sbjct: 267 YNTIMKGYCLLNKGIEAVRIYKQMKEEGVEPDLVTYNTLIFGLSKCG 313
>gi|15219409|ref|NP_178072.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75200774|sp|Q9SAJ5.1|PP133_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g79540
gi|4835755|gb|AAD30222.1|AC007202_4 Contains similarity to gi|2827663 F18F4.190 membrane-associated
salt-inducible-like protein from Arabidopsis thaliana
BAC gb|AL021637 [Arabidopsis thaliana]
gi|332198140|gb|AEE36261.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 780
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T L+ L + +A K+ M+ P+ +Y+I+I +
Sbjct: 188 EMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRG 247
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+DA ++ EM + G P + M +A E++ E+ G +G +GY
Sbjct: 248 SADDARKLFYEMQTS-GNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGY 306
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+++G R Y A + M ++ P I + +++GL+ G+
Sbjct: 307 SSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGK 353
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ S D + EM++ G +PD N L+ C + ++VEA ++L+ V L
Sbjct: 244 CQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGL 303
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + AR+ A E+ M L + P + + L ++ A++++
Sbjct: 304 RGYSSLIDGLFRARRYTQAFELYANM-LKKNIKPDIILYTILIQGLSKAGKIEDALKLLS 362
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+ KG Y V++
Sbjct: 363 SMPSKGISPDTYCYNAVIKA 382
>gi|356519757|ref|XP_003528536.1| PREDICTED: protein Rf1, mitochondrial-like [Glycine max]
Length = 871
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q + + L+M+ IG PD T N L+ C +V A +++ M S PD+
Sbjct: 644 RRGQMKFAIETFLDMQRIGLLPDIFTFNILIGGYCKAFDMVGAGEIVNKMYSCGLDPDIT 703
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y+ + RK N AV ++ +++ + G++P
Sbjct: 704 TYNTYMHGYCRMRKMNQAVIILDQLI-SAGIVP 735
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 1/162 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G D + +VSSLC +L EA K+L+ + + +++ +IGA S A + A
Sbjct: 417 GLFLDSSLYDVMVSSLCWAGRLDEAMKLLQELLEKGLTLSVVAFNSLIGAYSRAGLEDKA 476
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
E + MV G P + L + +A ++ + KG PI Y V+++
Sbjct: 477 FEAYRIMV-RCGFTPSSSTCNSLLMGLCRKGWLQEARILLYRMLEKGFPINKVAYTVLLD 535
Query: 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G + A M ERG P +++GL+ G
Sbjct: 536 GYFKMNNLEGAQFLWKEMKERGIYPDAVAFTALIDGLSKAGN 577
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EMK G +PD L+ L + EA +V MS+ VP+ +Y+ +I +
Sbjct: 552 EMKERGIYPDAVAFTALIDGLSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCG 611
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +A+++ KEM GL+ + +M A+E ++R G +
Sbjct: 612 RVTEALKLEKEM-RQKGLLSDTFTFNIIIDGFCRRGQMKFAIETFLDMQRIGLLPDIFTF 670
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
+++ G + + + AG+ V M G P I + G
Sbjct: 671 NILIGGYCKAFDMVGAGEIVNKMYSCGLDPDITTYNTYMHG 711
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 46/95 (48%), Gaps = 1/95 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + + ++ LEM +IG+ P+ N L+ LC ++ EA K+ K M + D
Sbjct: 572 LSKAGNVEEAYEVFLEMSAIGFVPNNFAYNSLIRGLCDCGRVTEALKLEKEMRQKGLLSD 631
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+++I+I + A+E +M +GL+P
Sbjct: 632 TFTFNIIIDGFCRRGQMKFAIETFLDMQ-RIGLLP 665
>gi|297842741|ref|XP_002889252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297335093|gb|EFH65511.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 780
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 70/167 (41%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T L+ L + +A K+ M+ P+ +Y+I+I +
Sbjct: 188 EMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRG 247
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
DA ++ EM + G P + M +A E++ E+ G +G +GY
Sbjct: 248 SPEDARKLFYEMKAS-GNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGY 306
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+++G R Y A + M +R P I + +++GL+ G+
Sbjct: 307 SSLIDGLFRARRYTQAFELYANMLKRNIKPDIILYTILIQGLSKAGK 353
Score = 45.4 bits (106), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ S D + EMK+ G +PD N L+ C + ++VEA ++L+ V L
Sbjct: 244 CQRGSPEDARKLFYEMKASGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGL 303
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + AR+ A E+ M L + P + + L ++ A++++
Sbjct: 304 RGYSSLIDGLFRARRYTQAFELYANM-LKRNIKPDIILYTILIQGLSKAGKIEDALKLLR 362
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+ KG Y V++
Sbjct: 363 SMPSKGITPDTYCYNAVIKA 382
>gi|125556563|gb|EAZ02169.1| hypothetical protein OsI_24261 [Oryza sativa Indica Group]
Length = 991
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I + ++GC P L +++ ++ ++L G+ P T L+
Sbjct: 342 ALKIKELMEKNGCHPDDWTYNTLIYGLCDQK--TEEAEELLNNAVKEGFTPTVVTFTNLI 399
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C ++ +A ++ M S++C DL+ + +I ++ + +A E++ E+ N GL
Sbjct: 400 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN-GL 458
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + + ++ A+E+++ +ER GC Y ++ G ++ ++ A
Sbjct: 459 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 518
Query: 299 TVMGMTERGFIPYIKVRQKVVEG 321
+ M + G IP + +++G
Sbjct: 519 LLTKMQKDGIIPNVITYTTLLQG 541
Score = 44.7 bits (104), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 41/192 (21%), Positives = 82/192 (42%), Gaps = 15/192 (7%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ D++L+M+ G PD T N L+ + + A LK M A C P+ +Y ++
Sbjct: 721 EDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLL 780
Query: 213 I-----GAMSTARKTN----------DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ G ++ R + D + E ++ GL P + A
Sbjct: 781 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 840
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A +++ + KG Y ++++ C + + + A V M+E GF P ++ +
Sbjct: 841 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 900
Query: 318 VVEGLAGVGEWK 329
+V GL G+++
Sbjct: 901 LVVGLCNEGDFE 912
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE----MKSIGYHPDC 171
L A +L +G VP ++ ++ ++ C+S V DI LE M+ G P+
Sbjct: 443 LKEAKELLNEISANGLVP----NVITYTSIIDGYCKSGKV-DIALEVLKMMERDGCQPNA 497
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L+ L +L +A +L M +P++ +Y+ ++ ++A + E
Sbjct: 498 WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF-E 556
Query: 232 MVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ GL P + + AL +A R A E F+ RKG + Y +++G +
Sbjct: 557 MMEQNGLKPDEHAYAVLTDALCKAGR----AEEAYSFIVRKGVALTKVYYTTLIDGFSKA 612
Query: 291 REYILAGKTVMGMTERGFIP 310
A + M + G P
Sbjct: 613 GNTDFAATLIERMIDEGCTP 632
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ A ++ M G PD T + L+ +LC +L EA +L MS + +Y+
Sbjct: 614 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 673
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I M K + A M EM + G P + + A ++I +ER
Sbjct: 674 ILIDEMLREGKHDHAKRMYNEMT-SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 732
Query: 271 KGCPIGFQGYEVVVEGC 287
+G Y ++++GC
Sbjct: 733 EGVAPDVVTYNILIDGC 749
>gi|225424122|ref|XP_002280156.1| PREDICTED: pentatricopeptide repeat-containing protein At1g22960,
mitochondrial-like [Vitis vinifera]
Length = 718
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G+ PD N +V LC + L EA+++L+ M S +PD +Y+ +I A
Sbjct: 504 EMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENG 563
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ E+ EM L+ GL P + + +A ++ KG Y
Sbjct: 564 RLRKGREIFYEM-LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G + R A M E+G P ++ +G W+ A
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEA 673
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
E++SI P T N L+ LC +L A ++ M + PD+ +Y+I++
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMG 458
Query: 221 KTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ A E EM L+ GL + ++ L+ + +A + E + KG P
Sbjct: 459 SLSMAQEFFDEM-LHEGLELDSYAYATRIVGELKLG-DTSRAFSLQEEMLAKGFPPDLII 516
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y VVV+G + A + + M G IP
Sbjct: 517 YNVVVDGLCKLGNLEEASELLQKMVSDGVIP 547
>gi|357481045|ref|XP_003610808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355512143|gb|AES93766.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 1084
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 47/210 (22%), Positives = 91/210 (43%), Gaps = 12/210 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
A +L L GC P ++ A ++ C+ Q ++ +M GY P+ T +
Sbjct: 635 AHELLDTMLAHGCEP----NQIVYDAVIDGFCKIGKLQDAQEVFTKMSERGYSPNLYTYS 690
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ L ++L KVL M C P++ Y+ ++ + KT++A ++M +M
Sbjct: 691 SFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLCKIGKTDEAYKLMLKME-E 749
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + + ++ + +E+ + KGC F Y V++ C C +L
Sbjct: 750 KGCNPNVVTYTAMIDGFGKSGKIEQCLELFRDMCSKGCAPNFITYRVLINHC--CSNGLL 807
Query: 296 --AGKTVMGMTERGFIPYIKVRQKVVEGLA 323
A K + M + + +I +K++EG +
Sbjct: 808 DEAYKLLDEMKQTYWPKHILSHRKIIEGFS 837
Score = 45.4 bits (106), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 93/228 (40%), Gaps = 14/228 (6%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC--QSQSVADIL-------LEMKSIGYHP 169
A + ++ ++ GC P L+ + ++ C + Q +DIL EM +G
Sbjct: 368 AYKLFKKMIKCGCQP----GYLVYNIFIGSVCSNEEQPSSDILDLVEKAYSEMLDLGVVL 423
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+ + LC + +A K++ M VPD +YS VIG + A K A +
Sbjct: 424 NKVNVSNFARCLCGAGKFDQAFKIICEMMGKGFVPDDSTYSKVIGFLCDASKVEKAFSLF 483
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+EM N G++P + + + +A + + + KGC Y ++ L+
Sbjct: 484 EEMKRN-GIVPSVYTYTILIDSFCKAGLIQQARKWFDEMLHKGCTPNVVTYTALIHAYLK 542
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
++ +A + M G P + +++G G+ + A + R
Sbjct: 543 AKQMPVADELFEMMLLEGCKPNVVTYTALIDGHCKAGQIEKACQIYAR 590
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 26/116 (22%), Positives = 53/116 (45%), Gaps = 1/116 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD N +VS LC EA +L M S+ C+P++ +Y I++ + +
Sbjct: 277 PDTVFYNRMVSGLCEASLFEEAMDILHRMRSSSCIPNVVTYRILLSGCLRKGQLGRCKRI 336
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ M++ G P + + + A +R+ A ++ + + + GC G+ Y + +
Sbjct: 337 L-SMMITEGCYPNREIFNSLIHAYCKSRDYSYAYKLFKKMIKCGCQPGYLVYNIFI 391
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 64/159 (40%), Gaps = 1/159 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T LV LC +++ EA ++L M + C P+ Y VI K DA E+
Sbjct: 614 PNVITYGALVDGLCKANRVKEAHELLDTMLAHGCEPNQIVYDAVIDGFCKIGKLQDAQEV 673
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+M G P L + + ++++ + C Y +V+G
Sbjct: 674 FTKMS-ERGYSPNLYTYSSFIDCLFKDNRLDLVLKVLSKMLENSCTPNVVIYTEMVDGLC 732
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + A K ++ M E+G P + +++G G+
Sbjct: 733 KIGKTDEAYKLMLKMEEKGCNPNVVTYTAMIDGFGKSGK 771
>gi|125542844|gb|EAY88983.1| hypothetical protein OsI_10467 [Oryza sativa Indica Group]
Length = 525
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ ++ ++ C+++ V + +L EM+ PD T L+ L I Q +A +LK
Sbjct: 245 LVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLK 304
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C PD+ +Y+ I A++ DA +M+EM + GLMP
Sbjct: 305 EMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMA-SKGLMPNATTYNLFFRCYYWA 363
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ A ++ E + +GC Q +V C A + M GF + V
Sbjct: 364 YDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVS 423
Query: 316 QKVVEGLAGVGE 327
+ + L G+
Sbjct: 424 DVLFDLLCDEGK 435
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S W ++ + EM+ +G PD T N L+ C + A K+L M
Sbjct: 218 ILLSGWK----SAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMRE 273
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ PD+ +Y+ +IG + + + A ++KEM
Sbjct: 274 KDISPDVITYTSLIGGLGLIGQPDKAKHLLKEM 306
>gi|297723047|ref|NP_001173887.1| Os04g0351333 [Oryza sativa Japonica Group]
gi|255675359|dbj|BAH92615.1| Os04g0351333 [Oryza sativa Japonica Group]
Length = 740
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR P + Y +L + +H L LAI+ R L++G P L+ + +
Sbjct: 7 PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYG--FVKDGEV 64
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ LEM G P CN ++ LC + ++ +A +++ M + PDL +YS++
Sbjct: 65 DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLI 124
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
I + ++ + A ++++MV
Sbjct: 125 IDGLCKSKAMDKAERVLEQMV 145
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
+P P ++ S+ + C+ VA DI+ M G P+ T N L+ C + +
Sbjct: 361 IPPPGVKYF--SSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 418
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L M+S P+ Y ++ + +DA+ + ++M L+ G+ P + +
Sbjct: 419 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM-LHKGVKPTSVLYSII 477
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L R A +M + G + Y VV+ G CR
Sbjct: 478 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGL--CRN 519
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
V +I M + G P+ N L+++ + +A + + M + +PD +++ VI
Sbjct: 243 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 302
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKG 272
++ + +DA+ MV ++G+ P + + + + E+ KA E+I E + +
Sbjct: 303 SSLCRIGRLDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 361
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKL 330
P G + + ++ C E R + GK +M M + G P + ++EG VG +
Sbjct: 362 PPPGVKYFSSIINNLCKEGR--VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 419
Query: 331 ATVVRQRFAEL 341
A + A +
Sbjct: 420 AFALLDAMASI 430
Score = 40.4 bits (93), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +I+Q+ + SG P L S ++ C+S+++ +L +M G P+ T N
Sbjct: 102 AESIVQKMVDSGIAP----DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYN 157
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ E+ +V K MSS +P +++ + I A+ +TN+A + MVL
Sbjct: 158 SLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVL 216
>gi|224133698|ref|XP_002321639.1| predicted protein [Populus trichocarpa]
gi|222868635|gb|EEF05766.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/155 (24%), Positives = 74/155 (47%), Gaps = 2/155 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ M+ GY PD T + LV LC +L EA KVL M + C+PD+++++I+I
Sbjct: 241 IVKAMRDAGYEPDNITYSQLVFGLCKSKRLEEACKVLDEMEAGGCIPDIKTWTILIQGHF 300
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + + + + +M P ++ + + R+M A + + K + +
Sbjct: 301 AANQVDKGLLCLVKMT-EKNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPW 359
Query: 278 QG-YEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
Q Y++++E L+ R+ A + M + + P+
Sbjct: 360 QATYKLLIEKLLQVRKLEEATDLLRLMKKHNYPPF 394
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/135 (23%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L S LE C+ +L EM++ G PD T L+ A +Q+ + L M+
Sbjct: 264 LCKSKRLEEACK------VLDEMEAGGCIPDIKTWTILIQGHFAANQVDKGLLCLVKMTE 317
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD + +++ + RK + A + EMV + L+P Q + L R++
Sbjct: 318 KNTDPDADLLDVLVKGFLSQRKMDGAYTFLVEMVNKLRLVPWQATYKLLIEKLLQVRKLE 377
Query: 260 KAVEMIEFLERKGCP 274
+A +++ +++ P
Sbjct: 378 EATDLLRLMKKHNYP 392
>gi|224131362|ref|XP_002328520.1| predicted protein [Populus trichocarpa]
gi|222838235|gb|EEE76600.1| predicted protein [Populus trichocarpa]
Length = 501
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/180 (22%), Positives = 84/180 (46%), Gaps = 4/180 (2%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M G P+ T N L++ C ++ +A+KV + M C P + SYSI+I +R+
Sbjct: 217 MTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRR 276
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++A ++ +M L+P + L + +A E+ + + G + Y
Sbjct: 277 IDEAKALLTQMS-EKELIPNTVTYNTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYS 335
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++++G + A K + M ER P I + +++G+ G+ ++A ++ F++L
Sbjct: 336 ILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILIQGMFIAGKLEVA---KELFSKL 392
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 49/202 (24%), Positives = 89/202 (44%), Gaps = 20/202 (9%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
GC P +L + + + R ++ A +L +M P+ T N L+ LC L+E
Sbjct: 256 GCAPSVHSYSILINGYCKSRRIDEAKA-LLTQMSEKELIPNTVTYNTLMQGLCHASSLLE 314
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM---------VLNMGLMP 240
A ++ K M S+ +P+L +YSI++ + +A++++ M VL L+
Sbjct: 315 AQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQERKLEPDIVLYNILI- 373
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
QGM I A L +E++ L G + Y ++++G L+ A K
Sbjct: 374 -QGMFI--AGKLEVAKELFSK------LFANGIRPSVRTYNIMIKGLLKEGLSDEAYKLF 424
Query: 301 MGMTERGFIPYIKVRQKVVEGL 322
M + GF+P +++G
Sbjct: 425 RKMEDDGFLPDSCSYNVIIQGF 446
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/211 (21%), Positives = 83/211 (39%), Gaps = 34/211 (16%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
+ ++ Q +V + +M G + T N L++SLC + + A VL M PD
Sbjct: 96 IAKKKQYSTVVSLCNQMDLFGVAHNDYTLNILINSLCRLSHIHFAVSVLSKMFKLGIQPD 155
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEM------------VLNMGLMPRQGMV-------- 245
+++ +I + + +AVE+ EM + + ++ ++GMV
Sbjct: 156 SVTFTTLINGLCNEGRIKEAVELFNEMAGRDAMPNTVTFTILVDVLCKKGMVSEARCVFE 215
Query: 246 ----------IKVAAALRANR----EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
I AL EM A ++ E + KGC Y +++ G + R
Sbjct: 216 TMTEKGVEPNIYTYNALMNGYCLRLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSR 275
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + M+E+ IP +++GL
Sbjct: 276 RIDEAKALLTQMSEKELIPNTVTYNTLMQGL 306
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 41/169 (24%), Positives = 74/169 (43%), Gaps = 4/169 (2%)
Query: 143 SAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+ ++ C + S+ ++ +M S G P+ T + L+ LC L EA K+L M
Sbjct: 300 NTLMQGLCHASSLLEAQELFKKMCSSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSMQE 359
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD+ Y+I+I M A K A E+ ++ N G+ P + L
Sbjct: 360 RKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFAN-GIRPSVRTYNIMIKGLLKEGLSD 418
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+A ++ +E G Y V+++G L+ ++ A + + M R F
Sbjct: 419 EAYKLFRKMEDDGFLPDSCSYNVIIQGFLQNQDPSTAIQLIDEMVGRRF 467
Score = 37.7 bits (86), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 31/178 (17%), Positives = 78/178 (43%), Gaps = 1/178 (0%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + + + M G P + + L++ C ++ EA +L MS E +P+ +
Sbjct: 239 RLEMNDASKVFEIMVGKGCAPSVHSYSILINGYCKSRRIDEAKALLTQMSEKELIPNTVT 298
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
Y+ ++ + A +A E+ K+M + G++P + L + + +A++++ +
Sbjct: 299 YNTLMQGLCHASSLLEAQELFKKMC-SSGMLPNLRTYSILLDGLCKHGHLEEALKLLTSM 357
Query: 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + Y ++++G + +A + + G P ++ +++GL G
Sbjct: 358 QERKLEPDIVLYNILIQGMFIAGKLEVAKELFSKLFANGIRPSVRTYNIMIKGLLKEG 415
>gi|147797511|emb|CAN71434.1| hypothetical protein VITISV_010168 [Vitis vinifera]
Length = 814
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/249 (20%), Positives = 110/249 (44%), Gaps = 16/249 (6%)
Query: 86 LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAW 145
+ F ++ RP ++ L + L LAL++ + +R GC + +LL +
Sbjct: 403 VNKFFMVKEMVRPXTTSFSIVIDGLCNTGKLDLALSLFRDMVRVGC----KQNVLLYNNL 458
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+++ S + + +L EMK G+ P T N + LC + + A +++ M
Sbjct: 459 IDKLSNSNRLEECYLLLKEMKGSGFRPTQFTHNSIFGCLCRREDVTGALDMVREMRVHGH 518
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
P ++ Y++++ + +++ +A + EMV G +P ++ +AA+ ++ KAV
Sbjct: 519 EPWIKHYTLLVKQLCKRKRSAEACNFLAEMV-REGFLPD---IVAYSAAIDGFVKI-KAV 573
Query: 263 EMIEFLERKGCPIGF----QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+ + R C G+ Y ++ G + + A + M +G +P + +
Sbjct: 574 DQALEIFRDICARGYCPDVVAYNTLINGFCKVKRVSEAHDILDEMVAKGLVPSVVTYNLL 633
Query: 319 VEGLAGVGE 327
++G G+
Sbjct: 634 IDGWCKNGD 642
>gi|302801478|ref|XP_002982495.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
gi|300149594|gb|EFJ16248.1| hypothetical protein SELMODRAFT_116601 [Selaginella moellendorffii]
Length = 448
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/264 (22%), Positives = 109/264 (41%), Gaps = 14/264 (5%)
Query: 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
+V+ EM++ +P + Y L+S L + A+ + + VP L
Sbjct: 136 EVVGEMIKKSVP------DGMTYTALIS-VLCKHNRADDAMKVFDIMVEKEIVP----NL 184
Query: 140 LLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+ ++ L C+++ + + +EM GY P T L+ LC + A +
Sbjct: 185 DVYTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSS 244
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M S VPD +Y+ +I A + +A + KE++ + G+ + L
Sbjct: 245 MRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRAS 304
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
++ +A+E+ + KGC Q Y ++ G + E A + M E+GF P +
Sbjct: 305 KVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLFRVMEEKGFSPNTMIYS 364
Query: 317 KVVEGLAGVGEWKLATVVRQRFAE 340
++GL VG+ A Q+ E
Sbjct: 365 TFIDGLCKVGKINEAHEFFQQSVE 388
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 80/186 (43%), Gaps = 4/186 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGA 215
DI M+S G+ PD T L+ C ++ EA + K + E + D Y+++I
Sbjct: 240 DIHSSMRSRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEG 299
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ A K +A+E+ MV + G +P Q + +AN E+ KA+++ +E KG
Sbjct: 300 LCRASKVEEALEVTAGMV-DKGCIPTLQTYNALIMGFFKAN-EVDKALQLFRVMEEKGFS 357
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++G + + A + ERG +P ++ GL G A +
Sbjct: 358 PNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRL 417
Query: 335 RQRFAE 340
+ E
Sbjct: 418 YREMGE 423
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 59/140 (42%), Gaps = 1/140 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D G N L+ LC ++ EA +V GM C+P L++Y+ +I A + + A+++
Sbjct: 289 DAGIYNVLIEGLCRASKVEEALEVTAGMVDKGCIPTLQTYNALIMGFFKANEVDKALQLF 348
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ M G P + L ++ +A E + +GC Y ++ G
Sbjct: 349 RVME-EKGFSPNTMIYSTFIDGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFG 407
Query: 290 CREYILAGKTVMGMTERGFI 309
A + M ERG+I
Sbjct: 408 ANRMDEAHRLYREMGERGYI 427
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + GC+P Q L + + + + M+ G+ P+ + +
Sbjct: 309 ALEVTAGMVDKGCIPTLQTYNALIMGFFKAN-EVDKALQLFRVMEEKGFSPNTMIYSTFI 367
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
LC + ++ EA + + CVPD +Y+ +I + A + ++A + +EM
Sbjct: 368 DGLCKVGKINEAHEFFQQSVERGCVPDNVTYNALIRGLFGANRMDEAHRLYREM 421
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 47/209 (22%), Positives = 85/209 (40%), Gaps = 40/209 (19%)
Query: 151 QSQSVADILLEM--KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+++ ++++ EM KS+ PD T L+S LC ++ +A KV M E VP+L+
Sbjct: 130 KTREASEVVGEMIKKSV---PDGMTYTALISVLCKHNRADDAMKVFDIMVEKEIVPNLDV 186
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVL--------NMGLM-------PRQGMVIKVAAALR 253
Y+ ++ A RK + A + EM+ GL+ R + + +++R
Sbjct: 187 YTSLLAAHCRTRKLDGAYRLFVEMIQRGYGPSASTYGLLLRCLCNGGRSYLAYDIHSSMR 246
Query: 254 --------------------ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
A R V E LE + + Y V++EG +
Sbjct: 247 SRGHVPDENTYASLIYGCCMAGRITEAKVLFKEVLEGEKALLDAGIYNVLIEGLCRASKV 306
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + GM ++G IP ++ ++ G
Sbjct: 307 EEALEVTAGMVDKGCIPTLQTYNALIMGF 335
>gi|255565671|ref|XP_002523825.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223536913|gb|EEF38551.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 528
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/200 (25%), Positives = 87/200 (43%), Gaps = 15/200 (7%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R ++QS D L + + PD LV C + EA +V M A C+P++
Sbjct: 227 RATEAQSFFDSLKD----KFEPDVIVYTNLVRGWCRAGNIPEAERVFTEMKVAGCMPNVY 282
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW---KAVEM 264
+Y+IVI A+ + A ++ EM L++G P I LR + + K +++
Sbjct: 283 TYTIVIDALCRCGQITRAHDVFAEM-LDVGCEPNS---ITFNNLLRVHVKAGRTEKVLQV 338
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
++R GCP Y ++E C++ L A K + M ++G P + +
Sbjct: 339 YNQMKRMGCPPDTVTYNFLIES--HCKDGNLDEALKVLNSMVKKGCSPNASTFNGLFGSI 396
Query: 323 AGVGEWKLATVVRQRFAELK 342
A + + A + + ELK
Sbjct: 397 AKLRDVNGAHRLYAKMKELK 416
>gi|218186396|gb|EEC68823.1| hypothetical protein OsI_37392 [Oryza sativa Indica Group]
Length = 1370
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/185 (22%), Positives = 79/185 (42%), Gaps = 15/185 (8%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL ++ + + + LEM+ G+ P+ N ++ +LC +A +LK M ++ C P
Sbjct: 1040 WLGKKGDLEKIGSLFLEMRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDP 1099
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE- 263
D+ +++ ++ + A ++E + L P Q + E+ A +
Sbjct: 1100 DIITFNTLMTGLCHEGHVRKAEHFLREAI-RRELNPNQLSYTPLIHGFCMRGELMVASDL 1158
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQK 317
++E + R P +VV G L ++AGK MTER P + +
Sbjct: 1159 LVEMMGRGHTP------DVVTFGAL-IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNV 1211
Query: 318 VVEGL 322
++ GL
Sbjct: 1212 LISGL 1216
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+D+L+EM G+ PD T L+ L ++ EA V + M+ + PD+ Y+++I
Sbjct: 1156 SDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 1215
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CP 274
+ R A +++EM L + P + + + + + A ++ EF+E KG CP
Sbjct: 1216 LCKKRMLPAAKNILEEM-LEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 1274
>gi|297738031|emb|CBI27232.3| unnamed protein product [Vitis vinifera]
Length = 660
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/214 (23%), Positives = 92/214 (42%), Gaps = 8/214 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+++L R + S CVP L + L ++ +S +L ++ G+H + +
Sbjct: 309 LDKAVSLLDRMVASKCVPNDVTYGTLING-LVKQGRSVDGVHLLSSLEERGHHANEYAYS 367
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+S L ++ EA + K M C P++ YS +I + K ++A E++ EMV N
Sbjct: 368 TLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGKLDEAKEILCEMV-N 426
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE---CRE 292
G P + KA+ + + + + C Y V++ G E RE
Sbjct: 427 KGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAKNNCVPNEICYSVLIHGLCEDGKLRE 486
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ ++G RG P + ++ GL G
Sbjct: 487 AMMMWTHMLG---RGLRPDVVAYSSMIHGLCNAG 517
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 71/170 (41%), Gaps = 1/170 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM+ G P T N L++ LC +V K++ M CVP+ +Y+ +I +
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLINGLCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGLC 304
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + AV ++ MV + +P + L V ++ LE +G
Sbjct: 305 LKGKLDKAVSLLDRMVASK-CVPNDVTYGTLINGLVKQGRSVDGVHLLSSLEERGHHANE 363
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G + + A M E+G P I V +++GL G+
Sbjct: 364 YAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGLCREGK 413
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 57/281 (20%), Positives = 115/281 (40%), Gaps = 7/281 (2%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLR-PRSRPKIAYDYLLSYTLQSLHPLPLALA 121
+PN SF ++ ++D +E F + + P + L L + A+
Sbjct: 185 SPNVLSFNLVIKAMCKLGLVDRAIEVFREMAIQKCEPDVFTYCTLMDGLCKEDRIDEAVL 244
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L GC P +L + L ++ V ++ M G P+ T N +++ L
Sbjct: 245 LLDEMQIEGCFPSSVTFNVLING-LCKKGDMVRVTKLVDNMFLKGCVPNEVTYNTIINGL 303
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L +A +L M +++CVP+ +Y +I + ++ D V ++ + G
Sbjct: 304 CLKGKLDKAVSLLDRMVASKCVPNDVTYGTLINGLVKQGRSVDGVHLLSSLE-ERGHHAN 362
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKT 299
+ + + L + +A+ + + + KGC Y +++G CRE L A +
Sbjct: 363 EYAYSTLISGLFKEEKSEEAMGLWKKMVEKGCQPNIVVYSALIDGL--CREGKLDEAKEI 420
Query: 300 VMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ M +G P +++G G + A V + A+
Sbjct: 421 LCEMVNKGCTPNAFTYSSLIKGFFKTGNSQKAIRVWKEMAK 461
>gi|115451461|ref|NP_001049331.1| Os03g0208600 [Oryza sativa Japonica Group]
gi|26006498|gb|AAN77307.1| Hypothetical protein [Oryza sativa Japonica Group]
gi|108706773|gb|ABF94568.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
gi|113547802|dbj|BAF11245.1| Os03g0208600 [Oryza sativa Japonica Group]
Length = 531
Score = 51.6 bits (122), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ ++ ++ C+++ V + +L EM+ PD T L+ L I Q +A +LK
Sbjct: 251 LVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLK 310
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C PD+ +Y+ I A++ DA +M+EM + GLMP
Sbjct: 311 EMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMA-SKGLMPNATTYNLFFRCYYWA 369
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ A ++ E + +GC Q +V C A + M GF + V
Sbjct: 370 YDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVS 429
Query: 316 QKVVEGLAGVGE 327
+ + L G+
Sbjct: 430 DVLFDLLCDEGK 441
Score = 43.9 bits (102), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S W ++ + EM+ +G PD T N L+ C + A K+L M
Sbjct: 224 ILLSGWK----SAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMRE 279
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ PD+ +Y+ +IG + + + A ++KEM
Sbjct: 280 KDISPDVITYTSLIGGLGLIGQPDKAKHLLKEM 312
>gi|343887304|dbj|BAK61850.1| PPR containing protein [Citrus unshiu]
Length = 567
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 63/129 (48%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M+ G+ + T ++ LC + + +A L+ + A PD++SY +VI
Sbjct: 319 LMAKMRLNGFKDNVSTHKSMLKGLCVVGKFDQAVGYLRNVMEANMNPDVKSYEVVINGFC 378
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K+++A+ ++KEM GL P V L N E+ +A+ +++ + + C F
Sbjct: 379 KIGKSDEAISLLKEMRAR-GLKPTVFSFNAVFRILVENGELDRAILLLKQMPQMDCLPNF 437
Query: 278 QGYEVVVEG 286
Y ++ G
Sbjct: 438 VSYNTIICG 446
>gi|218194637|gb|EEC77064.1| hypothetical protein OsI_15455 [Oryza sativa Indica Group]
Length = 864
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/141 (24%), Positives = 67/141 (47%), Gaps = 3/141 (2%)
Query: 94 PRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
PR P + Y +L + +H L LAI+ R L++G P L+ + +
Sbjct: 149 PRHSPPTIHTYNILIDCYRRVHRPDLGLAIVGRLLKNGLGPDDFSYSLIYG--FVKDGEV 206
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ LEM G P CN ++ LC + ++ +A +++ M + PDL +YS++
Sbjct: 207 DKAHCLFLEMMEQGVLPKILICNSIIKELCKMKEMDKAESIVQKMVDSGIAPDLFTYSLI 266
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
I + ++ + A ++++MV
Sbjct: 267 IDGLCKSKAMDKAERVLEQMV 287
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 69/164 (42%), Gaps = 8/164 (4%)
Query: 132 VPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
+P P ++ S+ + C+ VA DI+ M G P+ T N L+ C + +
Sbjct: 503 IPPPGVKYF--SSIINNLCKEGRVAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNME 560
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
EA +L M+S P+ Y ++ + +DA+ + ++M L+ G+ P + +
Sbjct: 561 EAFALLDAMASIGIEPNCYIYGTLVDGYCKNGRIDDALTVFRDM-LHKGVKPTSVLYSII 619
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L R A +M + G + Y VV+ G CR
Sbjct: 620 LHGLFQARRTTAAKKMFHEMIESGTTVSIHTYGVVLGGL--CRN 661
Score = 44.3 bits (103), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 42/191 (21%), Positives = 86/191 (45%), Gaps = 6/191 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
V +I M + G P+ N L+++ + +A + + M + +PD +++ VI
Sbjct: 385 DVHNIFNLMLTKGIAPNKHVFNILINAYARCGMMDKAMLIFEDMQNKGMIPDTVTFATVI 444
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKG 272
++ + +DA+ MV ++G+ P + + + + E+ KA E+I E + +
Sbjct: 445 SSLCRIGRLDDALHKFNHMV-DIGVPPSEAVYGCLIQGCCNHGELVKAKELISEMMNKDI 503
Query: 273 CPIGFQGYEVVVEG-CLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKL 330
P G + + ++ C E R + GK +M M + G P + ++EG VG +
Sbjct: 504 PPPGVKYFSSIINNLCKEGR--VAEGKDIMDMMVQTGQRPNVVTFNSLMEGYCLVGNMEE 561
Query: 331 ATVVRQRFAEL 341
A + A +
Sbjct: 562 AFALLDAMASI 572
Score = 40.8 bits (94), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 32/119 (26%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +I+Q+ + SG P L S ++ C+S+++ +L +M G P+ T N
Sbjct: 244 AESIVQKMVDSGIAP----DLFTYSLIIDGLCKSKAMDKAERVLEQMVEAGTRPNSITYN 299
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ E+ +V K MSS +P +++ + I A+ +TN+A + MVL
Sbjct: 300 SLIHGYSISGMWNESVRVFKQMSSCGVIPTVDNCNSFIHALFKHGRTNEAKCIFDSMVL 358
>gi|449447683|ref|XP_004141597.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R+ + +S ++L M+ G P N L++ L + + ++ + M E +
Sbjct: 159 LSRKNKVRSALELLRSMQLAGLLPSLHALNSLLACLLRNELFADGLRIFEFMKLNE-LST 217
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEM 264
+YS+V+ A++ A A+EM K L +V ++ W +A
Sbjct: 218 GHTYSLVLKAVANAHGFLSALEMFKAWEHQCVLAQFDAIVYNTMISICGKDNNWVEAERT 277
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E+ GC Y ++V + C + LA T + M + F P Q ++ +
Sbjct: 278 WRLMEKNGCSATRITYSLLVSTFVRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSK 337
Query: 325 VGEWKLATVVRQ 336
G+W A V Q
Sbjct: 338 EGKWDFALRVFQ 349
Score = 40.8 bits (94), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M G P+ + N L+++L ++ A V M S PD+ +++ ++GA+
Sbjct: 347 VFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALY 406
Query: 218 TARKTNDAV---EMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGC 273
A + +DA+ E +K + + + +++ + +W +AV+++ +E G
Sbjct: 407 KANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKL-----GLWERAVQILWEMEVSGL 461
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
I Y +V+ C R+ +A + M + P
Sbjct: 462 SISTSSYNIVMTACEMARKPEIALQVYERMVHQKHTP 498
>gi|297849642|ref|XP_002892702.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
gi|297338544|gb|EFH68961.1| hypothetical protein ARALYDRAFT_471420 [Arabidopsis lyrata subsp.
