Query 046547
Match_columns 343
No_of_seqs 346 out of 1824
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 13:12:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/046547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03218 maturation of RBCL 1; 100.0 5.5E-54 1.2E-58 410.7 37.9 320 17-340 458-782 (1060)
2 PLN03218 maturation of RBCL 1; 100.0 1.1E-53 2.4E-58 408.6 37.8 309 29-341 435-748 (1060)
3 PLN03081 pentatricopeptide (PP 100.0 1.5E-48 3.3E-53 369.2 28.0 311 13-342 175-524 (697)
4 PLN03081 pentatricopeptide (PP 100.0 2E-47 4.4E-52 361.5 31.9 311 17-340 108-454 (697)
5 PLN03077 Protein ECB2; Provisi 100.0 4.5E-46 9.7E-51 360.1 31.7 297 30-339 252-652 (857)
6 PLN03077 Protein ECB2; Provisi 100.0 1.7E-46 3.7E-51 363.1 27.7 309 15-339 140-482 (857)
7 PRK11788 tetratricopeptide rep 99.9 2E-18 4.3E-23 153.7 32.7 289 40-340 44-346 (389)
8 TIGR02917 PEP_TPR_lipo putativ 99.8 2.4E-17 5.3E-22 161.8 35.6 297 30-340 600-899 (899)
9 PRK11788 tetratricopeptide rep 99.8 2.4E-17 5.1E-22 146.8 29.5 260 74-342 46-312 (389)
10 TIGR02917 PEP_TPR_lipo putativ 99.8 1.3E-16 2.8E-21 156.6 36.0 224 109-341 576-799 (899)
11 PRK15174 Vi polysaccharide exp 99.7 4.3E-14 9.4E-19 132.8 34.8 296 32-342 77-382 (656)
12 KOG4422 Uncharacterized conser 99.7 1.8E-14 3.9E-19 121.0 26.8 298 31-342 116-463 (625)
13 PRK15174 Vi polysaccharide exp 99.7 7.2E-14 1.6E-18 131.3 34.0 297 33-342 44-348 (656)
14 KOG4422 Uncharacterized conser 99.7 3.6E-13 7.7E-18 113.3 28.5 236 30-272 206-463 (625)
15 TIGR00990 3a0801s09 mitochondr 99.6 1.4E-11 3E-16 116.0 35.4 232 101-341 333-571 (615)
16 TIGR00990 3a0801s09 mitochondr 99.6 1.1E-11 2.3E-16 116.8 32.6 298 33-342 129-497 (615)
17 KOG4626 O-linked N-acetylgluco 99.6 1.1E-12 2.4E-17 115.2 21.5 294 30-341 115-451 (966)
18 KOG4626 O-linked N-acetylgluco 99.5 1.9E-11 4.1E-16 107.6 26.8 298 30-343 149-487 (966)
19 PF13429 TPR_15: Tetratricopep 99.5 5.6E-14 1.2E-18 119.2 11.1 260 70-340 15-276 (280)
20 PF13041 PPR_2: PPR repeat fam 99.5 3E-14 6.6E-19 86.5 6.3 48 240-287 1-48 (50)
21 PF13429 TPR_15: Tetratricopep 99.5 1.5E-13 3.2E-18 116.6 12.9 257 36-304 13-275 (280)
22 PF13041 PPR_2: PPR repeat fam 99.5 3E-14 6.4E-19 86.5 6.2 49 169-217 1-49 (50)
23 PRK10049 pgaA outer membrane p 99.5 1.1E-10 2.5E-15 112.1 33.5 303 29-342 47-423 (765)
24 PRK11447 cellulose synthase su 99.5 2.2E-10 4.8E-15 115.1 33.4 297 35-342 116-525 (1157)
25 PRK11447 cellulose synthase su 99.5 2E-10 4.3E-15 115.4 32.7 152 179-339 581-738 (1157)
26 PRK10049 pgaA outer membrane p 99.5 6.7E-10 1.5E-14 106.8 34.5 305 30-343 82-458 (765)
27 PRK09782 bacteriophage N4 rece 99.5 3.9E-10 8.4E-15 109.4 31.8 300 30-343 375-708 (987)
28 PRK10747 putative protoheme IX 99.5 4.9E-10 1.1E-14 99.6 30.0 282 44-341 97-390 (398)
29 TIGR00540 hemY_coli hemY prote 99.5 3.5E-10 7.5E-15 101.1 29.0 292 34-339 85-397 (409)
30 PRK14574 hmsH outer membrane p 99.4 2.8E-09 6.1E-14 101.5 35.1 300 30-340 33-395 (822)
31 PRK14574 hmsH outer membrane p 99.4 4.2E-09 9.2E-14 100.3 34.3 301 35-342 106-480 (822)
32 TIGR02521 type_IV_pilW type IV 99.4 8.1E-10 1.7E-14 90.7 25.3 201 136-341 32-232 (234)
33 KOG4318 Bicoid mRNA stability 99.4 5.1E-12 1.1E-16 115.1 12.7 218 92-331 18-290 (1088)
34 PRK10747 putative protoheme IX 99.4 1.6E-09 3.5E-14 96.3 28.2 257 34-305 121-389 (398)
35 KOG2003 TPR repeat-containing 99.3 2.4E-09 5.3E-14 91.3 23.8 57 10-68 255-311 (840)
36 TIGR00540 hemY_coli hemY prote 99.3 9.2E-09 2E-13 92.0 27.8 262 33-304 120-397 (409)
37 TIGR02521 type_IV_pilW type IV 99.3 5.9E-09 1.3E-13 85.5 24.5 199 100-305 32-231 (234)
38 COG3071 HemY Uncharacterized e 99.2 1.2E-07 2.5E-12 80.0 29.4 282 44-339 97-388 (400)
39 KOG2003 TPR repeat-containing 99.2 1E-08 2.2E-13 87.6 23.2 272 39-327 427-709 (840)
40 PRK09782 bacteriophage N4 rece 99.2 1.1E-07 2.4E-12 92.6 33.2 285 45-343 356-674 (987)
41 KOG1126 DNA-binding cell divis 99.2 6.9E-09 1.5E-13 92.5 22.7 278 46-342 334-621 (638)
42 KOG1126 DNA-binding cell divis 99.2 3.9E-09 8.4E-14 94.0 21.1 265 32-311 354-625 (638)
43 COG3071 HemY Uncharacterized e 99.2 1.3E-07 2.8E-12 79.7 28.0 267 31-310 118-394 (400)
44 PF12569 NARP1: NMDA receptor- 99.2 5.2E-08 1.1E-12 88.1 27.1 288 38-340 11-333 (517)
45 PRK12370 invasion protein regu 99.2 4E-08 8.7E-13 91.3 27.2 214 115-340 276-501 (553)
46 COG2956 Predicted N-acetylgluc 99.2 3.8E-08 8.3E-13 80.6 23.1 217 114-339 49-276 (389)
47 KOG1155 Anaphase-promoting com 99.2 2.9E-08 6.4E-13 85.0 23.1 220 110-340 272-494 (559)
48 KOG4318 Bicoid mRNA stability 99.2 1.1E-08 2.5E-13 93.8 21.3 256 16-292 10-286 (1088)
49 KOG2076 RNA polymerase III tra 99.1 1.7E-07 3.6E-12 86.6 28.1 300 35-341 144-478 (895)
50 COG2956 Predicted N-acetylgluc 99.1 1.3E-06 2.8E-11 71.9 27.9 284 44-339 48-345 (389)
51 PRK12370 invasion protein regu 99.1 1.7E-07 3.6E-12 87.2 25.7 214 113-340 317-534 (553)
52 KOG1155 Anaphase-promoting com 99.1 3.2E-07 7E-12 78.8 24.7 220 40-270 271-494 (559)
53 KOG1840 Kinesin light chain [C 99.1 2E-07 4.3E-12 83.6 24.2 240 101-342 201-480 (508)
54 KOG2002 TPR-containing nuclear 99.0 1.8E-07 3.9E-12 87.0 24.1 288 8-306 429-745 (1018)
55 PF12854 PPR_1: PPR repeat 99.0 3.7E-10 8.1E-15 61.7 3.7 32 307-338 2-33 (34)
56 PF12854 PPR_1: PPR repeat 99.0 6.1E-10 1.3E-14 60.9 3.9 32 166-197 2-33 (34)
57 PF12569 NARP1: NMDA receptor- 99.0 8.2E-07 1.8E-11 80.5 24.8 258 70-340 11-290 (517)
58 KOG0547 Translocase of outer m 98.9 5.2E-07 1.1E-11 78.1 20.3 221 113-341 339-566 (606)
59 KOG1129 TPR repeat-containing 98.9 4.8E-07 1E-11 74.5 18.7 233 100-341 223-458 (478)
60 PRK11189 lipoprotein NlpI; Pro 98.9 3.1E-06 6.7E-11 72.3 24.8 196 109-317 73-275 (296)
61 PF04733 Coatomer_E: Coatomer 98.9 2.9E-07 6.3E-12 77.6 17.8 210 82-306 51-265 (290)
62 KOG2002 TPR-containing nuclear 98.9 1.4E-05 3E-10 74.9 29.3 301 30-340 163-480 (1018)
63 KOG2076 RNA polymerase III tra 98.8 1.9E-05 4.1E-10 73.4 28.6 301 29-339 171-510 (895)
64 KOG1129 TPR repeat-containing 98.8 2.2E-07 4.7E-12 76.5 14.4 222 74-305 234-457 (478)
65 COG3063 PilF Tfp pilus assembl 98.8 1.1E-05 2.3E-10 63.5 22.9 189 110-305 45-235 (250)
66 cd05804 StaR_like StaR_like; a 98.8 0.00011 2.5E-09 64.6 30.9 301 34-341 9-336 (355)
67 PRK11189 lipoprotein NlpI; Pro 98.7 2.1E-05 4.6E-10 67.2 25.3 217 114-342 40-266 (296)
68 KOG0495 HAT repeat protein [RN 98.7 3E-05 6.5E-10 69.9 26.4 150 183-341 731-880 (913)
69 PF04733 Coatomer_E: Coatomer 98.7 1E-06 2.2E-11 74.4 16.4 213 112-341 47-265 (290)
70 cd05804 StaR_like StaR_like; a 98.7 6.6E-05 1.4E-09 66.0 27.2 226 109-340 52-292 (355)
71 COG3063 PilF Tfp pilus assembl 98.7 3.5E-05 7.5E-10 60.8 21.7 199 138-342 38-237 (250)
72 KOG1840 Kinesin light chain [C 98.6 1.4E-05 3E-10 71.9 21.8 245 32-304 200-477 (508)
73 KOG1173 Anaphase-promoting com 98.6 7.4E-05 1.6E-09 66.2 25.4 284 29-323 242-533 (611)
74 TIGR03302 OM_YfiO outer membra 98.6 1.3E-05 2.8E-10 66.2 19.6 180 137-340 35-231 (235)
75 KOG0495 HAT repeat protein [RN 98.6 0.00014 3.1E-09 65.7 26.5 299 31-343 516-848 (913)
76 KOG1156 N-terminal acetyltrans 98.6 0.00024 5.3E-09 64.1 26.6 297 32-340 144-467 (700)
77 KOG0547 Translocase of outer m 98.6 2.4E-05 5.3E-10 68.1 19.6 212 82-305 345-565 (606)
78 KOG1174 Anaphase-promoting com 98.5 0.0003 6.5E-09 60.3 25.3 235 98-343 231-502 (564)
79 TIGR00756 PPR pentatricopeptid 98.5 2.4E-07 5.2E-12 51.2 4.3 31 245-275 3-33 (35)
80 TIGR00756 PPR pentatricopeptid 98.5 2.3E-07 5E-12 51.2 4.1 33 173-205 2-34 (35)
81 KOG1174 Anaphase-promoting com 98.5 0.00026 5.6E-09 60.7 23.2 264 29-307 230-501 (564)
82 PF13812 PPR_3: Pentatricopept 98.5 3.8E-07 8.3E-12 50.0 4.3 31 244-274 3-33 (34)
83 PF10037 MRP-S27: Mitochondria 98.4 4.6E-06 9.9E-11 73.3 12.8 124 166-290 61-186 (429)
84 KOG1128 Uncharacterized conser 98.4 3.6E-05 7.7E-10 70.2 18.2 222 97-342 395-617 (777)
85 KOG4162 Predicted calmodulin-b 98.4 0.0016 3.4E-08 60.2 29.5 86 254-342 696-784 (799)
86 PLN02789 farnesyltranstransfer 98.4 0.0009 1.9E-08 57.5 25.8 227 108-342 45-303 (320)
87 PF10037 MRP-S27: Mitochondria 98.4 6.9E-06 1.5E-10 72.2 12.9 126 128-255 59-186 (429)
88 PF13812 PPR_3: Pentatricopept 98.4 5.2E-07 1.1E-11 49.5 4.0 32 173-204 3-34 (34)
89 KOG1070 rRNA processing protei 98.4 0.00047 1E-08 67.5 25.3 232 99-339 1458-1698(1710)
90 KOG3081 Vesicle coat complex C 98.4 0.00023 4.9E-09 57.5 19.7 148 147-306 119-271 (299)
91 PRK10370 formate-dependent nit 98.4 8.7E-05 1.9E-09 59.2 17.5 129 183-316 51-182 (198)
92 KOG1915 Cell cycle control pro 98.4 0.0015 3.2E-08 57.2 27.1 153 184-341 379-536 (677)
93 KOG1070 rRNA processing protei 98.3 0.00024 5.1E-09 69.5 22.3 201 133-342 1455-1664(1710)
94 KOG0624 dsRNA-activated protei 98.3 0.0013 2.7E-08 55.3 25.4 313 17-342 24-371 (504)
95 TIGR03302 OM_YfiO outer membra 98.3 0.00018 3.9E-09 59.3 19.3 183 99-306 33-232 (235)
96 KOG1173 Anaphase-promoting com 98.3 0.00014 2.9E-09 64.6 18.9 246 29-288 276-533 (611)
97 KOG4340 Uncharacterized conser 98.3 0.00031 6.8E-09 57.7 18.9 26 277-302 310-335 (459)
98 KOG3081 Vesicle coat complex C 98.3 0.00058 1.3E-08 55.2 19.8 89 214-307 145-237 (299)
99 KOG1915 Cell cycle control pro 98.3 0.0025 5.4E-08 55.8 29.3 99 34-140 110-212 (677)
100 PF08579 RPM2: Mitochondrial r 98.3 2.2E-05 4.7E-10 54.6 10.2 39 179-217 33-72 (120)
101 PF08579 RPM2: Mitochondrial r 98.2 1.6E-05 3.4E-10 55.3 9.1 68 151-218 40-116 (120)
102 KOG2047 mRNA splicing factor [ 98.2 0.0036 7.8E-08 56.9 26.0 289 34-332 390-714 (835)
103 PRK14720 transcript cleavage f 98.2 0.00037 8E-09 66.9 21.0 215 98-323 30-268 (906)
104 COG5010 TadD Flp pilus assembl 98.2 0.00027 6E-09 56.9 17.0 127 172-302 101-227 (257)
105 KOG3785 Uncharacterized conser 98.2 0.001 2.2E-08 56.0 20.7 26 36-61 62-87 (557)
106 PF09976 TPR_21: Tetratricopep 98.2 9.5E-05 2.1E-09 55.9 13.7 125 208-337 14-143 (145)
107 PF01535 PPR: PPR repeat; Int 98.2 2.6E-06 5.6E-11 45.5 3.6 29 173-201 2-30 (31)
108 PRK15179 Vi polysaccharide bio 98.2 0.001 2.3E-08 63.0 22.9 200 100-319 28-229 (694)
109 PF01535 PPR: PPR repeat; Int 98.2 3E-06 6.6E-11 45.2 3.6 29 244-272 2-30 (31)
110 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00022 4.7E-09 62.6 16.4 111 183-301 181-292 (395)
111 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 0.00013 2.7E-09 64.1 14.8 117 146-269 179-295 (395)
112 PRK04841 transcriptional regul 98.1 0.0096 2.1E-07 59.4 30.2 231 109-340 461-719 (903)
113 PRK15359 type III secretion sy 98.1 0.00014 3.1E-09 54.8 13.1 92 176-270 29-120 (144)
114 PRK04841 transcriptional regul 98.1 0.0084 1.8E-07 59.8 29.2 302 38-341 416-760 (903)
115 PRK15359 type III secretion sy 98.1 0.00023 5E-09 53.7 13.9 109 192-307 14-122 (144)
116 KOG2376 Signal recognition par 98.1 0.0071 1.5E-07 54.4 25.4 29 33-61 112-140 (652)
117 TIGR02552 LcrH_SycD type III s 98.1 0.00019 4E-09 53.5 13.3 116 193-315 5-121 (135)
118 PRK10370 formate-dependent nit 98.1 0.00037 8E-09 55.6 15.4 126 151-281 54-182 (198)
119 KOG3060 Uncharacterized conser 98.1 0.0038 8.3E-08 50.3 22.3 187 113-307 25-221 (289)
120 PF06239 ECSIT: Evolutionarily 98.1 8.6E-05 1.9E-09 58.3 11.0 89 133-221 45-153 (228)
121 KOG4340 Uncharacterized conser 98.1 0.0035 7.6E-08 51.7 20.4 189 112-305 156-374 (459)
122 TIGR02552 LcrH_SycD type III s 98.1 0.0003 6.5E-09 52.4 13.9 104 172-280 18-121 (135)
123 KOG1125 TPR repeat-containing 98.0 0.00076 1.6E-08 60.2 17.7 219 112-341 297-527 (579)
124 KOG2047 mRNA splicing factor [ 98.0 0.01 2.3E-07 54.0 25.9 100 243-342 388-507 (835)
125 KOG3060 Uncharacterized conser 98.0 0.005 1.1E-07 49.6 20.4 185 150-341 26-220 (289)
126 KOG1125 TPR repeat-containing 98.0 0.0039 8.5E-08 55.8 21.2 253 70-335 292-565 (579)
127 COG5010 TadD Flp pilus assembl 98.0 0.0018 4E-08 52.2 17.5 156 175-336 70-226 (257)
128 PF04840 Vps16_C: Vps16, C-ter 98.0 0.0061 1.3E-07 52.3 21.7 111 206-337 177-287 (319)
129 COG4783 Putative Zn-dependent 98.0 0.011 2.3E-07 52.2 26.6 240 38-306 209-454 (484)
130 KOG2376 Signal recognition par 98.0 0.013 2.7E-07 52.9 26.9 56 283-340 382-445 (652)
131 PRK15179 Vi polysaccharide bio 97.9 0.00083 1.8E-08 63.7 17.5 143 99-248 86-228 (694)
132 KOG3616 Selective LIM binding 97.9 0.00076 1.7E-08 62.0 16.3 132 183-337 744-875 (1636)
133 PF09976 TPR_21: Tetratricopep 97.9 0.00065 1.4E-08 51.3 13.8 128 172-303 13-144 (145)
134 KOG3785 Uncharacterized conser 97.9 0.0092 2E-07 50.5 21.1 196 102-307 289-491 (557)
135 PF06239 ECSIT: Evolutionarily 97.9 0.00011 2.3E-09 57.8 9.3 88 168-256 44-152 (228)
136 KOG0985 Vesicle coat protein c 97.9 0.01 2.2E-07 57.0 23.3 264 26-332 979-1269(1666)
137 PRK14720 transcript cleavage f 97.9 0.012 2.7E-07 56.9 24.1 242 18-288 18-268 (906)
138 KOG1128 Uncharacterized conser 97.9 0.0029 6.3E-08 58.2 18.6 210 99-323 424-634 (777)
139 cd00189 TPR Tetratricopeptide 97.9 0.00037 8E-09 47.5 10.7 92 247-340 5-96 (100)
140 KOG3616 Selective LIM binding 97.8 0.004 8.6E-08 57.5 18.9 45 281-334 886-930 (1636)
141 COG4783 Putative Zn-dependent 97.8 0.0056 1.2E-07 53.9 18.5 119 216-339 316-435 (484)
142 PF05843 Suf: Suppressor of fo 97.7 0.00078 1.7E-08 57.0 12.6 145 172-322 2-150 (280)
143 KOG0985 Vesicle coat protein c 97.7 0.049 1.1E-06 52.5 26.1 233 79-340 967-1222(1666)
144 KOG2053 Mitochondrial inherita 97.7 0.026 5.7E-07 53.4 22.9 191 112-307 55-256 (932)
145 TIGR02795 tol_pal_ybgF tol-pal 97.7 0.0014 3E-08 47.3 12.2 100 208-307 4-106 (119)
146 KOG0548 Molecular co-chaperone 97.7 0.032 6.9E-07 49.8 23.0 88 39-128 10-98 (539)
147 PF12921 ATP13: Mitochondrial 97.7 0.0007 1.5E-08 49.4 10.0 84 171-254 2-100 (126)
148 PF12895 Apc3: Anaphase-promot 97.7 0.00014 3E-09 49.3 6.0 81 255-337 2-83 (84)
149 TIGR02795 tol_pal_ybgF tol-pal 97.6 0.003 6.5E-08 45.5 13.1 100 172-271 3-105 (119)
150 KOG1914 mRNA cleavage and poly 97.6 0.027 5.8E-07 50.4 20.3 151 152-306 347-501 (656)
151 PLN02789 farnesyltranstransfer 97.6 0.038 8.3E-07 47.6 21.9 186 148-340 49-249 (320)
152 cd00189 TPR Tetratricopeptide 97.6 0.0016 3.5E-08 44.2 10.6 91 211-304 5-95 (100)
153 KOG3617 WD40 and TPR repeat-co 97.6 0.014 3E-07 54.8 18.6 164 112-304 812-994 (1416)
154 KOG2053 Mitochondrial inherita 97.6 0.075 1.6E-06 50.5 23.1 223 40-272 18-256 (932)
155 PF05843 Suf: Suppressor of fo 97.5 0.0033 7.1E-08 53.2 13.5 145 136-287 2-150 (280)
156 PF12895 Apc3: Anaphase-promot 97.5 0.00026 5.7E-09 47.9 5.6 81 219-302 2-83 (84)
157 CHL00033 ycf3 photosystem I as 97.4 0.0045 9.7E-08 48.0 12.4 64 171-234 35-100 (168)
158 KOG1914 mRNA cleavage and poly 97.4 0.033 7.1E-07 49.9 18.2 149 187-339 347-499 (656)
159 KOG1156 N-terminal acetyltrans 97.4 0.099 2.1E-06 48.0 28.6 66 275-342 367-435 (700)
160 PF13414 TPR_11: TPR repeat; P 97.4 0.0013 2.8E-08 42.5 7.3 66 277-343 3-69 (69)
161 PRK02603 photosystem I assembl 97.4 0.014 3E-07 45.5 14.3 88 172-261 36-125 (172)
162 PF14938 SNAP: Soluble NSF att 97.4 0.02 4.4E-07 48.5 16.3 19 109-127 44-62 (282)
163 PLN03088 SGT1, suppressor of 97.3 0.0036 7.9E-08 54.9 11.8 101 213-319 9-110 (356)
164 PF13432 TPR_16: Tetratricopep 97.3 0.0017 3.6E-08 41.3 7.1 57 285-342 5-61 (65)
165 CHL00033 ycf3 photosystem I as 97.3 0.0071 1.5E-07 46.9 12.0 113 188-303 16-139 (168)
166 PRK02603 photosystem I assembl 97.3 0.011 2.4E-07 46.0 12.9 89 206-297 35-126 (172)
167 PRK10153 DNA-binding transcrip 97.2 0.028 6.1E-07 51.8 16.8 60 243-304 421-480 (517)
168 PLN03088 SGT1, suppressor of 97.2 0.0094 2E-07 52.3 13.1 81 151-233 17-97 (356)
169 PRK10153 DNA-binding transcrip 97.2 0.024 5.2E-07 52.2 16.1 84 258-343 400-484 (517)
170 PF13281 DUF4071: Domain of un 97.2 0.14 3E-06 44.7 19.1 166 174-342 144-335 (374)
171 KOG3941 Intermediate in Toll s 97.1 0.0056 1.2E-07 50.1 9.4 104 93-197 61-185 (406)
172 PF12921 ATP13: Mitochondrial 97.1 0.0083 1.8E-07 43.8 9.5 97 205-322 1-98 (126)
173 PF03704 BTAD: Bacterial trans 97.1 0.014 3.1E-07 44.0 11.3 58 245-303 65-122 (146)
174 PF14938 SNAP: Soluble NSF att 97.1 0.017 3.7E-07 49.0 12.7 118 150-270 49-183 (282)
175 PRK10866 outer membrane biogen 97.0 0.14 3E-06 42.3 19.8 181 136-339 34-239 (243)
176 PF14559 TPR_19: Tetratricopep 97.0 0.002 4.3E-08 41.4 5.4 64 253-319 2-65 (68)
177 KOG1127 TPR repeat-containing 97.0 0.14 2.9E-06 49.6 18.8 180 152-341 474-659 (1238)
178 PF14559 TPR_19: Tetratricopep 97.0 0.0021 4.5E-08 41.3 5.3 51 218-270 3-53 (68)
179 KOG3617 WD40 and TPR repeat-co 96.9 0.11 2.3E-06 49.3 17.0 234 72-342 737-997 (1416)
180 PF12688 TPR_5: Tetratrico pep 96.9 0.063 1.4E-06 38.8 12.7 51 183-233 13-65 (120)
181 PF03704 BTAD: Bacterial trans 96.9 0.033 7.2E-07 42.0 11.9 109 170-280 2-139 (146)
182 PRK15363 pathogenicity island 96.9 0.021 4.6E-07 43.0 10.3 87 110-199 45-131 (157)
183 PRK15363 pathogenicity island 96.9 0.047 1E-06 41.2 12.0 93 211-306 40-132 (157)
184 KOG3941 Intermediate in Toll s 96.8 0.012 2.7E-07 48.2 9.1 102 132-233 64-186 (406)
185 PRK10803 tol-pal system protei 96.8 0.032 6.9E-07 46.6 11.9 98 206-306 143-246 (263)
186 KOG0553 TPR repeat-containing 96.8 0.014 3.1E-07 48.2 9.3 101 215-321 90-191 (304)
187 PF04840 Vps16_C: Vps16, C-ter 96.7 0.32 6.9E-06 41.9 26.5 111 172-303 178-288 (319)
188 PF13432 TPR_16: Tetratricopep 96.7 0.0096 2.1E-07 37.7 6.5 22 246-267 35-56 (65)
189 PF12688 TPR_5: Tetratrico pep 96.7 0.06 1.3E-06 38.9 11.0 105 212-323 7-117 (120)
