BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 046547
(343 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9LNC0|PPR16_ARATH Pentatricopeptide repeat-containing protein At1g06270
OS=Arabidopsis thaliana GN=At1g06270 PE=2 SV=1
Length = 343
Score = 431 bits (1107), Expect = e-120, Method: Compositional matrix adjust.
Identities = 211/330 (63%), Positives = 259/330 (78%), Gaps = 3/330 (0%)
Query: 14 NFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNF 73
+F C+ F RS+SS +E+ ++ AV+ K+Y +IPEL+ S +E QN FSFLS F
Sbjct: 17 SFDVCIPFF---RSISSFEAVEKAIKCAVETKEYLRIPELVVSLKEPYQNSTLFSFLSAF 73
Query: 74 PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP 133
++HRI+VIDE+L+SF+P+RPRS PKI Y LL+Y LQS PLPL+ AILQRTLRSGC+P
Sbjct: 74 QRHHRIRVIDEILQSFVPVRPRSLPKIVYSSLLTYCLQSSDPLPLSFAILQRTLRSGCLP 133
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
PQ LLLS AWLERR SQSVADI+ EMK IGY PD GTCNYLVSSLCA+D+L EA KV
Sbjct: 134 NPQTHLLLSDAWLERRRGSQSVADIINEMKLIGYSPDTGTCNYLVSSLCAVDKLDEAIKV 193
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
++ MS+A C+PD+ESY VI ++ ARKT D V+++KEMV G+ PR+GM+ KVAAALR
Sbjct: 194 VEEMSAAGCIPDVESYGAVINSLCLARKTTDVVKIVKEMVSKAGISPRKGMLTKVAAALR 253
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
ANRE+WKA+EMIEF+E + P+ F+ YEVVVEGCLE REYILAGK VM MT+RGFIPYIK
Sbjct: 254 ANREIWKAIEMIEFVESRDYPVEFESYEVVVEGCLEVREYILAGKVVMRMTDRGFIPYIK 313
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
VRQKVVE L +GEWKLA VRQR +EL+S
Sbjct: 314 VRQKVVERLINIGEWKLACTVRQRVSELRS 343
>sp|Q9SZ52|PP344_ARATH Pentatricopeptide repeat-containing protein At4g31850,
chloroplastic OS=Arabidopsis thaliana GN=PGR3 PE=1 SV=1
Length = 1112
Score = 68.2 bits (165), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 64/267 (23%), Positives = 115/267 (43%), Gaps = 7/267 (2%)
Query: 78 RIKVIDEMLESFIPLRPRSRPKIAYDYL--LSYTLQSLHPLPLALAILQRTLRSGCVPVP 135
R+ +D+ LE F + AY Y+ + Y +S + AL ++ G P
Sbjct: 410 RVHRLDDALELFGNMESLGVKPTAYTYIVFIDYYGKSGDSVS-ALETFEKMKTKGIAP-- 466
Query: 136 QIRLLLSSAW-LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
I +S + L + + + I +K IG PD T N ++ + ++ EA K+L
Sbjct: 467 NIVACNASLYSLAKAGRDREAKQIFYGLKDIGLVPDSVTYNMMMKCYSKVGEIDEAIKLL 526
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M C PD+ + +I + A + ++A +M M M L P + A L
Sbjct: 527 SEMMENGCEPDVIVVNSLINTLYKADRVDEAWKMFMRMK-EMKLKPTVVTYNTLLAGLGK 585
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
N ++ +A+E+ E + +KGCP + + + + E LA K + M + G +P +
Sbjct: 586 NGKIQEAIELFEGMVQKGCPPNTITFNTLFDCLCKNDEVTLALKMLFKMMDMGCVPDVFT 645
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K A + +L
Sbjct: 646 YNTIIFGLVKNGQVKEAMCFFHQMKKL 672
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/204 (24%), Positives = 94/204 (46%), Gaps = 2/204 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + +R + G P Q L +RR SV +L EM+++G P+ T +
Sbjct: 207 AMEVYRRMILEGFRPSLQTYSSLMVGLGKRR-DIDSVMGLLKEMETLGLKPNVYTFTICI 265
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
L ++ EA ++LK M C PD+ +Y+++I A+ TARK + A E+ ++M
Sbjct: 266 RVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGRH- 324
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + I + NR++ + +E+ G + ++V+ + + A
Sbjct: 325 KPDRVTYITLLDRFSDNRDLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEAFD 384
Query: 299 TVMGMTERGFIPYIKVRQKVVEGL 322
T+ M ++G +P + ++ GL
Sbjct: 385 TLDVMRDQGILPNLHTYNTLICGL 408
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 80/170 (47%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ L++KS G PD T N+L+ + ++ E ++ K MS+ EC + +++IVI +
Sbjct: 806 DVFLQVKSTGCIPDVATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGL 865
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
A +DA+++ +++ + P + L + +++A ++ E + GC
Sbjct: 866 VKAGNVDDALDLYYDLMSDRDFSPTACTYGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPN 925
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y +++ G + E A M + G P +K +V+ L VG
Sbjct: 926 CAIYNILINGFGKAGEADAACALFKRMVKEGVRPDLKTYSVLVDCLCMVG 975
Score = 48.5 bits (114), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 60/262 (22%), Positives = 97/262 (37%), Gaps = 15/262 (5%)
Query: 12 LVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLS 71
L FRP L +SSL R +D + LL E PN ++F
Sbjct: 216 LEGFRPSLQTYSSLMVGLGKR------------RDIDSVMGLLKEMETLGLKPNVYTFTI 263
Query: 72 NFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
R I+E E + P + +L L + L A + ++
Sbjct: 264 CIRVLGRAGKINEAYEILKRMDDEGCGPDVVTYTVLIDALCTARKLDCAKEVFEKMKTGR 323
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
P + L + + R SV EM+ G+ PD T LV +LC EA
Sbjct: 324 HKPDRVTYITLLDRFSDNR-DLDSVKQFWSEMEKDGHVPDVVTFTILVDALCKAGNFGEA 382
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
L M +P+L +Y+ +I + + +DA+E+ M ++G+ P I
Sbjct: 383 FDTLDVMRDQGILPNLHTYNTLICGLLRVHRLDDALELFGNME-SLGVKPTAYTYIVFID 441
Query: 251 ALRANREMWKAVEMIEFLERKG 272
+ + A+E E ++ KG
Sbjct: 442 YYGKSGDSVSALETFEKMKTKG 463
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/122 (22%), Positives = 55/122 (45%), Gaps = 1/122 (0%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A + + L GC P I +L + + + ++ + + M G PD T + LV
Sbjct: 910 AKQLFEGMLDYGCRPNCAIYNILINGF-GKAGEADAACALFKRMVKEGVRPDLKTYSVLV 968
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ E K + + PD+ Y+++I + + + +A+ + EM + G+
Sbjct: 969 DCLCMVGRVDEGLHYFKELKESGLNPDVVCYNLIINGLGKSHRLEEALVLFNEMKTSRGI 1028
Query: 239 MP 240
P
Sbjct: 1029 TP 1030
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 81/194 (41%), Gaps = 8/194 (4%)
Query: 150 CQSQSV--ADILLE--MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ +V A L E K +G P T N L+ L D + A V + S C+PD
Sbjct: 760 CKHNNVSGARTLFEKFTKDLGVQPKLPTYNLLIGGLLEADMIEIAQDVFLQVKSTGCIPD 819
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ ++ A + K ++ E+ KEM + I ++ ++A + A+++
Sbjct: 820 VATYNFLLDAYGKSGKIDELFELYKEMSTHECEANTITHNIVISGLVKAGN-VDDALDLY 878
Query: 266 EFL--ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
L +R P Y +++G + A + GM + G P + ++ G
Sbjct: 879 YDLMSDRDFSPTACT-YGPLIDGLSKSGRLYEAKQLFEGMLDYGCRPNCAIYNILINGFG 937
Query: 324 GVGEWKLATVVRQR 337
GE A + +R
Sbjct: 938 KAGEADAACALFKR 951
Score = 32.0 bits (71), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 60/134 (44%), Gaps = 1/134 (0%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L +M+ G+ + + N L+ L EA +V + M P L++YS ++ +
Sbjct: 176 LRKMREFGFVLNAYSYNGLIHLLLKSRFCTEAMEVYRRMILEGFRPSLQTYSSLMVGLGK 235
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
R + + ++KEM +GL P L ++ +A E+++ ++ +GC
Sbjct: 236 RRDIDSVMGLLKEME-TLGLKPNVYTFTICIRVLGRAGKINEAYEILKRMDDEGCGPDVV 294
Query: 279 GYEVVVEGCLECRE 292
Y V+++ R+
Sbjct: 295 TYTVLIDALCTARK 308
>sp|Q9SSR6|PPR78_ARATH Pentatricopeptide repeat-containing protein At1g52640,
mitochondrial OS=Arabidopsis thaliana GN=At1g52640 PE=2
SV=1
Length = 523
Score = 65.1 bits (157), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 91/207 (43%), Gaps = 8/207 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A + L CV + LL +A L+ C+S V + EM ++G PD +
Sbjct: 227 ARKVFDEMLERNCV----VDLLAYNALLDALCKSGDVDGGYKMFQEMGNLGLKPDAYSFA 282
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+ + C + A KVL M + VP++ +++ +I + K +DA ++ EM+
Sbjct: 283 IFIHAYCDAGDVHSAYKVLDRMKRYDLVPNVYTFNHIIKTLCKNEKVDDAYLLLDEMI-Q 341
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
G P + A + E+ +A +++ ++R C Y +V++ + +
Sbjct: 342 KGANPDTWTYNSIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDR 401
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGL 322
A + GM+ER F P + ++ GL
Sbjct: 402 ATEIWEGMSERKFYPTVATYTVMIHGL 428
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/159 (22%), Positives = 70/159 (44%), Gaps = 7/159 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCN 175
A +L R R VP + + ++ C+++ V D +L EM G +PD T N
Sbjct: 297 AYKVLDRMKRYDLVP----NVYTFNHIIKTLCKNEKVDDAYLLLDEMIQKGANPDTWTYN 352
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+++ C ++ A K+L M +C+PD +Y++V+ + + + A E+ + M
Sbjct: 353 SIMAYHCDHCEVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSER 412
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + +R ++ +A E + +G P
Sbjct: 413 KFYPTVATYTVMIHGLVRKKGKLEEACRYFEMMIDEGIP 451
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222
K G P T + LV I A KV M CV DL +Y+ ++ A+ +
Sbjct: 200 KGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGDV 259
Query: 223 NDAVEMMKEMVLNMGLMP 240
+ +M +EM N+GL P
Sbjct: 260 DGGYKMFQEMG-NLGLKP 276
>sp|Q3EDF8|PPR28_ARATH Pentatricopeptide repeat-containing protein At1g09900
OS=Arabidopsis thaliana GN=At1g09900 PE=2 SV=1
Length = 598
Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 57/243 (23%), Positives = 112/243 (46%), Gaps = 9/243 (3%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD-- 157
+ Y+ +L +L L A+ +L R L+ C P ++ + +E C+ V
Sbjct: 205 VTYNTILR-SLCDSGKLKQAMEVLDRMLQRDCYP----DVITYTILIEATCRDSGVGHAM 259
Query: 158 -ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ G PD T N LV+ +C +L EA K L M S+ C P++ +++I++ +M
Sbjct: 260 KLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSM 319
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
+ + DA +++ +M L G P + L + +A++++E + + GC
Sbjct: 320 CSTGRWMDAEKLLADM-LRKGFSPSVVTFNILINFLCRKGLLGRAIDILEKMPQHGCQPN 378
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y ++ G + ++ A + + M RG P I ++ L G+ + A +
Sbjct: 379 SLSYNPLLHGFCKEKKMDRAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILN 438
Query: 337 RFA 339
+ +
Sbjct: 439 QLS 441
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 100/216 (46%), Gaps = 2/216 (0%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
L A+ IL++ + GC P L + + + +++ + L M S G +PD T N
Sbjct: 360 LGRAIDILEKMPQHGCQPNSLSYNPLLHGFCKEKKMDRAI-EYLERMVSRGCYPDIVTYN 418
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++++LC ++ +A ++L +SS C P L +Y+ VI ++ A KT A++++ EM
Sbjct: 419 TMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVIDGLAKAGKTGKAIKLLDEMRAK 478
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
L P + L ++ +A++ ER G + ++ G + R+
Sbjct: 479 -DLKPDTITYSSLVGGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDR 537
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
A ++ M RG P ++EGLA G K A
Sbjct: 538 AIDFLVFMINRGCKPNETSYTILIEGLAYEGMAKEA 573
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 85/194 (43%), Gaps = 5/194 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A IL+ SG VP ++ + + C++ + + L + + PD T N ++
Sbjct: 156 AAKILEILEGSGAVP----DVITYNVMISGYCKAGEINNALSVLDRMSVSPDVVTYNTIL 211
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
SLC +L +A +VL M +C PD+ +Y+I+I A A++++ EM + G
Sbjct: 212 RSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCRDSGVGHAMKLLDEM-RDRGC 270
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + + + +A++ + + GC + +++ ++ A K
Sbjct: 271 TPDVVTYNVLVNGICKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEK 330
Query: 299 TVMGMTERGFIPYI 312
+ M +GF P +
Sbjct: 331 LLADMLRKGFSPSV 344
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 47/199 (23%), Positives = 90/199 (45%), Gaps = 13/199 (6%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R +++ A IL ++ G PD T N ++S C ++ A VL MS + PD+
Sbjct: 149 RLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCKAGEINNALSVLDRMSVS---PDVV 205
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ ++ ++ + K A+E++ M+ I + A R + + A+++++
Sbjct: 206 TYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVITYTILIEATCR-DSGVGHAMKLLDE 264
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ +GC Y V+V G C+E L A K + M G P + ++ +
Sbjct: 265 MRDRGCTPDVVTYNVLVNGI--CKEGRLDEAIKFLNDMPSSGCQPNVITHNIILRSMCST 322
Query: 326 GEWK-----LATVVRQRFA 339
G W LA ++R+ F+
Sbjct: 323 GRWMDAEKLLADMLRKGFS 341
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 86/175 (49%), Gaps = 11/175 (6%)
Query: 162 MKSIGYH---PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
++++ YH PD C L+ C + + +AAK+L+ + + VPD+ +Y+++I
Sbjct: 125 LENMVYHGNVPDIIPCTTLIRGFCRLGKTRKAAKILEILEGSGAVPDVITYNVMISGYCK 184
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278
A + N+A+ ++ M ++ P + +L + ++ +A+E+++ + ++ C
Sbjct: 185 AGEINNALSVLDRMSVS----PDVVTYNTILRSLCDSGKLKQAMEVLDRMLQRDCYPDVI 240
Query: 279 GYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++E CR+ + A K + M +RG P + +V G+ G A
Sbjct: 241 TYTILIEA--TCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLDEA 293
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Query: 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L R + E + +G P+ T N ++ LC Q A L M + C
Sbjct: 492 GGLSREGKVDEAIKFFHEFERMGIRPNAVTFNSIMLGLCKSRQTDRAIDFLVFMINRGCK 551
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
P+ SY+I+I ++ +A+E++ E+ N GLM +
Sbjct: 552 PNETSYTILIEGLAYEGMAKEALELLNELC-NKGLMKK 588
>sp|P0C8R0|PP416_ARATH Putative pentatricopeptide repeat-containing protein At5g43820
OS=Arabidopsis thaliana GN=At5g43820 PE=3 SV=1
Length = 546
Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 90/191 (47%), Gaps = 1/191 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + +I +K G PD N ++ + + E+ + + M EC P+
Sbjct: 300 LGRTGRINDSVEIFDNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPN 359
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
LE+YS ++ + RK +DA+E+ +EM L+ G++P G+V L + A+ +
Sbjct: 360 LETYSKLVSGLIKGRKVSDALEIFEEM-LSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIY 418
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
+ + GC I Y+++++ + + M E G+ ++V + +V+GL +
Sbjct: 419 QKSRKAGCRISESAYKLLLKRLSRFGKCGMLLNVWDEMQESGYPSDVEVYEYIVDGLCII 478
Query: 326 GEWKLATVVRQ 336
G + A +V +
Sbjct: 479 GHLENAVLVME 489
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/168 (22%), Positives = 74/168 (44%), Gaps = 1/168 (0%)
Query: 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
D + N ++S + ++ E KVLK M + PD SYS +I + + ND+VE+
Sbjct: 254 DSCSYNIMISGWSKLGEVEEMEKVLKEMVESGFGPDCLSYSHLIEGLGRTGRINDSVEIF 313
Query: 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+ + + G +P + + + R+ +++ + + C + Y +V G ++
Sbjct: 314 -DNIKHKGNVPDANVYNAMICNFISARDFDESMRYYRRMLDEECEPNLETYSKLVSGLIK 372
Query: 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
R+ A + M RG +P + ++ L G A V+ Q+
Sbjct: 373 GRKVSDALEIFEEMLSRGVLPTTGLVTSFLKPLCSYGPPHAAMVIYQK 420
Score = 38.5 bits (88), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 62/153 (40%), Gaps = 17/153 (11%)
Query: 110 LQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH 168
L S P A+ I Q++ ++GC + +LLL L R + + ++ EM+ GY
Sbjct: 405 LCSYGPPHAAMVIYQKSRKAGCRISESAYKLLLKR--LSRFGKCGMLLNVWDEMQESGYP 462
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
D Y+V LC I L A V++ P+ YS + + + KT A ++
Sbjct: 463 SDVEVYEYIVDGLCIIGHLENAVLVMEEAMRKGFCPNRFVYSRLSSKLMASNKTELAYKL 522
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
+ IK A A R W++
Sbjct: 523 F--------------LKIKKARATENARSFWRS 541
>sp|Q9FFE3|PP388_ARATH Pentatricopeptide repeat-containing protein At5g16420,
mitochondrial OS=Arabidopsis thaliana GN=At5g16420 PE=2
SV=1
Length = 535
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 64/265 (24%), Positives = 108/265 (40%), Gaps = 14/265 (5%)
Query: 68 SFLSNFPQNHRIKVIDEML----ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
+ L+ QN R ++ M ESF P I LL L + + A +L
Sbjct: 160 TLLNVLIQNQRFDLVHAMFKNSKESF-----GITPNIFTCNLLVKALCKKNDIESAYKVL 214
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183
G VP + ++ R +S +L EM G++PD T L+ C
Sbjct: 215 DEIPSMGLVPNLVTYTTILGGYVAR-GDMESAKRVLEEMLDRGWYPDATTYTVLMDGYCK 273
Query: 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243
+ + EAA V+ M E P+ +Y ++I A+ +K+ +A M EM L MP
Sbjct: 274 LGRFSEAATVMDDMEKNEIEPNEVTYGVMIRALCKEKKSGEARNMFDEM-LERSFMPDSS 332
Query: 244 MVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMG 302
+ KV AL + ++ +A + + + C P ++ C E R + + +
Sbjct: 333 LCCKVIDALCEDHKVDEACGLWRKMLKNNCMPDNALLSTLIHWLCKEGR--VTEARKLFD 390
Query: 303 MTERGFIPYIKVRQKVVEGLAGVGE 327
E+G IP + ++ G+ GE
Sbjct: 391 EFEKGSIPSLLTYNTLIAGMCEKGE 415
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/142 (23%), Positives = 67/142 (47%), Gaps = 7/142 (4%)
Query: 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSS--AWLERRCQSQSVADILLEMKSIGYHPDC 171
H + A + ++ L++ C+P LLS+ WL + + + E + G P
Sbjct: 345 HKVDEACGLWRKMLKNNCMPD---NALLSTLIHWLCKEGRVTEARKLFDEFEK-GSIPSL 400
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
T N L++ +C +L EA ++ M +C P+ +Y+++I +S + V +++E
Sbjct: 401 LTYNTLIAGMCEKGELTEAGRLWDDMYERKCKPNAFTYNVLIEGLSKNGNVKEGVRVLEE 460
Query: 232 MVLNMGLMPRQGMVIKVAAALR 253
M L +G P + + + L+
Sbjct: 461 M-LEIGCFPNKTTFLILFEGLQ 481
Score = 32.3 bits (72), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/67 (25%), Positives = 32/67 (47%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