lyrata]
Length = 667
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/181 (20%), Positives = 79/181 (43%), Gaps = 1/181 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++ G T N LV LC + + ++LK M+S + +P++ +++++I
Sbjct: 230 EMETKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNVITFNVLIDVFVKEG 289
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A E+ KEM+ G+ P + + +A M++ + R C +
Sbjct: 290 KLQEANELYKEMITK-GISPNTITYNSLMDGYCMQNRLSEANNMLDLMVRNNCSPDIVTF 348
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+++G + + K +++RG + +V+G G+ ++A + Q
Sbjct: 349 TSLIKGYCKVKRVDEGMKLFRKISKRGLVANTVTYSILVQGFCQSGKLEIAEELFQEMVS 408
Query: 341 L 341
L
Sbjct: 409 L 409
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 34/165 (20%), Positives = 77/165 (46%), Gaps = 1/165 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C++ +L ++ +GY PD T N L++ LC ++ EA ++ M C P++
Sbjct: 112 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLESKVSEAVVLVARMVENGCQPNVV 171
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ ++ + + T+ A++++++M + + +L + + A+ + +
Sbjct: 172 TYNSIVNGICKSGDTSLALDLLRKMD-ERNVKADVFTYSTIIDSLCRDGCIDAAISLFKE 230
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+E KG Y +V G + ++ + + MT R IP +
Sbjct: 231 METKGIKSSLVTYNSLVGGLCKAGKWNDGVQLLKDMTSRKIIPNV 275
>gi|297745184|emb|CBI39176.3| unnamed protein product [Vitis vinifera]
Length = 996
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM S G+ PD T + ++ LC ++ A + + M S VPD+ +Y+I+I +
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + EMV + G P + A R+M A E+ E + +GC
Sbjct: 527 KVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNV 585
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++G + + A + M IP + + K+ +G
Sbjct: 586 VTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +I++ + G +P S + C + V + L EMKS PD T
Sbjct: 464 AYSIIREMMSKGFIPDTSTY----SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ S C + L +A K M C P++ +Y+ +I A ARK + A E+ EM+L+
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF-EMMLS 578
Query: 236 MGLMP-------------RQGMVIK---VAAALRANREMWKAVEMIEFLERKGC--PIGF 277
G +P + G + K + A +R N ++ V+M ++ P F
Sbjct: 579 EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDVDMYFKIDDGNIRDPNIF 637
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +V+G + + A + M+ G P V +++G VG+ A +V +
Sbjct: 638 T-YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696
Query: 338 FAE 340
+E
Sbjct: 697 MSE 699
Score = 47.4 bits (111), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 8/212 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPD 170
H + A +L GC P ++ A ++ C+ + + + +M GY P+
Sbjct: 650 HKVKEARDLLDVMSVEGCEP----NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ L +L A KVL M C P++ Y+ +I + KT++A +M
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM- 764
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + ++ K +E++ + KGC F Y V++ C
Sbjct: 765 SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAA 824
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + + M + + ++ +KV+EG
Sbjct: 825 GLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856
Score = 46.2 bits (108), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L LC + +A +++ M S +PD +YS VIG + A K ++A + +EM N
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ I + + + + +A + + + R GC Y ++ L+ R+ A
Sbjct: 511 VVPDVFTYTILIDSFCKVGL-LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M G IP + +++G G+ + A + R
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYAR 610
Score = 44.3 bits (103), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 61/320 (19%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLP 117
E C+ PN + + ++ +DE F + R Y Y L L L
Sbjct: 665 EGCE-PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLD 723
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTC 174
LAL +L R L + C P +++ + ++ C+ + ++ M+ G HP+ T
Sbjct: 724 LALKVLSRMLENSCAP----NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
++ ++ + ++++ M + C P+ +Y ++I A +DA +++ EM
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM-- 837
Query: 235 NMGLMPRQGMVIKVAAALRA-----NREMWKAVEMI-EFLERKGCPIGFQGYEVVVE--- 285
+Q K A R NRE ++ ++ E E PI Y ++++
Sbjct: 838 ------KQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPI-IPAYRILIDSFC 890
Query: 286 --GCLE-----------CREYILAGKTVMG---------------------MTERGFIPY 311
G LE C Y A K + M +RG IP
Sbjct: 891 KAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950
Query: 312 IKVRQKVVEGLAGVGEWKLA 331
+ + +V+GL + W+ A
Sbjct: 951 LSIFFYLVKGLIRINRWEEA 970
Score = 39.3 bits (90), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCA 183
+ G + P I A ++ C++ V D+L M G P+ + L+ C
Sbjct: 626 IDDGNIRDPNI--FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCK 683
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ +L EA V MS P++ +YS +I + ++ + A++++ M+ N P
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVI 742
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ ++ L + +A ++ +E KGC Y +++G
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDG 785
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 71/163 (43%), Gaps = 14/163 (8%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPDCGTC 174
A+ L R S C+P V R+LL +R RC+ IL M + G +P
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKR-----ILSMMITEGCYPSRRIF 372
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TNDAVEMMKEM 232
N L+ + C A K+LK M C P Y+I+IG + K + D +E+ ++
Sbjct: 373 NSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEKLPSLDVLELAEKA 432
Query: 233 ---VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+L+ ++ + V +A L + KA +I + KG
Sbjct: 433 YGEMLDAHVVLNKVNVSNLARCLCGAGKFEKAYSIIREMMSKG 475
>gi|38567720|emb|CAE76009.1| B1358B12.18 [Oryza sativa Japonica Group]
gi|90265197|emb|CAH67636.1| B0812A04.6 [Oryza sativa Indica Group]
Length = 609
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S + I++EM+S G PD T L+ C ++L A ++ + M + D +Y+ +
Sbjct: 397 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 456
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S A ++ DA ++ EM + GL P V A ++ + +++ ++ KG
Sbjct: 457 ISGLSKAGRSADAERVLGEM-MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 515
Query: 273 CPIGFQGYEVVVEG 286
G Y V++ G
Sbjct: 516 RKPGVVTYNVIMNG 529
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/220 (21%), Positives = 87/220 (39%), Gaps = 2/220 (0%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
P A A + L +G P ++ +L L R + S ++ EM+S G + N
Sbjct: 222 PEACAFYLQLLDAGLPPEAKLFNVLMRD-LVRLGELASAQNVFDEMQSRGVRRTVVSFNT 280
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++S +C L A + + MS A PD+ +Y +I + + DA + ++M
Sbjct: 281 MISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMC-GR 339
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+ P + + A + +E+ + +G Y +V G R+ A
Sbjct: 340 GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 399
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
V+ M G P +++G E +A ++Q
Sbjct: 400 SGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQ 439
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ ++++ ++ EM+ G PD T N +V+ LC L A+ ++ M SA PD
Sbjct: 357 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTV 416
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMV 233
+Y+ +I + + A+E+ + MV
Sbjct: 417 TYTTLIDGYCKEEELDMAMEIKQNMV 442
>gi|224142151|ref|XP_002324422.1| predicted protein [Populus trichocarpa]
gi|222865856|gb|EEF02987.1| predicted protein [Populus trichocarpa]
Length = 453
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 53/107 (49%), Gaps = 1/107 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + + IL M+ G HP+ C ++S C+ ++ A KV + M P+L+
Sbjct: 340 RAGEPEKAESILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEIGVSPNLK 399
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+Y +I A++ A E+++ M G+ P++G + +A A RA
Sbjct: 400 TYETLIWGYGEAKQPLKAEELLQVME-EKGVFPKKGTMQLIADAWRA 445
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 35/176 (19%), Positives = 79/176 (44%), Gaps = 1/176 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ V ++L M+ G PD T + ++++ + ++ + ++ M AE PD+ ++S
Sbjct: 273 DTEGVDEVLTLMEENGVRPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFS 332
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+ A + A ++ M G+ P + V + + +M A+++ E +
Sbjct: 333 ILAKGYVRAGEPEKAESILTSM-RKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCE 391
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
G + YE ++ G E ++ + A + + M E+G P Q + + +G
Sbjct: 392 IGVSPNLKTYETLIWGYGEAKQPLKAEELLQVMEEKGVFPKKGTMQLIADAWRAIG 447
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 48/223 (21%), Positives = 90/223 (40%), Gaps = 2/223 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +I + G P L +A L R+ +S+ ++ +++ G PD N ++
Sbjct: 32 AHSIFNSLMDEGHKPTLITYTTLVAA-LTRQKLFKSILRLISKVEENGMKPDSILFNSII 90
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ + EA K+ + M + C P +++ +I A KT +A++++ E + + G+
Sbjct: 91 NAFSESGNMKEAMKLFRKMKESGCKPTTSTFNTLIKGYGNAGKTEEALKLL-EFLQDGGV 149
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P Q + A M +A M+ + G Y + E E I A +
Sbjct: 150 KPNQRTYNILVRAWCNKENMEEAWNMVYKMVASGMQPDAVTYNTLARAYAEKGETIRAEE 209
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ M R P + +V G G A+ R EL
Sbjct: 210 MILEMLNRRVTPNERTCSIIVNGYCKEGNMVDASRFVFRMKEL 252
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 43/223 (19%), Positives = 93/223 (41%), Gaps = 2/223 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A ++ + + SG P L+ A+ E+ ++ +++LEM + P+ TC+ +V
Sbjct: 172 AWNMVYKMVASGMQPDAVTYNTLARAYAEK-GETIRAEEMILEMLNRRVTPNERTCSIIV 230
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C +V+A++ + M +P+L ++ +I T E++ M N G+
Sbjct: 231 NGYCKEGNMVDASRFVFRMKELGVLPNLFVFNSLIKGFLDTMDTEGVDEVLTLMEEN-GV 289
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + A + M K E+ + + + ++ +G + E A
Sbjct: 290 RPDVVTFSTIMNAWSSAGRMDKCKEIFNDMVKAEIEPDIHAFSILAKGYVRAGEPEKAES 349
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ M + G P + + V+ G G+ + A V ++ E+
Sbjct: 350 ILTSMRKYGVHPNVVICTTVISGWCSAGKMEHAMKVYEKMCEI 392
>gi|222624423|gb|EEE58555.1| hypothetical protein OsJ_09859 [Oryza sativa Japonica Group]
Length = 858
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 80/192 (41%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ ++ ++ C+++ V + +L EM+ PD T L+ L I Q +A +LK
Sbjct: 251 LVTYNSLIDCHCKNRGVENAYKLLDEMREKDISPDVITYTSLIGGLGLIGQPDKAKHLLK 310
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M C PD+ +Y+ I A++ DA +M+EM + GLMP
Sbjct: 311 EMHELGCYPDVPAYNTAIRNFVIAKRLGDAFALMEEMA-SKGLMPNATTYNLFFRCYYWA 369
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ A ++ E + +GC Q +V C A + M GF + V
Sbjct: 370 YDIGSAWQLYERMRSEGCFPNTQSCMFIVRLCHRHGRVAQALELWSDMVNNGFGSFTLVS 429
Query: 316 QKVVEGLAGVGE 327
+ + L G+
Sbjct: 430 DVLFDLLCDEGK 441
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/93 (26%), Positives = 44/93 (47%), Gaps = 4/93 (4%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L S W ++ + EM+ +G PD T N L+ C + A K+L M
Sbjct: 224 ILLSGWK----SAEDAEAFVAEMRELGVEPDLVTYNSLIDCHCKNRGVENAYKLLDEMRE 279
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+ PD+ +Y+ +IG + + + A ++KEM
Sbjct: 280 KDISPDVITYTSLIGGLGLIGQPDKAKHLLKEM 312
>gi|224107129|ref|XP_002314384.1| predicted protein [Populus trichocarpa]
gi|222863424|gb|EEF00555.1| predicted protein [Populus trichocarpa]
Length = 764
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 50/224 (22%), Positives = 95/224 (42%), Gaps = 8/224 (3%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
+ + +RSGC P L+L + +++ + +++ + E+K+ G+ PD + + L+
Sbjct: 397 MYKEMMRSGCSP----DLMLLNTYMDCVFKAGETEKGRALFEEIKARGFLPDTRSYSILI 452
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SL E ++ M CV D +Y+ VI + K N A ++++EM MG
Sbjct: 453 HSLVKAGFARETYELYYAMKDQGCVLDTRAYNTVIDGFCKSGKVNKAYQLLEEMK-TMGH 511
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P V L + +A + E + G + Y +++G + A
Sbjct: 512 HPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQVIYSSLIDGFGKVGRVDEAYL 571
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ M ++G P + +++GL E A V Q +LK
Sbjct: 572 VMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLK 615
Score = 47.0 bits (110), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 84/192 (43%), Gaps = 4/192 (2%)
Query: 150 CQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S V +L EMK++G+HP T +V L ID+L EA + + S +
Sbjct: 491 CKSGKVNKAYQLLEEMKTMGHHPTVVTYGSVVDGLAKIDRLDEAYMLFEEAKSNGIELNQ 550
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + ++A +M+EM + GL P + L E+ +A+ +
Sbjct: 551 VIYSSLIDGFGKVGRVDEAYLVMEEM-MQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQ 609
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ C Y +++ G + R++ A M ++G P ++ GLA G
Sbjct: 610 SMKDLKCTPNQITYCILINGLCKVRKFNKAFVFWQEMQKQGLKPNTITYTAMISGLAKSG 669
Query: 327 EWKLATVVRQRF 338
A+ + +RF
Sbjct: 670 NVAQASSLFERF 681
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 54/129 (41%), Gaps = 1/129 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ EM G P+ T N L+ L +++ EA + M +C P+ +Y I+I +
Sbjct: 572 VMEEMMQKGLTPNVYTWNCLLDGLVKAEEINEALVCFQSMKDLKCTPNQITYCILINGLC 631
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
RK N A +EM GL P + + L + + +A + E G
Sbjct: 632 KVRKFNKAFVFWQEM-QKQGLKPNTITYTAMISGLAKSGNVAQASSLFERFRASGGIPDS 690
Query: 278 QGYEVVVEG 286
Y ++EG
Sbjct: 691 ASYNAMIEG 699
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 30/134 (22%), Positives = 58/134 (43%), Gaps = 3/134 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+AY+ +L+ L AL I + R +P +++ L + ++ +
Sbjct: 237 VAYNCILT-CLGKKGKTDKALRIFEEMKRDAMPNLPTYNIII--GMLCKAGNVEAAFKVR 293
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
MK G P+ T N ++ LC +L EA + +GM C PD ++ +I +
Sbjct: 294 DAMKEAGLFPNVRTINIMIDRLCKAQKLDEACSIFEGMDYKVCSPDGATFCSLIDGLGKQ 353
Query: 220 RKTNDAVEMMKEMV 233
+ +DA + + M+
Sbjct: 354 GRVDDAYRIYERML 367
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 40/75 (53%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM G+ P TC LV+S +L+EA +L+ M + P +Y+ +IGA+S
Sbjct: 13 ILGEMSIAGFGPTNYTCVELVASCVKSRKLIEAFDLLQMMRHFKFRPAFSAYTTLIGALS 72
Query: 218 TARKTNDAVEMMKEM 232
+++ + + +M
Sbjct: 73 EVGESDRMLALFNQM 87
>gi|357442157|ref|XP_003591356.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355480404|gb|AES61607.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 518
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSL 181
+L+ P Q +L S W ++V D L EMK +G PD T N LV
Sbjct: 189 HSLKHNFRPNLQTFNILLSGW-------KNVEDAELFVNEMKEMGVEPDVVTYNSLVDVY 241
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C ++ +A KV M + PD+ +Y+ VIG + + + A +++KEM
Sbjct: 242 CKGREIEKAYKVFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEM 292
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ EM+ PD T ++ L + Q +A VLK M PD+ +Y+ I
Sbjct: 253 VFDEMREKDLSPDVITYTSVIGGLGLVGQPDKARDVLKEMKEYGVYPDVPAYNAAIRNYC 312
Query: 218 TARKTNDAVEMMKEMVLNMGLMP 240
A++ A E++ EMV N GL P
Sbjct: 313 IAKRLGIAFELVDEMV-NKGLSP 334
>gi|4455203|emb|CAB36526.1| putative protein [Arabidopsis thaliana]
gi|7269532|emb|CAB79535.1| putative protein [Arabidopsis thaliana]
Length = 439
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 139 LLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+++ V ++L MK G P+ T + L++ LC +L +A + L
Sbjct: 118 VVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLH 177
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S + P++ ++S +I A + K + V+ + +M++ M + P + L +
Sbjct: 178 EMDSKKINPNVITFSALIDAYAKRGKLS-KVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 236
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC------------------------- 290
+ +A++M++ + KGC Y + G +
Sbjct: 237 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 296
Query: 291 ----REYILAGKT-----VMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y AGK V G MT G IP I+ V+ GL GE + A
Sbjct: 297 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 347
>gi|356510681|ref|XP_003524064.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18390,
mitochondrial-like [Glycine max]
Length = 450
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 45/201 (22%), Positives = 85/201 (42%), Gaps = 16/201 (7%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
LL++ ++E S ++ M G PD GT N +V ++ E + G+
Sbjct: 254 LLNAGYVE------SAKGMVRNMIKQGSVPDVGTFNAVVETVSK-----EDVQFCVGLYH 302
Query: 200 AECV----PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
C PD+ +Y I++ A+S + ++A ++ + + G P + V AL
Sbjct: 303 EVCALGMAPDVNTYKILVPAVSKSGMVDEAFRLLNNFIED-GHKPFPSLYAPVIKALCRR 361
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ A ++ K P Y +++ C +++ A + MTE G +P +
Sbjct: 362 GQFDDAFCFFGDMKAKAHPPNRPLYTMLITMCGRAGKFVEAANYIFEMTEMGLVPISRCF 421
Query: 316 QKVVEGLAGVGEWKLATVVRQ 336
V +GL G+ LA V++
Sbjct: 422 DMVTDGLKNCGKHDLARRVQE 442
>gi|15227316|ref|NP_179280.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75217061|sp|Q9ZVX5.1|PP156_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g16880
gi|3757517|gb|AAC64219.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|18175643|gb|AAL59902.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|20465657|gb|AAM20297.1| putative salt-inducible protein [Arabidopsis thaliana]
gi|330251452|gb|AEC06546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 743
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 114/261 (43%), Gaps = 14/261 (5%)
Query: 71 SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
S+F + +V D+M++ + L ++ + Y L L+ AL +L+R +
Sbjct: 181 SSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLED------ALGMLERMVSEF 234
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
V + + ++ + + ++LL+MK G P+ T N LV C + L EA
Sbjct: 235 KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEA 294
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
++++ M +PDL +Y+I+I + A + +E+M M ++ L P V+
Sbjct: 295 FQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK-SLKLQPD---VVTYNT 350
Query: 251 ALRANREMWKAVE---MIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTER 306
+ E+ ++E ++E +E G + + ++ C E + + K +
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMH 410
Query: 307 GFIPYIKVRQKVVEGLAGVGE 327
GF P I +++ VG+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGD 431
>gi|297847728|ref|XP_002891745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297337587|gb|EFH68004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 472
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/165 (23%), Positives = 74/165 (44%), Gaps = 1/165 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + L+SSL + E +++L+ MS C PD +Y+++I + A ++
Sbjct: 257 DSAIYSTLISSLIKAGRSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVL 316
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
EMV GL P + L ++ +A + E + R+GC Y +V +G E
Sbjct: 317 DEMV-EKGLKPDVISYNMILGVLFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCE 375
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ A + M +G+ P ++ ++ L G+ ++ + V
Sbjct: 376 GLQFEEAAAILDEMLFKGYKPRRDRLERFLQKLCESGKLEILSKV 420
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 46/93 (49%), Gaps = 7/93 (7%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+S V+ IL EM G PD T N L++ C + A +VL M PD+ SY+
Sbjct: 273 RSNEVSRILEEMSEKGCKPDTVTYNVLINGFCVENDSESAYRVLDEMVEKGLKPDVISYN 332
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+++G + +K +A + ++ MPR+G
Sbjct: 333 MILGVLFRIQKWEEATYLFED-------MPRRG 358
Score = 44.7 bits (104), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 54/122 (44%), Gaps = 4/122 (3%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
IL+ GC P +L++ +E S+S +L EM G PD + N ++
Sbjct: 280 ILEEMSEKGCKPDTVTYNVLINGFCVEN--DSESAYRVLDEMVEKGLKPDVISYNMILGV 337
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
L I + EA + + M C PD SY IV + + +A ++ EM+ G P
Sbjct: 338 LFRIQKWEEATYLFEDMPRRGCSPDTLSYRIVFDGLCEGLQFEEAAAILDEMLFK-GYKP 396
Query: 241 RQ 242
R+
Sbjct: 397 RR 398
>gi|297819626|ref|XP_002877696.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297323534|gb|EFH53955.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 1188
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 73/171 (42%), Gaps = 2/171 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQ-LVEAAKVLKGMSSAECVPDLESYSIVIGA 215
D+L +M+ GY P+ L+ +LC ++ + EA +V M C D+ +Y+ +I
Sbjct: 295 DLLNDMRKRGYEPNANCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISG 354
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
+ ++ +M G+MP Q +++ A + + +E+IE +++ GC
Sbjct: 355 FCKWGMIDKGYSVLDDM-RKKGVMPSQVTYMQILVAHEKKEQFEECLELIEKMKQIGCHP 413
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VV+ RE A + M G P + ++ G G
Sbjct: 414 DLLIYNVVIRLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQG 464
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 43/229 (18%), Positives = 99/229 (43%), Gaps = 10/229 (4%)
Query: 121 AILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
++L + G +P V +++L++ E++ Q + +++ +MK IG HPD N ++
Sbjct: 366 SVLDDMRKKGVMPSQVTYMQILVAH---EKKEQFEECLELIEKMKQIGCHPDLLIYNVVI 422
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C ++ EA ++ M + P + + I+I ++ +A KEMV + G+
Sbjct: 423 RLACNFREVKEAVRLWNEMEANGLSPGADMFVIMINGFTSQGYLIEACSHFKEMV-SRGI 481
Query: 239 M--PRQGMVIKVAAALRANREMWKAVEMIEFLERK--GCPIGFQGYEVVVEGCLECREYI 294
P+ G + + L + ++ A ++ + K C + + + +
Sbjct: 482 FSAPQYGTLKSLLNTLLRDDKLEMAKDVWSCISNKTSSCELNVSAWTIWIHALFAKGHVK 541
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
A + M E +P K+++GL + +A + ++ ++ S
Sbjct: 542 EACSYCLDMMEMDLMPQPNTYVKLMKGLNKLYNRTIAAEITEKVMKMAS 590
>gi|297807861|ref|XP_002871814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297317651|gb|EFH48073.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 459
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 51/258 (19%), Positives = 100/258 (38%), Gaps = 35/258 (13%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+++R +R G P + +L + W + + + L EM G++P + L+
Sbjct: 201 AYALIRRMIRKGLKPDKRTYAILVNGWCSA-GKMKEAQEFLDEMSRKGFNPPARGRDLLI 259
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK-------- 230
L L A +++ M+ VPD+ +++ +I A+S + + +EM
Sbjct: 260 EGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGEVEFCIEMYYTACKLGLC 319
Query: 231 -EMVLNMGLMPRQGMVIKVAAALR-------------------------ANREMWKAVEM 264
++ L+P + K+ A R N A
Sbjct: 320 VDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSF 379
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ K P Y +++ C +++ A ++ MTE G +P + V +GL
Sbjct: 380 FSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKN 439
Query: 325 VGEWKLATVVRQRFAELK 342
G+ LA + Q +L+
Sbjct: 440 SGKHDLAMRIEQLEVQLR 457
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 37/176 (21%), Positives = 82/176 (46%), Gaps = 2/176 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSI 211
+S+ IL +MK + T +++ + +A ++ G+ + C ++ Y+
Sbjct: 128 ESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNA 187
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
++ A+ + + A +++ M+ GL P + + + +M +A E ++ + RK
Sbjct: 188 LLHALCDVKMFHGAYALIRRMI-RKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRK 246
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G +G ++++EG L A + V MT+ GF+P I ++E ++ GE
Sbjct: 247 GFNPPARGRDLLIEGLLNAGYLESAKEIVDKMTKGGFVPDILTFNTLIEAISKSGE 302
>gi|115444031|ref|NP_001045795.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|41052573|dbj|BAD07755.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113535326|dbj|BAF07709.1| Os02g0132100 [Oryza sativa Japonica Group]
gi|125537962|gb|EAY84357.1| hypothetical protein OsI_05732 [Oryza sativa Indica Group]
gi|125580699|gb|EAZ21630.1| hypothetical protein OsJ_05259 [Oryza sativa Japonica Group]
Length = 871
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 93/230 (40%), Gaps = 29/230 (12%)
Query: 122 ILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLE-MKSIGYHPDCGTCNYLVS 179
IL + GC P +LL S W R + A+ LLE M GY D +CN ++
Sbjct: 413 ILDEMAQKGCAPNSFTYNVLLQSLWKAGRI---TEAERLLERMSEKGYSLDTASCNIIID 469
Query: 180 SLCAIDQLVEAAKVLKGM-----------------------SSAECVPDLESYSIVIGAM 216
LC ++L A ++ GM SS C+PD +YS ++ A+
Sbjct: 470 GLCRNNKLDMAMDIVDGMWNEGSLALGRLGYSFLSLLTDSSSSKRCLPDRITYSTLVSAL 529
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++A + + EM+ + P + + + AV+++ +E+KGC
Sbjct: 530 CKEGRFDEAKKKLLEMI-GKDISPDSVLYDTFIHGYCKHGKTSLAVKVLRDMEKKGCKPS 588
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y +++ G E K + M +G P + +++ G
Sbjct: 589 TRTYNLLIWGFREKHNSDEILKLISEMKGKGICPNVMTYNSLIKSFCERG 638
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 53/107 (49%), Gaps = 4/107 (3%)
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
LA+ +L+ + GC P + LL + E+ S + ++ EMK G P+ T N L
Sbjct: 572 LAVKVLRDMEKKGCKPSTRTYNLLIWGFREKH-NSDEILKLISEMKGKGICPNVMTYNSL 630
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+ S C + +A +L M E VP++ S+ ++I A KT+D
Sbjct: 631 IKSFCERGMVNKAMPLLDEMLQNEIVPNITSFELLIKAFC---KTSD 674
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 33/151 (21%), Positives = 62/151 (41%), Gaps = 1/151 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM G P+ T N +V LC + + KV + S PD+ +Y+ ++ A
Sbjct: 342 ELLREMAHEGVQPNSYTYNIIVDGLCKEGKAFDVRKVEDFVKSGVMTPDVVTYTSLLHAY 401
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ A ++ EM G P + +L + +A ++E + KG +
Sbjct: 402 CSEGNAAAANRILDEMA-QKGCAPNSFTYNVLLQSLWKAGRITEAERLLERMSEKGYSLD 460
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERG 307
++++G + +A V GM G
Sbjct: 461 TASCNIIIDGLCRNNKLDMAMDIVDGMWNEG 491
>gi|357449161|ref|XP_003594857.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355483905|gb|AES65108.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 647
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 63/122 (51%), Gaps = 2/122 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ + N ++ +LC + + +A +V +GMS CV D +YS ++ + + ++AV +
Sbjct: 173 PNGLSFNLVIKALCRVGNVDQAVEVFRGMSDRNCVADGYTYSTLMHGLCNEGRIDEAVSL 232
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-C 287
+ EM + G P + +AL ++ +A ++++ + KGC Y +V G C
Sbjct: 233 LDEMQVE-GTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLC 291
Query: 288 LE 289
L+
Sbjct: 292 LK 293
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 13/176 (7%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM+ G P+ N L+S+LC L A+K++ M CVP+ +Y+ ++ +
Sbjct: 232 LLDEMQVEGTFPNPVAFNVLISALCKKGDLSRASKLVDNMFLKGCVPNEVTYNSLVHGLC 291
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K + A+ ++ MV N + V ++ R + V ++ LE KG
Sbjct: 292 LKGKLDKAMSLLNRMVANKCVPNDITFGTLVDGFVKHGRAL-DGVRVLVSLEEKGYRGNE 350
Query: 278 QGYEVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G + GK G M E+G P V +++GL G+
Sbjct: 351 FSYSSLISGLFK------EGKGEHGMQLWKEMVEKGCKPNTIVYSALIDGLCREGK 400
>gi|225433790|ref|XP_002269080.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Vitis vinifera]
Length = 1045
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM S G+ PD T + ++ LC ++ A + + M S VPD+ +Y+I+I +
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + EMV + G P + A R+M A E+ E + +GC
Sbjct: 527 KVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNV 585
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++G + + A + M IP + + K+ +G
Sbjct: 586 VTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +I++ + G +P S + C + V + L EMKS PD T
Sbjct: 464 AYSIIREMMSKGFIPDTSTY----SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ S C + L +A K M C P++ +Y+ +I A ARK + A E+ EM+L+
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF-EMMLS 578
Query: 236 MGLMP-------------RQGMVIK---VAAALRANREMWKAVEMIEFLERKGC--PIGF 277
G +P + G + K + A +R N ++ V+M ++ P F
Sbjct: 579 EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDVDMYFKIDDGNIRDPNIF 637
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +V+G + + A + M+ G P V +++G VG+ A +V +
Sbjct: 638 T-YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696
Query: 338 FAE 340
+E
Sbjct: 697 MSE 699
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 8/212 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPD 170
H + A +L GC P ++ A ++ C+ + + + +M GY P+
Sbjct: 650 HKVKEARDLLDVMSVEGCEP----NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ L +L A KVL M C P++ Y+ +I + KT++A +M
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM- 764
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + ++ K +E++ + KGC F Y V++ C
Sbjct: 765 SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAA 824
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + + M + + ++ +KV+EG
Sbjct: 825 GLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L LC + +A +++ M S +PD +YS VIG + A K ++A + +EM N
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ I + + + + +A + + + R GC Y ++ L+ R+ A
Sbjct: 511 VVPDVFTYTILIDSFCKVGL-LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M G IP + +++G G+ + A + R
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYAR 610
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 66/320 (20%), Positives = 122/320 (38%), Gaps = 61/320 (19%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL-LSYTLQSLHPLP 117
E C+ PN + + ++ +DE F + R Y Y L L L
Sbjct: 665 EGCE-PNHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLD 723
Query: 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTC 174
LAL +L R L + C P +++ + ++ C+ + ++ M+ G HP+ T
Sbjct: 724 LALKVLSRMLENSCAP----NVIIYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTY 779
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
++ ++ + ++++ M + C P+ +Y ++I A +DA +++ EM
Sbjct: 780 TAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAAGLLDDAHQLLDEM-- 837
Query: 235 NMGLMPRQGMVIKVAAALRA-----NREMWKAVEMI-EFLERKGCPIGFQGYEVVVE--- 285
+Q K A R NRE ++ ++ E E PI Y ++++
Sbjct: 838 ------KQTYWPKHMAGYRKVIEGFNREFIISLGLLDEIAENVAVPI-IPAYRILIDSFC 890
Query: 286 --GCLE-----------CREYILAGKTVMG---------------------MTERGFIPY 311
G LE C Y A K + M +RG IP
Sbjct: 891 KAGRLELALELHKEMSSCTSYSAADKDLYSSLIESLSLASKVDKAFELYADMIKRGGIPE 950
Query: 312 IKVRQKVVEGLAGVGEWKLA 331
+ + +V+GL + W+ A
Sbjct: 951 LSIFFYLVKGLIRINRWEEA 970
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCA 183
+ G + P I A ++ C++ V D+L M G P+ + L+ C
Sbjct: 626 IDDGNIRDPNI--FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCK 683
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ +L EA V MS P++ +YS +I + ++ + A++++ M+ N P
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVI 742
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ ++ L + +A ++ +E KGC Y +++G
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDG 785
Score = 38.5 bits (88), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPDCGTC 174
A+ L R S C+P V R+LL +R RC+ IL M + G +P
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKR-----ILSMMITEGCYPSRRIF 372
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
N L+ + C A K+LK M C P Y+I+IG + K
Sbjct: 373 NSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419
>gi|223635763|sp|Q9LER0.2|PP381_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g14770, mitochondrial; Flags: Precursor
Length = 940
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ S+ + + +MKS G P +CN +V LC ++ EA +L M E P+L
Sbjct: 587 KQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLT 646
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y I + S+ K DA+ E +L+ G+ + + + A L KA ++
Sbjct: 647 TYRIFLDT-SSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGD 705
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E +G + ++ G A T M E G P + ++ GL+ G
Sbjct: 706 MEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAG- 764
Query: 328 WKLATVVRQRFAELKS 343
L V + +E+KS
Sbjct: 765 --LIKEVDKWLSEMKS 778
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ L+ + L ++ + +M G+ PD T + +++ LC +++E +
Sbjct: 224 ISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLL 283
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L+ M P+ +Y+ ++ ++ A A+ + +MV+
Sbjct: 284 LREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVV------------------- 324
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+G P+ Y V+++G + + A KT + E +P +
Sbjct: 325 -----------------RGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAE 340
+V+GL G+ A + + E
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLE 394
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V L EMKS G PD T N L+S I + + + M + VP +Y+++
Sbjct: 767 KEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVL 826
Query: 213 IGAMSTARKTNDAVEMMKEM 232
I + K A E++KEM
Sbjct: 827 ISEFANVGKMLQARELLKEM 846
>gi|413926925|gb|AFW66857.1| hypothetical protein ZEAMMB73_570381 [Zea mays]
Length = 487
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 78 RIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ ++E ++F + R I Y+ ++S L + A + Q +SG VP
Sbjct: 238 RLDYVNEAYQAFAEMTSRGIVPNNITYNSIIS-ALCKAGNMTEAFKLEQNMRQSGLVPDI 296
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L L R + + V ++LL+M S G PD T N ++++ C + A +
Sbjct: 297 YTSNILIDG-LCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMN 355
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
M A C PD+ +Y+I + ++ N A +++ E+V
Sbjct: 356 KMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGKLLDELV 393
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M+ G PD T N L+ LC +L +L M S PD +Y+ +I A A+
Sbjct: 286 NMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQ 345
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
N A+ M +M++ G P +L N + +A ++++ L C Y
Sbjct: 346 DMNSAMNFMNKMLV-AGCEPDIFTYNIWMHSLYRNHMLNQAGKLLDELVAVDCSPNSVTY 404
Query: 281 EVVVEG-CLEC--REYILAGKTV 300
+++G C + R IL G+ +
Sbjct: 405 NTLMDGICSDVLDRAMILTGRLI 427
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 136 QIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q + SA++ R + V + EM S G P+ T N ++S+LC + EA K
Sbjct: 223 QTDFIAFSAYINGRSRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFK 282
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVA 249
+ + M + VPD+ + +I+I + K ++M+ ++L+M GL P +
Sbjct: 283 LEQNMRQSGLVPDIYTSNILIDGLCREGK----LKMVDNLLLDMCSNGLTPDTVTYNTII 338
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
A ++M A+ + + GC Y + + AGK
Sbjct: 339 NAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGK 387
>gi|356549285|ref|XP_003543024.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g46100-like [Glycine max]
Length = 479
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 57/254 (22%), Positives = 112/254 (44%), Gaps = 9/254 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
I+V +M E F LRP + AY +L ++ H + A+ R +R +P +
Sbjct: 105 IRVFHKM-EGF-QLRPTQK---AYLTILDILVEENH-VKRAIGFY-REMRELGIPSSVVS 157
Query: 139 L-LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L +L A + + S I EM + G PD T L++ LC + + EA ++ K M
Sbjct: 158 LNILIKALCKNKETVDSALRIFQEMPNRGCQPDSYTYGTLINGLCRLGNISEAKELFKEM 217
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ +Y+ +I + + ++A+ +++EM N + P + L
Sbjct: 218 EQKGFSASVVTYTSLIHGLCQSNNLDEAIGLLEEMKRN-DIEPNVFTYSSLMDGLCKGGH 276
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+A++++E +++K Y ++ G + R+ A + + M +G P + K
Sbjct: 277 SSQAMQLLEVMDKKHHLPNMVTYSTLINGLCKERKLREAVEILDRMRIQGLKPNAGLYGK 336
Query: 318 VVEGLAGVGEWKLA 331
++ GL G ++ A
Sbjct: 337 IISGLCAAGSYQEA 350
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS ++ + +L EMK P+ T + L+ LC +A ++L+ M +P++
Sbjct: 237 CQSNNLDEAIGLLEEMKRNDIEPNVFTYSSLMDGLCKGGHSSQAMQLLEVMDKKHHLPNM 296
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YS +I + RK +AVE++ M + GL P G+ K+ + L A +A I+
Sbjct: 297 VTYSTLINGLCKERKLREAVEILDRMRIQ-GLKPNAGLYGKIISGLCAAGSYQEAANFID 355
>gi|225443946|ref|XP_002272135.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 733
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ + P+ T N L+ C + +L +A +++ M C PD SY V+G +
Sbjct: 226 FLERMQIVEIEPNVITYNCLIKGYCDLHRLEDAMELIAEMPFKGCSPDKISYYTVMGFLC 285
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + +M++M+ + L+P Q L + +A+E + E + +
Sbjct: 286 KEKRIKEVRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 345
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
GY +V CRE + A + V M +G IP + V+ GL
Sbjct: 346 VGYSAIVHSF--CREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGL 390
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/250 (20%), Positives = 105/250 (42%), Gaps = 6/250 (2%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
PN ++ + + HR++ E++ +P + S KI+Y ++ + + + L
Sbjct: 237 PNVITYNCLIKGYCDLHRLEDAMELIAE-MPFKGCSPDKISYYTVMGFLCKEKRIKEVRL 295
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++++ L+ + Q+ L + + L E + + D + +V S
Sbjct: 296 -LMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHS 354
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C ++ +A +++ M S C+PD+ +Y+ VI + RK + A +M+++M + G P
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKH-GCKP 413
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ L N +A EM+ E Y V++ G + A V
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEDWWIPNAITYSVLMHGFRREGKSSEACDLV 473
Query: 301 MGMTERGFIP 310
M ++GF P
Sbjct: 474 REMIKKGFFP 483
>gi|224125420|ref|XP_002329801.1| predicted protein [Populus trichocarpa]
gi|222870863|gb|EEF07994.1| predicted protein [Populus trichocarpa]
Length = 478
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/190 (23%), Positives = 83/190 (43%), Gaps = 9/190 (4%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C++ D I EM G PD T L++ LC + + EA ++ K M + C P
Sbjct: 166 CKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEMDTKGCSPS 225
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +YS ++ + A ++A+ + +M + P + L N +A+E++
Sbjct: 226 VVTYSCLMHGLCQAGNVDEAMGLFDKMK-KKAIEPNVFTYSSLMDGLCKNGGSLEAMELL 284
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAG--KTVMGMTERGFIPYIKVRQKVVEGLA 323
E + RK Y ++ G C+E LA +T+ M +G P + K++ G
Sbjct: 285 EMMVRKRHKPNMVTYSTLINGL--CKEGKLAEAVETLDRMKLQGLKPDAGLYGKIINGFC 342
Query: 324 GVGEWKLATV 333
+ +++ A
Sbjct: 343 NIRKFQEAAT 352
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ + M++ G D GT + LV C L +AA++ M CVPD +S V+G
Sbjct: 395 LYIGMRTRGISIDAGTFDSLVKCFCKKGDLHKAARIFDEMVLDGCVPDHGIWSAVVGGFW 454
Query: 218 TARKTNDA-----VEMMKEMV 233
RK +A VE+M E V
Sbjct: 455 DRRKVREAFESIVVELMNEFV 475
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 54/119 (45%), Gaps = 3/119 (2%)
Query: 116 LPL-ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
+PL A+ + + GC P + + + + +E Q + M+ +G +
Sbjct: 100 MPLDAIRVFHKMNDFGCKPTDKSYISVFAILVEEN-QLKVAMSFYKYMREMGVRQSVVSL 158
Query: 175 NYLVSSLCAIDQLVEAA-KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N L+ +LC ++AA ++ + M C PD +Y +I + KT +A E+ KEM
Sbjct: 159 NVLIKALCKNSGTIDAAFEIFREMPKRGCDPDSYTYGTLINGLCKLGKTFEAKELFKEM 217
>gi|357454671|ref|XP_003597616.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
gi|124360397|gb|ABN08410.1| Pentatricopeptide repeat [Medicago truncatula]
gi|355486664|gb|AES67867.1| hypothetical protein MTR_2g100200 [Medicago truncatula]
Length = 527
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/168 (23%), Positives = 76/168 (45%), Gaps = 7/168 (4%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D N ++ + +I K GM S C P++ +YS +I A RK DA+ M
Sbjct: 305 DTAIYNAMIFNFISIGDFDGFMKYYNGMLSDNCEPNIHTYSRMITAFLRTRKVADALLMF 364
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
EM L G++P G + L + + A+ + + + C I + Y++++ +
Sbjct: 365 DEM-LRQGVVPPTGTITSFIKQLCSYGPPYAAMMIYKKTRKLECKISMEAYKILL---MR 420
Query: 290 CREYILAGKTV---MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++ G + M E G+ ++V + ++ GL +G+ + A +V
Sbjct: 421 LSKFGKCGSLLSVWQEMQECGYSSDVEVYEYIISGLYNIGQLENAVLV 468
>gi|147833287|emb|CAN77475.1| hypothetical protein VITISV_041111 [Vitis vinifera]