190 KOG1127 TPR repeat-containing 96.6 0.53 1.1E-05 45.8 19.2 216 114-338 472-697 (1238)
191 PF13371 TPR_9: Tetratricopept 96.6 0.011 2.3E-07 38.5 6.2 56 250-307 3-59 (73)
192 PF13424 TPR_12: Tetratricopep 96.5 0.0089 1.9E-07 39.5 5.7 63 279-341 7-75 (78)
193 PRK10866 outer membrane biogen 96.5 0.37 8E-06 39.9 19.6 181 99-304 33-239 (243)
194 KOG2796 Uncharacterized conser 96.3 0.11 2.4E-06 42.4 11.4 143 172-320 178-327 (366)
195 PRK10803 tol-pal system protei 96.3 0.11 2.3E-06 43.5 11.9 98 172-271 144-246 (263)
196 KOG0624 dsRNA-activated protei 96.3 0.61 1.3E-05 39.8 21.0 261 33-306 74-370 (504)
197 PF09205 DUF1955: Domain of un 96.2 0.26 5.7E-06 35.8 11.8 66 243-309 87-152 (161)
198 PF13414 TPR_11: TPR repeat; P 96.2 0.029 6.3E-07 35.9 6.7 59 244-303 5-64 (69)
199 COG5107 RNA14 Pre-mRNA 3'-end 96.2 0.31 6.7E-06 43.1 14.1 129 136-270 398-530 (660)
200 PF13281 DUF4071: Domain of un 96.1 0.87 1.9E-05 39.9 19.0 94 102-197 145-252 (374)
201 KOG2796 Uncharacterized conser 96.1 0.29 6.2E-06 40.1 12.6 131 150-284 191-326 (366)
202 PF10300 DUF3808: Protein of u 96.0 0.61 1.3E-05 42.7 16.4 165 174-342 191-377 (468)
203 KOG0548 Molecular co-chaperone 96.0 1.1 2.4E-05 40.4 18.1 196 103-307 228-456 (539)
204 PF13170 DUF4003: Protein of u 96.0 0.85 1.8E-05 38.9 19.3 128 153-283 79-223 (297)
205 PF13424 TPR_12: Tetratricopep 96.0 0.032 6.9E-07 36.8 6.1 62 243-304 6-73 (78)
206 KOG0553 TPR repeat-containing 95.9 0.15 3.3E-06 42.4 10.7 102 179-286 89-191 (304)
207 PF13525 YfiO: Outer membrane 95.9 0.71 1.5E-05 37.0 17.8 63 100-165 7-71 (203)
208 PF13525 YfiO: Outer membrane 95.7 0.82 1.8E-05 36.6 16.3 184 136-333 7-199 (203)
209 PF04184 ST7: ST7 protein; In 95.7 0.96 2.1E-05 40.7 15.2 156 114-284 182-338 (539)
210 PF13371 TPR_9: Tetratricopept 95.7 0.11 2.3E-06 33.7 7.6 54 215-270 4-57 (73)
211 PF07079 DUF1347: Protein of u 95.6 1.6 3.5E-05 38.8 24.5 137 41-183 16-179 (549)
212 PF10300 DUF3808: Protein of u 95.6 1.9 4.1E-05 39.6 21.5 85 114-200 247-334 (468)
213 KOG2280 Vacuolar assembly/sort 95.5 2.3 5E-05 40.2 20.0 114 201-334 679-792 (829)
214 PLN03098 LPA1 LOW PSII ACCUMUL 95.5 0.32 6.9E-06 43.3 11.8 99 203-308 72-176 (453)
215 KOG1538 Uncharacterized conser 95.5 0.68 1.5E-05 42.9 13.8 201 116-340 616-845 (1081)
216 PF13929 mRNA_stabil: mRNA sta 95.4 1.3 2.9E-05 37.0 14.8 136 151-286 143-287 (292)
217 PF13929 mRNA_stabil: mRNA sta 95.4 1.1 2.3E-05 37.5 13.7 135 184-318 141-284 (292)
218 COG5107 RNA14 Pre-mRNA 3'-end 95.4 0.9 1.9E-05 40.3 13.7 146 99-253 397-546 (660)
219 COG4235 Cytochrome c biogenesi 95.2 1 2.3E-05 37.7 13.4 101 203-307 153-257 (287)
220 PF07035 Mic1: Colon cancer-as 95.2 1 2.2E-05 34.6 14.7 131 156-301 14-144 (167)
221 KOG2041 WD40 repeat protein [G 95.2 2.8 6E-05 39.5 16.9 93 203-306 849-952 (1189)
222 smart00299 CLH Clathrin heavy 95.1 0.96 2.1E-05 33.7 14.4 128 101-254 9-137 (140)
223 PF08631 SPO22: Meiosis protei 95.1 1.8 3.9E-05 36.6 24.5 221 112-337 5-271 (278)
224 COG4235 Cytochrome c biogenesi 95.1 0.68 1.5E-05 38.7 11.8 114 168-286 153-269 (287)
225 PF13170 DUF4003: Protein of u 94.9 2.2 4.7E-05 36.4 19.8 132 187-320 78-225 (297)
226 PLN03098 LPA1 LOW PSII ACCUMUL 94.8 0.54 1.2E-05 41.9 11.2 64 169-234 73-140 (453)
227 KOG4570 Uncharacterized conser 94.8 0.42 9.2E-06 40.2 9.7 99 169-270 62-163 (418)
228 COG1729 Uncharacterized protei 94.7 0.57 1.2E-05 38.7 10.5 95 173-270 144-243 (262)
229 KOG4162 Predicted calmodulin-b 94.7 4 8.7E-05 38.8 26.1 230 103-338 287-539 (799)
230 COG4700 Uncharacterized protei 94.7 1.6 3.5E-05 34.0 17.9 130 167-300 85-216 (251)
231 smart00299 CLH Clathrin heavy 94.6 1.4 2.9E-05 32.8 15.3 84 176-268 12-95 (140)
232 KOG1130 Predicted G-alpha GTPa 94.1 3.7 8.1E-05 36.2 14.2 134 207-340 196-343 (639)
233 PF09205 DUF1955: Domain of un 94.0 1.7 3.7E-05 31.7 11.9 138 113-274 15-152 (161)
234 PF13176 TPR_7: Tetratricopept 94.0 0.12 2.6E-06 28.2 3.7 27 314-340 1-27 (36)
235 COG4700 Uncharacterized protei 93.9 2.5 5.3E-05 33.0 17.9 129 202-335 85-216 (251)
236 PF02284 COX5A: Cytochrome c o 93.6 1.6 3.5E-05 30.1 9.1 60 189-250 28-87 (108)
237 KOG1920 IkappaB kinase complex 93.5 9.2 0.0002 38.5 19.3 81 212-302 971-1051(1265)
238 COG3629 DnrI DNA-binding trans 93.4 1 2.3E-05 37.7 9.8 76 208-285 155-235 (280)
239 KOG4555 TPR repeat-containing 93.3 2.3 5E-05 31.0 9.9 91 215-307 52-145 (175)
240 COG3629 DnrI DNA-binding trans 93.3 1.3 2.7E-05 37.2 10.0 78 243-321 154-236 (280)
241 KOG2280 Vacuolar assembly/sort 93.2 7.9 0.00017 36.9 20.3 287 34-339 440-771 (829)
242 PF07035 Mic1: Colon cancer-as 93.1 3.2 6.9E-05 31.9 16.1 135 191-340 14-148 (167)
243 COG3898 Uncharacterized membra 93.1 5.8 0.00013 34.8 21.4 246 76-338 97-355 (531)
244 KOG4555 TPR repeat-containing 93.0 2.6 5.7E-05 30.8 11.0 92 179-272 51-145 (175)
245 KOG2610 Uncharacterized conser 93.0 3.7 8E-05 35.2 12.2 153 151-306 118-276 (491)
246 PF13512 TPR_18: Tetratricopep 93.0 1.1 2.3E-05 33.4 8.2 83 242-326 11-96 (142)
247 PF00515 TPR_1: Tetratricopept 92.9 0.32 7E-06 25.8 4.2 31 313-343 2-32 (34)
248 PRK15331 chaperone protein Sic 92.7 2.6 5.6E-05 32.2 10.0 94 101-199 40-133 (165)
249 KOG4570 Uncharacterized conser 92.7 0.87 1.9E-05 38.4 8.1 105 128-235 57-164 (418)
250 PF04053 Coatomer_WDAD: Coatom 92.6 7.7 0.00017 35.3 14.8 153 150-338 275-428 (443)
251 COG4649 Uncharacterized protei 92.6 3.9 8.4E-05 31.6 13.2 139 170-310 58-200 (221)
252 PF13428 TPR_14: Tetratricopep 92.6 0.24 5.2E-06 28.4 3.6 28 314-341 3-30 (44)
253 PF04184 ST7: ST7 protein; In 92.4 8.3 0.00018 35.0 15.2 74 175-249 263-338 (539)
254 KOG2041 WD40 repeat protein [G 92.3 10 0.00023 36.0 17.2 60 279-338 1021-1083(1189)
255 KOG0543 FKBP-type peptidyl-pro 92.3 2 4.3E-05 37.6 10.1 126 212-340 214-354 (397)
256 PF09613 HrpB1_HrpK: Bacterial 92.3 3.3 7.1E-05 31.5 10.1 70 76-150 23-92 (160)
257 KOG1538 Uncharacterized conser 92.1 11 0.00023 35.6 16.7 22 285-306 825-846 (1081)
258 COG4649 Uncharacterized protei 92.0 4.6 0.0001 31.2 16.6 136 98-235 58-196 (221)
259 cd00923 Cyt_c_Oxidase_Va Cytoc 91.9 2.7 5.8E-05 28.8 8.3 63 186-250 22-84 (103)
260 COG1729 Uncharacterized protei 91.8 6.6 0.00014 32.6 12.2 97 207-306 143-244 (262)
261 PF07719 TPR_2: Tetratricopept 91.8 0.51 1.1E-05 24.9 4.2 30 314-343 3-32 (34)
262 PRK15331 chaperone protein Sic 91.8 4.7 0.0001 30.8 14.3 87 216-305 47-133 (165)
263 KOG0550 Molecular chaperone (D 91.6 9.2 0.0002 33.9 14.2 186 133-326 166-371 (486)
264 PF13512 TPR_18: Tetratricopep 91.5 4.6 9.9E-05 30.1 11.2 75 216-290 20-95 (142)
265 KOG2114 Vacuolar assembly/sort 91.0 4.6 0.0001 38.8 11.6 136 112-268 380-516 (933)
266 KOG0543 FKBP-type peptidyl-pro 90.9 6.4 0.00014 34.6 11.7 124 178-305 215-354 (397)
267 PF10602 RPN7: 26S proteasome 90.8 6.1 0.00013 30.8 10.8 95 207-302 37-138 (177)
268 PF04053 Coatomer_WDAD: Coatom 90.6 13 0.00029 33.8 15.4 153 113-302 274-427 (443)
269 KOG1550 Extracellular protein 90.4 16 0.00035 34.4 15.9 180 153-341 229-426 (552)
270 PF13176 TPR_7: Tetratricopept 90.4 0.7 1.5E-05 25.1 3.8 26 279-304 1-26 (36)
271 PRK11906 transcriptional regul 90.2 14 0.0003 33.4 13.8 149 115-267 273-432 (458)
272 KOG1585 Protein required for f 90.1 9.3 0.0002 31.4 16.6 79 109-198 40-118 (308)
273 PF13181 TPR_8: Tetratricopept 90.0 0.9 2E-05 24.0 4.1 29 314-342 3-31 (34)
274 PF04097 Nic96: Nup93/Nic96; 90.0 19 0.0004 34.5 15.4 90 177-271 264-356 (613)
275 PF10602 RPN7: 26S proteasome 89.8 3.6 7.8E-05 32.1 8.7 97 242-338 36-139 (177)
276 TIGR02561 HrpB1_HrpK type III 89.8 4.3 9.4E-05 30.4 8.5 52 76-130 23-74 (153)
277 PF13428 TPR_14: Tetratricopep 89.7 1.5 3.3E-05 25.0 5.1 26 281-306 5-30 (44)
278 PF00637 Clathrin: Region in C 89.7 0.074 1.6E-06 39.9 -0.7 120 211-338 12-135 (143)
279 PF13374 TPR_10: Tetratricopep 89.5 0.91 2E-05 25.2 4.1 28 313-340 3-30 (42)
280 cd00923 Cyt_c_Oxidase_Va Cytoc 89.4 3.9 8.5E-05 28.0 7.3 45 224-269 25-69 (103)
281 PF02284 COX5A: Cytochrome c o 89.2 4.8 0.0001 27.9 7.7 77 244-321 10-88 (108)
282 KOG1920 IkappaB kinase complex 89.0 28 0.00061 35.3 17.5 49 210-267 1003-1051(1265)
283 COG3947 Response regulator con 89.0 13 0.00028 31.4 15.5 85 109-195 96-190 (361)
284 PF13762 MNE1: Mitochondrial s 88.8 8.2 0.00018 28.9 10.8 49 171-219 79-128 (145)
285 COG0457 NrfG FOG: TPR repeat [ 88.5 11 0.00023 29.8 25.5 192 109-306 68-265 (291)
286 PF11207 DUF2989: Protein of u 88.4 8.4 0.00018 30.6 9.7 79 181-261 117-197 (203)
287 KOG2114 Vacuolar assembly/sort 88.3 21 0.00046 34.7 13.7 182 112-317 346-530 (933)
288 PF00637 Clathrin: Region in C 88.2 0.23 5E-06 37.2 1.1 131 175-328 11-141 (143)
289 PF04097 Nic96: Nup93/Nic96; 88.0 5.6 0.00012 37.9 10.3 26 278-303 501-531 (613)
290 COG3898 Uncharacterized membra 87.4 20 0.00043 31.7 21.4 249 44-306 133-392 (531)
291 COG4105 ComL DNA uptake lipopr 87.0 16 0.00035 30.2 19.8 66 133-200 33-100 (254)
292 COG1747 Uncharacterized N-term 86.1 28 0.0006 32.0 21.1 165 98-271 65-234 (711)
293 PF07079 DUF1347: Protein of u 85.9 26 0.00057 31.6 26.8 293 35-338 132-521 (549)
294 COG0457 NrfG FOG: TPR repeat [ 85.7 15 0.00033 28.8 24.0 225 114-342 37-266 (291)
295 KOG2610 Uncharacterized conser 85.5 23 0.0005 30.6 15.7 153 113-269 116-274 (491)
296 PF02259 FAT: FAT domain; Int 85.1 25 0.00054 30.6 16.4 70 240-309 144-216 (352)
297 PF11207 DUF2989: Protein of u 85.0 12 0.00026 29.7 8.9 78 216-296 117-197 (203)
298 PF13374 TPR_10: Tetratricopep 84.8 2.7 6E-05 23.1 4.3 25 244-268 4-28 (42)
299 PF08631 SPO22: Meiosis protei 84.7 23 0.0005 30.0 24.1 198 100-302 37-271 (278)
300 PF13431 TPR_17: Tetratricopep 84.3 1.3 2.8E-05 23.7 2.5 22 311-332 12-33 (34)
301 PRK11906 transcriptional regul 84.3 32 0.0007 31.2 14.0 159 172-337 252-432 (458)
302 KOG4648 Uncharacterized conser 84.2 4.7 0.0001 34.7 6.8 82 213-305 104-186 (536)
303 PF00515 TPR_1: Tetratricopept 84.1 3 6.6E-05 21.9 4.0 20 248-267 7-26 (34)
304 PRK15180 Vi polysaccharide bio 83.2 15 0.00032 33.3 9.7 123 216-342 299-421 (831)
305 PF11846 DUF3366: Domain of un 82.9 6.5 0.00014 31.1 7.1 52 254-305 120-172 (193)
306 PF10579 Rapsyn_N: Rapsyn N-te 82.4 6.4 0.00014 25.9 5.4 46 254-299 18-65 (80)
307 PF07721 TPR_4: Tetratricopept 82.0 1.8 3.9E-05 21.4 2.3 21 316-336 5-25 (26)
308 PF13762 MNE1: Mitochondrial s 81.9 19 0.00042 26.9 12.1 84 245-328 42-131 (145)
309 COG4455 ImpE Protein of avirul 81.7 14 0.00031 29.8 8.1 78 173-251 3-81 (273)
310 COG4105 ComL DNA uptake lipopr 81.6 29 0.00063 28.7 19.0 186 97-303 33-230 (254)
311 COG3947 Response regulator con 81.5 32 0.00069 29.2 16.0 70 245-315 282-356 (361)
312 PF10345 Cohesin_load: Cohesin 81.0 54 0.0012 31.5 18.8 195 98-303 29-251 (608)
313 PF10366 Vps39_1: Vacuolar sor 80.7 16 0.00035 25.8 7.6 27 279-305 41-67 (108)
314 PHA02875 ankyrin repeat protei 80.6 35 0.00076 30.7 11.8 176 109-313 41-231 (413)
315 PF10579 Rapsyn_N: Rapsyn N-te 80.4 6.5 0.00014 25.8 4.9 51 284-335 14-66 (80)
316 PF11846 DUF3366: Domain of un 80.0 10 0.00022 30.0 7.2 53 218-270 120-172 (193)
317 KOG4077 Cytochrome c oxidase, 79.8 15 0.00032 26.7 6.9 59 189-249 67-125 (149)
318 PF13174 TPR_6: Tetratricopept 79.6 3.8 8.2E-05 21.1 3.3 23 318-340 6-28 (33)
319 COG4455 ImpE Protein of avirul 79.4 23 0.00049 28.7 8.6 77 208-286 3-81 (273)
320 PF07719 TPR_2: Tetratricopept 78.7 6.1 0.00013 20.5 4.0 15 287-301 11-25 (34)
321 KOG1550 Extracellular protein 78.6 61 0.0013 30.7 18.5 184 116-308 228-428 (552)
322 KOG2297 Predicted translation 78.3 42 0.00091 28.7 14.9 76 212-297 261-341 (412)
323 TIGR03504 FimV_Cterm FimV C-te 78.1 5 0.00011 23.0 3.5 23 284-306 6-28 (44)
324 COG5187 RPN7 26S proteasome re 78.0 42 0.00091 28.4 13.3 70 206-275 115-188 (412)
325 COG1747 Uncharacterized N-term 77.9 58 0.0013 30.1 17.0 179 132-321 63-248 (711)
326 KOG4642 Chaperone-dependent E3 77.3 20 0.00042 29.4 7.8 103 39-144 18-126 (284)
327 PRK10564 maltose regulon perip 77.2 6.4 0.00014 33.3 5.3 37 239-275 253-290 (303)
328 PF06552 TOM20_plant: Plant sp 76.9 33 0.00072 26.8 8.8 20 215-234 37-56 (186)
329 KOG0276 Vesicle coat complex C 76.8 68 0.0015 30.3 12.2 97 113-231 650-746 (794)
330 PF09613 HrpB1_HrpK: Bacterial 76.7 31 0.00068 26.3 12.7 51 112-165 22-73 (160)
331 PF07163 Pex26: Pex26 protein; 76.1 38 0.00082 28.5 9.3 88 211-300 88-181 (309)
332 KOG0276 Vesicle coat complex C 75.5 41 0.0009 31.6 10.2 81 205-301 665-745 (794)
333 KOG0687 26S proteasome regulat 75.4 53 0.0012 28.3 13.6 111 208-320 106-224 (393)
334 KOG1464 COP9 signalosome, subu 74.9 49 0.0011 27.7 12.9 159 185-343 41-222 (440)
335 PF11848 DUF3368: Domain of un 74.9 13 0.00028 21.7 4.8 32 289-320 14-45 (48)
336 smart00028 TPR Tetratricopepti 74.7 6.1 0.00013 19.4 3.3 26 315-340 4-29 (34)
337 COG2976 Uncharacterized protei 74.0 43 0.00092 26.6 12.6 142 155-307 38-189 (207)
338 COG3118 Thioredoxin domain-con 73.9 55 0.0012 27.8 16.2 144 180-329 143-289 (304)
339 COG5187 RPN7 26S proteasome re 73.8 55 0.0012 27.8 14.4 123 76-199 92-220 (412)
340 PF02259 FAT: FAT domain; Int 73.5 61 0.0013 28.2 18.8 67 204-271 144-213 (352)
341 KOG4234 TPR repeat-containing 73.5 45 0.00098 26.7 9.0 87 214-307 103-198 (271)
342 KOG4077 Cytochrome c oxidase, 73.4 16 0.00035 26.5 5.7 63 257-320 64-126 (149)
343 TIGR02561 HrpB1_HrpK type III 73.0 38 0.00082 25.5 9.4 63 113-183 23-88 (153)
344 KOG1585 Protein required for f 72.6 54 0.0012 27.2 10.8 144 167-337 23-175 (308)
345 PF11663 Toxin_YhaV: Toxin wit 72.2 4.5 9.9E-05 29.6 2.9 31 112-144 107-137 (140)
346 TIGR03504 FimV_Cterm FimV C-te 72.0 8.5 0.00018 22.1 3.5 26 247-272 4-29 (44)
347 COG2909 MalT ATP-dependent tra 72.0 1.1E+02 0.0023 30.4 22.5 222 112-336 427-683 (894)
348 PF07163 Pex26: Pex26 protein; 71.5 56 0.0012 27.6 9.2 87 142-229 90-181 (309)
349 KOG4279 Serine/threonine prote 71.2 1.1E+02 0.0023 30.0 13.6 185 154-343 181-397 (1226)
350 KOG4648 Uncharacterized conser 71.2 20 0.00043 31.1 6.8 79 179-268 105-184 (536)
351 COG2976 Uncharacterized protei 71.1 50 0.0011 26.2 13.1 50 287-338 136-185 (207)
352 PF11848 DUF3368: Domain of un 71.1 17 0.00036 21.3 4.7 30 150-179 16-45 (48)
353 COG0735 Fur Fe2+/Zn2+ uptake r 70.9 26 0.00056 26.3 6.9 62 264-326 8-69 (145)
354 PF11838 ERAP1_C: ERAP1-like C 70.7 69 0.0015 27.6 19.6 110 187-302 146-262 (324)
355 COG4785 NlpI Lipoprotein NlpI, 70.1 58 0.0013 26.5 13.8 158 32-200 100-266 (297)
356 KOG0687 26S proteasome regulat 70.0 73 0.0016 27.6 15.1 120 78-200 83-210 (393)
357 PF14689 SPOB_a: Sensor_kinase 69.4 13 0.00029 23.1 4.3 23 282-304 28-50 (62)
358 KOG0403 Neoplastic transformat 69.3 90 0.0019 28.3 14.2 75 209-289 512-586 (645)
359 PRK15180 Vi polysaccharide bio 69.1 87 0.0019 28.7 10.5 117 183-304 301-418 (831)
360 KOG2908 26S proteasome regulat 68.6 74 0.0016 27.6 9.5 71 174-244 78-157 (380)
361 KOG1130 Predicted G-alpha GTPa 67.6 22 0.00048 31.6 6.5 266 38-305 24-343 (639)
362 PHA02875 ankyrin repeat protei 67.4 95 0.0021 27.9 15.3 208 38-277 6-230 (413)
363 KOG1941 Acetylcholine receptor 67.3 89 0.0019 27.6 11.1 58 211-268 127-188 (518)
364 cd08819 CARD_MDA5_2 Caspase ac 66.9 36 0.00079 22.9 7.0 15 219-233 49-63 (88)
365 cd00280 TRFH Telomeric Repeat 66.9 47 0.001 26.1 7.4 64 222-289 85-155 (200)
366 COG3118 Thioredoxin domain-con 65.9 84 0.0018 26.8 17.2 154 133-294 133-289 (304)
367 PRK10564 maltose regulon perip 65.1 14 0.0003 31.3 4.8 46 273-318 252-298 (303)
368 PF11663 Toxin_YhaV: Toxin wit 65.0 6.2 0.00013 28.9 2.3 28 185-214 109-136 (140)
369 PF08311 Mad3_BUB1_I: Mad3/BUB 64.9 52 0.0011 24.0 8.4 44 118-161 81-124 (126)
370 PF10345 Cohesin_load: Cohesin 64.8 1.4E+02 0.0029 28.8 19.2 169 172-341 60-254 (608)
371 PF14689 SPOB_a: Sensor_kinase 64.8 9.9 0.00021 23.7 3.0 46 293-340 6-51 (62)
372 COG5159 RPN6 26S proteasome re 64.1 90 0.002 26.5 10.3 46 179-224 11-63 (421)
373 cd08819 CARD_MDA5_2 Caspase ac 64.1 42 0.00091 22.6 6.5 67 261-333 21-87 (88)
374 COG5159 RPN6 26S proteasome re 63.8 92 0.002 26.5 9.0 31 213-244 10-40 (421)
375 KOG1114 Tripeptidyl peptidase 63.5 1.7E+02 0.0037 29.5 12.2 52 205-256 1230-1281(1304)
376 COG0735 Fur Fe2+/Zn2+ uptake r 63.1 61 0.0013 24.3 7.5 63 121-185 7-69 (145)
377 PF04190 DUF410: Protein of un 63.0 74 0.0016 26.6 8.8 106 217-335 1-113 (260)
378 COG5108 RPO41 Mitochondrial DN 62.5 67 0.0014 30.7 8.8 120 140-268 33-159 (1117)
379 COG2178 Predicted RNA-binding 62.4 77 0.0017 25.1 10.6 108 223-341 20-150 (204)
380 COG5108 RPO41 Mitochondrial DN 61.6 48 0.001 31.6 7.8 92 211-305 33-131 (1117)
381 COG2137 OraA Uncharacterized p 61.0 77 0.0017 24.7 12.4 106 158-267 57-163 (174)
382 PF14853 Fis1_TPR_C: Fis1 C-te 60.2 16 0.00035 21.9 3.2 26 318-343 7-32 (53)
383 PF02847 MA3: MA3 domain; Int 60.1 57 0.0012 22.9 7.3 20 178-197 9-28 (113)
384 PF09454 Vps23_core: Vps23 cor 59.3 41 0.0009 21.2 5.1 48 240-288 6-53 (65)
385 PF09454 Vps23_core: Vps23 cor 58.6 32 0.00069 21.7 4.5 55 273-328 4-58 (65)
386 TIGR02508 type_III_yscG type I 58.1 61 0.0013 22.6 7.5 87 221-316 20-106 (115)
387 KOG4567 GTPase-activating prot 57.6 85 0.0019 26.9 7.9 43 227-270 264-306 (370)
388 cd00280 TRFH Telomeric Repeat 57.3 82 0.0018 24.8 7.3 48 187-234 85-139 (200)
389 PF12862 Apc5: Anaphase-promot 57.0 59 0.0013 22.1 6.5 19 287-305 51-69 (94)