P+ T N L+ L + E +VL+ M C P+ ++ I+ + K DA+++
Sbjct: 433 PNAFTYNVLIEGLSKNGNVKEGVRVLEEMLEIGCFPNKTTFLILFEGLQKLGKEEDAMKI 492
Query: 229 MKEMVLN 235
+ V+N
Sbjct: 493 VSMAVMN 499
>sp|Q9SR00|PP213_ARATH Pentatricopeptide repeat-containing protein At3g04760,
chloroplastic OS=Arabidopsis thaliana GN=At3g04760 PE=2
SV=1
Length = 602
Score = 62.0 bits (149), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 86/181 (47%), Gaps = 9/181 (4%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYH 168
+L +P A+ +++ + G Q + +A + C+ + D +L M+S +
Sbjct: 136 TLRNIPKAVRVMEILEKFG-----QPDVFAYNALINGFCKMNRIDDATRVLDRMRSKDFS 190
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N ++ SLC+ +L A KVL + S C P + +Y+I+I A ++A+++
Sbjct: 191 PDTVTYNIMIGSLCSRGKLDLALKVLNQLLSDNCQPTVITYTILIEATMLEGGVDEALKL 250
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288
M EM L+ GL P + + + +A EM+ LE KGC Y +++ L
Sbjct: 251 MDEM-LSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVRNLELKGCEPDVISYNILLRALL 309
Query: 289 E 289
Sbjct: 310 N 310
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 56/196 (28%), Positives = 88/196 (44%), Gaps = 11/196 (5%)
Query: 52 ELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA-YDYLLS 107
LL +E P+ +S+ ++ F + R+ V E LE+ I P I Y+ +L+
Sbjct: 354 NLLKLMKEKGLTPDAYSYDPLIAAFCREGRLDVAIEFLETMIS--DGCLPDIVNYNTVLA 411
Query: 108 YTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166
TL AL I + GC P + S+ W ++LEM S G
Sbjct: 412 -TLCKNGKADQALEIFGKLGEVGCSPNSSSYNTMFSALW--SSGDKIRALHMILEMMSNG 468
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
PD T N ++S LC + EA ++L M S E P + +Y+IV+ A + DA+
Sbjct: 469 IDPDEITYNSMISCLCREGMVDEAFELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAI 528
Query: 227 EMMKEMVLNMGLMPRQ 242
+++ MV N G P +
Sbjct: 529 NVLESMVGN-GCRPNE 543
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 143/328 (43%), Gaps = 37/328 (11%)
Query: 25 LRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI-- 79
++ +LR + + VR + E+L F + P+ F++ ++ F + +RI
Sbjct: 131 IKGFFTLRNIPKAVR----------VMEILEKFGQ----PDVFAYNALINGFCKMNRIDD 176
Query: 80 --KVIDEML-ESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VP 135
+V+D M + F P + Y+ ++ +L S L LAL +L + L C P V
Sbjct: 177 ATRVLDRMRSKDFSP------DTVTYNIMIG-SLCSRGKLDLALKVLNQLLSDNCQPTVI 229
Query: 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + LE ++ EM S G PD T N ++ +C + A ++++
Sbjct: 230 TYTILIEATMLEGGVDE--ALKLMDEMLSRGLKPDMFTYNTIIRGMCKEGMVDRAFEMVR 287
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
+ C PD+ SY+I++ A+ K + ++M +M + P + L +
Sbjct: 288 NLELKGCEPDVISYNILLRALLNQGKWEEGEKLMTKM-FSEKCDPNVVTYSILITTLCRD 346
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIK 313
++ +A+ +++ ++ KG Y+ ++ CRE L A + + M G +P I
Sbjct: 347 GKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAF--CREGRLDVAIEFLETMISDGCLPDIV 404
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341
V+ L G+ A + + E+
Sbjct: 405 NYNTVLATLCKNGKADQALEIFGKLGEV 432
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 66/153 (43%), Gaps = 1/153 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
++ +M S P+ T + L+++LC ++ EA +LK M PD SY +I A
Sbjct: 320 LMTKMFSEKCDPNVVTYSILITTLCRDGKIEEAMNLLKLMKEKGLTPDAYSYDPLIAAFC 379
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ + A+E ++ M+ + G +P V A L N + +A+E+ L GC
Sbjct: 380 REGRLDVAIEFLETMISD-GCLPDIVNYNTVLATLCKNGKADQALEIFGKLGEVGCSPNS 438
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
Y + + I A ++ M G P
Sbjct: 439 SSYNTMFSALWSSGDKIRALHMILEMMSNGIDP 471
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 43/77 (55%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L++M+S +HP T N ++ C ++ +A VL+ M C P+ +Y+++I +
Sbjct: 494 ELLVDMRSCEFHPSVVTYNIVLLGFCKAHRIEDAINVLESMVGNGCRPNETTYTVLIEGI 553
Query: 217 STARKTNDAVEMMKEMV 233
A +A+E+ ++V
Sbjct: 554 GFAGYRAEAMELANDLV 570
>sp|Q0WPZ6|PP158_ARATH Pentatricopeptide repeat-containing protein At2g17140
OS=Arabidopsis thaliana GN=At2g17140 PE=2 SV=1
Length = 874
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/239 (25%), Positives = 102/239 (42%), Gaps = 55/239 (23%)
Query: 112 SLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
S+ + A ++LQ +R+ C+P +LL S W R ++L +M GY D
Sbjct: 408 SVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGRISE--AEELLRKMNEKGYGLD 465
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGM----SSA-------------------ECVPDLE 207
TCN +V LC +L +A +++KGM S+A C+PDL
Sbjct: 466 TVTCNIIVDGLCGSGELDKAIEIVKGMRVHGSAALGNLGNSYIGLVDDSLIENNCLPDLI 525
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA 254
+YS ++ + A + +A + EM + L P +QG K+++A R
Sbjct: 526 TYSTLLNGLCKAGRFAEAKNLFAEM-MGEKLQPDSVAYNIFIHHFCKQG---KISSAFRV 581
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG-MTERGFIPYI 312
++M E+KGC + Y ++ G L + I +M M E+G P I
Sbjct: 582 LKDM----------EKKGCHKSLETYNSLILG-LGIKNQIFEIHGLMDEMKEKGISPNI 629
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 58/254 (22%), Positives = 111/254 (43%), Gaps = 11/254 (4%)
Query: 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI--RLLLSSAWLERR 149
L+P S +AY+ + + + + A +L+ + GC + L+L L +
Sbjct: 555 LQPDS---VAYNIFIHHFCKQ-GKISSAFRVLKDMEKKGCHKSLETYNSLILG---LGIK 607
Query: 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY 209
Q + ++ EMK G P+ T N + LC +++ +A +L M P++ S+
Sbjct: 608 NQIFEIHGLMDEMKEKGISPNICTYNTAIQYLCEGEKVEDATNLLDEMMQKNIAPNVFSF 667
Query: 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269
+I A + A E+ + V G ++G+ + L A ++ KA E++E +
Sbjct: 668 KYLIEAFCKVPDFDMAQEVFETAVSICG--QKEGLYSLMFNELLAAGQLLKATELLEAVL 725
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
+G +G Y+ +VE + E +A + M +RG+ V++GL +G K
Sbjct: 726 DRGFELGTFLYKDLVESLCKKDELEVASGILHKMIDRGYGFDPAALMPVIDGLGKMGNKK 785
Query: 330 LATVVRQRFAELKS 343
A + E+ S
Sbjct: 786 EANSFADKMMEMAS 799
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 78/173 (45%), Gaps = 3/173 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L M+S G P+ N +VSS C + ++ K+++ M VPD+ +++ I A+
Sbjct: 203 ELLNAMESFGVLPNKVIYNTIVSSFCREGRNDDSEKMVEKMREEGLVPDIVTFNSRISAL 262
Query: 217 STARKTNDAVEMMKEMVLNMGL-MPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGC 273
K DA + +M L+ L +PR + + + A + E +
Sbjct: 263 CKEGKVLDASRIFSDMELDEYLGLPRPNSITYNLMLKGFCKVGLLEDAKTLFESIRENDD 322
Query: 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Q Y + ++G + ++I A + MT++G P I +++GL +G
Sbjct: 323 LASLQSYNIWLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLG 375
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 37/166 (22%), Positives = 69/166 (41%), Gaps = 4/166 (2%)
Query: 145 WLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201
WL+ R + +L +M G P + N L+ LC + L +A ++ M
Sbjct: 332 WLQGLVRHGKFIEAETVLKQMTDKGIGPSIYSYNILMDGLCKLGMLSDAKTIVGLMKRNG 391
Query: 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261
PD +Y ++ + K + A +++EM+ N L I + + + R + +A
Sbjct: 392 VCPDAVTYGCLLHGYCSVGKVDAAKSLLQEMMRNNCLPNAYTCNILLHSLWKMGR-ISEA 450
Query: 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307
E++ + KG + ++V+G E A + V GM G
Sbjct: 451 EELLRKMNEKGYGLDTVTCNIIVDGLCGSGELDKAIEIVKGMRVHG 496
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 30/135 (22%), Positives = 61/135 (45%), Gaps = 3/135 (2%)
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
LLL S ERR + V+ + +M G P T N L+ +LC + A ++ M
Sbjct: 116 NLLLESCIKERRVEF--VSWLYKDMVLCGIAPQTYTFNLLIRALCDSSCVDAARELFDEM 173
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
C P+ ++ I++ A T+ +E++ M + G++P + + + ++
Sbjct: 174 PEKGCKPNEFTFGILVRGYCKAGLTDKGLELLNAME-SFGVLPNKVIYNTIVSSFCREGR 232
Query: 258 MWKAVEMIEFLERKG 272
+ +M+E + +G
Sbjct: 233 NDDSEKMVEKMREEG 247
>sp|Q9FNL2|PP418_ARATH Pentatricopeptide repeat-containing protein At5g46100
OS=Arabidopsis thaliana GN=At5g46100 PE=2 SV=1
Length = 472
Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 43/186 (23%), Positives = 85/186 (45%), Gaps = 5/186 (2%)
Query: 150 CQSQSVAD----ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C++ D I LEM G PD T L+S LC ++ EA K+ M +C P
Sbjct: 167 CRNDGTVDAGLKIFLEMPKRGCDPDSYTYGTLISGLCRFGRIDEAKKLFTEMVEKDCAPT 226
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ +I + ++ ++A+ ++EM + G+ P + L + +A+E+
Sbjct: 227 VVTYTSLINGLCGSKNVDEAMRYLEEMK-SKGIEPNVFTYSSLMDGLCKDGRSLQAMELF 285
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
E + +GC Y ++ G + ++ A + + M +G P + KV+ G +
Sbjct: 286 EMMMARGCRPNMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYGKVISGFCAI 345
Query: 326 GEWKLA 331
+++ A
Sbjct: 346 SKFREA 351
Score = 35.8 bits (81), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 14/164 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A+ + + + GC P ++ + + C+ Q + ++L M G PD G
Sbjct: 281 AMELFEMMMARGCRP----NMVTYTTLITGLCKEQKIQEAVELLDRMNLQGLKPDAGLYG 336
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
++S CAI + EAA L M P+ +++I + + + A + L
Sbjct: 337 KVISGFCAISKFREAANFLDEMILGGITPNRLTWNIHVKTSNEVVRGLCANYPSRAFTLY 396
Query: 236 MGLMPRQGMVIKVAA------ALRANREMWKAVEMIEFLERKGC 273
+ + R G+ ++V L E KAV++++ + GC
Sbjct: 397 LSMRSR-GISVEVETLESLVKCLCKKGEFQKAVQLVDEIVTDGC 439
>sp|Q9FLL3|PP412_ARATH Pentatricopeptide repeat-containing protein At5g41170,
mitochondrial OS=Arabidopsis thaliana GN=At5g41170 PE=2
SV=1
Length = 527
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/219 (21%), Positives = 98/219 (44%), Gaps = 8/219 (3%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
A++++ + + G P +++ + ++ C++ V + +M++ G PD
Sbjct: 161 AMSMVNQMVEMGIKP----DVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYT 216
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
LV+ LC + +A +L+GM+ + PD+ +++ +I A K DA E+ EM+
Sbjct: 217 SLVNGLCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKFLDAEELYNEMI-R 275
Query: 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
M + P + + +A +M +E KGC Y ++ G +C++
Sbjct: 276 MSIAPNIFTYTSLINGFCMEGCVDEARQMFYLMETKGCFPDVVAYTSLINGFCKCKKVDD 335
Query: 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
A K M+++G +++G VG+ +A V
Sbjct: 336 AMKIFYEMSQKGLTGNTITYTTLIQGFGQVGKPNVAQEV 374
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/222 (22%), Positives = 91/222 (40%), Gaps = 8/222 (3%)
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIG 166
LH L A+ T P+P I +LL A +++ V ++ ++ +G
Sbjct: 46 NGLHSLQFNEALDLFTHMVESRPLPSIIDFTKLLNVIAKMKK---FDVVINLCDHLQIMG 102
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
D TCN L++ C Q A+ L M PD+ +++ +I + +A+
Sbjct: 103 VSHDLYTCNLLMNCFCQSSQPYLASSFLGKMMKLGFEPDIVTFTSLINGFCLGNRMEEAM 162
Query: 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
M+ +MV MG+ P M + +L N + A+ + + +E G Y +V G
Sbjct: 163 SMVNQMV-EMGIKPDVVMYTTIIDSLCKNGHVNYALSLFDQMENYGIRPDVVMYTSLVNG 221
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ A + GMT+R P + +++ G++
Sbjct: 222 LCNSGRWRDADSLLRGMTKRKIKPDVITFNALIDAFVKEGKF 263
>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090
OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1
Length = 660
Score = 58.5 bits (140), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 58/231 (25%), Positives = 99/231 (42%), Gaps = 5/231 (2%)
Query: 63 NPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALA 121
+PN SF +++ +D +E F + R Y Y L L + A+
Sbjct: 184 SPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEAVL 243
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L GC P P I +L L ++ V ++ M G P+ T N L+ L
Sbjct: 244 LLDEMQSEGCSPSPVIYNVLIDG-LCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGL 302
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
C +L +A +L+ M S++C+P+ +Y +I + R+ DAV ++ M G
Sbjct: 303 CLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSME-ERGYHLN 361
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
Q + + + L + +A+ + + KGC Y V+V+G CRE
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGL--CRE 410
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 56/253 (22%), Positives = 113/253 (44%), Gaps = 10/253 (3%)
Query: 80 KVIDEM-LESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
K++D M L+ +P ++ Y+ L+ + L L A+++L+R + S C+P
Sbjct: 278 KLVDNMFLKGCVP------NEVTYNTLI-HGLCLKGKLDKAVSLLERMVSSKCIPNDVTY 330
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L + +++R + +V +L M+ GYH + + L+S L + EA + + M+
Sbjct: 331 GTLINGLVKQRRATDAVR-LLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMA 389
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
C P++ YS+++ + K N+A E++ M+ + G +P +
Sbjct: 390 EKGCKPNIVVYSVLVDGLCREGKPNEAKEILNRMIAS-GCLPNAYTYSSLMKGFFKTGLC 448
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+AV++ + +++ GC Y V+++G A M G P +
Sbjct: 449 EEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSI 508
Query: 319 VEGLAGVGEWKLA 331
++GL G+G A
Sbjct: 509 IKGLCGIGSMDAA 521
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 34/157 (21%), Positives = 68/157 (43%), Gaps = 3/157 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A IL R + SGC+P L + + ++V + EM G + + L+
Sbjct: 416 AKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAV-QVWKEMDKTGCSRNKFCYSVLI 474
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
LC + ++ EA V M + PD +YS +I + + A+++ EM+
Sbjct: 475 DGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEP 534
Query: 239 MPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGC 273
+ +V + L +++ +AV+++ + +GC
Sbjct: 535 KSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGC 571
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 32/179 (17%), Positives = 68/179 (37%), Gaps = 36/179 (20%)
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
++ P+ + N ++ +LC + + A +V +GM +C+PD +Y ++ + + +
Sbjct: 180 NMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERID 239
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283
+AV ++ EM + +GC Y V+
Sbjct: 240 EAVLLLDEM------------------------------------QSEGCSPSPVIYNVL 263
Query: 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342
++G + + K V M +G +P ++ GL G+ A + +R K
Sbjct: 264 IDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSK 322
>sp|Q9FMD3|PP389_ARATH Pentatricopeptide repeat-containing protein At5g16640,
mitochondrial OS=Arabidopsis thaliana GN=At5g16640 PE=2
SV=1
Length = 504
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/203 (22%), Positives = 94/203 (46%), Gaps = 4/203 (1%)
Query: 138 RLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194
+++ + ++ C+S+ V D+L M+ G PD T N L+S LC+ + +A +++
Sbjct: 185 NVVIYNTIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMV 244
Query: 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254
M+ E PD+ +++ +I A + ++A E +EM+ L P + L
Sbjct: 245 SCMTKREIYPDVFTFNALIDACVKEGRVSEAEEFYEEMI-RRSLDPDIVTYSLLIYGLCM 303
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+ +A EM F+ KGC Y +++ G + ++ K M++RG +
Sbjct: 304 YSRLDEAEEMFGFMVSKGCFPDVVTYSILINGYCKSKKVEHGMKLFCEMSQRGVVRNTVT 363
Query: 315 RQKVVEGLAGVGEWKLATVVRQR 337
+++G G+ +A + +R
Sbjct: 364 YTILIQGYCRAGKLNVAEEIFRR 386
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/200 (21%), Positives = 84/200 (42%), Gaps = 8/200 (4%)
Query: 131 CVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186
C P+P I RLL + + +++ V + +M+ +G + TCN L++ C Q
Sbjct: 75 CRPLPSIADFSRLLSAISKMKKY---DVVIYLWEQMQMLGIPHNLCTCNILLNCFCRCSQ 131
Query: 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246
L A L M P + ++ ++ + DA+ M +MV MG P +
Sbjct: 132 LSLALSFLGKMIKLGHEPSIVTFGSLLNGFCRGDRVYDALYMFDQMV-GMGYKPNVVIYN 190
Query: 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ L ++++ A++++ +E+ G Y ++ G + A + V MT+R
Sbjct: 191 TIIDGLCKSKQVDNALDLLNRMEKDGIGPDVVTYNSLISGLCSSGRWSDATRMVSCMTKR 250
Query: 307 GFIPYIKVRQKVVEGLAGVG 326
P + +++ G
Sbjct: 251 EIYPDVFTFNALIDACVKEG 270
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/116 (25%), Positives = 49/116 (42%), Gaps = 17/116 (14%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I M G HP+ T N L+ LC ++ +A +L M D+ +Y+I+I M
Sbjct: 382 EIFRRMVFCGVHPNIITYNVLLHGLCDNGKIEKALVILADMQKNGMDADIVTYNIIIRGM 441
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
A + DA ++ + GLMP ++W M+ L +KG
Sbjct: 442 CKAGEVADAWDIYCSLNCQ-GLMP----------------DIWTYTTMMLGLYKKG 480
>sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820
OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1
Length = 637
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 40/170 (23%), Positives = 75/170 (44%), Gaps = 1/170 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+L +M+ G+ P+ L+ +LC +D++ EA KV M EC D+ +Y+ ++
Sbjct: 308 DLLRDMRRRGFEPNANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGF 367
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K + ++ +M+ GLMP + + + A + +E++E + +