Length = 1010
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/164 (25%), Positives = 72/164 (43%), Gaps = 1/164 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I+ EM S G+ PD T + ++ LC ++ A + + M S VPD+ +Y+I+I +
Sbjct: 467 IIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYTILIDSFC 526
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + EMV + G P + A R+M A E+ E + +GC
Sbjct: 527 KVGLLQQARKWFDEMVRD-GCAPNVVTYTALIHAYLKARKMSSANELFEMMLSEGCIPNV 585
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
Y +++G + + A + M IP + + K+ +G
Sbjct: 586 VTYTALIDGHCKSGQIEKACQIYARMRGNADIPDVDMYFKIDDG 629
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 60/243 (24%), Positives = 103/243 (42%), Gaps = 28/243 (11%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A +I++ + G +P S + C + V + L EMKS PD T
Sbjct: 464 AYSIIREMMSKGFIPDTSTY----SKVIGLLCNASKVDNAFLLFEEMKSNHVVPDVFTYT 519
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ S C + L +A K M C P++ +Y+ +I A ARK + A E+ EM+L+
Sbjct: 520 ILIDSFCKVGLLQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSANELF-EMMLS 578
Query: 236 MGLMP-------------RQGMVIK---VAAALRANREMWKAVEMIEFLERKGC--PIGF 277
G +P + G + K + A +R N ++ V+M ++ P F
Sbjct: 579 EGCIPNVVTYTALIDGHCKSGQIEKACQIYARMRGNADI-PDVDMYFKIDDGNIRDPNIF 637
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y +V+G + + A + M+ G P V +++G VG+ A +V +
Sbjct: 638 T-YGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCKVGKLDEAQMVFTK 696
Query: 338 FAE 340
+E
Sbjct: 697 MSE 699
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 88/212 (41%), Gaps = 8/212 (3%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPD 170
H + A +L GC P ++ A ++ C+ + + + +M GY P+
Sbjct: 650 HKVKEARDLLDVMSVEGCEP----NHIVYDALIDGFCKVGKLDEAQMVFTKMSERGYGPN 705
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
T + L+ L +L A KVL M C P++ Y+ +I + KT++A +M
Sbjct: 706 VYTYSSLIDRLFKDKRLDLALKVLSRMLENSCAPNVIIYTEMIDGLCKVGKTDEAYRLM- 764
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ G P + ++ K +E++ + KGC F Y V++ C
Sbjct: 765 SMMEEKGCHPNVVTYTAMIDGFGKAGKVDKCLELMRQMGAKGCAPNFVTYRVLINHCCAA 824
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + + M + + ++ +KV+EG
Sbjct: 825 GLLDDAHQLLDEMKQTYWPKHMAGYRKVIEGF 856
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 69/161 (42%), Gaps = 1/161 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L LC + +A +++ M S +PD +YS VIG + A K ++A + +EM N
Sbjct: 451 LARCLCGAGKFEKAYSIIREMMSKGFIPDTSTYSKVIGLLCNASKVDNAFLLFEEMKSNH 510
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
+ I + + + + +A + + + R GC Y ++ L+ R+ A
Sbjct: 511 VVPDVFTYTILIDSFCKVGL-LQQARKWFDEMVRDGCAPNVVTYTALIHAYLKARKMSSA 569
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+ M G IP + +++G G+ + A + R
Sbjct: 570 NELFEMMLSEGCIPNVVTYTALIDGHCKSGQIEKACQIYAR 610
Score = 39.3 bits (90), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 35/163 (21%), Positives = 71/163 (43%), Gaps = 6/163 (3%)
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCA 183
+ G + P I A ++ C++ V D+L M G P+ + L+ C
Sbjct: 626 IDDGNIRDPNI--FTYGALVDGLCKAHKVKEARDLLDVMSVEGCEPNHIVYDALIDGFCK 683
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ +L EA V MS P++ +YS +I + ++ + A++++ M+ N P
Sbjct: 684 VGKLDEAQMVFTKMSERGYGPNVYTYSSLIDRLFKDKRLDLALKVLSRMLEN-SCAPNVI 742
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ ++ L + +A ++ +E KGC Y +++G
Sbjct: 743 IYTEMIDGLCKVGKTDEAYRLMSMMEEKGCHPNVVTYTAMIDG 785
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 46/107 (42%), Gaps = 9/107 (8%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPDCGTC 174
A+ L R S C+P V R+LL +R RC+ IL M + G +P
Sbjct: 318 AMDFLSRMRSSSCIPNVVTYRILLCGCLRKRQLGRCKR-----ILSMMITEGCYPSRRIF 372
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
N L+ + C A K+LK M C P Y+I+IG + K
Sbjct: 373 NSLIHAYCRSGDYSYAYKLLKKMGDCGCQPGYVVYNILIGGICGNEK 419
>gi|22296415|dbj|BAC10183.1| pentatricopeptide repeat protein-like [Oryza sativa Japonica Group]
Length = 624
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 68/146 (46%), Gaps = 1/146 (0%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P+ T N L++ +C + EA VLK MS PD+ +Y+ +I +S + ++A
Sbjct: 250 GLEPNVVTYNVLINCMCKEGSVKEAIGVLKKMSEKGVAPDVVTYNTLIKGLSDVLEMDEA 309
Query: 226 VEMMKEMVLNMGLM-PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ +++EMV ++ P V L M +A ++ +E GC + Y +++
Sbjct: 310 MWLLEEMVRGKNIVKPNVVTFNSVIQGLCDIGRMRQAFQVRAMMEETGCMVNLVTYNLLI 369
Query: 285 EGCLECREYILAGKTVMGMTERGFIP 310
G L + A + + MT G P
Sbjct: 370 GGLLRVHKVRKAMELMDEMTSLGLEP 395
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 58/261 (22%), Positives = 111/261 (42%), Gaps = 17/261 (6%)
Query: 88 SFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL--RSGCVPVPQIRLLLSSAW 145
S + P R ++Y+ +L+ + H + +L C P +L A
Sbjct: 66 SLLDALPSVRDAVSYNTVLTALCRRGHHDRAGALLRAMSLEPHPACRPNAVSYTVLMRAL 125
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
R Q+V +L M+S G D T L+ LC ++ +A +++ M + P+
Sbjct: 126 CADRLADQAVG-LLRSMRSAGVRADVVTYGTLIRGLCDAAEVDKAVELMGEMCESGIEPN 184
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ YS ++ + + D ++ EM G+ P M + +L + KA ++
Sbjct: 185 VVVYSSLLQGYCKSGRWEDVGKVFVEMS-EKGIEPDVVMYTGLIDSLCKVGKAKKAHGVM 243
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG----MTERGFIPYIKVRQKVVEG 321
+ + R+G Y V++ C+ C+E + K +G M+E+G P + +++G
Sbjct: 244 DMMVRRGLEPNVVTYNVLIN-CM-CKEGSV--KEAIGVLKKMSEKGVAPDVVTYNTLIKG 299
Query: 322 LAGVGE-----WKLATVVRQR 337
L+ V E W L +VR +
Sbjct: 300 LSDVLEMDEAMWLLEEMVRGK 320
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 5/200 (2%)
Query: 129 SGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
+GC V + LL+ L R + + +++ EM S+G PD T + L+ C + Q+
Sbjct: 356 TGCMVNLVTYNLLIGG--LLRVHKVRKAMELMDEMTSLGLEPDSFTYSILIKGFCKMWQV 413
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
A +L M P+L Y ++ AM A + EM N L
Sbjct: 414 DRAEDLLSTMRDRGIEPELFHYIPLLVAMCEQGMMERARNLFNEMDNNFPL-DVVAYSTM 472
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ A +A ++ A E+++ + +G Y +V+ + + A + MT G
Sbjct: 473 IHGACKAG-DLKTAKELLKSIVDEGLTPDAVTYSIVINMFAKSGDMEAANGVLKQMTASG 531
Query: 308 FIPYIKVRQKVVEGLAGVGE 327
F+P + V +++G + GE
Sbjct: 532 FLPDVAVFDSLIQGYSTKGE 551
>gi|242049112|ref|XP_002462300.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
gi|241925677|gb|EER98821.1| hypothetical protein SORBIDRAFT_02g023500 [Sorghum bicolor]
Length = 541
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 79/159 (49%), Gaps = 10/159 (6%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M++ P+ T N ++ LC + ++ EA +L M++ PD+ SY+ ++
Sbjct: 309 VLDRMRARSLTPNVFTYNAVIRLLCELGEVDEAYNILNEMATYGEKPDVWSYNTLLNTHC 368
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAAL-RANREMWKAVEMIEFLERKGCP 274
++ N A+ ++ M + L R M++K+ A+ R +R A+E+ + +E++G
Sbjct: 369 KLKEVNKALRLISRMDEGLCLPNRHSYNMILKMLIAIGRVDR----AIEVWDGMEKRGFH 424
Query: 275 IGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPY 311
G Y V++ G L C++ A + M + G PY
Sbjct: 425 PGAATYAVMIHG-LSCKKGRAEEACSYFLRMVDDGIPPY 462
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 43/76 (56%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+IL EM + G PD + N L+++ C + ++ +A +++ M C+P+ SY++++ +
Sbjct: 343 NILNEMATYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNMILKML 402
Query: 217 STARKTNDAVEMMKEM 232
+ + A+E+ M
Sbjct: 403 IAIGRVDRAIEVWDGM 418
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 36/161 (22%), Positives = 67/161 (41%), Gaps = 1/161 (0%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
+S G PD T + S CA A +VL M + P++ +Y+ VI + +
Sbjct: 279 RSRGLAPDAATYGPFLRSACASKDARAALRVLDRMRARSLTPNVFTYNAVIRLLCELGEV 338
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++A ++ EM G P + +E+ KA+ +I ++ C Y +
Sbjct: 339 DEAYNILNEMA-TYGEKPDVWSYNTLLNTHCKLKEVNKALRLISRMDEGLCLPNRHSYNM 397
Query: 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+++ + A + GM +RGF P ++ GL+
Sbjct: 398 ILKMLIAIGRVDRAIEVWDGMEKRGFHPGAATYAVMIHGLS 438
>gi|357140210|ref|XP_003571663.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g74580-like [Brachypodium distachyon]
Length = 841
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 81/170 (47%), Gaps = 11/170 (6%)
Query: 78 RIKVIDEMLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ ++E ++F+ + R I Y+ L+S + + AL + ++ +SG +P
Sbjct: 537 RLDHVNEAYQAFVEMTGRGFVPNNITYNSLIS-AFCRVGYVSEALKLEKKMRQSGLIP-- 593
Query: 136 QIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ S+ ++ C+ + + L+M + G PD T N ++++ C + A
Sbjct: 594 --DVFTSNILIDGFCKEGRLDMMNKRFLDMYNSGLTPDVVTYNTIINAYCGAQDMSSAMI 651
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+ M + C PD+ +Y+I + ++ N AV+M+ E+V MG MP
Sbjct: 652 FMNKMLADGCEPDIFTYNIWMHSLCNNHLLNRAVKMLDELVA-MGCMPNS 700
>gi|15241491|ref|NP_196981.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|9755745|emb|CAC01876.1| putative protein [Arabidopsis thaliana]
gi|332004692|gb|AED92075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 938
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ S+ + + +MKS G P +CN +V LC ++ EA +L M E P+L
Sbjct: 585 KQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLT 644
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y I + S+ K DA+ E +L+ G+ + + + A L KA ++
Sbjct: 645 TYRIFLDT-SSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGD 703
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E +G + ++ G A T M E G P + ++ GL+ G
Sbjct: 704 MEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAG- 762
Query: 328 WKLATVVRQRFAELKS 343
L V + +E+KS
Sbjct: 763 --LIKEVDKWLSEMKS 776
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ L+ + L ++ + +M G+ PD T + +++ LC +++E +
Sbjct: 222 ISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLL 281
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L+ M P+ +Y+ ++ ++ A A+ + +MV+
Sbjct: 282 LREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVV------------------- 322
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+G P+ Y V+++G + + A KT + E +P +
Sbjct: 323 -----------------RGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 365
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAE 340
+V+GL G+ A + + E
Sbjct: 366 TYTALVDGLCKAGDLSSAEFIITQMLE 392
Score = 38.1 bits (87), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V L EMKS G PD T N L+S I + + + M + VP +Y+++
Sbjct: 765 KEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVL 824
Query: 213 IGAMSTARKTNDAVEMMKEM 232
I + K A E++KEM
Sbjct: 825 ISEFANVGKMLQARELLKEM 844
>gi|357499781|ref|XP_003620179.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355495194|gb|AES76397.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 517
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/136 (22%), Positives = 66/136 (48%), Gaps = 1/136 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q I M +G PD + + L++ C I + EA ++LK M + +P++ +YS
Sbjct: 227 QVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMMDEAMELLKEMHHKQIIPNVVTYS 286
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I + + K + A++++ EM + G P + AL N ++ A+ ++ ++
Sbjct: 287 SLIDGLCKSGKISYALKLVDEM-HDRGQPPNIVTYSSILDALCKNHQVDNAIALLTQMKN 345
Query: 271 KGCPIGFQGYEVVVEG 286
+G Y ++++G
Sbjct: 346 QGIQPNMYTYTILIKG 361
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/185 (21%), Positives = 85/185 (45%), Gaps = 4/185 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M G P T N L+ + Q+ +A + M+ PD++SYSI+I
Sbjct: 198 NVLAMMMIQGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGF 257
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ ++A+E++KEM + ++P + L + ++ A+++++ + +G P
Sbjct: 258 CKIKMMDEAMELLKEM-HHKQIIPNVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPN 316
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++ + + A + M +G P + +++GL G+ + A R+
Sbjct: 317 IVTYSSILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDA---RK 373
Query: 337 RFAEL 341
F +L
Sbjct: 374 VFEDL 378
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 51/278 (18%), Positives = 110/278 (39%), Gaps = 20/278 (7%)
Query: 67 FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRT 126
FS + F N+ + + + P + P I ++ +L ++S H L + Q+
Sbjct: 31 FSTSTTFHNNNDVDDAVSLFNRLLQQNP-TPPNIEFNKILGSLVKSKH-YHTVLYLSQKM 88
Query: 127 LRSGCVPVPQIRLLLSSAWLERRCQ---SQSVADILLEMKSIGYHPDCGTCNYLVSSL-- 181
G P L+ + + CQ S +L ++ +GY P+ T N L+ L
Sbjct: 89 EFRGIKP----NLVNCNILINSFCQLGHIPSAFSVLTKILKMGYKPNTITLNTLIKGLCL 144
Query: 182 --------CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
C + +L +A + M PD+ +++I++ + +A ++ M+
Sbjct: 145 NGKIHDKHCIVGKLKDAVDLFNKMILENINPDVYTFTILVDGFCKEGRVKEAKNVLAMMM 204
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
+ G+ P + +++ KA + + + G Q Y +++ G + +
Sbjct: 205 I-QGIKPGVVTYNSLMDGYFLVKQVNKAKSIFNTMAQLGVSPDIQSYSILINGFCKIKMM 263
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A + + M + IP + +++GL G+ A
Sbjct: 264 DEAMELLKEMHHKQIIPNVVTYSSLIDGLCKSGKISYA 301
Score = 42.4 bits (98), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 36/194 (18%), Positives = 91/194 (46%), Gaps = 10/194 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A+ +L+ +P ++ S+ ++ C+S ++ ++ EM G P+ T +
Sbjct: 266 AMELLKEMHHKQIIP----NVVTYSSLIDGLCKSGKISYALKLVDEMHDRGQPPNIVTYS 321
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ +LC Q+ A +L M + P++ +Y+I+I + + K DA ++ +++++
Sbjct: 322 SILDALCKNHQVDNAIALLTQMKNQGIQPNMYTYTILIKGLCQSGKLEDARKVFEDLLVK 381
Query: 236 MGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ + + ++ ++ +A+ ++ +E GC + YE+++ + E
Sbjct: 382 GHNLNVYTYTVMIQGF--CDKGLFDEALTLLSKMEDNGCIPNAKTYEIIILSLFKKDENE 439
Query: 295 LAGKTVMGMTERGF 308
+A K + M E F
Sbjct: 440 MAEKLLCEMIETNF 453
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 33/162 (20%), Positives = 72/162 (44%), Gaps = 17/162 (10%)
Query: 77 HRIKVIDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134
+ +K++DEM R +P + Y +L ++ H + A+A+L + G P
Sbjct: 300 YALKLVDEM-------HDRGQPPNIVTYSSILDALCKN-HQVDNAIALLTQMKNQGIQP- 350
Query: 135 PQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
+ + ++ CQS + D + ++ G++ + T ++ C EA
Sbjct: 351 ---NMYTYTILIKGLCQSGKLEDARKVFEDLLVKGHNLNVYTYTVMIQGFCDKGLFDEAL 407
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+L M C+P+ ++Y I+I ++ + A +++ EM+
Sbjct: 408 TLLSKMEDNGCIPNAKTYEIIILSLFKKDENEMAEKLLCEMI 449
>gi|255538538|ref|XP_002510334.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223551035|gb|EEF52521.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 947
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/180 (22%), Positives = 69/180 (38%), Gaps = 36/180 (20%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK +G+ PD T L+ C + + EA KV + M +P +E Y+ +IG + ++K
Sbjct: 525 MKELGFEPDGVTYRTLIDGYCKLGNVEEAFKVKEKMEKEAILPSIELYNSLIGGLFKSKK 584
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
T + ++++ EM L KG Y
Sbjct: 585 TREVMDLLSEMCL------------------------------------KGLSPNVVTYG 608
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ G + A M E+GF P + + K+V L +G A ++ Q+ L
Sbjct: 609 TLIAGWCDEGRLDKAFTAYFDMIEKGFAPNVIICSKIVSSLYRLGRIDEANMLLQKMVNL 668
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 44/191 (23%), Positives = 74/191 (38%), Gaps = 1/191 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
SQ +AD L E P+ N ++ LC ++ +A K+ + PD +Y
Sbjct: 689 DSQKIADTLDESSKSFSLPNSVVYNIAIAGLCKSGKVDDAKKIFSSLLLRGFSPDNFTYC 748
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I S A NDA + EM L GL P + L + + +A ++ + L
Sbjct: 749 TLIHGYSAAGNVNDAFSLRDEM-LKRGLAPNIITYNALINGLCKSGNLDRAQKLFDKLHL 807
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
KG Y ++++G + A M + G P + ++ G G+
Sbjct: 808 KGLAPNVISYNILIDGYCKNGNTREALDLRNKMLKEGISPSLITYSALIYGFCKQGDMGK 867
Query: 331 ATVVRQRFAEL 341
AT + EL
Sbjct: 868 ATNLLDEMREL 878
>gi|356532610|ref|XP_003534864.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g20090-like [Glycine max]
Length = 642
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 65/128 (50%), Gaps = 2/128 (1%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
KS+ HP+ T N ++ ++C + + +A +V + + C PD +YS ++ + +
Sbjct: 162 KSLNIHPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLMHGLCKEERI 221
Query: 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++AV ++ EM + G P + +AL ++ +A ++++ + KGC Y
Sbjct: 222 DEAVSLLDEMQVE-GTFPNLVAFNVLISALCKKGDLGRAAKLVDNMFLKGCVPNEVTYNA 280
Query: 283 VVEG-CLE 289
+V G CL+
Sbjct: 281 LVHGLCLK 288
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 121/283 (42%), Gaps = 11/283 (3%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESF--IPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
+PN +F R+ ++D+ +E F IPLR + Y L+ + L + A+
Sbjct: 167 HPNALTFNLVIKAMCRLGLVDKAIEVFREIPLRNCAPDNYTYSTLM-HGLCKEERIDEAV 225
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
++L G P + +L+S+ L ++ A ++ M G P+ T N LV
Sbjct: 226 SLLDEMQVEGTFPNLVAFNVLISA--LCKKGDLGRAAKLVDNMFLKGCVPNEVTYNALVH 283
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
LC +L +A +L M S +CVP+ ++ +I + +D ++ + G
Sbjct: 284 GLCLKGKLEKAVSLLNQMVSNKCVPNDVTFGTLINGFVMQGRASDGTRVLVSLEAR-GHR 342
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AG 297
+ + + + L + +A+E+ + + KGC Y +++G CRE L A
Sbjct: 343 GNEYVYSSLISGLCKEGKFNQAMELWKEMVGKGCGPNTIVYSALIDGL--CREGKLDEAR 400
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ M +G++P ++ G G+ A +V + A
Sbjct: 401 GFLSEMKNKGYLPNSFTYSSLMRGYFEAGDSHKAILVWKEMAN 443
>gi|222636130|gb|EEE66262.1| hypothetical protein OsJ_22447 [Oryza sativa Japonica Group]
Length = 876
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 41/203 (20%), Positives = 93/203 (45%), Gaps = 3/203 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL I + ++GC P L +++ ++ ++L G+ P T L+
Sbjct: 227 ALKIKELMEKNGCHPDDWTYNTLIYGLCDQK--TEEAEELLNNAVKEGFTPTVVTFTNLI 284
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C ++ +A ++ M S++C DL+ + +I ++ + +A E++ E+ N GL
Sbjct: 285 NGYCMAEKFDDALRMKNKMMSSKCKLDLQVFGKLINSLIKKDRLKEAKELLNEISAN-GL 343
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + + ++ A+E+++ +ER GC Y ++ G ++ ++ A
Sbjct: 344 VPNVITYTSIIDGYCKSGKVDIALEVLKMMERDGCQPNAWTYNSLMYGLVKDKKLHKAMA 403
Query: 299 TVMGMTERGFIPYIKVRQKVVEG 321
+ M + G IP + +++G
Sbjct: 404 LLTKMQKDGIIPNVITYTTLLQG 426
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 87/204 (42%), Gaps = 18/204 (8%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ D++L+M+ G PD T N L+ + + A LK M A C P+ +Y ++
Sbjct: 606 EDAEDLILKMEREGVAPDVVTYNILIDGCGHMGYIDRAFSTLKRMVGASCEPNYWTYCLL 665
Query: 213 I-----GAMSTARKTN----------DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ G ++ R + D + E ++ GL P + A
Sbjct: 666 LKHLLKGNLAYVRSVDTSGMWNLIELDITWQLLERMVKHGLNPTVTTYSSLIAGFCKAGR 725
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ +A +++ + KG Y ++++ C + + + A V M+E GF P ++ +
Sbjct: 726 LEEACLLLDHMCGKGLSPNEDIYTLLIKCCCDTKFFEKALSFVSIMSECGFQPQLESYRL 785
Query: 318 VVEGLAGVGEWKLATVVRQRFAEL 341
+V GL G+++ V+ F +L
Sbjct: 786 LVVGLCNEGDFE---KVKSLFCDL 806
Score = 41.6 bits (96), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 48/200 (24%), Positives = 85/200 (42%), Gaps = 15/200 (7%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE----MKSIGYHPDC 171
L A +L +G VP ++ ++ ++ C+S V DI LE M+ G P+
Sbjct: 328 LKEAKELLNEISANGLVP----NVITYTSIIDGYCKSGKV-DIALEVLKMMERDGCQPNA 382
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L+ L +L +A +L M +P++ +Y+ ++ ++A + E
Sbjct: 383 WTYNSLMYGLVKDKKLHKAMALLTKMQKDGIIPNVITYTTLLQGQCDEHDFDNAFRLF-E 441
Query: 232 MVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
M+ GL P + + AL +A R A E F+ RKG + Y +++G +
Sbjct: 442 MMEQNGLKPDEHAYAVLTDALCKAGR----AEEAYSFIVRKGVALTKVYYTTLIDGFSKA 497
Query: 291 REYILAGKTVMGMTERGFIP 310
A + M + G P
Sbjct: 498 GNTDFAATLIERMIDEGCTP 517
Score = 38.1 bits (87), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 34/137 (24%), Positives = 58/137 (42%), Gaps = 1/137 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ A ++ M G PD T + L+ +LC +L EA +L MS + +Y+
Sbjct: 499 NTDFAATLIERMIDEGCTPDSYTYSVLLHALCKQKRLNEALPILDQMSLRGIKCTIFAYT 558
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I+I M K + A M EM + G P + + A ++I +ER
Sbjct: 559 ILIDEMLREGKHDHAKRMYNEMT-SSGHKPSATTYTVFINSYCKEGRLEDAEDLILKMER 617
Query: 271 KGCPIGFQGYEVVVEGC 287
+G Y ++++GC
Sbjct: 618 EGVAPDVVTYNILIDGC 634
>gi|358346363|ref|XP_003637238.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355503173|gb|AES84376.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 663
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 79/180 (43%), Gaps = 7/180 (3%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C+++ DIL EMKS G P+ T N L+ LC + +A L M E VP ++
Sbjct: 324 CKTEDALDILNEMKSYGIMPNAVTYNILIGGLCKTGAVEKAESALDEMLVMEFVPTPITH 383
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGL---MPRQGMVIKVAAALRANREMWKAVEMIE 266
++ A S + K + +++ +++V + GL + +I V L R KA +++
Sbjct: 384 KFLVKAYSRSEKADKILQIHEKLVAS-GLELSLTVYNTLITVFCRLGMTR---KAKVVLD 439
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ ++G Y ++ G A KT M G P I ++ GL+ G
Sbjct: 440 EMVKRGISADLVTYNALIRGYCTGSHVEKALKTYSQMFVDGIAPNITTYNTLLGGLSNAG 499
>gi|297849270|ref|XP_002892516.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338358|gb|EFH68775.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 607
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/187 (22%), Positives = 74/187 (39%), Gaps = 4/187 (2%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C +Q V D E+ P + N L++ C + L ++ M + PD+ +Y
Sbjct: 257 CDAQKVFD---EITKRSLRPTVVSFNTLINGYCKVGNLDVGFRLKHHMEKSRTRPDVFTY 313
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
S +I A+ K + A + EM GL+P + + N ++ E + +
Sbjct: 314 SALINALCKENKMDGAHRLFYEMC-ERGLIPNDVIFTTLIHGHSRNGQIDLMKESYQKML 372
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
KG Y +V G + + + A V GM RG P +++G G+
Sbjct: 373 SKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTLIDGFCRGGDVD 432
Query: 330 LATVVRQ 336
A +R+
Sbjct: 433 TALEIRK 439
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 54/242 (22%), Positives = 92/242 (38%), Gaps = 2/242 (0%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R+RP + L L + + A + G +P I L R Q
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHRLFYEMCERGLIPNDVIFTTLIHGH-SRNGQI 361
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +M S G PD N LV+ C LV A ++ GM PD +Y+ +
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKVTYTTL 421
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + A+E+ KEM N + R G + + R + + E L R G
Sbjct: 422 IDGFCRGGDVDTALEIRKEMDQNGIELDRVGFSALICGMCKEGRVIDAERALREML-RAG 480
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++++ + + K + M G IP + ++ GL +G+ K A
Sbjct: 481 MKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLCKLGQMKNAD 540
Query: 333 VV 334
++
Sbjct: 541 ML 542
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 66/139 (47%), Gaps = 11/139 (7%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L+ LR+G P ++ A+ ++ +Q+ +L EM+S G+ P+ T N L++ LC
Sbjct: 473 LREMLRAGMKPDDVTYTMMMDAFC-KKGDAQTGFKLLKEMQSDGHIPNVVTYNVLLNGLC 531
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+ Q+ A +L M + VPD +Y+ ++ R N + ++ P
Sbjct: 532 KLGQMKNADMLLDAMLNVGVVPDDITYNTLLEGHH--RHANASKHYKQK--------PEI 581
Query: 243 GMVIKVAAALRANREMWKA 261
G+V +A+ E+++A
Sbjct: 582 GIVADLASYKSLVNELYRA 600
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 50/101 (49%), Gaps = 4/101 (3%)
Query: 143 SAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
SA + C+ V D L EM G PD T ++ + C K+LK M S
Sbjct: 454 SALICGMCKEGRVIDAERALREMLRAGMKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQS 513
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+P++ +Y++++ + + +A +M+ + +LN+G++P
Sbjct: 514 DGHIPNVVTYNVLLNGLCKLGQMKNA-DMLLDAMLNVGVVP 553
>gi|297836911|ref|XP_002886337.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
gi|297332178|gb|EFH62596.1| F1N19.15 [Arabidopsis lyrata subsp. lyrata]
Length = 1059
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 95/217 (43%), Gaps = 9/217 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIG-YHPDCGTC 174
A +++ ++SG P +++ + ++ C++ V ++L EM+ G D T
Sbjct: 154 AFSLVASMVKSGYEP----NVVVYNTLIDCLCKNGDVNIALELLNEMEKKGRLAADLVTY 209
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L++ LC + +AA++L+ M+ PD+ +++ +I A ++A E+ K+M L
Sbjct: 210 NTLLTGLCYSGEWRQAARILRDMTKRRINPDVFTFTALIDAFVKQGNLDEAQELYKQM-L 268
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ P + L + ++ A + + + KGC Y ++ G + R
Sbjct: 269 QSSIGPNTVTYNSLINGLCMHGRLYHAKKTFDLMASKGCFPNVVTYNTLINGFCKSRRVE 328
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
K M G + ++ G VG+ ++A
Sbjct: 329 DGMKLFQRMYREGLVGDTFTYNTLIHGYCQVGKLRVA 365
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 47/186 (25%), Positives = 78/186 (41%), Gaps = 12/186 (6%)
Query: 130 GCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
GC P ++ + + C+S+ V D + EM G D T N L+ C +
Sbjct: 855 GCFP----DVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGK 910
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A KV M PD+ +Y+I++ + K A+ M++++ N + I
Sbjct: 911 LNVAQKVFNRMVDCGVPPDIVTYNILLDCLCNNGKIEKALVMVEDLQKNQMDVDIITYNI 970
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMT 304
+ R N ++ +A + L RKG + Y ++ G CR + A K M
Sbjct: 971 IIQGMCR-NDKVKEAWCLFRSLTRKGVKLDAIAYITMISGL--CRNGLRREADKLCTRMK 1027
Query: 305 ERGFIP 310
E GF+P
Sbjct: 1028 EDGFMP 1033
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 29/121 (23%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCG 172
LALA+L + ++ G P ++ + L CQ Q ++ M +G P+
Sbjct: 666 FSLALALLGKMMKLGFQP----SIVTLGSLLNGFCQGNRFQEAVSLVDSMAELGLEPNVV 721
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N +++ LC L A ++ GM V D +Y+ +I + + + DA ++++M
Sbjct: 722 IYNTVINGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDM 781
Query: 233 V 233
V
Sbjct: 782 V 782
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 37/188 (19%), Positives = 71/188 (37%), Gaps = 1/188 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ +I M+ G D T N L+S LC + +AA++L+ M + P++ ++ +
Sbjct: 737 NNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKIDPNVIFFTAL 796
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +A + KEM+ + P + + A M + + KG
Sbjct: 797 IDTFVKEGNLLEAKNLYKEMI-RRSVHPNILTYNSLINGFCIQGRLGDAKHMFDLMVSKG 855
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
C Y ++ G + + K MT +G + ++ G G+ +A
Sbjct: 856 CFPDVVTYNTLITGFCKSKRVEDGMKLFCEMTHQGLVGDAFTYNTLIHGYCQAGKLNVAQ 915
Query: 333 VVRQRFAE 340
V R +
Sbjct: 916 KVFNRMVD 923
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/184 (20%), Positives = 74/184 (40%), Gaps = 8/184 (4%)
Query: 133 PVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
P+P I R+L + A + + V + +M+++G D + L+ C +
Sbjct: 611 PIPSIVDFTRVLTAIAKMNK---FDIVIYLFHKMENLGISHDLYSFTILIHCFCRCSRFS 667
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248
A +L M P + + ++ + +AV ++ M +GL P + V
Sbjct: 668 LALALLGKMMKLGFQPSIVTLGSLLNGFCQGNRFQEAVSLVDSMA-ELGLEPNVVIYNTV 726
Query: 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
L NR++ A+E+ +E+KG Y ++ G + A + + M +R
Sbjct: 727 INGLCKNRDLNNALEIFYGMEKKGIVADAVTYNTLISGLCNSGRWTDAARLLRDMVKRKI 786
Query: 309 IPYI 312
P +
Sbjct: 787 DPNV 790
>gi|297723955|ref|NP_001174341.1| Os05g0313900 [Oryza sativa Japonica Group]
gi|255676233|dbj|BAH93069.1| Os05g0313900 [Oryza sativa Japonica Group]
Length = 1070
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/140 (23%), Positives = 67/140 (47%), Gaps = 1/140 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR ++ D+L EM++ G+ P C +V LC ++ EA + L GM +PD+
Sbjct: 522 RRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIV 581
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+YS + M + +DA+ + +++ L I + R + ++ +A +++E
Sbjct: 582 TYSAAMNGMCNTGEVDDALHLFRDISCKYYLPDVVAHNILI-NGFRKSSKLDEAQKIMEE 640
Query: 268 LERKGCPIGFQGYEVVVEGC 287
+ KG Y ++++ C
Sbjct: 641 MLEKGLFPSVVTYNLMIDVC 660
Score = 37.4 bits (85), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 70/160 (43%), Gaps = 3/160 (1%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ + N +V LC + +L A + K M S C + ++ +I + + + +
Sbjct: 438 PNSDSFNIVVCGLCKVKKLDMALALTKDMISLGCKGKILMFNDLIHELCNMDRLEEGYGI 497
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG-YEVVVEGC 287
+M ++GL P + + + ++ A++++ ++ G P + E+V + C
Sbjct: 498 FNQMK-DLGLTPSEFTYNSLFYGICRRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLC 556
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
R A + + GM + GF+P I + G+ GE
Sbjct: 557 FSGR-VTEAVQFLDGMLQIGFLPDIVTYSAAMNGMCNTGE 595
>gi|449530367|ref|XP_004172167.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like, partial [Cucumis sativus]
Length = 564
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 84/206 (40%), Gaps = 4/206 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + SGC+P L +E+R + + IL EM G P+ T ++
Sbjct: 212 ALDVFDMMRMSGCIPTVHTYNALILGLVEKR-KMEKAEQILDEMTLAGVSPNEHTYTTIM 270
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ +A + D+ +Y ++ A + + A+ + KEM
Sbjct: 271 HGYASLGDTGKAFAYFTKLRDEGLQLDVYTYEALLKACCKSGRMQSALAVTKEMSAQN-- 328
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+PR + + A R ++W+A ++++ ++R+G Y + C + + A
Sbjct: 329 IPRNTFIYNILIDGWARRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRAT 388
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLA 323
KT+ M G P +K ++ G A
Sbjct: 389 KTIEEMKSVGVKPNVKTYTTLINGWA 414
Score = 43.1 bits (100), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 45/217 (20%), Positives = 86/217 (39%), Gaps = 5/217 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++ T + V+ + ++ ++L A +PN ++ + + + F
Sbjct: 227 TVHTYNALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGDTGKAFAYF 286
Query: 90 IPLRPRSRPKIAYDY--LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
LR Y Y LL +S + ALA+ + I +L W
Sbjct: 287 TKLRDEGLQLDVYTYEALLKACCKSGR-MQSALAVTKEMSAQNIPRNTFIYNILIDGW-A 344
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR AD++ +MK G PD T +++ + A K ++ M S P+++
Sbjct: 345 RRGDVWEAADLMQQMKREGVQPDIHTYTSFINACSKAGDMQRATKTIEEMKSVGVKPNVK 404
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244
+Y+ +I + A A+ +EM L+ GL P + +
Sbjct: 405 TYTTLINGWARASLPEKALSCFEEMKLS-GLKPDRAV 440
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 36/167 (21%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G + T + L++ + A + + + PD+ Y+ +I A
Sbjct: 113 EMEHAGIKHNMKTYSMLINGFLKLKDWANAFAIFEDLIKDGIKPDVVLYNNIITAFCGMG 172
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K + AV +KEM P + + EM KA+++ + + GC Y
Sbjct: 173 KMDRAVCTVKEM-QKQRHKPTTRTFMPIIHGFARKGEMKKALDVFDMMRMSGCIPTVHTY 231
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G +E R+ A + + MT G P ++ G A +G+
Sbjct: 232 NALILGLVEKRKMEKAEQILDEMTLAGVSPNEHTYTTIMHGYASLGD 278
>gi|334183592|ref|NP_001185295.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75179660|sp|Q9LQ15.1|PPR95_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g62914, mitochondrial; Flags: Precursor
gi|8493579|gb|AAF75802.1|AC011000_5 Contains a RepB PF|01051 protein domain and multiple PPR PF|01535
repeats. EST gb|AA728420 comes from this gene
[Arabidopsis thaliana]
gi|332195900|gb|AEE34021.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 528
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T + L++ C +D+L EA ++L+ M +C+P++ +Y+ +I A+
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +EM GL+ + R+ A + + + G Y
Sbjct: 408 RVDKGMELFREMS-QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 466
Query: 281 EVVVEGCLECREYILA-GKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATV 333
++++G C+ LA V +R + P I ++EG+ G+WK+ +
Sbjct: 467 NILLDGL--CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGI 519
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 1/172 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M +GY PD T N L++ C +++ +A ++ M PD +++ +I +
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHN 197
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K ++AV ++ MV G P V L + A+ ++ +E Y
Sbjct: 198 KASEAVALIDRMV-QRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
V++ + R A M +G P + ++ L G W A+
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDAS 308
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 63 NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLH---P 115
+PN F++ ++ F R+ +MLE + +R P + Y+ L++ ++
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLE--LMIRKDCLPNVVTYNTLINGFCKAKRVDKG 412
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+ L + QR L V L+ + R C + + + +M S+G HP+ T N
Sbjct: 413 MELFREMSQRGLVGNTVTYTT---LIHGFFQARDCDNAQM--VFKQMVSVGVHPNILTYN 467
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
L+ LC +L +A V + + + PD+ +Y+I+I M A K
Sbjct: 468 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 43.5 bits (101), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 136 QIRLLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ +++ S ++ C+ + D L EM++ G P+ T + L+S LC + +A++
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+L M + P+L ++S +I A K A ++ +EM+ + P +
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMI-KRSIDPNIFTYSSLINGF 368
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ +A +M+E + RK C Y ++ G + + + M++RG +
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428
Query: 313 KVRQKVVEGL 322
++ G
Sbjct: 429 VTYTTLIHGF 438
>gi|413951894|gb|AFW84543.1| hypothetical protein ZEAMMB73_135692 [Zea mays]
Length = 575
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/158 (25%), Positives = 74/158 (46%), Gaps = 4/158 (2%)
Query: 78 RIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ ++E ++F + R I Y+ ++S L + A + Q +SG VP
Sbjct: 238 RLDYVNEAYQAFAEMTSRGIVPNNITYNSIIS-ALCKAGNMTEAFKLEQNMRQSGLVPDI 296
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L L R + + V ++LL+M S G PD T N ++++ C + A +
Sbjct: 297 YTSNILIDG-LCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQDMNSAMNFMN 355
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
M A C PD+ +Y+I + ++ N A +++ E+V
Sbjct: 356 KMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGKLLDELV 393
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 37/143 (25%), Positives = 62/143 (43%), Gaps = 4/143 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
M+ G PD T N L+ LC +L +L M S PD +Y+ +I A A+
Sbjct: 286 NMRQSGLVPDIYTSNILIDGLCREGKLKMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAQ 345
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
N A+ M +M++ G P +L N + +A ++++ L C Y
Sbjct: 346 DMNSAMNFMNKMLV-AGCEPDIFTYNIWMHSLYRNHMLNQAGKLLDELVAVDCSPNSVTY 404
Query: 281 EVVVEG-CLEC--REYILAGKTV 300
+++G C + R IL G+ +
Sbjct: 405 NTLMDGICSDVLDRAMILTGRLI 427
Score = 42.4 bits (98), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 40/169 (23%), Positives = 72/169 (42%), Gaps = 10/169 (5%)
Query: 136 QIRLLLSSAWLERRCQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q + SA++ R + V + EM S G P+ T N ++S+LC + EA K
Sbjct: 223 QTDFIAFSAYINGRSRLDYVNEAYQAFAEMTSRGIVPNNITYNSIISALCKAGNMTEAFK 282
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQGMVIKVA 249
+ + M + VPD+ + +I+I + K ++M+ ++L+M GL P +
Sbjct: 283 LEQNMRQSGLVPDIYTSNILIDGLCREGK----LKMVDNLLLDMCSNGLTPDTVTYNTII 338
Query: 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
A ++M A+ + + GC Y + + AGK
Sbjct: 339 NAYCRAQDMNSAMNFMNKMLVAGCEPDIFTYNIWMHSLYRNHMLNQAGK 387
>gi|22330179|ref|NP_683419.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
gi|75216707|sp|Q9ZU27.1|PPR76_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g51965, mitochondrial; Flags: Precursor
gi|4220445|gb|AAD12672.1| Similar to gi|3004555 F19F24.14 salt inducible protein homolog from
Arabidopsis thaliana BAC gb|AC003673 [Arabidopsis
thaliana]
gi|332194619|gb|AEE32740.1| ABA Overly-Sensitive 5 protein [Arabidopsis thaliana]
Length = 650
Score = 51.2 bits (121), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L + G V + + SA L + Q + D+ +MK G PD T N L+
Sbjct: 426 AIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+S + ++ EA + + + ++C PD+ SY+ +I + ++A KEM GL
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGL 543
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
P + + A + E + KGC Y ++++ CLE
Sbjct: 544 NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD-CLE 593
Score = 38.5 bits (88), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L A+L R S++ D+ E++ G+ D N L+ +L A D+ +A +V + M
Sbjct: 209 LLQAYLRSRDYSKAF-DVYCEIRRGGHKLDIFAYNMLLDAL-AKDE--KACQVFEDMKKR 264
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRA 254
C D +Y+I+I M K ++AV + EM+ +G+ + V L
Sbjct: 265 HCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMIT-------EGLTLNVVGYNTLMQVLAK 317
Query: 255 NREMWKAVEMIEFLERKGC 273
+ + KA+++ + GC
Sbjct: 318 GKMVDKAIQVFSRMVETGC 336
>gi|299471045|emb|CBN78905.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 755
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/187 (25%), Positives = 85/187 (45%), Gaps = 7/187 (3%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R Q + V +L EM S+G PD T N +++ Q EA VL MS+ P+
Sbjct: 227 RGGQWERVIGLLREMPSVGLTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETI 286
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEM 264
SY++ I A + + +AVE++++M + G+ P VI AA++A W+ +V++
Sbjct: 287 SYNMAIRACGRSGRWKEAVEVLRQME-SQGVTPD---VISYDAAIKACGGGGQWETSVDL 342
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ + +G + + C + ++ A + + +T G P +
Sbjct: 343 LDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFNSAIAACTK 402
Query: 325 VGEWKLA 331
G WK A
Sbjct: 403 SGRWKEA 409
Score = 48.1 bits (113), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 42/181 (23%), Positives = 73/181 (40%), Gaps = 1/181 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + D+L +MK + PD T N +++ + EA +L+ M PD+ SY+
Sbjct: 510 QWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGRWKEAVALLREMPGQGLTPDVISYT 569
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
I A + AVE++++M GL P V A E KA+++++ L+
Sbjct: 570 AAIDAYGKNGQWERAVELLRQMPTK-GLTPNVITYNSVIKACGRGGEWEKALDLLKELKE 628
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
Y + + C + + A + M G P + + GEW+
Sbjct: 629 TAVAPDLMSYNLAISACGKRGRWEEALDLLREMPAEGLTPDVISYTSAIRACNAEGEWEK 688
Query: 331 A 331
A
Sbjct: 689 A 689
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 77/186 (41%), Gaps = 7/186 (3%)
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
R + Q ++L +M + G P+ T N + + Q +A +L M PD +
Sbjct: 473 RGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSIT 532
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA---NREMWKAVEMI 265
Y+ I A S + +AV +++EM GL P VI AA+ A N + +AVE++
Sbjct: 533 YNSAIAACSKRGRWKEAVALLREMP-GQGLTPD---VISYTAAIDAYGKNGQWERAVELL 588
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ KG Y V++ C E+ A + + E P + +
Sbjct: 589 RQMPTKGLTPNVITYNSVIKACGRGGEWEKALDLLKELKETAVAPDLMSYNLAISACGKR 648
Query: 326 GEWKLA 331
G W+ A
Sbjct: 649 GRWEEA 654
Score = 42.0 bits (97), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 79/187 (42%), Gaps = 7/187 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + ++L E+ ++G PD + N +++ + EA ++LK M + PD SY+
Sbjct: 370 QWEKAVELLREVTALGLTPDATSFNSAIAACTKSGRWKEALELLKEMPAKRLKPDAISYN 429
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEMIEF 267
I A + A+E+ ++M GL P VI A+RA R W+ +E++
Sbjct: 430 SAIEACGKGGQWEMALELRRQMPTK-GLTPN---VISSNIAIRACGERGRWQEGLELLRQ 485
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +G Y ++ C + ++ A + M E P + + G
Sbjct: 486 MPAQGLTPNVITYNSAIKTCGKGGQWEKALDLLAKMKELAMTPDSITYNSAIAACSKRGR 545
Query: 328 WKLATVV 334
WK A +
Sbjct: 546 WKEAVAL 552
Score = 38.9 bits (89), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 4/212 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM-KSIGYHPDCGTCNYL 177
AL IL G V +++ R+ Q + ++L E+ + G P+ N