390 KOG4567 GTPase-activating prot 56.4 76 0.0016 27.2 7.5 71 191-267 263-343 (370)
391 PRK09462 fur ferric uptake reg 55.8 85 0.0018 23.5 7.5 62 125-187 7-68 (148)
392 PRK11639 zinc uptake transcrip 55.1 73 0.0016 24.6 7.0 55 237-292 21-75 (169)
393 smart00638 LPD_N Lipoprotein N 54.6 2E+02 0.0043 27.4 22.0 60 99-166 310-369 (574)
394 PF12926 MOZART2: Mitotic-spin 54.2 65 0.0014 21.7 7.9 41 157-197 29-69 (88)
395 KOG2659 LisH motif-containing 53.7 90 0.002 25.4 7.3 98 167-267 22-128 (228)
396 KOG2908 26S proteasome regulat 52.4 1.6E+02 0.0035 25.7 9.9 69 210-278 79-156 (380)
397 PRK08691 DNA polymerase III su 52.1 2.4E+02 0.0052 27.6 11.4 86 187-276 180-279 (709)
398 PRK11639 zinc uptake transcrip 51.4 78 0.0017 24.5 6.6 60 126-187 17-76 (169)
399 PF02631 RecX: RecX family; I 51.3 89 0.0019 22.4 12.1 26 119-144 11-36 (121)
400 PF04762 IKI3: IKI3 family; I 50.2 2.6E+02 0.0056 28.6 11.4 117 112-234 706-842 (928)
401 PF10366 Vps39_1: Vacuolar sor 49.9 53 0.0011 23.2 5.0 27 173-199 41-67 (108)
402 PRK09462 fur ferric uptake reg 49.8 1E+02 0.0022 23.2 6.9 16 258-273 33-48 (148)
403 PF08870 DUF1832: Domain of un 49.3 45 0.00097 23.8 4.5 28 223-250 6-34 (113)
404 PRK14700 recombination factor 49.2 1.7E+02 0.0037 25.1 10.1 82 177-259 129-218 (300)
405 PRK14958 DNA polymerase III su 49.2 2.3E+02 0.005 26.6 11.7 86 188-277 181-280 (509)
406 KOG2659 LisH motif-containing 48.8 1.5E+02 0.0032 24.2 9.1 97 203-302 23-128 (228)
407 cd07153 Fur_like Ferric uptake 48.0 45 0.00098 23.6 4.6 45 248-292 6-50 (116)
408 PRK09857 putative transposase; 47.1 1.8E+02 0.004 24.8 9.5 63 210-274 210-272 (292)
409 PF02847 MA3: MA3 domain; Int 46.7 66 0.0014 22.6 5.3 62 210-274 6-69 (113)
410 KOG2063 Vacuolar assembly/sort 46.4 2E+02 0.0044 28.9 9.7 161 172-338 505-710 (877)
411 PF07678 A2M_comp: A-macroglob 46.3 1.4E+02 0.0031 24.6 7.9 22 285-306 200-221 (246)
412 PF11817 Foie-gras_1: Foie gra 45.9 1.2E+02 0.0026 25.1 7.4 58 282-339 183-245 (247)
413 PF03745 DUF309: Domain of unk 45.9 73 0.0016 19.8 5.4 49 287-335 9-62 (62)
414 PHA03100 ankyrin repeat protei 45.8 2.4E+02 0.0053 25.8 14.1 214 36-276 37-277 (480)
415 PF14669 Asp_Glu_race_2: Putat 45.6 1.5E+02 0.0034 23.5 13.3 57 281-337 136-206 (233)
416 PRK09687 putative lyase; Provi 44.9 1.9E+02 0.0042 24.5 24.2 136 170-322 141-277 (280)
417 KOG0550 Molecular chaperone (D 44.4 2.4E+02 0.0053 25.5 19.6 165 97-271 166-350 (486)
418 PF01475 FUR: Ferric uptake re 44.2 41 0.00089 24.1 3.9 47 282-328 12-58 (120)
419 PF13934 ELYS: Nuclear pore co 44.1 1.8E+02 0.0038 23.8 10.5 107 173-291 78-186 (226)
420 PRK14956 DNA polymerase III su 44.0 2.7E+02 0.0059 25.9 11.5 45 188-234 183-228 (484)
421 COG2909 MalT ATP-dependent tra 43.9 3.5E+02 0.0076 27.1 22.5 188 150-341 429-647 (894)
422 PF02607 B12-binding_2: B12 bi 43.7 65 0.0014 20.8 4.5 37 113-149 14-50 (79)
423 PF12926 MOZART2: Mitotic-spin 43.6 1E+02 0.0022 20.8 8.2 42 192-233 29-70 (88)
424 KOG3807 Predicted membrane pro 42.9 1.9E+02 0.004 25.3 7.9 58 248-305 281-339 (556)
425 PF11817 Foie-gras_1: Foie gra 42.8 79 0.0017 26.2 5.9 57 246-302 182-243 (247)
426 PF06252 DUF1018: Protein of u 42.2 1.3E+02 0.0027 21.6 6.1 35 98-132 2-40 (119)
427 KOG3807 Predicted membrane pro 41.6 2.4E+02 0.0052 24.6 11.7 59 212-270 281-339 (556)
428 COG5210 GTPase-activating prot 41.4 3E+02 0.0065 25.7 10.7 61 190-251 361-421 (496)
429 PF08311 Mad3_BUB1_I: Mad3/BUB 40.9 1.4E+02 0.003 21.7 9.0 43 295-337 81-124 (126)
430 TIGR03184 DNA_S_dndE DNA sulfu 40.4 81 0.0018 22.2 4.6 26 223-248 5-31 (105)
431 PRK07003 DNA polymerase III su 39.7 4E+02 0.0087 26.6 11.2 86 187-275 180-278 (830)
432 PF06957 COPI_C: Coatomer (COP 39.5 2.1E+02 0.0046 26.0 8.1 52 260-311 281-334 (422)
433 PHA02989 ankyrin repeat protei 39.2 3.2E+02 0.0069 25.4 10.8 12 158-169 90-101 (494)
434 PF02184 HAT: HAT (Half-A-TPR) 38.5 54 0.0012 17.4 2.6 21 258-280 3-23 (32)
435 TIGR03581 EF_0839 conserved hy 38.4 1.1E+02 0.0023 24.8 5.4 44 296-339 191-235 (236)
436 PLN00047 photosystem II biogen 38.0 2.5E+02 0.0054 23.8 13.0 30 119-150 107-136 (283)
437 PF12862 Apc5: Anaphase-promot 37.7 1.3E+02 0.0028 20.4 6.0 22 249-270 48-69 (94)
438 PF07575 Nucleopor_Nup85: Nup8 37.6 1.1E+02 0.0024 29.0 6.7 62 205-269 404-465 (566)
439 cd07153 Fur_like Ferric uptake 37.5 74 0.0016 22.5 4.4 32 154-185 18-49 (116)
440 PRK12402 replication factor C 37.3 2.7E+02 0.0059 24.0 12.4 23 289-311 263-286 (337)
441 PF09868 DUF2095: Uncharacteri 37.3 1.4E+02 0.0031 21.3 5.3 33 109-142 70-102 (128)
442 PRK06645 DNA polymerase III su 37.3 3.6E+02 0.0077 25.3 10.7 87 187-276 189-291 (507)
443 PF09986 DUF2225: Uncharacteri 37.3 2.2E+02 0.0048 23.0 9.3 96 215-310 86-198 (214)
444 KOG2063 Vacuolar assembly/sort 36.9 4.6E+02 0.01 26.5 14.8 26 102-128 507-532 (877)
445 PF04348 LppC: LppC putative l 36.7 12 0.00025 35.2 0.0 90 212-302 30-123 (536)
446 KOG0890 Protein kinase of the 36.4 5.5E+02 0.012 29.2 11.5 149 176-335 1388-1541(2382)
447 COG3107 LppC Putative lipoprot 36.3 3.1E+02 0.0067 25.8 8.6 84 213-298 70-157 (604)
448 PRK09857 putative transposase; 35.9 2.8E+02 0.0061 23.7 9.4 66 245-311 209-274 (292)
449 smart00804 TAP_C C-terminal do 35.8 38 0.00083 21.2 2.2 16 186-201 40-55 (63)
450 PRK14963 DNA polymerase III su 35.8 3.8E+02 0.0082 25.2 10.4 29 282-311 247-275 (504)
451 KOG0991 Replication factor C, 35.0 2.6E+02 0.0057 23.2 9.3 139 33-182 132-283 (333)
452 COG2405 Predicted nucleic acid 34.6 81 0.0018 23.4 3.9 43 137-181 112-154 (157)
453 KOG1258 mRNA processing protei 34.5 4.1E+02 0.0089 25.2 17.8 89 111-200 90-180 (577)
454 cd02679 MIT_spastin MIT: domai 34.4 36 0.00078 22.5 2.0 45 290-341 21-68 (79)
455 PF04090 RNA_pol_I_TF: RNA pol 34.2 2.4E+02 0.0053 22.5 7.2 61 243-304 42-103 (199)
456 KOG4234 TPR repeat-containing 33.9 2.5E+02 0.0055 22.6 9.3 95 178-278 102-202 (271)
457 KOG3364 Membrane protein invol 33.6 1.5E+02 0.0032 22.1 5.1 69 239-307 29-101 (149)
458 cd08790 DED_DEDD Death Effecto 33.4 1.6E+02 0.0035 20.3 5.0 70 13-82 3-77 (97)
459 PF14669 Asp_Glu_race_2: Putat 32.9 2.6E+02 0.0055 22.4 14.7 57 246-302 136-206 (233)
460 PLN03025 replication factor C 32.9 3.2E+02 0.007 23.6 13.5 116 223-342 161-289 (319)
461 PF10475 DUF2450: Protein of u 32.6 3.2E+02 0.0068 23.3 9.6 119 212-337 104-222 (291)
462 PRK14951 DNA polymerase III su 32.5 4.7E+02 0.01 25.3 12.5 84 188-275 186-283 (618)
463 TIGR02508 type_III_yscG type I 32.3 1.8E+02 0.0039 20.4 7.9 48 180-233 48-95 (115)
464 PF07378 FlbT: Flagellar prote 32.3 2E+02 0.0044 21.0 6.0 66 239-304 49-118 (126)
465 PF02151 UVR: UvrB/uvrC motif; 32.1 89 0.0019 16.8 3.9 28 315-342 7-34 (36)
466 KOG0307 Vesicle coat complex C 31.6 5.9E+02 0.013 26.2 12.0 211 25-270 481-693 (1049)
467 KOG1498 26S proteasome regulat 31.4 3.9E+02 0.0084 24.0 13.9 90 210-307 135-242 (439)
468 KOG1941 Acetylcholine receptor 31.1 3.9E+02 0.0083 23.9 15.5 131 175-305 126-274 (518)
469 PF09477 Type_III_YscG: Bacter 31.0 2E+02 0.0043 20.5 8.3 16 218-233 81-96 (116)
470 KOG2297 Predicted translation 30.5 3.6E+02 0.0078 23.4 16.1 81 247-332 260-341 (412)
471 PRK13342 recombination factor 30.3 4.1E+02 0.009 24.0 19.3 32 256-287 244-275 (413)
472 smart00386 HAT HAT (Half-A-TPR 30.2 78 0.0017 15.6 3.5 12 222-233 3-14 (33)
473 KOG2066 Vacuolar assembly/sort 30.1 5.6E+02 0.012 25.4 11.4 23 282-304 510-532 (846)
474 PRK07764 DNA polymerase III su 30.1 5.9E+02 0.013 25.7 10.9 94 221-318 180-288 (824)
475 TIGR01503 MthylAspMut_E methyl 29.9 4.5E+02 0.0097 24.2 8.6 182 115-327 29-241 (480)
476 PRK14135 recX recombination re 29.9 3.3E+02 0.0071 22.7 19.6 83 146-231 82-164 (263)
477 KOG4507 Uncharacterized conser 29.8 5.1E+02 0.011 24.9 10.2 137 132-271 568-705 (886)
478 COG2405 Predicted nucleic acid 29.4 1.2E+02 0.0025 22.6 4.1 32 289-320 121-152 (157)
479 PF14162 YozD: YozD-like prote 29.3 1.3E+02 0.0028 17.8 4.2 17 295-311 13-29 (57)
480 smart00777 Mad3_BUB1_I Mad3/BU 29.3 2.3E+02 0.005 20.7 7.3 74 116-195 49-123 (125)
481 smart00031 DED Death effector 29.2 1.3E+02 0.0028 19.8 4.0 38 47-84 37-76 (79)
482 PF13934 ELYS: Nuclear pore co 29.2 3.2E+02 0.0069 22.3 11.0 114 128-256 72-186 (226)
483 PF02607 B12-binding_2: B12 bi 29.1 80 0.0017 20.4 3.1 38 254-291 13-50 (79)
484 PLN03060 inositol phosphatase- 28.5 3.1E+02 0.0068 22.0 12.3 30 119-150 54-83 (206)
485 PHA02798 ankyrin-like protein; 28.0 4.9E+02 0.011 24.1 10.9 15 191-205 89-103 (489)
486 PHA02798 ankyrin-like protein; 28.0 3E+02 0.0064 25.5 7.7 16 156-171 89-104 (489)
487 PRK14963 DNA polymerase III su 27.9 5.1E+02 0.011 24.3 10.9 85 117-205 178-275 (504)
488 PF11768 DUF3312: Protein of u 27.8 5.2E+02 0.011 24.4 12.0 60 175-234 412-472 (545)
489 PF01475 FUR: Ferric uptake re 27.3 85 0.0018 22.4 3.3 44 141-185 13-56 (120)
490 PF10255 Paf67: RNA polymerase 27.3 1.2E+02 0.0026 27.3 4.7 61 243-303 123-190 (404)
491 PF07064 RIC1: RIC1; InterPro 27.0 3.8E+02 0.0082 22.5 15.8 61 282-342 184-250 (258)
492 PRK14958 DNA polymerase III su 26.7 5.4E+02 0.012 24.2 11.6 75 163-241 192-279 (509)
493 PF07575 Nucleopor_Nup85: Nup8 26.5 2.9E+02 0.0062 26.4 7.4 28 256-283 509-536 (566)
494 PF01347 Vitellogenin_N: Lipop 26.4 5.8E+02 0.013 24.5 18.0 60 101-166 348-407 (618)
495 COG0320 LipA Lipoate synthase 26.3 68 0.0015 27.0 2.7 81 115-202 157-242 (306)
496 KOG0991 Replication factor C, 26.2 3.8E+02 0.0083 22.3 12.8 60 217-277 203-273 (333)
497 PRK11905 bifunctional proline 26.2 2.9E+02 0.0062 29.3 7.7 22 287-308 179-200 (1208)
498 PRK00117 recX recombination re 26.1 2.9E+02 0.0063 20.8 13.7 31 100-133 12-42 (157)
499 cd07229 Pat_TGL3_like Triacylg 26.0 4.9E+02 0.011 23.5 8.5 28 305-332 179-206 (391)
500 smart00544 MA3 Domain in DAP-5 25.9 2.4E+02 0.0051 19.7 10.0 61 209-272 5-67 (113)
No 1
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=5.5e-54 Score=410.66 Aligned_cols=320 Identities=11% Similarity=0.069 Sum_probs=172.9
Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCC
Q 046547 17 PCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLR 93 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 93 (343)
+++..+...+..|+..+|+.+|.+|++.|+++.|.++|++|.+.|+.||..+| +..+++.|+.+.+.++++.+.. .
T Consensus 458 ~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~-~ 536 (1060)
T PLN03218 458 RVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRS-K 536 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH-c
Confidence 34444444444455555555555555555555555555555555555555554 3344444444444444444332 2
Q ss_pred CCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH
Q 046547 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLR--SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 94 ~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~--~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 171 (343)
+..||..+|+++|. +|++.|++++|.++|++|.+ .|+.||..+|+++|.+|++.| ++++|.++|++|.+.|+.|+.
T Consensus 537 Gv~PD~vTYnsLI~-a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G-~ldeA~elf~~M~e~gi~p~~ 614 (1060)
T PLN03218 537 NVKPDRVVFNALIS-ACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAG-QVDRAKEVYQMIHEYNIKGTP 614 (1060)
T ss_pred CCCCCHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcCCCCCh
Confidence 34455555555554 44455555555555555543 345555555555555555543 355555555555555555555
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
.+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+ .|+.||..+|++||.+
T Consensus 615 ~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k-~G~~pd~~tynsLI~a 693 (1060)
T PLN03218 615 EVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK-QGIKLGTVSYSSLMGA 693 (1060)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555554 2555555555555555
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 331 (343)
|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|
T Consensus 694 y~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A 773 (1060)
T PLN03218 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVG 773 (1060)
T ss_pred HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 55555555555555555555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHHHHh
Q 046547 332 TVVRQRFAE 340 (343)
Q Consensus 332 ~~~~~~m~~ 340 (343)
.+++++|.+
T Consensus 774 ~~l~~~M~k 782 (1060)
T PLN03218 774 LDLLSQAKE 782 (1060)
T ss_pred HHHHHHHHH
Confidence 555555543
No 2
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.1e-53 Score=408.63 Aligned_cols=309 Identities=15% Similarity=0.178 Sum_probs=295.9
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
|+..+|+.+|.+|++.|+++.|.++|+.|.+.|+.||..+| +..+++.|+.+.+.++++.+.+ .+..||..+|+++
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~-~Gv~PdvvTynaL 513 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVN-AGVEANVHTFGAL 513 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHH-cCCCCCHHHHHHH
Confidence 89999999999999999999999999999999999999998 6677788888888888888765 4678999999999
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHh--cCCccCHhhHHHHHHHHHc
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS--IGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~--~g~~~~~~~~~~ll~~~~~ 183 (343)
|. +|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.+ ++++|.++|++|.. .|+.||..+|+.+|.+|++
T Consensus 514 I~-gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G-~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k 591 (1060)
T PLN03218 514 ID-GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSG-AVDRAFDVLAEMKAETHPIDPDHITVGALMKACAN 591 (1060)
T ss_pred HH-HHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 97 78899999999999999999999999999999999999986 69999999999976 6899999999999999999
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
.|++++|.++|++|.+.|+.|+..+|+++|.+|++.|++++|.++|++|.++ |+.||..+|+++|.+|++.|++++|.+
T Consensus 592 ~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-Gv~PD~~TynsLI~a~~k~G~~eeA~~ 670 (1060)
T PLN03218 592 AGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-GVKPDEVFFSALVDVAGHAGDLDKAFE 670 (1060)
T ss_pred CCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999985 999999999999999999999999999
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 264 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
++++|.+.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.
T Consensus 671 l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~ 748 (1060)
T PLN03218 671 ILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748 (1060)
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999864
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=1.5e-48 Score=369.15 Aligned_cols=311 Identities=14% Similarity=0.154 Sum_probs=223.3
Q ss_pred hchhhhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHh----------------------
Q 046547 13 VNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFL---------------------- 70 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---------------------- 70 (343)
....+++..++ .|+..+|+.+|.+|++.|++++|+++|++|...|..|+..+|.
T Consensus 175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~ 250 (697)
T PLN03081 175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV 250 (697)
T ss_pred HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 33444455554 2677789999999999999999999999998888888776652
Q ss_pred ----------------hhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc
Q 046547 71 ----------------SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV 134 (343)
Q Consensus 71 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~ 134 (343)
..+++.|+.+.+.++++.+. .+|..+||++|. +|++.|++++|+++|++|.+.|+.||
T Consensus 251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~-~y~~~g~~~eA~~lf~~M~~~g~~pd 324 (697)
T PLN03081 251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLA-GYALHGYSEEALCLYYEMRDSGVSID 324 (697)
T ss_pred HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHH-HHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence 23334444444444444432 246777777775 66677777777777777777777777
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
..||++++.+|++.+ .+++|.+++..|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+||+||.
T Consensus 325 ~~t~~~ll~a~~~~g-~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~ 399 (697)
T PLN03081 325 QFTFSIMIRIFSRLA-LLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIA 399 (697)
T ss_pred HHHHHHHHHHHHhcc-chHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHH
Confidence 777777777777765 4777777777777777777777777777777777777777777777753 67777777777
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHhcccH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQGYEVVVEGCLECREY 293 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~ 293 (343)
+|++.|+.++|+++|++|.+ .|+.||..||+++|.+|++.|.+++|.++|+.|.+ .|+.|+..+|+.++++|++.|++
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~ 478 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLL 478 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCH
Confidence 77777777777777777776 37777777777777777777777777777777764 47777777777777777777777
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 294 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++|.+++++| ++.|+..+|++|+.+|...|+++.|.++++++.++.