Sbjct: 368 CKWGKIDKCYIVLDDMI-KKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPD 426
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y VV+ + E A + M E G P + ++ GLA G
Sbjct: 427 IGIYNVVIRLACKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQG 476
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 56/112 (50%), Gaps = 1/112 (0%)
Query: 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181
+L ++ G +P + + A E++ + +++ +M+ I YHPD G N ++
Sbjct: 379 VLDDMIKKGLMPSELTYMHIMVAH-EKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLA 437
Query: 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
C + ++ EA ++ M P ++++ I+I +++ +A + KEMV
Sbjct: 438 CKLGEVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMV 489
Score = 40.8 bits (94), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 35/143 (24%), Positives = 63/143 (44%), Gaps = 3/143 (2%)
Query: 146 LERRCQSQSVADI--LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203
L+ C+ SV D L E + + + L+ C + +++EA VL M+ A
Sbjct: 225 LDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNEAGFE 284
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
PD+ Y+ ++ + A K DA +++++M G P + AL M +A++
Sbjct: 285 PDIVDYTNLLSGYANAGKMADAYDLLRDM-RRRGFEPNANCYTVLIQALCKVDRMEEAMK 343
Query: 264 MIEFLERKGCPIGFQGYEVVVEG 286
+ +ER C Y +V G
Sbjct: 344 VFVEMERYECEADVVTYTALVSG 366
>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700,
chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1
Length = 754
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/131 (25%), Positives = 67/131 (51%), Gaps = 4/131 (3%)
Query: 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ D++L+ GY PD T N ++S LC + ++ EA +VL M + +C P+ +Y+ +I
Sbjct: 317 IMDVMLQE---GYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIS 373
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ + +A E+ + ++ + G++P + L R A+E+ E + KGC
Sbjct: 374 TLCKENQVEEATELAR-VLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCE 432
Query: 275 IGFQGYEVVVE 285
Y ++++
Sbjct: 433 PDEFTYNMLID 443
Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 62/255 (24%), Positives = 111/255 (43%), Gaps = 10/255 (3%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQI 137
++V+D+M+ R S + Y+ L+S TL + + A + + G +P V
Sbjct: 350 VEVLDQMIT-----RDCSPNTVTYNTLIS-TLCKENQVEEATELARVLTSKGILPDVCTF 403
Query: 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197
L+ L R + ++ EM+S G PD T N L+ SLC+ +L EA +LK M
Sbjct: 404 NSLIQGLCLTR--NHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQM 461
Query: 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257
+ C + +Y+ +I A KT +A E+ EM ++ G+ + L +R
Sbjct: 462 ELSGCARSVITYNTLIDGFCKANKTREAEEIFDEMEVH-GVSRNSVTYNTLIDGLCKSRR 520
Query: 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317
+ A ++++ + +G Y ++ + A V MT G P I
Sbjct: 521 VEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGT 580
Query: 318 VVEGLAGVGEWKLAT 332
++ GL G ++A+
Sbjct: 581 LISGLCKAGRVEVAS 595
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 92/203 (45%), Gaps = 14/203 (6%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V D ++ +M G PD T N L++ C + +AA +++ M+S C PD+
Sbjct: 516 CKSRRVEDAAQLMDQMIMEGQKPDKYTYNSLLTHFCRGGDIKKAADIVQAMTSNGCEPDI 575
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVL-NMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+Y +I + A + A ++++ + + + L P V L R+ +A+ +
Sbjct: 576 VTYGTLISGLCKAGRVEVASKLLRSIQMKGINLTPHA--YNPVIQGLFRKRKTTEAINLF 633
Query: 266 -EFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323
E LE+ P Y +V G C A ++ + E+GF+P + EGL
Sbjct: 634 REMLEQNEAPPDAVSYRIVFRGLCNGGGPIREAVDFLVELLEKGFVPEFSSLYMLAEGLL 693
Query: 324 GVGEW----KLATVVRQ--RFAE 340
+ KL +V Q RF+E
Sbjct: 694 TLSMEETLVKLVNMVMQKARFSE 716
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 31/134 (23%), Positives = 71/134 (52%), Gaps = 1/134 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ ++L +M + P+ T N L+S+LC +Q+ EA ++ + ++S +PD+ +++ +
Sbjct: 347 KEAVEVLDQMITRDCSPNTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSL 406
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + R A+E+ +EM + G P + + +L + ++ +A+ M++ +E G
Sbjct: 407 IQGLCLTRNHRVAMELFEEM-RSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSG 465
Query: 273 CPIGFQGYEVVVEG 286
C Y +++G
Sbjct: 466 CARSVITYNTLIDG 479
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 5/186 (2%)
Query: 150 CQSQSVADILLEMKSI----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
C+ V D L ++ + G+ PD T N LV+ LC + A +++ M PD
Sbjct: 270 CKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPD 329
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ +Y+ VI + + +AVE++ +M+ P + + L ++ +A E+
Sbjct: 330 VYTYNSVISGLCKLGEVKEAVEVLDQMI-TRDCSPNTVTYNTLISTLCKENQVEEATELA 388
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325
L KG + +++G R + +A + M +G P +++ L
Sbjct: 389 RVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFTYNMLIDSLCSK 448
Query: 326 GEWKLA 331
G+ A
Sbjct: 449 GKLDEA 454
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 74/178 (41%), Gaps = 8/178 (4%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G PD T N L+ +LC QL A +L+ M S VPD ++++ V+
Sbjct: 179 KMSVWGIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEG 238
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF--- 277
+ A+ + ++MV G + V + + + + + F++ GF
Sbjct: 239 DLDGALRIREQMV-EFGCSWSN---VSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPD 294
Query: 278 -QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
+ +V G + A + + M + G+ P + V+ GL +GE K A V
Sbjct: 295 QYTFNTLVNGLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEV 352
>sp|Q9S7R4|PP125_ARATH Pentatricopeptide repeat-containing protein At1g74900,
mitochondrial OS=Arabidopsis thaliana GN=OTP43 PE=2 SV=1
Length = 482
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 67/293 (22%), Positives = 111/293 (37%), Gaps = 46/293 (15%)
Query: 80 KVIDEMLESFIPLRPR-SRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVP-VPQ 136
K +++ E F LR R S + Y+ +L+ + L + P AL +L+ + G P +
Sbjct: 175 KRVEKAYELFRALRGRFSVDTVTYNVILNGWCL--IKRTPKALEVLKEMVERGINPNLTT 232
Query: 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + R Q + + LEMK D T +V ++ A V
Sbjct: 233 YNTMLKGFF--RAGQIRHAWEFFLEMKKRDCEIDVVTYTTVVHGFGVAGEIKRARNVFDE 290
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M +P + +Y+ +I + +AV M +EMV G P + L
Sbjct: 291 MIREGVLPSVATYNAMIQVLCKKDNVENAVVMFEEMV-RRGYEPNVTTYNVLIRGLFHAG 349
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY----------------------- 293
E + E+++ +E +GC FQ Y +++ EC E
Sbjct: 350 EFSRGEELMQRMENEGCEPNFQTYNMMIRYYSECSEVEKALGLFEKMGSGDCLPNLDTYN 409
Query: 294 ---------------ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
++AGK ++ M ERGFIP +V+ GL G A
Sbjct: 410 ILISGMFVRKRSEDMVVAGKLLLEMVERGFIPRKFTFNRVLNGLLLTGNQAFA 462
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 77/344 (22%), Positives = 135/344 (39%), Gaps = 50/344 (14%)
Query: 28 MSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP-----FSFLSNFPQNHRIKVI 82
+SS T + + + K P L+ S + N P F FL N +HR V
Sbjct: 33 LSSPNTTHQDDQFLLSTKTTPWTPNLVNSVLKRLWNHGPKALQFFHFLDN---HHREYVH 89
Query: 83 DEMLESF-----IPLRPRSRPKIAYDYLLSYTLQSLH--PLPLALAILQRTLRSGCVPVP 135
D SF I R P + + L + ++SL P P AI+ S P
Sbjct: 90 DA--SSFDLAIDIAARLHLHPTV---WSLIHRMRSLRIGPSPKTFAIVAERYASAGKPDK 144
Query: 136 QIRLLLS---SAWLERRCQSQSVADILLEMKSIG------------YHPDCGTCNYLVSS 180
++L L+ + ++ D+L + K + + D T N +++
Sbjct: 145 AVKLFLNMHEHGCFQDLASFNTILDVLCKSKRVEKAYELFRALRGRFSVDTVTYNVILNG 204
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM---MKEMVLNMG 237
C I + +A +VLK M P+L +Y+ ++ A + A E MK+ +
Sbjct: 205 WCLIKRTPKALEVLKEMVERGINPNLTTYNTMLKGFFRAGQIRHAWEFFLEMKKRDCEID 264
Query: 238 LMPRQGMV--IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295
++ +V VA ++ R ++ EMI R+G Y +++ + C++ +
Sbjct: 265 VVTYTTVVHGFGVAGEIKRARNVFD--EMI----REGVLPSVATYNAMIQ--VLCKKDNV 316
Query: 296 AGKTVM--GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
VM M RG+ P + ++ GL GE+ + QR
Sbjct: 317 ENAVVMFEEMVRRGYEPNVTTYNVLIRGLFHAGEFSRGEELMQR 360
>sp|Q8LDU5|PP298_ARATH Pentatricopeptide repeat-containing protein At4g01400,
mitochondrial OS=Arabidopsis thaliana GN=At4g01400 PE=2
SV=2
Length = 466
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/211 (22%), Positives = 91/211 (43%), Gaps = 5/211 (2%)
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
L+ + L P P+ + + R Q ++ + G P+ + N L+
Sbjct: 139 LSTFYKMLEFNFTPQPKHLNRILDVLVSHRGYLQKAFELFKSSRLHGVMPNTRSYNLLMQ 198
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
+ C D L A ++ M + VPD++SY I+I + N A+E++ +M LN G +
Sbjct: 199 AFCLNDDLSIAYQLFGKMLERDVVPDVDSYKILIQGFCRKGQVNGAMELLDDM-LNKGFV 257
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE--YILAG 297
P + + +L ++ +A +++ ++ KGC Y ++ G CRE + A
Sbjct: 258 PDRLSYTTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGF--CREDRAMDAR 315
Query: 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
K + M G P + ++ GL G +
Sbjct: 316 KVLDDMLSNGCSPNSVSYRTLIGGLCDQGMF 346
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/167 (25%), Positives = 79/167 (47%), Gaps = 4/167 (2%)
Query: 119 ALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
A+ +L L G VP LL+S L R+ Q + +L MK G +PD N +
Sbjct: 244 AMELLDDMLNKGFVPDRLSYTTLLNS--LCRKTQLREAYKLLCRMKLKGCNPDLVHYNTM 301
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ C D+ ++A KVL M S C P+ SY +IG + ++ + ++EM+ + G
Sbjct: 302 ILGFCREDRAMDARKVLDDMLSNGCSPNSVSYRTLIGGLCDQGMFDEGKKYLEEMI-SKG 360
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
P + + + ++ +A +++E + + G + +E+V+
Sbjct: 361 FSPHFSVSNCLVKGFCSFGKVEEACDVVEVVMKNGETLHSDTWEMVI 407
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/213 (22%), Positives = 82/213 (38%), Gaps = 39/213 (18%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
L +A + + L VP V ++L+ R+ Q ++L +M + G+ PD +
Sbjct: 206 LSIAYQLFGKMLERDVVPDVDSYKILIQGFC--RKGQVNGAMELLDDMLNKGFVPDRLSY 263
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
L++SLC QL EA K+L M C PDL Y+ +I + DA +++ +M+
Sbjct: 264 TTLLNSLCRKTQLREAYKLLCRMKLKGCNPDLVHYNTMILGFCREDRAMDARKVLDDMLS 323
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294
N GC Y ++ G + +
Sbjct: 324 N------------------------------------GCSPNSVSYRTLIGGLCDQGMFD 347
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
K + M +GF P+ V +V+G G+
Sbjct: 348 EGKKYLEEMISKGFSPHFSVSNCLVKGFCSFGK 380
>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470,
mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2
SV=1
Length = 619
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 90/215 (41%), Gaps = 36/215 (16%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM + G PD T N L+ C + L EA ++ M S C PD+ +YSI+I + A+
Sbjct: 340 EMITRGIAPDTITYNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAK 399
Query: 221 KTNDAVEMMKEMVLNMGLMPR------------------------QGMVIK--------- 247
+ +D + + +E + + GL+P Q MV +
Sbjct: 400 RVDDGMRLFRE-ISSKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTY 458
Query: 248 --VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305
+ L N E+ KA+E+ E +++ +G Y +++ G + A +++
Sbjct: 459 GILLDGLCDNGELNKALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKVDDAWSLFCSLSD 518
Query: 306 RGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+G P + ++ GL G A ++ ++ E
Sbjct: 519 KGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKE 553
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/204 (21%), Positives = 83/204 (40%), Gaps = 7/204 (3%)
Query: 143 SAWLERRCQSQSVADILL---EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
S ++ C+ S D L EM+ G D T + L+ LC + + AK+L+ M
Sbjct: 249 SIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMIG 308
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259
+PD+ ++S +I K +A E+ EM+ G+ P + +
Sbjct: 309 RNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMI-TRGIAPDTITYNSLIDGFCKENCLH 367
Query: 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319
+A +M + + KGC Y +++ + + + ++ +G IP +V
Sbjct: 368 EANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREISSKGLIPNTITYNTLV 427
Query: 320 EGLAGVGEWKLATVVRQRFAELKS 343
G G+ A ++ F E+ S
Sbjct: 428 LGFCQSGKLNAA---KELFQEMVS 448
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C + V D + + G PD T N ++ LC L EA + + M C PD
Sbjct: 501 CNASKVDDAWSLFCSLSDKGVKPDVVTYNVMIGGLCKKGSLSEADMLFRKMKEDGCTPDD 560
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+I+I A +VE+++EM
Sbjct: 561 FTYNILIRAHLGGSGLISSVELIEEM 586
Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 34/164 (20%), Positives = 68/164 (41%), Gaps = 1/164 (0%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+GY PD T + LV+ C ++ EA ++ M + PDL + S +I + + ++
Sbjct: 134 LGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQRPDLVTVSTLINGLCLKGRVSE 193
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ ++ MV G P + V L + A+++ +E + Y +V+
Sbjct: 194 ALVLIDRMV-EYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYSIVI 252
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328
+ + + A M +G + ++ GL G+W
Sbjct: 253 DSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKW 296
Score = 35.4 bits (80), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Query: 150 CQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQS + ++ EM S G P T L+ LC +L +A ++ + M + +
Sbjct: 431 CQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELNKALEIFEKMQKSRMTLGI 490
Query: 207 ESYSIVIGAMSTARKTNDA 225
Y+I+I M A K +DA
Sbjct: 491 GIYNIIIHGMCNASKVDDA 509
Score = 33.9 bits (76), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 50/118 (42%), Gaps = 7/118 (5%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCN 175
AL ++ R + G P + L R C+S + A D+ +M+ +
Sbjct: 194 ALVLIDRMVEYGFQPDE----VTYGPVLNRLCKSGNSALALDLFRKMEERNIKASVVQYS 249
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
++ SLC +A + M D+ +YS +IG + K +D +M++EM+
Sbjct: 250 IVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGKWDDGAKMLREMI 307
Score = 32.0 bits (71), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 44/200 (22%), Positives = 85/200 (42%), Gaps = 8/200 (4%)
Query: 116 LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGT 173
L A ++L R + G P L++ LE R ++ ++ D ++EMK PD T
Sbjct: 121 LLFAFSVLGRAWKLGYEPDTITFSTLVNGFCLEGRVSEAVALVDRMVEMKQ---RPDLVT 177
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM- 232
+ L++ LC ++ EA ++ M PD +Y V+ + + + A+++ ++M
Sbjct: 178 VSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDLFRKME 237
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
N+ Q + V +L + A+ + +E KG Y ++ G +
Sbjct: 238 ERNIKASVVQYSI--VIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCNDGK 295
Query: 293 YILAGKTVMGMTERGFIPYI 312
+ K + M R IP +
Sbjct: 296 WDDGAKMLREMIGRNIIPDV 315
>sp|Q9SXD1|PPR91_ARATH Pentatricopeptide repeat-containing protein At1g62670,
mitochondrial OS=Arabidopsis thaliana GN=At1g62670 PE=2
SV=2
Length = 630
Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 48/215 (22%), Positives = 94/215 (43%), Gaps = 8/215 (3%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
LPLALA+L + ++ G P ++ S+ L C S+ +++ ++ +M GY P+
Sbjct: 132 LPLALAVLGKMMKLGYEP----NIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTV 187
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L+ L ++ EA ++ M + C PDL +Y +V+ + T+ A ++ +M
Sbjct: 188 TFNTLIHGLFLHNKASEAMALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKM 247
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
L P + + L + M A+ + + +E KG Y ++
Sbjct: 248 EQGK-LEPGVLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGR 306
Query: 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M ER P + +++ G+
Sbjct: 307 WSDASRLLSDMIERKINPDVFTFSALIDAFVKEGK 341
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 89/196 (45%), Gaps = 4/196 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+L+ + ++ C+ + + D L EM++ G P+ T + L+S LC + +A+++L
Sbjct: 256 VLIYNTIIDGLCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLS 315
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + PD+ ++S +I A K +A ++ EMV + P + +
Sbjct: 316 DMIERKINPDVFTFSALIDAFVKEGKLVEAEKLYDEMV-KRSIDPSIVTYSSLINGFCMH 374
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ +A +M EF+ K C Y +++G + + + M++RG +
Sbjct: 375 DRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTY 434
Query: 316 QKVVEGLAGVGEWKLA 331
+++GL G+ +A
Sbjct: 435 NILIQGLFQAGDCDMA 450
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/174 (20%), Positives = 68/174 (39%), Gaps = 36/174 (20%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P T + L++ C D+L EA ++ + M S C PD+ +Y+ +I +