Sbjct: 129 ALGILDEMKEGGVVCAHSYTTAITT--CGRQGQWEKALELLREIPEQEGVSPNVFCYNSA 186
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + + DQ A +L+ M+ E VPD SY+ I A + + +++EM ++G
Sbjct: 187 IEACGSGDQWEIAVSLLREMADREVVPDEISYNSAIKACGRGGQWERVIGLLREMP-SVG 245
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L P V + +A+ ++ + KG Y + + C + A
Sbjct: 246 LTPDAITYNSVITGCGKEGQWKEALSVLTEMSAKGLTPETISYNMAIRACGRSGRWKEAV 305
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ + M +G P + ++ G G+W+
Sbjct: 306 EVLRQMESQGVTPDVISYDAAIKACGGGGQWE 337
Score = 37.7 bits (86), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 41/194 (21%), Positives = 82/194 (42%), Gaps = 7/194 (3%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q ++ D+L EM G P+ N + + Q +A ++L+ +++ PD S++
Sbjct: 335 QWETSVDLLDEMAGRGVAPNTIHFNSAIVACGKGGQWEKAVELLREVTALGLTPDATSFN 394
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEMIEF 267
I A + + + +A+E++KEM L P I +A+ A W+ A+E+
Sbjct: 395 SAIAACTKSGRWKEALELLKEMPAKR-LKPD---AISYNSAIEACGKGGQWEMALELRRQ 450
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ KG + + C E + + + M +G P + ++ G+
Sbjct: 451 MPTKGLTPNVISSNIAIRACGERGRWQEGLELLRQMPAQGLTPNVITYNSAIKTCGKGGQ 510
Query: 328 WKLATVVRQRFAEL 341
W+ A + + EL
Sbjct: 511 WEKALDLLAKMKEL 524
>gi|255764587|gb|ACU33853.1| PPR1 protein [Capsicum annuum]
Length = 577
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 78/177 (44%), Gaps = 7/177 (3%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ ++L EMK P+ T N L+ LC + Q + +L M + P++ ++SI+
Sbjct: 220 DAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWEKVKTLLSEMVNLNINPNVHTFSIL 279
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA---NREMWKAVEMIEFLE 269
I + K DA E+M+ M+ G+ P +I +A + ++ +A + L
Sbjct: 280 IDGLCKEGKVEDADEVMRHMI-EKGVEPD---IITYSAIMDGYCLRGQVDRARRVFNVLR 335
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
KG Y +++ G + + A + ++++G P ++ GL VG
Sbjct: 336 DKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQKGLKPDTVTYSTILHGLIEVG 392
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/179 (19%), Positives = 75/179 (41%), Gaps = 4/179 (2%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+V + EM+ +G N + +S C ++ A VL ++ +++ +
Sbjct: 79 SAVVSLFREMRILGIPISDSILNIVTNSYCLRHRIDCAFSVLPIYLKTGIPFNVVTFNTL 138
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+G + K DAV + K++V P + M V L K + ++ +E+
Sbjct: 139 LGGLFAENKVTDAVVLFKKLVREKICEPNEVMYGTVMNGLSKRGHTEKTLSLLRIMEQGN 198
Query: 273 CPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ Y +V++ C++ L A + M ++ P I +++GL +G+W+
Sbjct: 199 TKPDVRTYSIVIDAL--CKDINLDAAINLLNEMKQKNIPPNIFTYNSLIDGLCKLGQWE 255
Score = 39.3 bits (90), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 3/86 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C++ V + I ++ SIG PD T N +++ C E +L+ M C +
Sbjct: 459 CKNDRVREAHAIFEKLPSIGLIPDVRTYNVMITGFCREGLFDEVKGILRKMEDNGCPANN 518
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
+Y++++ + K ++ V MKEM
Sbjct: 519 ITYNVIMQGFFRSNKISEIVSFMKEM 544
Score = 37.7 bits (86), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 1/176 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + V +L EM ++ +P+ T + L+ LC ++ +A +V++ M PD+ +YS
Sbjct: 253 QWEKVKTLLSEMVNLNINPNVHTFSILIDGLCKEGKVEDADEVMRHMIEKGVEPDIITYS 312
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++ R D + ++ + G+ P + + + KA+++ + +
Sbjct: 313 AIMDGYC-LRGQVDRARRVFNVLRDKGIKPNIFSYSILINGYCKKKNLAKAMQLFGEISQ 371
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
KG Y ++ G +E A K M G P I + ++ G G
Sbjct: 372 KGLKPDTVTYSTILHGLIEVGRIGDAKKIFDEMLRVGPTPDICLHSTLLFGYFKYG 427
>gi|125579821|gb|EAZ20967.1| hypothetical protein OsJ_36620 [Oryza sativa Japonica Group]
Length = 408
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 59/120 (49%), Gaps = 2/120 (1%)
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+D+L+EM G+ PD T L+ L ++ EA V + M+ + PD+ Y+++I
Sbjct: 100 SDLLVEMMGRGHTPDVVTFGALIHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISG 159
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CP 274
+ R A +++EM L + P + + + + + A ++ EF+E KG CP
Sbjct: 160 LCKKRMLPAAKNILEEM-LEKNVQPDEFVYATLIDGFIRSENLGDARKIFEFMEHKGVCP 218
Score = 45.1 bits (105), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 54/132 (40%), Gaps = 7/132 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LP A IL+ L P + L ++ +S+++ D I M+ G PD
Sbjct: 166 LPAAKNILEEMLEKNVQPDEFVYATLIDGFI----RSENLGDARKIFEFMEHKGVCPDIV 221
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+CN ++ C + EA + M C+PD +Y+ VI + D+ E +
Sbjct: 222 SCNAMIKGYCQFGMMSEAILCMSNMRKVGCIPDEFTYTTVISGYAKQEGDTDSAEGLFAN 281
Query: 233 VLNMGLMPRQGM 244
+ L P G+
Sbjct: 282 MQAEALSPNVGI 293
Score = 41.2 bits (95), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 15/168 (8%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G+ P+ N ++ +LC +A +LK M ++ C PD+ +++ +I +
Sbjct: 1 MRKRGFSPNVQIYNSVIDALCNCRSATQAMVILKQMFASGCDPDIITFNTLITGLCHEGH 60
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEFLERKGCPIGFQGY 280
A ++E + L P Q + E+ A + ++E + R P
Sbjct: 61 VRKAEHFLRE-AIRRELNPNQLSYTPLIHGFCMRGELMVASDLLVEMMGRGHTP------ 113
Query: 281 EVVVEGCLECREYILAGKTVMG------MTERGFIPYIKVRQKVVEGL 322
+VV G L ++AGK MTER P + + ++ GL
Sbjct: 114 DVVTFGAL-IHGLVVAGKVSEALIVREKMTERQVFPDVNIYNVLISGL 160
>gi|359485815|ref|XP_003633341.1| PREDICTED: pentatricopeptide repeat-containing protein
At5g65560-like [Vitis vinifera]
Length = 822
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/177 (24%), Positives = 75/177 (42%), Gaps = 2/177 (1%)
Query: 156 ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A +L E M +G P T N L++ + AA++L M C PD +Y+ ++
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKGNVNNAARLLDLMKENGCEPDEWTYNELVS 486
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
S K A +EMV GL P + + ++ A+ +++ +E GC
Sbjct: 487 GFSKWGKLESASFYFQEMV-ECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRMEEMGCN 545
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y V+ G + + A K M E+G +P + +++GL G + A
Sbjct: 546 PNVESYNAVINGLSKENRFSEAEKICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFA 602
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L LA + R ++ GC P + S + C V D+L EM G P
Sbjct: 249 LDLAFGVFDRMVKEGCDP----NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 304
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +++LCAI+ EA +++ M C P++++Y+ +I +S K A+ + +M
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CL 288
L GL+P + L A+++ ++E G Q Y +++G CL
Sbjct: 365 -LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL 420
Score = 45.4 bits (106), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 86/204 (42%), Gaps = 4/204 (1%)
Query: 90 IPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLER 148
+ + + I + Y +S H + +++L R +R P IR+L+ A
Sbjct: 82 VAVHKDTESVIQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNE 141
Query: 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
+ + VAD L E+ +G+ +CN L+ L + + A + K M ++ P L +
Sbjct: 142 E-EIRRVADFLNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLT 200
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268
++ +I +S K +A E++ + L P + NR + A + + +
Sbjct: 201 FNTLINILSKKGKVREA-ELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRM 259
Query: 269 ERKGCPIGFQGYEVVVEG-CLECR 291
++GC Y ++ G C E R
Sbjct: 260 VKEGCDPNSVTYSTLINGLCNEGR 283
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 50/212 (23%), Positives = 88/212 (41%), Gaps = 10/212 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L +GC P L S + + + +S + EM G +P+ + L+
Sbjct: 462 AARLLDLMKENGCEPDEWTYNELVSGF-SKWGKLESASFYFQEMVECGLNPNPVSYTALI 520
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ A +LK M C P++ESY+ VI +S + ++A ++ +MV GL
Sbjct: 521 DGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV-EQGL 579
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + L N A ++ +E++ C Y ++ G C+E GK
Sbjct: 580 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGL--CQE----GK 633
Query: 299 TVMG--MTERGFIPYIKVRQKVVEGLAGVGEW 328
M+E G P + +V GL G +
Sbjct: 634 ADEAERMSEIGCEPTLDTYSTLVSGLCRKGRF 665
Score = 40.8 bits (94), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 72/296 (24%), Positives = 120/296 (40%), Gaps = 47/296 (15%)
Query: 53 LLGSFEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPKIAYDYL 105
LL EE NPN S+ ++ + +R K+ D+M+E L P I Y L
Sbjct: 535 LLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ--GLLPNV---ITYTTL 589
Query: 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165
+ ++ A I + C+P L S+ + CQ + AD M I
Sbjct: 590 IDGLCRNGRT-QFAFKIFHDMEKRKCLP----NLYTYSSLIYGLCQ-EGKADEAERMSEI 643
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G P T + LVS LC + EA +++K M PD E Y ++ A + + A
Sbjct: 644 GCEPTLDTYSTLVSGLCRKGRFYEAEQLVKDMKERGFCPDREIYYSLLIAHCKNLEVDHA 703
Query: 226 VEMM-----KEMVLNMGL-------MPRQGMVIKVAAALRAN--REMWKAVEMIEFLERK 271
+++ K L++ + + + G V + A AL N + W A E++
Sbjct: 704 LKIFHSIEAKGFQLHLSIYRALICALCKAGQV-EEAQALFDNMLEKEWNADEIV------ 756
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ V+V+G L+ E L K + M + F P I+ + L+ +G+
Sbjct: 757 --------WTVLVDGLLKEGELDLCMKLLHIMESKNFTPNIQTYVILGRELSRIGK 804
>gi|30794106|gb|AAP40495.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A A+ + SG +P Q ++ +E C+ ++V ++L+EMK T
Sbjct: 366 AKALFDGMIASGLIPQAQAY----ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V +C+ L A ++K M ++ C P++ Y+ +I + DA+ ++KEM
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK-E 480
Query: 236 MGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G+ P ++I ++ A R + VEM+E G Y + G +E
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE----NGLKPNAFTYGAFISGYIEAS 536
Query: 292 EYILAGKTVMGMTERGFIP 310
E+ A K V M E G +P
Sbjct: 537 EFASADKYVKEMRECGVLP 555
Score = 44.7 bits (104), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 125/306 (40%), Gaps = 28/306 (9%)
Query: 47 YQQIPELLGSFEEACQNPNPF---SFLSNFPQNHR----IKVIDEMLESFIPLRPRSRPK 99
Y + E++ S C+ PN + + F QN R ++V+ EM E I P
Sbjct: 437 YNIVKEMIAS---GCR-PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA------PD 486
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I L L + A + L + +G P S ++E + S +
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS-EFASADKYV 545
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM+ G P+ C L++ C ++++EA + M + D ++Y++++ +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 220 RKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +DA E+ +EM G+ P G++I + L M KA + + + +G
Sbjct: 606 DKVDDAEEIFREM-RGKGIAPDVFSYGVLINGFSKL---GNMQKASSIFDEMVEEGLTPN 661
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++ G E A + + M+ +G P +++G G+ LA R
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD--LAEAFRL 719
Query: 337 RFAELK 342
F E+K
Sbjct: 720 -FDEMK 724
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 78/185 (42%), Gaps = 4/185 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + + C+ + V + +S+ G D T L++ L D++ +A ++ +
Sbjct: 558 VLCTGLINEYCKKEKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M PD+ SY ++I S A + EMV GL P + + +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV-EEGLTPNVIIYNMLLGGFCRSG 676
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
E+ KA E+++ + KG Y +++G + + A + M +G +P V
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYT 736
Query: 317 KVVEG 321
+V+G
Sbjct: 737 TLVDG 741
>gi|14532710|gb|AAK64156.1| unknown protein [Arabidopsis thaliana]
Length = 974
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A A+ + SG +P Q ++ +E C+ ++V ++L+EMK T
Sbjct: 366 AKALFDGMIASGLIPQAQAY----ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V +C+ L A ++K M ++ C P++ Y+ +I + DA+ ++KEM
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK-E 480
Query: 236 MGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G+ P ++I ++ A R + VEM+E G Y + G +E
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE----NGLKPNAFTYGAFISGYIEAS 536
Query: 292 EYILAGKTVMGMTERGFIP 310
E+ A K V M E G +P
Sbjct: 537 EFASADKYVKEMRECGVLP 555
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 28/306 (9%)
Query: 47 YQQIPELLGSFEEACQNPNPF---SFLSNFPQNHR----IKVIDEMLESFIPLRPRSRPK 99
Y + E++ S C+ PN + + F QN R ++V+ EM E I P
Sbjct: 437 YNIVKEMIAS---GCR-PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA------PD 486
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I L L + A + L + +G P S ++E + S +
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS-EFASADKYV 545
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM+ G P+ C L++ C +++EA + M + D ++Y++++ +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 220 RKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +DA E+ +EM G+ P G++I + L M KA + + + +G
Sbjct: 606 DKVDDAEEIFREM-RGKGIAPDVFSYGVLINGFSKL---GNMQKASSIFDEMVEEGLTPN 661
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++ G E A + + M+ +G P +++G G+ LA R
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD--LAEAFRL 719
Query: 337 RFAELK 342
F E+K
Sbjct: 720 -FDEMK 724
Score = 41.6 bits (96), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 4/185 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + + C+ V + +S+ G D T L++ L D++ +A ++ +
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M PD+ SY ++I S A + EMV GL P + + +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV-EEGLTPNVIIYNMLLGGFCRSG 676
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
E+ KA E+++ + KG Y +++G + + A + M +G +P V
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYT 736
Query: 317 KVVEG 321
+V+G
Sbjct: 737 TLVDG 741
>gi|147833070|emb|CAN77584.1| hypothetical protein VITISV_034996 [Vitis vinifera]
Length = 913
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 82/187 (43%), Gaps = 1/187 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + VA +L +M G P+ CN +++ +L +A + M S C P +
Sbjct: 416 REGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV 475
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I +S A + ++A ++KEM L G P + L +++ A+ +
Sbjct: 476 TYNTLINGLSKAERFSEAYALVKEM-LQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 534
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
KG + + +++ G + A + M +R +P + ++EG V +
Sbjct: 535 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRD 594
Query: 328 WKLATVV 334
++ A+ +
Sbjct: 595 FERASKI 601
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 99/232 (42%), Gaps = 20/232 (8%)
Query: 119 ALAILQRTLR-SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I QR GC P + L +A +E ++ + L +++G P+ T N L
Sbjct: 72 ALDIFQRMHEIFGCQPGIRSYNSLLNALIESNKWDEAES-FFLYFETMGLSPNLQTYNIL 130
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C Q +A ++L M PD+ SY +I +++ +DA+++ E
Sbjct: 131 IKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE------ 184
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMI---EFLER--KGCPI--GFQGYEVVVEGCLEC 290
MP +G+ VA +K +++ E ER KG + Y V++ G +C
Sbjct: 185 -MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC 243
Query: 291 REYILAGKTV--MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ + + M ERG Y ++ GL G G AT V + AE
Sbjct: 244 GKFDESFEIWHRMKKNERGQDLY--TYSTLIHGLCGSGNLDGATRVYKEMAE 293
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/202 (19%), Positives = 90/202 (44%), Gaps = 2/202 (0%)
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+L + + GC P P + + + ++ R + + M S G P T N L++
Sbjct: 425 GVLDQMTKHGCKPNPYVCNAVINGFV-RASKLEDALRFFGNMVSKGCFPTVVTYNTLING 483
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
L ++ EA ++K M P++ +YS+++ + +K + A+ + + L G P
Sbjct: 484 LSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ-ALEKGFKP 542
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
M + L ++ ++ A+++ ++++ C + ++EG + R++ A K
Sbjct: 543 DVKMHNIIIHGLCSSGKVEDALQLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIW 602
Query: 301 MGMTERGFIPYIKVRQKVVEGL 322
+ + G P I ++GL
Sbjct: 603 DHILQYGLQPDIISYNITLKGL 624
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 4/166 (2%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L E A VL M+ C P+ + VI A K DA+ MV +
Sbjct: 410 MINGLCREGRLDEVAGVLDQMTKHGCKPNPYVCNAVINGFVRASKLEDALRFFGNMV-SK 468
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + L +A +++ + +KG Y +++ G + ++ +A
Sbjct: 469 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLQKGWKPNMITYSLLMNGLCQGKKLDMA 528
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
E+GF P +K+ ++ GL G+ + A Q ++E+K
Sbjct: 529 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL---QLYSEMK 571
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 62/283 (21%), Positives = 118/283 (41%), Gaps = 31/283 (10%)
Query: 19 LLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQ 75
L F ++ +L+T ++ + K + + ELL +P+ FS+ +++ +
Sbjct: 112 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWGQGFSPDVFSYGTLINSLAK 171
Query: 76 N----HRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSG 130
N +K+ DEM E + P +A Y+ L+ + L A I +R L+
Sbjct: 172 NGYMSDALKLFDEMPERGVT------PDVACYNILIDGFFKKGDILN-ASEIWERLLKGP 224
Query: 131 CV--PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
V +P ++++ L + + +I MK D T + L+ LC L
Sbjct: 225 SVYPNIPSYNVMING--LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 282
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG--MVI 246
A +V K M+ PD+ Y+ ++ A + + +E+ K +M ++G V+
Sbjct: 283 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK-------VMEKEGCRTVV 335
Query: 247 KVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+R N ++ +A+ + E L K C Y V+V G
Sbjct: 336 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHG 378
Score = 41.2 bits (95), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+K +P+ + N +++ LC + E+ ++ M E DL +YS +I + +
Sbjct: 221 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 280
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A + KEM N G+ P + + LRA R + + +E+ + +E++GC Y
Sbjct: 281 LDGATRVYKEMAEN-GVSPDVVVYNTMLNGYLRAGR-IEECLELWKVMEKEGCRT-VVSY 337
Query: 281 EVVVEGCLE-------------------CREYILAGKTVMGMTERGFI 309
+++ G E C + + G V G+ + G++
Sbjct: 338 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYL 385
Score = 38.5 bits (88), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 35/144 (24%), Positives = 63/144 (43%), Gaps = 9/144 (6%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I Y L++ Q L +AL + + L G P ++ ++ + C S V D L
Sbjct: 510 ITYSLLMNGLCQG-KKLDMALNLWCQALEKGFKPDVKMHNII----IHGLCSSGKVEDAL 564
Query: 160 L---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
EMK P+ T N L+ + A+K+ + PD+ SY+I + +
Sbjct: 565 QLYSEMKQRNCVPNLVTHNTLMEGFYKVRDFERASKIWDHILQYGLQPDIISYNITLKGL 624
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
+ + +DAV + + V + G++P
Sbjct: 625 CSCHRISDAVGFLNDAV-DRGVLP 647
>gi|357440039|ref|XP_003590297.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355479345|gb|AES60548.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 661
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 56/296 (18%), Positives = 126/296 (42%), Gaps = 9/296 (3%)
Query: 1 MMIGAIKSCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA 60
MM+ + +++ R L + S+ +L T+ + +R V A+ ++ + +
Sbjct: 125 MMVDILGRMKAMDKMREILEEMRQ-ESLITLNTIAKVMRRFVGARQWKDAVRIFDDLQFL 183
Query: 61 CQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
N S + K +++ E ++ L+ P +L + ++ + A
Sbjct: 184 GLEKNTESMNVLLDTLCKEKFVEQAREIYLELKHYIAPNAHTFNILIHGWCNIRRVEEAH 243
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYL 177
+Q GC P ++ S ++ CQ Q+ V D+L EM++ P+ T +
Sbjct: 244 WTIQEMKGYGCRPC----VISYSTIIQCYCQEQNFDRVYDLLDEMQAQNCSPNVVTYTTI 299
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ +L ++ EA +V++ M++ C PD ++ +I + A + +DA + K +
Sbjct: 300 MCALAKAEKFEEALQVVERMNAVGCRPDTLFFNSLIYTLGRAGRIDDATHVFKVAMPKAS 359
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECRE 292
+ P + + + +A +++ +E+ G C Q Y +++ C + RE
Sbjct: 360 VAPNTSTYNSMISMFCYYAQEERAFGILKEMEKSGLCKPDIQTYHPLIKSCFKMRE 415
>gi|449449679|ref|XP_004142592.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
gi|449516715|ref|XP_004165392.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g08610-like [Cucumis sativus]
Length = 594
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 10/187 (5%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ V DI+ I PD C ++ D++ +A +VLK M + VPD+ +Y+
Sbjct: 155 EASRVVDIMASRNQI---PDFECCINMIRGFVNTDRMDKAVQVLKIMVMSGGVPDIITYN 211
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA---NREMWKAVEMIEF 267
+VIG + A+E++ +M L+ G P VI A +R N +AVE +
Sbjct: 212 MVIGCLCKQGHLESAIELLNDMSLS-GCPPD---VITYNAVIRHMFDNGCFDQAVEFWKE 267
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
RKG P Y +++E + R + A + + M G P + ++ G+
Sbjct: 268 QLRKGTPPYLITYTILIELVWKHRGTVCALEVLEEMANEGCYPDLVTYNSLINLTCKQGK 327
Query: 328 WKLATVV 334
++ A +V
Sbjct: 328 FEDAALV 334
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 51/210 (24%), Positives = 88/210 (41%), Gaps = 5/210 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADI 158
+ Y+ L++ T + AL I L G VP LL S L RR V +I
Sbjct: 313 VTYNSLINLTCKQGKFEDAALVI-DNLLFHGMVPDAVTYNTLLHS--LSRRGHWDEVDEI 369
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L M P TCN L++ LC L A L M S C+PD+ +Y+ ++GA+
Sbjct: 370 LKIMSISLQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCK 429
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
++A +++ ++ + P V L M KA+ + + G
Sbjct: 430 EGMVDEAFQLL-HLLTDTACSPGLISYNTVLDGLSRKGYMDKAMSLYSQMMENGIIPDDT 488
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ ++ G +++ A +T+ G+ + G+
Sbjct: 489 THRSIIWGFCRSNKFVEAVETLKGILKGGY 518
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 8/154 (5%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
S ++R S + + + L+ +G D T N ++ C +L+EA++V+ M+S
Sbjct: 109 FSEKLTKKRFGSHNCSSLYLDGPFVG--NDEETNNVILQKFCYKGKLMEASRVVDIMASR 166
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+PD E +I + + AV+++K MV++ G+ P V L +
Sbjct: 167 NQIPDFECCINMIRGFVNTDRMDKAVQVLKIMVMSGGV-PDIITYNMVIGCLCKQGHLES 225
Query: 261 AVEMIEFLERKGCPIGFQGYEVVV-----EGCLE 289
A+E++ + GCP Y V+ GC +
Sbjct: 226 AIELLNDMSLSGCPPDVITYNAVIRHMFDNGCFD 259
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 48/242 (19%), Positives = 96/242 (39%), Gaps = 43/242 (17%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ + LR G P + +L+ W R + ++L EM + G +PD T N L
Sbjct: 261 AVEFWKEQLRKGTPPYLITYTILIELVWKHR--GTVCALEVLEEMANEGCYPDLVTYNSL 318
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
++ C + +AA V+ + VPD +Y+ ++ ++S ++ E++K ++++
Sbjct: 319 INLTCKQGKFEDAALVIDNLLFHGMVPDAVTYNTLLHSLSRRGHWDEVDEILK--IMSIS 376
Query: 238 LMPRQGMVIKV-----------AAALRANREMW-------------------------KA 261
L P + V +A+ +M+ +A
Sbjct: 377 LQPPTVVTCNVLINGLCKNGLLDSAINFLNQMFSYNCLPDIITYNTLLGALCKEGMVDEA 436
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVE 320
+++ L C G Y V++G L + Y+ ++ M E G IP + ++
Sbjct: 437 FQLLHLLTDTACSPGLISYNTVLDG-LSRKGYMDKAMSLYSQMMENGIIPDDTTHRSIIW 495
Query: 321 GL 322
G
Sbjct: 496 GF 497
>gi|357164338|ref|XP_003580022.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Brachypodium distachyon]
Length = 966
Score = 51.2 bits (121), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/189 (22%), Positives = 84/189 (44%), Gaps = 7/189 (3%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
C P + + A ++ C++Q V+D +L M + G P+ + L+ C I ++
Sbjct: 602 CTIAPNV--VTYGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGKI 659
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
A +V M+ +P + +Y+ +I M + + A++++ EM LN P
Sbjct: 660 DNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKDGRLDLAMKVLSEM-LNDSCNPNVVTYTA 718
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
+ L E+ KA+ ++ +E KGC Y +++G + + + K M +G
Sbjct: 719 MIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKG 778
Query: 308 FIP-YIKVR 315
P Y+ R
Sbjct: 779 CAPNYVTYR 787
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/189 (20%), Positives = 81/189 (42%), Gaps = 15/189 (7%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+S+G P+ T L+ + QL++A + M A C P+ +YS +I + A
Sbjct: 512 EMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAG 571
Query: 221 KTNDAVEMMKEMVLNMG---------------LMPRQGMVIKVAAALRANREMWKAVEMI 265
+ A E+ ++++ G + P + L +++ A E++
Sbjct: 572 EIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELL 631
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC Y+ +++G + + A + + MT+ G++P + +++ +
Sbjct: 632 DAMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYTSLIDRMFKD 691
Query: 326 GEWKLATVV 334
G LA V
Sbjct: 692 GRLDLAMKV 700
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 8/172 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L L +GC P ++ A ++ C+ + + + L M GY P T
Sbjct: 627 AHELLDAMLAAGCEP----NQIVYDALIDGFCKIGKIDNAQEVFLRMTKCGYLPSVHTYT 682
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ + +L A KVL M + C P++ +Y+ +I +S + A+ ++ M
Sbjct: 683 SLIDRMFKDGRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLME-E 741
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
G P + L + ++++ + + KGC + Y V++ C
Sbjct: 742 KGCSPNVVTYTALIDGLGKTGKADASLKLFKQMNSKGCAPNYVTYRVLINHC 793
Score = 43.5 bits (101), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 50/228 (21%), Positives = 88/228 (38%), Gaps = 24/228 (10%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A IL+ +R G VP + + CQ++ V L EMK G +PD T
Sbjct: 436 AFQILKEMMRKGFVPDTSTY----TKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYT 491
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ S C + +A M S C P++ +Y+ ++ A +++ A ++ MV +
Sbjct: 492 ILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIFHRMV-D 550
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIE--------------FLERKGCPIG--FQG 279
P + L E+ KA E+ E F C I
Sbjct: 551 AACYPNAVTYSALIDGLCKAGEIQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVT 610
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y +++G + ++ A + + M G P V +++G +G+
Sbjct: 611 YGALIDGLCKAQKVSDAHELLDAMLAAGCEPNQIVYDALIDGFCKIGK 658
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 61/312 (19%), Positives = 121/312 (38%), Gaps = 19/312 (6%)
Query: 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPL 92
T + + AK ++ L + A NP+ +++ + +I++ F +
Sbjct: 454 TYTKVITFLCQAKKVEKSFLLFQEMKRAGVNPDVYTYTILIDSFCKAGLIEQARSWFDEM 513
Query: 93 RPR--SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-----VPQIRLLLSSAW 145
R S + Y LL L+S L A I R + + C P I L +
Sbjct: 514 RSVGCSPNVVTYTALLHAYLKS-KQLIQAHDIFHRMVDAACYPNAVTYSALIDGLCKAGE 572
Query: 146 LERRCQ--------SQSV-ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ C+ S +V +D E + P+ T L+ LC ++ +A ++L
Sbjct: 573 IQKACEVYEKLIGTSGNVESDFYFEGNDTCTIAPNVVTYGALIDGLCKAQKVSDAHELLD 632
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M +A C P+ Y +I K ++A E+ M G +P + + +
Sbjct: 633 AMLAAGCEPNQIVYDALIDGFCKIGKIDNAQEVFLRMT-KCGYLPSVHTYTSLIDRMFKD 691
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ A++++ + C Y +++G + E A + M E+G P +
Sbjct: 692 GRLDLAMKVLSEMLNDSCNPNVVTYTAMIDGLSKVGEIEKALNLLSLMEEKGCSPNVVTY 751
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 752 TALIDGLGKTGK 763
Score = 38.9 bits (89), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 33/158 (20%), Positives = 64/158 (40%), Gaps = 1/158 (0%)
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC + + +A ++LK M VPD +Y+ VI + A+K + + +EM G+ P
Sbjct: 427 LCGVGKFEKAFQILKEMMRKGFVPDTSTYTKVITFLCQAKKVEKSFLLFQEMK-RAGVNP 485
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + + +A + + GC Y ++ L+ ++ I A
Sbjct: 486 DVYTYTILIDSFCKAGLIEQARSWFDEMRSVGCSPNVVTYTALLHAYLKSKQLIQAHDIF 545
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
M + P +++GL GE + A V ++
Sbjct: 546 HRMVDAACYPNAVTYSALIDGLCKAGEIQKACEVYEKL 583
>gi|449475988|ref|XP_004154607.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 950
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 116/261 (44%), Gaps = 17/261 (6%)
Query: 83 DEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRL 139
++ +ESF +R +P + A++ +L + ++ LALA+ + L+ P V +
Sbjct: 145 EKAVESFSLMRDFDCKPDLFAFNLILHFLVRK-EAFLLALAVYNQMLKCNLNPDVVTYGI 203
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ L + C++Q + EM G P+ + ++S LC ++ +A ++ M +
Sbjct: 204 LIHG--LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRA 261
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--- 256
+ C DL +Y++++ + +DA +++ + + ++ G + RA R
Sbjct: 262 SGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEE 321
Query: 257 -EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKV 314
MW + + R+ Y +++ G L + T++G MTERG P
Sbjct: 322 AHMW-----YQKMLRENIKPDVMLYTIMIRG-LSQEGRVTEALTLLGEMTERGLRPDTIC 375
Query: 315 RQKVVEGLAGVGEWKLATVVR 335
+++G +G A +R
Sbjct: 376 YNALIKGFCDMGYLDEAESLR 396
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 146 LERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ER C+S + +L+++ G PD T N L++ C + A K+ K M
Sbjct: 498 MERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH 557
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+PD +Y +I + A + DA+E+ ++MV
Sbjct: 558 MPDSVTYGTLIDGLYRAGRNEDALEIFEQMV 588
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G PD N L+ C + L EA + +S +C P+ +YSI+I M
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMC 419
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RAN-----REMWKAVEMIE----F 267
N A + KEM +G +P + L +AN R ++ +E++ F
Sbjct: 420 KNGLINKAQHIFKEME-KLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLF 478
Query: 268 LE-RKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
L +G F +V++E E + A K +M + + G +P I+ ++ G
Sbjct: 479 LRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCK 538
Query: 325 VGE 327
G
Sbjct: 539 FGN 541
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 58/124 (46%), Gaps = 5/124 (4%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + ++ LC +++A K+L + + +PD+ +Y+I+I N A ++
Sbjct: 490 DIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLF 549
Query: 230 KEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
KEM L G MP + L RA R A+E+ E + +KGC Y+ ++
Sbjct: 550 KEMQLK-GHMPDSVTYGTLIDGLYRAGRNE-DALEIFEQMVKKGCVPESSTYKTIMT--W 605
Query: 289 ECRE 292
CRE
Sbjct: 606 SCRE 609
>gi|449455956|ref|XP_004145716.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
gi|449492939|ref|XP_004159147.1| PREDICTED: pentatricopeptide repeat-containing protein At5g16420,
mitochondrial-like [Cucumis sativus]
Length = 535
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 73/167 (43%), Gaps = 1/167 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
G P+ TCN L+ +LC + + A KV M S VP++ +Y+ ++G +
Sbjct: 186 FGVVPNVFTCNILIKALCKKNDVEGARKVFDEMPSMGIVPNVVTYTTILGGYVSRGDMIG 245
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A + E+ + G +P + AV++++ +E G Y V++
Sbjct: 246 AKRVFGEL-FDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVII 304
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G + R+ A + M E+ +IP + KV++ L G G K A
Sbjct: 305 LGYCKERKSGEALNLLNDMLEKKYIPNSALCCKVIDVLCGEGRVKEA 351
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 70/168 (41%), Gaps = 4/168 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
E+ G+ PD T L+ + +A KV+ M P+ +Y ++I R
Sbjct: 252 ELFDHGWLPDATTYTILMDGYVKQGRFTDAVKVMDEMEENGVEPNDITYGVIILGYCKER 311
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K+ +A+ ++ +M L +P + KV L + +A +M E L +K C
Sbjct: 312 KSGEALNLLNDM-LEKKYIPNSALCCKVIDVLCGEGRVKEACKMWEKLLKKNCTPDNAIT 370
Query: 281 EVVVEGCLECRE-YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ C+E I + + ERG I + ++ G+ +GE
Sbjct: 371 STLIHWL--CKEGNIWEARKLFNEFERGTISSLLTYNTLIAGMCEMGE 416
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 68/151 (45%), Gaps = 8/151 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV--ADILLEMKSIGYHPDCGTCNY 176
A + ++ L+ C P I +S + C+ ++ A L G T N
Sbjct: 351 ACKMWEKLLKKNCTPDNAI----TSTLIHWLCKEGNIWEARKLFNEFERGTISSLLTYNT 406
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
L++ +C + +L EAA++ M CVP+ +Y+++I K + +++++EM+
Sbjct: 407 LIAGMCEMGELCEAARLWDDMLEKGCVPNEFTYNMLIKGFLKVGKAKEVIKVVEEMLDKG 466
Query: 237 GLMPRQGMVIKVAAALRANR--EMWKAVEMI 265
L+ +I V L+ + E+ + MI
Sbjct: 467 CLLNESTYLILVEGLLKLGKREELLNILSMI 497
>gi|255576901|ref|XP_002529336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223531207|gb|EEF33053.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 610
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 47/103 (45%), Gaps = 1/103 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ IL EM PD + N ++ LC + EA+ + + M C PD+ SY IV
Sbjct: 310 ETAYKILDEMMENRCKPDVISYNVILGELCKDGKWSEASDLFEDMPRRGCAPDVVSYRIV 369
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+S A + DA ++ EMV G PR + K L N
Sbjct: 370 FDGLSDAMEFKDAAFILDEMVFK-GFAPRSSSICKFINRLCQN 411
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 63/262 (24%), Positives = 111/262 (42%), Gaps = 38/262 (14%)
Query: 48 QQIPEL-LGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-- 104
Q+ P+L L F+ NPNP F + + D M+ R K+ ++
Sbjct: 21 QEDPKLALHLFQHPNSNPNPKPF------RYSLLCYDLMITKL------GRAKMFHEMEQ 68
Query: 105 -LLSYTLQS--LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS-----QSVA 156
LL + Q+ + PL I+ R+G +PQ L + RCQ ++
Sbjct: 69 ILLQFKTQTRLVAKEPLFCNIITFYGRAG---LPQNALKMFDEMPLYRCQRTIKSYNTLL 125
Query: 157 DILLEMK----------SIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
++L+ K +I H PD T N ++ LC+ ++ +A KVL M + + VP
Sbjct: 126 NVLMICKEFDVMREHFVNIKRHVKPDGCTFNIMIRGLCSDGRVDDALKVLDEMKNRDLVP 185
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264
+ ++ +I + K +A ++ MV GL P + + + L A E+ A+ +
Sbjct: 186 NQVTFGTLIYGLCLNLKLKEAFKLKDYMVNVHGLCPNEYVYATLIKGLCAVGELSFALRL 245
Query: 265 IEFLERKGCPIGFQGYEVVVEG 286
E +ER G + Y ++ G
Sbjct: 246 KEEMERDGVKVDSAIYSTLISG 267
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/184 (21%), Positives = 68/184 (36%), Gaps = 36/184 (19%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ V +L+EM+ G D T N +++ C A K+L M C PD+ SY+
Sbjct: 273 RKDEVFGVLMEMELKGCKADTVTYNVMINGFCKDKDFETAYKILDEMMENRCKPDVISYN 332
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+++G + K ++A ++ ++M R
Sbjct: 333 VILGELCKDGKWSEASDLFEDM------------------------------------PR 356
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
+GC Y +V +G + E+ A + M +GF P K + L G+ L
Sbjct: 357 RGCAPDVVSYRIVFDGLSDAMEFKDAAFILDEMVFKGFAPRSSSICKFINRLCQNGDEDL 416
Query: 331 ATVV 334
V
Sbjct: 417 VWSV 420
>gi|42567170|ref|NP_194410.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|332659854|gb|AEE85254.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 369
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/231 (22%), Positives = 98/231 (42%), Gaps = 39/231 (16%)
Query: 139 LLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+++ V ++L MK G P+ T + L++ LC +L +A + L
Sbjct: 48 VVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLH 107
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S + P++ ++S +I A + K + V+ + +M++ M + P + L +
Sbjct: 108 EMDSKKINPNVITFSALIDAYAKRGKLS-KVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 166
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC------------------------- 290
+ +A++M++ + KGC Y + G +
Sbjct: 167 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 226
Query: 291 ----REYILAGKT-----VMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y AGK V G MT G IP I+ V+ GL GE + A
Sbjct: 227 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKA 277
>gi|302757525|ref|XP_002962186.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
gi|300170845|gb|EFJ37446.1| hypothetical protein SELMODRAFT_76934 [Selaginella moellendorffii]
Length = 855
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 81/183 (44%), Gaps = 10/183 (5%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ ++ C+ V D +LL+M PD T N LV+ ++L +A ++ K +SS
Sbjct: 268 NSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANRLDDALELFKLLSS 327
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
C P+ +Y+ +I + A++ +A E + + VIK L ++ +
Sbjct: 328 YGCKPNAATYTTIIQGLYDAQRMEEAKAFFDEALDVISYTT----VIK---GLADSKRID 380
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A E+ E L+ GC Y V++G L+ K M+ +P V+
Sbjct: 381 EACELFEKLKTAGCSPNVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYTVVI 440
Query: 320 EGL 322
+GL
Sbjct: 441 DGL 443
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 54/253 (21%), Positives = 99/253 (39%), Gaps = 38/253 (15%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL L+ +G +P V ++L+ R+ ++ LEM S+G P + N +
Sbjct: 4 ALDCLKEMHTTGLMPDVVNCNIVLNGLCKARKIDK--AIELFLEMPSMGCEPTIVSYNTV 61
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLES----------------------------- 208
+S L +ID++ EA K M C PD+ +
Sbjct: 62 ISGLASIDKMDEAYKFFNSMIDNGCEPDVIAFTTLIHGFCKAGQPQVGHMLLNQALKRFR 121
Query: 209 -----YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
Y+ VI A + ++++EM L G +P + L + +A E
Sbjct: 122 PDVFLYTSVIHGYCKAGDLDTGFKILEEM-LAAGCIPDAAAYFVLIDPLCKLGRVDEAYE 180
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+ E + + GC + + ++E + A + M ERG+ PY++V+ ++ L
Sbjct: 181 LFERMRKSGCLGDYVTFMTLIEALSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALC 240
Query: 324 GVGEWKLATVVRQ 336
G+ A + Q
Sbjct: 241 KAGKVDEANEIYQ 253
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 91/222 (40%), Gaps = 7/222 (3%)
Query: 122 ILQRTLRSGCVP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
IL+ +SG P L+ LER Q+ V D M + G P+ T N L+
Sbjct: 630 ILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYD---RMVASGIKPNAVTFNVLMH 686
Query: 180 SLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L + A + K M E P L SY+I+I + A + ++A +EM+ + G+
Sbjct: 687 GLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMI-DRGI 745
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + +L + +A +++E + + G Q Y ++ G ++ A
Sbjct: 746 IPECHTYTSLIYSLAKAGRIPEAKKLVEDMVKLGVNPDVQAYSALITGLIDSSMVDTAWD 805
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M +RG P + + G G V+Q F++
Sbjct: 806 VFQEMMKRGCAPNEVTYKVLRRGFRAAGRALDLEAVKQHFSQ 847
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 46/208 (22%), Positives = 90/208 (43%), Gaps = 8/208 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
K+++EML + P A ++L L L + A + +R +SGC+
Sbjct: 144 FKILEEMLAA------GCIPDAAAYFVLIDPLCKLGRVDEAYELFERMRKSGCLGDYVTF 197
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+ L A L + ++ EM GY P + L+ +LC ++ EA ++ + +
Sbjct: 198 MTLIEA-LSNHGKLDEACELYREMIERGYEPYLEVQDSLIFALCKAGKVDEANEIYQTVV 256
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
+ + +Y+ ++ + +D ++++ +MV Q I VA RANR +
Sbjct: 257 AKKVATSRVAYNSLMDGYCKLGRVDDGLKLLLQMVECDNFPDIQTYNILVAGFSRANR-L 315
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEG 286
A+E+ + L GC Y +++G
Sbjct: 316 DDALELFKLLSSYGCKPNAATYTTIIQG 343
Score = 43.9 bits (102), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 58/257 (22%), Positives = 104/257 (40%), Gaps = 16/257 (6%)
Query: 78 RIKVIDEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-- 133
++ +I+E E +R R P + + LLSY L S A +L GC P
Sbjct: 515 KLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYL-SKGRAEEAYQVLTEMTARGCAPDV 573
Query: 134 ---VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
I LL S+ R +++ V D ++E G PD T ++ + I + A
Sbjct: 574 ILYTSLIDLLFSTG---RVPEARHVFDSMIEK---GCAPDALTYGTIIQNFSKIGNVEAA 627
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
++L+ M+ + PD +Y+ ++ + + A + MV + G+ P +
Sbjct: 628 GEILELMAKSGVGPDCFAYNSLMDGYVKLERVDQAFGVYDRMVAS-GIKPNAVTFNVLMH 686
Query: 251 ALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
L + + +A + E LE+ P Y ++++G + A M +RG I
Sbjct: 687 GLFKDGKTDRAFSLFKEMLEKDEVPPTLVSYTILIDGLGKAGRVSEAFSQFQEMIDRGII 746
Query: 310 PYIKVRQKVVEGLAGVG 326
P ++ LA G
Sbjct: 747 PECHTYTSLIYSLAKAG 763
Score = 41.6 bits (96), Expect = 0.57, Method: Compositional matrix adjust.