T Consensus 479 ~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~ 524 (697)
T PLN03081 479 DEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524 (697)
T ss_pred HHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC
Confidence 7777776654 566777777777777777777777777777766543
No 4
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-47 Score=361.54 Aligned_cols=311 Identities=12% Similarity=0.073 Sum_probs=225.4
Q ss_pred hhhhhhccc-cCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCC
Q 046547 17 PCLLQFSSL-RSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPR 95 (343)
Q Consensus 17 ~~~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (343)
.++..+... +..|+..+|+.++.+|++.++++.+.+++..|...|+.|++.+|+.++..+.+.+.++++.+.+.++.
T Consensus 108 ~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-- 185 (697)
T PLN03081 108 ELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-- 185 (697)
T ss_pred HHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC--
Confidence 334444432 24578999999999999999999999999999999999999988544444444444444444444432
Q ss_pred CCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHH-----------------------------------HH
Q 046547 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR-----------------------------------LL 140 (343)
Q Consensus 96 ~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------------------------~~ 140 (343)
.||..+||++|. ++++.|++++|+++|++|.+.|+.||..|| |+
T Consensus 186 ~~~~~t~n~li~-~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 186 ERNLASWGTIIG-GLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CCCeeeHHHHHH-HHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 368999999997 788889999999999999887776665544 55
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC
Q 046547 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220 (343)
Q Consensus 141 li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 220 (343)
||.+|++.| ++++|.++|++|. ++|..+||.+|.+|++.|++++|.++|++|.+.|+.||..||++++.+|++.|
T Consensus 265 Li~~y~k~g-~~~~A~~vf~~m~----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g 339 (697)
T PLN03081 265 LIDMYSKCG-DIEDARCVFDGMP----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA 339 (697)
T ss_pred HHHHHHHCC-CHHHHHHHHHhCC----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcc
Confidence 556666654 4666777776664 34667777777777777777777777777777777777777777777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 300 (343)
++++|.+++..|.+ .|+.||..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|
T Consensus 340 ~~~~a~~i~~~m~~-~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf 414 (697)
T PLN03081 340 LLEHAKQAHAGLIR-TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMF 414 (697)
T ss_pred chHHHHHHHHHHHH-hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777777776 37777777777777777777777777777776643 56667777777777777777777777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
++|.+.|+.||..||+.++.+|++.|+.++|.++|+.|.+
T Consensus 415 ~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred HHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 7777777777777777777777777777777777777754
No 5
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.5e-46 Score=360.15 Aligned_cols=297 Identities=12% Similarity=0.091 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH--------------------------------------hh
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF--------------------------------------LS 71 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--------------------------------------~~ 71 (343)
+..+||.+|.+|++.|++++|+++|++|...|+.||..|| +.
T Consensus 252 d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~ 331 (857)
T PLN03077 252 DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQ 331 (857)
T ss_pred CcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHH
Confidence 4445556666666666566666665555555555555544 22
Q ss_pred hhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCc
Q 046547 72 NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 151 (343)
.+++.|+.+.+.++++.+. .||..+||++|. +|++.|++++|+++|++|.+.|+.||..||+.++.++++.+ +
T Consensus 332 ~y~k~g~~~~A~~vf~~m~-----~~d~~s~n~li~-~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g-~ 404 (857)
T PLN03077 332 MYLSLGSWGEAEKVFSRME-----TKDAVSWTAMIS-GYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLG-D 404 (857)
T ss_pred HHHhcCCHHHHHHHHhhCC-----CCCeeeHHHHHH-HHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccc-h
Confidence 2333444444444444432 356777777776 66777777788888888877777788888888777777665 5
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 231 (343)
+++|.++++.|.+.|+.|+..+||.||.+|++.|++++|.++|++|.+ +|..+||++|.+|++.|+.++|+.+|++
T Consensus 405 ~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~ 480 (857)
T PLN03077 405 LDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQ 480 (857)
T ss_pred HHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHH
Confidence 777777777777777777777777777777777777777777777654 3444555555555555555555555555
Q ss_pred HHhcCCC-----------------------------------------------------------------CCchhHHH
Q 046547 232 MVLNMGL-----------------------------------------------------------------MPRQGMVI 246 (343)
Q Consensus 232 m~~~~~~-----------------------------------------------------------------~p~~~~~~ 246 (343)
|.. ++ .||..+||
T Consensus 481 m~~--~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n 558 (857)
T PLN03077 481 MLL--TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWN 558 (857)
T ss_pred HHh--CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHH
Confidence 542 33 34556678
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh-HCCCCCCHHHHHHHHHHHhcc
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT-ERGFIPYIKVRQKVVEGLAGV 325 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~-~~g~~p~~~~~~~li~~~~~~ 325 (343)
+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. +.|+.|+..+|+.++++|++.
T Consensus 559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~ 638 (857)
T PLN03077 559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRA 638 (857)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhC
Confidence 8888888899999999999999999999999999999999999999999999999998 679999999999999999999
Q ss_pred CChhHHHHHHHHHH
Q 046547 326 GEWKLATVVRQRFA 339 (343)
Q Consensus 326 g~~~~a~~~~~~m~ 339 (343)
|++++|.+++++|.
T Consensus 639 G~~~eA~~~~~~m~ 652 (857)
T PLN03077 639 GKLTEAYNFINKMP 652 (857)
T ss_pred CCHHHHHHHHHHCC
Confidence 99999999999883
No 6
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=1.7e-46 Score=363.07 Aligned_cols=309 Identities=15% Similarity=0.091 Sum_probs=181.3
Q ss_pred hhhhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhh---cccchHHHHHHHHhcC
Q 046547 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQ---NHRIKVIDEMLESFIP 91 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 91 (343)
...++..++ .|+..+|+.+|.+|++.|++++|+++|++|...|+.||..||..++.. .+......++...+.+
T Consensus 140 A~~~f~~m~----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~ 215 (857)
T PLN03077 140 AWYVFGKMP----ERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVR 215 (857)
T ss_pred HHHHHhcCC----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHH
Confidence 344444444 367788999999999999999999999999999999998888433332 2222222222222221
Q ss_pred CCCCC-------------------------------CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHH
Q 046547 92 LRPRS-------------------------------RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140 (343)
Q Consensus 92 ~~~~~-------------------------------p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 140 (343)
.+.. ||..+||++|. +|++.|++++|+++|++|.+.|+.||..||+.
T Consensus 216 -~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~-~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ 293 (857)
T PLN03077 216 -FGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS-GYFENGECLEGLELFFTMRELSVDPDLMTITS 293 (857)
T ss_pred -cCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHH-HHHhCCCHHHHHHHHHHHHHcCCCCChhHHHH
Confidence 1233 35555555554 45555555555555555555555555555555
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC
Q 046547 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220 (343)
Q Consensus 141 li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 220 (343)
+|.++++.+ +.+.+.+++..|.+.|+.||..+||.||.+|++.|++++|.++|++|.. ||..+||++|.+|++.|
T Consensus 294 ll~a~~~~g-~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~~~g 368 (857)
T PLN03077 294 VISACELLG-DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYEKNG 368 (857)
T ss_pred HHHHHHhcC-ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHHhCC
Confidence 555555543 3555555555555555555555555555555555555555555555542 45555555555555555
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 300 (343)
++++|+++|++|.+ .|+.||..||+.++.+|++.|++++|.++++.|.+.|+.|+..+|+.||.+|++.|++++|.++|
T Consensus 369 ~~~~A~~lf~~M~~-~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf 447 (857)
T PLN03077 369 LPDKALETYALMEQ-DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVF 447 (857)
T ss_pred CHHHHHHHHHHHHH-hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 55555555555554 25555555555555555555555555555555555555555555555555555555555555555
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
++|.+ ||..+|+.+|.+|++.|+.++|.++|++|.
T Consensus 448 ~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~ 482 (857)
T PLN03077 448 HNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQML 482 (857)
T ss_pred HhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 55542 344555555555555555555555555554
No 7
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.86 E-value=2e-18 Score=153.73 Aligned_cols=289 Identities=11% Similarity=0.029 Sum_probs=228.1
Q ss_pred HHhCccCcchHHHHHHHchhcCCCCChH-HH---hhhhhhcccchHHHHHHHHhcCCCCCCCC---hhhHHHHHHHHhhc
Q 046547 40 AAVDAKDYQQIPELLGSFEEACQNPNPF-SF---LSNFPQNHRIKVIDEMLESFIPLRPRSRP---KIAYDYLLSYTLQS 112 (343)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~~li~~~~~~ 112 (343)
.+...|+++.|.+.|+++.+. .|+.. ++ ...+...|+.+.+.+.++.+... +..++ ...+..+.. .+..
T Consensus 44 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~-~~~~~~~~~~~~~~La~-~~~~ 119 (389)
T PRK11788 44 NFLLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSR-PDLTREQRLLALQELGQ-DYLK 119 (389)
T ss_pred HHHhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcC-CCCCHHHHHHHHHHHHH-HHHH
Confidence 456778999999999999875 34433 33 44556777777777777776552 22111 245666665 6778
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH----hhHHHHHHHHHccCcHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC----GTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~ 188 (343)
.|+++.|..+|+++.+.. +++..+++.+...+++.+ ++++|.+.++.+.+.+..++. ..+..+...+.+.|+++
T Consensus 120 ~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~ 197 (389)
T PRK11788 120 AGLLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEK-DWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLD 197 (389)
T ss_pred CCCHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHH
Confidence 899999999999998753 346678888888888876 699999999999876543322 24566777888999999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+|.+.|+++.+.. +.+...+..+...+.+.|++++|.++++++... +......+++.++.+|.+.|++++|...++++
T Consensus 198 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 198 AARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999998754 234667888889999999999999999999863 32223467899999999999999999999999
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc---cCChhHHHHHHHHHHh
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG---VGEWKLATVVRQRFAE 340 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~ 340 (343)
.+. .|+...+..+...+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..++++|.+
T Consensus 276 ~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~ 346 (389)
T PRK11788 276 LEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVG 346 (389)
T ss_pred HHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHH
Confidence 885 577777788999999999999999999998876 5899999988888775 5699999999999875
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.84 E-value=2.4e-17 Score=161.75 Aligned_cols=297 Identities=13% Similarity=0.002 Sum_probs=191.0
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
+...|..+...+.+.|++++|.+.|+.+.+.. ..+...+ ...+...++.+.+.+.++......|. +...+..+.
T Consensus 600 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 676 (899)
T TIGR02917 600 SPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPD--NTEAQIGLA 676 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--CHHHHHHHH
Confidence 34455555555666666666666665554332 1111111 33344455555555555554433221 344555555
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
. .+...|++++|.++++.+.+.+ +++...+..+...+...+ ++++|.+.++.+...+ |+..++..+...+.+.|+
T Consensus 677 ~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g-~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~ 751 (899)
T TIGR02917 677 Q-LLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQK-DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGN 751 (899)
T ss_pred H-HHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCC
Confidence 4 4555666666666666665543 334445555555555544 5677777777766643 444556666677777777
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
+++|.+.++++.+.. +.+..++..+...|...|++++|..+|+++.+ ..+++..+++.+...+...|+ ++|..+++
T Consensus 752 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~ 827 (899)
T TIGR02917 752 TAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAE 827 (899)
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHH
Confidence 777777777766543 34566777777777777888888888887774 335566777777777777777 67888877
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+..+.. +-+..++..+...+...|++++|.++|+++.+.+.. +..++..+..+|.+.|++++|.+++++|.+
T Consensus 828 ~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 828 KALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred HHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 776632 123445666777788899999999999999887643 888899999999999999999999998863
No 9
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.83 E-value=2.4e-17 Score=146.81 Aligned_cols=260 Identities=11% Similarity=-0.000 Sum_probs=207.2
Q ss_pred hhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc---HHHHHHHHHHHHhccC
Q 046547 74 PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV---PQIRLLLSSAWLERRC 150 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~~~ 150 (343)
...++.+.+.+.++......|. +..++..+.. ++...|++++|..+++.+...+..++ ...+..+...|...|
T Consensus 46 ~~~~~~~~A~~~~~~al~~~p~--~~~~~~~la~-~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g- 121 (389)
T PRK11788 46 LLNEQPDKAIDLFIEMLKVDPE--TVELHLALGN-LFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAG- 121 (389)
T ss_pred HhcCChHHHHHHHHHHHhcCcc--cHHHHHHHHH-HHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCC-
Confidence 3556666677777776654332 4456777775 77888999999999999987643332 245677777777776
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHhcCCChhHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL----ESYSIVIGAMSTARKTNDAV 226 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~ 226 (343)
++++|..+|+++.+.. +++..+++.+...+.+.|++++|.+.++.+.+.+..+.. ..+..+...+...|++++|.
T Consensus 122 ~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 200 (389)
T PRK11788 122 LLDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAAR 200 (389)
T ss_pred CHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHH
Confidence 6999999999998752 456788999999999999999999999999886543322 24566778889999999999
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
..|+++.+. .+.+...+..+...+.+.|++++|.++++++.+.+-.....+++.+..+|...|++++|...++++.+.
T Consensus 201 ~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~ 278 (389)
T PRK11788 201 ALLKKALAA--DPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE 278 (389)
T ss_pred HHHHHHHhH--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999852 234566788889999999999999999999987543223457888999999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 307 GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 307 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.|+...+..+...+.+.|++++|.++++++.+..
T Consensus 279 --~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~ 312 (389)
T PRK11788 279 --YPGADLLLALAQLLEEQEGPEAAQALLREQLRRH 312 (389)
T ss_pred --CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 4676777899999999999999999999887654
No 10
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.82 E-value=1.3e-16 Score=156.59 Aligned_cols=224 Identities=13% Similarity=0.035 Sum_probs=119.1
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
.+...|++++|..+++++.+.. +.+..+|..+...+...+ ++++|...++.+.+.. +.+...+..+...+.+.|+++
T Consensus 576 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 652 (899)
T TIGR02917 576 YYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG-DLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYA 652 (899)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence 3444455555555555544322 223444444444444443 4555555555554432 223344555555555555555
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+|..+|+++.+.. +.+..++..+...+...|++++|.++++.+.+ ..+++...+..+...+.+.|++++|.+.|+.+
T Consensus 653 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 729 (899)
T TIGR02917 653 KAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQK--QHPKAALGFELEGDLYLRQKDYPAAIQAYRKA 729 (899)
T ss_pred HHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5555555554432 22344555555555555555555555555553 22344455555556666666666666666665
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.+.+ |+..++..+...+.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.|+++.+.
T Consensus 730 ~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 799 (899)
T TIGR02917 730 LKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKK 799 (899)
T ss_pred HhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHh
Confidence 5532 333455555556666666666666666655543 334556666666666666666666666666544
No 11
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.73 E-value=4.3e-14 Score=132.82 Aligned_cols=296 Identities=11% Similarity=0.050 Sum_probs=202.4
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-HH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-SF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
+.+..+..+....|+++.|.+.++.+... .|+.. .+ ...+...|+.+.+.+.++....+.|. +...+..+..
T Consensus 77 ~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~--~~~a~~~la~ 152 (656)
T PRK15174 77 DLLRRWVISPLASSQPDAVLQVVNKLLAV--NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSG--NSQIFALHLR 152 (656)
T ss_pred hHHHHHhhhHhhcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC--cHHHHHHHHH
Confidence 34445555566678888888888877654 33322 22 34455666666666666666554442 3445555554
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
++...|++++|...++.+......+ ...+..+ ..+...+ ++++|...++.+.+....++...+..+...+.+.|++
T Consensus 153 -~l~~~g~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g-~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~ 228 (656)
T PRK15174 153 -TLVLMDKELQAISLARTQAQEVPPR-GDMIATC-LSFLNKS-RLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKY 228 (656)
T ss_pred -HHHHCCChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcC-CHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCH
Confidence 6777788888888888776543222 2222222 2345554 6888888888876654334444555566778888888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhH----HHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHH
Q 046547 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND----AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 188 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
++|...+++..+.. +.+...+..+...+...|++++ |...|+...+ --+.+...+..+...+.+.|++++|..
T Consensus 229 ~eA~~~~~~al~~~-p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~ 305 (656)
T PRK15174 229 QEAIQTGESALARG-LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIP 305 (656)
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888887654 3356677778888888888885 7888888874 334456778888888999999999999
Q ss_pred HHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 264 MIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI-KVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 264 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.+++..+. .|+ ...+..+...|.+.|++++|...++++...+ |+. ..+..+..++...|+.++|...|++..+.
T Consensus 306 ~l~~al~l--~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 306 LLQQSLAT--HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 99988874 344 4456667788889999999999998887653 443 33344566788899999999999887765
Q ss_pred c
Q 046547 342 K 342 (343)
Q Consensus 342 ~ 342 (343)
.
T Consensus 382 ~ 382 (656)
T PRK15174 382 R 382 (656)
T ss_pred C
Confidence 4
No 12
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.72 E-value=1.8e-14 Score=120.98 Aligned_cols=298 Identities=12% Similarity=0.099 Sum_probs=226.4
Q ss_pred HHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccc---------------------------h
Q 046547 31 LRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRI---------------------------K 80 (343)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~---------------------------~ 80 (343)
+.+=+.+++. ...|...++.-+++.|...|+..+...- ..+.+-++.. .
T Consensus 116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~ 194 (625)
T KOG4422|consen 116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGA 194 (625)
T ss_pred hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcccccccccccccccc
Confidence 3344444443 3468899999999999988875444322 2222222211 1
Q ss_pred HHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHH
Q 046547 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~ 160 (343)
.++ ++-.. .| ....+|+++|. .+|+-...+.|.+++++-.....+.+..+||.+|.+-.-. ...+++.
T Consensus 195 vAd-L~~E~---~P--KT~et~s~mI~-Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~-----~~K~Lv~ 262 (625)
T KOG4422|consen 195 VAD-LLFET---LP--KTDETVSIMIA-GLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS-----VGKKLVA 262 (625)
T ss_pred HHH-HHHhh---cC--CCchhHHHHHH-HHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh-----ccHHHHH
Confidence 122 11111 12 24579999996 7888889999999999999888899999999999874332 2367899
Q ss_pred HHHhcCCccCHhhHHHHHHHHHccCcHHH----HHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhH-HHHHHHHHHh-
Q 046547 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVE----AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND-AVEMMKEMVL- 234 (343)
Q Consensus 161 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~~~m~~- 234 (343)
+|....+.||..|+|+++.+..+.|+++. |.+++.+|++-|+.|...+|..+|..+++.++..+ |..+..++..
T Consensus 263 EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ 342 (625)
T KOG4422|consen 263 EMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNS 342 (625)
T ss_pred HHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHh
Confidence 99999999999999999999999998765 46788999999999999999999999999998765 5555555542
Q ss_pred ---cCCCCC----chhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCCchh---hHHHHHHHHHhcccHhHHHHHH
Q 046547 235 ---NMGLMP----RQGMVIKVAAALRANREMWKAVEMIEFLERK----GCPIGFQ---GYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 235 ---~~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~---~~~~li~~~~~~g~~~~a~~~~ 300 (343)
| .++| |...|..-+..|.+..+.+.|.++-.-+... -+.|+.. -|..+....|.....+.....|
T Consensus 343 ltGK-~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y 421 (625)
T KOG4422|consen 343 LTGK-TFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWY 421 (625)
T ss_pred hccC-cccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3333 4566778888888999999999887766532 1334422 3566778888999999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+.|.-.-+-|+..+...++++..-.|.++-..++|..++...
T Consensus 422 ~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 422 EDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhh
Confidence 999998888999999999999999999999999999988653
No 13
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.72 E-value=7.2e-14 Score=131.33 Aligned_cols=297 Identities=9% Similarity=-0.007 Sum_probs=226.5
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCC-CChHHH-hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHh
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQN-PNPFSF-LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTL 110 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 110 (343)
-...++..+.+.|++++|..+++......-. |+.... .......|+.+.+.+.++......|..+ ..+..+-. .+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~--~a~~~la~-~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQP--EDVLLVAS-VL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCCh--HHHHHHHH-HH
Confidence 3667888999999999999999988765332 222222 4444567888888888888776656433 34444443 66
Q ss_pred hcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHH
Q 046547 111 QSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 189 (343)
...|++++|...++++.+. .|+ ...+..+...+...+ ++++|...++.+......+ ...+..+ ..+...|++++
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~l~~~g-~~~eA~~~~~~~~~~~P~~-~~a~~~~-~~l~~~g~~~e 195 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRTLVLMD-KELQAISLARTQAQEVPPR-GDMIATC-LSFLNKSRLPE 195 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCC-ChHHHHHHHHHHHHhCCCC-HHHHHHH-HHHHHcCCHHH
Confidence 7889999999999999874 455 455666666666665 6999999999887653322 3333333 34788999999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHH----HHHHH
Q 046547 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK----AVEMI 265 (343)
Q Consensus 190 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~----a~~~~ 265 (343)
|...++.+.+....++...+..+..++...|++++|+..++...+ .-+.+...+..+...+...|++++ |...+
T Consensus 196 A~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~--~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~ 273 (656)
T PRK15174 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALA--RGLDGAALRRSLGLAYYQSGRSREAKLQAAEHW 273 (656)
T ss_pred HHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHH
Confidence 999999987765444555666667889999999999999999985 334567778889999999999986 89999
Q ss_pred HHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 266 EFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 266 ~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++..+. .|+ ...+..+...+...|++++|...+++..... +.+...+..+..+|.+.|++++|...++++.+..
T Consensus 274 ~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~ 348 (656)
T PRK15174 274 RHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK 348 (656)
T ss_pred HHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 998874 454 5578888999999999999999999988764 2246677788899999999999999999987654
No 14
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=3.6e-13 Score=113.32 Aligned_cols=236 Identities=14% Similarity=0.138 Sum_probs=168.1
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhh---cccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQ---NHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
+..+|..+|.++|+.-..+.|.+++++..+.....+..+|+.++.. ...-+++.+|+.. ...||..|+|+++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~K~Lv~EMisq-----km~Pnl~TfNalL 280 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVGKKLVAEMISQ-----KMTPNLFTFNALL 280 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhccHHHHHHHHHh-----hcCCchHhHHHHH
Confidence 5678999999999999999999999999887778888888554432 2224566666665 3467999999999
Q ss_pred HHHhhcCCChHH----HHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHH----hcCCcc----CHhhH
Q 046547 107 SYTLQSLHPLPL----ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMK----SIGYHP----DCGTC 174 (343)
Q Consensus 107 ~~~~~~~~~~~~----a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~----~~g~~~----~~~~~ 174 (343)
+ +.++.|+++. |++++.+|++-|+.|...+|..+|..+++.++..+.+..++.++. .+.++| |...|
T Consensus 281 ~-c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF 359 (625)
T KOG4422|consen 281 S-CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF 359 (625)
T ss_pred H-HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence 7 8889997765 567888999999999999999999998888754344555544443 333444 23345
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCC----CCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAE----CVPD---LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
..-+..|....+.+.|.++-.-.+... +.|+ ..-|..+....|.....+.-..+|+.|.- .-+-|+..+..-
T Consensus 360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP-~~y~p~~~~m~~ 438 (625)
T KOG4422|consen 360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVP-SAYFPHSQTMIH 438 (625)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-ceecCCchhHHH
Confidence 666777777777777777665443211 3333 23456666677777777777777777775 366677777777
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 248 VAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
++++..-.|.++-.-++|.+++..|
T Consensus 439 ~lrA~~v~~~~e~ipRiw~D~~~~g 463 (625)
T KOG4422|consen 439 LLRALDVANRLEVIPRIWKDSKEYG 463 (625)
T ss_pred HHHHHhhcCcchhHHHHHHHHHHhh
Confidence 7777777777777777776666554
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.61 E-value=1.4e-11 Score=116.01 Aligned_cols=232 Identities=11% Similarity=-0.075 Sum_probs=169.7
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
.|+.+- .++...|++++|+..|++..+. .|+ ...|..+...+...+ ++++|...|++..+.. +.+...|..+..