Sbjct: 351 EMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFEFMVSKHCFPDVVTYNTLIKGFCKYK 410
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +E M ++G+V Y
Sbjct: 411 RVEEGMEVFRE-------MSQRGLVGNTVT-----------------------------Y 434
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
++++G + + +A + M G P I +++GL G+ + A VV
Sbjct: 435 NILIQGLFQAGDCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVV 488
Score = 37.0 bits (84), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+I EM S G P+ T N L+ LC +L +A V + + ++ P + +Y+I+I M
Sbjct: 452 EIFKEMVSDGVPPNIMTYNTLLDGLCKNGKLEKAMVVFEYLQRSKMEPTIYTYNIMIEGM 511
Query: 217 STARKTNDAVEMMKEMVLNMGLMP 240
A K D ++ + L G+ P
Sbjct: 512 CKAGKVEDGWDLFCNLSLK-GVKP 534
>sp|O64624|PP163_ARATH Pentatricopeptide repeat-containing protein At2g18940
OS=Arabidopsis thaliana GN=At2g18940 PE=2 SV=1
Length = 822
Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 91/215 (42%), Gaps = 10/215 (4%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
AL++L+ + C P + A R S+ A ++ M G P+ T ++
Sbjct: 335 ALSVLKEMEENSC-PADSVTYNELVAAYVRAGFSKEAAGVIEMMTKKGVMPNAITYTTVI 393
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ + EA K+ M A CVP+ +Y+ V+ + ++N+ ++M+ +M N G
Sbjct: 394 DAYGKAGKEDEALKLFYSMKEAGCVPNTCTYNAVLSLLGKKSRSNEMIKMLCDMKSN-GC 452
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ----GYEVVVEGCLECREYI 294
P + AL N+ M K V + F E K C GF+ + ++ C +
Sbjct: 453 SPNRA-TWNTMLALCGNKGMDKFVNRV-FREMKSC--GFEPDRDTFNTLISAYGRCGSEV 508
Query: 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329
A K MT GF + ++ LA G+W+
Sbjct: 509 DASKMYGEMTRAGFNACVTTYNALLNALARKGDWR 543
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 51/117 (43%), Gaps = 1/117 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+ E+KS GY P T N L+ EA VLK M C D +Y+ ++ A
Sbjct: 302 EFFAELKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAY 361
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
A + +A ++ EM+ G+MP V A + +A+++ ++ GC
Sbjct: 362 VRAGFSKEAAGVI-EMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGC 417
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 40/157 (25%), Positives = 65/157 (41%), Gaps = 10/157 (6%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
IL ++ G PD T N L+ + +A ++LK + ++ PDL SY+ VI
Sbjct: 653 ILESIREDGLSPDLVTYNSLMDMYVRRGECWKAEEILKTLEKSQLKPDLVSYNTVIKGFC 712
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+AV M+ EM G+ P + A + ++IE + + C
Sbjct: 713 RRGLMQEAVRMLSEMT-ERGIRPCIFTYNTFVSGYTAMGMFAEIEDVIECMAKNDCRPNE 771
Query: 278 QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV 314
+++VV+G Y AGK M F+ IK
Sbjct: 772 LTFKMVVDG------YCRAGKYSEAMD---FVSKIKT 799
Score = 37.4 bits (85), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 62/167 (37%), Gaps = 40/167 (23%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
K GY PD N ++S + +A +L+ + PDL +Y+ +
Sbjct: 622 FKKHGYKPDMVIFNSMLSIFTRNNMYDQAEGILESIREDGLSPDLVTYNSL--------- 672
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
M + R+G E WKA E+++ LE+ Y
Sbjct: 673 --------------MDMYVRRG-------------ECWKAEEILKTLEKSQLKPDLVSYN 705
Query: 282 VVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
V++G CR ++ A + + MTERG P I V G +G
Sbjct: 706 TVIKGF--CRRGLMQEAVRMLSEMTERGIRPCIFTYNTFVSGYTAMG 750
Score = 35.8 bits (81), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 42/161 (26%), Positives = 73/161 (45%), Gaps = 7/161 (4%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV-EAAKVLKGMSSAECVPDLESYSI 211
+ + +L EM+S G D TC+ ++S+ CA + L+ EA + + S P +Y+
Sbjct: 263 RKILGVLDEMRSKGLKFDEFTCSTVLSA-CAREGLLREAKEFFAELKSCGYEPGTVTYNA 321
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK--VAAALRANREMWKAVEMIEFLE 269
++ A +A+ ++KEM N P + VAA +RA +A +IE +
Sbjct: 322 LLQVFGKAGVYTEALSVLKEMEENS--CPADSVTYNELVAAYVRAGFSK-EAAGVIEMMT 378
Query: 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310
+KG Y V++ + + A K M E G +P
Sbjct: 379 KKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAGCVP 419
>sp|Q9CAM8|PP100_ARATH Pentatricopeptide repeat-containing protein At1g63150
OS=Arabidopsis thaliana GN=At1g63150 PE=2 SV=1
Length = 629
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 37/178 (20%), Positives = 81/178 (45%), Gaps = 1/178 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ EM++ G P+ T N L++ LC + +A+++L M + P++ +++ +I A
Sbjct: 279 DLFTEMETKGIRPNVVTYNSLINCLCNYGRWSDASRLLSNMLEKKINPNVVTFNALIDAF 338
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A ++ +EM+ + P + + + +A +M +F+ K C
Sbjct: 339 FKEGKLVEAEKLHEEMI-QRSIDPDTITYNLLINGFCMHNRLDEAKQMFKFMVSKDCLPN 397
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Q Y ++ G +C+ + M++RG + +++G G+ A +V
Sbjct: 398 IQTYNTLINGFCKCKRVEDGVELFREMSQRGLVGNTVTYTTIIQGFFQAGDCDSAQMV 455
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/195 (20%), Positives = 78/195 (40%), Gaps = 1/195 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY PD T + L++ C ++ +A ++ M PD
Sbjct: 130 RRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVALVDQMVEMGYKPDTF 189
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ +MV G P V L ++ A+ ++
Sbjct: 190 TFTTLIHGLFLHNKASEAVALVDQMV-QRGCQPDLVTYGTVVNGLCKRGDIDLALNLLNK 248
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + +++ + R +A M +G P + ++ L G
Sbjct: 249 MEAARIKANVVIFNTIIDSLCKYRHVEVAVDLFTEMETKGIRPNVVTYNSLINCLCNYGR 308
Query: 328 WKLATVVRQRFAELK 342
W A+ + E K
Sbjct: 309 WSDASRLLSNMLEKK 323
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/126 (24%), Positives = 59/126 (46%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+++G D T + ++ C QL A VL M PD+ + S ++ ++
Sbjct: 108 QMQTLGISHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSK 167
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV MG P + L + + +AV +++ + ++GC Y
Sbjct: 168 RISDAVALVDQMV-EMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRGCQPDLVTY 226
Query: 281 EVVVEG 286
VV G
Sbjct: 227 GTVVNG 232
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 4/128 (3%)
Query: 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS 164
+L + L S L AL I + +S ++ + + + +E C++ V + S
Sbjct: 473 ILLHGLCSYGKLDTALVIFKYLQKSEM----ELNIFIYNTMIEGMCKAGKVGEAWDLFCS 528
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+ PD T N ++S LC+ L EA + + M +P+ +Y+ +I A
Sbjct: 529 LSIKPDVVTYNTMISGLCSKRLLQEADDLFRKMKEDGTLPNSGTYNTLIRANLRDCDRAA 588
Query: 225 AVEMMKEM 232
+ E++KEM
Sbjct: 589 SAELIKEM 596
>sp|Q9C8T7|PP101_ARATH Pentatricopeptide repeat-containing protein At1g63330
OS=Arabidopsis thaliana GN=At1g63330 PE=2 SV=2
Length = 559
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 59/118 (50%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N L++ C D+L +A ++ + M S +C PDL++Y+ +I +++ D E+
Sbjct: 288 PDIFTYNSLINGFCMHDRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTEL 347
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 348 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 404
Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L
Sbjct: 185 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 244
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + P+L +++ +I A K +A ++ +M+ + P + +
Sbjct: 245 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLHDDMI-KRSIDPDIFTYNSLINGFCMH 303
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ KA +M EF+ K C Y +++G + + + M+ RG +
Sbjct: 304 DRLDKAKQMFEFMVSKDCFPDLDTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 363
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 364 TTLIQGLFHDGD 375
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 58/126 (46%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G + T N L++ C Q+ A +L M P + + S ++ +
Sbjct: 35 KMQRLGISHNLYTYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGK 94
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV MG P + L + + +AV +++ + ++GC Y
Sbjct: 95 RISDAVALVDQMV-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTY 153
Query: 281 EVVVEG 286
VVV G
Sbjct: 154 GVVVNG 159
Score = 37.4 bits (85), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 1/195 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY P T + L++ C ++ +A ++ M PD
Sbjct: 57 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 116
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ MV G P V L ++ A ++
Sbjct: 117 TFTTLIHGLFLHNKASEAVALVDRMV-QRGCQPNLVTYGVVVNGLCKRGDIDLAFNLLNK 175
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + +++ + R A M +G P + ++ L G
Sbjct: 176 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 235
Query: 328 WKLATVVRQRFAELK 342
W A+ + E K
Sbjct: 236 WSDASQLLSDMIEKK 250
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M S G PD T + L+ LC +L +A +V M +E D+ Y+ +I M
Sbjct: 382 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 441
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
A K +D ++ + L G+ P + + L + R + +A +++ ++ G
Sbjct: 442 KAGKVDDGWDLFCSLSLK-GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 495
Score = 36.2 bits (82), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 48/100 (48%), Gaps = 3/100 (3%)
Query: 136 QIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
++ + + + +E C++ V D + + G P+ T N ++S LC+ L EA
Sbjct: 427 KLDIYIYTTMIEGMCKAGKVDDGWDLFCSLSLKGVKPNVVTYNTMISGLCSKRLLQEAYA 486
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
+LK M +PD +Y+ +I A + E+++EM
Sbjct: 487 LLKKMKEDGPLPDSGTYNTLIRAHLRDGDKAASAELIREM 526
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 3/86 (3%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+S+ V D + EM G D T L+ L A KV K M S PD+
Sbjct: 336 CKSKRVEDGTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDI 395
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEM 232
+YSI++ + K A+E+ M
Sbjct: 396 MTYSILLDGLCNNGKLEKALEVFDYM 421
>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560
OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1
Length = 915
Score = 55.1 bits (131), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 59/294 (20%)
Query: 54 LGSFEEACQ----------NPNPFSFLSNFPQNHRIKVIDEMLESF--IPLRPRSRPKIA 101
LG+ EEA Q +P+ F++ S + K +D + F +PL+ R ++A
Sbjct: 231 LGNVEEANQYVSKIVEAGLDPDFFTYTSLIMGYCQRKDLDSAFKVFNEMPLKGCRRNEVA 290
Query: 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161
Y +L+ H L +A I D+ ++
Sbjct: 291 YTHLI-------HGLCVARRI------------------------------DEAMDLFVK 313
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MK P T L+ SLC ++ EA ++K M P++ +Y+++I ++ + K
Sbjct: 314 MKDDECFPTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCK 373
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--NREMWK-AVEMIEFLERKGCPIGFQ 278
A E++ +M L GLMP VI A + R M + AV+++E +E + +
Sbjct: 374 FEKARELLGQM-LEKGLMPN---VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTR 429
Query: 279 GYEVVVEGCLECREYILAGKTVMG-MTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y +++G C+ + V+ M ER +P + +++G G + A
Sbjct: 430 TYNELIKG--YCKSNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSA 481
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 55/266 (20%), Positives = 117/266 (43%), Gaps = 15/266 (5%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
+ ++ EM E+ I +P I +L +L S A +L + L G +P
Sbjct: 343 LNLVKEMEETGI------KPNIHTYTVLIDSLCSQCKFEKARELLGQMLEKGLMP----N 392
Query: 139 LLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
++ +A + C+ + D++ M+S P+ T N L+ C + +A VL
Sbjct: 393 VITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK-SNVHKAMGVLN 451
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + +PD+ +Y+ +I + + A ++ M + GL+P Q + +L +
Sbjct: 452 KMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMN-DRGLVPDQWTYTSMIDSLCKS 510
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ + +A ++ + LE+KG Y +++G + + A + M + +P
Sbjct: 511 KRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKMLSKNCLPNSLTF 570
Query: 316 QKVVEGLAGVGEWKLATVVRQRFAEL 341
++ GL G+ K AT++ ++ ++
Sbjct: 571 NALIHGLCADGKLKEATLLEEKMVKI 596
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 56/266 (21%), Positives = 102/266 (38%), Gaps = 27/266 (10%)
Query: 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156
+P ++ D +L + L A + Q+ L SG P + R +
Sbjct: 599 QPTVSTDTILIHRLLKDGDFDHAYSRFQQMLSSGTKPDAHTYTTFIQTYC-REGRLLDAE 657
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG-- 214
D++ +M+ G PD T + L+ + Q A VLK M C P ++ +I
Sbjct: 658 DMMAKMRENGVSPDLFTYSSLIKGYGDLGQTNFAFDVLKRMRDTGCEPSQHTFLSLIKHL 717
Query: 215 ----------------AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
AMS + + VE++++MV + P K+ + +
Sbjct: 718 LEMKYGKQKGSEPELCAMSNMMEFDTVVELLEKMV-EHSVTPNAKSYEKLILGICEVGNL 776
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC----REYILAGKTVMGMTERGFIPYIKV 314
A ++ + ++R G E+V L C +++ A K V M G +P ++
Sbjct: 777 RVAEKVFDHMQRNE---GISPSELVFNALLSCCCKLKKHNEAAKVVDDMICVGHLPQLES 833
Query: 315 RQKVVEGLAGVGEWKLATVVRQRFAE 340
+ ++ GL GE + T V Q +
Sbjct: 834 CKVLICGLYKKGEKERGTSVFQNLLQ 859
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/113 (23%), Positives = 51/113 (45%), Gaps = 3/113 (2%)
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
N L+S C + + EAAKV+ M +P LES ++I + + + + + L
Sbjct: 800 NALLSCCCKLKKHNEAAKVVDDMICVGHLPQLESCKVLICGLYKKGEKERGTSVFQNL-L 858
Query: 235 NMGLMPRQGMVIKVAAALRANREMWKAV-EMIEFLERKGCPIGFQGYEVVVEG 286
G + + K+ + + +A E+ +E+ GC Q Y +++EG
Sbjct: 859 QCGYYEDE-LAWKIIIDGVGKQGLVEAFYELFNVMEKNGCKFSSQTYSLLIEG 910
>sp|O04491|PPR26_ARATH Putative pentatricopeptide repeat-containing protein At1g09680
OS=Arabidopsis thaliana GN=At1g09680 PE=3 SV=1
Length = 607
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 80/194 (41%), Gaps = 4/194 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
+ + C+ +++D + E+ P + N L++ C + L E ++ M +
Sbjct: 247 MNKFCKEGNISDAQKVFDEITKRSLQPTVVSFNTLINGYCKVGNLDEGFRLKHQMEKSRT 306
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD+ +YS +I A+ K + A + EM GL+P + + N E+
Sbjct: 307 RPDVFTYSALINALCKENKMDGAHGLFDEMC-KRGLIPNDVIFTTLIHGHSRNGEIDLMK 365
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
E + + KG Y +V G + + + A V GM RG P +++G
Sbjct: 366 ESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGF 425
Query: 323 AGVGEWKLATVVRQ 336
G+ + A +R+
Sbjct: 426 CRGGDVETALEIRK 439
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 53/242 (21%), Positives = 92/242 (38%), Gaps = 2/242 (0%)
Query: 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS 152
+ R+RP + L L + + A + + G +P I L R +
Sbjct: 303 KSRTRPDVFTYSALINALCKENKMDGAHGLFDEMCKRGLIPNDVIFTTLIHGH-SRNGEI 361
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ + +M S G PD N LV+ C LV A ++ GM PD +Y+ +
Sbjct: 362 DLMKESYQKMLSKGLQPDIVLYNTLVNGFCKNGDLVAARNIVDGMIRRGLRPDKITYTTL 421
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I A+E+ KEM N + R G V + R + + E L R G
Sbjct: 422 IDGFCRGGDVETALEIRKEMDQNGIELDRVGFSALVCGMCKEGRVIDAERALREML-RAG 480
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
Y ++++ + + K + M G +P + ++ GL +G+ K A
Sbjct: 481 IKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLCKLGQMKNAD 540
Query: 333 VV 334
++
Sbjct: 541 ML 542
Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 1/91 (1%)
Query: 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182
L+ LR+G P ++ A+ ++ +Q+ +L EM+S G+ P T N L++ LC
Sbjct: 473 LREMLRAGIKPDDVTYTMMMDAFC-KKGDAQTGFKLLKEMQSDGHVPSVVTYNVLLNGLC 531
Query: 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213
+ Q+ A +L M + VPD +Y+ ++
Sbjct: 532 KLGQMKNADMLLDAMLNIGVVPDDITYNTLL 562
Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 43/182 (23%), Positives = 73/182 (40%), Gaps = 5/182 (2%)
Query: 55 GSFEEACQN---PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYDYLLSYTL 110
G F+E C+ PN F + + R ID M ES+ + + +P I L
Sbjct: 331 GLFDEMCKRGLIPNDVIFTTLIHGHSRNGEIDLMKESYQKMLSKGLQPDIVLYNTLVNGF 390
Query: 111 QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170
L A I+ +R G P L + R ++ +I EM G D
Sbjct: 391 CKNGDLVAARNIVDGMIRRGLRPDKITYTTLIDGFC-RGGDVETALEIRKEMDQNGIELD 449
Query: 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
+ LV +C ++++A + L+ M A PD +Y++++ A +++K
Sbjct: 450 RVGFSALVCGMCKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLK 509
Query: 231 EM 232
EM
Sbjct: 510 EM 511
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 46/94 (48%), Gaps = 4/94 (4%)
Query: 150 CQSQSVADI---LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
C+ V D L EM G PD T ++ + C K+LK M S VP +
Sbjct: 461 CKEGRVIDAERALREMLRAGIKPDDVTYTMMMDAFCKKGDAQTGFKLLKEMQSDGHVPSV 520
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+Y++++ + + +A +M+ + +LN+G++P
Sbjct: 521 VTYNVLLNGLCKLGQMKNA-DMLLDAMLNIGVVP 553
>sp|Q94JX6|PP391_ARATH Pentatricopeptide repeat-containing protein At5g18390,
mitochondrial OS=Arabidopsis thaliana GN=At5g18390 PE=2
SV=2
Length = 459