Identities = 44/211 (20%), Positives = 89/211 (42%), Gaps = 8/211 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCGTCN 175
A + ++ +GC P ++ +A ++ ++ + D L + + P T
Sbjct: 382 ACELFEKLKTAGCSP----NVVAYTAVIDGLLKAGRIEDGLKNFEDMSGSSCVPTRTTYT 437
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++ LC L +A KV + M CVPD +Y+ +I S A K ++A +++ +++L
Sbjct: 438 VVIDGLCKAQMLPDACKVFEQMVQKGCVPDTITYTTLIDGFSKASKMDEARKLL-DVMLT 496
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + + +A E+I + +GC G + ++ L
Sbjct: 497 KGPEPTAVTYGSIVHGFCKLDMINEAKEVIAQMRERGCEPGLFIFTSLLSYYLSKGRAEE 556
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + + MT RG P + + +++ L G
Sbjct: 557 AYQVLTEMTARGCAPDVILYTSLIDLLFSTG 587
>gi|413953163|gb|AFW85812.1| hypothetical protein ZEAMMB73_202457 [Zea mays]
Length = 731
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 80/179 (44%), Gaps = 8/179 (4%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G P+ T N LV +LC EA +L+ M A C P++ +Y+ ++ A A +
Sbjct: 181 MLSDGVAPNVYTYNILVRALCGRGHRKEALSILRDMRGAGCGPNVVTYNTLVAAFFRAGE 240
Query: 222 TNDA---VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
+ A V MM+E L L+ MV + A +M A ++ + + R+G
Sbjct: 241 VDGAERLVGMMREGGLKPNLVTFNSMVNGMCKA----GKMEDARKVFDEMVREGLAPDGV 296
Query: 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-TVVRQ 336
Y +V G + A MT++G +P + ++ + G + A T+VRQ
Sbjct: 297 SYNTLVGGYCKAGCSHEALSVFAEMTQKGIMPDVVTFTSLIHVMCKAGNLERAVTLVRQ 355
Score = 40.8 bits (94), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 41/193 (21%), Positives = 84/193 (43%), Gaps = 8/193 (4%)
Query: 136 QIRLLLSSAWLERRCQSQSVADILLE---MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q+ + +A ++ C+ + D LL MK P N L++ C + ++ EA +
Sbjct: 362 QMNEVTFTALIDGFCKKGFLDDALLAVRGMKQCRIKPSVVCYNALINGYCMVGRMDEARE 421
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+L M + PD+ +YS +I A T+ A E+ ++M L G++P + L
Sbjct: 422 LLHEMEAKGLKPDVVTYSTIISAYCKNCDTHSAFELNQQM-LEKGVLPDAITYSSLIRVL 480
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG--MTERGFIP 310
+ + A + + + + G Y +++G C+E + + M + G +P
Sbjct: 481 CGEKRLSDAHVLFKNMIKLGLQPDEFTYTSLIDG--HCKEGNVESALSLHDKMVKAGVLP 538
Query: 311 YIKVRQKVVEGLA 323
+ ++ GL+
Sbjct: 539 DVVTYSVLINGLS 551
>gi|222616496|gb|EEE52628.1| hypothetical protein OsJ_34969 [Oryza sativa Japonica Group]
Length = 781
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 51/198 (25%), Positives = 82/198 (41%), Gaps = 40/198 (20%)
Query: 150 CQSQ---SVADILLEMKSIGYHPDCGTCNYLVSSLC----AID----------------- 185
CQ+ + AD+L M S+ PD +C ++SSLC A D
Sbjct: 217 CQAHRPAAAADLLCCMPSLLLDPDPASCRAVLSSLCQYASAQDAVAFLDKMCHWGISPSR 276
Query: 186 --------------QLVEAAKVLKG-MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
++VEA +V+K M S P L + + + A S + + E+
Sbjct: 277 SDYHAVFEALLQEGKVVEAYEVMKNKMGSNRVAPALAYFKLTMQAFSKCLEFDSVEEVFD 336
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
EM+L GL+P + AL ++ +A +M+ +E GCP + + VVV GC+
Sbjct: 337 EMLLR-GLVPDVDVYNVYIGALCRKGDLARARQMMTCMEHAGCPPDVRTFGVVVAGCMSA 395
Query: 291 REYILAGKTVMGMTERGF 308
+ + V T RG
Sbjct: 396 GDMGTVRELVQEATRRGL 413
>gi|449508786|ref|XP_004163411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+LLS++ SV IL M + G++PD T + V SLC++ + EA +++K
Sbjct: 126 FHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKE 185
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+S PD+ +Y+ ++ + +R + + EM + G P + + +
Sbjct: 186 LSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSN 245
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG----MTERGFIPY 311
+ +A+ ++ L ++G Y +++G C+ R G +G M E G P
Sbjct: 246 NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGR-----GAEAIGVYKKMKEVGLEPD 300
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ ++ GL+ G K A AE+
Sbjct: 301 VVTFNTLIFGLSKSGRVKEARNFLDIMAEM 330
>gi|414590862|tpg|DAA41433.1| TPA: hypothetical protein ZEAMMB73_769800 [Zea mays]
Length = 1295
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 60/251 (23%), Positives = 112/251 (44%), Gaps = 22/251 (8%)
Query: 86 LESFIPLRPRSRP---KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLS 142
L++F+P R R + DY + + P+ ++ L +++ V IR+ +
Sbjct: 750 LQAFLPRRIREVRCLIRSIVDYCGNAGSELFELAPMLVSNLGQSMTLLQVYAAVIRIFVE 809
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S+ E D LL + K+IG D CN+L+ L +Q++ A + M S
Sbjct: 810 SSMFE---------DALLTYIQAKNIGV--DRRLCNFLLKCLVEGNQIMYARSLFDDMKS 858
Query: 200 AECVPDLESYSIVIGAMSTARKT--NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
P++ SYSI++ + ++ +A E++ EM N G+ P L +R+
Sbjct: 859 CGPSPNVCSYSILMSMYTHGERSCLEEAFELLCEMESN-GVRPNATTYGTYLYGLCRSRQ 917
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQ 316
+ A + ++ L + G P + V+ G C E + A + GM + G++P +
Sbjct: 918 VTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCE-GQVDKAIEVFHGMKKCGYVPDVHSYS 976
Query: 317 KVVEGLAGVGE 327
+V+GL G+
Sbjct: 977 ILVDGLCKQGD 987
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTC-NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
R Q S D L + G P C N ++ C Q+ +A +V GM VPD+
Sbjct: 914 RSRQVTSAWDFLQTLSQSG-GPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMKKCGYVPDV 972
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SYSI++ + +M++EM N G+ P Q + L ++ A+++ +
Sbjct: 973 HSYSILVDGLCKQGDLLKGYDMLEEMARN-GICPNQVSYSSLLHGLCKTGQVALALKIFK 1031
Query: 267 FLERKGCPIGFQGYEVVVEGCLE 289
L+ G Y +++ GC +
Sbjct: 1032 NLQDHGFEHDQINYSIILHGCCQ 1054
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 44/208 (21%), Positives = 86/208 (41%), Gaps = 15/208 (7%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLV 178
+L+ R+G P Q+ S+ L C++ VA I ++ G+ D + ++
Sbjct: 994 MLEEMARNGICP-NQVSY---SSLLHGLCKTGQVALALKIFKNLQDHGFEHDQINYSIIL 1049
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
C L + + M PD+ +Y+ +I A+ R DA+ + E++L GL
Sbjct: 1050 HGCCQHLDLKAISDLWFDMIHHNIAPDVYNYTSLIYALCRHRNLQDALGVF-ELMLENGL 1108
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG----YEVVVEGCLECREYI 294
P ++ + + + E FL+R +G Y V++ G + +Y
Sbjct: 1109 SPN---IVTCTILVDSFSKQGLVGEAFLFLDRMHQSLGIVPNLCMYRVMINGLCKTNKYS 1165
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGL 322
M +RG++P + + ++EG
Sbjct: 1166 GVWNVFADMIKRGYVPDVVLYSIIIEGF 1193
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 43/183 (23%), Positives = 76/183 (41%), Gaps = 8/183 (4%)
Query: 131 CVPVPQI---RLLLS-SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
C P P + +L+S ER C ++ ++L EM+S G P+ T + LC Q
Sbjct: 859 CGPSPNVCSYSILMSMYTHGERSCLEEAF-ELLCEMESNGVRPNATTYGTYLYGLCRSRQ 917
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
+ A L+ +S + ++ VI + + A+E+ M G +P
Sbjct: 918 VTSAWDFLQTLSQSGGPCSNYCFNAVIHGFCCEGQVDKAIEVFHGMK-KCGYVPDVHSYS 976
Query: 247 KVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L ++ K +M+E + R G CP Y ++ G + + LA K + +
Sbjct: 977 ILVDGLCKQGDLLKGYDMLEEMARNGICPNQVS-YSSLLHGLCKTGQVALALKIFKNLQD 1035
Query: 306 RGF 308
GF
Sbjct: 1036 HGF 1038
>gi|449434442|ref|XP_004135005.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like [Cucumis sativus]
Length = 464
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 92/210 (43%), Gaps = 10/210 (4%)
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+LLS++ SV IL M + G++PD T + V SLC++ + EA +++K
Sbjct: 126 FHILLSTSGNRPDSTLASVQQILNFMVTNGFNPDKVTADLAVRSLCSVGLVDEAVELVKE 185
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
+S PD+ +Y+ ++ + +R + + EM + G P + + +
Sbjct: 186 LSQKHTPPDIYTYNHLVKQLCKSRALSTVYNFIVEMRSSCGAKPDLVTYTILIDNVCNSN 245
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMG----MTERGFIPY 311
+ +A+ ++ L ++G Y +++G C+ R G +G M E G P
Sbjct: 246 NLREAMRLVSLLYKEGFKPDCFVYNTIMKGYCMVGR-----GAEAIGVYKKMKEVGLEPD 300
Query: 312 IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ ++ GL+ G K A AE+
Sbjct: 301 VVTFNTLIFGLSKSGRVKEARNFLDIMAEM 330
>gi|18424537|ref|NP_568948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170898|sp|Q9FIT7.1|PP442_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g61990, mitochondrial; Flags: Precursor
gi|10176917|dbj|BAB10161.1| unnamed protein product [Arabidopsis thaliana]
gi|332010163|gb|AED97546.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 974
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A A+ + SG +P Q ++ +E C+ ++V ++L+EMK T
Sbjct: 366 AKALFDGMIASGLIPQAQAY----ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V +C+ L A ++K M ++ C P++ Y+ +I + DA+ ++KEM
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK-E 480
Query: 236 MGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G+ P ++I ++ A R + VEM+E G Y + G +E
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE----NGLKPNAFTYGAFISGYIEAS 536
Query: 292 EYILAGKTVMGMTERGFIP 310
E+ A K V M E G +P
Sbjct: 537 EFASADKYVKEMRECGVLP 555
Score = 43.5 bits (101), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 28/306 (9%)
Query: 47 YQQIPELLGSFEEACQNPNPF---SFLSNFPQNHR----IKVIDEMLESFIPLRPRSRPK 99
Y + E++ S C+ PN + + F QN R ++V+ EM E I P
Sbjct: 437 YNIVKEMIAS---GCR-PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA------PD 486
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I L L + A + L + +G P S ++E + S +
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS-EFASADKYV 545
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM+ G P+ C L++ C +++EA + M + D ++Y++++ +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 220 RKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +DA E+ +EM G+ P G++I + L M KA + + + +G
Sbjct: 606 DKVDDAEEIFREM-RGKGIAPDVFSYGVLINGFSKL---GNMQKASSIFDEMVEEGLTPN 661
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++ G E A + + M+ +G P +++G G+ LA R
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD--LAEAFRL 719
Query: 337 RFAELK 342
F E+K
Sbjct: 720 -FDEMK 724
Score = 41.6 bits (96), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 4/185 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + + C+ V + +S+ G D T L++ L D++ +A ++ +
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M PD+ SY ++I S A + EMV GL P + + +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV-EEGLTPNVIIYNMLLGGFCRSG 676
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
E+ KA E+++ + KG Y +++G + + A + M +G +P V
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYT 736
Query: 317 KVVEG 321
+V+G
Sbjct: 737 TLVDG 741
>gi|224140601|ref|XP_002323670.1| predicted protein [Populus trichocarpa]
gi|222868300|gb|EEF05431.1| predicted protein [Populus trichocarpa]
Length = 535
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 47/228 (20%), Positives = 103/228 (45%), Gaps = 8/228 (3%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A +L + ++ G P V + +L++S + Q Q+ + M IG P+ T N L
Sbjct: 195 AKRVLDQMMQKGFNPNVATLTILINSFC--KMGQLQNTFQVFEVMDRIGCKPNIQTYNCL 252
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ +C + ++ EA ++++ + PD+ +Y+ ++ ++++A+E++ E + MG
Sbjct: 253 LKGMCYVGRIDEAFELMEDIKKTTVEPDIYTYTAMMDGFCKVGRSDEAMELLNE-AMEMG 311
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
L P + K +++ ++++ C + Y ++ G L + +LAG
Sbjct: 312 LAPNVVTFNTLLDGYAKEGRPLKGFGVLKLMKQRKCMPDYISYSTLLHGLLLWGK-VLAG 370
Query: 298 KTVMG-MTERGFIPYIKVRQKVVEGL--AGVGEWKLATVVRQRFAELK 342
+ M G ++ +V GL + E L V + F ++K
Sbjct: 371 LRIFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMK 418
Score = 42.7 bits (99), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 46/165 (27%), Positives = 75/165 (45%), Gaps = 8/165 (4%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLC----AIDQLVEAA-KVLKGMSSAECVPDLESYSIV 212
I EM+ G D N LV LC + LVE A +V + M V + +Y++V
Sbjct: 373 IFNEMEGSGLEADERLMNSLVRGLCRKSIKENDLVEVAYEVFEKMKKRGFVIEQSTYALV 432
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A+ A+K +DA + +MV +G +PR + V AL ++ KA ++ +
Sbjct: 433 IQALWVAKKVDDAFINLHQMV-RLGYIPRLITINNVIQALCVGGKVDKAFYVLVLMYENS 491
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQ 316
Y++++ L +E L V G RG +P+ K R+
Sbjct: 492 KIPSRMSYDLLIHE-LNRQERTLGACNVYGAALVRGVVPHKKPRR 535
>gi|225434476|ref|XP_002278184.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09060
[Vitis vinifera]
Length = 691
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 1/187 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + VA +L +M G P+ CN +++ +L +A + M S C P +
Sbjct: 441 REGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV 500
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I +S A + ++A ++KEM L+ G P + L +++ A+ +
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEM-LHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 559
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
KG + + +++ G + A + M +R +P + ++EG V +
Sbjct: 560 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619
Query: 328 WKLATVV 334
++ A+ +
Sbjct: 620 FERASKI 626
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 20/232 (8%)
Query: 119 ALAILQRTLR-SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I QR GC P + L +A +E + L +++G P+ T N L
Sbjct: 97 ALDIFQRMHEIFGCQPGIRSYNSLLNALIESN-KWDEAESFFLYFETMGLSPNLQTYNIL 155
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C Q +A ++L M PD+ SY +I +++ +DA+++ E
Sbjct: 156 IKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE------ 209
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMI---EFLER--KGCPI--GFQGYEVVVEGCLEC 290
MP +G+ VA +K +++ E ER KG + Y V++ G +C
Sbjct: 210 -MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC 268
Query: 291 REYILAGKTV--MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ + + M ERG Y ++ GL G G AT V + AE
Sbjct: 269 GKFDESFEIWHRMKKNERGQDLY--TYSTLIHGLCGSGNLDGATRVYKEMAE 318
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 4/166 (2%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L E A VL M+ C P+ + VI A K DA+ MV +
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMV-SK 493
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + L +A +++ + KG Y +++ G + ++ +A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
E+GF P +K+ ++ GL G+ + A Q ++E+K
Sbjct: 554 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL---QLYSEMK 596
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 31/283 (10%)
Query: 19 LLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQ 75
L F ++ +L+T ++ + K + + ELL E +P+ FS+ +++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196
Query: 76 N----HRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSG 130
N +K+ DEM E + P +A Y+ L+ + L A I +R L+
Sbjct: 197 NGYMSDALKLFDEMPERGVT------PDVACYNILIDGFFKKGDILN-ASEIWERLLKGP 249
Query: 131 CV--PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
V +P ++++ L + + +I MK D T + L+ LC L
Sbjct: 250 SVYPNIPSYNVMING--LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 307
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG--MVI 246
A +V K M+ PD+ Y+ ++ A + + +E+ K +M ++G V+
Sbjct: 308 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK-------VMEKEGCRTVV 360
Query: 247 KVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+R N ++ +A+ + E L K C Y V+V G
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHG 403
Score = 40.8 bits (94), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+K +P+ + N +++ LC + E+ ++ M E DL +YS +I + +
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A + KEM N G+ P + + LRA R + + +E+ + +E++GC Y
Sbjct: 306 LDGATRVYKEMAEN-GVSPDVVVYNTMLNGYLRAGR-IEECLELWKVMEKEGCRT-VVSY 362
Query: 281 EVVVEGCLE-------------------CREYILAGKTVMGMTERGFI 309
+++ G E C + + G V G+ + G++
Sbjct: 363 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYL 410
>gi|357498963|ref|XP_003619770.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494785|gb|AES75988.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 582
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/194 (23%), Positives = 85/194 (43%), Gaps = 22/194 (11%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C+++ V D + +M + PD TCN L+ C + QL EA +L M
Sbjct: 217 IDNMCKAKLVNDAFDLYSQMVAKRISPDDFTCNSLIYGFCIMGQLKEAVGLLHKMILENI 276
Query: 203 VPDLESYSIVIGAMSTARKTNDA-----VEMMKEMVLNM----GLMPRQGMVIKVAAALR 253
P + ++SI++ A K +A V M K+++L++ LM +V
Sbjct: 277 NPRMYTFSILVDAFCKEGKVKEAKMMLGVTMKKDIILDVVTYNSLMDGYCLV-------- 328
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+E+ KA ++ + + +G Q Y ++ G + + A M R IP +
Sbjct: 329 --KEINKAKDIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVV 386
Query: 314 VRQKVVEGLAGVGE 327
+++GL +G+
Sbjct: 387 TYNSLIDGLGKLGK 400
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 78/176 (44%), Gaps = 16/176 (9%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P+ T N ++ +LC + +A +L + PD+ +Y+++I + +
Sbjct: 410 EMHDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPDMYTYTVLIKGLCQSG 469
Query: 221 KTNDAVEMMKEMVL---NMGLMPRQGMV--IKVAAALRANREMWKAVEMIEFLERKGCPI 275
K DA ++ +++++ N+ + M+ V A A+ ++ +E GC
Sbjct: 470 KLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDA------ALALLSKMEDNGCIP 523
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-----YIKVRQKVVEGLAGVG 326
+ YE+V+ E E +A K + M RG + Y+ ++ V G+ G
Sbjct: 524 NAKTYEIVILSLFEKDENDMAEKLLREMIARGLLDEKSYIYLASKETGVMGMGAAG 579
Score = 40.4 bits (93), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+H D + L++ LC + ++ A ++LK + P+ Y+++I M A+ NDA
Sbjct: 170 GFHLDQVSYGTLINGLCKVGRITAALQLLKRVDGKLVQPNAVMYNMIIDNMCKAKLVNDA 229
Query: 226 VEMMKEMV 233
++ +MV
Sbjct: 230 FDLYSQMV 237
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 35/175 (20%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
DI M S G + + +++ LC I + EA + + M + +P++ +Y+ +I +
Sbjct: 336 DIFDSMASRGVIANVQSYTTMINGLCKIKMVDEAVNLFEEMRCRKIIPNVVTYNSLIDGL 395
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + ++++ EM + G P + AL N + KA+ ++ L+ +G
Sbjct: 396 GKLGKISCVLKLVDEM-HDRGQPPNIITYNSILDALCKNHHVDKAIALLTNLKDQGIRPD 454
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y V+++G + + A K + +G+ + +++G G + A
Sbjct: 455 MYTYTVLIKGLCQSGKLEDAQKVFEDLLVKGYNLDVYTYTVMIQGFCVKGLFDAA 509
>gi|302821834|ref|XP_002992578.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
gi|300139647|gb|EFJ06384.1| hypothetical protein SELMODRAFT_43484 [Selaginella moellendorffii]
Length = 427
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 53/99 (53%), Gaps = 5/99 (5%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE- 201
LE C+ V+D +L MK + PD Y++ C +L EA K + M+ E
Sbjct: 149 LEILCRCGRVSDAWKLLRMMKEKHFKPDAVPHTYVLRKFCEAGRLDEALKGFEEMTGNEK 208
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C PD +YS+++ + +A++ +DA + M++MV G MP
Sbjct: 209 CEPDFVTYSVIVDGLCSAQRLDDAWKFMEKMVAK-GRMP 246
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 35/63 (55%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T N L+S LC + ++ A ++ + M EC PD +Y ++ + A + +DAV +
Sbjct: 348 PQTVTYNALISGLCRVGRVERALELFREMPQRECRPDAATYGALLDGICKAERADDAVTL 407
Query: 229 MKE 231
++E
Sbjct: 408 LRE 410
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 67/156 (42%), Gaps = 6/156 (3%)
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA-- 225
PD T + ++ L +L A KV + M + +PD+ + + + + +DA
Sbjct: 104 QPDSSTYSTMIYELSRQGRLDHATKVAQEMVDKDKIPDMPCLGVALEILCRCGRVSDAWK 163
Query: 226 -VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+ MMKE +P ++ K A R + E K E E + C F Y V+V
Sbjct: 164 LLRMMKEKHFKPDAVPHTYVLRKFCEAGRLD-EALKGFE--EMTGNEKCEPDFVTYSVIV 220
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
+G + A K + M +G +P ++ + +VE
Sbjct: 221 DGLCSAQRLDDAWKFMEKMVAKGRMPDVRTFRSLVE 256
>gi|242039913|ref|XP_002467351.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
gi|241921205|gb|EER94349.1| hypothetical protein SORBIDRAFT_01g026260 [Sorghum bicolor]
Length = 846
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 81/165 (49%), Gaps = 5/165 (3%)
Query: 78 RIKVIDEMLESFIPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ ++E ++F + R Y+ ++S ++ + + AL + Q ++G VP
Sbjct: 542 RLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAGN-MTEALKLQQNMRQNGLVPDI 600
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L L R + + V ++LL+M S G PD T N ++++ C + A +
Sbjct: 601 YTSNILIDG-LCREGKLEMVDNLLLDMCSNGLTPDTVTYNTIINAYCRAKDMNSAMNFMN 659
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
M +A C PD+ +Y+I + ++ + N A +++ E+V MG P
Sbjct: 660 KMLAAGCEPDIFTYNIWMHSLCSNHMLNQAGKVLDELVA-MGCPP 703
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M +G PD + ++ LC +D + EA + M++ VP+ +Y+ +I A+ A
Sbjct: 520 DMGKLGLQPDFIAFSAYINGLCRLDYVNEAYQAFAEMTARGIVPNNFTYNSIISALCRAG 579
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+A+++ + M N GL+P
Sbjct: 580 NMTEALKLQQNMRQN-GLVP 598
Score = 37.4 bits (85), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 1/114 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL +L R RSG P L R + + ++ EM + G P T N ++
Sbjct: 168 ALDVLTRVRRSGKTPSLSALAALLRLLF-RSGEVHAAWNVFEEMAARGPRPSLATFNAMI 226
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
C + A+ +L M VP++ SY+I+I + DA ++ +EM
Sbjct: 227 LGFCHRGLVRVASGLLGIMGEFGIVPNVCSYNILIKGHCVFGWSRDAFKLFEEM 280
>gi|449445824|ref|XP_004140672.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
gi|449487417|ref|XP_004157616.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g36240-like [Cucumis sativus]
Length = 486
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 77/177 (43%), Gaps = 9/177 (5%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+S C Q V+A ++ K M C P++ S++ +I RK D + +
Sbjct: 217 PDVYTFNILISGYCRNSQFVQALELFKEMREKGCSPNVISFNTLIKGFFRERKFEDGIAL 276
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE-MIEFLERKGCPIGFQGYEVVVEGC 287
EM+ +G + L ++++A E +++F ++ P + Y VV C
Sbjct: 277 AYEMI-ELGCKFSSVTCEILMDGLSREGKIFEACEILLDFSRKQVLPKDYDYYGVVEMLC 335
Query: 288 LECREYILAGKTVMGMTE---RGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ AGK + + E G +P +++GL G A V +R E+
Sbjct: 336 GKGN----AGKAMEVVDELWMEGNVPSFITSTTLIDGLRKEGRVNDAMNVTERMLEV 388
>gi|255661008|gb|ACU25673.1| pentatricopeptide repeat-containing protein [Xeroaloysia
ovatifolia]
Length = 369
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 76/155 (49%), Gaps = 1/155 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L +A VL GM + C P+ Y+ +I + A K+ DA+ + +EM +
Sbjct: 135 MINGLCKETKLEKAISVLNGMIKSGCKPNTHVYNALINGLIGASKSEDAIRVFREMGITH 194
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
I + ++ R +A ++++ + KG Y ++++G + +A
Sbjct: 195 CSPTIVTYNILINGLCKSER-FGEAYDLVKEMLEKGLTPSVITYSLLMKGLCLGHKIEMA 253
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +T+ GF P +++ ++ GL VG+ +LA
Sbjct: 254 LQLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQLA 288
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 46/222 (20%), Positives = 92/222 (41%), Gaps = 8/222 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCN 175
+L +L+ R G V + SA + C+ + +L M G P+ N
Sbjct: 113 SLRVLETAERKGGV----LDAFAYSAMINGLCKETKLEKAISVLNGMIKSGCKPNTHVYN 168
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L++ L + +A +V + M C P + +Y+I+I + + + +A +++KEM L
Sbjct: 169 ALINGLIGASKSEDAIRVFREMGITHCSPTIVTYNILINGLCKSERFGEAYDLVKEM-LE 227
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
GL P + L ++ A+++ + + G Q + ++ G + L
Sbjct: 228 KGLTPSVITYSLLMKGLCLGHKIEMALQLWNQVTKNGFKPDVQMHNTLIHGLCSVGKTQL 287
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
A + M P + + ++EG G+ + A V+ R
Sbjct: 288 ALSLYLDMNYWNCAPNLVTQNTLMEGFYKDGDMRNALVIWAR 329
>gi|297745840|emb|CBI15896.3| unnamed protein product [Vitis vinifera]
Length = 650
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/187 (20%), Positives = 83/187 (44%), Gaps = 1/187 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + VA +L +M G P+ CN +++ +L +A + M S C P +
Sbjct: 441 REGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMVSKGCFPTVV 500
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I +S A + ++A ++KEM L+ G P + L +++ A+ +
Sbjct: 501 TYNTLINGLSKAERFSEAYALVKEM-LHKGWKPNMITYSLLMNGLCQGKKLDMALNLWCQ 559
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
KG + + +++ G + A + M +R +P + ++EG V +
Sbjct: 560 ALEKGFKPDVKMHNIIIHGLCSSGKVEDALQLYSEMKQRKCVPNLVTHNTLMEGFYKVRD 619
Query: 328 WKLATVV 334
++ A+ +
Sbjct: 620 FERASKI 626
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 97/232 (41%), Gaps = 20/232 (8%)
Query: 119 ALAILQRTLR-SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I QR GC P + L +A +E + L +++G P+ T N L
Sbjct: 97 ALDIFQRMHEIFGCQPGIRSYNSLLNALIESN-KWDEAESFFLYFETMGLSPNLQTYNIL 155
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C Q +A ++L M PD+ SY +I +++ +DA+++ E
Sbjct: 156 IKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAKNGYMSDALKLFDE------ 209
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMI---EFLER--KGCPI--GFQGYEVVVEGCLEC 290
MP +G+ VA +K +++ E ER KG + Y V++ G +C
Sbjct: 210 -MPERGVTPDVACYNILIDGFFKKGDILNASEIWERLLKGPSVYPNIPSYNVMINGLCKC 268
Query: 291 REYILAGKTV--MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
++ + + M ERG Y ++ GL G G AT V + AE
Sbjct: 269 GKFDESFEIWHRMKKNERGQDLY--TYSTLIHGLCGSGNLDGATRVYKEMAE 318
Score = 47.8 bits (112), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/166 (23%), Positives = 71/166 (42%), Gaps = 4/166 (2%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L E A VL M+ C P+ + VI A K DA+ MV +
Sbjct: 435 MINGLCREGRLDEVAGVLDQMTKHGCKPNPHVCNAVINGFVRASKLEDALRFFGNMV-SK 493
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G P + L +A +++ + KG Y +++ G + ++ +A
Sbjct: 494 GCFPTVVTYNTLINGLSKAERFSEAYALVKEMLHKGWKPNMITYSLLMNGLCQGKKLDMA 553
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
E+GF P +K+ ++ GL G+ + A Q ++E+K
Sbjct: 554 LNLWCQALEKGFKPDVKMHNIIIHGLCSSGKVEDAL---QLYSEMK 596
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 63/283 (22%), Positives = 119/283 (42%), Gaps = 31/283 (10%)
Query: 19 LLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQ 75
L F ++ +L+T ++ + K + + ELL E +P+ FS+ +++ +
Sbjct: 137 FLYFETMGLSPNLQTYNILIKISCRKKQFDKAKELLNWMWEQGFSPDVFSYGTLINSLAK 196
Query: 76 N----HRIKVIDEMLESFIPLRPRSRPKIA-YDYLLSYTLQSLHPLPLALAILQRTLRSG 130
N +K+ DEM E + P +A Y+ L+ + L A I +R L+
Sbjct: 197 NGYMSDALKLFDEMPERGVT------PDVACYNILIDGFFKKGDILN-ASEIWERLLKGP 249
Query: 131 CV--PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188
V +P ++++ L + + +I MK D T + L+ LC L
Sbjct: 250 SVYPNIPSYNVMING--LCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGNLD 307
Query: 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG--MVI 246
A +V K M+ PD+ Y+ ++ A + + +E+ K +M ++G V+
Sbjct: 308 GATRVYKEMAENGVSPDVVVYNTMLNGYLRAGRIEECLELWK-------VMEKEGCRTVV 360
Query: 247 KVAAALRA---NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+R N ++ +A+ + E L K C Y V+V G
Sbjct: 361 SYNILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHG 403
Score = 40.8 bits (94), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 36/168 (21%), Positives = 73/168 (43%), Gaps = 23/168 (13%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
+K +P+ + N +++ LC + E+ ++ M E DL +YS +I + +
Sbjct: 246 LKGPSVYPNIPSYNVMINGLCKCGKFDESFEIWHRMKKNERGQDLYTYSTLIHGLCGSGN 305
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ A + KEM N G+ P + + LRA R + + +E+ + +E++GC Y
Sbjct: 306 LDGATRVYKEMAEN-GVSPDVVVYNTMLNGYLRAGR-IEECLELWKVMEKEGCRT-VVSY 362
Query: 281 EVVVEGCLE-------------------CREYILAGKTVMGMTERGFI 309
+++ G E C + + G V G+ + G++
Sbjct: 363 NILIRGLFENAKVDEAISIWELLPEKDCCADSMTYGVLVHGLCKNGYL 410
>gi|224092436|ref|XP_002309609.1| predicted protein [Populus trichocarpa]
gi|222855585|gb|EEE93132.1| predicted protein [Populus trichocarpa]
Length = 841
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/209 (19%), Positives = 92/209 (44%), Gaps = 2/209 (0%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L++ ++ G +P + +++ + ++A + EM IG P+ T L++ C
Sbjct: 561 LKKLVQEGFIPTCMTYNCIIDGFVKEGSVNSALA-VYTEMCKIGVSPNVFTYTNLINGFC 619
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
+ + A KV+ M + D+ Y +I +A +++ E+ +GL P +
Sbjct: 620 KSNNMDLALKVMDEMKNKGIELDVTVYCALIDGFCRKGDMVNASQLLSEL-QEVGLSPNK 678
Query: 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ + + R + M A+ + + + +G P Q Y ++ G L+ + + A +
Sbjct: 679 VVYSSMISGFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLLKEGKLLFASELYAE 738
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M +G +P + ++ GL G+ + A
Sbjct: 739 MLAKGIMPDLITYSVLIHGLCNKGQLENA 767
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 39/145 (26%), Positives = 64/145 (44%), Gaps = 3/145 (2%)
Query: 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV 155
S K+ Y ++S + L + AL + +R + G QI L S L + +
Sbjct: 675 SPNKVVYSSMIS-GFRKLQNMEAALHLHKRMINEGIPCDLQIYTTLISGLL-KEGKLLFA 732
Query: 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
+++ EM + G PD T + L+ LC QL A K+L+ M P + Y+ +I
Sbjct: 733 SELYAEMLAKGIMPDLITYSVLIHGLCNKGQLENAQKILEDMDRKCMTPTVFIYNTLITG 792
Query: 216 MSTARKTNDAVEMMKEMVLNMGLMP 240
+A + EM L+ GL+P
Sbjct: 793 HFKEGNLQEAFRLHNEM-LDKGLVP 816
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 33/176 (18%), Positives = 72/176 (40%), Gaps = 1/176 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ P TCN +++ LC + E+ LK + +P +Y+ +I
Sbjct: 529 MRGENIAPSDFTCNIIINGLCKAGRTSESQDRLKKLVQEGFIPTCMTYNCIIDGFVKEGS 588
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
N A+ + EM +G+ P + + M A+++++ ++ KG + Y
Sbjct: 589 VNSALAVYTEMC-KIGVSPNVFTYTNLINGFCKSNNMDLALKVMDEMKNKGIELDVTVYC 647
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+++G + + A + + + E G P V ++ G + + A + +R
Sbjct: 648 ALIDGFCRKGDMVNASQLLSELQEVGLSPNKVVYSSMISGFRKLQNMEAALHLHKR 703
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 59/308 (19%), Positives = 123/308 (39%), Gaps = 31/308 (10%)
Query: 24 SLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVID 83
+LRS+ S +TL ++P + S QNP+P + NFP D
Sbjct: 13 TLRSIKSPKTLSSQ----------PELPNIPISETPLSQNPHPNT---NFPGKSAPTSQD 59
Query: 84 EMLES--FIP--LRPRSRPKIAYDYLLSYT-----LQSLHPLPLALAILQRTLRSGCVPV 134
L +I L ++ P+ A Y + ++S+ L + L IL ++ +
Sbjct: 60 SFLTQTQYIDTLLNHQNDPQSALSYFTWASQKRGLIKSVDALCVLLHILTKSTETCGKAR 119
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+ S W S VA ++ + + + D NYL++S ++ +A
Sbjct: 120 NLLNRFASDDW--GPVPSVVVARLIESSRRLDFESDSRVFNYLLNSYVKTKRINDAVDCF 177
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ + VP L +I + + N+ + +++ M +G ++ +RA
Sbjct: 178 NSLIEKDIVPCLTVMNIFLSELVK----NNMIREARDVYNKMASKGVKGDCATISVMIRA 233
Query: 255 NREMWKAVEMIEFL---ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
+ K E + + KG + + Y +V+E + + + A + M ++G++P+
Sbjct: 234 SMREGKLEEAEGWFREAKNKGVELDARAYSIVIEAVCKKPDSVAALGLLREMRDKGWVPH 293
Query: 312 IKVRQKVV 319
+ +V+
Sbjct: 294 EVIFTRVI 301
>gi|255556314|ref|XP_002519191.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
gi|223541506|gb|EEF43055.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis]
Length = 719
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 80/171 (46%), Gaps = 6/171 (3%)
Query: 143 SAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S+ ++ C+++ + D L EM G P+ T N L+ SLC I + + K+L+ M +
Sbjct: 536 SSIIDGLCRAKQIEDALGCFSEMVMWGLSPNAVTYNILIHSLCIIGDVPRSMKLLRKMQT 595
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
PD+ S++ +I + K DA ++ M L++GL+P + +
Sbjct: 596 DGINPDVFSFNALIQSFCRMGKVEDAKKLFSSM-LSLGLIPDNYTYVAFIKVFCQSGRFN 654
Query: 260 KAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309
+A E+ +E GC P F ++++ ++ ++ A K +E G +
Sbjct: 655 EAKELFLSMEANGCMPDSFTC-NIILDALVKQDQFEAAQKIAKTCSEWGIL 704
Score = 40.8 bits (94), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 37/177 (20%), Positives = 68/177 (38%), Gaps = 1/177 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L + ++ +L + IG+ PD T N ++ L L E +L
Sbjct: 367 LSSKNMAREAGALLKKFGKIGHKPDSATFNIAMNCLIKGFDLNEVCNILDRFVEQGMKFG 426
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I A+ A K + +MV + GL+ V M KA
Sbjct: 427 FSTYLALIKALYMAGKVTEGNHYFNQMVKD-GLLCNVCSYNMVIDCFCKTSMMDKATNTF 485
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ ++ KG P + +++G + E + ++ + E GF P I +++GL
Sbjct: 486 KEMQYKGIPPNLVTFNTLIDGYCKGGEICKSRDLLVMLLEHGFKPDIFTFSSIIDGL 542
>gi|222612845|gb|EEE50977.1| hypothetical protein OsJ_31558 [Oryza sativa Japonica Group]
Length = 1263
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 99/246 (40%), Gaps = 7/246 (2%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
S+RT + A +D + + LL E PN +S+ + K DE
Sbjct: 319 SVRTYSVLMVAFGKRRDVETVLWLLREMEAHGVKPNVYSYTICIRVLGQAKRFDEAYRIL 378
Query: 90 IPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWL 146
+ +P + +L L + A + + +S P V I LL
Sbjct: 379 AKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKSDQKPDRVTYITLLDK---F 435
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
SQSV +I MK+ GY+ + ++ +LC + ++ EA ++ M VP+
Sbjct: 436 GDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQ 495
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+ +I A + DA+E+ K M ++ G P + + E KA++ E
Sbjct: 496 YSYNSLISGFLKADRFGDALELFKHMDIH-GPKPNGYTHVLFINYYGKSGESIKAIQRYE 554
Query: 267 FLERKG 272
++ KG
Sbjct: 555 LMKSKG 560
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R + + V +L EM Y P+ T N ++ LC + +A +L M++ C+
Sbjct: 678 AGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCI 737
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEM 232
PDL SY+ VI + + N+A + +M
Sbjct: 738 PDLSSYNTVIYGLVKEERYNEAFSIFCQM 766
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 73/167 (43%), Gaps = 5/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ E+K++G PD T ++ + EA K+ M CVPD+ + + +I +
Sbjct: 587 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 646
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + ++A + ++ M L P G + A L ++ + + ++E + P
Sbjct: 647 KAGRGDEAWRIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL 705
Query: 278 QGYEVVVEGCLECREYILAGKTVM--GMTERGFIPYIKVRQKVVEGL 322
Y +++ CL C+ + M MT +G IP + V+ GL
Sbjct: 706 ITYNTILD-CL-CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 750
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 44/227 (19%), Positives = 94/227 (41%), Gaps = 3/227 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y+ ++S ++S L A+ + + G P P L L + + + ++
Sbjct: 951 VTYNTIISGLVKSRR-LEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL-KAGRIEDAENLF 1008
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM G +C N L++ + + + M PD++SY+I+I + A
Sbjct: 1009 NEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKA 1068
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ ND + +++ L MGL P + L ++ + +AV + +++KG
Sbjct: 1069 GQLNDGLTYFRQL-LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYT 1127
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++ + + AGK + +G+ P + ++ G + G
Sbjct: 1128 YNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSG 1174
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 68/153 (44%), Gaps = 15/153 (9%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++ V + +M G +PD + ++ +LC QL + + + PDL +Y+
Sbjct: 1035 NTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKAGQLNDGLTYFRQLLEMGLEPDLITYN 1094
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIE 266
++I + +++ +AV + EM G++P +++ + A +A +A +M E
Sbjct: 1095 LLIDGLGKSKRLEEAVSLFNEM-QKKGIVPNLYTYNSLILHLGKAGKAA----EAGKMYE 1149
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
L KG Y ++ G Y ++G T
Sbjct: 1150 ELLTKGWKPNVFTYNALIRG------YSVSGST 1176
Score = 42.7 bits (99), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 85/192 (44%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + + G VP + +L A+ +RR ++V +L EM++ G P+ + +
Sbjct: 304 ALEVYRVMMVDGVVPSVRTYSVLMVAFGKRR-DVETVLWLLREMEAHGVKPNVYSYTICI 362
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L + EA ++L M + C PD+ +++++I + A + +DA ++ +M +
Sbjct: 363 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMKKS-DQ 421
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + N + +E+ ++ G Y V++ + A +
Sbjct: 422 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 481
Query: 299 TVMGMTERGFIP 310
M ++G +P
Sbjct: 482 MFDEMKQKGIVP 493
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ I + + CVP V + L+ + L + + I ++K + P GT N L
Sbjct: 619 AVKIFYDMIENNCVPDVLAVNSLIDT--LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 676
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L ++ E +L+ M + P+L +Y+ ++ + NDA++M+ M
Sbjct: 677 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 732
>gi|38344321|emb|CAE02149.2| OSJNBa0058K23.3 [Oryza sativa Japonica Group]
gi|38345611|emb|CAD41894.2| OSJNBa0093O08.13 [Oryza sativa Japonica Group]
Length = 368
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 81/190 (42%), Gaps = 1/190 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + V ++ L +G D N LV LC + +A +L M CVP++ +YS
Sbjct: 157 QYEVVHEVYLSASRLGVTLDTCCFNILVKGLCQFGKFGDAISLLYEMPKQGCVPNVTTYS 216
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++ + + + A E+ + M + I +A R R + +A + + +
Sbjct: 217 TLMNFLCQHGQVDKAFELCERMQKEDIVADAVVYNILIAGLCREQR-VTEAFNLFKSMVP 275
Query: 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330
KGC Y+V+++G L +++ A V M P + +++GL V
Sbjct: 276 KGCYPNSGTYQVLLDGLLSSGKFVEAKGLVSMMRAERMRPGFSSFKLLIDGLCSVNCLDD 335
Query: 331 ATVVRQRFAE 340
A +V ++ E
Sbjct: 336 AHLVLKQMVE 345
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ D +L EM G P+ T + L++ LC Q+ +A ++ + M + V D
Sbjct: 188 CQFGKFGDAISLLYEMPKQGCVPNVTTYSTLMNFLCQHGQVDKAFELCERMQKEDIVADA 247
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
Y+I+I + ++ +A + K MV G P G + L ++ + +A ++
Sbjct: 248 VVYNILIAGLCREQRVTEAFNLFKSMVPK-GCYPNSGTYQVLLDGLLSSGKFVEAKGLVS 306
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+ + GF ++++++G A + M E+GF+P
Sbjct: 307 MMRAERMRPGFSSFKLLIDGLCSVNCLDDAHLVLKQMVEQGFVP 350
>gi|12324355|gb|AAG52147.1|AC022355_8 hypothetical protein; 57683-56685 [Arabidopsis thaliana]
Length = 332
Score = 50.8 bits (120), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 38/197 (19%), Positives = 81/197 (41%), Gaps = 4/197 (2%)
Query: 138 RLLLSSAWLERRCQSQS---VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ +A ++R C+ ++ EM G PD T + ++ S C + +A ++L
Sbjct: 75 HVVIYNAIIDRLCKDGHHIHAQNLFTEMHDKGIFPDVITYSGMIDSFCRSGRWTDAEQLL 134
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M + PD+ ++S +I A+ K ++A E+ +M L G+ P +
Sbjct: 135 RDMIERQINPDVVTFSALINALVKEGKVSEAEEIYGDM-LRRGIFPTTITYNSMIDGFCK 193
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ A M++ + K C + ++ G + + + M RG +
Sbjct: 194 QDRLNDAKRMLDSMASKSCSPDVVTFSTLINGYCKAKRVDNGMEIFCEMHRRGIVANTVT 253
Query: 315 RQKVVEGLAGVGEWKLA 331
++ G VG+ A
Sbjct: 254 YTTLIHGFCQVGDLDAA 270
>gi|449525305|ref|XP_004169658.1| PREDICTED: pentatricopeptide repeat-containing protein
At3g29290-like [Cucumis sativus]
Length = 600
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 79/192 (41%), Gaps = 2/192 (1%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R+ + +S ++L M+ G P N L++ L + + ++ + M E +
Sbjct: 159 LSRKNKVRSALELLRSMQLAGLLPSLHALNSLLACLLRNELFADGLRIFEFMKLNE-LST 217
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEM 264
+YS+V+ A++ A A+EM K L +V ++ W +A
Sbjct: 218 GHTYSLVLKAVANAHGFLSALEMFKAWEHQCVLAQFDAIVYNTMISICGKDNNWVEAERT 277
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
+E+ GC Y ++V + C + LA T + M + F P Q ++ +
Sbjct: 278 WRLMEKNGCGATRITYSLLVSTFVRCNQNELAIDTYVKMVQNSFKPGNDTMQAIIGASSK 337
Query: 325 VGEWKLATVVRQ 336
G+W A V Q
Sbjct: 338 EGKWDFALRVFQ 349
Score = 40.8 bits (94), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 32/157 (20%), Positives = 71/157 (45%), Gaps = 9/157 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M G P+ + N L+++L ++ A V M S PD+ +++ ++GA+
