BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046547
(343 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4E0J|A Chain A, Protelomerase Tela R255a Mutant Complexed With Dna Hairpin
Product
Length = 462
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 210 MLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 269
Query: 302 GMTERGFIPY 311
GMT R PY
Sbjct: 270 GMTGRA--PY 277
>pdb|4F41|A Chain A, Protelomerase Tela Mutant R255a Complexed With Cttg
Hairpin Dna
pdb|4F43|A Chain A, Protelomerase Tela Mutant R255a Complexed With Caag
Hairpin Dna
Length = 320
Score = 30.0 bits (66), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 89 MLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 148
Query: 302 GMTERGFIPY 311
GMT R PY
Sbjct: 149 GMTGRA--PY 156
>pdb|4E10|A Chain A, Protelomerase Tela Y201a Covalently Complexed With
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 210 MLKIATGDAAMADEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 269
Query: 302 GMTER 306
GMT R
Sbjct: 270 GMTGR 274
>pdb|4E0G|A Chain A, Protelomerase Tela/dna Hairpin Product/vanadate Complex
Length = 462
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 210 MLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 269
Query: 302 GMTER 306
GMT R
Sbjct: 270 GMTGR 274
>pdb|4E0P|A Chain A, Protelomerase Tela Covalently Complexed With Substrate Dna
pdb|4E0Y|A Chain A, Protelomerase Tela Covalently Complexed With Mutated
Substrate Dna
Length = 462
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 34/65 (52%), Gaps = 3/65 (4%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 210 MLKIATGDAAMYDEARRVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 269
Query: 302 GMTER 306
GMT R
Sbjct: 270 GMTGR 274
>pdb|1FT0|A Chain A, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
pdb|1FT0|B Chain B, Crystal Structure Of Truncated Human Rhogdi K113a Mutant
Length = 139
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/42 (30%), Positives = 23/42 (54%)
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282
++G+ ++A + R NRE+ ++ I+ RKG I Y V
Sbjct: 40 KEGVEYRIAISFRVNREIVSGMKYIQHTYRKGVKIDKTDYMV 81
>pdb|4E0Z|A Chain A, Protelomerase Tela R205a Covalently Complexed With
Substrate Dna
Length = 462
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECREYILAGKTVM 301
++K+A A + V+M + + G I F+ Y V+ E CL+ + ++ G ++
Sbjct: 210 MLKIATGDAAMYDEAARVKMEKIANKHGALITFENYRQVLKICEDCLKSSDPLMIGIGLI 269
Query: 302 GMTER 306
GMT R
Sbjct: 270 GMTGR 274
>pdb|1ZT2|A Chain A, Heterodimeric Structure Of The Core Primase.
pdb|1ZT2|C Chain C, Heterodimeric Structure Of The Core Primase
Length = 330
Score = 27.7 bits (60), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 46/101 (45%), Gaps = 16/101 (15%)
Query: 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM 162
DYL++ L PL L + S +P R + AW+ AD L ++
Sbjct: 62 DYLVNRNL----PLHLFYS-------SARYQLPSARNMEEKAWMGSDLLFDIDADHLCKL 110
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
+SI + P CG N +VS C D VE + ++ ++EC+
Sbjct: 111 RSIRFCPVCG--NAVVSEKCERDN-VETLEYVE--MTSECI 146
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.136 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,550,537
Number of Sequences: 62578
Number of extensions: 308048
Number of successful extensions: 705
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 703
Number of HSP's gapped (non-prelim): 10
length of query: 343
length of database: 14,973,337
effective HSP length: 100
effective length of query: 243
effective length of database: 8,715,537
effective search space: 2117875491
effective search space used: 2117875491
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 52 (24.6 bits)