T Consensus 333 a~~~lg-~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~g-~~~eA~~~~~~al~~~-p~~~~~~~~lg~ 407 (615)
T TIGR00990 333 ALNLRG-TFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLELG-DPDKAEEDFDKALKLN-SEDPDIYYHRAQ 407 (615)
T ss_pred HHHHHH-HHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 344443 3555678888888888888764 354 345555555555554 6888998888887653 334677888888
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
.+...|++++|...|++..+.. +.+...+..+..++.+.|++++|+..|+.... ..+.+...|+.+...+...|+++
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~ 484 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFD 484 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHH
Confidence 8889999999999999887754 23466777788888899999999999999874 34445778888899999999999
Q ss_pred HHHHHHHHHHHcCCCCchh------hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 260 KAVEMIEFLERKGCPIGFQ------GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+|.+.|+...+..-..+.. .++.....+...|++++|.+++++..... +.+...+..+...+.+.|++++|.+
T Consensus 485 ~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~ 563 (615)
T TIGR00990 485 EAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALK 563 (615)
T ss_pred HHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHH
Confidence 9999999887642111111 11222223445789999999999887654 2245578889999999999999999
Q ss_pred HHHHHHhh
Q 046547 334 VRQRFAEL 341 (343)
Q Consensus 334 ~~~~m~~~ 341 (343)
.|++..++
T Consensus 564 ~~e~A~~l 571 (615)
T TIGR00990 564 LFERAAEL 571 (615)
T ss_pred HHHHHHHH
Confidence 99988765
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.59 E-value=1.1e-11 Score=116.78 Aligned_cols=298 Identities=13% Similarity=-0.017 Sum_probs=215.5
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHh---hhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFL---SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
.+...-..+.+.|+++.|++.|++.... .|+...|. ..+...++.+.+.+..+....+.|. +...|..+-. +
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~--~~~a~~~~a~-a 203 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD--YSKALNRRAN-A 203 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC--CHHHHHHHHH-H
Confidence 3456677788899999999999987653 57766653 3344556666666666665554442 3445555554 6
Q ss_pred hhcCCChHHHHHHHHHHHhcC----------------------------CCcc----HHHHHHHH---------------
Q 046547 110 LQSLHPLPLALAILQRTLRSG----------------------------CVPV----PQIRLLLS--------------- 142 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~----------------------------~~p~----~~~~~~li--------------- 142 (343)
+...|++++|+.-|......+ ..|. ........
T Consensus 204 ~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 283 (615)
T TIGR00990 204 YDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDS 283 (615)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcc
Confidence 777899999987665432211 0010 00000000
Q ss_pred ------------H-HH----HhccCchhHHHHHHHHHHhcC-Ccc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC
Q 046547 143 ------------S-AW----LERRCQSQSVADILLEMKSIG-YHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203 (343)
Q Consensus 143 ------------~-~~----~~~~~~~~~a~~~~~~m~~~g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 203 (343)
. ++ .+..+.+++|.+.|+...+.+ ..| ....|+.+...+...|++++|...|++..+..
T Consensus 284 ~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-- 361 (615)
T TIGR00990 284 NELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-- 361 (615)
T ss_pred cccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 0 00 011135778889999888765 233 44567888888889999999999999988753
Q ss_pred CC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHH
Q 046547 204 PD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYE 281 (343)
Q Consensus 204 ~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~ 281 (343)
|+ ...|..+...+...|++++|...|+...+ --+.+..+|..+...+...|++++|...|++..+. .| +...+.
T Consensus 362 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~ 437 (615)
T TIGR00990 362 PRVTQSYIKRASMNLELGDPDKAEEDFDKALK--LNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHI 437 (615)
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHH
Confidence 44 56788888999999999999999999985 23445778999999999999999999999998874 45 455677
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.+...+.+.|++++|+..|++..+.. +-+...+..+...+...|++++|++.|++..++.
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 497 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELE 497 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 77888999999999999999988653 3357888999999999999999999999987764
No 17
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.56 E-value=1.1e-12 Score=115.21 Aligned_cols=294 Identities=11% Similarity=0.034 Sum_probs=152.9
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCC-hHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPN-PFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
-.++|..+...+-..|++++|+..++.+.+. +|+ +..| ...+...|+.+.+-..+....++.| +.....+-
T Consensus 115 ~ae~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP---~l~ca~s~ 189 (966)
T KOG4626|consen 115 GAEAYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNP---DLYCARSD 189 (966)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCc---chhhhhcc
Confidence 4567888999999999999999999988764 342 2334 3444555565555555555544433 43333333
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHc
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-CGTCNYLVSSLCA 183 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~ 183 (343)
+...+...|++++|...+.+..+. .|.-.. |+-|- +.....|+...|+..|++..+. .|+ ...|-.|-..|..
T Consensus 190 lgnLlka~Grl~ea~~cYlkAi~~--qp~fAiawsnLg-~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke 264 (966)
T KOG4626|consen 190 LGNLLKAEGRLEEAKACYLKAIET--QPCFAIAWSNLG-CVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKE 264 (966)
T ss_pred hhHHHHhhcccchhHHHHHHHHhh--CCceeeeehhcc-hHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHH
Confidence 333444556666666666655542 232222 22222 2222223344555555554432 222 2334444444444
Q ss_pred ----------------------------------cCcHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHH
Q 046547 184 ----------------------------------IDQLVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEM 228 (343)
Q Consensus 184 ----------------------------------~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~ 228 (343)
.|++|.|+..+++..+. .|+ ...|+.|.+++-..|++.+|.+.
T Consensus 265 ~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~c 342 (966)
T KOG4626|consen 265 ARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDC 342 (966)
T ss_pred HhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHH
Confidence 45555555555544432 222 34555555555555555555555
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF-QGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 229 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+.+... -.+-.....+.|-..|...|.+++|..+|....+ +.|.. ..++.|-..|-+.|++++|+.-+++...
T Consensus 343 YnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr-- 416 (966)
T KOG4626|consen 343 YNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR-- 416 (966)
T ss_pred HHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--
Confidence 555553 2222333455555555555555555555555444 33432 2455555555556666666665555543
Q ss_pred CCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 308 FIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 308 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+.|+ ...|+.+...|-..|+.+.|.+.+.+....
T Consensus 417 I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~ 451 (966)
T KOG4626|consen 417 IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI 451 (966)
T ss_pred cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc
Confidence 3443 344555555666666666666655554443
No 18
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.54 E-value=1.9e-11 Score=107.62 Aligned_cols=298 Identities=12% Similarity=0.067 Sum_probs=217.9
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
..+.|..+..++...|+.+.|.+.|.+.... .|+.... -.++...|+...+..-....++..|. =.+.|+.|
T Consensus 149 fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~--fAiawsnL 224 (966)
T KOG4626|consen 149 FIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC--FAIAWSNL 224 (966)
T ss_pred hhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc--eeeeehhc
Confidence 5678899999999999999999998876543 5554433 34555566665555555544433221 12445444
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcC--------------------------------CCccH-HHHHHHHHHHHhccCch
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSG--------------------------------CVPVP-QIRLLLSSAWLERRCQS 152 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~--------------------------------~~p~~-~~~~~li~~~~~~~~~~ 152 (343)
-. .+...|+...|++-|++..+.. ..|+. ..|.-+-..|..+ |+.
T Consensus 225 g~-~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeq-G~l 302 (966)
T KOG4626|consen 225 GC-VFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQ-GLL 302 (966)
T ss_pred ch-HHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEecc-ccH
Confidence 42 4555566666666666655421 11221 1111121122233 456
Q ss_pred hHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 046547 153 QSVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231 (343)
Q Consensus 153 ~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 231 (343)
+.|+..+++..+. .|+ ...|+.|-.++-..|++.+|...+.+..... +--....+.|-+.|...|.+++|.++|..
T Consensus 303 dlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~ 379 (966)
T KOG4626|consen 303 DLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLK 379 (966)
T ss_pred HHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 7777777777663 444 5789999999999999999999999988753 22356778899999999999999999999
Q ss_pred HHhcCCCCCc-hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 232 MVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 232 m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
..+ +.|. ...+|.|...|-.+|++++|...+++... +.|+.. .|+.+-..|-..|+.+.|.+.+.+.+.. .
T Consensus 380 al~---v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~--n 452 (966)
T KOG4626|consen 380 ALE---VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQI--N 452 (966)
T ss_pred HHh---hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhc--C
Confidence 874 3444 46689999999999999999999999887 888754 8888999999999999999999988764 4
Q ss_pred CC-HHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 310 PY-IKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 310 p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
|. ...++.|...|-.+|+..+|+.-|+...++|+
T Consensus 453 Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkP 487 (966)
T KOG4626|consen 453 PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKP 487 (966)
T ss_pred cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCC
Confidence 54 56788999999999999999999999998875
No 19
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.54 E-value=5.6e-14 Score=119.17 Aligned_cols=260 Identities=13% Similarity=-0.001 Sum_probs=113.6
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCCC-CCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRPR-SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER 148 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~ 148 (343)
..++...++.+.+-++++... ... +|+...|..++.......++++.|.+.++++...+.. +...+..++.. ...
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~--~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAA--QKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence 455556666555555553322 222 3444455444433566778999999999999876533 45556666654 455
Q ss_pred cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHhcCCChhHHHH
Q 046547 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTNDAVE 227 (343)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~ 227 (343)
+ ++++|.++++...+. .++...+..++..+.+.++++++.++++...... .+.+...|..+...+.+.|+.++|++
T Consensus 91 ~-~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~ 167 (280)
T PF13429_consen 91 G-DPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALR 167 (280)
T ss_dssp ------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHH
T ss_pred c-ccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 4 689999998877654 3566778889999999999999999999987543 45677888889999999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 228 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.+++..+. .+-|....+.++..+...|+.+++.++++...+.. +.|...+..+..+|...|+.++|+.+|++.....
T Consensus 168 ~~~~al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~ 244 (280)
T PF13429_consen 168 DYRKALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN 244 (280)
T ss_dssp HHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccc
Confidence 99999853 33357788999999999999999999999887754 4566677889999999999999999999988754
Q ss_pred CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 308 FIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 308 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+.|+.+...+..++...|+.++|.++..+.-+
T Consensus 245 -p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 245 -PDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp -TT-HHHHHHHHHHHT-----------------
T ss_pred -cccccccccccccccccccccccccccccccc
Confidence 34788889999999999999999999877543
No 20
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3e-14 Score=86.48 Aligned_cols=48 Identities=10% Similarity=0.223 Sum_probs=20.7
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 287 (343)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||++||++|
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~ 48 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGL 48 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444444443
No 21
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.53 E-value=1.5e-13 Score=116.63 Aligned_cols=257 Identities=12% Similarity=0.031 Sum_probs=110.4
Q ss_pred HHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhh----hhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 36 ETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLS----NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
.+...+.+.|++++|+++++......-.|+...|.. +....++.+.+.++.+.+....+. +...+..++. + .
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~--~~~~~~~l~~-l-~ 88 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA--NPQDYERLIQ-L-L 88 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccccccccc-c-c
Confidence 567788899999999999976443332344444432 333566677777777777655443 4556777775 4 5
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC-CccCHhhHHHHHHHHHccCcHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG-YHPDCGTCNYLVSSLCAIDQLVEA 190 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a 190 (343)
..+++++|.+++.+..+.. +++..+...+..+... ++++++.++++...... .+.+...|..+...+.+.|+.++|
T Consensus 89 ~~~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A 165 (280)
T PF13429_consen 89 QDGDPEEALKLAEKAYERD--GDPRYLLSALQLYYRL-GDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKA 165 (280)
T ss_dssp -------------------------------H-HHHT-T-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHH
T ss_pred ccccccccccccccccccc--cccchhhHHHHHHHHH-hHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHH
Confidence 6789999999998876544 5666677777776555 57999999999976533 356777888888999999999999
Q ss_pred HHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 191 AKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 191 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
.+.+++..+.. | |....+.++..+...|+.+++.+++...... .+.|...+..+..++...|+.++|...+++..
T Consensus 166 ~~~~~~al~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~--~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~ 241 (280)
T PF13429_consen 166 LRDYRKALELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKA--APDDPDLWDALAAAYLQLGRYEEALEYLEKAL 241 (280)
T ss_dssp HHHHHHHHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH---HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHH--CcCHHHHHHHHHHHhccccccccccccccccc
Confidence 99999998754 5 4777889999999999999999999998863 36677788999999999999999999999988
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
+.. +.|......+..++...|+.++|.++..+..
T Consensus 242 ~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 242 KLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHS-TT-HHHHHHHHHHHT----------------
T ss_pred ccc-ccccccccccccccccccccccccccccccc
Confidence 742 2367777888999999999999999887754
No 22
>PF13041 PPR_2: PPR repeat family
Probab=99.53 E-value=3e-14 Score=86.52 Aligned_cols=49 Identities=35% Similarity=0.548 Sum_probs=27.1
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHh
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 217 (343)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4555555555555555555555555555555555555555555555554
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.52 E-value=1.1e-10 Score=112.10 Aligned_cols=303 Identities=12% Similarity=0.035 Sum_probs=172.8
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCCh-HHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP-FSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 104 (343)
.+...+..+...+.+.|++++|.++|++.... .|+. ..+ ...+...++...+...++......|.. .. +..
T Consensus 47 ~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~--~~-~~~ 121 (765)
T PRK10049 47 LPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDK--AN-LLA 121 (765)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HH-HHH
Confidence 34455777777888888888888888876654 2332 222 344556677777777777766554432 23 444
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhH-----------------------------
Q 046547 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQS----------------------------- 154 (343)
Q Consensus 105 li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~----------------------------- 154 (343)
+- .++...|+.++|+..++++.+.. |+... +..+...+.. ++..++
T Consensus 122 la-~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~-~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~ 197 (765)
T PRK10049 122 LA-YVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRN-NRLSAPALGAIDDANLTPAEKRDLEADAAAELVRL 197 (765)
T ss_pred HH-HHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH-CCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 44 35667788888888888887743 44332 2222222222 223332
Q ss_pred -----------------HHHHHHHHHhc-CCccCHh-hHH----HHHHHHHccCcHHHHHHHHHHhhhCCCC-CCHhhHH
Q 046547 155 -----------------VADILLEMKSI-GYHPDCG-TCN----YLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYS 210 (343)
Q Consensus 155 -----------------a~~~~~~m~~~-g~~~~~~-~~~----~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~ 210 (343)
|++.++.+.+. ...|+.. .+. ..+..+...|++++|...|+.+.+.+.. |+. .-.
T Consensus 198 ~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~ 276 (765)
T PRK10049 198 SFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQR 276 (765)
T ss_pred hcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHH
Confidence 33333333322 1122211 111 1123345667788888888887776532 322 112
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHhCccHHHHHHHHHHHHHcC-----------CCCch
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMP--RQGMVIKVAAALRANREMWKAVEMIEFLERKG-----------CPIGF 277 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~ 277 (343)
.+..+|...|++++|+..|+++.......+ .......+..++...|++++|.++++.+.+.. -.|+.
T Consensus 277 ~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~ 356 (765)
T PRK10049 277 WVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPND 356 (765)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCc
Confidence 245677778888888888887764211110 12345556667777788888888877776531 11221
Q ss_pred ---hhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 278 ---QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 278 ---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..+..+...+...|+.++|++.++++.... +-+...+..+...+...|+.++|++.+++..++.
T Consensus 357 ~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 357 DWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 133445556777777777777777776542 2345666666667777777777777777766654
No 24
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=2.2e-10 Score=115.06 Aligned_cols=297 Identities=11% Similarity=-0.011 Sum_probs=199.0
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCCCCChH---HHhh-hhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHh
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQNPNPF---SFLS-NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTL 110 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~ 110 (343)
......+.+.|++++|.+.|+.+.... .|+.. .|.. .....++...+.+.++.+....|. +...+..+-. .+
T Consensus 116 l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~--~~~~~~~LA~-ll 191 (1157)
T PRK11447 116 LQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPG--NTGLRNTLAL-LL 191 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCC--CHHHHHHHHH-HH
Confidence 344556888999999999999987543 33322 1222 222346677777777777655443 2334444444 56
Q ss_pred hcCCChHHHHHHHHHHHhcCC------------------C--------------ccHHHHH-------------------
Q 046547 111 QSLHPLPLALAILQRTLRSGC------------------V--------------PVPQIRL------------------- 139 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~------------------~--------------p~~~~~~------------------- 139 (343)
...|+.++|++.++++.+... . |+.....
T Consensus 192 ~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~ 271 (1157)
T PRK11447 192 FSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFR 271 (1157)
T ss_pred HccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchH
Confidence 678999999999998754321 0 1100000
Q ss_pred --HHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHH------
Q 046547 140 --LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP-DLESYS------ 210 (343)
Q Consensus 140 --~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~------ 210 (343)
..-..+... +++++|...|++..+.. +.+...+..+...+.+.|++++|...|++..+..... ....+.
T Consensus 272 ~~~~G~~~~~~-g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 272 ARAQGLAAVDS-GQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHHHC-CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 001123343 46889999999887752 3367788889999999999999999999988654221 111111
Q ss_pred ------HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHH-
Q 046547 211 ------IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEV- 282 (343)
Q Consensus 211 ------~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~- 282 (343)
..-..+.+.|++++|+..|++... --+.+...+..+...+...|++++|.+.|++..+. .|+ ...+..
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~--~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~--~p~~~~a~~~L 425 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQ--VDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRM--DPGNTNAVRGL 425 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 223456788999999999999985 33445667778888999999999999999988763 233 222222
Q ss_pred -----------------------------------------HHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 046547 283 -----------------------------------------VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321 (343)
Q Consensus 283 -----------------------------------------li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 321 (343)
+...+...|++++|.+.|++..+.. +-+...+..+...
T Consensus 426 ~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~ 504 (1157)
T PRK11447 426 ANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQD 504 (1157)
T ss_pred HHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 2233556788899999998887654 2256677788889
Q ss_pred HhccCChhHHHHHHHHHHhhc
Q 046547 322 LAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 322 ~~~~g~~~~a~~~~~~m~~~~ 342 (343)
|.+.|++++|...++++.+..
T Consensus 505 ~~~~G~~~~A~~~l~~al~~~ 525 (1157)
T PRK11447 505 LRQAGQRSQADALMRRLAQQK 525 (1157)
T ss_pred HHHcCCHHHHHHHHHHHHHcC
Confidence 999999999999999887654
No 25
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.48 E-value=2e-10 Score=115.38 Aligned_cols=152 Identities=11% Similarity=-0.024 Sum_probs=109.5
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
..+...|+.++|..+++. .+.+...+..+...+...|+.++|+..|+...+ .-+.+...+..+...+...|+.
T Consensus 581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~ 653 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDL 653 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCH
Confidence 344555566666655541 234455667778888888999999999998885 3344677788888899999999
Q ss_pred HHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC--CC---CHHHHHHHHHHHhccCChhHHH
Q 046547 259 WKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGF--IP---YIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~a~ 332 (343)
++|.+.++...+. .|+ ..++..+...+...|++++|.++++++....- .| +...+..+...+...|++++|.
T Consensus 654 ~eA~~~l~~ll~~--~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~ 731 (1157)
T PRK11447 654 AAARAQLAKLPAT--ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQAL 731 (1157)
T ss_pred HHHHHHHHHHhcc--CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999977653 343 34555667778889999999999998876532 22 2345666677888899999999
Q ss_pred HHHHHHH
Q 046547 333 VVRQRFA 339 (343)
Q Consensus 333 ~~~~~m~ 339 (343)
+.|++..
T Consensus 732 ~~y~~Al 738 (1157)
T PRK11447 732 ETYKDAM 738 (1157)
T ss_pred HHHHHHH
Confidence 9888764
No 26
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.47 E-value=6.7e-10 Score=106.85 Aligned_cols=305 Identities=11% Similarity=0.020 Sum_probs=206.0
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH--HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF--SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
+......+...+...|++++|++.+++..... ..+.. ....++...++.+.+...++......|..++ .+..+..
T Consensus 82 ~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~--~~~~la~ 158 (765)
T PRK10049 82 NDDYQRGLILTLADAGQYDEALVKAKQLVSGA-PDKANLLALAYVYKRAGRHWDELRAMTQALPRAPQTQQ--YPTEYVQ 158 (765)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH--HHHHHHH
Confidence 45566677788888889999998888877642 11222 1244555667777777777776665554322 2222222
Q ss_pred HHhhcCCChH----------------------------------------------HHHHHHHHHHhc-CCCccHHH-H-
Q 046547 108 YTLQSLHPLP----------------------------------------------LALAILQRTLRS-GCVPVPQI-R- 138 (343)
Q Consensus 108 ~~~~~~~~~~----------------------------------------------~a~~~~~~m~~~-~~~p~~~~-~- 138 (343)
++...+..+ +|+..++.+.+. .-.|+... +
T Consensus 159 -~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~ 237 (765)
T PRK10049 159 -ALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQ 237 (765)
T ss_pred -HHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHH
Confidence 233334433 444555555432 12232211 1
Q ss_pred ---HHHHHHHHhccCchhHHHHHHHHHHhcCCc-cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC---CHhhHHH
Q 046547 139 ---LLLSSAWLERRCQSQSVADILLEMKSIGYH-PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP---DLESYSI 211 (343)
Q Consensus 139 ---~~li~~~~~~~~~~~~a~~~~~~m~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ 211 (343)
...+..+...+ ++++|...|+.+.+.+.+ |+. .-..+...|...|++++|..+|+++.+..... ....+..
T Consensus 238 ~a~~d~l~~Ll~~g-~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~ 315 (765)
T PRK10049 238 RARIDRLGALLARD-RYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELAD 315 (765)
T ss_pred HHHHHHHHHHHHhh-hHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHH
Confidence 11133445554 689999999999887532 332 22225678999999999999999987643211 1345666
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCC----------CCCc---hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMG----------LMPR---QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~----------~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
+..++...|++++|..+++.+..... -.|+ ...+..+...+...|+.++|.++++++.... +-+..
T Consensus 316 L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~ 394 (765)
T PRK10049 316 LFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQG 394 (765)
T ss_pred HHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHH
Confidence 77788999999999999999985310 1123 2345667788899999999999999998742 33456
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
.+..+...+...|++++|++.+++..... |+ ...+......+.+.|++++|..+++++.+..|
T Consensus 395 l~~~lA~l~~~~g~~~~A~~~l~~al~l~--Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~P 458 (765)
T PRK10049 395 LRIDYASVLQARGWPRAAENELKKAEVLE--PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREP 458 (765)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 77888888999999999999999988754 54 66677777789999999999999999987653
No 27
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.46 E-value=3.9e-10 Score=109.40 Aligned_cols=300 Identities=7% Similarity=-0.047 Sum_probs=212.9
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchh-cC-CCCChHH---Hhhhhhhccc-------------------------c
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEE-AC-QNPNPFS---FLSNFPQNHR-------------------------I 79 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~-~~p~~~~---~~~~~~~~~~-------------------------~ 79 (343)
+......+--...+.|+.++|.++++.... .+ ..++... +..++..... .
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 666677777778888999999999998776 22 2232211 1222222222 1
Q ss_pred hHHHHHHHHhcCCCCCCC---ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHH
Q 046547 80 KVIDEMLESFIPLRPRSR---PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA 156 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p---~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~ 156 (343)
.......+.+....+..| +...|..+-. ++.. ++.++|...+.+..... |+......+...+... +++++|.
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~-~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~-Gr~eeAi 529 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAK-CYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQV-EDYATAL 529 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHH-HHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHC-CCHHHHH
Confidence 111222222222233323 3455555553 4544 78899999888887643 7755433333333355 4799999
Q ss_pred HHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 046547 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236 (343)
Q Consensus 157 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 236 (343)
..++.+... .|+...+..+...+.+.|++++|...++...+.. +.+...+..+.......|++++|...+++..+
T Consensus 530 ~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~-- 604 (987)
T PRK09782 530 AAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLN-- 604 (987)
T ss_pred HHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--
Confidence 999987654 4555556667778899999999999999998764 22333344444555567999999999999985
Q ss_pred CCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHH
Q 046547 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315 (343)
Q Consensus 237 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 315 (343)
..|+...|..+..++.+.|+.++|...+++..+. .|+ ...++.+-..+...|++++|+..+++..+.. +-+...+
T Consensus 605 -l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~ 680 (987)
T PRK09782 605 -IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL--EPNNSNYQAALGYALWDSGDIAQSREMLERAHKGL-PDDPALI 680 (987)
T ss_pred -hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 3467888999999999999999999999999884 454 4566777778999999999999999988754 2367788
Q ss_pred HHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 316 QKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 316 ~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
..+..++...|++++|+..+++..++++
T Consensus 681 ~nLA~al~~lGd~~eA~~~l~~Al~l~P 708 (987)
T PRK09782 681 RQLAYVNQRLDDMAATQHYARLVIDDID 708 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 8999999999999999999999987763
No 28
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.45 E-value=4.9e-10 Score=99.60 Aligned_cols=282 Identities=12% Similarity=0.027 Sum_probs=204.7
Q ss_pred ccCcchHHHHHHHchhcCCCCChHHHh--hhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH-HHHhhcCCChHHHH
Q 046547 44 AKDYQQIPELLGSFEEACQNPNPFSFL--SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL-SYTLQSLHPLPLAL 120 (343)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~p~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-~~~~~~~~~~~~a~ 120 (343)
.|+++.|.+.+....+..-.|.....+ ..-...|+.+.+++.++...+. .|+...+..+. ...+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~---~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL---ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 599999998888755543233333222 2225667777777777776543 34543332211 12455679999999
Q ss_pred HHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH-------hhHHHHHHHHHccCcHHHHHH
Q 046547 121 AILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC-------GTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 121 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~ 192 (343)
..++++.+.. | +......+...|.+.+ ++++|.+++..+.+.+..++. .+|..++.......+.+...+
T Consensus 174 ~~l~~~~~~~--P~~~~al~ll~~~~~~~g-dw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~ 250 (398)
T PRK10747 174 HGVDKLLEVA--PRHPEVLRLAEQAYIRTG-AWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKR 250 (398)
T ss_pred HHHHHHHhcC--CCCHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999998865 5 4455667777777775 799999999999988765433 233344444445556677777
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
+++.+-+. .+.+......+..++...|+.++|.+++++...+ +||... .++.+.+..++.+++.+..+...+.