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 52/258 (20%), Positives = 102/258 (39%), Gaps = 35/258 (13%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A A+++R +R G P + +L + W + + + L EM G++P + L+
Sbjct: 201 AYALIRRMIRKGLKPDKRTYAILVNGWCSA-GKMKEAQEFLDEMSRRGFNPPARGRDLLI 259
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK-------- 230
L L A +++ M+ VPD+++++I+I A+S + + +EM
Sbjct: 260 EGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGEVEFCIEMYYTACKLGLC 319
Query: 231 -EMVLNMGLMPRQGMVIKVAAALR-------------------------ANREMWKAVEM 264
++ L+P + K+ A R N A
Sbjct: 320 VDIDTYKTLIPAVSKIGKIDEAFRLLNNCVEDGHKPFPSLYAPIIKGMCRNGMFDDAFSF 379
Query: 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324
++ K P Y +++ C +++ A ++ MTE G +P + V +GL
Sbjct: 380 FSDMKVKAHPPNRPVYTMLITMCGRGGKFVDAANYLVEMTEMGLVPISRCFDMVTDGLKN 439
Query: 325 VGEWKLATVVRQRFAELK 342
G+ LA + Q +L+
Sbjct: 440 GGKHDLAMRIEQLEVQLR 457
Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 83/176 (47%), Gaps = 2/176 (1%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM-SSAECVPDLESYSI 211
+S+ IL +MK + T +++ + +A ++ G+ + C ++ Y+
Sbjct: 128 ESMWKILKQMKDLSLDISGETLCFIIEQYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNS 187
Query: 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271
++ A+ + + A +++ M+ GL P + + + +M +A E ++ + R+
Sbjct: 188 LLHALCDVKMFHGAYALIRRMI-RKGLKPDKRTYAILVNGWCSAGKMKEAQEFLDEMSRR 246
Query: 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G +G ++++EG L A + V MT+ GF+P I+ ++E ++ GE
Sbjct: 247 GFNPPARGRDLLIEGLLNAGYLESAKEMVSKMTKGGFVPDIQTFNILIEAISKSGE 302
Score = 36.6 bits (83), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 51/232 (21%), Positives = 91/232 (39%), Gaps = 21/232 (9%)
Query: 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER--RCQSQSVADI 158
A +++++ + +HP +R+L S +RL ++S ++ R R S+S D
Sbjct: 50 AINHVVNIVRREIHP--------ERSLNS-------LRLPVTSEFVFRVLRATSRSSNDS 94
Query: 159 L----LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
L + Y P L SL + + K+LK M E+ +I
Sbjct: 95 LRFFNWARSNPSYTPTSMEYEELAKSLASHKKYESMWKILKQMKDLSLDISGETLCFIIE 154
Query: 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274
+ AVE+ + +G + + AL + A +I + RKG
Sbjct: 155 QYGKNGHVDQAVELFNGVPKTLGCQQTVDVYNSLLHALCDVKMFHGAYALIRRMIRKGLK 214
Query: 275 IGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
+ Y ++V G + A + + M+ RGF P + R ++EGL G
Sbjct: 215 PDKRTYAILVNGWCSAGKMKEAQEFLDEMSRRGFNPPARGRDLLIEGLLNAG 266
>sp|P0C7R3|PP106_ARATH Pentatricopeptide repeat-containing protein At1g64583,
mitochondrial OS=Arabidopsis thaliana GN=At1g64583 PE=2
SV=1
Length = 512
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 77/175 (44%), Gaps = 1/175 (0%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
++L EM+ G D T N L++ LC + +AA++L+ M PD+ +++ +I
Sbjct: 197 ELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRDMMKRSINPDVVTFTALIDVF 256
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
++A E+ KEM+ + + P + L + ++ A + + + KGC
Sbjct: 257 VKQGNLDEAQELYKEMIQS-SVDPNNVTYNSIINGLCMHGRLYDAKKTFDLMASKGCFPN 315
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + R K M+ GF I ++ G VG+ ++A
Sbjct: 316 VVTYNTLISGFCKFRMVDEGMKLFQRMSCEGFNADIFTYNTLIHGYCQVGKLRVA 370
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/212 (20%), Positives = 89/212 (41%), Gaps = 12/212 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD----ILLEMKSIGYHPDC 171
L AL++L + ++ G P ++ + L C + D ++L +KS GY P+
Sbjct: 122 LSFALSVLGKMMKLGYEP----SIVTFGSLLHGFCLVNRIGDAFSLVILMVKS-GYEPNV 176
Query: 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231
N L+ LC +L A ++L M D+ +Y+ ++ + + + +DA M+++
Sbjct: 177 VVYNTLIDGLCKNGELNIALELLNEMEKKGLGADVVTYNTLLTGLCYSGRWSDAARMLRD 236
Query: 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG-CLEC 290
M + + P + + +A E+ + + + Y ++ G C+
Sbjct: 237 M-MKRSINPDVVTFTALIDVFVKQGNLDEAQELYKEMIQSSVDPNNVTYNSIINGLCMHG 295
Query: 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
R Y A KT M +G P + ++ G
Sbjct: 296 RLYD-AKKTFDLMASKGCFPNVVTYNTLISGF 326
>sp|Q9LVQ5|PP432_ARATH Pentatricopeptide repeat-containing protein At5g55840
OS=Arabidopsis thaliana GN=At5g55840 PE=2 SV=2
Length = 1096
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 50/214 (23%), Positives = 93/214 (43%), Gaps = 4/214 (1%)
Query: 122 ILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
++Q+ +SG P + +L W ++ + ++ ++L MKS G D T N L+
Sbjct: 215 LMQKMEKSGYAPTIVTYNTVLH--WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHD 272
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC +++ + +L+ M P+ +Y+ +I S K A +++ EM L+ GL P
Sbjct: 273 LCRSNRIAKGYLLLRDMRKRMIHPNEVTYNTLINGFSNEGKVLIASQLLNEM-LSFGLSP 331
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ + +A++M +E KG Y V+++G + E+ LA
Sbjct: 332 NHVTFNALIDGHISEGNFKEALKMFYMMEAKGLTPSEVSYGVLLDGLCKNAEFDLARGFY 391
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M M G +++GL G A V+
Sbjct: 392 MRMKRNGVCVGRITYTGMIDGLCKNGFLDEAVVL 425
Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM +G+HP T L+ LC L EA K LK + + D Y+ ++ AM +
Sbjct: 568 EMTKVGHHPTFFTYGSLLKGLCKGGHLREAEKFLKSLHAVPAAVDTVMYNTLLTAMCKSG 627
Query: 221 KTNDAVEMMKEMV 233
AV + EMV
Sbjct: 628 NLAKAVSLFGEMV 640
Score = 37.0 bits (84), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/82 (20%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M ++G+ PD T N ++ + ++ + +L M + P+L +Y+I++ S +
Sbjct: 709 QMDNLGHTPDIVTTNAMIDGYSRMGKIEKTNDLLPEMGNQNGGPNLTTYNILLHGYSKRK 768
Query: 221 KTNDAVEMMKEMVLNMGLMPRQ 242
+ + + + ++LN G++P +
Sbjct: 769 DVSTSFLLYRSIILN-GILPDK 789
Score = 35.4 bits (80), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 41/204 (20%), Positives = 81/204 (39%), Gaps = 6/204 (2%)
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
C P + +L +L R Q +I M G++P TCN ++ S+ + V
Sbjct: 119 CNSNPSVYDILIRVYL-REGMIQDSLEIFRLMGLYGFNPSVYTCNAILGSVVKSGEDVSV 177
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
LK M + PD+ +++I+I + + +M++M G P V
Sbjct: 178 WSFLKEMLKRKICPDVATFNILINVLCAEGSFEKSSYLMQKME-KSGYAPTIVTYNTVLH 236
Query: 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM--GMTERGF 308
A+E+++ ++ KG Y +++ CR +A ++ M +R
Sbjct: 237 WYCKKGRFKAAIELLDHMKSKGVDADVCTYNMLIHDL--CRSNRIAKGYLLLRDMRKRMI 294
Query: 309 IPYIKVRQKVVEGLAGVGEWKLAT 332
P ++ G + G+ +A+
Sbjct: 295 HPNEVTYNTLINGFSNEGKVLIAS 318
Score = 35.0 bits (79), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 38/177 (21%), Positives = 74/177 (41%), Gaps = 1/177 (0%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L R + Q +L EM G P+ L++ LC + + A V + M + + P
Sbjct: 869 LNRNHRFQESRMVLHEMSKQGISPESRKYIGLINGLCRVGDIKTAFVVKEEMIAHKICPP 928
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
+ S ++ A++ K ++A +++ M L M L+P + N + +A+E+
Sbjct: 929 NVAESAMVRALAKCGKADEATLLLRFM-LKMKLVPTIASFTTLMHLCCKNGNVIEALELR 987
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
+ G + Y V++ G + LA + M GF+ + ++ GL
Sbjct: 988 VVMSNCGLKLDLVSYNVLITGLCAKGDMALAFELYEEMKGDGFLANATTYKALIRGL 1044
>sp|Q9LSQ2|PP239_ARATH Putative pentatricopeptide repeat-containing protein At3g16890,
mitochondrial OS=Arabidopsis thaliana GN=PPR40 PE=3 SV=1
Length = 659
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 67/154 (43%), Gaps = 4/154 (2%)
Query: 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
+L++ L G P V L+++ L R + + D EM G P+ T N L+
Sbjct: 481 GVLEKLLVHGFKPDVITFSLIINC--LCRAKEIKDAFDCFKEMLEWGIEPNEITYNILIR 538
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
S C+ + K+ M PDL +Y+ I + RK A E++K M L +GL
Sbjct: 539 SCCSTGDTDRSVKLFAKMKENGLSPDLYAYNATIQSFCKMRKVKKAEELLKTM-LRIGLK 597
Query: 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273
P + AL + +A EM +ER GC
Sbjct: 598 PDNFTYSTLIKALSESGRESEAREMFSSIERHGC 631
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 70/151 (46%), Gaps = 3/151 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+S G PD T N L+ +C + EA +++K M P++ +Y+I+I A
Sbjct: 205 QMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQMEQEGNRPNVFTYTILIDGFLIAG 264
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ ++A++ + EM+ L P + + + KA E++ K + GY
Sbjct: 265 RVDEALKQL-EMMRVRKLNPNEATIRTFVHGIFRCLPPCKAFEVLVGFMEKDSNLQRVGY 323
Query: 281 EVVVEGCLECREYIL-AGKTVMGMTERGFIP 310
+ V+ CL G+ + + ERG+IP
Sbjct: 324 DAVLY-CLSNNSMAKETGQFLRKIGERGYIP 353
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 75/192 (39%), Gaps = 13/192 (6%)
Query: 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
L ++ L ++ GY PD T N +S L LVE ++ G S P
Sbjct: 330 LSNNSMAKETGQFLRKIGERGYIPDSSTFNAAMSCLLKGHDLVETCRIFDGFVSRGVKPG 389
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
Y +++ A+ A++ ++ +K+M ++ GL+ V L R + A +
Sbjct: 390 FNGYLVLVQALLNAQRFSEGDRYLKQMGVD-GLLSSVYSYNAVIDCLCKARRIENAAMFL 448
Query: 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAG--KTVMGMTER----GFIPYIKVRQKVV 319
++ +G + + G Y + G K V G+ E+ GF P + ++
Sbjct: 449 TEMQDRGISPNLVTFNTFLSG------YSVRGDVKKVHGVLEKLLVHGFKPDVITFSLII 502
Query: 320 EGLAGVGEWKLA 331
L E K A
Sbjct: 503 NCLCRAKEIKDA 514
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 34/174 (19%), Positives = 74/174 (42%), Gaps = 1/174 (0%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
++ A L EM+ G P+ T N +S + + VL+ + PD+ ++S++
Sbjct: 442 ENAAMFLTEMQDRGISPNLVTFNTFLSGYSVRGDVKKVHGVLEKLLVHGFKPDVITFSLI 501
Query: 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
I + A++ DA + KEM L G+ P + + + + + ++V++ ++ G
Sbjct: 502 INCLCRAKEIKDAFDCFKEM-LEWGIEPNEITYNILIRSCCSTGDTDRSVKLFAKMKENG 560
Query: 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
Y ++ + R+ A + + M G P +++ L+ G
Sbjct: 561 LSPDLYAYNATIQSFCKMRKVKKAEELLKTMLRIGLKPDNFTYSTLIKALSESG 614
Score = 39.7 bits (91), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 56/118 (47%), Gaps = 1/118 (0%)
Query: 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174
PL L++ +L+ SG ++ +L +W R ++ D+ ++ +G P
Sbjct: 125 PLLLSMELLKEIRDSGYRISDELMCVLIGSW-GRLGLAKYCNDVFAQISFLGMKPSTRLY 183
Query: 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
N ++ +L + L A + M S C PD +Y+I+I + ++A+ ++K+M
Sbjct: 184 NAVIDALVKSNSLDLAYLKFQQMRSDGCKPDRFTYNILIHGVCKKGVVDEAIRLVKQM 241
>sp|O04504|PPR27_ARATH Pentatricopeptide repeat-containing protein At1g09820
OS=Arabidopsis thaliana GN=At1g09820 PE=2 SV=1
Length = 606
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 76/177 (42%), Gaps = 2/177 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M S G P+ T N L++ C D L EA + + VP Y+++I A
Sbjct: 356 KMVSAGVQPNLITYNALINGFCKNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLG 415
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +D + +EM G++P G + A L N + A ++ + L KG P +
Sbjct: 416 KIDDGFALKEEMERE-GIVPDVGTYNCLIAGLCRNGNIEAAKKLFDQLTSKGLP-DLVTF 473
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337
+++EG E A + M++ G P V++G G K AT +R +
Sbjct: 474 HILMEGYCRKGESRKAAMLLKEMSKMGLKPRHLTYNIVMKGYCKEGNLKAATNMRTQ 530
Score = 37.7 bits (86), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 66/339 (19%), Positives = 134/339 (39%), Gaps = 35/339 (10%)
Query: 18 CLLQFSSLRSMSSLR-TLEETVR---AAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNF 73
CL +S L S + +LE T + + +AK Y +I L F + S
Sbjct: 84 CLRYYSWLVKNSDISVSLELTFKLLHSLANAKRYSKIRSFLDGFVRNGSDHQVHSIFHAI 143
Query: 74 PQNHRI---KVIDEMLESFIPLRPRSRPKIAYDYL-----LSYTLQSLHPLPLALAILQR 125
+ +I +ML + SR ++ ++ Y L +L PL +A+L+
Sbjct: 144 SMCDNVCVNSIIADML--VLAYANNSRFELGFEAFKRSGYYGYKLSALSCKPLMIALLKE 201
Query: 126 TLRSGCVPVP---------QIRLLLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGT 173
RS V Q + + + C++ D++ +MK G P+ +
Sbjct: 202 N-RSADVEYVYKEMIRRKIQPNVFTFNVVINALCKTGKMNKARDVMEDMKVYGCSPNVVS 260
Query: 174 CNYLVSSLCAID---QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230
N L+ C + ++ +A VLK M + P+L +++I+I ++++ K
Sbjct: 261 YNTLIDGYCKLGGNGKMYKADAVLKEMVENDVSPNLTTFNILIDGFWKDDNLPGSMKVFK 320
Query: 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290
EM L+ + P + L ++ +A+ M + + G Y ++ G C
Sbjct: 321 EM-LDQDVKPNVISYNSLINGLCNGGKISEAISMRDKMVSAGVQPNLITYNALINGF--C 377
Query: 291 REYILAGKTVM--GMTERGFIPYIKVRQKVVEGLAGVGE 327
+ +L M + +G +P ++ +++ +G+
Sbjct: 378 KNDMLKEALDMFGSVKGQGAVPTTRMYNMLIDAYCKLGK 416
>sp|Q84J71|PP161_ARATH Pentatricopeptide repeat-containing protein At2g17670
OS=Arabidopsis thaliana GN=At2g17670 PE=2 SV=1
Length = 463
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 34/149 (22%), Positives = 68/149 (45%), Gaps = 4/149 (2%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202
++ C S+++ + ++ ++ + G+ PDC N ++ C + + EA V K M
Sbjct: 237 IDNVCNSKNLREAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGV 296
Query: 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262
PD +Y+ +I +S A + +A +K MV + G P + + E A+
Sbjct: 297 EPDQITYNTLIFGLSKAGRVEEARMYLKTMV-DAGYEPDTATYTSLMNGMCRKGESLGAL 355
Query: 263 EMIEFLERKGCPIGFQGYEVVVEGCLECR 291
++E +E +GC Y ++ G + R
Sbjct: 356 SLLEEMEARGCAPNDCTYNTLLHGLCKAR 384
Score = 37.7 bits (86), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 38/188 (20%), Positives = 75/188 (39%)
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
+LLS A +V +L M + G PD T + V SLC ++ EA ++K ++
Sbjct: 127 ILLSHACRAPDSSISNVHRVLNLMVNNGLEPDQVTTDIAVRSLCETGRVDEAKDLMKELT 186
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258
PD +Y+ ++ + + + E + EM + + P + + ++ +
Sbjct: 187 EKHSPPDTYTYNFLLKHLCKCKDLHVVYEFVDEMRDDFDVKPDLVSFTILIDNVCNSKNL 246
Query: 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318
+A+ ++ L G Y +++G + A M E G P +
Sbjct: 247 REAMYLVSKLGNAGFKPDCFLYNTIMKGFCTLSKGSEAVGVYKKMKEEGVEPDQITYNTL 306
Query: 319 VEGLAGVG 326
+ GL+ G
Sbjct: 307 IFGLSKAG 314
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 53/109 (48%), Gaps = 1/109 (0%)
Query: 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218
L M GY PD T L++ +C + + A +L+ M + C P+ +Y+ ++ +
Sbjct: 323 LKTMVDAGYEPDTATYTSLMNGMCRKGESLGALSLLEEMEARGCAPNDCTYNTLLHGLCK 382
Query: 219 ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
AR + +E+ EM+ + G+ + +L + ++ +A E+ ++
Sbjct: 383 ARLMDKGMELY-EMMKSSGVKLESNGYATLVRSLVKSGKVAEAYEVFDY 430
>sp|O65567|PP342_ARATH Pentatricopeptide repeat-containing protein At4g30825,
chloroplastic OS=Arabidopsis thaliana GN=At4g30825 PE=2
SV=2
Length = 904
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 11/229 (4%)
Query: 50 IPELLGSFEEACQ---NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD 103
+ EL G+FEE + PN +F L + + K ++E+ + R I+Y+
Sbjct: 680 LDELSGTFEEMIRYGFTPNTVTFNVLLDVYGKAKLFKKVNELF--LLAKRHGVVDVISYN 737
Query: 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK 163
+++ ++ ++ AI V + LL + ++ Q + IL MK
Sbjct: 738 TIIAAYGKNKDYTNMSSAIKNMQFDGFSVSLEAYNTLLDAYGKDK--QMEKFRSILKRMK 795
Query: 164 SIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223
PD T N +++ + E A VLK + + PDL SY+ +I A
Sbjct: 796 KSTSGPDHYTYNIMINIYGEQGWIDEVADVLKELKESGLGPDLCSYNTLIKAYGIGGMVE 855
Query: 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
+AV ++KEM ++P + + ALR N E +A++ ++++ G
Sbjct: 856 EAVGLVKEM-RGRNIIPDKVTYTNLVTALRRNDEFLEAIKWSLWMKQMG 903
>sp|Q9SUD8|PP340_ARATH Pentatricopeptide repeat-containing protein At4g28010
OS=Arabidopsis thaliana GN=At4g28010 PE=2 SV=1
Length = 704
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 69/296 (23%), Positives = 120/296 (40%), Gaps = 25/296 (8%)
Query: 49 QIPELLGSFEEACQNPNPFSFLSNF-------PQNHRI--KVIDEMLES--FIPLRPRSR 97
Q+ + F++A + + +F N +NH + +MLE+ FI
Sbjct: 53 QLKNAVSVFQQAVDSGSSLAFAGNNLMAKLVRSRNHELAFSFYRKMLETDTFINF----- 107
Query: 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVA 156
++ LL +Q + A +L L+ G V +LL L R +
Sbjct: 108 --VSLSGLLECYVQ-MRKTGFAFGVLALMLKRGFAFNVYNHNILLKG--LCRNLECGKAV 162
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+L EM+ PD + N ++ C +L +A ++ M + C L ++ I+I A
Sbjct: 163 SLLREMRRNSLMPDVFSYNTVIRGFCEGKELEKALELANEMKGSGCSWSLVTWGILIDAF 222
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPI 275
A K ++A+ +KEM MGL + + E+ + + E LER P
Sbjct: 223 CKAGKMDEAMGFLKEMKF-MGLEADLVVYTSLIRGFCDCGELDRGKALFDEVLERGDSPC 281
Query: 276 GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
Y ++ G + + A + M ERG P + +++GL GVG+ K A
Sbjct: 282 AIT-YNTLIRGFCKLGQLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEA 336
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/127 (29%), Positives = 61/127 (48%), Gaps = 10/127 (7%)
Query: 146 LERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM--SSA 200
+ + C+ VAD I+ MK PD T N L+ LCA L EA+K+L M S+
Sbjct: 359 INKLCKDGLVADAVEIVELMKKRRTRPDNITYNILLGGLCAKGDLDEASKLLYLMLKDSS 418
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---- 256
PD+ SY+ +I + + + A+++ +V +G R I + + L+A
Sbjct: 419 YTDPDVISYNALIHGLCKENRLHQALDIYDLLVEKLGAGDRVTTNILLNSTLKAGDVNKA 478
Query: 257 -EMWKAV 262