Sbjct: 347 VFQDMLKCGLQPNSVSFNALINALGKAKEVTLAFSVYNVMKSMGHSPDVYTWNALLGALY 406
Query: 218 TARKTNDAV---EMMKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLERKGC 273
A + +DA+ E +K + + + +++ + +W +AV+++ +E G
Sbjct: 407 KANRYSDAIHLFEFVKREKVQLNIHIYNTILMSCSKL-----GLWERAVQILWEMEVSGL 461
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
I Y +V+ C R+ +A + M + P
Sbjct: 462 SISTSSYNIVMTACEMARKPEIALQVYERMVHQKLTP 498
>gi|125548610|gb|EAY94432.1| hypothetical protein OsI_16202 [Oryza sativa Indica Group]
gi|125590647|gb|EAZ30997.1| hypothetical protein OsJ_15079 [Oryza sativa Japonica Group]
Length = 485
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 65/134 (48%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+S + I++EM+S G PD T L+ C ++L A ++ + M + D +Y+ +
Sbjct: 273 KSASGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNMVAEGVGLDEVTYTAL 332
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I +S A ++ DA ++ EM + GL P V A ++ + +++ ++ KG
Sbjct: 333 ISGLSKAGRSADAERVLGEM-MEAGLEPDNTTYTMVIDAFCRKGDVKTGLRLLKEMQNKG 391
Query: 273 CPIGFQGYEVVVEG 286
G Y V++ G
Sbjct: 392 RKPGVVTYNVIMNG 405
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 47/222 (21%), Positives = 87/222 (39%), Gaps = 2/222 (0%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
P A A + L +G P ++ +L L R + S ++ EM+S G + N
Sbjct: 98 PEACAFYLQLLDAGLPPEAKLFNVLMRD-LVRLGELASAQNVFDEMQSRGVRRTVVSFNT 156
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++S +C L A + + MS A PD+ +Y +I + + DA + ++M
Sbjct: 157 MISGMCRAGDLDGAETLHRRMSEAGVTPDVYTYGALIQGLCRVGRIEDARGVFEKMC-GR 215
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+ P + + A + +E+ + +G Y +V G R+ A
Sbjct: 216 GMKPNAVVFTILIDAHCKKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSA 275
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338
V+ M G P +++G E +A ++Q
Sbjct: 276 SGIVVEMRSAGLRPDTVTYTTLIDGYCKEEELDMAMEIKQNM 317
Score = 41.2 bits (95), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 45/86 (52%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ ++++ ++ EM+ G PD T N +V+ LC L A+ ++ M SA PD
Sbjct: 233 KKGDAETMLELHREMRERGVRPDAVTYNAIVNGLCRARDLKSASGIVVEMRSAGLRPDTV 292
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMV 233
+Y+ +I + + A+E+ + MV
Sbjct: 293 TYTTLIDGYCKEEELDMAMEIKQNMV 318
>gi|356561685|ref|XP_003549110.1| PREDICTED: pentatricopeptide repeat-containing protein At1g12775,
mitochondrial-like [Glycine max]
Length = 477
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/211 (20%), Positives = 92/211 (43%), Gaps = 7/211 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A+A L R L V P + ++ + + C+++ V D + EM G P+ T N
Sbjct: 216 AVARLLRKLEGHSVK-PDV--VMYTTIIHCLCKNKRVGDACDLYSEMIVKGISPNVFTYN 272
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + L EA +L M PD+ +++I+I A+ K ++A+ + +EM +
Sbjct: 273 TLIYGFCIMGNLKEAFSLLNEMKLKNINPDVYTFNILIDALGKEGKIDEAISLFEEMK-H 331
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
+ P + L N + +A+ + + ++ +G Y ++++ +
Sbjct: 332 KNMFPNIVTYTSLIDGLCKNHHLERAIALCKKMKEQGIQPDVYSYTILLDALCKGGRLEN 391
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
A + + +G+ ++ ++ GL G
Sbjct: 392 AKQFFQHLLVKGYHLNVRTYNVMINGLCKAG 422
Score = 39.7 bits (91), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 76/175 (43%), Gaps = 8/175 (4%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSR-PKIAYDYLLSYTLQSLHPLPLALA 121
NP+ ++F + IDE + F ++ ++ P I L L H L A+A
Sbjct: 300 NPDVYTFNILIDALGKEGKIDEAISLFEEMKHKNMFPNIVTYTSLIDGLCKNHHLERAIA 359
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQS--QSVADILLEMKSIGYHPDCGTCNYLV 178
+ ++ G P V +LL + R ++ Q +L++ GYH + T N ++
Sbjct: 360 LCKKMKEQGIQPDVYSYTILLDALCKGGRLENAKQFFQHLLVK----GYHLNVRTYNVMI 415
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+ LC + + M C+PD ++ +I A+ + + A + ++EM+
Sbjct: 416 NGLCKAGLFGDVMDLKSKMEGKGCMPDAITFKTIICALFEKDENDKAEKFLREMI 470
>gi|115482066|ref|NP_001064626.1| Os10g0421800 [Oryza sativa Japonica Group]
gi|113639235|dbj|BAF26540.1| Os10g0421800, partial [Oryza sativa Japonica Group]
Length = 973
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
SQSV +I MK+ GY+ + ++ +LC + ++ EA ++ M VP+ SY+
Sbjct: 350 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 409
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I A + DA+E+ K M ++ G P + + E KA++ E ++
Sbjct: 410 SLISGFLKADRFGDALELFKHMDIH-GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 468
Query: 271 KG 272
KG
Sbjct: 469 KG 470
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R + + V +L EM Y P+ T N ++ LC + +A +L M++ C+
Sbjct: 588 AGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCI 647
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEM 232
PDL SY+ VI + + N+A + +M
Sbjct: 648 PDLSSYNTVIYGLVKEERYNEAFSIFCQM 676
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 5/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ E+K++G PD T ++ + EA K+ M CVPD+ + + +I +
Sbjct: 497 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 556
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + ++A + ++ M L P G + A L ++ + + ++E + P
Sbjct: 557 KAGRGDEAWRIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL 615
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++ CL C+ + A + MT +G IP + V+ GL
Sbjct: 616 ITYNTILD-CL-CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 660
Score = 43.1 bits (100), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + + G VP + +L A+ +RR ++V +L EM++ G P+ + +
Sbjct: 214 ALEVYRVMMVDGVVPSVRTYSVLMVAFGKRR-DVETVLWLLREMEAHGVKPNVYSYTICI 272
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L + EA ++L M + C PD+ +++++I + A + +DA ++ +M
Sbjct: 273 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK-KSDQ 331
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + N + +E+ ++ G Y V++ + A +
Sbjct: 332 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 391
Query: 299 TVMGMTERGFIP 310
M ++G +P
Sbjct: 392 MFDEMKQKGIVP 403
Score = 40.0 bits (92), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 54/116 (46%), Gaps = 3/116 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ I + + CVP V + L+ + L + + I ++K + P GT N L
Sbjct: 529 AVKIFYDMIENNCVPDVLAVNSLIDT--LYKAGRGDEAWRIFYQLKEMNLEPTDGTYNTL 586
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L ++ E +L+ M + P+L +Y+ ++ + NDA++M+ M
Sbjct: 587 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 642
>gi|297823811|ref|XP_002879788.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297325627|gb|EFH56047.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 867
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/185 (20%), Positives = 78/185 (42%), Gaps = 1/185 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ + S + EM G P+ T L++ C +++ A +++ M S + D+
Sbjct: 602 KEGDTDSAVEAYREMSENGISPNVVTFTSLINGFCKSNRMDLALEMIHEMKSKDLKLDVP 661
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y +I A + E+ L +GLMP + + + R +M A+++ +
Sbjct: 662 AYGALIDGFCKKNDMKTAYTLFSEL-LELGLMPNVSVYNNLISGFRNLGKMDAAIDLYKK 720
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ G Y +++G L+ ILA + G +P + +V GL+ G+
Sbjct: 721 MVNDGISCDLFTYTTMIDGLLKDGNLILASDLYSELLALGIVPDEILYVVLVNGLSKKGQ 780
Query: 328 WKLAT 332
+ A+
Sbjct: 781 FVRAS 785
>gi|147846788|emb|CAN80625.1| hypothetical protein VITISV_032617 [Vitis vinifera]
Length = 733
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/250 (20%), Positives = 105/250 (42%), Gaps = 6/250 (2%)
Query: 64 PNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLAL 120
PN ++ + + HR++ E++ +P + S KI+Y ++ + + L L
Sbjct: 237 PNVITYNCLIKGYCDLHRLEDAXELIAE-MPFKGCSPDKISYYTVMGFLCKEKRIKELRL 295
Query: 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++++ L+ + Q+ L + + L E + + D + +V S
Sbjct: 296 -LMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDKVGYSAIVHS 354
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
C ++ +A +++ M S C+PD+ +Y+ VI + RK + A +M+++M + G P
Sbjct: 355 FCREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGLCQERKVDQAKKMLRQMYKH-GCKP 413
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ L N +A EM+ E Y V++ G + A V
Sbjct: 414 NTVSYTALLNGLCKNGNSLEAREMMNMSEEXWWIPNAITYSVLMHGFRREGKSSEACDLV 473
Query: 301 MGMTERGFIP 310
M ++GF P
Sbjct: 474 REMIKKGFFP 483
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 4/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
L M+ + P+ T N L+ C + +L +A +++ M C PD SY V+G +
Sbjct: 226 FLERMQIVEIXPNVITYNCLIKGYCDLHRLEDAXELIAEMPFKGCSPDKISYYTVMGFLC 285
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
++ + +M++M+ + L+P Q L + +A+E + E + +
Sbjct: 286 KEKRIKELRLLMEKMLKDSNLLPDQVTYNTFVHMLSKHGHGDEALEFLREAEERRFRVDK 345
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
GY +V CRE + A + V M +G IP + V+ GL
Sbjct: 346 VGYSAIVHSF--CREGRMDKAKEIVNEMFSKGCIPDVVTYTSVINGL 390
>gi|302806388|ref|XP_002984944.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
gi|300147530|gb|EFJ14194.1| hypothetical protein SELMODRAFT_121294 [Selaginella moellendorffii]
Length = 468
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 98/237 (41%), Gaps = 12/237 (5%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---D 157
AYD+++ +L L AL + + CVP L+ + + RC + D
Sbjct: 12 AYDFVVQ-SLAKAGMLAQALEVFETMKSESCVP----SLVTYNVLINSRCNAGEFGKALD 66
Query: 158 ILLEMK-SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ MK PD T N L+S LC+ A K+L M ++ +YS +I ++
Sbjct: 67 LFQSMKREKRVEPDRWTYNTLISGLCSSGNTEGARKLLSEMRDKNIAANVFTYSSIIKSL 126
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K ++ ++++EM + G P V + M KA E+ + + G
Sbjct: 127 VKEAKPEESYKVLEEM-MAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPD 185
Query: 277 FQGYEVVVEGCLECREYILAGKTV--MGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++ G + + + K + M M G++P + ++ GL GE + A
Sbjct: 186 NVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKA 242
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/209 (20%), Positives = 94/209 (44%), Gaps = 14/209 (6%)
Query: 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRP 94
V+ A + Y+ + E++ + C NP+ F+F + F +++ ++ E+ + +
Sbjct: 127 VKEAKPEESYKVLEEMMAA---GC-NPDVFAFNGVMQGFARSNNMEKAREVYQHMV--ES 180
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS-- 152
+P ++L + L + L +L IL VP + + S + C++
Sbjct: 181 GYKPDNVSYHILIHGLAKIGKLDESLKILSEMAMRAAGYVPNV--ITFSTLIHGLCRTGE 238
Query: 153 -QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
+ ++ M G P+ T L++ LC +++++A ++ + M+ A PD +Y+
Sbjct: 239 LEKALEVFGSMLEAGCKPNKYTYTTLIAGLCRAEKVIQARELFEKMTQACIPPDAVAYNS 298
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+I ++A ++ +EM GL P
Sbjct: 299 LIAGYCKRGSMDEAEKLYREMSGGAGLQP 327
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 67/149 (44%), Gaps = 1/149 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM + G +PD N ++ + + +A +V + M + PD SY I+I ++
Sbjct: 138 VLEEMMAAGCNPDVFAFNGVMQGFARSNNMEKAREVYQHMVESGYKPDNVSYHILIHGLA 197
Query: 218 TARKTNDAVEMMKEMVLNM-GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +++++++ EM + G +P + L E+ KA+E+ + GC
Sbjct: 198 KIGKLDESLKILSEMAMRAAGYVPNVITFSTLIHGLCRTGELEKALEVFGSMLEAGCKPN 257
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTE 305
Y ++ G + I A + MT+
Sbjct: 258 KYTYTTLIAGLCRAEKVIQARELFEKMTQ 286
>gi|125539402|gb|EAY85797.1| hypothetical protein OsI_07159 [Oryza sativa Indica Group]
Length = 506
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 40/203 (19%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ C + Q+ +A + M EC P+ +Y+ +I + A +
Sbjct: 264 PDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGV 323
Query: 229 MKEMVLN------------MGLMPRQGMVIKVAAALRANREMWK---------------- 260
+EM+ + +G + R G V + +EMW+
Sbjct: 324 FEEMIRSGVQPDAVSYTSLVGCLCRHG---NVDEGINLVQEMWQKGCKADVVTYNLLLEG 380
Query: 261 ---------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
AV ++E L +G + Y +V+ C E A + M RGF+P+
Sbjct: 381 LCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPH 440
Query: 312 IKVRQKVVEGLAGVGEWKLATVV 334
++ GL VG ATV
Sbjct: 441 YAASNMLLIGLCDVGRVSDATVT 463
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ + ++ + EM G PD + LV LC + E +++ M C D+
Sbjct: 313 KKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVV 372
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRANREMWKA 261
+Y++++ + R+ +AV ++++ +P +G+ + VA+ L + EM KA
Sbjct: 373 TYNLLLEGLCKDRRIAEAVTLLEK-------LPSEGVQLNVASYRIVMNCLCSCGEMEKA 425
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
++ + +G + +++ G + A T+ G+ + GF+P + +++E
Sbjct: 426 AGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWARLIES 485
Query: 322 L 322
+
Sbjct: 486 V 486
Score = 38.9 bits (89), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 146 LERRCQSQSVADILLEMKS------IGYHPDCGTC--NYLVSSLCAIDQLVEAAKV---L 194
L+R S+ D+L E+ + Y P TC N L+ L A +V +
Sbjct: 159 LDRLVSSRRCPDVLTELLADLRDPRSKYLPQPNTCIYNILIKYYVKKGDLGTAFQVFDEM 218
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M+ A+ P L +YS +IG + + +A E+ ++M+ ++P Q +
Sbjct: 219 RNMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCR 278
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ KA + F+ + C Y ++ G
Sbjct: 279 LGQVEKAQSIFGFMRKNECEPNAFNYATLING 310
>gi|357436523|ref|XP_003588537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355477585|gb|AES58788.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 653
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/163 (25%), Positives = 79/163 (48%), Gaps = 2/163 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTA 219
+MK G+ P GT + L+ + + EA K+L M + PDL++Y+++I A+ +
Sbjct: 169 KMKESGFRPSTGTYSNLIKGYGIVGKSGEAMKLLDLMLTDGNSKPDLQTYNMLIKALCQS 228
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
++A ++ +M + G++P +A N E +A MI ++RKG +
Sbjct: 229 GNMSEAWNIVCKMPAS-GMLPDSVTFNTMAIGYVLNSETAEAEAMILEMQRKGLEPNERT 287
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ V+V G + + A + V + + GF P + V ++ G
Sbjct: 288 FTVIVNGYYKEGQIKEALQFVYRIKDLGFKPNLLVFNVLINGF 330
>gi|242095042|ref|XP_002438011.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
gi|241916234|gb|EER89378.1| hypothetical protein SORBIDRAFT_10g006490 [Sorghum bicolor]
Length = 1443
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/199 (24%), Positives = 80/199 (40%), Gaps = 37/199 (18%)
Query: 150 CQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
C + VA D+L E++ G PD T N L+S+ L +A V + M ++EC PDL +
Sbjct: 271 CLAAGVALDLLFEVRQSGLRPDVITYNTLISACSQSSNLEDAVTVFEEMIASECRPDLWT 330
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIK-------- 247
Y+ ++ K +A + E+V G MP ++G V K
Sbjct: 331 YNAMVSVHGRCGKAEEAERLFGELV-EKGFMPDAVTYNSLLYAFAKEGNVDKVEHTCEEL 389
Query: 248 VAAALRANREMWK--------------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
V A + N + AV + + + GC Y V+++ + +
Sbjct: 390 VKAGFKKNEITYNTMIHMYGKMGRLDLAVGLYDEMRAVGCTPDAVTYTVMIDSLGKMDKI 449
Query: 294 ILAGKTVMGMTERGFIPYI 312
AGK + M + G P +
Sbjct: 450 AEAGKVLEDMADAGLKPTL 468
Score = 45.8 bits (107), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+++G PD T ++ SL +D++ EA KVL+ M+ A P L ++S +I A +
Sbjct: 423 EMRAVGCTPDAVTYTVMIDSLGKMDKIAEAGKVLEDMADAGLKPTLVAFSALICAYAKGG 482
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+ DA + M+ + G+ P
Sbjct: 483 RRADAEKTFDCMIAS-GVKP 501
>gi|15242446|ref|NP_198787.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75170916|sp|Q9FIX3.1|PP407_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At5g39710; AltName: Full=Protein EMBRYO DEFECTIVE 2745
gi|10177971|dbj|BAB11377.1| unnamed protein product [Arabidopsis thaliana]
gi|332007083|gb|AED94466.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 747
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P T N L++ C ++ +A VL+ M PD+ SYS V+
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A+ + +EMV G+ P + R +A ++ E + R G P
Sbjct: 462 RSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ C+E + A + M E+G +P + ++ GL
Sbjct: 521 FTYTALINAYCME-GDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Score = 42.0 bits (97), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T L+ S+C + A + L M P+ +Y+ ++ S
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGF 277
N+A +++EM N G P V+ A + + +M A+ ++E ++ KG
Sbjct: 395 YMNEAYRVLREMNDN-GFSPS---VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y V+ G CR Y + A + M E+G P +++G
Sbjct: 451 VSYSTVLSGF--CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Score = 38.1 bits (87), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
I V+++M E + S ++Y +LS +S + + AL + + + G P
Sbjct: 435 IAVLEDMKE-----KGLSPDVVSYSTVLSGFCRS-YDVDEALRVKREMVEKGIKPDTITY 488
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L + E+R +++ D+ EM +G PD T L+++ C L +A ++ M
Sbjct: 489 SSLIQGFCEQR-RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+PD+ +YS++I ++ +T +A ++
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
>gi|422293946|gb|EKU21246.1| hypothetical protein NGA_2092600 [Nannochloropsis gaditana CCMP526]
Length = 659
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 73/342 (21%), Positives = 135/342 (39%), Gaps = 21/342 (6%)
Query: 5 AIKSCRSLVNFRPCL-----LQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEE 59
AIK+C +R L +Q LR L + + A A Y EL E+
Sbjct: 232 AIKACGQARRWREALGVLREMQARGLRP--DLVSFNTAMDALGKAGQYDLALELFTEIED 289
Query: 60 ACQNPNPFSFLSNFPQNHRIKVIDEMLE-----SFIPLRPRSRPKIAYDYLLSYTLQSLH 114
PN S+ + R ++D E + +RP S ++Y+ +++ +
Sbjct: 290 HGFAPNLVSYNTAIHACGRAGMVDRAHELLREMQGLSVRPDS---VSYNTVMA-AFAKKN 345
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
AL +L + V I + + + + ++L E G PD +
Sbjct: 346 QWKAALELLAEMKEAPGVDPDLISYNTAMHVCAKAGRWERATELLTEALGQGLQPDVVSY 405
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N ++ + + ++A + M PD S++ + A + A K A+++++EM
Sbjct: 406 NTVMHACGRAGEYLQALDLFGMMEEVGVAPDRVSFNTAMHACNRALKWQAALQILREMEA 465
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
+ I V A RA E +A+E++E +E +G P Y ++ C CR
Sbjct: 466 RSIAPNVKSYTIAVDACGRAG-EWERALELMEEMEVRGVPANVHTYTAAMDAC--CRGGA 522
Query: 295 LAGKTVM--GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ V+ M +G P + ++ + VG+W A+ V
Sbjct: 523 VDRVLVLLEEMDGKGVEPNVVSYTIAMDAMNRVGKWDRASAV 564
>gi|297599210|ref|NP_001046823.2| Os02g0468500 [Oryza sativa Japonica Group]
gi|47497324|dbj|BAD19365.1| fertility restorer homologue A-like [Oryza sativa Japonica Group]
gi|125582052|gb|EAZ22983.1| hypothetical protein OsJ_06677 [Oryza sativa Japonica Group]
gi|255670892|dbj|BAF08737.2| Os02g0468500 [Oryza sativa Japonica Group]
Length = 506
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 40/203 (19%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L+ C + Q+ +A + M EC P+ +Y+ +I + A +
Sbjct: 264 PDQLTYNLLIGGFCRLGQVEKAQSIFGFMRKNECEPNAFNYATLINGHCKKGEVEAARGV 323
Query: 229 MKEMVLN------------MGLMPRQGMVIKVAAALRANREMWK---------------- 260
+EM+ + +G + R G V + +EMW+
Sbjct: 324 FEEMIRSGVQPDAVSYTSLVGCLCRHG---NVDEGINLVQEMWQKGCKADVVTYNLLLEG 380
Query: 261 ---------AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
AV ++E L +G + Y +V+ C E A + M RGF+P+
Sbjct: 381 LCKDRRIAEAVTLLEKLPSEGVQLNVASYRIVMNCLCSCGEMEKAAGLLGMMLGRGFVPH 440
Query: 312 IKVRQKVVEGLAGVGEWKLATVV 334
++ GL VG ATV
Sbjct: 441 YAASNMLLIGLCDVGRVSDATVT 463
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 35/181 (19%), Positives = 83/181 (45%), Gaps = 13/181 (7%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ + ++ + EM G PD + LV LC + E +++ M C D+
Sbjct: 313 KKGEVEAARGVFEEMIRSGVQPDAVSYTSLVGCLCRHGNVDEGINLVQEMWQKGCKADVV 372
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRANREMWKA 261
+Y++++ + R+ +AV ++++ +P +G+ + VA+ L + EM KA
Sbjct: 373 TYNLLLEGLCKDRRIAEAVTLLEK-------LPSEGVQLNVASYRIVMNCLCSCGEMEKA 425
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321
++ + +G + +++ G + A T+ G+ + GF+P + +++E
Sbjct: 426 AGLLGMMLGRGFVPHYAASNMLLIGLCDVGRVSDATVTLYGLVDTGFMPEARCWARLIES 485
Query: 322 L 322
+
Sbjct: 486 V 486
Score = 38.9 bits (89), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 34/152 (22%), Positives = 64/152 (42%), Gaps = 11/152 (7%)
Query: 146 LERRCQSQSVADILLEMKS------IGYHPDCGTC--NYLVSSLCAIDQLVEAAKV---L 194
L+R S+ D+L E+ + Y P TC N L+ L A +V +
Sbjct: 159 LDRLVSSRRCPDVLTELLADLRDPRSKYLPQPNTCIYNILIKHYVKKGDLGTAFQVFDEM 218
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
+ M+ A+ P L +YS +IG + + +A E+ ++M+ ++P Q +
Sbjct: 219 RKMNCADVRPSLVTYSTLIGGLCRGAQMKEAFELFEDMIEKDRIVPDQLTYNLLIGGFCR 278
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
++ KA + F+ + C Y ++ G
Sbjct: 279 LGQVEKAQSIFGFMRKNECEPNAFNYATLING 310
>gi|357166784|ref|XP_003580849.1| PREDICTED: pentatricopeptide repeat-containing protein At5g04810,
chloroplastic-like [Brachypodium distachyon]
Length = 904
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/236 (20%), Positives = 97/236 (41%), Gaps = 4/236 (1%)
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y L+S + LH A +I + L+SG P I LL A+ + +++ IL +
Sbjct: 482 YSMLISGFIH-LHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFCKMGNMDRAIR-ILEK 539
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ P ++ + A +L M + C P + +Y+ +I + +
Sbjct: 540 MQKERMQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTVMTYNALIHGLIKKNQ 599
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
AV ++ +M + G+ P + + AN ++ KA E ++ G + YE
Sbjct: 600 VERAVSVLNKMSI-AGITPNEHTYTIIMRGYAANGDIGKAFEYFTKIKEGGLKLDVYIYE 658
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE-WKLATVVRQ 336
++ C + A M+ + V +++G A G+ W+ A +++Q
Sbjct: 659 TLLRACCKSGRMQSALAVTREMSTQKIARNTFVYNILIDGWARRGDVWEAADLMKQ 714
Score = 48.1 bits (113), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/206 (20%), Positives = 83/206 (40%), Gaps = 4/206 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL IL RSGC P L L ++ Q + +L +M G P+ T ++
Sbjct: 568 ALNILDLMRRSGCAPTVMTYNALIHG-LIKKNQVERAVSVLNKMSIAGITPNEHTYTIIM 626
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
A + +A + + D+ Y ++ A + + A+ + +EM
Sbjct: 627 RGYAANGDIGKAFEYFTKIKEGGLKLDVYIYETLLRACCKSGRMQSALAVTREMSTQK-- 684
Query: 239 MPRQGMVIKVAAALRANR-EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
+ R V + A R ++W+A ++++ ++ G P Y + C + + A
Sbjct: 685 IARNTFVYNILIDGWARRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQ 744
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLA 323
K + M + G P +K +++G A
Sbjct: 745 KVIEEMADVGLKPNLKTYTTLIKGWA 770
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 28/104 (26%), Positives = 51/104 (49%), Gaps = 2/104 (1%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
+L W RR AD++ +MK G P+ T +++ C + A KV++ M+
Sbjct: 694 ILIDGWA-RRGDVWEAADLMKQMKEDGVPPNIHTYTSYINACCKAGDMQRAQKVIEEMAD 752
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
P+L++Y+ +I + A + A++ +EM L GL P +
Sbjct: 753 VGLKPNLKTYTTLIKGWAKASLPDRALKSFEEMKL-AGLKPDEA 795
Score = 42.0 bits (97), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 32/170 (18%), Positives = 68/170 (40%), Gaps = 1/170 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I EM+S G + T + L+S + A + + M + PD Y+++I A
Sbjct: 466 ISKEMESYGIKHNNKTYSMLISGFIHLHDFANAFSIFEEMLKSGLQPDRAIYNLLIEAFC 525
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ A+ ++++M + P + +M +A+ +++ + R GC
Sbjct: 526 KMGNMDRAIRILEKMQKER-MQPSNRAFRPIIEGFAVAGDMKRALNILDLMRRSGCAPTV 584
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
Y ++ G ++ + A + M+ G P ++ G A G+
Sbjct: 585 MTYNALIHGLIKKNQVERAVSVLNKMSIAGITPNEHTYTIIMRGYAANGD 634
>gi|302809414|ref|XP_002986400.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
gi|300145936|gb|EFJ12609.1| hypothetical protein SELMODRAFT_123901 [Selaginella moellendorffii]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD GT +Y+VS LC ++ AA +GM +PD +YS +I A K N A+++
Sbjct: 42 PDVGTYHYIVSGLCKANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQL 101
Query: 229 MKEM 232
+EM
Sbjct: 102 FEEM 105
>gi|147782978|emb|CAN70810.1| hypothetical protein VITISV_034914 [Vitis vinifera]
Length = 708
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 5/206 (2%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R +++ P +L W R S+ + +L EM +G+ PD T N + S C
Sbjct: 372 RRVKNKVKPDANTYNILFFGWCRVRNPSRGMR-VLEEMIEMGHTPDSFTYNTAIDSFCKA 430
Query: 185 DQLVEAAKVLKGM---SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ EA ++ + M S P ++Y+I+I A+ + +T + +++K+M+ N G++P
Sbjct: 431 GMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMI-NSGVLPD 489
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+V + ++ +A + +E + KG Y ++ E ++ A
Sbjct: 490 VSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYG 549
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGE 327
M E G +P + ++ +GE
Sbjct: 550 RMIEAGCVPSVHTFNMLISMFFEIGE 575
Score = 43.9 bits (102), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M + G PD T ++ +C ++ EA K L+ M + PD+ +Y+ + +
Sbjct: 477 LIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLC 536
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K+ +A+ + M+ G +P + + E A E ++++GC
Sbjct: 537 ENKKSEEALGLYGRMI-EAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDT 595
Query: 278 QGYEVVVEGCLECRE 292
Y V++EG C +
Sbjct: 596 DTYCVMIEGLFNCNK 610
Score = 38.9 bits (89), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 19/185 (10%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPL 118
E P+ F++ + + ++ E E F +R + + S T ++ + L
Sbjct: 410 EMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGST------MSSPTAKTYAIMIL 463
Query: 119 ALAILQRT----------LRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY 167
AL RT + SG +P V + ++ L + + L EM + GY
Sbjct: 464 ALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEE--AYKFLEEMGNKGY 521
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N + LC + EA + M A CVP + +++++I + + A E
Sbjct: 522 RPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFE 581
Query: 228 MMKEM 232
EM
Sbjct: 582 TWHEM 586
>gi|125606425|gb|EAZ45461.1| hypothetical protein OsJ_30113 [Oryza sativa Japonica Group]
Length = 422
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/175 (25%), Positives = 76/175 (43%), Gaps = 1/175 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q ++ A++L EM G D ++++LC QL EA ++L M E PD+
Sbjct: 202 RRGQVRTAANLLDEMLHRGIPADPLAYTTVLNALCRKKQLREAYRLLCLMRGREVSPDIV 261
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
Y+ VI M + DA ++ ++M G P V L + KA ++
Sbjct: 262 HYNTVIVGMCREGRPLDACKVFRDM-RESGCAPNAVAYTAVVNRLCVSGLYDKAEAYLDD 320
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ KG F + V++GC + A + M + G +P+ + V+ +
Sbjct: 321 MLGKGLLPHFSVFHSVIKGCCAVGKVNEAAGMMTRMLDLGMVPHAETWSSVIRSV 375
>gi|326491875|dbj|BAJ98162.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 628
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/222 (23%), Positives = 97/222 (43%), Gaps = 19/222 (8%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEE---ACQNPNPFSF---LSNFP 74
+ +LR + S+ T ++A ++K ++ E+ FE + +P+PF++ + F
Sbjct: 356 EMETLRCIPSVVTYNTIIKALFESK--SRVSEISSWFERMKGSGISPSPFTYSILIDGFC 413
Query: 75 QNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
+ +R + +++EM E P P AY L+ L LA + Q L+
Sbjct: 414 KTNRTEKAMMLLEEMDEKGFPPCP-----AAYCSLID-ALGKAKRYDLANELFQE-LKEN 466
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
C + L + + D+ EM +G P+ N L+S L L EA
Sbjct: 467 CGSSSARVYAVMIKHLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMSGLARAGMLDEA 526
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
++ M C+PD+ SY+I++ A++ + A+ M+ M
Sbjct: 527 LTTMRRMQDHGCIPDINSYNIILNALAKTGGPDRAMGMLCNM 568
Score = 43.1 bits (100), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 86/206 (41%), Gaps = 18/206 (8%)
Query: 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP 74
F PC + SL + A AK Y EL +E C + + +
Sbjct: 433 FPPCPAAYCSL------------IDALGKAKRYDLANELFQELKENCGSSSARVYAVMIK 480
Query: 75 QNHRIKVIDEMLESFIPL-RPRSRPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCV 132
+ +D+ ++ F + R P + AY+ L+S L L AL ++R GC+
Sbjct: 481 HLGKAGRLDDAVDLFDEMNRLGCTPNVYAYNALMS-GLARAGMLDEALTTMRRMQDHGCI 539
Query: 133 P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191
P + ++L++ L + +L MK PD + N ++ +L EAA
Sbjct: 540 PDINSYNIILNA--LAKTGGPDRAMGMLCNMKQSAIKPDAVSYNTVLGALSHAGMFEEAA 597
Query: 192 KVLKGMSSAECVPDLESYSIVIGAMS 217
K++K M++ DL +YS ++ A+
Sbjct: 598 KLMKEMNAIGFDYDLITYSSILEAIG 623
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 75/171 (43%), Gaps = 2/171 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ EM+ G PD N +++ L +L +A K+ + M + C+P + +Y+ +I A+
Sbjct: 317 NFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEMETLRCIPSVVTYNTIIKAL 376
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275
++ + E + G+ P I + + NR KA+ ++E ++ KG P
Sbjct: 377 FESKSRVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTE-KAMMLLEEMDEKGFPP 435
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ + + Y LA + + E +V +++ L G
Sbjct: 436 CPAAYCSLIDALGKAKRYDLANELFQELKENCGSSSARVYAVMIKHLGKAG 486
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 50/225 (22%), Positives = 89/225 (39%), Gaps = 7/225 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L +G P +I +L A L + + EM+ PD T L+
Sbjct: 245 AIWLLNEMKDNGMQPTAKIYTMLM-ALLFKLDNVHGALGLFEEMRHQYCRPDVFTYTELI 303
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L +L EA M C PD + +I + A + +DA+++ +EM +
Sbjct: 304 RGLGKAGRLDEAYNFFHEMRREGCRPDTVLMNNMINFLGKAGRLDDAIKLFEEME-TLRC 362
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQ--GYEVVVEGCLECREYIL 295
+P + AL ++ + E+ + ER KG I Y ++++G +
Sbjct: 363 IPSVVTYNTIIKALFESKS--RVSEISSWFERMKGSGISPSPFTYSILIDGFCKTNRTEK 420
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E+GF P +++ L + LA + Q E
Sbjct: 421 AMMLLEEMDEKGFPPCPAAYCSLIDALGKAKRYDLANELFQELKE 465
>gi|297737746|emb|CBI26947.3| unnamed protein product [Vitis vinifera]
Length = 1078
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/171 (23%), Positives = 69/171 (40%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G+ PD N +V LC + L EA+++L+ M S +PD +Y+ +I A
Sbjct: 504 EMLAKGFPPDLIIYNVVVDGLCKLGNLEEASELLQKMVSDGVIPDYVTYTSIIHAHLENG 563
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ E+ EM L+ GL P + + +A ++ KG Y
Sbjct: 564 RLRKGREIFYEM-LSKGLTPSVVTYTVLIHGHAGKGRLERAFIYFSEMQEKGILPNVITY 622
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++ G + R A M E+G P ++ +G W+ A
Sbjct: 623 NSLINGLCKVRRMDQAYNFFAEMVEKGIFPNKYSYTILINENCNMGNWQEA 673
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 3/151 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
E++SI P T N L+ LC +L A ++ M + PD+ +Y+I++
Sbjct: 399 ELRSIYLFPTIVTYNTLLDGLCRQGELEVAQQLKVEMINEGIAPDIVTYTILVNGSCKMG 458
Query: 221 KTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ A E EM L+ GL + ++ L+ + +A + E + KG P
Sbjct: 459 SLSMAQEFFDEM-LHEGLELDSYAYATRIVGELKLG-DTSRAFSLQEEMLAKGFPPDLII 516
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y VVV+G + A + + M G IP
Sbjct: 517 YNVVVDGLCKLGNLEEASELLQKMVSDGVIP 547
>gi|222631078|gb|EEE63210.1| hypothetical protein OsJ_18020 [Oryza sativa Japonica Group]
Length = 975
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 45/85 (52%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR ++ D+L EM++ G+ P C +V LC ++ EA + L GM +PD+
Sbjct: 522 RRKDPKAALDLLREMQTNGHPPWIKNCTEMVQQLCFSGRVTEAVQFLDGMLQIGFLPDIV 581
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+YS + M + +DA+ + +++
Sbjct: 582 TYSAAMNGMCNTGEVDDALHLFRDI 606
>gi|326498263|dbj|BAJ98559.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 592
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 46/79 (58%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
A+I+ M++ G+ PD T + L+ LC + EA +VL M + C PDL++++++I
Sbjct: 353 AAEIVERMRTAGHQPDNITYSQLIFGLCKAAKCDEARQVLDEMEAEGCTPDLKTWTMLIQ 412
Query: 215 AMSTARKTNDAVEMMKEMV 233
A + + A++ + EM+
Sbjct: 413 GHCAAGEVDKALQYLTEMI 431
Score = 42.7 bits (99), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/117 (23%), Positives = 56/117 (47%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM++ G PD T L+ CA ++ +A + L M + D + +++ +
Sbjct: 391 VLDEMEAEGCTPDLKTWTMLIQGHCAAGEVDKALQYLTEMIEKDLEADADLLDVMVKGLC 450
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
K + A + EMV N L P QG + A L +++ +A+ +++ ++ + P
Sbjct: 451 RQDKFDAAYTLFVEMVDNAKLTPWQGTYKHIIAELLRVKKLEEALALLKSMKARKFP 507
>gi|78708657|gb|ABB47632.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
Group]
Length = 1080
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 59/122 (48%), Gaps = 1/122 (0%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
SQSV +I MK+ GY+ + ++ +LC + ++ EA ++ M VP+ SY+
Sbjct: 315 DSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALEMFDEMKQKGIVPEQYSYN 374
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
+I A + DA+E+ K M ++ G P + + E KA++ E ++
Sbjct: 375 SLISGFLKADRFGDALELFKHMDIH-GPKPNGYTHVLFINYYGKSGESIKAIQRYELMKS 433
Query: 271 KG 272
KG
Sbjct: 434 KG 435
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 45/89 (50%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L R + + V +L EM Y P+ T N ++ LC + +A +L M++ C+
Sbjct: 553 AGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMTTKGCI 612
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEM 232
PDL SY+ VI + + N+A + +M
Sbjct: 613 PDLSSYNTVIYGLVKEERYNEAFSIFCQM 641
Score = 47.8 bits (112), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 38/167 (22%), Positives = 74/167 (44%), Gaps = 5/167 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ E+K++G PD T ++ + EA K+ M CVPD+ + + +I +
Sbjct: 462 VFHELKAMGVSPDTITYTMMIKCCSKASKFDEAVKIFYDMIENNCVPDVLAVNSLIDTLY 521
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A + ++A + ++ M L P G + A L ++ + + ++E + P
Sbjct: 522 KAGRGDEAWRIFYQLK-EMNLEPTDGTYNTLLAGLGREGKVKEVMHLLEEMYHSNYPPNL 580
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y +++ CL C+ + A + MT +G IP + V+ GL
Sbjct: 581 ITYNTILD-CL-CKNGAVNDALDMLYSMTTKGCIPDLSSYNTVIYGL 625
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 46/238 (19%), Positives = 96/238 (40%), Gaps = 3/238 (1%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+ Y+ ++S ++S L A+ + + G P P L L + + + ++
Sbjct: 826 VTYNTIISGLVKS-RRLEQAIDLYYNLMSQGFSPTPCTYGPLLDGLL-KAGRIEDAENLF 883
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM G +C N L++ + + + M PD++SY+I+I + A
Sbjct: 884 NEMLEYGCKANCTIYNILLNGHRIAGNTEKVCHLFQDMVDQGINPDIKSYTIIIDTLCKA 943
Query: 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279
+ ND + +++ L MGL P + L ++ + +AV + +++KG
Sbjct: 944 GQLNDGLTYFRQL-LEMGLEPDLITYNLLIDGLGKSKRLEEAVSLFNEMQKKGIVPNLYT 1002
Query: 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
Y ++ + + AGK + +G+ P + ++ G + G A R
Sbjct: 1003 YNSLILHLGKAGKAAEAGKMYEELLTKGWKPNVFTYNALIRGYSVSGSTDSAYAAYGR 1060
Score = 42.7 bits (99), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 84/192 (43%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL + + + G VP + +L A+ +RR ++V +L EM++ G P+ + +
Sbjct: 179 ALEVYRVMMVDGVVPSVRTYSVLMVAFGKRR-DVETVLWLLREMEAHGVKPNVYSYTICI 237
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L + EA ++L M + C PD+ +++++I + A + +DA ++ +M
Sbjct: 238 RVLGQAKRFDEAYRILAKMENEGCKPDVITHTVLIQVLCDAGRISDAKDVFWKMK-KSDQ 296
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + N + +E+ ++ G Y V++ + A +
Sbjct: 297 KPDRVTYITLLDKFGDNGDSQSVMEIWNAMKADGYNDNVVAYTAVIDALCQVGRVFEALE 356
Query: 299 TVMGMTERGFIP 310
M ++G +P
Sbjct: 357 MFDEMKQKGIVP 368
Score = 40.0 bits (92), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 53/116 (45%), Gaps = 3/116 (2%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ I + + CVP V + L+ + + R I ++K + P GT N L
Sbjct: 494 AVKIFYDMIENNCVPDVLAVNSLIDTLYKAGR--GDEAWRIFYQLKEMNLEPTDGTYNTL 551
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ L ++ E +L+ M + P+L +Y+ ++ + NDA++M+ M
Sbjct: 552 LAGLGREGKVKEVMHLLEEMYHSNYPPNLITYNTILDCLCKNGAVNDALDMLYSMT 607
>gi|302813971|ref|XP_002988670.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
gi|300143491|gb|EFJ10181.1| hypothetical protein SELMODRAFT_128601 [Selaginella moellendorffii]
Length = 318
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD GT +Y+VS LC ++ AA +GM +PD +YS +I A K N A+++
Sbjct: 42 PDVGTYHYIVSGLCKANKTKMAAMYFEGMKKLGLLPDTMTYSTMIDCYGRAGKVNRALQL 101
Query: 229 MKEM 232
+EM
Sbjct: 102 FEEM 105
>gi|125541207|gb|EAY87602.1| hypothetical protein OsI_09013 [Oryza sativa Indica Group]
Length = 555
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 1/183 (0%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L + Q + +++ EM+ G PD T L+ + +D+L A VL M+ A
Sbjct: 336 AALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFP 395
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ +Y+ + + +K +DA+E+ + M+ P + RE +A+
Sbjct: 396 PDIVTYNCFLKVLCGLQKADDALELCERMI-EAHCEPSVHTYNMLMVMFFEMREPDRAIN 454
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+ ++++GC YE +++G + A + + RG K ++ L+
Sbjct: 455 IWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATTLLDEVINRGMKLSYKKFDAIMLRLS 514
Query: 324 GVG 326
VG
Sbjct: 515 AVG 517
>gi|326531326|dbj|BAK05014.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 537
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/132 (21%), Positives = 56/132 (42%), Gaps = 4/132 (3%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ + M G +PD CN ++ LC ++ EA K+ M+ C D+ +Y+ +I
Sbjct: 305 TAVKLFTSMWEKGINPDVAICNCIIDQLCFKKKIPEALKIFGEMNDRGCQADVATYNTLI 364
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
R+T E++ +M G P + R++ + +I+ +E GC
Sbjct: 365 KHFCKIRRTEKVYELLDDME-KKGCSPNNMTYTYILKTTEKPRDV---MNLIQRMEESGC 420
Query: 274 PIGFQGYEVVVE 285
+ Y +++
Sbjct: 421 KLDSDTYNLILN 432
>gi|115448805|ref|NP_001048182.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|46805701|dbj|BAD17102.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|47497356|dbj|BAD19395.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
sativa Japonica Group]
gi|113537713|dbj|BAF10096.1| Os02g0759500 [Oryza sativa Japonica Group]
gi|125583759|gb|EAZ24690.1| hypothetical protein OsJ_08460 [Oryza sativa Japonica Group]
gi|215704115|dbj|BAG92955.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215766866|dbj|BAG99094.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 555
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/183 (22%), Positives = 80/183 (43%), Gaps = 1/183 (0%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
A L + Q + +++ EM+ G PD T L+ + +D+L A VL M+ A
Sbjct: 336 AALAKAGQMEECFELISEMRKCGCMPDVSTYKDLIEGMLLVDKLDAAYCVLDEMAKAGFP 395
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ +Y+ + + +K +DA+E+ + M+ P + RE +A+
Sbjct: 396 PDIVTYNCFLKVLCGLQKADDALELCERMI-EAHCEPSVHTYNMLMVMFFEMREPDRAIN 454
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
+ ++++GC YE +++G + A + + RG K ++ L+
Sbjct: 455 IWIEMDKRGCHRAVDTYETMIDGLFDSGRTEDATALLDEVINRGMKLSYKKFDAIMLRLS 514
Query: 324 GVG 326
VG
Sbjct: 515 AVG 517
>gi|357120446|ref|XP_003561938.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g16880-like [Brachypodium distachyon]
Length = 787
Score = 50.8 bits (120), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 75/172 (43%), Gaps = 4/172 (2%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L MK G P T N LVS+ + + +A KV++ M++ PDL +Y+++ +
Sbjct: 261 LLARMKKDGVAPTRPTYNTLVSAYARLGWIKQATKVVEAMTANGFEPDLWTYNVLAAGLC 320
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