T Consensus 251 ~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~---~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~- 323 (398)
T PRK10747 251 WWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR---QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQ- 323 (398)
T ss_pred HHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCHHH--HHHHhhccCCChHHHHHHHHHHHhh-
Confidence 77776443 3456778888999999999999999999998853 445422 3455556779999999999998874
Q ss_pred CCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 273 CPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 273 ~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.|+ ...+..+-..|.+.|++++|.+.|+...+. .|+..++..+...+.+.|+.++|.+++++-..+
T Consensus 324 -~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 324 -HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred -CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344 445677888899999999999999999875 599999999999999999999999999976543
No 29
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.45 E-value=3.5e-10 Score=101.06 Aligned_cols=292 Identities=13% Similarity=0.040 Sum_probs=198.5
Q ss_pred HHHHHHHHh--CccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCCCChh--hHHHH
Q 046547 34 LEETVRAAV--DAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKI--AYDYL 105 (343)
Q Consensus 34 ~~~li~~~~--~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~l 105 (343)
...+..++. ..|+++.|.+.+....+. .|++..+ .......|+.+.+++.++...+..| +.. .--..
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p---~~~l~~~~~~ 159 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAG---NDNILVEIAR 159 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---cCchHHHHHH
Confidence 334444433 469999999999876554 4554333 3444566888888888877654333 322 22212
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHH---
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL--- 181 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~--- 181 (343)
.. .....|+++.|...++.+.+.. | +......+...+...+ ++++|.+.+..+.+.+..++......-..++
T Consensus 160 a~-l~l~~~~~~~Al~~l~~l~~~~--P~~~~~l~ll~~~~~~~~-d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~ 235 (409)
T TIGR00540 160 TR-ILLAQNELHAARHGVDKLLEMA--PRHKEVLKLAEEAYIRSG-AWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGL 235 (409)
T ss_pred HH-HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 32 4456799999999999999865 5 4456667777777765 7999999999999987544332212222222
Q ss_pred HccCcHHHHHHHHHHhhhCCC---CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhH---HHHHHHHHHhC
Q 046547 182 CAIDQLVEAAKVLKGMSSAEC---VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALRAN 255 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~ 255 (343)
...+..+++.+.+..+.+... +.+...+..+...+...|+.++|.+++++..++ .||... ...........
T Consensus 236 l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~---~pd~~~~~~~~l~~~~~l~~ 312 (409)
T TIGR00540 236 LDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK---LGDDRAISLPLCLPIPRLKP 312 (409)
T ss_pred HHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---CCCcccchhHHHHHhhhcCC
Confidence 222333333344444443321 237788888999999999999999999999863 344331 12222223445
Q ss_pred ccHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQ---GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
++.+.+.+.++...+. .|+.. ...++-..+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.
T Consensus 313 ~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~ 390 (409)
T TIGR00540 313 EDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAA 390 (409)
T ss_pred CChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7888899988887763 45444 445778889999999999999996555556799999999999999999999999
Q ss_pred HHHHHHH
Q 046547 333 VVRQRFA 339 (343)
Q Consensus 333 ~~~~~m~ 339 (343)
++|++-.
T Consensus 391 ~~~~~~l 397 (409)
T TIGR00540 391 AMRQDSL 397 (409)
T ss_pred HHHHHHH
Confidence 9999754
No 30
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.43 E-value=2.8e-09 Score=101.52 Aligned_cols=300 Identities=14% Similarity=0.066 Sum_probs=206.3
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCC--CChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH-
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQN--PNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL- 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li- 106 (343)
.+.+--..+-...+.|+++.|++.|++..+..-. |.+..++.++...|+...+...++... .|+...+..++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~-----~p~n~~~~~lla 107 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ-----SSMNISSRGLAS 107 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc-----cCCCCCHHHHHH
Confidence 3444334445567889999999999998764321 223445666667788888888888765 22333333333
Q ss_pred -HHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc
Q 046547 107 -SYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184 (343)
Q Consensus 107 -~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 184 (343)
...+...|++++|+++|+++.+.. |+ ...+..+...+...+ +.++|++.++.+... .|+...+-.++..+...
T Consensus 108 lA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~-q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~ 182 (822)
T PRK14574 108 AARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAG-RGGVVLKQATELAER--DPTVQNYMTLSYLNRAT 182 (822)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcC-CHHHHHHHHHHhccc--CcchHHHHHHHHHHHhc
Confidence 126777799999999999998855 43 444555556666664 689999999999775 56655664443344445
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH----------------------------------
Q 046547 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK---------------------------------- 230 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~---------------------------------- 230 (343)
++..+|++.++++.+.. +-+...+..+..++.+.|-.+.|.++..
T Consensus 183 ~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~ 261 (822)
T PRK14574 183 DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSET 261 (822)
T ss_pred chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccch
Confidence 66666999999998864 2345556666666666665444444333
Q ss_pred --------------HHHhcCCCCCch-hHH----HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 231 --------------EMVLNMGLMPRQ-GMV----IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 231 --------------~m~~~~~~~p~~-~~~----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
.+....+-.|.. ..| -=.+-++...++..++.+.|+.+...|.+....+-..+.++|...+
T Consensus 262 ~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~ 341 (822)
T PRK14574 262 ERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRR 341 (822)
T ss_pred hhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcC
Confidence 222211222321 111 2235567788999999999999998887655667788999999999
Q ss_pred cHhHHHHHHHHHhHCC-----CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 292 EYILAGKTVMGMTERG-----FIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
++++|+.++.++.... ..++......|.-+|...+++++|..+++++.+
T Consensus 342 ~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~ 395 (822)
T PRK14574 342 LPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSE 395 (822)
T ss_pred CcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 9999999999986643 223455568899999999999999999999986
No 31
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.40 E-value=4.2e-09 Score=100.32 Aligned_cols=301 Identities=13% Similarity=0.033 Sum_probs=180.0
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCCCCC-hHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcC
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQNPN-PFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 113 (343)
..+...+...|+++.|+++++++.+.. |+ +..+..+.......+..+++++.+.++.+..|+...+-.++ ..+...
T Consensus 106 lalA~ly~~~gdyd~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~la-yL~~~~ 182 (822)
T PRK14574 106 ASAARAYRNEKRWDQALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLS-YLNRAT 182 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHH-HHHHhc
Confidence 333556777788888888888777643 22 22222222333333444455555444455555655553333 244344
Q ss_pred CChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhH--------------------------------------
Q 046547 114 HPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQS-------------------------------------- 154 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~-------------------------------------- 154 (343)
++..+|++.++++.+.. |+ ...+..+..++.+.+ -...
T Consensus 183 ~~~~~AL~~~ekll~~~--P~n~e~~~~~~~~l~~~~-~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~ 259 (822)
T PRK14574 183 DRNYDALQASSEAVRLA--PTSEEVLKNHLEILQRNR-IVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRS 259 (822)
T ss_pred chHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-CcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccccccc
Confidence 55556888888887753 43 223333333332222 1111
Q ss_pred ----------HHHHHHHHHh-cCCccCH-hhH----HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc
Q 046547 155 ----------VADILLEMKS-IGYHPDC-GTC----NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218 (343)
Q Consensus 155 ----------a~~~~~~m~~-~g~~~~~-~~~----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 218 (343)
|+.-++.+.. .+-.|.. ..| --.+-++...|++.++.+.|+.+...|.+....+--++.++|..
T Consensus 260 ~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~ 339 (822)
T PRK14574 260 ETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYID 339 (822)
T ss_pred chhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHh
Confidence 2222222221 1111221 111 12345566778888888888888888766556677788888888
Q ss_pred CCChhHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC-----------CCch--h-hH
Q 046547 219 ARKTNDAVEMMKEMVLNMG----LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC-----------PIGF--Q-GY 280 (343)
Q Consensus 219 ~~~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p~~--~-~~ 280 (343)
.+++++|+.+++++....+ ..++......|..+|..++++++|..+++.+.+.-- .||. . .+
T Consensus 340 ~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~ 419 (822)
T PRK14574 340 RRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQ 419 (822)
T ss_pred cCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHH
Confidence 8888888888888865211 233444457788888888888888888888876210 1221 1 23
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..++..+...|+..+|++.++++.... +-|......+-+.+...|...+|.+.++....+.
T Consensus 420 ~l~a~~~~~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 420 TLLVQSLVALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 445666788888888888888886653 3367777777778888888888888886665543
No 32
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.39 E-value=8.1e-10 Score=90.66 Aligned_cols=201 Identities=10% Similarity=0.006 Sum_probs=132.4
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH
Q 046547 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA 215 (343)
Q Consensus 136 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 215 (343)
..+..+...+...+ ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 32 ~~~~~la~~~~~~~-~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 32 KIRVQLALGYLEQG-DLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 34444445555544 5777777777766542 2335566666677777777777777777776543 2344556666777
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
+...|++++|.+.++..............+..+...+...|++++|...+.+..+.. +.+...+..+...+...|++++
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 187 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKD 187 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHH
Confidence 777778888888777776521122234456666777777888888888888776642 1234566677777778888888
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
|...+++..+. .+.+...+..+...+...|+.++|..+.+.+.+.
T Consensus 188 A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 188 ARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 88888877665 2345566667777777788888888887777654
No 33
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.39 E-value=5.1e-12 Score=115.07 Aligned_cols=218 Identities=15% Similarity=0.123 Sum_probs=159.4
Q ss_pred CCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH
Q 046547 92 LRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 92 ~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 171 (343)
..+..|+.+||.++|. -||..|+.+.|- +|.-|.-.....+...|+.++.+....+ +.+.+. .|.+
T Consensus 18 ~~gi~PnRvtyqsLia-rYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~An-d~Enpk-----------ep~a 83 (1088)
T KOG4318|consen 18 ISGILPNRVTYQSLIA-RYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEAN-DAENPK-----------EPLA 83 (1088)
T ss_pred HhcCCCchhhHHHHHH-HHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccc-cccCCC-----------CCch
Confidence 3577889999999995 788889999888 8888887777778888999988765554 455543 7889
Q ss_pred hhHHHHHHHHHccCcHHH---HHHHHHHhh----hCCC-----------------CCCHhhHHHHHHHHhcCCChhHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVE---AAKVLKGMS----SAEC-----------------VPDLESYSIVIGAMSTARKTNDAVE 227 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~---a~~~~~~m~----~~~~-----------------~~~~~~~~~ll~~~~~~~~~~~a~~ 227 (343)
.||+.|+.+|...||+.. +.+.++... ..|+ -||..+ .+.-.+..|-++.+++
T Consensus 84 Dtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n---~illlv~eglwaqllk 160 (1088)
T KOG4318|consen 84 DTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAEN---AILLLVLEGLWAQLLK 160 (1088)
T ss_pred hHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHH---HHHHHHHHHHHHHHHH
Confidence 999999999999999764 222222221 1221 222221 1111112222222222
Q ss_pred ------------------------------HHHHHHhcCCC-CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 228 ------------------------------MMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 228 ------------------------------~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
+..... ... .|+..+|.+++.+-..+|+.+.|..++.+|++.|++.+
T Consensus 161 ll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~ck--sl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 161 LLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCK--SLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred HHhhCCcccccchHHHHHHHhccCCchHHHHHHHHH--HhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 222222 122 58999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHH
Q 046547 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331 (343)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 331 (343)
.+-|..|+-+ .+...-+..++.-|.+.|+.|+..|+.-.+..+.+.|....+
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~t~~~ 290 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQTKYG 290 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchhhhhc
Confidence 9988888877 888889999999999999999999999888888776654443
No 34
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.38 E-value=1.6e-09 Score=96.29 Aligned_cols=257 Identities=9% Similarity=-0.049 Sum_probs=192.7
Q ss_pred HHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH-----hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHH
Q 046547 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF-----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSY 108 (343)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 108 (343)
|.....+..+.|+++.|.+.+.++.+. .|+.... .......|+.+.+...++...+..|. +......+..
T Consensus 121 ~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~--~~~al~ll~~- 195 (398)
T PRK10747 121 YLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPR--HPEVLRLAEQ- 195 (398)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--CHHHHHHHHH-
Confidence 444455558899999999999998764 4554322 34556778888888888887665554 3455666665
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHH-------HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQ-------IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-------~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 181 (343)
.+...|++++|.+++..+.+.+..++.. +|..++...... .+.+...++++.+.+. .+.++.....+...+
T Consensus 196 ~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~-~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l 273 (398)
T PRK10747 196 AYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMAD-QGSEGLKRWWKNQSRK-TRHQVALQVAMAEHL 273 (398)
T ss_pred HHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHH
Confidence 6778899999999999999887654332 223333322222 2345566666666443 355778888899999
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHH
Q 046547 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a 261 (343)
...|+.++|.+++++..+. .|+.. -.++.+....++.+++++..+...+ ..+-|.....++-..+.+.+++++|
T Consensus 274 ~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A 347 (398)
T PRK10747 274 IECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEA 347 (398)
T ss_pred HHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999998874 45543 2245566677999999999999985 4555666788999999999999999
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 262 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.+.|+...+ ..|+..+|..+...+.+.|+.++|.+++++-..
T Consensus 348 ~~~le~al~--~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 348 SLAFRAALK--QRPDAYDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred HHHHHHHHh--cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 999999987 569999999999999999999999999997643
No 35
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=2.4e-09 Score=91.30 Aligned_cols=57 Identities=18% Similarity=0.236 Sum_probs=38.2
Q ss_pred hhhhchhhhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHH
Q 046547 10 RSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFS 68 (343)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~ 68 (343)
+.+...+-.+.+.|+.........++.+-..|.+.|++++|+.-|+...+. .|+..+
T Consensus 255 kaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a 311 (840)
T KOG2003|consen 255 KAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEE--APNFIA 311 (840)
T ss_pred HHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHh--CccHHh
Confidence 344555566667777665556666777667777888888888888766543 566654
No 36
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.29 E-value=9.2e-09 Score=91.98 Aligned_cols=262 Identities=11% Similarity=0.017 Sum_probs=182.7
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-----HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-----SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
.+-.......+.|+++.|.+.+++..+. .|+.. ++..+....++.+.+...++.+.+..|.. ......+..
T Consensus 120 ~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~--~~~l~ll~~ 195 (409)
T TIGR00540 120 NLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRH--KEVLKLAEE 195 (409)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--HHHHHHHHH
Confidence 3445567778889999999999987654 24432 23566667888888888888877655543 345555554
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHH---HhccCchhHHHHHHHHHHhcCC---ccCHhhHHHHHHHH
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAW---LERRCQSQSVADILLEMKSIGY---HPDCGTCNYLVSSL 181 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~---~~~~~~~~~a~~~~~~m~~~g~---~~~~~~~~~ll~~~ 181 (343)
.+...|+++.|.+.+..+.+.++.++......-..++ ...+. .+++.+.+..+.+... +.+...+..+...+
T Consensus 196 -~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~-~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l 273 (409)
T TIGR00540 196 -AYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM-ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHL 273 (409)
T ss_pred -HHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH-HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHH
Confidence 6778899999999999999987543332212112222 22211 2223334444443321 23778888899999
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhh---HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHhCc
Q 046547 182 CAIDQLVEAAKVLKGMSSAECVPDLES---YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAALRANR 256 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~ 256 (343)
...|+.++|.+++++..+.. ||... .....-.....++.+.+.+.++...+. .+-|. ....++-..+.+.|
T Consensus 274 ~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~ 349 (409)
T TIGR00540 274 IDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VDDKPKCCINRALGQLLMKHG 349 (409)
T ss_pred HHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CCCChhHHHHHHHHHHHHHcc
Confidence 99999999999999998864 44332 122222334457788899999887753 23333 56678889999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
++++|.+.|+........|+...+..+...+.+.|+.++|.++|++..
T Consensus 350 ~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 350 EFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred cHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999964444467999999999999999999999999999754
No 37
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.28 E-value=5.9e-09 Score=85.48 Aligned_cols=199 Identities=10% Similarity=-0.019 Sum_probs=155.3
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
..+..+.. .+...|++++|.+.+++..+.. +.+...+..+...+...+ ++++|.+.+++..+.. +.+...+..+..
T Consensus 32 ~~~~~la~-~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~-~~~~~~~~~~~~ 107 (234)
T TIGR02521 32 KIRVQLAL-GYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLG-ELEKAEDSFRRALTLN-PNNGDVLNNYGT 107 (234)
T ss_pred HHHHHHHH-HHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhC-CCCHHHHHHHHH
Confidence 44555554 6667899999999999988754 223455566666666664 7999999999988764 335567788888
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
.+...|++++|.+.+++....... .....+..+...+...|++++|...+++... ..+.+...+..+...+...|++
T Consensus 108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQ--IDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999875322 2345677788889999999999999999885 3334566788899999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
++|...+++..+. .+.+...+..+...+...|+.++|..+++.+..
T Consensus 186 ~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 186 KDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999998876 344556777788888899999999999887754
No 38
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.24 E-value=1.2e-07 Score=79.97 Aligned_cols=282 Identities=14% Similarity=0.044 Sum_probs=205.4
Q ss_pred ccCcchHHHHHHHchhcCCCCChHHH--hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHH
Q 046547 44 AKDYQQIPELLGSFEEACQNPNPFSF--LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALA 121 (343)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~ 121 (343)
.|+|.+|..+...-.+.+-.|-.... ..+-...|+....+..+....+..+ .++...+-+.-. .....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~-~~~l~v~ltrar-lll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAG-DDTLAVELTRAR-LLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCC-CchHHHHHHHHH-HHHhCCCchhHHH
Confidence 58999999999886666544544333 3444456666777777777655322 334444444444 5556799999999
Q ss_pred HHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH-------hhHHHHHHHHHccCcHHHHHHHH
Q 046547 122 ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC-------GTCNYLVSSLCAIDQLVEAAKVL 194 (343)
Q Consensus 122 ~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~ 194 (343)
-++++.+.+-. .+........+|.+.| ++..+..++..|.+.|.-.+. .+|+.++.-....+..+.-...|
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g-~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W 252 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLG-AWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWW 252 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhc-cHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHH
Confidence 99998886633 4455677888888876 699999999999998876654 46777777777777767666677
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH-cCC
Q 046547 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGC 273 (343)
Q Consensus 195 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~ 273 (343)
+..-.. .+.+...-.+++.-+..+|+.++|.++..+...+ +..|+. ...-.+.+.++.+.-.+..+.-.+ .+.
T Consensus 253 ~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~ 326 (400)
T COG3071 253 KNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE 326 (400)
T ss_pred HhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC
Confidence 665432 3344555567788899999999999999998875 766662 223345677777777777776554 344
Q ss_pred CCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 274 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
.| -.+.+|-..|.+.+.+.+|...|+...+ ..|+..+|+.+-+++.+.|+..+|.+++++-.
T Consensus 327 ~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 327 DP--LLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred Ch--hHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 44 6677888889999999999999996665 46899999999999999999999999988754
No 39
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1e-08 Score=87.65 Aligned_cols=272 Identities=11% Similarity=0.056 Sum_probs=194.1
Q ss_pred HHHhCccCcchHHHHHHHchhcCCCCChHHH--hhhhh---hcccchHHHHHHHHhcCCCCCCCChhhHHHHH-----HH
Q 046547 39 RAAVDAKDYQQIPELLGSFEEACQNPNPFSF--LSNFP---QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL-----SY 108 (343)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-----~~ 108 (343)
..+.+.|+++.|+++++-+.....+.....- +..+. .-.+...+..--+....+ .-||..- ..
T Consensus 427 ~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~-------dryn~~a~~nkgn~ 499 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI-------DRYNAAALTNKGNI 499 (840)
T ss_pred HHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc-------cccCHHHhhcCCce
Confidence 4577899999999999988765432222221 11111 111223333333332222 2233221 11
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
++ ..|++++|...|.+.....-.-....||+=+.+ -.. +..++|++.|-.+... +..+..+.--+-+.|-...+..
T Consensus 500 ~f-~ngd~dka~~~ykeal~ndasc~ealfniglt~-e~~-~~ldeald~f~klh~i-l~nn~evl~qianiye~led~a 575 (840)
T KOG2003|consen 500 AF-ANGDLDKAAEFYKEALNNDASCTEALFNIGLTA-EAL-GNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPA 575 (840)
T ss_pred ee-ecCcHHHHHHHHHHHHcCchHHHHHHHHhcccH-HHh-cCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHH
Confidence 23 358999999999999887655555667776653 333 4689999998777542 2335556666777888888999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
.|++++-.... -++.|..+.+-|...|-+.|+-.+|.+.+-+--+ -++-+..|...|...|....-++++...|++.
T Consensus 576 qaie~~~q~~s-lip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~eka 652 (840)
T KOG2003|consen 576 QAIELLMQANS-LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKA 652 (840)
T ss_pred HHHHHHHHhcc-cCCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 99998865543 2555788899999999999999999998766542 56668889999999999999999999999986
Q ss_pred HHcCCCCchhhHHHHHHHH-HhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 269 ERKGCPIGFQGYEVVVEGC-LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
.- +.|+..-|..+|..| .+.|++.+|.++++.... .++-|..+...|++.+...|.
T Consensus 653 al--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr-kfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 653 AL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR-KFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred Hh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH-hCccchHHHHHHHHHhccccc
Confidence 54 789999999988775 568999999999998865 467789999999998888874
No 40
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.22 E-value=1.1e-07 Score=92.63 Aligned_cols=285 Identities=11% Similarity=0.009 Sum_probs=190.2
Q ss_pred cCcchHHHHHHHchhcCCCC-ChHHH---hhhhhhcccchHHHHHHHHhcCCCC-CCCChhhHHHHHHHHhhcCCC---h
Q 046547 45 KDYQQIPELLGSFEEACQNP-NPFSF---LSNFPQNHRIKVIDEMLESFIPLRP-RSRPKIAYDYLLSYTLQSLHP---L 116 (343)
Q Consensus 45 ~~~~~a~~~~~~m~~~~~~p-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~---~ 116 (343)
+...++...++.|-.. .| +.... .......|+.+.+..+++......+ ..++...-.-++. .+.+.+. .
T Consensus 356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~-~~~~~~~~~~~ 432 (987)
T PRK09782 356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLAS-LLESHPYLATP 432 (987)
T ss_pred CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHH-HHHhCCcccch
Confidence 4555555555555443 12 22211 3444567778888888888765322 2223334445554 4544444 2
Q ss_pred HHHHHH----------------------HHHHHh-cCC-Cc--cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC
Q 046547 117 PLALAI----------------------LQRTLR-SGC-VP--VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170 (343)
Q Consensus 117 ~~a~~~----------------------~~~m~~-~~~-~p--~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 170 (343)
.++..+ .+.... .+. ++ +...|..+-..+.. + +.++|...+.+.... .|+
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~-~~~eAi~a~~~Al~~--~Pd 508 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-T-LPGVALYAWLQAEQR--QPD 508 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-C-CcHHHHHHHHHHHHh--CCc
Confidence 222222 222211 112 22 44555555554444 4 577899977777664 466
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
......+...+...|++++|...|+++... .|+...+..+..++...|+.++|...+++.... . +++...+..+..