E+WK +
Sbjct: 479 MELWKQI 485
Score = 34.3 bits (77), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 40/82 (48%)
Query: 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210
Q + ++I M G P+ T L+ LC + + EA ++L M + P+ +Y+
Sbjct: 297 QLKEASEIFEFMIERGVRPNVYTYTGLIDGLCGVGKTKEALQLLNLMIEKDEEPNAVTYN 356
Query: 211 IVIGAMSTARKTNDAVEMMKEM 232
I+I + DAVE+++ M
Sbjct: 357 IIINKLCKDGLVADAVEIVELM 378
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 60/148 (40%), Gaps = 12/148 (8%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ PD + N ++ + A +L GMS A PDL +YS +I
Sbjct: 554 EMQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
++A+ +MV + G P + V + E K E+++ L K
Sbjct: 614 YLDEAISFFDKMV-DSGFEPDAHICDSVLKYCISQGETDKLTELVKKLVDK--------- 663
Query: 281 EVVVEGCLECR--EYILAGKTVMGMTER 306
++V++ L C +Y+ M + +R
Sbjct: 664 DIVLDKELTCTVMDYMCNSSANMDLAKR 691
Score = 32.0 bits (71), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 50/239 (20%), Positives = 103/239 (43%), Gaps = 10/239 (4%)
Query: 93 RPRSRP-KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI---RLLLSSAWLER 148
+ R+RP I Y+ LL L + L A +L L+ P + L+ E
Sbjct: 380 KRRTRPDNITYNILLG-GLCAKGDLDEASKLLYLMLKDSSYTDPDVISYNALIHGLCKEN 438
Query: 149 RC-QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R Q+ + D+L+E G D T N L++S + +A ++ K +S ++ V + +
Sbjct: 439 RLHQALDIYDLLVEKLGAG---DRVTTNILLNSTLKAGDVNKAMELWKQISDSKIVRNSD 495
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y+ +I N A ++ +M ++ L P + ++L + +A + E
Sbjct: 496 TYTAMIDGFCKTGMLNVAKGLLCKMRVSE-LQPSVFDYNCLLSSLCKEGSLDQAWRLFEE 554
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
++R + ++++G L+ + A ++GM+ G P + K++ +G
Sbjct: 555 MQRDNNFPDVVSFNIMIDGSLKAGDIKSAESLLVGMSRAGLSPDLFTYSKLINRFLKLG 613
>sp|Q9LUR2|PP238_ARATH Putative pentatricopeptide repeat-containing protein At3g16710,
mitochondrial OS=Arabidopsis thaliana GN=At3g16710 PE=3
SV=1
Length = 507
Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 53/223 (23%), Positives = 88/223 (39%), Gaps = 12/223 (5%)
Query: 111 QSLHPLPL--ALAILQRTLRSGCVPVPQI----RLLLSSAWLERRCQSQSVADILLEMKS 164
LH L AL + R + S P+P I RLL A + R V + +M+
Sbjct: 57 NGLHNLQFNDALDLFTRMVHSR--PLPSIIDFTRLLSVIAKMNR---YDVVISLFEQMQI 111
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
+G P TCN ++ +C Q A+ L M PDL +++ ++ + D
Sbjct: 112 LGIPPLLCTCNIVMHCVCLSSQPCRASCFLGKMMKLGFEPDLVTFTSLLNGYCHWNRIED 171
Query: 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
A+ + + +L MG P + L NR + AVE+ + G Y +V
Sbjct: 172 AIALFDQ-ILGMGFKPNVVTYTTLIRCLCKNRHLNHAVELFNQMGTNGSRPNVVTYNALV 230
Query: 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
G E + A + M +R P + +++ VG+
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGK 273
Score = 48.1 bits (113), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 95/225 (42%), Gaps = 5/225 (2%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+A+ + L G P L + R + +V ++ +M + G P+ T N LV
Sbjct: 172 AIALFDQILGMGFKPNVVTYTTLIRCLCKNRHLNHAV-ELFNQMGTNGSRPNVVTYNALV 230
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+ LC I + +AA +L+ M P++ +++ +I A K +A E+ M+ M +
Sbjct: 231 TGLCEIGRWGDAAWLLRDMMKRRIEPNVITFTALIDAFVKVGKLMEAKELYNVMI-QMSV 289
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298
P + L + +A +M +ER GC Y ++ G + + K
Sbjct: 290 YPDVFTYGSLINGLCMYGLLDEARQMFYLMERNGCYPNEVIYTTLIHGFCKSKRVEDGMK 349
Query: 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343
M+++G + +++G VG V ++ F ++ S
Sbjct: 350 IFYEMSQKGVVANTITYTVLIQGYCLVGR---PDVAQEVFNQMSS 391
Score = 40.0 bits (92), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 18/191 (9%)
Query: 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAI 184
R+GC P I L + C+S+ V D I EM G + T L+ C +
Sbjct: 321 RNGCYPNEVIYTTLIHGF----CKSKRVEDGMKIFYEMSQKGVVANTITYTVLIQGYCLV 376
Query: 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV---EMMKEMVLNMGLMPR 241
+ A +V MSS PD+ +Y++++ + K A+ E M++ +++ ++
Sbjct: 377 GRPDVAQEVFNQMSSRRAPPDIRTYNVLLDGLCCNGKVEKALMIFEYMRKREMDINIVTY 436
Query: 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKT 299
++I+ L ++ A ++ L KG Y ++ G CR ++ A
Sbjct: 437 T-IIIQGMCKL---GKVEDAFDLFCSLFSKGMKPNVITYTTMISG--FCRRGLIHEADSL 490
Query: 300 VMGMTERGFIP 310
M E GF+P
Sbjct: 491 FKKMKEDGFLP 501
>sp|Q8GZA6|PP113_ARATH Pentatricopeptide repeat-containing protein At1g71210
OS=Arabidopsis thaliana GN=At1g71210 PE=2 SV=1
Length = 879
Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 37/159 (23%), Positives = 77/159 (48%), Gaps = 7/159 (4%)
Query: 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND 224
IG+ P + NYL+ +LCA + + +A VLKG +++S + A+ K
Sbjct: 421 IGFAPTAMSYNYLIHTLCANESVEQAYDVLKGAIDRGHFLGGKTFSTLTNALCWKGKP-- 478
Query: 225 AVEMMKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+M +E+V+ L+P++ K+ +AL ++ A+ + E + G F+ +
Sbjct: 479 --DMARELVIAAAERDLLPKRIAGCKIISALCDVGKVEDALMINELFNKSGVDTSFKMFT 536
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
++ G + +A K ++ M E+G+ P + + V++
Sbjct: 537 SLIYGSITLMRGDIAAKLIIRMQEKGYTPTRSLYRNVIQ 575
>sp|Q9SXD8|PPR90_ARATH Pentatricopeptide repeat-containing protein At1g62590
OS=Arabidopsis thaliana GN=At1g62590 PE=2 SV=1
Length = 634
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/118 (24%), Positives = 58/118 (49%), Gaps = 1/118 (0%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD T N LV+ C D+L +A ++ + M S +C PD+ +Y+ +I +++ D E+
Sbjct: 363 PDIFTYNSLVNGFCMHDRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTEL 422
Query: 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+EM + GL+ + L + + A ++ + + G P Y ++++G
Sbjct: 423 FREMS-HRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLDG 479
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/192 (20%), Positives = 87/192 (45%), Gaps = 4/192 (2%)
Query: 139 LLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+ + V D L EM++ G P+ T + L+S LC+ + +A+++L
Sbjct: 260 VVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGRWSDASQLLS 319
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M + P+L +++ +I A K +A ++ +M+ + P + +
Sbjct: 320 DMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMI-KRSIDPDIFTYNSLVNGFCMH 378
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315
+ KA +M EF+ K C Y +++G + + + M+ RG +
Sbjct: 379 DRLDKAKQMFEFMVSKDCFPDVVTYNTLIKGFCKSKRVEDGTELFREMSHRGLVGDTVTY 438
Query: 316 QKVVEGLAGVGE 327
+++GL G+
Sbjct: 439 TTLIQGLFHDGD 450
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 60/120 (50%), Gaps = 7/120 (5%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCG 172
+ LALA+L + ++ G P ++ S+ L C + ++D ++ +M +GY PD
Sbjct: 136 ISLALALLGKMMKLGYEP----SIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T L+ L ++ EA ++ M C P+L +Y +V+ + T+ A+ ++ +M
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNKM 251
Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 52/114 (45%), Gaps = 1/114 (0%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T N L++ C Q+ A +L M P + + S ++ ++ +DAV ++ +M
Sbjct: 122 TYNILINCFCRRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQM 181
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
V MG P + L + + +AV +++ + ++GC Y VVV G
Sbjct: 182 V-EMGYRPDTITFTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYGVVVNG 234
Score = 37.0 bits (84), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 38/195 (19%), Positives = 74/195 (37%), Gaps = 1/195 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q +L +M +GY P T + L++ C ++ +A ++ M PD
Sbjct: 132 RRSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTI 191
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ +I + K ++AV ++ MV G P V L + A+ ++
Sbjct: 192 TFTTLIHGLFLHNKASEAVALVDRMV-QRGCQPNLVTYGVVVNGLCKRGDTDLALNLLNK 250
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E + +++ + R A M +G P + ++ L G
Sbjct: 251 MEAAKIEADVVIFNTIIDSLCKYRHVDDALNLFKEMETKGIRPNVVTYSSLISCLCSYGR 310
Query: 328 WKLATVVRQRFAELK 342
W A+ + E K
Sbjct: 311 WSDASQLLSDMIEKK 325
Score = 36.6 bits (83), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 54/115 (46%), Gaps = 1/115 (0%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+ +M S G PD T + L+ LC +L +A +V M +E D+ Y+ +I M
Sbjct: 457 VFKQMVSDGVPPDIMTYSILLDGLCNNGKLEKALEVFDYMQKSEIKLDIYIYTTMIEGMC 516
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272
A K +D ++ + L G+ P + + L + R + +A +++ ++ G
Sbjct: 517 KAGKVDDGWDLFCSLSLK-GVKPNVVTYNTMISGLCSKRLLQEAYALLKKMKEDG 570
Score = 34.7 bits (78), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 24/198 (12%)
Query: 47 YQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI----KVIDEMLESFIPLRPRSRPK 99
+ +LL E NPN +F + F + + K+ D+M++ I P
Sbjct: 311 WSDASQLLSDMIEKKINPNLVTFNALIDAFVKEGKFVEAEKLYDDMIKRSID------PD 364
Query: 100 I-AYDYLLSYTLQSLHP-LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157
I Y+ L++ +H L A + + + C P ++ + ++ C+S+ V D
Sbjct: 365 IFTYNSLVNGF--CMHDRLDKAKQMFEFMVSKDCFP----DVVTYNTLIKGFCKSKRVED 418
Query: 158 ---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214
+ EM G D T L+ L A KV K M S PD+ +YSI++
Sbjct: 419 GTELFREMSHRGLVGDTVTYTTLIQGLFHDGDCDNAQKVFKQMVSDGVPPDIMTYSILLD 478
Query: 215 AMSTARKTNDAVEMMKEM 232
+ K A+E+ M
Sbjct: 479 GLCNNGKLEKALEVFDYM 496
>sp|Q9SS81|PP221_ARATH Pentatricopeptide repeat-containing protein At3g09060
OS=Arabidopsis thaliana GN=At3g09060 PE=2 SV=1
Length = 687
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 57/258 (22%), Positives = 108/258 (41%), Gaps = 11/258 (4%)
Query: 82 IDE--MLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL 139
IDE M+ +P + + K Y + + L + AL ++Q SG + +
Sbjct: 375 IDEATMIWRLMPAKGYAADKTTYGIFI-HGLCVNGYVNKALGVMQEVESSG----GHLDV 429
Query: 140 LLSSAWLERRCQS---QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
++ ++ C+ + ++++ EM G + CN L+ L +L EA+ L+
Sbjct: 430 YAYASIIDCLCKKKRLEEASNLVKEMSKHGVELNSHVCNALIGGLIRDSRLGEASFFLRE 489
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M C P + SY+I+I + A K +A +KEM+ N G P + L +R
Sbjct: 490 MGKNGCRPTVVSYNILICGLCKAGKFGEASAFVKEMLEN-GWKPDLKTYSILLCGLCRDR 548
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
++ A+E+ + G + +++ G + A + M R +
Sbjct: 549 KIDLALELWHQFLQSGLETDVMMHNILIHGLCSVGKLDDAMTVMANMEHRNCTANLVTYN 608
Query: 317 KVVEGLAGVGEWKLATVV 334
++EG VG+ ATV+
Sbjct: 609 TLMEGFFKVGDSNRATVI 626
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 56/116 (48%), Gaps = 4/116 (3%)
Query: 119 ALAILQRTLRS--GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176
AL + +R +R GC P + L +A++E + Q V + ++ G P+ T N
Sbjct: 97 ALDVFKR-MREIFGCEPAIRSYNTLLNAFVEAK-QWVKVESLFAYFETAGVAPNLQTYNV 154
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ C + +A L M PD+ SYS VI ++ A K +DA+E+ EM
Sbjct: 155 LIKMSCKKKEFEKARGFLDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEM 210
Score = 40.0 bits (92), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 52/264 (19%), Positives = 106/264 (40%), Gaps = 9/264 (3%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
++R+ + A V+AK + ++ L FE A PN ++ + + K E F
Sbjct: 113 AIRSYNTLLNAFVEAKQWVKVESLFAYFETAGVAPNLQTYNVLIKMSCKKKEF-EKARGF 171
Query: 90 IPLRPRS--RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+ + +P + + L L AL + G P +L +L+
Sbjct: 172 LDWMWKEGFKPDVFSYSTVINDLAKAGKLDDALELFDEMSERGVAPDVTCYNILIDGFLK 231
Query: 148 RRCQSQSVA--DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205
+ ++ D LLE S+ +P+ T N ++S L ++ + K+ + M E D
Sbjct: 232 EKDHKTAMELWDRLLEDSSV--YPNVKTHNIMISGLSKCGRVDDCLKIWERMKQNEREKD 289
Query: 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265
L +YS +I + A + A + E+ + + R + + +++E+
Sbjct: 290 LYTYSSLIHGLCDAGNVDKAESVFNELDERKASIDVVTYNTMLGGFCRCGK-IKESLELW 348
Query: 266 EFLERKGCPIGFQGYEVVVEGCLE 289
+E K + Y ++++G LE
Sbjct: 349 RIMEHKN-SVNIVSYNILIKGLLE 371
>sp|Q9SZ20|PP339_ARATH Pentatricopeptide repeat-containing protein At4g26800
OS=Arabidopsis thaliana GN=At4g26800 PE=2 SV=2
Length = 514
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/227 (22%), Positives = 96/227 (42%), Gaps = 39/227 (17%)
Query: 139 LLLSSAWLERRCQSQSVA---DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195
+++ + ++ C+++ V ++L MK G P+ T + L++ LC +L +A + L
Sbjct: 193 VVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITGLCKSGRLADAERRLH 252
Query: 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255
M S + P++ ++S +I A + K + V+ + +M++ M + P + L +
Sbjct: 253 EMDSKKINPNVITFSALIDAYAKRGKLS-KVDSVYKMMIQMSIDPNVFTYSSLIYGLCMH 311
Query: 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC------------------------- 290
+ +A++M++ + KGC Y + G +
Sbjct: 312 NRVDEAIKMLDLMISKGCTPNVVTYSTLANGFFKSSRVDDGIKLLDDMPQRGVAANTVSC 371
Query: 291 ----REYILAGKT-----VMG-MTERGFIPYIKVRQKVVEGLAGVGE 327
+ Y AGK V G MT G IP I+ V+ GL GE
Sbjct: 372 NTLIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGE 418
Score = 35.4 bits (80), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 36/176 (20%), Positives = 73/176 (41%), Gaps = 12/176 (6%)
Query: 63 NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLA 119
NPN +F + + + ++ +D + + I + P + L Y L + + A
Sbjct: 260 NPNVITFSALIDAYAKRGKLSKVDSVYKMMIQMSID--PNVFTYSSLIYGLCMHNRVDEA 317
Query: 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNY 176
+ +L + GC P L++ + +S V D +L +M G + +CN
Sbjct: 318 IKMLDLMISKGCTPNVVTYSTLANGFF----KSSRVDDGIKLLDDMPQRGVAANTVSCNT 373
Query: 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
L+ ++ A V M+S +P++ SY+IV+ + + A+ + M
Sbjct: 374 LIKGYFQAGKIDLALGVFGYMTSNGLIPNIRSYNIVLAGLFANGEVEKALSRFEHM 429
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 35/161 (21%), Positives = 68/161 (42%), Gaps = 5/161 (3%)
Query: 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228
PD TCN LV+ C Q A L M PD+ + S ++ + DAV +
Sbjct: 121 PDLYTCNILVNCFCRCFQPSSALSYLGKMMKLGIEPDIVTASSLVNGFCLSNSIKDAVYV 180
Query: 229 MKEMVLNMGLMPRQGMVIK--VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286
+M MG+ ++ +V+ + L NR + A+E+++ ++ +G Y ++ G
Sbjct: 181 AGQME-KMGI--KRDVVVDTILIDTLCKNRLVVPALEVLKRMKDRGISPNVVTYSSLITG 237
Query: 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+ A + + M + P + +++ A G+
Sbjct: 238 LCKSGRLADAERRLHEMDSKKINPNVITFSALIDAYAKRGK 278
>sp|Q9SAJ5|PP133_ARATH Pentatricopeptide repeat-containing protein At1g79540
OS=Arabidopsis thaliana GN=At1g79540 PE=2 SV=1
Length = 780
Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 37/167 (22%), Positives = 71/167 (42%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T L+ L + +A K+ M+ P+ +Y+I+I +
Sbjct: 188 EMLKCNCSPNLYTFGILMDGLYKKGRTSDAQKMFDDMTGRGISPNRVTYTILISGLCQRG 247
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+DA ++ EM + G P + M +A E++ E+ G +G +GY
Sbjct: 248 SADDARKLFYEMQTS-GNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGLRGY 306
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+++G R Y A + M ++ P I + +++GL+ G+
Sbjct: 307 SSLIDGLFRARRYTQAFELYANMLKKNIKPDIILYTILIQGLSKAGK 353
Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 61/140 (43%), Gaps = 4/140 (2%)
Query: 150 CQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
CQ S D + EM++ G +PD N L+ C + ++VEA ++L+ V L
Sbjct: 244 CQRGSADDARKLFYEMQTSGNYPDSVAHNALLDGFCKLGRMVEAFELLRLFEKDGFVLGL 303
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
YS +I + AR+ A E+ M L + P + + L ++ A++++
Sbjct: 304 RGYSSLIDGLFRARRYTQAFELYANM-LKKNIKPDIILYTILIQGLSKAGKIEDALKLLS 362
Query: 267 FLERKGCPIGFQGYEVVVEG 286
+ KG Y V++
Sbjct: 363 SMPSKGISPDTYCYNAVIKA 382
Score = 33.5 bits (75), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 35/75 (46%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L M S G PD N ++ +LC L E + MS E PD +++I+I +M
Sbjct: 360 LLSSMPSKGISPDTYCYNAVIKALCGRGLLEEGRSLQLEMSETESFPDACTHTILICSMC 419
Query: 218 TARKTNDAVEMMKEM 232
+A E+ E+
Sbjct: 420 RNGLVREAEEIFTEI 434
>sp|Q9ZVX5|PP156_ARATH Pentatricopeptide repeat-containing protein At2g16880
OS=Arabidopsis thaliana GN=At2g16880 PE=2 SV=1
Length = 743
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/261 (21%), Positives = 114/261 (43%), Gaps = 14/261 (5%)
Query: 71 SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130
S+F + +V D+M++ + L ++ + Y L L+ AL +L+R +
Sbjct: 181 SSFSISSAREVFDDMVKIGVSLNVQTFNVLVNGYCLEGKLED------ALGMLERMVSEF 234
Query: 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
V + + ++ + + ++LL+MK G P+ T N LV C + L EA
Sbjct: 235 KVNPDNVTYNTILKAMSKKGRLSDLKELLLDMKKNGLVPNRVTYNNLVYGYCKLGSLKEA 294
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250
++++ M +PDL +Y+I+I + A + +E+M M ++ L P V+
Sbjct: 295 FQIVELMKQTNVLPDLCTYNILINGLCNAGSMREGLELMDAMK-SLKLQPD---VVTYNT 350
Query: 251 ALRANREMWKAVE---MIEFLERKGCPIGFQGYEVVVEG-CLECREYILAGKTVMGMTER 306
+ E+ ++E ++E +E G + + ++ C E + + K +
Sbjct: 351 LIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEKREAVTRKVKELVDMH 410
Query: 307 GFIPYIKVRQKVVEGLAGVGE 327
GF P I +++ VG+
Sbjct: 411 GFSPDIVTYHTLIKAYLKVGD 431
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 31/148 (20%), Positives = 62/148 (41%)
Query: 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
MKS+ PD T N L+ + +EA K+++ M + + +++I + + K
Sbjct: 336 MKSLKLQPDVVTYNTLIDGCFELGLSLEARKLMEQMENDGVKANQVTHNISLKWLCKEEK 395
Query: 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281
+KE+V G P + A ++ A+EM+ + +KG +
Sbjct: 396 REAVTRKVKELVDMHGFSPDIVTYHTLIKAYLKVGDLSGALEMMREMGQKGIKMNTITLN 455
Query: 282 VVVEGCLECREYILAGKTVMGMTERGFI 309
+++ + R+ A + +RGFI
Sbjct: 456 TILDALCKERKLDEAHNLLNSAHKRGFI 483
Score = 31.6 bits (70), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226
+ PD TCN L++ LC + + E A E D +Y+ +I A +K +A
Sbjct: 587 FKPDNYTCNILLNGLCK-EGMTEKALNFFNTLIEEREVDTVTYNTMISAFCKDKKLKEAY 645
Query: 227 EMMKEM 232
+++ EM
Sbjct: 646 DLLSEM 651
>sp|Q9LER0|PP381_ARATH Pentatricopeptide repeat-containing protein At5g14770,
mitochondrial OS=Arabidopsis thaliana GN=At5g14770 PE=2
SV=2
Length = 940
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/196 (24%), Positives = 84/196 (42%), Gaps = 4/196 (2%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
++ S+ + + +MKS G P +CN +V LC ++ EA +L M E P+L
Sbjct: 587 KQGDSEGILKLWDKMKSCGIKPSLMSCNIVVGMLCENGKMEEAIHILNQMMLMEIHPNLT 646
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+Y I + S+ K DA+ E +L+ G+ + + + A L KA ++
Sbjct: 647 TYRIFLDT-SSKHKRADAIFKTHETLLSYGIKLSRQVYNTLIATLCKLGMTKKAAMVMGD 705
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E +G + ++ G A T M E G P + ++ GL+ G
Sbjct: 706 MEARGFIPDTVTFNSLMHGYFVGSHVRKALSTYSVMMEAGISPNVATYNTIIRGLSDAG- 764
Query: 328 WKLATVVRQRFAELKS 343
L V + +E+KS
Sbjct: 765 --LIKEVDKWLSEMKS 778
Score = 39.7 bits (91), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 34/207 (16%), Positives = 79/207 (38%), Gaps = 36/207 (17%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193
+ ++ L+ + L ++ + +M G+ PD T + +++ LC +++E +
Sbjct: 224 ISELNLITHTILLSSYYNLHAIEEAYRDMVMSGFDPDVVTFSSIINRLCKGGKVLEGGLL 283
Query: 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253
L+ M P+ +Y+ ++ ++ A A+ + +MV+
Sbjct: 284 LREMEEMSVYPNHVTYTTLVDSLFKANIYRHALALYSQMVV------------------- 324
Query: 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313
+G P+ Y V+++G + + A KT + E +P +
Sbjct: 325 -----------------RGIPVDLVVYTVLMDGLFKAGDLREAEKTFKMLLEDNQVPNVV 367
Query: 314 VRQKVVEGLAGVGEWKLATVVRQRFAE 340
+V+GL G+ A + + E
Sbjct: 368 TYTALVDGLCKAGDLSSAEFIITQMLE 394
Score = 38.1 bits (87), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 38/80 (47%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
+ V L EMKS G PD T N L+S I + + + M + VP +Y+++
Sbjct: 767 KEVDKWLSEMKSRGMRPDDFTYNALISGQAKIGNMKGSMTIYCEMIADGLVPKTSTYNVL 826
Query: 213 IGAMSTARKTNDAVEMMKEM 232
I + K A E++KEM
Sbjct: 827 ISEFANVGKMLQARELLKEM 846
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 125 RTLRSGCV--PVPQIRL---LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179
RTL + C VP RL L+ + Q V+ I +M + G PD N L+
Sbjct: 81 RTLSAMCTFGVVPDSRLWNSLIHQFNVNGLVHDQ-VSLIYSKMIACGVSPDVFALNVLIH 139
Query: 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239
S C + +L A +L+ + D +Y+ VI + ++A + + EMV MG++
Sbjct: 140 SFCKVGRLSFAISLLRNRVIS---IDTVTYNTVISGLCEHGLADEAYQFLSEMV-KMGIL 195
Query: 240 P 240
P
Sbjct: 196 P 196
Score = 33.1 bits (74), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/104 (25%), Positives = 49/104 (47%), Gaps = 5/104 (4%)
Query: 134 VPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190
VP + + +A ++ C++ ++ I+ +M P+ T + +++ L EA
Sbjct: 363 VPNV--VTYTALVDGLCKAGDLSSAEFIITQMLEKSVIPNVVTYSSMINGYVKKGMLEEA 420
Query: 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234
+L+ M VP+ +Y VI + A K A+E+ KEM L
Sbjct: 421 VSLLRKMEDQNVVPNGFTYGTVIDGLFKAGKEEMAIELSKEMRL 464
>sp|Q9LQ15|PPR95_ARATH Pentatricopeptide repeat-containing protein At1g62914,
mitochondrial OS=Arabidopsis thaliana GN=At1g62914 PE=2
SV=1
Length = 528
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 80/175 (45%), Gaps = 5/175 (2%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM P+ T + L++ C +D+L EA ++L+ M +C+P++ +Y+ +I A+
Sbjct: 348 EMIKRSIDPNIFTYSSLINGFCMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAK 407
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ + +E+ +EM GL+ + R+ A + + + G Y
Sbjct: 408 RVDKGMELFREMS-QRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTY 466
Query: 281 EVVVEGCLECREYILA-GKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATV 333
++++G C+ LA V +R + P I ++EG+ G+WK+ +
Sbjct: 467 NILLDGL--CKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKWKMGGI 519
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/172 (20%), Positives = 68/172 (39%), Gaps = 1/172 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M +GY PD T N L++ C +++ +A ++ M PD +++ +I +
Sbjct: 138 KMMKLGYEPDIVTLNSLLNGFCHGNRISDAVALVDQMVEMGYKPDTVTFTTLIHGLFLHN 197
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K ++AV ++ MV G P V L + A+ ++ +E Y
Sbjct: 198 KASEAVALIDRMV-QRGCQPDLVTYGAVVNGLCKRGDTDLALNLLNKMEAAKIEANVVIY 256
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332
V++ + R A M +G P + ++ L G W A+
Sbjct: 257 STVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDAS 308
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 76/166 (45%), Gaps = 14/166 (8%)
Query: 63 NPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI-AYDYLLSYTLQSLH---P 115
+PN F++ ++ F R+ +MLE + +R P + Y+ L++ ++
Sbjct: 355 DPNIFTYSSLINGFCMLDRLGEAKQMLE--LMIRKDCLPNVVTYNTLINGFCKAKRVDKG 412
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+ L + QR L V L+ + R C + + + +M S+G HP+ T N
Sbjct: 413 MELFREMSQRGLVGNTVTYTT---LIHGFFQARDCDNAQM--VFKQMVSVGVHPNILTYN 467
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK 221
L+ LC +L +A V + + + PD+ +Y+I+I M A K
Sbjct: 468 ILLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGK 513
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/190 (20%), Positives = 82/190 (43%), Gaps = 4/190 (2%)
Query: 136 QIRLLLSSAWLERRCQSQSVADIL---LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192
+ +++ S ++ C+ + D L EM++ G P+ T + L+S LC + +A++
Sbjct: 250 EANVVIYSTVIDSLCKYRHEDDALNLFTEMENKGVRPNVITYSSLISCLCNYGRWSDASR 309
Query: 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252
+L M + P+L ++S +I A K A ++ +EM+ + P +
Sbjct: 310 LLSDMIERKINPNLVTFSALIDAFVKKGKLVKAEKLYEEMI-KRSIDPNIFTYSSLINGF 368
Query: 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312
+ +A +M+E + RK C Y ++ G + + + M++RG +
Sbjct: 369 CMLDRLGEAKQMLELMIRKDCLPNVVTYNTLINGFCKAKRVDKGMELFREMSQRGLVGNT 428
Query: 313 KVRQKVVEGL 322
++ G
Sbjct: 429 VTYTTLIHGF 438
Score = 36.2 bits (82), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 30/126 (23%), Positives = 57/126 (45%), Gaps = 1/126 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G + T N L++ C +L A +L M PD+ + + ++
Sbjct: 103 KMEILGISHNLYTYNILINCFCRCSRLSLALALLGKMMKLGYEPDIVTLNSLLNGFCHGN 162
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV MG P + L + + +AV +I+ + ++GC Y
Sbjct: 163 RISDAVALVDQMV-EMGYKPDTVTFTTLIHGLFLHNKASEAVALIDRMVQRGCQPDLVTY 221
Query: 281 EVVVEG 286
VV G
Sbjct: 222 GAVVNG 227
>sp|Q9ZU27|PPR76_ARATH Pentatricopeptide repeat-containing protein At1g51965,
mitochondrial OS=Arabidopsis thaliana GN=At1g51965 PE=2
SV=1
Length = 650
Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 3/171 (1%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ +L + G V + + SA L + Q + D+ +MK G PD T N L+
Sbjct: 426 AIEMLSKIHEKGVVTDTMMYNTVFSA-LGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Query: 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238
+S + ++ EA + + + ++C PD+ SY+ +I + ++A KEM GL
Sbjct: 485 ASFGRVGEVDEAINIFEELERSDCKPDIISYNSLINCLGKNGDVDEAHVRFKEMQ-EKGL 543
Query: 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
P + + A + E + KGC Y ++++ CLE
Sbjct: 544 NPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLD-CLE 593
Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 64/139 (46%), Gaps = 17/139 (12%)
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L A+L R S++ D+ E++ G+ D N L+ +L A D+ +A +V + M
Sbjct: 209 LLQAYLRSRDYSKAF-DVYCEIRRGGHKLDIFAYNMLLDAL-AKDE--KACQVFEDMKKR 264
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA------ALRA 254
C D +Y+I+I M K ++AV + EM+ +G+ + V L
Sbjct: 265 HCRRDEYTYTIMIRTMGRIGKCDEAVGLFNEMIT-------EGLTLNVVGYNTLMQVLAK 317
Query: 255 NREMWKAVEMIEFLERKGC 273
+ + KA+++ + GC
Sbjct: 318 GKMVDKAIQVFSRMVETGC 336
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/171 (21%), Positives = 78/171 (45%), Gaps = 15/171 (8%)
Query: 119 ALAILQRTLRSGCVPVPQ-----IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173
A+ + R + +GC P + LL++ L R D ++E+ + G
Sbjct: 324 AIQVFSRMVETGCRPNEYTYSLLLNLLVAEGQLVR-------LDGVVEISK--RYMTQGI 374
Query: 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233
+YLV +L + + EA ++ M S + +SY ++ ++ A KT +A+EM+ + +
Sbjct: 375 YSYLVRTLSKLGHVSEAHRLFCDMWSFPVKGERDSYMSMLESLCGAGKTIEAIEMLSK-I 433
Query: 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284
G++ M V +AL +++ ++ E +++ G Y +++
Sbjct: 434 HEKGVVTDTMMYNTVFSALGKLKQISHIHDLFEKMKKDGPSPDIFTYNILI 484
Score = 33.5 bits (75), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM+ G +PD T + L+ +++ A + + M C P++ +Y+I++ +
Sbjct: 537 EMQEKGLNPDVVTYSTLMECFGKTERVEMAYSLFEEMLVKGCQPNIVTYNILLDCLEKNG 596
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
+T +AV++ +M GL P
Sbjct: 597 RTAEAVDLYSKMK-QQGLTP 615
>sp|Q9FIT7|PP442_ARATH Pentatricopeptide repeat-containing protein At5g61990,
mitochondrial OS=Arabidopsis thaliana GN=At5g61990 PE=2
SV=1
Length = 974
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 16/199 (8%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSV---ADILLEMKSIGYHPDCGTCN 175
A A+ + SG +P Q ++ +E C+ ++V ++L+EMK T
Sbjct: 366 AKALFDGMIASGLIPQAQAY----ASLIEGYCREKNVRQGYELLVEMKKRNIVISPYTYG 421
Query: 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235
+V +C+ L A ++K M ++ C P++ Y+ +I + DA+ ++KEM
Sbjct: 422 TVVKGMCSSGDLDGAYNIVKEMIASGCRPNVVIYTTLIKTFLQNSRFGDAMRVLKEMK-E 480
Query: 236 MGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291
G+ P ++I ++ A R + VEM+E G Y + G +E
Sbjct: 481 QGIAPDIFCYNSLIIGLSKAKRMDEARSFLVEMVE----NGLKPNAFTYGAFISGYIEAS 536
Query: 292 EYILAGKTVMGMTERGFIP 310
E+ A K V M E G +P
Sbjct: 537 EFASADKYVKEMRECGVLP 555
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 68/306 (22%), Positives = 124/306 (40%), Gaps = 28/306 (9%)
Query: 47 YQQIPELLGSFEEACQNPNPF---SFLSNFPQNHR----IKVIDEMLESFIPLRPRSRPK 99
Y + E++ S C+ PN + + F QN R ++V+ EM E I P
Sbjct: 437 YNIVKEMIAS---GCR-PNVVIYTTLIKTFLQNSRFGDAMRVLKEMKEQGIA------PD 486
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
I L L + A + L + +G P S ++E + S +
Sbjct: 487 IFCYNSLIIGLSKAKRMDEARSFLVEMVENGLKPNAFTYGAFISGYIEAS-EFASADKYV 545
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
EM+ G P+ C L++ C +++EA + M + D ++Y++++ +
Sbjct: 546 KEMRECGVLPNKVLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKN 605
Query: 220 RKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +DA E+ +EM G+ P G++I + L M KA + + + +G
Sbjct: 606 DKVDDAEEIFREM-RGKGIAPDVFSYGVLINGFSKL---GNMQKASSIFDEMVEEGLTPN 661
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336
Y +++ G E A + + M+ +G P +++G G+ LA R
Sbjct: 662 VIIYNMLLGGFCRSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGD--LAEAFRL 719
Query: 337 RFAELK 342
F E+K
Sbjct: 720 -FDEMK 724
Score = 41.6 bits (96), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 77/185 (41%), Gaps = 4/185 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196
+L + + C+ V + +S+ G D T L++ L D++ +A ++ +
Sbjct: 558 VLCTGLINEYCKKGKVIEACSAYRSMVDQGILGDAKTYTVLMNGLFKNDKVDDAEEIFRE 617
Query: 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256
M PD+ SY ++I S A + EMV GL P + + +
Sbjct: 618 MRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMV-EEGLTPNVIIYNMLLGGFCRSG 676
Query: 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316
E+ KA E+++ + KG Y +++G + + A + M +G +P V
Sbjct: 677 EIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLKGLVPDSFVYT 736
Query: 317 KVVEG 321
+V+G
Sbjct: 737 TLVDG 741
Score = 36.2 bits (82), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 30/133 (22%), Positives = 53/133 (39%), Gaps = 2/133 (1%)
Query: 82 IDEMLESFIPLRPRSRPKIAYDY-LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140
+D+ E F +R + + Y +L L + A +I + G P I +
Sbjct: 608 VDDAEEIFREMRGKGIAPDVFSYGVLINGFSKLGNMQKASSIFDEMVEEGLTPNVIIYNM 667
Query: 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200
L + R + + ++L EM G HP+ T ++ C L EA ++ M
Sbjct: 668 LLGGFC-RSGEIEKAKELLDEMSVKGLHPNAVTYCTIIDGYCKSGDLAEAFRLFDEMKLK 726
Query: 201 ECVPDLESYSIVI 213
VPD Y+ ++
Sbjct: 727 GLVPDSFVYTTLV 739
Score = 34.7 bits (78), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 74/170 (43%), Gaps = 6/170 (3%)
Query: 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEM 232
T + L+ LC I +L +A +L M S D +YS++I + R + A ++ EM
Sbjct: 279 TYDVLIDGLCKIKRLEDAKSLLVEMDSLGVSLDNHTYSLLIDGLLKGRNADAAKGLVHEM 338
Query: 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292
V + G+ + M + M KA + + + G Q Y ++EG CRE
Sbjct: 339 V-SHGINIKPYMYDCCICVMSKEGVMEKAKALFDGMIASGLIPQAQAYASLIEG--YCRE 395
Query: 293 YIL--AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-TVVRQRFA 339
+ + ++ M +R + VV+G+ G+ A +V++ A
Sbjct: 396 KNVRQGYELLVEMKKRNIVISPYTYGTVVKGMCSSGDLDGAYNIVKEMIA 445
>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710
OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1
Length = 747
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/166 (24%), Positives = 73/166 (43%), Gaps = 3/166 (1%)
Query: 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217
+L EM G+ P T N L++ C ++ +A VL+ M PD+ SYS V+
Sbjct: 402 VLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFC 461
Query: 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277
+ ++A+ + +EMV G+ P + R +A ++ E + R G P
Sbjct: 462 RSYDVDEALRVKREMV-EKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDE 520
Query: 278 QGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y ++ C+E + A + M E+G +P + ++ GL
Sbjct: 521 FTYTALINAYCME-GDLEKALQLHNEMVEKGVLPDVVTYSVLINGL 565
Score = 42.0 bits (97), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 69/167 (41%), Gaps = 11/167 (6%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM G P T L+ S+C + A + L M P+ +Y+ ++ S
Sbjct: 335 EMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKG 394
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPIGF 277
N+A +++EM N G P V+ A + + +M A+ ++E ++ KG
Sbjct: 395 YMNEAYRVLREMNDN-GFSPS---VVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDV 450
Query: 278 QGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYIKVRQKVVEGL 322
Y V+ G CR Y + A + M E+G P +++G
Sbjct: 451 VSYSTVLSGF--CRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGF 495
Score = 40.0 bits (92), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 56/280 (20%), Positives = 110/280 (39%), Gaps = 45/280 (16%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159
++Y+ +L T++S + A + + L S P + + + C + ++ D+
Sbjct: 170 LSYNAVLDATIRSKRNISFAENVFKEMLESQVSP----NVFTYNILIRGFCFAGNI-DVA 224
Query: 160 L----EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215
L +M++ G P+ T N L+ C + ++ + K+L+ M+ P+L SY++VI
Sbjct: 225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLISYNVVING 284
Query: 216 MSTARKTNDAVEMMKEM----------------------------VLNMGLMPRQGMVIK 247
+ + + ++ EM ++ M R G+
Sbjct: 285 LCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTPS 344
Query: 248 VAAALRANREMWKAVEM---IEFLE----RKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
V M KA M +EFL+ R CP + Y +V+G + A + +
Sbjct: 345 VITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCP-NERTYTTLVDGFSQKGYMNEAYRVL 403
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340
M + GF P + ++ G G+ + A V + E
Sbjct: 404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKE 443
Score = 38.1 bits (87), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 35/151 (23%), Positives = 72/151 (47%), Gaps = 7/151 (4%)
Query: 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR 138
I V+++M E + S ++Y +LS +S + + AL + + + G P
Sbjct: 435 IAVLEDMKE-----KGLSPDVVSYSTVLSGFCRS-YDVDEALRVKREMVEKGIKPDTITY 488
Query: 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198
L + E+R +++ D+ EM +G PD T L+++ C L +A ++ M
Sbjct: 489 SSLIQGFCEQR-RTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMV 547
Query: 199 SAECVPDLESYSIVIGAMSTARKTNDAVEMM 229
+PD+ +YS++I ++ +T +A ++
Sbjct: 548 EKGVLPDVVTYSVLINGLNKQSRTREAKRLL 578