A K ++A + EM L+P +A A R A+ ++E + KG
Sbjct: 321 QAGKVDEAFRLKDEMERLGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATL 380
Query: 278 QGYEVVVEGCLECREYILAGKT--VMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +V++G C++ L G + M + G P + ++ G
Sbjct: 381 VTHNIVIKGL--CKDGELEGALGCLNKMADDGLAPDVITYNTLIHAHCKAGN 430
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 56/251 (22%), Positives = 96/251 (38%), Gaps = 27/251 (10%)
Query: 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153
P + P+ + D S LHP +L T C
Sbjct: 181 PSTSPQASLDAFRSIVALRLHPNHYTFNLLVHT----------------------HCSKG 218
Query: 154 SVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
++AD L M+ G PD T N L+++ C L EA +L M P +Y+
Sbjct: 219 TLADALSTLSTMQGFGLSPDAVTYNTLLNAHCRKGMLGEARALLARMKKDGVAPTRPTYN 278
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270
++ A + A ++++ M N G P +AA L ++ +A + + +ER
Sbjct: 279 TLVSAYARLGWIKQATKVVEAMTAN-GFEPDLWTYNVLAAGLCQAGKVDEAFRLKDEMER 337
Query: 271 KGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
G + Y + + C +CR A + + M E+G + V++GL GE +
Sbjct: 338 LGTLLPDVVTYNTLADACFKCRCSSDALRLLEEMREKGVKATLVTHNIVIKGLCKDGELE 397
Query: 330 LATVVRQRFAE 340
A + A+
Sbjct: 398 GALGCLNKMAD 408
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 67/172 (38%), Gaps = 1/172 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P T N L+ L + +L EA L + VPD +Y+I+I A +A +
Sbjct: 518 PSISTYNTLIKGLSRMGRLKEAIDKLNELMEKGLVPDDTTYNIIIHAYCKEGDLENAFQF 577
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+MV N P + L N ++ KA+++ E KG + Y +++
Sbjct: 578 HNKMVEN-SFKPDVVTCNTLMNGLCLNGKLDKALKLFESWVEKGKKVDVITYNTLIQTMC 636
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+ + A M RG P V+ L+ G + A + + AE
Sbjct: 637 KDGDVDTALHFFADMEARGLQPDAFTYNVVLSALSEAGRTEEAQNMLHKLAE 688
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 46/191 (24%), Positives = 78/191 (40%), Gaps = 2/191 (1%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L+ A + RC S ++ +L EM+ G T N ++ LC +L A L M+
Sbjct: 351 LADACFKCRCSSDALR-LLEEMREKGVKATLVTHNIVIKGLCKDGELEGALGCLNKMADD 409
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
PD+ +Y+ +I A A A +M EMV GL + V L + +
Sbjct: 410 GLAPDVITYNTLIHAHCKAGNIAKAYTLMDEMV-RRGLKLDTFTLNTVLYNLCKEKRYEE 468
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A +++ ++G Y V+ + A + M E+ P I +++
Sbjct: 469 AQGLLQSPPQRGFMPDEVSYGTVMAAYFKEYNSEPALRLWDEMIEKKLTPSISTYNTLIK 528
Query: 321 GLAGVGEWKLA 331
GL+ +G K A
Sbjct: 529 GLSRMGRLKEA 539
>gi|413944227|gb|AFW76876.1| hypothetical protein ZEAMMB73_037126 [Zea mays]
Length = 595
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 63/139 (45%), Gaps = 1/139 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R+ + ++L EMK +G PD T N L+S LC ++L M C P +
Sbjct: 394 RKKKLHEAYELLEEMKGVGLQPDVYTYNTLLSGLCKAGDFSAVDELLGHMIDDGCQPSVV 453
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
++ ++ A KT++A+ + + M + P + + L +RE+ A+++ +
Sbjct: 454 TFGTLVHGYCKAGKTDEALRIFRSMD-EARIQPNTVIYNTLIDFLCKSREVDVAIKLFDE 512
Query: 268 LERKGCPIGFQGYEVVVEG 286
+ K P Y +++G
Sbjct: 513 MREKNVPANVTTYNALLKG 531
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 72/160 (45%), Gaps = 10/160 (6%)
Query: 141 LSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+SA+L C + +A ++ EM G+ PD ++S L +L++A M
Sbjct: 318 LASAFLH--CNNVDMAMELFHEMADHGHRPDAVMYFTMISGLTQAGRLLDACTTAASMKK 375
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
A D ++Y+I+IG +K ++A E+++EM +GL P + + L +
Sbjct: 376 AGFKLDAKAYNILIGGFCRKKKLHEAYELLEEMK-GVGLQPDVYTYNTLLSGLCKAGDFS 434
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
E++ + GC + +V G Y AGKT
Sbjct: 435 AVDELLGHMIDDGCQPSVVTFGTLVHG------YCKAGKT 468
Score = 38.9 bits (89), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 50/215 (23%), Positives = 85/215 (39%), Gaps = 8/215 (3%)
Query: 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL--EMKSIGYHPDCGTC 174
P +LA L +P P LLLS L RR S + A L + S PD
Sbjct: 78 PASLASLHSLAARHRIPPPSA-LLLSK--LVRRFSSPAEAAGFLRDSLASGAPAPDISIF 134
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+++L L ++ M A PD+ +Y I++ + + DA++++ M
Sbjct: 135 NSLLTALGRAGNLRGMTELFTSMRDASVKPDVVTYGILLNGLCKSGHVGDALKVLDRMSS 194
Query: 235 -NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER--KGCPIGFQGYEVVVEGCLECR 291
+ P ++ V L + +A+ ++ R GC Y + +
Sbjct: 195 PGSDVCPDIAILNTVVDGLCKIGRLQQAIIFVDERMRHVHGCAPNAVTYNCLADAFCRVG 254
Query: 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ +A K V M + G P + ++ GL VG
Sbjct: 255 DIGMACKIVARMEKEGVAPNVITMNTIIGGLCRVG 289
>gi|9502388|gb|AAF88095.1|AC025417_23 T12C24.15 [Arabidopsis thaliana]
Length = 735
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/187 (20%), Positives = 81/187 (43%), Gaps = 4/187 (2%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++ EM+ G+ D L+ C + + AK+L+ M + PD+ ++S +I
Sbjct: 268 NLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMIKRKITPDVVAFSALIDCF 327
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A E+ KEM+ G+ P + ++ KA M++ + KGC
Sbjct: 328 VKEGKLREAEELHKEMI-QRGISPDTVTYTSLIDGFCKENQLDKANHMLDLMVSKGCGPN 386
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
+ + +++ G + + M+ RG + +++G +G+ ++A ++
Sbjct: 387 IRTFNILINGYCKANLIDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLEVA---KE 443
Query: 337 RFAELKS 343
F E+ S
Sbjct: 444 LFQEMVS 450
Score = 47.0 bits (110), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 39/181 (21%), Positives = 80/181 (44%), Gaps = 2/181 (1%)
Query: 149 RCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RC+ S+A + ++ +GY PD T + L++ LC ++ EA +++ M P L
Sbjct: 119 RCRKLSLAFSAMGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLI 178
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+ + ++ + K +DAV ++ MV G P + V + + + A+E++
Sbjct: 179 TLNALVNGLCLNGKVSDAVLLIDRMV-ETGFQPNEVTYGPVLKVMCKSGQTALAMELLRK 237
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + + Y ++++G + A M +GF I + ++ G G
Sbjct: 238 MEERKIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGR 297
Query: 328 W 328
W
Sbjct: 298 W 298
Score = 39.7 bits (91), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 30/118 (25%), Positives = 50/118 (42%), Gaps = 1/118 (0%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L AL+ L R L++G P V LL LE + MK++GY P+ T
Sbjct: 600 LRFALSTLARMLKAGHEPDVFTFTTLLRPFCLEENASVYDAPTLFKNMKAMGYKPNVVTY 659
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N ++ L + + + VL M C P+ + S I + A+ ++++M
Sbjct: 660 NTVIKGLLNGNMISQVPGVLDQMFERGCQPNAVTKSTFISGLCKQDLHGSAILLLRKM 717
>gi|238011542|gb|ACR36806.1| unknown [Zea mays]
Length = 369
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/182 (21%), Positives = 80/182 (43%), Gaps = 14/182 (7%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA-AKVLKGMSSAECVPDLESYSIVIGAMS 217
++M G D N L+S+LC ++L +A A + + A PD +SY+I++
Sbjct: 165 FMDMPRYGMTRDTPALNSLLSALCRANRLDDARAAIPVARAEAGTRPDADSYAILLEGSE 224
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQ----GMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A A E+ EMV +G P + + ++ + +A+E + L R GC
Sbjct: 225 AAADLRVAREVFDEMVQAIGFYPDNVPAYDSFLTTLVSSDSSTALPEAMEYLNVLSRHGC 284
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTE-----RGFIPYIKVRQKVVEGLAGVGEW 328
G + + + L+ R+ + M + + RG +P +++ +++ +G
Sbjct: 285 SPGEKFFRAALAAHLDARQL----RGAMNLWDDFVGRRGLVPDMEMYNTMIKLQGSLGHA 340
Query: 329 KL 330
+L
Sbjct: 341 EL 342
>gi|414591648|tpg|DAA42219.1| TPA: PPR-814b [Zea mays]
Length = 827
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 49/235 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ LE C+++ DILL +G P
Sbjct: 138 HRPELALAFFGQLLRTGL----RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 193
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C P++ +Y+ VI N A +
Sbjct: 194 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 253
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P Y VV
Sbjct: 254 LFKEMV------------------------------------QRGIPPDLVTYNSVVHAL 277
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ R A + M + +P ++ G + G+WK A V F E++
Sbjct: 278 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMR 329
Score = 42.4 bits (98), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 32/147 (21%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD + L+ C + ++ +A +V M SA P+
Sbjct: 525 LGRVMDAQNIFDLTV---NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 581
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + +A R + ++
Sbjct: 582 VVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQAGRTVPAKMKF 640
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 641 HEMTE-SGIAMDICTYNIVLRGLFKNR 666
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ D+ M G PD T N L+ + L +A + M PD+ +Y VI
Sbjct: 390 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 449
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ K +DA+E +M+ + G+ P + + + + KA E+I + G
Sbjct: 450 AALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 508
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++ + ++ + + +T G P V +++G VG+ + A
Sbjct: 509 HLDIVFFSSIINNLCKLGR-VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKA 566
>gi|357498031|ref|XP_003619304.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355494319|gb|AES75522.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 805
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 91/199 (45%), Gaps = 24/199 (12%)
Query: 48 QQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPK- 99
+ + E L F E PN S+ + F ++ R+ K++D+M R R +P
Sbjct: 412 KMVDEALNLFTEMHCKPNTVSYNTLIDGFCKSGRLSHAWKLLDQM-------RDRGQPPN 464
Query: 100 -IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158
I Y+ LL + L H + A+A++ G P + + ++ C+ + D
Sbjct: 465 VITYNSLL-HALCKNHHVDKAIALVNNFKDQGIQP----DMHTYNTLVDGLCKQGRLKDA 519
Query: 159 LLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
L + + GY+ T N +++ LC L EA +L M C+PD+ +Y +I A
Sbjct: 520 QLIFQDLLIKGYNLPTWTYNIMINGLCLEGLLDEAETLLSKMEDNGCIPDVVTYQTIIHA 579
Query: 216 MSTARKTNDAVEMMKEMVL 234
+ + + A ++++E+++
Sbjct: 580 LFEKDENDKAEKLVRELIV 598
>gi|297849166|ref|XP_002892464.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297338306|gb|EFH68723.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 555
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 63/281 (22%), Positives = 118/281 (41%), Gaps = 44/281 (15%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVA 156
+ Y+ L++Y + + +AL I Q L G ++ + + L C ++ V
Sbjct: 276 VTYNSLVNYNCRRGNLEEVALVI-QHILSHGL----ELNTVTYNTLLHSLCSNEYWDEVE 330
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+IL M Y P T N L++ LC L A M +C+PD+ +Y+ ++GAM
Sbjct: 331 EILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTLLGAM 390
Query: 217 STARKTNDAVE---MMKEMVLNMGL---------MPRQGMVIK----------------- 247
S +DA+E ++K GL + R+G++ K
Sbjct: 391 SKEGMVDDAIELLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDD 450
Query: 248 ------VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+ RAN + +A ++++ +G I Y +V++G + RE +A + V
Sbjct: 451 ITRRSLIYGFCRANL-VEEASQVLKETSNRGNGIRGSTYRLVIQGLCKKREMEMAIEVVE 509
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
M G P + +V+G+ +G A ++++ + K
Sbjct: 510 IMLTSGCKPDETIYTAIVKGVEEMGMGSEAVQLQKKLTQWK 550
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 146 LERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
L C + + D ++ + H P +C+ LV L IDQL +A +L+ M +
Sbjct: 107 LHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDKAMVILRIMVMSGG 166
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
VPD +Y+++IG + A+ ++++M L+ G P VI +R + A
Sbjct: 167 VPDTITYNMIIGNLCKKGHIRSALVLLEDMSLS-GSPPD---VITYNTVIRCMFDHGNAE 222
Query: 263 EMIEFLE---RKGCPIGFQGYEVVVEGCLECR 291
+ I F + R GCP Y V+VE L CR
Sbjct: 223 QAIRFWKDQLRNGCPPYMITYTVLVE--LVCR 252
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 57/247 (23%), Positives = 94/247 (38%), Gaps = 48/247 (19%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + LR+GC P I + + R C S D+L +M G +PD T N LV
Sbjct: 224 AIRFWKDQLRNGCPPY-MITYTVLVELVCRYCGSARAMDVLEDMAVEGCYPDIVTYNSLV 282
Query: 179 S-----------------------------------SLCAIDQLVEAAKVLKGMSSAECV 203
+ SLC+ + E ++L M
Sbjct: 283 NYNCRRGNLEEVALVIQHILSHGLELNTVTYNTLLHSLCSNEYWDEVEEILNIMYQTSYC 342
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
P + +Y+I+I + AR + A++ +M L +P + A+ + A+E
Sbjct: 343 PTVITYNILINGLCKARLLSRAIDFFYQM-LEQKCLPDIVTYNTLLGAMSKEGMVDDAIE 401
Query: 264 MIEFLERKGCPIGFQGYEVVVEG---------CLECREYIL-AGKTVMGMTERGFIPYIK 313
++ L+ C G Y V++G LE ++L AG + +T R I Y
Sbjct: 402 LLGLLKSTSCLPGLITYNSVIDGLARKGLMKKALELYHHMLDAGISPDDITRRSLI-YGF 460
Query: 314 VRQKVVE 320
R +VE
Sbjct: 461 CRANLVE 467
>gi|334182516|ref|NP_172730.3| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
gi|332190794|gb|AEE28915.1| helicase domain and pentatricopeptide repeat-containing protein
[Arabidopsis thaliana]
Length = 735
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
R ++ ++ D+++ K PD T L+ C + ++ + KV + +S V +
Sbjct: 347 NRLSEANNMLDLMVRNKC---SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YSI++ + K A E+ +EMV + G++P + L N ++ KA+E+ E
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMV-SHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
L++ +G Y ++EG + + A + +G P + ++ GL G
Sbjct: 463 DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Query: 327 EWKLATVVRQRFAE 340
A ++ ++ E
Sbjct: 523 SLSEANILLRKMEE 536
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++ G T N LV LC + + A +LK M S E VP++ ++++++
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A E+ KEM+ G+ P + + +A M++ + R C +
Sbjct: 313 KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + K +++RG + +V+G G+ KLA
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Score = 40.8 bits (94), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C++ +L ++ +GY PD T N L+ L ++ EA ++ M C PD+
Sbjct: 135 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVV 194
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ ++ + + T+ A++++++M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKM 219
>gi|296085006|emb|CBI28421.3| unnamed protein product [Vitis vinifera]
Length = 740
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 10/184 (5%)
Query: 118 LALAILQRTLRSGCVP-VPQIRLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGTCN 175
+AL++L+R GC P V +++ E R +++ + D ++E G P+ T
Sbjct: 531 IALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMVEQ---GLLPNVITYT 587
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + A K+ M +C+P+L +YS +I + K ++A ++KEM
Sbjct: 588 TLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEILLKEME-R 646
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG----CLECR 291
GL P + + + A ++ + GC ++ Y V+++G CL
Sbjct: 647 KGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDMGCKPNYRTYSVLLKGLQKECLLLE 706
Query: 292 EYIL 295
E I
Sbjct: 707 EKIF 710
Score = 48.5 bits (114), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 78/177 (44%), Gaps = 9/177 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCG 172
L LA + R ++ GC P + S + C V D+L EM G P
Sbjct: 249 LDLAFGVFDRMVKEGCDP----NSVTYSTLINGLCNEGRVDEALDMLEEMIEKGIEPTVY 304
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T +++LCAI+ EA +++ M C P++++Y+ +I +S K A+ + +M
Sbjct: 305 TYTLPITALCAIEHEEEAIELVARMKKRGCRPNVQTYTALISGLSRLGKLEVAIGLYHKM 364
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CL 288
L GL+P + L A+++ ++E G Q Y +++G CL
Sbjct: 365 -LKEGLVPNTVTYNALINELCVGGRFSTALKIFHWMEGHGSLANTQTYNEIIKGLCL 420
Score = 45.8 bits (107), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 83/194 (42%), Gaps = 4/194 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADI 158
I + Y +S H + +++L R +R P IR+L+ A + + VAD
Sbjct: 92 IQFFYWISKRPFYKHNMNCFISMLNRLVRDRVFAPADHIRILMIKACRNEE-EIRRVADF 150
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L E+ +G+ +CN L+ L + + A + K M ++ P L +++ +I +S
Sbjct: 151 LNEISGMGFGFSLYSCNTLLIQLAKFEMVEGARNLYKQMLNSGIQPSLLTFNTLINILSK 210
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
K +A E++ + L P + NR + A + + + ++GC
Sbjct: 211 KGKVREA-ELILSQIFQYDLSPDVFTYTSLILGHCRNRNLDLAFGVFDRMVKEGCDPNSV 269
Query: 279 GYEVVVEG-CLECR 291
Y ++ G C E R
Sbjct: 270 TYSTLINGLCNEGR 283
Score = 45.4 bits (106), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 46/213 (21%), Positives = 78/213 (36%), Gaps = 37/213 (17%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + ++ L+ G +P L + +L + + A +L MK G PD T N LV
Sbjct: 427 AMVLFEKMLKMGPLPTVVTYNTLINGYLTKG-NVNNAARLLDLMKENGCEPDEWTYNELV 485
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
S +L A+ + M P+ SY+ +I S K + A+ ++K M
Sbjct: 486 SGFSKWGKLESASFYFQEMVECGLNPNPVSYTALIDGHSKDGKVDIALSLLKRM------ 539
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
E GC + Y V+ G + + A K
Sbjct: 540 ------------------------------EEMGCNPNVESYNAVINGLSKENRFSEAEK 569
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
M E+G +P + +++GL G + A
Sbjct: 570 ICDKMVEQGLLPNVITYTTLIDGLCRNGRTQFA 602
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 2/223 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A +L +GC P L S + + + +S + EM G +P+ + L+
Sbjct: 462 AARLLDLMKENGCEPDEWTYNELVSGF-SKWGKLESASFYFQEMVECGLNPNPVSYTALI 520
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ A +LK M C P++ESY+ VI +S + ++A ++ +MV GL
Sbjct: 521 DGHSKDGKVDIALSLLKRMEEMGCNPNVESYNAVINGLSKENRFSEAEKICDKMV-EQGL 579
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+P + L N A ++ +E++ C Y ++ G + + A
Sbjct: 580 LPNVITYTTLIDGLCRNGRTQFAFKIFHDMEKRKCLPNLYTYSSLIYGLCQEGKADEAEI 639
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341
+ M +G P +++G +G A ++ +R ++
Sbjct: 640 LLKEMERKGLAPDEVTFTSLIDGFVVLGRIDHAFLLLRRMVDM 682
>gi|356540349|ref|XP_003538652.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06710,
mitochondrial-like [Glycine max]
Length = 1024
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 47/200 (23%), Positives = 89/200 (44%), Gaps = 14/200 (7%)
Query: 129 SGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185
+GC P ++ A ++ C++ ++ ++ ++M GY P+ T + L++SL
Sbjct: 638 NGCEP----NQIVYDALIDGFCKTGKLENAQEVFVKMSERGYCPNLYTYSSLINSLFKEK 693
Query: 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245
+L KVL M C P++ Y+ +I + KT +A +M +M +G P V
Sbjct: 694 RLDLVLKVLSKMLENSCTPNVVIYTDMIDGLCKVGKTEEAYRLMLKME-EVGCYPN---V 749
Query: 246 IKVAAALRANREMWKAVEMIEFLE---RKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302
I A + ++ K + +E KGC F Y V++ C A + +
Sbjct: 750 ITYTAMIDGFGKIGKIEQCLELYRDMCSKGCAPNFITYRVLINHCCSTGLLDEAHRLLDE 809
Query: 303 MTERGFIPYIKVRQKVVEGL 322
M + + +I +K++EG
Sbjct: 810 MKQTYWPRHISSYRKIIEGF 829
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 34/159 (21%), Positives = 69/159 (43%), Gaps = 3/159 (1%)
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
C++ D L ++ + PD N +VS LC EA +L M S C+P++ +Y
Sbjct: 251 CKAGRCGDALSLLEKEEFVPDTVFYNRMVSGLCEASLFQEAMDILDRMRSISCIPNVVTY 310
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
I++ + ++ M++ G P + M + A +R+ A ++ + +
Sbjct: 311 RILLSGCLGKGQLGRCKRILS-MMMTEGCYPNREMFNSLVHAYCKSRDYSYAYKLFKKMI 369
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+ GC G+ Y + + C L G ++ + E+ +
Sbjct: 370 KCGCQPGYLLYNIFIGSI--CSNEELPGSDLLELAEKAY 406
Score = 44.3 bits (103), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 57/263 (21%), Positives = 99/263 (37%), Gaps = 31/263 (11%)
Query: 84 EMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSS 143
EM S + +SR DY +Y L ++ ++ GC P LL +
Sbjct: 343 EMFNSLVHAYCKSR-----DYSYAYKL------------FKKMIKCGCQP----GYLLYN 381
Query: 144 AWLERRCQSQSV-ADILLEMKSIGYHP--DCG------TCNYLVSSLCAIDQLVEAAKVL 194
++ C ++ + LLE+ Y D G + LC + +A +++
Sbjct: 382 IFIGSICSNEELPGSDLLELAEKAYSEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEII 441
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M S VPD +YS VIG + A K A + +EM N G++P + +
Sbjct: 442 CEMMSKGFVPDDSTYSKVIGFLCDASKVEKAFLLFEEMKKN-GIVPSVYTYTILIDSFCK 500
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A + + R C Y ++ L+ R+ A K M G P +
Sbjct: 501 AGLIQQARNWFDEMLRDNCTPNVVTYTSLIHAYLKARKVFDANKLFEMMLLEGSKPNVVT 560
Query: 315 RQKVVEGLAGVGEWKLATVVRQR 337
+++G G+ A + R
Sbjct: 561 YTALIDGHCKAGQIDKACQIYAR 583
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 86/197 (43%), Gaps = 12/197 (6%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q DIL M+SI P+ T L+S QL ++L M + C P+ E ++ +
Sbjct: 289 QEAMDILDRMRSISCIPNVVTYRILLSGCLGKGQLGRCKRILSMMMTEGCYPNREMFNSL 348
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-- 270
+ A +R + A ++ K+M+ G P + ++ +N E+ +++E E+
Sbjct: 349 VHAYCKSRDYSYAYKLFKKMI-KCGCQPGYLLYNIFIGSICSNEEL-PGSDLLELAEKAY 406
Query: 271 -KGCPIGFQGYEVVVEGCLEC----REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ +G +V V C ++ A + + M +GF+P KV+ L
Sbjct: 407 SEMLDLGVVLNKVNVSNFARCLCGAGKFDKAFEIICEMMSKGFVPDDSTYSKVIGFLCDA 466
Query: 326 GEWKLATVVRQRFAELK 342
+ + A ++ F E+K
Sbjct: 467 SKVEKAFLL---FEEMK 480
Score = 37.4 bits (85), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 32/159 (20%), Positives = 66/159 (41%), Gaps = 1/159 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T LV LC +++ EA ++L MS C P+ Y +I K +A E+
Sbjct: 607 PNIITYGALVDGLCKANRVEEAHELLDTMSVNGCEPNQIVYDALIDGFCKTGKLENAQEV 666
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
+M G P + +L + + ++++ + C Y +++G
Sbjct: 667 FVKMS-ERGYCPNLYTYSSLINSLFKEKRLDLVLKVLSKMLENSCTPNVVIYTDMIDGLC 725
Query: 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + A + ++ M E G P + +++G +G+
Sbjct: 726 KVGKTEEAYRLMLKMEEVGCYPNVITYTAMIDGFGKIGK 764
>gi|255660836|gb|ACU25587.1| pentatricopeptide repeat-containing protein [Lampayo castellani]
Length = 418
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 80/186 (43%), Gaps = 4/186 (2%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
+QSV D E+ G P + N L++ + L E ++ M ++ PD+ +YS+
Sbjct: 155 AQSVFD---EITKWGLRPSVVSFNTLMNGYIRLGDLDEGFRLKSAMHASGVQPDVYTYSV 211
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+I + K NDA E+ EM+ N GL+P + + A+E + + R+
Sbjct: 212 LINGLCKESKMNDANELFGEMIGN-GLVPNGVTFTTLIDGHCKTGSIDLAMETYKEMLRQ 270
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
G Y ++ G + + A + M+ +G P +++G G+ + A
Sbjct: 271 GFSPDLITYNTLIYGLCKKGDLKQAQDLIDEMSMKGLKPDKITYTTLIDGSCKEGDLETA 330
Query: 332 TVVRQR 337
R+R
Sbjct: 331 LYYRKR 336
>gi|297832386|ref|XP_002884075.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
gi|297329915|gb|EFH60334.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
subsp. lyrata]
Length = 462
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C S+++ + ++ ++ + G+ PDC N ++ C + + EA V K M
Sbjct: 236 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAIGVYKKMKEEGV 295
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD +Y+ +I +S + + +A +K MV + G P + + E A+
Sbjct: 296 EPDQITYNTLIYGLSKSGRVEEARMYLKTMV-DAGYEPDTATYTSLMNGMCRKGESLGAL 354
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECR 291
++E +E +GC Y ++ G + R
Sbjct: 355 SLLEEMEARGCAPNDCTYNTLLHGLCKAR 383
>gi|449444522|ref|XP_004140023.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g79540-like [Cucumis sativus]
Length = 783
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/261 (21%), Positives = 116/261 (44%), Gaps = 17/261 (6%)
Query: 83 DEMLESFIPLRPRS-RPKI-AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRL 139
++ +ESF +R +P + A++ +L + ++ LALA+ + L+ P V +
Sbjct: 145 EKAVESFGLMRDFDCKPDLFAFNLILHFLVRK-EAFLLALAVYNQMLKCNLNPDVVTYGI 203
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ L + C++Q + EM G P+ + ++S LC ++ +A ++ M +
Sbjct: 204 LIHG--LCKTCKTQDALVLFDEMTDRGILPNQIIYSIVLSGLCQAKKIFDAQRLFSKMRA 261
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--- 256
+ C DL +Y++++ + +DA +++ + + ++ G + RA R
Sbjct: 262 SGCNRDLITYNVLLNGFCKSGYLDDAFTLLQLLTKDGHILGVIGYGCLINGLFRARRYEE 321
Query: 257 -EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKV 314
MW + + R+ Y +++ G L + T++G MTERG P
Sbjct: 322 AHMW-----YQKMLRENIKPDVMLYTIMIRG-LSQEGRVTEALTLLGEMTERGLRPDTIC 375
Query: 315 RQKVVEGLAGVGEWKLATVVR 335
+++G +G A +R
Sbjct: 376 YNALIKGFCDMGYLDEAESLR 396
Score = 47.0 bits (110), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 3/91 (3%)
Query: 146 LERRCQSQSV---ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ER C+S + +L+++ G PD T N L++ C + A K+ K M
Sbjct: 498 MERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLFKEMQLKGH 557
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+PD +Y +I + A + DA+E+ ++MV
Sbjct: 558 MPDSVTYGTLIDGLYRAGRNEDALEIFEQMV 588
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 14/183 (7%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G PD N L+ C + L EA + +S +C P+ +YSI+I M
Sbjct: 360 LLGEMTERGLRPDTICYNALIKGFCDMGYLDEAESLRLEISKHDCFPNNHTYSILICGMC 419
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RAN-----REMWKAVEMIE----F 267
N A + KEM +G +P + L +AN R ++ +E++ F
Sbjct: 420 KNGLINKAQHIFKEME-KLGCLPSVVTFNSLINGLCKANRLEEARLLFYQMEIVRKPSLF 478
Query: 268 LE-RKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
L +G F +V++E E + A K +M + + G +P I+ ++ G
Sbjct: 479 LRLSQGTDKVFDIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCK 538
Query: 325 VGE 327
G
Sbjct: 539 FGN 541
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 59/126 (46%), Gaps = 9/126 (7%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + ++ LC +++A K+L + + +PD+ +Y+I+I N A ++
Sbjct: 490 DIASLQVMMERLCESGMILKAYKLLMQLVDSGVLPDIRTYNILINGFCKFGNINGAFKLF 549
Query: 230 KEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
KEM L G MP G +I RA R A+E+ E + +KGC Y+ ++
Sbjct: 550 KEMQLK-GHMPDSVTYGTLID--GLYRAGRNE-DALEIFEQMVKKGCVPESSTYKTIMT- 604
Query: 287 CLECRE 292
CRE
Sbjct: 605 -WSCRE 609
>gi|115475796|ref|NP_001061494.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|34015356|gb|AAQ56545.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|34015369|gb|AAQ56557.1| putative fertility restorer [Oryza sativa Japonica Group]
gi|35215067|dbj|BAC92425.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
sativa Japonica Group]
gi|113623463|dbj|BAF23408.1| Os08g0300700 [Oryza sativa Japonica Group]
gi|215678779|dbj|BAG95216.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644436|dbj|BAI39696.1| putative fertility restorer [Oryza sativa Indica Group]
Length = 735
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 69/328 (21%), Positives = 130/328 (39%), Gaps = 19/328 (5%)
Query: 22 FSSLRSMSS------LRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQ 75
F + S++S LRT + A A D + L S A P+ +++ S
Sbjct: 57 FPDMESLASRMPARNLRTYTTLINAYCLAGDIPAAKQHLTSLLHAGLAPDSYAYTSFVLG 116
Query: 76 NHRIKVIDEMLESFI--PLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP 133
R ++ F+ PLR R Y LL + L + A+A+ C P
Sbjct: 117 YCRAGMLTHACRVFVLMPLRGCLRTAFTYTALL-HGLLGAGMVREAMAVFVGMRADSCAP 175
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ + E +++ +L E S G+ P+ N L+ C ++ A KV
Sbjct: 176 DTHVYATMVHGLCEAG-RTEEAEVLLEEAMSNGFEPNIVVYNALIDGYCNAGEMEHALKV 234
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
+GM C P++ +Y+ +I + + K A+ + MV GL P V+ A ++
Sbjct: 235 FEGMDGNRCSPNVRTYTELIHGLCKSGKVERAMVLFSRMV-EAGLEPN---VVTYTALIQ 290
Query: 254 AN---REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFI 309
+ A ++ +E G + V+++ + RE + + +G + ++G
Sbjct: 291 GQCNEGHLQCAFRLLHLMETNGLVPNDWTFSVLIDALCK-REKVEEAQLFLGSLVKKGVK 349
Query: 310 PYIKVRQKVVEGLAGVGEWKLATVVRQR 337
V +++GL G+ A + Q+
Sbjct: 350 VNEVVYTSLIDGLCKTGKIDAADELMQK 377
>gi|357521009|ref|XP_003630793.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355524815|gb|AET05269.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 584
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 83/192 (43%), Gaps = 2/192 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L + G P P + L +L+ + V + L M+ G PD T + ++
Sbjct: 275 ALRFLYKMKELGVHPNPVVFNSLIKGYLDI-TDTDGVEEALTLMEEFGIKPDVVTYSTIM 333
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
++ + + ++ M AE PD+++YSI+ A + + A ++ M GL
Sbjct: 334 NAWSSSGLMDNCEEIFDDMVKAEIEPDIQAYSILAKGYVRAGQPDKAEALLNSMT-KYGL 392
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
+ + + A +M A+ + E + G P+ + YE ++ G E ++ A +
Sbjct: 393 QANVVIFTTIISGWCAAGKMDCALRLYEKMNEMGTPLNLKTYETLIWGYGEAKQPWKAEE 452
Query: 299 TVMGMTERGFIP 310
++ M E G P
Sbjct: 453 LLVTMEESGVAP 464
>gi|387192495|gb|AFJ68660.1| hypothetical protein NGATSA_2025410, partial [Nannochloropsis
gaditana CCMP526]
Length = 527
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE-RRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA+L+R SG P RL + W +R + IL M++ G PD T +YL
Sbjct: 175 ALALLRRVFDSGLSP--DARLYNTLLWGHTKRLEWSKAMQILRLMEAKGLVPDRLTYSYL 232
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+S L +QL A + + M V P+LE YS+ + + A T AV + KEM N
Sbjct: 233 LSCLVDCNQLEVAQSLWREMRDKGHVKPNLELYSLAVDMFAKAGDTTQAVTIFKEMRRN 291
>gi|356556194|ref|XP_003546411.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g18940-like [Glycine max]
Length = 829
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 55/215 (25%), Positives = 85/215 (39%), Gaps = 38/215 (17%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL EM+ PD T N L ++ L E V+ M+S +P+ +Y+ VI A
Sbjct: 343 ILKEMEDNNCPPDSVTYNELAATYVRAGFLDEGMAVIDTMTSKGVMPNAITYTTVIDAYG 402
Query: 218 TARKTNDAV---EMMKEM-----------VLNM-GLMPRQGMVIKVAAALR-----ANRE 257
A + +DA+ +MK++ VL M G R VIKV ++ NR
Sbjct: 403 KAGREDDALRLFSLMKDLGCAPNVYTYNSVLAMLGKKSRTEDVIKVLCEMKLNGCAPNRA 462
Query: 258 MWKAVEMI------------EFLERKGCPIGFQ----GYEVVVEGCLECREYILAGKTVM 301
W + + E K C GF+ + ++ C + + K
Sbjct: 463 TWNTMLAVCSEEGKHNYVNKVLREMKNC--GFEPDKDTFNTLISAYARCGSEVDSAKMYG 520
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
M + GF P + ++ LA G+WK A V Q
Sbjct: 521 EMVKSGFTPCVTTYNALLNALARRGDWKAAESVIQ 555
Score = 37.7 bits (86), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 24/92 (26%), Positives = 45/92 (48%), Gaps = 1/92 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+ V +L EMK+ G+ PD T N L+S+ V++AK+ M + P + +Y+
Sbjct: 476 KHNYVNKVLREMKNCGFEPDKDTFNTLISAYARCGSEVDSAKMYGEMVKSGFTPCVTTYN 535
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242
++ A++ R A E + + + G P +
Sbjct: 536 ALLNALA-RRGDWKAAESVIQDMRTKGFKPNE 566
>gi|356519375|ref|XP_003528348.1| PREDICTED: putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial-like [Glycine max]
Length = 589
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 69/141 (48%), Gaps = 3/141 (2%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
+AY+ L+ + L + A +L +R G +P Q +L + + S++ I+
Sbjct: 248 VAYNSLI-HGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGMISRA-KTIM 305
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
M +G PD T N ++S C + Q+ +A KV + M +P+L +YS +I
Sbjct: 306 GFMVHVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYSSLIHGWCKT 365
Query: 220 RKTNDAVEMMKEMVLNMGLMP 240
+ N A+ ++ EMV N GL P
Sbjct: 366 KNINKALFLLGEMV-NSGLNP 385
Score = 46.2 bits (108), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 93/209 (44%), Gaps = 12/209 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
A+ + + + G +P L+ S+ + C+++++ L EM + G +PD T +
Sbjct: 336 AVKVFELMIHKGFLP----NLVTYSSLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWS 391
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ C + A ++ M + P+L++ +I++ + + ++A+ + +EM
Sbjct: 392 TLIGGFCKAGKPEAAKELFCTMHEHDQHPNLQTCAIILDGLFKCQFHSEAISLFREME-K 450
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M L + V + + ++ A E+ L KG I Y +++G C+E +L
Sbjct: 451 MNLELNVVIYNIVLDGMCSFGKLNDAQELFSCLPSKGIKIDVVAYTTMIKGL--CKEGLL 508
Query: 296 --AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A +M M E G +P V GL
Sbjct: 509 DDAENLLMKMEENGCLPNEFTYNVFVRGL 537
Score = 41.2 bits (95), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 38/183 (20%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI------G 214
+ S+G PD T +++ LC ++ V VL M P + +++ +I G
Sbjct: 96 HIYSLGIKPDVYTLTIIINCLCHLNHTVFGFSVLGVMFKIGVDPTVVTFATLINGLCAEG 155
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
++ A + D++E +MG + L + A+ +E ++ + C
Sbjct: 156 NVARAARFADSLE-------DMGHQSNSYTYGAIINGLCKAGDTSGAILYLEKIKGRNCD 208
Query: 275 IGFQ-GYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ Y +++ C++ ++ A GMT +G P + ++ GL G WK A
Sbjct: 209 LDVVIAYSTIMDSL--CKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEA 266
Query: 332 TVV 334
T +
Sbjct: 267 TTL 269
Score = 40.4 bits (93), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/145 (21%), Positives = 60/145 (41%), Gaps = 1/145 (0%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
++ SLC + EA + GM+S PDL +Y+ +I + + +A ++ M +
Sbjct: 218 IMDSLCKDGMVCEALNLFSGMTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNM-MRK 276
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
G+MP + + + +A ++ F+ G Y V+ G + A
Sbjct: 277 GIMPNVQTFNVLVDNFCKDGMISRAKTIMGFMVHVGVEPDVVTYNSVISGHCLLSQMGDA 336
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEG 321
K M +GF+P + ++ G
Sbjct: 337 VKVFELMIHKGFLPNLVTYSSLIHG 361
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 35/166 (21%), Positives = 67/166 (40%), Gaps = 1/166 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M S G PD N L+ LC + EA +L M +P+++++++++
Sbjct: 238 MTSKGIQPDLVAYNSLIHGLCNFGRWKEATTLLGNMMRKGIMPNVQTFNVLVDNFCKDGM 297
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+ A +M MV ++G+ P V + +M AV++ E + KG Y
Sbjct: 298 ISRAKTIMGFMV-HVGVEPDVVTYNSVISGHCLLSQMGDAVKVFELMIHKGFLPNLVTYS 356
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
++ G + + A + M G P + ++ G G+
Sbjct: 357 SLIHGWCKTKNINKALFLLGEMVNSGLNPDVVTWSTLIGGFCKAGK 402
>gi|147810269|emb|CAN75824.1| hypothetical protein VITISV_004157 [Vitis vinifera]
Length = 1512
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/164 (25%), Positives = 74/164 (45%), Gaps = 4/164 (2%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS ++ + +EM++ G T L+ LC L EA + + + E P++
Sbjct: 1306 CQSGRVRTAQKLFVEMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNI 1365
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
E +SI++ M A K +A + E+ N GL P + L + +AV+++
Sbjct: 1366 EVFSILLDGMCRAGKLEEAWKQFDEISKN-GLEPDTIAYNILINGLCNKGMLSEAVKLLW 1424
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+E KGC + V+++ L+ E A + + M R F P
Sbjct: 1425 QMEEKGCLPDSITFNVIIQNLLKENEIHEAIQLLEEMRNRNFSP 1468
Score = 45.1 bits (105), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/168 (23%), Positives = 73/168 (43%), Gaps = 4/168 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G+ PD T LV + + + +A ++ M+ + D ++Y I+I + ARKT A
Sbjct: 1011 GFEPDAVTVTTLVKGVWMENGIPDAVQLFDEMTKKGLLGDAKTYGILINGLCKARKTGLA 1070
Query: 226 VEMMKEMVLN-MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
+++ ++M N G + GM+I AL + +A++M + G Y ++
Sbjct: 1071 IKLHEKMKGNCKGDVFTYGMIID---ALCKDGMTTEALDMFSEMIGAGILPDVVVYSSLM 1127
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+G A + M RG + ++ GL+ G WK T
Sbjct: 1128 DGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGLSRAGLWKEVT 1175
Score = 43.1 bits (100), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 43/187 (22%), Positives = 82/187 (43%), Gaps = 8/187 (4%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ V + IL M+ G PD T N L++ LC + QL +A K+ + ++ ++
Sbjct: 1201 CKEGKVGEAQQILELMRHKGKEPDILTYNTLMNGLCLVGQLEDATKLFESLADRGIKLNV 1260
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
SY+I+I +K ++A +EM GL P + AL + + A ++
Sbjct: 1261 FSYNILINGYCKDQKIDEAFRFFEEMRPK-GLKPSTVTYNTLIGALCQSGRVRTAQKLFV 1319
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++ G + Y V+++G + A + + P I+V +++G+ G
Sbjct: 1320 EMQTCGQFLKLSTYCVLLDGLCKNGHLEEAMDLFQSIKKTEHKPNIEVFSILLDGMCRAG 1379
Query: 327 E----WK 329
+ WK
Sbjct: 1380 KLEEAWK 1386
Score = 38.5 bits (88), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 34/151 (22%), Positives = 60/151 (39%), Gaps = 1/151 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EM G PD + L+ LC +L EA + K M D+ +Y+ +I +
Sbjct: 1106 DMFSEMIGAGILPDVVVYSSLMDGLCRFGRLKEALEFFKEMEGRGISADVYTYNSLIHGL 1165
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
S A + + MV + G P + L ++ +A +++E + KG
Sbjct: 1166 SRAGLWKEVTWFLNLMV-DRGFSPDAFTFTILIDGLCKEGKVGEAQQILELMRHKGKEPD 1224
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERG 307
Y ++ G + A K + +RG
Sbjct: 1225 ILTYNTLMNGLCLVGQLEDATKLFESLADRG 1255
>gi|15221671|ref|NP_176495.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75169919|sp|Q9CAN6.1|PPR97_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g63070, mitochondrial; Flags: Precursor
gi|12323265|gb|AAG51617.1|AC010795_21 unknown protein; 38394-36551 [Arabidopsis thaliana]
gi|332195929|gb|AEE34050.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 590
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ +M++ G PD T N L+S LC + +A+++L M PDL ++ +I A
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A ++ EMV + P + + + + +E+ + ++G
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++ G + R+ A M G P I +++GL G + A VV
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVV 448
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 1/185 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q IL +M +GY P T N L++ C +++ EA ++ M PD
Sbjct: 122 RRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTV 181
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ ++ + K ++AV +++ MV+ G P V L E A+ ++
Sbjct: 182 TFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E+ Y +++G + + A M +G P + ++ L G
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGR 300
Query: 328 WKLAT 332
W A+
Sbjct: 301 WSDAS 305
Score = 38.1 bits (87), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ + R C + + + +M S G HPD T N L+ LC + A V + M
Sbjct: 397 LIHGFFQARDCDNAQM--VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQK 454
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ D+ +Y+ +I A+ A K D ++ + L G+ P
Sbjct: 455 RDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK-GVKPN 495
>gi|242091782|ref|XP_002436381.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
gi|241914604|gb|EER87748.1| hypothetical protein SORBIDRAFT_10g001520 [Sorghum bicolor]
Length = 546
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/176 (25%), Positives = 78/176 (44%), Gaps = 4/176 (2%)
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G PD LV C +L +AA+++ M +A P+ +YS+VI A K+ +A
Sbjct: 269 GRRPDATMYTVLVDGYCHRGKLQDAARIMDEMEAAGVKPNEVTYSVVIEACCKEGKSIEA 328
Query: 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
++ +EM L G +P + KV L + + +A E+ + +K P ++
Sbjct: 329 CDLTREM-LGAGYVPDTPLCAKVVDVLCQDGKAGEANEIWRQMVKKSVPPDNTVVSTLIY 387
Query: 286 GCLECREYILA-GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
C+ ++ + + ERGF+P + ++ GL GE + A V E
Sbjct: 388 WL--CKNGMVQEARGLFDELERGFVPSLLTYNSLIIGLCENGELQEAGRVWDDMVE 441
Score = 38.1 bits (87), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 5/124 (4%)
Query: 145 WLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204
WL + Q + E++ G+ P T N L+ LC +L EA +V M P
Sbjct: 388 WLCKNGMVQEARGLFDELER-GFVPSLLTYNSLIIGLCENGELQEAGRVWDDMVERRYEP 446
Query: 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL---RANREMWKA 261
+ +Y +I K+N+ + KEMV G P + + + +L + +W
Sbjct: 447 NAMTYEALIKGFCKIGKSNEGYALFKEMVAK-GCTPSKFLYQALVDSLSEPSHDDTVWTI 505
Query: 262 VEMI 265
VE +
Sbjct: 506 VEAV 509
>gi|297724097|ref|NP_001174412.1| Os05g0393900 [Oryza sativa Japonica Group]