T Consensus 509 ~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~ 584 (987)
T PRK09782 509 AWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHA 584 (987)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHH
Confidence 444333344456899999999999997654 445555667778889999999999999999863 3 333344444445
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 330 (343)
...+.|++++|...+++..+ ..|+...|..+...+.+.|++++|+..+++..... +-+...+..+...+...|++++
T Consensus 585 ~l~~~Gr~~eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~ee 661 (987)
T PRK09782 585 QRYIPGQPELALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQ 661 (987)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHH
Confidence 55567999999999999987 45777888899999999999999999999988765 3357788888889999999999
Q ss_pred HHHHHHHHHhhcC
Q 046547 331 ATVVRQRFAELKS 343 (343)
Q Consensus 331 a~~~~~~m~~~~~ 343 (343)
|+..+++..++.|
T Consensus 662 Ai~~l~~AL~l~P 674 (987)
T PRK09782 662 SREMLERAHKGLP 674 (987)
T ss_pred HHHHHHHHHHhCC
Confidence 9999999887653
No 41
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=6.9e-09 Score=92.46 Aligned_cols=278 Identities=13% Similarity=0.046 Sum_probs=151.5
Q ss_pred CcchHHHHHHHchhcCCCCChH-HH---hhhhhhcccchHHHHHHHHhcCCCC-CCCChhhHHHHHHHHhhcCCChHHHH
Q 046547 46 DYQQIPELLGSFEEACQNPNPF-SF---LSNFPQNHRIKVIDEMLESFIPLRP-RSRPKIAYDYLLSYTLQSLHPLPLAL 120 (343)
Q Consensus 46 ~~~~a~~~~~~m~~~~~~p~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~~~~~~~a~ 120 (343)
++++|...|..+... .++.. .. -.++........++..++...+..| ...+...|++.+- -+.+ +-++
T Consensus 334 ~~~~A~~~~~klp~h--~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LW-HLq~----~v~L 406 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH--HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLW-HLQD----EVAL 406 (638)
T ss_pred HHHHHHHHHHhhHHh--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHH-HHHh----hHHH
Confidence 345666666663332 22222 21 2233333344455555555554444 2234566777663 2211 2233
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhh
Q 046547 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 121 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 199 (343)
.++.+=.-.--+-.+.+|-++-+.|.-+ ++.+.|++.|++..+. .| ...+|+.+-.-+.....+|+|...|+....
T Consensus 407 s~Laq~Li~~~~~sPesWca~GNcfSLQ-kdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~ 483 (638)
T KOG1126|consen 407 SYLAQDLIDTDPNSPESWCALGNCFSLQ-KDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKALG 483 (638)
T ss_pred HHHHHHHHhhCCCCcHHHHHhcchhhhh-hHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhhhc
Confidence 3333211111223445666666655444 3567777777766653 34 456666666666667777777777765543
Q ss_pred CCCCCCHhhHHH---HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 200 AECVPDLESYSI---VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 200 ~~~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
.|...||+ +-..|.+.++++.|+-.|+...+ --+-+.+....+...+-+.|+.|+|++++++.....-+ |
T Consensus 484 ----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n 556 (638)
T KOG1126|consen 484 ----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-N 556 (638)
T ss_pred ----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-C
Confidence 44445544 34556677777777777777652 22224444555555566677777777777776653221 2
Q ss_pred hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+.+---....+...+++++|+..++++++- .| +..+|-.+...|.+.|+.+.|..-|.-+.+++
T Consensus 557 ~l~~~~~~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 557 PLCKYHRASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred chhHHHHHHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 222222344455667777777777777653 34 45556666777777777777777776666655
No 42
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.22 E-value=3.9e-09 Score=94.02 Aligned_cols=265 Identities=9% Similarity=-0.021 Sum_probs=200.0
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcC--CCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEAC--QNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
=+...+-.+|...+++++|..+|+...... ..-+...|-..+....+.-...-+-+.+....+. ...+|.++=. |
T Consensus 354 wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~--sPesWca~GN-c 430 (638)
T KOG1126|consen 354 WVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPN--SPESWCALGN-C 430 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCC--CcHHHHHhcc-h
Confidence 456778888999999999999999988532 1334556655555554443334444444443443 3578888886 8
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH---HHHHHccC
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL---VSSLCAID 185 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l---l~~~~~~~ 185 (343)
+.-+++.+.|++.|++..+ +.| ...+|+.+-+-+.... .+|+|...|+... ..|+..||+. ...|.+.+
T Consensus 431 fSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~e-e~d~a~~~fr~Al----~~~~rhYnAwYGlG~vy~Kqe 503 (638)
T KOG1126|consen 431 FSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATE-EFDKAMKSFRKAL----GVDPRHYNAWYGLGTVYLKQE 503 (638)
T ss_pred hhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhH-HHHhHHHHHHhhh----cCCchhhHHHHhhhhheeccc
Confidence 9999999999999999988 446 7788888877777765 6899999998764 5567777765 45688999
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
+++.|.-.|++..+.+. -+.+....+...+-+.|+.|+|++++++... --+-|+..---.+..+...++.++|+..+
T Consensus 504 k~e~Ae~~fqkA~~INP-~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~~~~~il~~~~~~~eal~~L 580 (638)
T KOG1126|consen 504 KLEFAEFHFQKAVEINP-SNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKYHRASILFSLGRYVEALQEL 580 (638)
T ss_pred hhhHHHHHHHhhhcCCc-cchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHHHHHHHHHhhcchHHHHHHH
Confidence 99999999999887542 3566677778888999999999999999884 22234444445566677889999999999
Q ss_pred HHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC
Q 046547 266 EFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 266 ~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 311 (343)
+++++ +.|+.. .|-.+...|.+.|+.+.|+.-|..+.+.+-++.
T Consensus 581 EeLk~--~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 581 EELKE--LVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHH--hCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 99988 667654 666777889999999999999998887654443
No 43
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.20 E-value=1.3e-07 Score=79.73 Aligned_cols=267 Identities=12% Similarity=0.024 Sum_probs=200.9
Q ss_pred HHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 31 LRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
.-.|.....+..+.|+.+.+-..+.+.-+..-.++.... ...+...++..-+.+-+..+..+.|. +.........
T Consensus 118 ~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr--~~~vlrLa~r 195 (400)
T COG3071 118 VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPR--HPEVLRLALR 195 (400)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcC--ChHHHHHHHH
Confidence 455777888889999999999999988765334444433 45666677666666666666665554 4567777777
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCVPVP-------QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
++.+.|++.....++..|.+.|+--|. .+|+.++.-....+ ..+.-...|+...++ .+-++..-..++.-
T Consensus 196 -~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~-~~~gL~~~W~~~pr~-lr~~p~l~~~~a~~ 272 (400)
T COG3071 196 -AYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN-GSEGLKTWWKNQPRK-LRNDPELVVAYAER 272 (400)
T ss_pred -HHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc-cchHHHHHHHhccHH-hhcChhHHHHHHHH
Confidence 778889999999999999999976555 45666666533333 233334456655443 45567777788889
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHH
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 260 (343)
+.+.|+.++|.++.++-.+.+..|+.. ..-.+.+.++...-++..++-....+. ++..+.+|=..|.+.+.|.+
T Consensus 273 li~l~~~~~A~~~i~~~Lk~~~D~~L~----~~~~~l~~~d~~~l~k~~e~~l~~h~~--~p~L~~tLG~L~~k~~~w~k 346 (400)
T COG3071 273 LIRLGDHDEAQEIIEDALKRQWDPRLC----RLIPRLRPGDPEPLIKAAEKWLKQHPE--DPLLLSTLGRLALKNKLWGK 346 (400)
T ss_pred HHHcCChHHHHHHHHHHHHhccChhHH----HHHhhcCCCCchHHHHHHHHHHHhCCC--ChhHHHHHHHHHHHhhHHHH
Confidence 999999999999999999988777622 233566778888888888877754444 44778899999999999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 310 (343)
|...|+...+ ..|+..+|+.+-++|.+.|+..+|.+..++..-.-.+|
T Consensus 347 A~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 347 ASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred HHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 9999997776 67999999999999999999999999999866443333
No 44
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.19 E-value=5.2e-08 Score=88.10 Aligned_cols=288 Identities=14% Similarity=0.076 Sum_probs=203.3
Q ss_pred HHHHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh--
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ-- 111 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~-- 111 (343)
...+...|++++|++.++.-.. ..+|..++ ...+...|+.+.++..+..+.... |+...|...+..+..
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~--~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN---Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEK--QILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN---PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhh--hCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCcHHHHHHHHHHHhhh
Confidence 4456778999999999976433 35666665 577788999999999999887653 455555544432441
Q ss_pred ---cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchh-HHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 112 ---SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ-SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 112 ---~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~-~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
...+.+...++++++...- |.......+.-.++. |..+. .+..++..+..+|+++ +|+.|-..|....+.
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~-g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~ 159 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLE-GDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKA 159 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCC-HHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHH
Confidence 1235788889999987654 555554444333333 32343 4556777778888644 567776677766666
Q ss_pred HHHHHHHHHhhhC----C----------CCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc-hhHHHHHHH
Q 046547 188 VEAAKVLKGMSSA----E----------CVPDL--ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAA 250 (343)
Q Consensus 188 ~~a~~~~~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~ 250 (343)
+-..+++...... + -.|+. .++..+...|-..|+.++|+++.+...+. .|+ +..|..-.+
T Consensus 160 ~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---tPt~~ely~~Kar 236 (517)
T PF12569_consen 160 AIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---TPTLVELYMTKAR 236 (517)
T ss_pred HHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc---CCCcHHHHHHHHH
Confidence 6666666665432 1 13443 35566777888999999999999998852 354 677888899
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHH--------HHHHHHHHH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK--------VRQKVVEGL 322 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--------~~~~li~~~ 322 (343)
.+-+.|++.+|.+.++..++.... |...=+-....+.+.|++++|.+++......+..|... -......+|
T Consensus 237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~ 315 (517)
T PF12569_consen 237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY 315 (517)
T ss_pred HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence 999999999999999998875433 66666677888999999999999999988777555221 123455689
Q ss_pred hccCChhHHHHHHHHHHh
Q 046547 323 AGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 323 ~~~g~~~~a~~~~~~m~~ 340 (343)
.+.|++..|.+.|..+.+
T Consensus 316 ~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 316 LRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 999999999998877654
No 45
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=4e-08 Score=91.26 Aligned_cols=214 Identities=11% Similarity=-0.002 Sum_probs=136.7
Q ss_pred ChHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHh--------ccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 115 PLPLALAILQRTLRSGCVPVPQ-IRLLLSSAWLE--------RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~--------~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
++++|...|++..+. .|+.. .|..+-.++.. ..+++++|...+++..+.. +-+...+..+-..+...|
T Consensus 276 ~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g 352 (553)
T PRK12370 276 SLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS 352 (553)
T ss_pred HHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence 467888888888764 35443 33333222221 1123677888888877653 334566777777777888
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHhCccHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEM 264 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~ 264 (343)
++++|...|++..+.+ +.+...+..+...+...|++++|+..+++..+- .|+. ..+..+...+...|++++|...
T Consensus 353 ~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l---~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 353 EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKL---DPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 8888888888887754 223556777778888888888888888888742 3332 2333344456667888888888
Q ss_pred HHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 265 IEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 265 ~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+++..+.. .|+ ...+..+-..+...|+.++|...+.++... .|+ ....+.+...|...| +.|...++.+.+
T Consensus 429 ~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~ 501 (553)
T PRK12370 429 GDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLE 501 (553)
T ss_pred HHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHH
Confidence 88876543 233 334556666777888888888888776543 233 333445555666666 466666666544
No 46
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.18 E-value=3.8e-08 Score=80.63 Aligned_cols=217 Identities=13% Similarity=0.068 Sum_probs=101.2
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH------hhHHHHHHHHHccCcH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC------GTCNYLVSSLCAIDQL 187 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~------~~~~~ll~~~~~~~~~ 187 (343)
.+.++|.+.|-+|.+. .|.+.--+.-+..+.+..|.++.|+++.+.+.+ .||. ...-.|-.-|...|-+
T Consensus 49 ~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~---spdlT~~qr~lAl~qL~~Dym~aGl~ 123 (389)
T COG2956 49 NQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE---SPDLTFEQRLLALQQLGRDYMAAGLL 123 (389)
T ss_pred cCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc---CCCCchHHHHHHHHHHHHHHHHhhhh
Confidence 3455666666665552 122222222223333333455566665555544 2221 1122233344455555
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHhCccHHHHHH
Q 046547 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 188 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~ 263 (343)
|.|..+|..+.+.|. .-....-.|+..|-...+|++|+++-+++.. .+-.+. ...|.-|...+....+.+.|..
T Consensus 124 DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k-~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVK-LGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH-cCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 666666655554332 1223344555555555666666655555543 222221 1223444444444455555555
Q ss_pred HHHHHHHcCCCCchhhHH-HHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 264 MIEFLERKGCPIGFQGYE-VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 264 ~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
++.+..+. .|+..--+ .+-+.+...|+++.|.+.|+...+.+..--..+...|..+|...|+.++...++.++.
T Consensus 202 ~l~kAlqa--~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~ 276 (389)
T COG2956 202 LLKKALQA--DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAM 276 (389)
T ss_pred HHHHHHhh--CccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55555442 12222111 2233355555666666666555555433334455555556666666655555555544
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.9e-08 Score=85.00 Aligned_cols=220 Identities=10% Similarity=-0.040 Sum_probs=171.9
Q ss_pred hhcCCChHHHHHHHHHHHhcCCC--ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCV--PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
.-...|+++|+.+|++.++...- -|..+|.-++ |.+.. ...+.++-+-...--+--+.|+.++-+-|+-.++.
T Consensus 272 ~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~~---~skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eH 346 (559)
T KOG1155|consen 272 SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKND---KSKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEH 346 (559)
T ss_pred HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHhh---hHHHHHHHHHHHHhccCCccceeeehhHHHHHHhH
Confidence 33557888888888888876311 2556676665 23332 12233333222211233457888888899999999
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 188 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
++|...|+...+.+. -....|+.+-.-|....+...|++-++...+ -.+.|-..|-.|-++|.-.+...=|+-.|++
T Consensus 347 EKAv~YFkRALkLNp-~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p~DyRAWYGLGQaYeim~Mh~YaLyYfqk 423 (559)
T KOG1155|consen 347 EKAVMYFKRALKLNP-KYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INPRDYRAWYGLGQAYEIMKMHFYALYYFQK 423 (559)
T ss_pred HHHHHHHHHHHhcCc-chhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCchhHHHHhhhhHHHHHhcchHHHHHHHHH
Confidence 999999999988652 2467788888999999999999999999984 5667889999999999999999999999998
Q ss_pred HHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 268 LERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 268 m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
..+ ++| |...|.+|-+.|.+.++.++|++-|+.....|- .+...+..|.+.|-+.++.++|.+.|++..+
T Consensus 424 A~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-te~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 424 ALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-TEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc-cchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 877 555 677999999999999999999999999988763 3567889999999999999999999988765
No 48
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.16 E-value=1.1e-08 Score=93.78 Aligned_cols=256 Identities=12% Similarity=0.043 Sum_probs=162.5
Q ss_pred hhhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCC
Q 046547 16 RPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPR 95 (343)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (343)
..++..+...+-.|+..||.++|..||..|+.+.|- +|..|.-.....+-..|..........+.. -.+.
T Consensus 10 tnfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~---------Enpk 79 (1088)
T KOG4318|consen 10 TNFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDA---------ENPK 79 (1088)
T ss_pred chHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccc---------cCCC
Confidence 356666777777899999999999999999999998 988887655444444443333332222211 1345
Q ss_pred CCChhhHHHHHHHHhhcCCChHHHHHHHHH-HH-------hcCCCccHHHHHHHHHHHHhccCchhHHHH---------H
Q 046547 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQR-TL-------RSGCVPVPQIRLLLSSAWLERRCQSQSVAD---------I 158 (343)
Q Consensus 96 ~p~~~~~~~li~~~~~~~~~~~~a~~~~~~-m~-------~~~~~p~~~~~~~li~~~~~~~~~~~~a~~---------~ 158 (343)
.|...+|..|+. +|+..||+.. ++..++ |. ..|+..-..-|...+++ ..+ -...+.. +
T Consensus 80 ep~aDtyt~Ll~-ayr~hGDli~-fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c--~p~-~lpda~n~illlv~egl 154 (1088)
T KOG4318|consen 80 EPLADTYTNLLK-AYRIHGDLIL-FEVVEQDLESINQSFSDHGVGSPERWFLMKIHC--CPH-SLPDAENAILLLVLEGL 154 (1088)
T ss_pred CCchhHHHHHHH-HHHhccchHH-HHHHHHHHHHHHhhhhhhccCcHHHHHHhhccc--Ccc-cchhHHHHHHHHHHHHH
Confidence 678899999996 8999998655 222222 22 23332222222222221 111 1111211 1
Q ss_pred HHHHHhcC-CccCHhhHHH---HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 159 LLEMKSIG-YHPDCGTCNY---LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 159 ~~~m~~~g-~~~~~~~~~~---ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
+....+.+ ..|...-++. +++-+.. +.....++....+...-.|++.+|.+++.+-..+|+.+.|..++.+|.+
T Consensus 155 waqllkll~~~Pvsa~~~p~~vfLrqnv~--~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke 232 (1088)
T KOG4318|consen 155 WAQLLKLLAKVPVSAWNAPFQVFLRQNVV--DNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKE 232 (1088)
T ss_pred HHHHHHHHhhCCcccccchHHHHHHHhcc--CCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 11222211 1222221221 2333222 2233344444333322269999999999999999999999999999998
Q ss_pred cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 235 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
+ |++.+..-|-.|+-+ .++..-+..+++-|.+.|+.|+..|+..-+..+.++|.
T Consensus 233 ~-gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyvip~l~N~~ 286 (1088)
T KOG4318|consen 233 K-GFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYVIPQLSNGQ 286 (1088)
T ss_pred c-CCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHHHhhhcchh
Confidence 6 999999888888765 88888999999999999999999999988877777655
No 49
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.14 E-value=1.7e-07 Score=86.56 Aligned_cols=300 Identities=15% Similarity=0.120 Sum_probs=154.9
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCC-CCChH-HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhc
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQ-NPNPF-SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS 112 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 112 (343)
...-..+++ |++++|.+++.+.....- .|-++ |....+...|+.+..-...-..-++.|. |...|-.+-. ....
T Consensus 144 ~eAN~lfar-g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~--d~e~W~~lad-ls~~ 219 (895)
T KOG2076|consen 144 GEANNLFAR-GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK--DYELWKRLAD-LSEQ 219 (895)
T ss_pred HHHHHHHHh-CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC--ChHHHHHHHH-HHHh
Confidence 334444555 999999999998876532 22222 2244555566554444433333344443 3456666665 6667
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh----hHHHHHHHHHccCcHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLV 188 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~ 188 (343)
.|+++.|.-.|.+..+.. |+..-+.-=-..++++.|+...|.+-|.++.+...+.|.. +--.++..+...++-+
T Consensus 220 ~~~i~qA~~cy~rAI~~~--p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e 297 (895)
T KOG2076|consen 220 LGNINQARYCYSRAIQAN--PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE 297 (895)
T ss_pred cccHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence 788888888888887744 4443322222234454556777777777776643222221 2223344555566667
Q ss_pred HHHHHHHHhhhC-CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc--------------------------CCCCCc
Q 046547 189 EAAKVLKGMSSA-ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN--------------------------MGLMPR 241 (343)
Q Consensus 189 ~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------------------------~~~~p~ 241 (343)
.|.+.++..... +-..+...+++++..+.+...++.|......+... .++.++
T Consensus 298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~ 377 (895)
T KOG2076|consen 298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD 377 (895)
T ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence 777776665542 23344556666677777777777776666665531 011112
Q ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC--chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPI--GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
..++ -+.-++.+.+..+....+.....+..+.| +...|--+..+|...|++.+|+++|..+......-+...|-.+.
T Consensus 378 l~v~-rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a 456 (895)
T KOG2076|consen 378 LRVI-RLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA 456 (895)
T ss_pred chhH-hHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence 2220 11122223333333333333333333222 22344444555555555555555555555443333344555555
Q ss_pred HHHhccCChhHHHHHHHHHHhh
Q 046547 320 EGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.+|...|.+++|.+.|+....+
T Consensus 457 ~c~~~l~e~e~A~e~y~kvl~~ 478 (895)
T KOG2076|consen 457 RCYMELGEYEEAIEFYEKVLIL 478 (895)
T ss_pred HHHHHHhhHHHHHHHHHHHHhc
Confidence 5555555555555555555443
No 50
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.08 E-value=1.3e-06 Score=71.88 Aligned_cols=284 Identities=10% Similarity=0.036 Sum_probs=194.2
Q ss_pred ccCcchHHHHHHHchhcCCCCChH----HHhhhhhhcccchHHHHHHHHhcCCCCCCCCh---hhHHHHHHHHhhcCCCh
Q 046547 44 AKDYQQIPELLGSFEEACQNPNPF----SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK---IAYDYLLSYTLQSLHPL 116 (343)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~~~li~~~~~~~~~~ 116 (343)
..+.++|.++|-+|.+. .|..+ |.-+++...|.++.+-.+-+.+.. +|..+.. ...-.|-. =|...|-+
T Consensus 48 s~Q~dKAvdlF~e~l~~--d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~-spdlT~~qr~lAl~qL~~-Dym~aGl~ 123 (389)
T COG2956 48 SNQPDKAVDLFLEMLQE--DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLE-SPDLTFEQRLLALQQLGR-DYMAAGLL 123 (389)
T ss_pred hcCcchHHHHHHHHHhc--CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhc-CCCCchHHHHHHHHHHHH-HHHHhhhh
Confidence 46889999999999863 22222 335777788888888888887765 2322211 11112222 24567999
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH----hhHHHHHHHHHccCcHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC----GTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~----~~~~~ll~~~~~~~~~~~a~~ 192 (343)
|.|..+|..+.+.|.. -......|+..| +..+++++|+++-+++.+.|-.+.. ..|..+-..+....+++.|..
T Consensus 124 DRAE~~f~~L~de~ef-a~~AlqqLl~IY-Q~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~ 201 (389)
T COG2956 124 DRAEDIFNQLVDEGEF-AEGALQQLLNIY-QATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARE 201 (389)
T ss_pred hHHHHHHHHHhcchhh-hHHHHHHHHHHH-HHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 9999999999886532 223445666655 4456899999999999887655542 345666666667889999999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
++.+..+...+ .+..--.+-+.....|+++.|.+.++.+.+. +..--..+-..|..+|...|+.++....+..+.+..
T Consensus 202 ~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 202 LLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 99998876421 2333335567788999999999999999975 555556778899999999999999999999988754
Q ss_pred CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc---CChhHHHHHHHHHH
Q 046547 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV---GEWKLATVVRQRFA 339 (343)
Q Consensus 273 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~ 339 (343)
..++ .-..+-+.-....-.+.|..++.+-..+ +|+...+..||..-... |.+.+..-++..|.
T Consensus 280 ~g~~--~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 280 TGAD--AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred CCcc--HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 3333 3333333333444456666666655544 59999999999865543 44566666666654
No 51
>PRK12370 invasion protein regulator; Provisional
Probab=99.07 E-value=1.7e-07 Score=87.19 Aligned_cols=214 Identities=12% Similarity=-0.026 Sum_probs=145.2
Q ss_pred CCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
.+++++|...+++..+.. | +...+..+-..+...+ ++++|...+++..+.+ +.+...+..+...+...|++++|.
T Consensus 317 ~~~~~~A~~~~~~Al~ld--P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 317 QNAMIKAKEHAIKATELD--HNNPQALGLLGLINTIHS-EYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred chHHHHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 355889999999998854 5 4445555544445554 7999999999998864 334567888888999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
..+++..+.... +...+..++..+...|++++|...+++.... ..| +...+..+..++...|+.++|...+.++..
T Consensus 393 ~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 393 QTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred HHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 999999876432 2223334455567789999999999998752 234 344577788888899999999999988765
Q ss_pred cCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 271 KGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTER-GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 271 ~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
. .|+.. ..+.+...|...| +.|...++++.+. +-.|...-+..+ .|.-.|+-+.+..+ +++.+
T Consensus 470 ~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 470 Q--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred c--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 3 34433 3444555677777 4777777776554 222322222333 34455665555554 55544
No 52
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=3.2e-07 Score=78.80 Aligned_cols=220 Identities=10% Similarity=0.081 Sum_probs=122.1
Q ss_pred HHhCccCcchHHHHHHHchhcCC--CCChHHH-hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCCh
Q 046547 40 AAVDAKDYQQIPELLGSFEEACQ--NPNPFSF-LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPL 116 (343)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 116 (343)
+....+|+++|+.+|+++....- --|..+| +.++.+..+.++ .-+-+....+....| .|+.++-+ +++-.++.