>sp|Q3ECK2|PPR92_ARATH Pentatricopeptide repeat-containing protein At1g62680,
mitochondrial OS=Arabidopsis thaliana GN=At1g62680 PE=2
SV=2
Length = 548
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/247 (22%), Positives = 98/247 (39%), Gaps = 37/247 (14%)
Query: 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175
+ LAL+IL + L+ G P L + + R S +V+ ++ +M IGY PD N
Sbjct: 136 VSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRNRVSDAVS-LVDKMVEIGYKPDIVAYN 194
Query: 176 YLVSSLC-------AIDQLVE----------------------------AAKVLKGMSSA 200
++ SLC A D E AA++L M
Sbjct: 195 AIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTYTALVNGLCNSSRWSDAARLLSDMIKK 254
Query: 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260
+ P++ +YS ++ A K +A E+ +EMV M + P + L + + +
Sbjct: 255 KITPNVITYSALLDAFVKNGKVLEAKELFEEMV-RMSIDPDIVTYSSLINGLCLHDRIDE 313
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320
A +M + + KGC Y ++ G + + K M++RG + +++
Sbjct: 314 ANQMFDLMVSKGCLADVVSYNTLINGFCKAKRVEDGMKLFREMSQRGLVSNTVTYNTLIQ 373
Query: 321 GLAGVGE 327
G G+
Sbjct: 374 GFFQAGD 380
Score = 38.5 bits (88), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 32/167 (19%), Positives = 67/167 (40%), Gaps = 1/167 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M+ +G D T N +++ C Q+ A +L M PD + ++
Sbjct: 110 KMEVLGIRNDLYTFNIVINCFCCCFQVSLALSILGKMLKLGYEPDRVTIGSLVNGFCRRN 169
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
+ +DAV ++ +MV +G P + +L + + A + + +ERKG Y
Sbjct: 170 RVSDAVSLVDKMV-EIGYKPDIVAYNAIIDSLCKTKRVNDAFDFFKEIERKGIRPNVVTY 228
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+V G + A + + M ++ P + +++ G+
Sbjct: 229 TALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDAFVKNGK 275
Score = 35.4 bits (80), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
+M G PD T N L+ LC +L +A + + M E D+ +Y+ VI M
Sbjct: 390 QMDFFGISPDIWTYNILLGGLCDNGELEKALVIFEDMQKREMDLDIVTYTTVIRGMCKTG 449
Query: 221 KTNDAVEMMKEMVLNMGLMP 240
K +A + + L GL P
Sbjct: 450 KVEEAWSLFCSLSLK-GLKP 468
Score = 35.0 bits (79), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 53/274 (19%), Positives = 114/274 (41%), Gaps = 18/274 (6%)
Query: 68 SFLSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
S ++ F + +R+ ++D+M+E I +P +AY+ ++ +L + A
Sbjct: 160 SLVNGFCRRNRVSDAVSLVDKMVE--IGYKP---DIVAYNAIID-SLCKTKRVNDAFDFF 213
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD---ILLEMKSIGYHPDCGTCNYLVSS 180
+ R G P ++ +A + C S +D +L +M P+ T + L+ +
Sbjct: 214 KEIERKGIRP----NVVTYTALVNGLCNSSRWSDAARLLSDMIKKKITPNVITYSALLDA 269
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
+++EA ++ + M PD+ +YS +I + + ++A +M MV L
Sbjct: 270 FVKNGKVLEAKELFEEMVRMSIDPDIVTYSSLINGLCLHDRIDEANQMFDLMVSKGCLAD 329
Query: 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300
+ +A R + +++ + ++G Y +++G + + A +
Sbjct: 330 VVSYNTLINGFCKAKR-VEDGMKLFREMSQRGLVSNTVTYNTLIQGFFQAGDVDKAQEFF 388
Query: 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
M G P I ++ GL GE + A V+
Sbjct: 389 SQMDFFGISPDIWTYNILLGGLCDNGELEKALVI 422
>sp|Q9CAN6|PPR97_ARATH Pentatricopeptide repeat-containing protein At1g63070,
mitochondrial OS=Arabidopsis thaliana GN=At1g63070 PE=1
SV=1
Length = 590
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/178 (23%), Positives = 75/178 (42%)
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
D+ +M++ G PD T N L+S LC + +A+++L M PDL ++ +I A
Sbjct: 271 DLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDMLEKNINPDLVFFNALIDAF 330
Query: 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276
K +A ++ EMV + P + + + + +E+ + ++G
Sbjct: 331 VKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGN 390
Query: 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334
Y ++ G + R+ A M G P I +++GL G + A VV
Sbjct: 391 TVTYTTLIHGFFQARDCDNAQMVFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVV 448
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/185 (21%), Positives = 76/185 (41%), Gaps = 1/185 (0%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
RR Q IL +M +GY P T N L++ C +++ EA ++ M PD
Sbjct: 122 RRSQLSLALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTV 181
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267
+++ ++ + K ++AV +++ MV+ G P V L E A+ ++
Sbjct: 182 TFTTLVHGLFQHNKASEAVALVERMVVK-GCQPDLVTYGAVINGLCKRGEPDLALNLLNK 240
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327
+E+ Y +++G + + A M +G P + ++ L G
Sbjct: 241 MEKGKIEADVVIYNTIIDGLCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGR 300
Query: 328 WKLAT 332
W A+
Sbjct: 301 WSDAS 305
Score = 38.1 bits (87), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 48/263 (18%), Positives = 110/263 (41%), Gaps = 19/263 (7%)
Query: 68 SFLSNFPQNHRIK----VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAIL 123
S L+ F +RI ++D+M+E + +P + + + L+ Q + A+A++
Sbjct: 150 SLLNGFCHGNRISEAVALVDQMVE--MGYQPDT---VTFTTLVHGLFQH-NKASEAVALV 203
Query: 124 QRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180
+R + GC P L+ A + +R + ++L +M+ D N ++
Sbjct: 204 ERMVVKGCQP----DLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYNTIIDG 259
Query: 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240
LC + +A + M + PD+ +Y+ +I + + +DA ++ +M L + P
Sbjct: 260 LCKYKHMDDAFDLFNKMETKGIKPDVFTYNPLISCLCNYGRWSDASRLLSDM-LEKNINP 318
Query: 241 RQGMVIKVAAALRANREMWKAVEMI-EFLERKGCPIGFQGYEVVVEGCLECREYILAGKT 299
+ A ++ +A ++ E ++ K C Y +++G + + +
Sbjct: 319 DLVFFNALIDAFVKEGKLVEAEKLYDEMVKSKHCFPDVVAYNTLIKGFCKYKRVEEGMEV 378
Query: 300 VMGMTERGFIPYIKVRQKVVEGL 322
M++RG + ++ G
Sbjct: 379 FREMSQRGLVGNTVTYTTLIHGF 401
Score = 38.1 bits (87), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 46/102 (45%), Gaps = 3/102 (2%)
Query: 140 LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199
L+ + R C + + + +M S G HPD T N L+ LC + A V + M
Sbjct: 397 LIHGFFQARDCDNAQM--VFKQMVSDGVHPDIMTYNILLDGLCNNGNVETALVVFEYMQK 454
Query: 200 AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241
+ D+ +Y+ +I A+ A K D ++ + L G+ P
Sbjct: 455 RDMKLDIVTYTTMIEALCKAGKVEDGWDLFCSLSLK-GVKPN 495
>sp|P0C7Q7|PPR38_ARATH Putative pentatricopeptide repeat-containing protein At1g12700,
mitochondrial OS=Arabidopsis thaliana GN=At1g12700 PE=3
SV=1
Length = 602
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/194 (21%), Positives = 87/194 (44%), Gaps = 4/194 (2%)
Query: 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206
R ++ ++ D+++ K PD T L+ C + ++ + KV + +S V +
Sbjct: 347 NRLSEANNMLDLMVRNKC---SPDIVTFTSLIKGYCMVKRVDDGMKVFRNISKRGLVANA 403
Query: 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266
+YSI++ + K A E+ +EMV + G++P + L N ++ KA+E+ E
Sbjct: 404 VTYSILVQGFCQSGKIKLAEELFQEMV-SHGVLPDVMTYGILLDGLCDNGKLEKALEIFE 462
Query: 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326
L++ +G Y ++EG + + A + +G P + ++ GL G
Sbjct: 463 DLQKSKMDLGIVMYTTIIEGMCKGGKVEDAWNLFCSLPCKGVKPNVMTYTVMISGLCKKG 522
Query: 327 EWKLATVVRQRFAE 340
A ++ ++ E
Sbjct: 523 SLSEANILLRKMEE 536
Score = 49.7 bits (117), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/171 (22%), Positives = 74/171 (43%), Gaps = 1/171 (0%)
Query: 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220
EM++ G T N LV LC + + A +LK M S E VP++ ++++++
Sbjct: 253 EMETKGIKSSVVTYNSLVRGLCKAGKWNDGALLLKDMVSREIVPNVITFNVLLDVFVKEG 312
Query: 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280
K +A E+ KEM+ G+ P + + +A M++ + R C +
Sbjct: 313 KLQEANELYKEMI-TRGISPNIITYNTLMDGYCMQNRLSEANNMLDLMVRNKCSPDIVTF 371
Query: 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331
+++G + K +++RG + +V+G G+ KLA
Sbjct: 372 TSLIKGYCMVKRVDDGMKVFRNISKRGLVANAVTYSILVQGFCQSGKIKLA 422
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 46/85 (54%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
R C++ +L ++ +GY PD T N L+ L ++ EA ++ M C PD+
Sbjct: 135 RCCKTCFAYSVLGKVMKLGYEPDTTTFNTLIKGLFLEGKVSEAVVLVDRMVENGCQPDVV 194
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEM 232
+Y+ ++ + + T+ A++++++M
Sbjct: 195 TYNSIVNGICRSGDTSLALDLLRKM 219
>sp|Q9LFC5|PP360_ARATH Pentatricopeptide repeat-containing protein At5g01110
OS=Arabidopsis thaliana GN=At5g01110 PE=2 SV=1
Length = 729
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/208 (25%), Positives = 85/208 (40%), Gaps = 31/208 (14%)
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ + + ++ EM G PD T L+ C +VE KV M S + VPDL
Sbjct: 317 KHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSDMRSRDVVPDLV 376
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-------------RQGMVIKVAAALRA 254
+S ++ + + + A+ M V GL+P R+GM I VA LR
Sbjct: 377 CFSSMMSLFTRSGNLDKAL-MYFNSVKEAGLIPDNVIYTILIQGYCRKGM-ISVAMNLRN 434
Query: 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL--AGKTVMGMTERGFIPYI 312
EM++ +GC + Y ++ G C+ +L A K MTER P
Sbjct: 435 --------EMLQ----QGCAMDVVTYNTILHGL--CKRKMLGEADKLFNEMTERALFPDS 480
Query: 313 KVRQKVVEGLAGVGEWKLATVVRQRFAE 340
+++G +G + A + Q+ E
Sbjct: 481 YTLTILIDGHCKLGNLQNAMELFQKMKE 508
Score = 41.6 bits (96), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 47/195 (24%), Positives = 88/195 (45%), Gaps = 11/195 (5%)
Query: 50 IPELLGSFEEACQNPNPFSFL-SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYD--YLL 106
+ L +F N + F L + Q +++ E E+F LR + ++ D L
Sbjct: 151 VNSLDSTFSNCGSNDSVFDLLIRTYVQARKLR---EAHEAFTLLRSKGFT-VSIDACNAL 206
Query: 107 SYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165
+L + + LA + Q RSG + V + +++++ L + + + V L +++
Sbjct: 207 IGSLVRIGWVELAWGVYQEISRSGVGINVYTLNIMVNA--LCKDGKMEKVGTFLSQVQEK 264
Query: 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225
G +PD T N L+S+ + + EA +++ M P + +Y+ VI + K A
Sbjct: 265 GVYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGVYTYNTVINGLCKHGKYERA 324
Query: 226 VEMMKEMVLNMGLMP 240
E+ EM L GL P
Sbjct: 325 KEVFAEM-LRSGLSP 338
Score = 35.8 bits (81), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Query: 160 LEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219
+E + G PD T N ++ C +Q+ EA VL+ M PD +Y+ +I +
Sbjct: 646 MEEEQGGLVPDVFTYNSILHGFCRQNQMKEAEVVLRKMIERGVNPDRSTYTCMINGFVSQ 705
Query: 220 RKTNDAVEMMKEMVLNMGLMP 240
+A + EM L G P
Sbjct: 706 DNLTEAFRIHDEM-LQRGFSP 725
Score = 32.0 bits (71), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 37/81 (45%)
Query: 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212
Q+ ++ +MK D T N L+ + + A ++ M S E +P SYSI+
Sbjct: 497 QNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKEILPTPISYSIL 556
Query: 213 IGAMSTARKTNDAVEMMKEMV 233
+ A+ + +A + EM+
Sbjct: 557 VNALCSKGHLAEAFRVWDEMI 577
>sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360,
mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2
SV=2
Length = 517
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/193 (23%), Positives = 83/193 (43%), Gaps = 5/193 (2%)
Query: 119 ALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177
AL I++ S C P I +L+ + E R + D LEM+ G D N L
Sbjct: 291 ALGIVRSMDPSICKPTTFIYSVLVHTYGTENRLEE--AVDTFLEMERSGMKADVAVFNSL 348
Query: 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237
+ + C +++ +VLK M S P+ +S +I++ + + ++A ++ ++M+
Sbjct: 349 IGAFCKANRMKNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMI--KV 406
Query: 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297
P V +EM A ++ +++ +KG + V++ G E R A
Sbjct: 407 CEPDADTYTMVIKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKAC 466
Query: 298 KTVMGMTERGFIP 310
+ M E G P
Sbjct: 467 VLLEEMIEMGIRP 479
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 56/269 (20%), Positives = 113/269 (42%), Gaps = 21/269 (7%)
Query: 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89
S+R + + + Y+ + +L+ + + + N +F + R + +DE + +F
Sbjct: 133 SVRAYHMMIESTAKIRQYKLMWDLINAMRKK-KMLNVETFCIVMRKYARAQKVDEAIYAF 191
Query: 90 IPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE 147
+ P +A++ LLS +S + + A + + +R P + +L W
Sbjct: 192 NVMEKYDLPPNLVAFNGLLSALCKSKN-VRKAQEVFE-NMRDRFTPDSKTYSILLEGW-G 248
Query: 148 RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE 207
+ ++ EM G HPD T + +V LC ++ EA +++ M + C P
Sbjct: 249 KEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSMDPSICKPTTF 308
Query: 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA-------AALRANREMWK 260
YS+++ T + +AV+ E M R GM VA A +ANR M
Sbjct: 309 IYSVLVHTYGTENRLEEAVDTFLE-------MERSGMKADVAVFNSLIGAFCKANR-MKN 360
Query: 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLE 289
+++ ++ KG + +++ +E
Sbjct: 361 VYRVLKEMKSKGVTPNSKSCNIILRHLIE 389
>sp|Q9M065|PP352_ARATH Pentatricopeptide repeat-containing protein At4g36680,
mitochondrial OS=Arabidopsis thaliana GN=At4g36680 PE=1
SV=1
Length = 412
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 60/278 (21%), Positives = 120/278 (43%), Gaps = 29/278 (10%)
Query: 21 QFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF------------S 68
Q+ + RS S L + A + +K++ ++P+L F+E Q N S
Sbjct: 130 QYGTPRSAVSFNAL---LNACLHSKNFDKVPQL---FDEIPQRYNKIIPDKISYGILIKS 183
Query: 69 FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR 128
+ + I+++ +M + + IA+ +LS +L L +A + ++
Sbjct: 184 YCDSGTPEKAIEIMRQMQGKGMEV-----TTIAFTTILS-SLYKKGELEVADNLWNEMVK 237
Query: 129 SGC-VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187
GC + + + SA E + V +++ EM S+G PD + NYL+++ C L
Sbjct: 238 KGCELDNAAYNVRIMSAQKE---SPERVKELIEEMSSMGLKPDTISYNYLMTAYCERGML 294
Query: 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247
EA KV +G+ C P+ ++ +I + +R + K+ V M +P +
Sbjct: 295 DEAKKVYEGLEGNNCAPNAATFRTLIFHLCYSRLYEQGYAIFKKSVY-MHKIPDFNTLKH 353
Query: 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285
+ L N++ A +I +++K P ++ + E
Sbjct: 354 LVVGLVENKKRDDAKGLIRTVKKKFPPSFLNAWKKLEE 391
>sp|Q9FRS4|PPR22_ARATH Pentatricopeptide repeat-containing protein At1g08610
OS=Arabidopsis thaliana GN=At1g08610 PE=2 SV=1
Length = 559
Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 92/219 (42%), Gaps = 17/219 (7%)
Query: 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ---SVA 156
+ Y+ L++Y + + +A +++Q L G ++ + + L C + V
Sbjct: 280 VTYNSLVNYNCRRGNLEEVA-SVIQHILSHGL----ELNTVTYNTLLHSLCSHEYWDEVE 334
Query: 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM 216
+IL M Y P T N L++ LC L A M +C+PD+ +Y+ V+GAM
Sbjct: 335 EILNIMYQTSYCPTVITYNILINGLCKARLLSRAIDFFYQMLEQKCLPDIVTYNTVLGAM 394
Query: 217 STARKTNDAVE---MMKEMVLNMGLMPRQGMVIKVA------AALRANREMWKAVEMIEF 267
S +DA+E ++K GL+ ++ +A AL +M A +
Sbjct: 395 SKEGMVDDAIELLGLLKNTCCPPGLITYNSVIDGLAKKGLMKKALELYHQMLDAGIFPDD 454
Query: 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306
+ R+ GF +V E +E G + G T R
Sbjct: 455 ITRRSLIYGFCRANLVEEAGQVLKETSNRGNGIRGSTYR 493
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 76/165 (46%), Gaps = 12/165 (7%)
Query: 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH---PDCGTCNYLVSSLCAIDQLVE 189
P+ + ++ L C + + D ++ + H P +C+ LV L IDQL +
Sbjct: 98 PITENDEETNNEILHNLCSNGKLTDACKLVEVMARHNQVPHFPSCSNLVRGLARIDQLDK 157
Query: 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249
A +L+ M + VPD +Y+++IG + A+ ++++M L+ G P VI
Sbjct: 158 AMCILRVMVMSGGVPDTITYNMIIGNLCKKGHIRTALVLLEDMSLS-GSPPD---VITYN 213
Query: 250 AALRANREMWKAVEMIEFLE---RKGCPIGFQGYEVVVEGCLECR 291
+R + A + I F + + GCP Y V+VE L CR
Sbjct: 214 TVIRCMFDYGNAEQAIRFWKDQLQNGCPPFMITYTVLVE--LVCR 256
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 54/247 (21%), Positives = 92/247 (37%), Gaps = 53/247 (21%)
Query: 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178
A+ + L++GC P I + + R C S ++L +M G +PD T N LV
Sbjct: 228 AIRFWKDQLQNGCPPF-MITYTVLVELVCRYCGSARAIEVLEDMAVEGCYPDIVTYNSLV 286
Query: 179 S-----------------------------------SLCAIDQLVEAAKVLKGMSSAECV 203
+ SLC+ + E ++L M
Sbjct: 287 NYNCRRGNLEEVASVIQHILSHGLELNTVTYNTLLHSLCSHEYWDEVEEILNIMYQTSYC 346
Query: 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263
P + +Y+I+I + AR + A++ +M L +P V A+ + A+E
Sbjct: 347 PTVITYNILINGLCKARLLSRAIDFFYQM-LEQKCLPDIVTYNTVLGAMSKEGMVDDAIE 405
Query: 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG--------MTERGFIPYIKVR 315
++ L+ CP G Y V++G LA K +M M + G P R
Sbjct: 406 LLGLLKNTCCPPGLITYNSVIDG--------LAKKGLMKKALELYHQMLDAGIFPDDITR 457
Query: 316 QKVVEGL 322
+ ++ G
Sbjct: 458 RSLIYGF 464
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 113,124,640
Number of Sequences: 539616
Number of extensions: 4277700
Number of successful extensions: 12483
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 35
Number of HSP's that attempted gapping in prelim test: 11025
Number of HSP's gapped (non-prelim): 1083
length of query: 343
length of database: 191,569,459
effective HSP length: 118
effective length of query: 225
effective length of database: 127,894,771
effective search space: 28776323475
effective search space used: 28776323475
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)