gi|255676341|dbj|BAH93140.1| Os05g0393900 [Oryza sativa Japonica Group]
Length = 553
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/230 (21%), Positives = 92/230 (40%), Gaps = 9/230 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y L+S L S + AL +L L GC P + A+ C + +
Sbjct: 174 VTYSTLIS-GLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVHAY----CTGGRIHEAK 228
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L M + G+ P T N LV +LC + E +L+ ++ PD+ +YS + +
Sbjct: 229 RLLNTMIASGFAPSTATYNVLVEALCKVGAFEEVDALLEESTAKGWTPDVITYSSYMDGL 288
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A + + + ++ +M+ N GL P + + + + + W A ++E G
Sbjct: 289 CKAGRIDKSFALVDKMLSN-GLQPSEVTLNILLDGVCRSSTAWAAKRLLECSAELGWDAN 347
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y V+ + ++ K M ++G P VV L +G
Sbjct: 348 VVNYNTVMRKLCDEHRWLSVVKLFTDMAKKGIAPNSWTFNIVVHSLCKLG 397
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 1/146 (0%)
Query: 95 RSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQS 154
R RP A ++ L S ALA+L G P +L + R + +
Sbjct: 97 RRRPDAACFTTVAAALSSASRPGAALAVLDAMAADGVAPDAAACTVLVGVYACRLRRFDA 156
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+++ M + G PD T + L+S LC+ Q+ EA VL M C P+ +Y+ ++
Sbjct: 157 AYEVVRWMVANGVAPDVVTYSTLISGLCSAGQVAEALGVLDLMLEEGCQPNAHTYTPIVH 216
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMP 240
A T + ++A ++ M+ + G P
Sbjct: 217 AYCTGGRIHEAKRLLNTMIAS-GFAP 241
Score = 39.3 bits (90), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 84/194 (43%), Gaps = 3/194 (1%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSI-GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
RL+ + A + +L EM+++ PD + ++L + + A VL
Sbjct: 68 RLMSAHAGTRDGAGADRALHLLDEMRALLRRRPDAACFTTVAAALSSASRPGAALAVLDA 127
Query: 197 MSSAECVPDLESYSIVIGAMST-ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M++ PD + ++++G + R+ + A E+++ MV N G+ P + + L +
Sbjct: 128 MAADGVAPDAAACTVLVGVYACRLRRFDAAYEVVRWMVAN-GVAPDVVTYSTLISGLCSA 186
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
++ +A+ +++ + +GC Y +V A + + M GF P
Sbjct: 187 GQVAEALGVLDLMLEEGCQPNAHTYTPIVHAYCTGGRIHEAKRLLNTMIASGFAPSTATY 246
Query: 316 QKVVEGLAGVGEWK 329
+VE L VG ++
Sbjct: 247 NVLVEALCKVGAFE 260
>gi|2632061|emb|CAA05629.1| membrane-associated salt-inducible protein like [Arabidopsis
thaliana]
Length = 428
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 29/278 (10%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF------------S 68
Q+ + RS S L + A + +K++ ++P+L F+E Q N S
Sbjct: 146 QYGTPRSAVSFNAL---LNACLHSKNFDKVPQL---FDEIPQRYNKIIPDKISYGILIKS 199
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
+ + I+++ +M + + IA+ +LS +L L +A + ++
Sbjct: 200 YCDSGTPEKAIEIMRQMQGKGMEV-----TTIAFTTILS-SLYKKGELEVADNLWNEMVK 253
Query: 129 SGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
GC + + + SA E + V +++ EM S+G PD + NYL+++ C L
Sbjct: 254 KGCELDNAAYNVRIMSAQKE---SPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGML 310
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
EA KV +G+ C P+ ++ +I + +R + K+ V M +P +
Sbjct: 311 DEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVY-MHKIPDFNTLKH 369
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ L N++ A +I +++K P ++ + E
Sbjct: 370 LVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEE 407
>gi|356509834|ref|XP_003523650.1| PREDICTED: pentatricopeptide repeat-containing protein
At4g11690-like [Glycine max]
Length = 472
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 62/130 (47%), Gaps = 1/130 (0%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
M+ G D T L+ C + + EA K L+ M S PD+++Y +V+ RK
Sbjct: 246 MRLNGLKDDVATNTSLLKGFCIVGKSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRK 305
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
++AV +++EMV+ G+ P V L ++ + + +++ + + GC F Y
Sbjct: 306 PSEAVLLLREMVVR-GVKPNVSSFNAVFRVLVDEGKIDEGLHLLKQMPKMGCSPNFLSYC 364
Query: 282 VVVEGCLECR 291
V+ G E +
Sbjct: 365 TVICGLCEVK 374
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 44/187 (23%), Positives = 79/187 (42%), Gaps = 2/187 (1%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
+S L EM S G PD +V+ C I + EA +L+ M P++ S++
Sbjct: 270 KSDEAVKHLREMVSRGMKPDVKAYGVVVNEYCKIRKPSEAVLLLREMVVRGVKPNVSSFN 329
Query: 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANREMWKAVEMIEFLE 269
V + K ++ + ++K+M MG P V L M + E++ +
Sbjct: 330 AVFRVLVDEGKIDEGLHLLKQMP-KMGCSPNFLSYCTVICGLCEVKGRMQQVEELVSNML 388
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+ G + Y ++ G E R+ +A KTV + ++ F+ + V+ L G+ K
Sbjct: 389 QNGHNLDATMYNCLLLGYCEDRDEEMAQKTVYDIMDKNFVINQDIFCTFVKLLCAKGKLK 448
Query: 330 LATVVRQ 336
A V +
Sbjct: 449 EAETVSE 455
>gi|224713518|gb|ACN62066.1| PPR-817 [Zea mays]
Length = 817
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 49/235 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ LE C+++ DILL +G P
Sbjct: 128 HRPELALAFFGQLLRTGL----RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 183
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C P++ +Y+ VI N A +
Sbjct: 184 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 243
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P Y VV
Sbjct: 244 LFKEMV------------------------------------QRGIPPDLVTYNSVVHAL 267
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ R A + M + +P ++ G + G+WK A V F E++
Sbjct: 268 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMR 319
Score = 45.8 bits (107), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 66/147 (44%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD N L+ C + ++ +A +V M SA P+
Sbjct: 515 LGRVMDAQNIFDLTV---NVGLHPDAVVYNMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 571
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + A R + ++
Sbjct: 572 VVGYGTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFEAGRTVPAKMKF 630
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 631 HEMTE-SGIAMDICTYNIVLRGLFKNR 656
Score = 39.7 bits (91), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ D+ M G PD T N L+ + L +A + M PD+ +Y VI
Sbjct: 380 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 439
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ K +DA+E +M+ + G+ P + + + + KA E+I + G
Sbjct: 440 AALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 498
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++ + ++ + + +T G P V +++G VG+ + A
Sbjct: 499 HLDIVFFSSIINNLCKLGR-VMDAQNIFDLTVNVGLHPDAVVYNMLMDGYCLVGKMEKA 556
>gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa]
gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa]
Length = 540
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 84/182 (46%), Gaps = 14/182 (7%)
Query: 133 PVPQIR---LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189
P P +R +L+ L ++ + + EM G HPD L++ ++
Sbjct: 309 PSPDVRSYTILIRD--LCKQTKMKEAVGYFYEMVDSGCHPDAAVYTCLMTGYGNHKRMDM 366
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQGMVI 246
++LK M C PD ++Y+ +I M++ R +DAV + K+M+ N G+ P M++
Sbjct: 367 VYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKKMIQN-GIEPSIHSYNMIM 425
Query: 247 KVAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
K +R N EM AV + + +KG CP Y V + G + A K + M E
Sbjct: 426 KSYFRIR-NYEMGHAV--WDEMSKKGFCPDD-NSYTVFIGGLISQGRSEEACKYLEEMIE 481
Query: 306 RG 307
+G
Sbjct: 482 KG 483
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/177 (22%), Positives = 75/177 (42%), Gaps = 1/177 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
I EM G+ PD T N ++ L + +A K + M + PD+ SY+I+I +
Sbjct: 265 IWNEMLDEGFKPDIVTHNIMLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLC 324
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
K +AV EMV + G P + + ++ M E+++ ++ KGCP
Sbjct: 325 KQTKMKEAVGYFYEMV-DSGCHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDG 383
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ Y +++ R A + M + G P I +++ + +++ V
Sbjct: 384 KTYNALIKLMTSQRMPDDAVRIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAV 440
Score = 45.8 bits (107), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 2/179 (1%)
Query: 149 RCQSQSVADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R + +S A E MK+ G PD + L+ LC ++ EA M + C PD
Sbjct: 290 RSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSGCHPDAA 349
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
Y+ ++ ++ + E++KEM G P + + + R AV + +
Sbjct: 350 VYTCLMTGYGNHKRMDMVYELLKEMK-EKGCPPDGKTYNALIKLMTSQRMPDDAVRIYKK 408
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ + G Y ++++ R Y + M+++GF P + GL G
Sbjct: 409 MIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGLISQG 467
>gi|356504195|ref|XP_003520884.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like
[Glycine max]
Length = 1114
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 58/127 (45%), Gaps = 1/127 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL L C P+P+ + + R + + + G PD + N L+
Sbjct: 146 ALNSFYTILHFNCKPLPKHLNRILEVLVSHRNFIRPAFYLFKDAHRYGVEPDTKSYNILM 205
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ C + A + M + VPD+ESY I++ A+ + N AV+++++M LN G
Sbjct: 206 RAFCLNGDISVAYSLFNKMFKRDLVPDIESYRILMQALCRKSQVNGAVDLLEDM-LNKGF 264
Query: 239 MPRQGMV 245
+P + +V
Sbjct: 265 VPDRTLV 271
>gi|193806393|sp|P0C7Q7.1|PPR38_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
At1g12700, mitochondrial; Flags: Precursor
Length = 602
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
R ++ ++ D+++ K PD T L+ C + ++ + KV + +S V +
Sbjct: 347 NRLSEANNMLDLMVRNKC---SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YSI++ + K A E+ +EMV + G++P + L N ++ KA+E+ E
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMV-SHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
L++ +G Y ++EG + + A + +G P + ++ GL G
Sbjct: 463 DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Query: 327 EWKLATVVRQRFAE 340
A ++ ++ E
Sbjct: 523 SLSEANILLRKMEE 536
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++ G T N LV LC + + A +LK M S E VP++ ++++++
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A E+ KEM+ G+ P + + +A M++ + R C +
Sbjct: 313 KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + K +++RG + +V+G G+ KLA
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Score = 40.8 bits (94), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C++ +L ++ +GY PD T N L+ L ++ EA ++ M C PD+
Sbjct: 135 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVV 194
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ ++ + + T+ A++++++M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKM 219
>gi|224713524|gb|ACN62069.1| PPR-814c [Zea mays]
Length = 814
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/235 (22%), Positives = 93/235 (39%), Gaps = 49/235 (20%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLE-MKSIGYHP 169
H LALA + LR+G ++ +++++ LE C+++ DILL +G P
Sbjct: 125 HRPELALAFFGQLLRTGL----RVNIIIANHLLEGFCEAKRTDEALDILLHRTPELGCVP 180
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMS--SAECVPDLESYSIVIGAMSTARKTNDAVE 227
D + + L+ SLC + +A +L+ M+ A C P++ +Y+ VI N A +
Sbjct: 181 DVFSYSILLKSLCDQGKSGQADDLLRMMAEGGAVCSPNVVAYNTVIDGFFKEGDVNKACD 240
Query: 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287
+ KEMV ++G P Y VV
Sbjct: 241 LFKEMV------------------------------------QRGIPPDLVTYNSVVHAL 264
Query: 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
+ R A + M + +P ++ G + G+WK A V F E++
Sbjct: 265 CKARAMDKAEAFLRQMVNKRVLPNNWTYNNLIYGYSSTGQWKEAVRV---FKEMR 316
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/147 (22%), Positives = 67/147 (45%), Gaps = 6/147 (4%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R +Q++ D+ + ++G HPD + L+ C + ++ +A +V M SA P+
Sbjct: 512 LGRVMDAQNIFDLTV---NVGLHPDAVVYSMLMDGYCLVGKMEKALRVFDAMVSAGIEPN 568
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEM 264
+ Y ++ + ++ + + +EM L G+ P + I + +A R + V+
Sbjct: 569 VVVYCTLVNGYCKIGRIDEGLSLFREM-LQRGIKPSTILYSIIIDGLFQAGRTVPAKVKF 627
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECR 291
E E G + Y +V+ G + R
Sbjct: 628 HEMTE-SGIAMDICTYNIVLRGLFKNR 653
Score = 39.7 bits (91), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 37/179 (20%), Positives = 73/179 (40%), Gaps = 3/179 (1%)
Query: 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ D+ M G PD T N L+ + L +A + M PD+ +Y VI
Sbjct: 377 DMTDLFDLMLGDGIAPDFYTFNVLIKAYANCGMLDKAMIIFNEMRDHGVKPDVVTYRTVI 436
Query: 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A+ K +DA+E +M+ + G+ P + + + + KA E+I + G
Sbjct: 437 AALCRIGKMDDAMEKFNQMI-DQGVAPDKYAYNCLIQGFCTHGSLLKAKELISEIMNNGM 495
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ + ++ + ++ + + +T G P V +++G VG+ + A
Sbjct: 496 HLDIVFFSSIINNLCKLGR-VMDAQNIFDLTVNVGLHPDAVVYSMLMDGYCLVGKMEKA 553
>gi|225427504|ref|XP_002263624.1| PREDICTED: pentatricopeptide repeat-containing protein At1g73400,
mitochondrial-like [Vitis vinifera]
Length = 709
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/206 (21%), Positives = 91/206 (44%), Gaps = 5/206 (2%)
Query: 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R +++ P +L W R S+ + +L EM +G+ PD T N + S C
Sbjct: 399 RRVKNKVKPDANTYNILFFGWCRVRNPSRGMR-VLEEMIEMGHTPDSFTYNTAIDSFCKA 457
Query: 185 DQLVEAAKVLKGM---SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ EA ++ + M S P ++Y+I+I A+ + +T + +++K+M+ N G++P
Sbjct: 458 GMVTEATELFEFMRTKGSTMSSPTAKTYAIMILALVQSDRTEECFKLIKDMI-NSGVLPD 516
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301
+V + ++ +A + +E + KG Y ++ E ++ A
Sbjct: 517 VSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLCENKKSEEALGLYG 576
Query: 302 GMTERGFIPYIKVRQKVVEGLAGVGE 327
M E G +P + ++ +GE
Sbjct: 577 RMIEAGCVPSVHTFNMLISMFFEIGE 602
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/135 (21%), Positives = 61/135 (45%), Gaps = 1/135 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M + G PD T ++ +C ++ EA K L+ M + PD+ +Y+ + +
Sbjct: 504 LIKDMINSGVLPDVSTYKQVIEGMCLAGKVEEAYKFLEEMGNKGYRPDIVTYNCFLDVLC 563
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+K+ +A+ + M+ G +P + + E A E ++++GC
Sbjct: 564 ENKKSEEALGLYGRMI-EAGCVPSVHTFNMLISMFFEIGEPDGAFETWHEMDKRGCARDT 622
Query: 278 QGYEVVVEGCLECRE 292
Y V++EG C +
Sbjct: 623 DTYCVMIEGLFNCNK 637
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 42/185 (22%), Positives = 74/185 (40%), Gaps = 19/185 (10%)
Query: 59 EACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPL 118
E P+ F++ + + ++ E E F +R + + S T ++ + L
Sbjct: 437 EMGHTPDSFTYNTAIDSFCKAGMVTEATELFEFMRTKGST------MSSPTAKTYAIMIL 490
Query: 119 ALAILQRT----------LRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY 167
AL RT + SG +P V + ++ L + + L EM + GY
Sbjct: 491 ALVQSDRTEECFKLIKDMINSGVLPDVSTYKQVIEGMCLAGKVEE--AYKFLEEMGNKGY 548
Query: 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227
PD T N + LC + EA + M A CVP + +++++I + + A E
Sbjct: 549 RPDIVTYNCFLDVLCENKKSEEALGLYGRMIEAGCVPSVHTFNMLISMFFEIGEPDGAFE 608
Query: 228 MMKEM 232
EM
Sbjct: 609 TWHEM 613
>gi|225189439|emb|CAR70003.1| pentatricopeptide repeat(PPR)-containing protein At1g12700
[Arabidopsis thaliana]
Length = 602
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
R ++ ++ D+++ K PD T L+ C + ++ + KV + +S V +
Sbjct: 347 NRLSEANNMLDLMVRNKC---SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YSI++ + K A E+ +EMV + G++P + L N ++ KA+E+ E
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMV-SHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
L++ +G Y ++EG + + A + +G P + ++ GL G
Sbjct: 463 DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Query: 327 EWKLATVVRQRFAE 340
A ++ ++ E
Sbjct: 523 SLSEANILLRKMEE 536
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++ G T N LV LC + + A +LK M S E VP++ ++++++
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A E+ KEM+ G+ P + + +A M++ + R C +
Sbjct: 313 KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + K +++RG + +V+G G+ KLA
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Score = 45.4 bits (106), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 47/85 (55%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C++ +L ++ +GY PD T N L++ LC ++ +A ++ M C PD+
Sbjct: 135 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLINGLCLEGKVSKAVVLVDRMVENGCQPDMV 194
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ ++ + + T+ A +M+++M
Sbjct: 195 TYNSIVNGICRSGDTSLAFDMLRKM 219
>gi|222635128|gb|EEE65260.1| hypothetical protein OsJ_20463 [Oryza sativa Japonica Group]
Length = 1443
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 42/73 (57%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++IG PD T LV SL +D++ EA KVL+ M+ A P L ++S +I A + +
Sbjct: 423 EMRAIGCTPDAVTYTVLVDSLGKMDRISEAGKVLEEMADAGLKPTLVTFSALICAYAKSG 482
Query: 221 KTNDAVEMMKEMV 233
+ +DA MV
Sbjct: 483 RQDDAERTFDRMV 495
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Query: 150 CQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES 208
C + VA ++L E++ G PD T N L+S+ L +A V + M ++EC PDL +
Sbjct: 271 CLAAGVALELLHEVRQAGLRPDAITYNTLISACSQGSNLDDAVAVFEEMIASECRPDLWT 330
Query: 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
Y+ ++ K +A M KE+V G P
Sbjct: 331 YNAMVSVHGRCGKAQEAELMFKELV-EKGFQP 361
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 38/168 (22%), Positives = 73/168 (43%), Gaps = 8/168 (4%)
Query: 150 CQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C ++ D+ L EM+ G+ PD N L+ +V + A PD
Sbjct: 898 CHNKRFRDVELMVAEMEGAGFKPDLVVLNTLLLMYTGTGNFDRTIEVYHSILEAGLEPDE 957
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMI 265
++Y+ +I S + + ++ EM GL P+ + I +AA+ +A ++W+ +++
Sbjct: 958 DTYNTLIVMYSRNFRPEEGFTLLYEMG-KRGLTPKLESYKILLAASGKA--KLWEQADLL 1014
Query: 266 -EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
E + KG + Y ++++ R + A + M E G P I
Sbjct: 1015 FEEMRTKGYRLNRSIYHMMMKIYRNARNHSKAEHLLSAMKEDGIEPTI 1062
>gi|15240891|ref|NP_195731.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|75174092|sp|Q9LFC5.1|PP360_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g01110
gi|6759434|emb|CAB69839.1| putative protein [Arabidopsis thaliana]
gi|28973740|gb|AAO64186.1| unknown protein [Arabidopsis thaliana]
gi|110736884|dbj|BAF00399.1| hypothetical protein [Arabidopsis thaliana]
gi|332002917|gb|AED90300.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 729
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 31/208 (14%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ + + ++ EM G PD T L+ C +VE KV M S + VPDL
Sbjct: 317 KHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV 376
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA 254
+S ++ + + + A+ M V GL+P R+GM I VA LR
Sbjct: 377 CFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDNVIYTILIQGYCRKGM-ISVAMNLRN 434
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYI 312
EM++ +GC + Y ++ G C+ +L A K MTER P
Sbjct: 435 --------EMLQ----QGCAMDVVTYNTILHGL--CKRKMLGEADKLFNEMTERALFPDS 480
Query: 313 KVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+++G +G + A + Q+ E
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKE 508
Score = 41.6 bits (96), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 50 IPELLGSFEEACQNPNPFSFL-SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD--YLL 106
+ L +F N + F L + Q +++ E E+F LR + ++ D L
Sbjct: 151 VNSLDSTFSNCGSNDSVFDLLIRTYVQARKLR---EAHEAFTLLRSKGFT-VSIDACNAL 206
Query: 107 SYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165
+L + + LA + Q RSG + V + +++++ L + + + V L +++
Sbjct: 207 IGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA--LCKDGKMEKVGTFLSQVQEK 264
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G +PD T N L+S+ + + EA +++ M P + +Y+ VI + K A
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 226 VEMMKEMVLNMGLMP 240
E+ EM L GL P
Sbjct: 325 KEVFAEM-LRSGLSP 338
>gi|147742776|gb|ABQ50556.1| hypothetical protein [Brassica rapa]
Length = 348
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 93/214 (43%), Gaps = 6/214 (2%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGT 173
L A ++L + L+ G P L++ LE R ++ + D ++EMK P+ T
Sbjct: 132 LGFAFSVLGKILKLGYEPDTVTFSTLVNGLCLEGRVSEAVVIVDRMVEMK---VRPNLVT 188
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N LV+ LC DQ+ EA ++ M C PD +Y ++ + + T A++++++M
Sbjct: 189 LNTLVNGLCLKDQVSEAEALVDRMVEHGCQPDQFTYGPILNRICKSGNTVSALDLLRKME 248
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293
+ + P+ + +L N +A+ + +ER+G Y ++ G +
Sbjct: 249 -DKKVKPQVVTYNMIIDSLCKNGNYDEALSLFNEMEREGIKADVITYNSLIGGFCNAGRW 307
Query: 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ + M R P + +++ G+
Sbjct: 308 DDGAQLLRDMITRNITPNVVTFSALIDCFVKEGK 341
>gi|359497557|ref|XP_003635566.1| PREDICTED: pentatricopeptide repeat-containing protein
At2g17670-like, partial [Vitis vinifera]
Length = 253
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/156 (24%), Positives = 71/156 (45%), Gaps = 4/156 (2%)
Query: 139 LLLSSAWLERRCQSQSV--ADILLE-MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
L+ + ++ C +++ A LLE + G+ PDC N ++ C +D+ EA V K
Sbjct: 20 LVTYTILIDNVCNGKNLREATRLLEVLGEAGFKPDCYVYNTIMKGYCILDKGSEAIGVYK 79
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M PDL +Y+ +I +S + + +A + + +++ MG P + L
Sbjct: 80 KMKEEGVEPDLVTYNTLIFGLSKSGRVKEARKFL-DIMAEMGHFPDAVTYTSLMNGLCRE 138
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
A+ ++E +E KGC Y ++ G + R
Sbjct: 139 GNALGALALLEEMEAKGCSPNSCTYNTLLHGLCKLR 174
>gi|293333002|ref|NP_001168049.1| uncharacterized protein LOC100381779 [Zea mays]
gi|223945693|gb|ACN26930.1| unknown [Zea mays]
gi|414871082|tpg|DAA49639.1| TPA: hypothetical protein ZEAMMB73_603879 [Zea mays]
Length = 582
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 69/140 (49%), Gaps = 9/140 (6%)
Query: 79 IKVIDEM-LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI 137
++V+DE+ LE P ++Y+ L+S + ++ L A IL R G P
Sbjct: 283 LEVLDELDLEGCQP------HVVSYNTLISASCKA-GCLKDAKLILTRLSAEGLEPNGTT 335
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
+L + ++R S+ V D+L MK + PD N ++ C L +A VL+ M
Sbjct: 336 YCILLHSLCDKRRWSE-VGDLLAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVLEMM 394
Query: 198 SSAECVPDLESYSIVIGAMS 217
S +C PD+ +Y+ ++ A+S
Sbjct: 395 VSEKCFPDIVTYNTLLNAIS 414
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 71/167 (42%), Gaps = 6/167 (3%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +L M G PD TCN L+ LC QL A KVL+ M C P
Sbjct: 168 LVRTGNTNKARHVLEVMVLSGGVPDTITCNMLIGQLCCEGQLSSAMKVLEDMRFTGCSPS 227
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+++ +I M + + AV KE L +G P + + + +A+E++
Sbjct: 228 GITFNTLIRCMCSHHLYDRAVSFWKEQ-LKIGWPPYEMTSTLLVDLICKQCGPMRALEVL 286
Query: 266 EFLERKGCPIGFQGYEVVVE-----GCLECREYILAGKTVMGMTERG 307
+ L+ +GC Y ++ GCL+ + IL + G+ G
Sbjct: 287 DELDLEGCQPHVVSYNTLISASCKAGCLKDAKLILTRLSAEGLEPNG 333
Score = 38.9 bits (89), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 38/172 (22%), Positives = 73/172 (42%), Gaps = 10/172 (5%)
Query: 119 ALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTC 174
AL +L GC P V L+S++ C++ + D IL + + G P+ T
Sbjct: 282 ALEVLDELDLEGCQPHVVSYNTLISAS-----CKAGCLKDAKLILTRLSAEGLEPNGTTY 336
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L+ SLC + E +L M A PD+ +Y+I I + A++++ EM++
Sbjct: 337 CILLHSLCDKRRWSEVGDLLAHMKQANHKPDVTAYNIFINYFCRYGHLDQAIDVL-EMMV 395
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ P + A+ + +A+ + + GC + Y +++
Sbjct: 396 SEKCFPDIVTYNTLLNAISKRGMVQEALGIFHSIRENGCQVVRITYNTLIDA 447
>gi|334183972|ref|NP_177860.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
gi|193806398|sp|Q9FVX2.2|PP129_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
At1g77360, mitochondrial; Flags: Precursor
gi|332197848|gb|AEE35969.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
Length = 517
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I++ S C P I +L+ + E R + D LEM+ G D N L
Sbjct: 291 ALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE--AVDTFLEMERSGMKADVAVFNSL 348
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + C +++ +VLK M S P+ +S +I++ + + ++A ++ ++M+
Sbjct: 349 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI--KV 406
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P V +EM A ++ +++ +KG + V++ G E R A
Sbjct: 407 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKAC 466
Query: 298 KTVMGMTERGFIP 310
+ M E G P
Sbjct: 467 VLLEEMIEMGIRP 479
Score = 46.2 bits (108), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 21/269 (7%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
S+R + + + Y+ + +L+ + + + N +F + R + +DE + +F
Sbjct: 133 SVRAYHMMIESTAKIRQYKLMWDLINAMRKK-KMLNVETFCIVMRKYARAQKVDEAIYAF 191
Query: 90 IPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+ P +A++ LLS +S + + A + + +R P + +L W
Sbjct: 192 NVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFE-NMRDRFTPDSKTYSILLEGW-G 248
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ ++ EM G HPD T + +V LC ++ EA +++ M + C P
Sbjct: 249 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 308
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA-------AALRANREMWK 260
YS+++ T + +AV+ E M R GM VA A +ANR M
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFLE-------MERSGMKADVAVFNSLIGAFCKANR-MKN 360
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+++ ++ KG + +++ +E
Sbjct: 361 VYRVLKEMKSKGVTPNSKSCNIILRHLIE 389
>gi|422292736|gb|EKU20038.1| hypothetical protein NGA_2025410 [Nannochloropsis gaditana CCMP526]
gi|422295019|gb|EKU22318.1| hypothetical protein NGA_2025420 [Nannochloropsis gaditana CCMP526]
Length = 527
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/119 (34%), Positives = 58/119 (48%), Gaps = 4/119 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLE-RRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
ALA+L+R SG P RL + W +R + IL M++ G PD T +YL
Sbjct: 175 ALALLRRVFDSGLSP--DARLYNTLLWGHTKRLEWSKAMQILRLMEAKGLVPDRLTYSYL 232
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+S L +QL A + + M V P+LE YS+ + + A T AV + KEM N
Sbjct: 233 LSCLVDCNQLEVAQSLWREMRDKGHVKPNLELYSLAVDMFAKAGDTTQAVTIFKEMRRN 291
>gi|414865374|tpg|DAA43931.1| TPA: hypothetical protein ZEAMMB73_168023 [Zea mays]
Length = 793
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 83/182 (45%), Gaps = 10/182 (5%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L MK G P T N LVS+ + + +A V++ M++ PDL +Y+++ +
Sbjct: 266 LLARMKKEGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAGLC 325
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGCPI 275
A K ++A ++ EM +G++ + V A + R A+ ++E + KG
Sbjct: 326 QAGKVDEAFKLKDEME-QLGIVSPDVVTYNTLVDACFKCQRSS-DALNLLEEMREKGVKS 383
Query: 276 GFQGYEVVVEGCLECREYILA---GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
+ ++V+G CRE L G+ M MTE G P + +++ G A
Sbjct: 384 SLVTHNIIVKGL--CREGQLEEALGRLEM-MTEEGLTPDVITYNTLIDASCKAGNVAKAF 440
Query: 333 VV 334
V+
Sbjct: 441 VL 442
Score = 42.4 bits (98), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 149 RCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+CQ S A ++L EM+ G T N +V LC QL EA L+ M+ PD+
Sbjct: 362 KCQRSSDALNLLEEMREKGVKSSLVTHNIIVKGLCREGQLEEALGRLEMMTEEGLTPDVI 421
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMV 233
+Y+ +I A A A +M EMV
Sbjct: 422 TYNTLIDASCKAGNVAKAFVLMDEMV 447
Score = 38.1 bits (87), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 12/227 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL---EMKSIGYHPDCGTCN 175
AL L+ G P ++ + ++ C++ +VA + EM G D T N
Sbjct: 404 ALGRLEMMTEEGLTP----DVITYNTLIDASCKAGNVAKAFVLMDEMVRSGLKMDTFTLN 459
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ +LC + EA ++L+ VPD SY V+ A K A+ + EM+
Sbjct: 460 TLLYNLCKEKRYEEAEELLRAPPQRGFVPDEVSYGTVMAAYFKEYKPEPALCLWDEMI-K 518
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L P + L ++ +A++ + L G Y +++ C+E L
Sbjct: 519 RKLTPSISTYNTLIKGLSTMGKLTEAIDKLNELMEMGLVPDDTTYNIIIHAY--CKEGDL 576
Query: 296 --AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
A + M E F P + ++ GL G + A + + + E
Sbjct: 577 EKAFQFHNKMVENSFKPDVVTCNTLMNGLCLYGRLEKAMKLFESWVE 623
Score = 38.1 bits (87), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 37/171 (21%), Positives = 68/171 (39%), Gaps = 3/171 (1%)
Query: 118 LALAILQRTLRSGCV--PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
LA +L R GCV + +LS+ Q+ D + ++ HP+ T N
Sbjct: 154 LAAQLLHSFRRRGCVRPSLQAANAVLSALARSPSTSPQASLDAFHSLIALRLHPNHYTFN 213
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV + C+ L +A L M PD +Y+ ++ A +A ++ M
Sbjct: 214 LLVHTHCSKGTLADALSTLSKMQGFGLSPDAVTYNTLLNAHCRKGMLGEARTLLARMK-K 272
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
G++P + + +A + +A +++E + G Y V+ G
Sbjct: 273 EGIVPTRATYNTLVSAYARLGWIKQATDVVEAMTAFGFEPDLWTYNVLAAG 323
>gi|413948659|gb|AFW81308.1| hypothetical protein ZEAMMB73_549819 [Zea mays]
Length = 795
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 90/225 (40%), Gaps = 39/225 (17%)
Query: 143 SAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
++ ++ C++Q++ IL M G PD T N ++ C++ QL EA ++LK MS
Sbjct: 239 NSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLGQLEEAVRLLKKMSG 298
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+ PD+ +YS++I + +A + MV G P + + +
Sbjct: 299 SGLQPDVVTYSLLIQYYCKIGRCAEARSVFDSMV-RKGQKPNSTIYHILLHGYATKGALI 357
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVV-----EGCLE-------------CREYILAGKTVM 301
++++ + R G P + + +++ G ++ R +++ TV+
Sbjct: 358 DVRDLLDLMIRDGIPFEHRAFNILICAYAKHGAVDKAMTAFTEMRQNGLRPDVVSYSTVI 417
Query: 302 G-----------------MTERGFIPYIKVRQKVVEGLAGVGEWK 329
M G P I ++ GL +GEWK
Sbjct: 418 HILCKTGRVEDAVYHFNQMVSEGLSPNIISFTSLIHGLCSIGEWK 462
Score = 48.9 bits (115), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 73/170 (42%), Gaps = 1/170 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V ++ EM + G HPD N ++ +LC ++VEA + PD+ SY+ +
Sbjct: 462 KKVEELAFEMINRGIHPDAIFMNTIMDNLCKEGRVVEAQDFFDMVIHIGVKPDVVSYNTL 521
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I K +++++ + MV ++GL P + N + A+ + + RK
Sbjct: 522 IDGYCFVGKMDESIKQLDRMV-SIGLRPDSWTYNSLLNGYFKNGRVEDALALYREMFRKD 580
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+++ G + + A + M M +RG I+ V+ GL
Sbjct: 581 VKFCAITSNIMLHGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGL 630
Score = 45.4 bits (106), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLESYSIVIG 214
+ M +GY PD + N L+ LC + EA ++L M++ C P++ SY+ VI
Sbjct: 149 VFRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVID 208
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + A + EM + GL P + L + M KAV +++ + KG
Sbjct: 209 GFFKEGEVDKAYFLFHEM-MGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVM 267
Query: 275 IGFQGYEVVVEG 286
+ Y +++ G
Sbjct: 268 PDTRTYNIMIRG 279
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G PD T N L+ LC + +A +L+ M +PD +Y+I+I +
Sbjct: 225 EMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPDTRTYNIMIRGYCSLG 284
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+ +AV ++K+M GL P
Sbjct: 285 QLEEAVRLLKKMS-GSGLQP 303
Score = 42.0 bits (97), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 110/260 (42%), Gaps = 12/260 (4%)
Query: 83 DEMLESFIPLRPRSRPKI--AYDYLLSYTLQS------LHPLPLALAILQRTLRSGCVPV 134
++ L F L P++RP A++ +L+ ++ H LA+++ +RSG +
Sbjct: 31 EDALNLFDELLPQARPASVHAFNSVLTVVARADSSSSPRHSAALAVSLFNTMVRSGVNMM 90
Query: 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK-V 193
I +L + + A L +K+ G+ T N L+ LC ++ +A V
Sbjct: 91 AAIIGILIRCFCTVGRLDLAFAAFALFLKT-GWRVQNVTLNQLIKGLCDGNRTDDAMDMV 149
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL--MPRQGMVIKVAAA 251
+ M PD+ SY+ +I + +K+ +A+E++ M + G P V
Sbjct: 150 FRRMPELGYTPDVFSYNALIKGLCVEKKSQEALELLIHMTADGGYNCSPNVVSYNTVIDG 209
Query: 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311
E+ KA + + +G P Y +++G + + A + M ++G +P
Sbjct: 210 FFKEGEVDKAYFLFHEMMGQGLPPDVVTYNSLIDGLCKAQAMDKAVAILQHMFDKGVMPD 269
Query: 312 IKVRQKVVEGLAGVGEWKLA 331
+ ++ G +G+ + A
Sbjct: 270 TRTYNIMIRGYCSLGQLEEA 289
Score = 38.9 bits (89), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 105/239 (43%), Gaps = 20/239 (8%)
Query: 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG---CV 132
+ IK +D M+ I LRP S Y+ LL+ ++ + ALA+ + R C
Sbjct: 532 DESIKQLDRMVS--IGLRPDS---WTYNSLLNGYFKN-GRVEDALALYREMFRKDVKFCA 585
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
I L L + + + ++ ++M G T N ++ LC + EA +
Sbjct: 586 ITSNIML----HGLFQAGRIVAARELYMKMVDRGTQLRIETYNTVLGGLCENSCVDEALR 641
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+ + + S E D+ ++SIVI A+ + ++A + MVL G +P VI + +
Sbjct: 642 MFEDLRSKEFELDVRTFSIVINALLKVGRIDEAKSLFSAMVLR-GPVPD---VITYSLMI 697
Query: 253 RANRE---MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308
+++ E + ++ + +E+ GC ++V LE + AG + + E+ F
Sbjct: 698 KSHIEEGLLEESDNLFLSMEKNGCAADSHMLNIIVRRLLEKGDVRRAGTYLTKIDEKNF 756
>gi|255661038|gb|ACU25688.1| pentatricopeptide repeat-containing protein [Petrea racemosa]
Length = 375
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/155 (23%), Positives = 69/155 (44%), Gaps = 2/155 (1%)
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236
+++ LC +L EA VL GM C P+ Y+ +I A K DA + +EM +
Sbjct: 135 MINGLCKEAKLDEAVSVLSGMVKNGCKPNTHVYNALINGFVGASKFEDATRVFREMGTHC 194
Query: 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILA 296
P + L +A ++++ + KG G Y ++++G + +A
Sbjct: 195 S--PNIVTYNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMA 252
Query: 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+ +GF P +++ ++ GL VG+ +LA
Sbjct: 253 INLWNQVIAKGFKPDVQMHNILIHGLCSVGKTQLA 287
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 57/120 (47%), Gaps = 6/120 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGT 173
L A+++L +++GC P + L + ++ + D + +G H P+ T
Sbjct: 145 LDEAVSVLSGMVKNGCKPNTHVYNALINGFV----GASKFEDATRVFREMGTHCSPNIVT 200
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
N L++ LC ++ EA ++K M P + +YS+++ + K + A+ + +++
Sbjct: 201 YNTLINGLCKGERFGEAYDLVKEMLEKGWKPGVSTYSLLMKGLCLGHKLDMAINLWNQVI 260
>gi|410109949|gb|AFV61054.1| pentatricopeptide repeat-containing protein 11, partial [Lippia
turbinata]
Length = 413
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/174 (24%), Positives = 77/174 (44%), Gaps = 8/174 (4%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCG 172
+ LA+ I +R L +P L+ + + C++ + D++ EM G PD
Sbjct: 245 VDLAMEIYKRMLSQSLLP----DLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKF 300
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ C L A K K M D +Y+ +I + ++ DA +M++EM
Sbjct: 301 TYTTLIDGCCKEGDLDTAFKHRKRMIQENIRLDDVAYTALISGLCQEGQSVDAEKMLREM 360
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
L++GL P G + ++WK ++++ ++R G Y V++ G
Sbjct: 361 -LSVGLKPDIGTYTMIINEFCKKGDVWKGSKLLKEMQRNGHAPSVVTYNVLMNG 413
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 39/189 (20%), Positives = 79/189 (41%), Gaps = 4/189 (2%)
Query: 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211
+QSV D + + G P + N L++ + L E ++ M + PD+ +YS+
Sbjct: 143 AQSVFDAITKW---GLRPSVVSYNTLMNGYIRLGDLDEGFRLKSAMLANGVQPDVYTYSV 199
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
+I + K +DA E+ EM++ GL+P + N + A+E+ + + +
Sbjct: 200 LINGLCKESKMDDANELFDEMLVK-GLIPNGVTFTTLIDGHCKNGRVDLAMEIYKRMLSQ 258
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + + A + M+ +G P +++G G+ A
Sbjct: 259 SLLPDLITYNTLIYGLCKNGDLKQAHDLIDEMSMKGLKPDKFTYTTLIDGCCKEGDLDTA 318
Query: 332 TVVRQRFAE 340
R+R +
Sbjct: 319 FKHRKRMIQ 327
>gi|357499719|ref|XP_003620148.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|217074978|gb|ACJ85849.1| unknown [Medicago truncatula]
gi|355495163|gb|AES76366.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
Length = 465
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/154 (22%), Positives = 73/154 (47%), Gaps = 4/154 (2%)
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
Q +++ S ++ C+ + V D + EM S G P+ T + L+S + +L +A
Sbjct: 224 QPNVVMYSTIIDGMCKDKHVNDAFDLYSEMVSKGISPNVVTYSALISGFFTVGKLKDAVD 283
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+ M S PD+ +++I++ + K + A++++ EM + G P + AL
Sbjct: 284 LFNKMISENIKPDVYTFNILVDVFCKSGKISYALKLVDEM-HDRGQPPNIVTYSSILDAL 342
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+ KAV ++ L+ +G Y ++++G
Sbjct: 343 CKTHRVDKAVALLTKLKDQGIRPNMHTYTILIDG 376
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 39/207 (18%), Positives = 85/207 (41%), Gaps = 2/207 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+P A ++ + L+ G P I L + Q + ++ ++G+ + +
Sbjct: 138 IPFAFSVFAKILKMGYNP-NTITFTTLIKGLCLKGQIHQALNFHDKLVALGFQFNQISYG 196
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
L+ LC + + A +L+ + P++ YS +I M + NDA ++ EMV +
Sbjct: 197 TLIDGLCKVGETRAALDLLRRVDGKLVQPNVVMYSTIIDGMCKDKHVNDAFDLYSEMV-S 255
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G+ P + + ++ AV++ + + + ++V+ + +
Sbjct: 256 KGISPNVVTYSALISGFFTVGKLKDAVDLFNKMISENIKPDVYTFNILVDVFCKSGKISY 315
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A K V M +RG P I +++ L
Sbjct: 316 ALKLVDEMHDRGQPPNIVTYSSILDAL 342
>gi|11079489|gb|AAG29201.1|AC078898_11 hypothetical protein [Arabidopsis thaliana]
Length = 481
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I++ S C P I +L+ + E R + D LEM+ G D N L
Sbjct: 255 ALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE--AVDTFLEMERSGMKADVAVFNSL 312
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + C +++ +VLK M S P+ +S +I++ + + ++A ++ ++M+
Sbjct: 313 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI--KV 370
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P V +EM A ++ +++ +KG + V++ G E R A
Sbjct: 371 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKAC 430
Query: 298 KTVMGMTERGFIP 310
+ M E G P
Sbjct: 431 VLLEEMIEMGIRP 443
Score = 46.2 bits (108), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 21/269 (7%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
S+R + + + Y+ + +L+ + + + N +F + R + +DE + +F
Sbjct: 97 SVRAYHMMIESTAKIRQYKLMWDLINAMRKK-KMLNVETFCIVMRKYARAQKVDEAIYAF 155
Query: 90 IPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+ P +A++ LLS +S + + A + + +R P + +L W
Sbjct: 156 NVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFE-NMRDRFTPDSKTYSILLEGW-G 212
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ ++ EM G HPD T + +V LC ++ EA +++ M + C P
Sbjct: 213 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 272
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA-------AALRANREMWK 260
YS+++ T + +AV+ E M R GM VA A +ANR M
Sbjct: 273 IYSVLVHTYGTENRLEEAVDTFLE-------MERSGMKADVAVFNSLIGAFCKANR-MKN 324
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+++ ++ KG + +++ +E
Sbjct: 325 VYRVLKEMKSKGVTPNSKSCNIILRHLIE 353
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.323 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,729,393,668
Number of Sequences: 23463169
Number of extensions: 177330268
Number of successful extensions: 461662
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2168
Number of HSP's successfully gapped in prelim test: 1195
Number of HSP's that attempted gapping in prelim test: 437369
Number of HSP's gapped (non-prelim): 18667
length of query: 343
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 200
effective length of database: 9,003,962,200
effective search space: 1800792440000
effective search space used: 1800792440000
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 77 (34.3 bits)