T Consensus 271 ~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL-s~LA~~v~~idKyR~--ETCCiIaN-YYSlr~eH 346 (559)
T KOG1155|consen 271 ASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL-SYLAQNVSNIDKYRP--ETCCIIAN-YYSLRSEH 346 (559)
T ss_pred HHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH-HHHHHHHHHhccCCc--cceeeehh-HHHHHHhH
Confidence 34445677777777777665422 2244455 233333332221 111111112222222 33333333 45555666
Q ss_pred HHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 195 (343)
++|...|++..+.+ |.... |+.+-+-|.... ....|.+-++...+-. +.|-..|--|..+|.-.+.+.-|+-.|+
T Consensus 347 EKAv~YFkRALkLN--p~~~~aWTLmGHEyvEmK-Nt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfq 422 (559)
T KOG1155|consen 347 EKAVMYFKRALKLN--PKYLSAWTLMGHEYVEMK-NTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQ 422 (559)
T ss_pred HHHHHHHHHHHhcC--cchhHHHHHhhHHHHHhc-ccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHH
Confidence 77777777766633 44433 333334555544 3566777776666542 3455666666677766677777777777
Q ss_pred HhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 196 GMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 196 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
+..... +-|...|.+|-.+|.+.++.++|++-|..... .-..+...+..|.+.|-+.++.++|...|+..++
T Consensus 423 kA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~LakLye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 423 KALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVRLAKLYEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 665532 23566777777777777777777777777664 2223456677777777777777777766665543
No 53
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.05 E-value=2e-07 Score=83.59 Aligned_cols=240 Identities=14% Similarity=0.098 Sum_probs=170.1
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhc-----C-CCccHHHHHH-HHHHHHhccCchhHHHHHHHHHHhc-----C-C
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRS-----G-CVPVPQIRLL-LSSAWLERRCQSQSVADILLEMKSI-----G-Y 167 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~~~~~~~-li~~~~~~~~~~~~a~~~~~~m~~~-----g-~ 167 (343)
+...+- ..|...|+++.|..++....+. | ..|...+..- +-..|...+ .+++|..+|+++... | .
T Consensus 201 ~~~~La-~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~-k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 201 TLRNLA-EMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLG-KYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHH-HHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHhcCCC
Confidence 343344 4788889999999999987653 2 1344444322 334455554 688999998888532 2 1
Q ss_pred cc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhh-----CCC-CCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcC--C
Q 046547 168 HP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSS-----AEC-VPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNM--G 237 (343)
Q Consensus 168 ~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~ 237 (343)
.| -..+++.|-..|++.|++++|...++...+ .|. .|. ..-++.+...++..+++++|..++....+-. -
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 12 235677777889999999998877766532 121 222 2346778888999999999999888755311 1
Q ss_pred CCC----chhHHHHHHHHHHhCccHHHHHHHHHHHHHc------CCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 238 LMP----RQGMVIKVAAALRANREMWKAVEMIEFLERK------GCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 238 ~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
..+ -..+++.|-..|.+.|++++|.+++++.... +..+. ...++.|-..|.+.+++.+|.++|.+....
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467999999999999999999999987642 11222 346778888899999999999999875543
Q ss_pred ----CC-CC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 307 ----GF-IP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 307 ----g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
|. .| ...+|..|...|.+.|+++.|.++.+...+++
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~ 480 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAR 480 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 21 12 35689999999999999999999998887653
No 54
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.04 E-value=1.8e-07 Score=86.97 Aligned_cols=288 Identities=12% Similarity=0.046 Sum_probs=141.7
Q ss_pred hhhhhhchhhhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhc---CCCCChH-------HHh--hhhhh
Q 046547 8 SCRSLVNFRPCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA---CQNPNPF-------SFL--SNFPQ 75 (343)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~-------~~~--~~~~~ 75 (343)
.+.++..+...+.........+.....|.+-......|++..|.+.|++.... ...++.. -|+ .+.-.
T Consensus 429 ~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~ 508 (1018)
T KOG2002|consen 429 PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEE 508 (1018)
T ss_pred hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHh
Confidence 44445555555544444444455666777777777777777777777665543 1122221 232 22223
Q ss_pred cccchHHHHHHHHhcCCCCCCCCh-hhHHHHHHHHhhcCCChHHHHHHHHHHHhcC-CCccHHHHHHHHH-HHHhccCch
Q 046547 76 NHRIKVIDEMLESFIPLRPRSRPK-IAYDYLLSYTLQSLHPLPLALAILQRTLRSG-CVPVPQIRLLLSS-AWLERRCQS 152 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~-~~~~~~~~~ 152 (343)
.++...++++........| .- ..|--+.. .....++..+|...+.+..... -.|+..+ +++ .+.+.. .+
T Consensus 509 l~~~~~A~e~Yk~Ilkehp---~YId~ylRl~~-ma~~k~~~~ea~~~lk~~l~~d~~np~ars---l~G~~~l~k~-~~ 580 (1018)
T KOG2002|consen 509 LHDTEVAEEMYKSILKEHP---GYIDAYLRLGC-MARDKNNLYEASLLLKDALNIDSSNPNARS---LLGNLHLKKS-EW 580 (1018)
T ss_pred hhhhhHHHHHHHHHHHHCc---hhHHHHHHhhH-HHHhccCcHHHHHHHHHHHhcccCCcHHHH---HHHHHHHhhh-hh
Confidence 4455566666665543322 32 22222221 2223345566666666654322 2233322 222 233322 34
Q ss_pred hHHHHHHHHHHhcC-CccCHhhHHHHHHHHHc------------cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC
Q 046547 153 QSVADILLEMKSIG-YHPDCGTCNYLVSSLCA------------IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219 (343)
Q Consensus 153 ~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 219 (343)
..|.+-|+...+.- ..+|+.+.-.|-+.|.+ .+..++|+++|.+..+.. +-|...-|-+--.++..
T Consensus 581 ~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~k 659 (1018)
T KOG2002|consen 581 KPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEK 659 (1018)
T ss_pred cccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhc
Confidence 45555444443221 12333333333332321 123455566666555432 33555555566666666
Q ss_pred CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHH
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGK 298 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~ 298 (343)
|++.+|..+|.+..+. .. -+..+|-.+..+|+..|++..|+++|+...+. .-.-+....+.|-+++.+.|.+.+|.+
T Consensus 660 g~~~~A~dIFsqVrEa-~~-~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~ 737 (1018)
T KOG2002|consen 660 GRFSEARDIFSQVREA-TS-DFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKE 737 (1018)
T ss_pred cCchHHHHHHHHHHHH-Hh-hCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHH
Confidence 6666666666666652 22 23334556666666666666666666654433 223344455566666666666666666
Q ss_pred HHHHHhHC
Q 046547 299 TVMGMTER 306 (343)
Q Consensus 299 ~~~~m~~~ 306 (343)
.+......
T Consensus 738 ~ll~a~~~ 745 (1018)
T KOG2002|consen 738 ALLKARHL 745 (1018)
T ss_pred HHHHHHHh
Confidence 66555444
No 55
>PF12854 PPR_1: PPR repeat
Probab=99.02 E-value=3.7e-10 Score=61.71 Aligned_cols=32 Identities=16% Similarity=0.251 Sum_probs=18.8
Q ss_pred CCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 307 GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 307 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 55555555555555555555555555555555
No 56
>PF12854 PPR_1: PPR repeat
Probab=98.99 E-value=6.1e-10 Score=60.86 Aligned_cols=32 Identities=31% Similarity=0.531 Sum_probs=16.1
Q ss_pred CCccCHhhHHHHHHHHHccCcHHHHHHHHHHh
Q 046547 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 166 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
|+.||..|||+||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 44455555555555555555555555555444
No 57
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.96 E-value=8.2e-07 Score=80.47 Aligned_cols=258 Identities=14% Similarity=0.003 Sum_probs=181.4
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hc
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL-ER 148 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~ 148 (343)
+.++...|+.+.+-+.++. .....+|...+.-....++.+.|+.++|..+|..+.+.+ |+...|-..+.... -.
T Consensus 11 ~~il~e~g~~~~AL~~L~~---~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEK---NEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHCCCHHHHHHHHHh---hhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhh
Confidence 5566666665555554444 345566776666666558889999999999999999977 88877765554433 11
Q ss_pred ----cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH-HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChh
Q 046547 149 ----RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV-EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN 223 (343)
Q Consensus 149 ----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 223 (343)
..+.+...++++++... -|.......+.-.+..-..+. .+...+..+...|+++ +|+.|-..|....+.+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~ 160 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAA 160 (517)
T ss_pred cccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHH
Confidence 12356677888888664 355555544443444333443 4556677788888754 5677777777666666
Q ss_pred HHHHHHHHHHhcC-------------CCCCch--hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHH
Q 046547 224 DAVEMMKEMVLNM-------------GLMPRQ--GMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGC 287 (343)
Q Consensus 224 ~a~~~~~~m~~~~-------------~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~ 287 (343)
-..+++....... .-+|+. .++.-+...|-..|+.++|++++++.++. .|+ +..|..-.+.|
T Consensus 161 ~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Karil 238 (517)
T PF12569_consen 161 IIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKARIL 238 (517)
T ss_pred HHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHH
Confidence 6666666655310 123444 34466677788999999999999999884 566 45777777889
Q ss_pred HhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 288 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
-+.|++.+|.+.++.....+. -|...=+.....+.++|+.++|.+++..+.+
T Consensus 239 Kh~G~~~~Aa~~~~~Ar~LD~-~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr 290 (517)
T PF12569_consen 239 KHAGDLKEAAEAMDEARELDL-ADRYINSKCAKYLLRAGRIEEAEKTASLFTR 290 (517)
T ss_pred HHCCCHHHHHHHHHHHHhCCh-hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcC
Confidence 999999999999999988774 3777778888999999999999999887654
No 58
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.91 E-value=5.2e-07 Score=78.08 Aligned_cols=221 Identities=10% Similarity=-0.050 Sum_probs=169.0
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
.|+.-.|..-|+........++.. |.-+-..|.... +.++..+.|....+.+ +-++.+|..=-..+.-.+++++|..
T Consensus 339 ~g~~~~a~~d~~~~I~l~~~~~~l-yI~~a~~y~d~~-~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 339 KGDSLGAQEDFDAAIKLDPAFNSL-YIKRAAAYADEN-QSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred cCCchhhhhhHHHHHhcCcccchH-HHHHHHHHhhhh-ccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHH
Confidence 478888999999988765444431 444444566765 6788899998887754 3456778777777788899999999
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc-
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK- 271 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~- 271 (343)
=|++.++.. +-+...|-.+..+..+.++++++...|++... .++-.+..|+-....+...+++++|.+.|+...+.
T Consensus 416 DF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 416 DFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 999988754 23567787888888899999999999999995 77778889999999999999999999999988753
Q ss_pred ----CCCCc--hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 272 ----GCPIG--FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 272 ----g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
++..+ ..+-..++..- -.+++..|.+++.+..+.+-+ ....|.+|...-.+.|+.++|+++|++-..+
T Consensus 493 ~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 493 PREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred cccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 11111 22222333322 348999999999999876522 4567999999999999999999999986543
No 59
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.89 E-value=4.8e-07 Score=74.51 Aligned_cols=233 Identities=12% Similarity=-0.002 Sum_probs=180.7
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHH-HHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN-YLV 178 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll 178 (343)
.-|..-|..|+.+.|.+.+|.+.|+.-.+.- |-+.||..|-..|-+. ++...|+.++.+-.+. .|-.+||- -+-
T Consensus 223 wwWk~Q~gkCylrLgm~r~AekqlqssL~q~--~~~dTfllLskvY~ri-dQP~~AL~~~~~gld~--fP~~VT~l~g~A 297 (478)
T KOG1129|consen 223 WWWKQQMGKCYLRLGMPRRAEKQLQSSLTQF--PHPDTFLLLSKVYQRI-DQPERALLVIGEGLDS--FPFDVTYLLGQA 297 (478)
T ss_pred HHHHHHHHHHHHHhcChhhhHHHHHHHhhcC--CchhHHHHHHHHHHHh-ccHHHHHHHHhhhhhc--CCchhhhhhhhH
Confidence 3455566568889999999999999987754 6667888888887665 5789999999887764 45445553 344
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
+.+-..++.++|.++++...+.. ..+.....++..+|.-.++.+-|+++++.+.+ .|+. ++..|+.+--+|.-.+++
T Consensus 298 Ri~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLq-mG~~-speLf~NigLCC~yaqQ~ 374 (478)
T KOG1129|consen 298 RIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQ-MGAQ-SPELFCNIGLCCLYAQQI 374 (478)
T ss_pred HHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHH-hcCC-ChHHHhhHHHHHHhhcch
Confidence 56667789999999999887653 34666777788888899999999999999997 5875 667888888888999999
Q ss_pred HHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 046547 259 WKAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 336 (343)
|.++.-|.+....--.|+.. .|=.+-...+..|++..|.+-|.-....+ .-+...++.|.---.+.|+.++|..+++
T Consensus 375 D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~ 453 (478)
T KOG1129|consen 375 DLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLN 453 (478)
T ss_pred hhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHH
Confidence 99999999887654444433 34445555677899999999999877665 2356788888888889999999999998
Q ss_pred HHHhh
Q 046547 337 RFAEL 341 (343)
Q Consensus 337 ~m~~~ 341 (343)
...+.
T Consensus 454 ~A~s~ 458 (478)
T KOG1129|consen 454 AAKSV 458 (478)
T ss_pred Hhhhh
Confidence 76654
No 60
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.89 E-value=3.1e-06 Score=72.26 Aligned_cols=196 Identities=11% Similarity=-0.047 Sum_probs=115.3
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCcc-CHhhHHHHHHHHHccCcH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-DCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~ 187 (343)
.+...|+++.|...|++..+.. +.+...|+.+-..+...+ ++++|...|+...+. .| +..+|..+...+...|++
T Consensus 73 ~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g-~~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~ 148 (296)
T PRK11189 73 LYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAG-NFDAAYEAFDSVLEL--DPTYNYAYLNRGIALYYGGRY 148 (296)
T ss_pred HHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCH
Confidence 4566788888888888877743 123455666655555554 688888888887764 34 345666677777778888
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 188 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
++|.+.|+...+.. |+..........+...++.++|...|..... ...|+...+ .+.. ...|+...+ +.+..
T Consensus 149 ~eA~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~--~~~~~~~~~-~~~~--~~lg~~~~~-~~~~~ 220 (296)
T PRK11189 149 ELAQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYE--KLDKEQWGW-NIVE--FYLGKISEE-TLMER 220 (296)
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHh--hCCccccHH-HHHH--HHccCCCHH-HHHHH
Confidence 88888888877643 4332222222233456678888888866553 333433222 2222 223444333 23444
Q ss_pred HHHc---CC--CC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHH
Q 046547 268 LERK---GC--PI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317 (343)
Q Consensus 268 m~~~---g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (343)
+.+. .. .| ....|..+-..+.+.|++++|...|++..+.+ +||..-+..
T Consensus 221 ~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-~~~~~e~~~ 275 (296)
T PRK11189 221 LKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-VYNFVEHRY 275 (296)
T ss_pred HHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CchHHHHHH
Confidence 4321 11 11 23467777777888888888888888877655 335444443
No 61
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.88 E-value=2.9e-07 Score=77.65 Aligned_cols=210 Identities=17% Similarity=0.073 Sum_probs=132.6
Q ss_pred HHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHH
Q 046547 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~ 161 (343)
...++..... ...|.......+-. ++....+-+.++.-+++....+..++..++..+........+++++|+++++.
T Consensus 51 ~~~vl~ei~~--~~~~~l~av~~la~-y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~ 127 (290)
T PF04733_consen 51 YDSVLSEIKK--SSSPELQAVRLLAE-YLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHK 127 (290)
T ss_dssp HHHHHHHS-T--TSSCCCHHHHHHHH-HHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTT
T ss_pred hhHHHHHhcc--CCChhHHHHHHHHH-HHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHc
Confidence 4455555432 22556555555554 45444455666666655544443333344444443333334578888887754
Q ss_pred HHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH----hcCCChhHHHHHHHHHHhcCC
Q 046547 162 MKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM----STARKTNDAVEMMKEMVLNMG 237 (343)
Q Consensus 162 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~ 237 (343)
- .+.......+..|.+.++++.|.+.++.|.+.. .|. +...+..++ ...+.+.+|.-+|+++.+ .
T Consensus 128 ~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~ 196 (290)
T PF04733_consen 128 G------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSD--K 196 (290)
T ss_dssp T------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--C
T ss_pred c------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--c
Confidence 2 356667778888999999999999999998753 343 333344443 334578999999999874 5
Q ss_pred CCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccH-hHHHHHHHHHhHC
Q 046547 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY-ILAGKTVMGMTER 306 (343)
Q Consensus 238 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 306 (343)
..+++.+.|.+..++...|++++|.+++.+..+..- -+..+...++-.....|+. +.+.+++.+++..
T Consensus 197 ~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~-~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 197 FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDP-NDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-C-CHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc-CCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 678888899999999999999999999998765432 2455666677777777777 6677888888764
No 62
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.86 E-value=1.4e-05 Score=74.90 Aligned_cols=301 Identities=11% Similarity=-0.025 Sum_probs=198.6
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHch--hcCCCCChHHH-hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHH-
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFE--EACQNPNPFSF-LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL- 105 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~--~~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l- 105 (343)
+.-.+-.-.......|++..|+.+|.... .....||+..- ...+...+..+.+..+++.+.++.|. ++.++-.|
T Consensus 163 Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~--~v~alv~L~ 240 (1018)
T KOG2002|consen 163 NILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAFERALQLDPT--CVSALVALG 240 (1018)
T ss_pred chHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHHHHHHhcChh--hHHHHHHHH
Confidence 33334333444556789999999999855 35557777654 45666778888888888888777552 22222111
Q ss_pred -HHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCc--cCHhhHHHHHHHHH
Q 046547 106 -LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLC 182 (343)
Q Consensus 106 -i~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~ 182 (343)
+...+.....+..+...+...-... .-++...+.|-+.|.-.+ ++..+..+...+...-.. .-...|-.+-.+|-
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~-dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~H 318 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKK-DYERVWHLAEHAIKNTENKSIKAESFYQLGRSYH 318 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcc-cHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 1112223334666777776654322 224445556666665554 799999988888654311 12356778889999
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhh--HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc----
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPDLES--YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---- 256 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~---- 256 (343)
..|++++|...|-+..+. .|+..+ +--|...+.+.|+.+.+...|+.... ..+-+..|..+|-..|+..+
T Consensus 319 a~Gd~ekA~~yY~~s~k~--~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k--~~p~~~etm~iLG~Lya~~~~~~~ 394 (1018)
T KOG2002|consen 319 AQGDFEKAFKYYMESLKA--DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLK--QLPNNYETMKILGCLYAHSAKKQE 394 (1018)
T ss_pred hhccHHHHHHHHHHHHcc--CCCCccccccchhHHHHHhchHHHHHHHHHHHHH--hCcchHHHHHHHHhHHHhhhhhhH
Confidence 999999999999776554 455433 44567889999999999999999885 45555666666666666664
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh----HCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT----ERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~----~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
..++|..++.+..+.- ..|...|-.+-..+. .++...++.+|.... ..+-.+.+...|.+..-....|++.+|.
T Consensus 395 ~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e-~~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~ 472 (1018)
T KOG2002|consen 395 KRDKASNVLGKVLEQT-PVDSEAWLELAQLLE-QTDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKAL 472 (1018)
T ss_pred HHHHHHHHHHHHHhcc-cccHHHHHHHHHHHH-hcChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHH
Confidence 4566666666665532 235556665555554 444444476666543 4555677889999999999999999999
Q ss_pred HHHHHHHh
Q 046547 333 VVRQRFAE 340 (343)
Q Consensus 333 ~~~~~m~~ 340 (343)
..|.....
T Consensus 473 ~~f~~A~~ 480 (1018)
T KOG2002|consen 473 EHFKSALG 480 (1018)
T ss_pred HHHHHHhh
Confidence 99987654
No 63
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.82 E-value=1.9e-05 Score=73.43 Aligned_cols=301 Identities=12% Similarity=0.008 Sum_probs=206.6
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-HH---hhhhhhcccchHHHHHHHHhcCCCCCCCCh-hhHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-SF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPK-IAYD 103 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~ 103 (343)
.....|-.+-..|-..|+.+++...+- ......|... -| .......+.+..+.--+...++..|. +. ..|.
T Consensus 171 ~~~~ay~tL~~IyEqrGd~eK~l~~~l--lAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~--n~~~~~e 246 (895)
T KOG2076|consen 171 RNPIAYYTLGEIYEQRGDIEKALNFWL--LAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPS--NWELIYE 246 (895)
T ss_pred cchhhHHHHHHHHHHcccHHHHHHHHH--HHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCc--chHHHHH
Confidence 355678999999999999988887654 3333444433 33 23334556666666666666655442 32 2333
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHH----HHHHHHHhccCchhHHHHHHHHHHh-cCCccCHhhHHHHH
Q 046547 104 YLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL----LLSSAWLERRCQSQSVADILLEMKS-IGYHPDCGTCNYLV 178 (343)
Q Consensus 104 ~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~----~li~~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll 178 (343)
-.. .|.+.|+...|..-|.++.+..-+.|..-+- ..++.+...+. -+.|.+.++.... .+-..+...++++.
T Consensus 247 rs~--L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~-~e~a~~~le~~~s~~~~~~~~ed~ni~a 323 (895)
T KOG2076|consen 247 RSS--LYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNE-RERAAKALEGALSKEKDEASLEDLNILA 323 (895)
T ss_pred HHH--HHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHhhccccccccHHHHHH
Confidence 322 5778899999999999998864322222222 23445555554 4778777776655 33345667889999
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCC---------------------------CCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAEC---------------------------VPDLESYSIVIGAMSTARKTNDAVEMMKE 231 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~---------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 231 (343)
..|.+..+++.|......+..... .++..++ -++-++......+...-+...
T Consensus 324 el~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~-rl~icL~~L~~~e~~e~ll~~ 402 (895)
T KOG2076|consen 324 ELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVI-RLMICLVHLKERELLEALLHF 402 (895)
T ss_pred HHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhH-hHhhhhhcccccchHHHHHHH
Confidence 999999999999988888766222 2222231 122344445555555555555
Q ss_pred HHhcCCC--CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 232 MVLNMGL--MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 232 m~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
...+ .+ .-+...|.-+..+|...|++.+|+.+|..+...-..-+...|-.+-.+|...|.+++|.+.|+...... +
T Consensus 403 l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p 480 (895)
T KOG2076|consen 403 LVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-P 480 (895)
T ss_pred HHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-C
Confidence 5553 53 345677999999999999999999999999876554567788889999999999999999999988653 2
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
-+...-.+|-.-+-+.|+.++|.+.++.|.
T Consensus 481 ~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 481 DNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred CchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 245555667778899999999999998764
No 64
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.82 E-value=2.2e-07 Score=76.47 Aligned_cols=222 Identities=9% Similarity=-0.009 Sum_probs=131.8
Q ss_pred hhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchh
Q 046547 74 PQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQ 153 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~ 153 (343)
.+.|-...+++-++.-.. ..|-+.||-.|-+ .|.+..++..|+.++.+-.+ ..|-.+||..=+.-.....++.+
T Consensus 234 lrLgm~r~AekqlqssL~---q~~~~dTfllLsk-vY~ridQP~~AL~~~~~gld--~fP~~VT~l~g~ARi~eam~~~~ 307 (478)
T KOG1129|consen 234 LRLGMPRRAEKQLQSSLT---QFPHPDTFLLLSK-VYQRIDQPERALLVIGEGLD--SFPFDVTYLLGQARIHEAMEQQE 307 (478)
T ss_pred HHhcChhhhHHHHHHHhh---cCCchhHHHHHHH-HHHHhccHHHHHHHHhhhhh--cCCchhhhhhhhHHHHHHHHhHH
Confidence 344444445554444332 1234455555554 66666777777777776655 34666666554443334444567
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
+|.++++...+.. +.++.....+-.+|.-.++++-|+..++++.+.|+. +...|+.+--+|...+++|-++.-|....
T Consensus 308 ~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAl 385 (478)
T KOG1129|consen 308 DALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRAL 385 (478)
T ss_pred HHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHH
Confidence 7777777665542 334555555666666777777777777777777753 55666666666777777777777666655
Q ss_pred hcCCCCCch--hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 234 LNMGLMPRQ--GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 234 ~~~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.- --.|+. .+|-.+-...+..|++..|.+.|+-.....- -....+|.|--.-.+.|+++.|..++....+
T Consensus 386 st-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~-~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 386 ST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDA-QHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred hh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCc-chHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 41 222322 2344555555667777777777776554321 2345666666666677777777777776554
No 65
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.81 E-value=1.1e-05 Score=63.55 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=108.7
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
+-..|+...|..-+++..+.. |+. .+|..+-..| +..++.+.|.+.|+...+.. +-+..+.|..-..+|..|+++
T Consensus 45 YL~~gd~~~A~~nlekAL~~D--Ps~~~a~~~~A~~Y-q~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~~~ 120 (250)
T COG3063 45 YLQQGDYAQAKKNLEKALEHD--PSYYLAHLVRAHYY-QKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGRPE 120 (250)
T ss_pred HHHCCCHHHHHHHHHHHHHhC--cccHHHHHHHHHHH-HHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCChH
Confidence 445567777777777766643 433 3333333333 33345666777666665532 223455666666666777777
Q ss_pred HHHHHHHHhhhCCC-CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAEC-VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 189 ~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
+|...|++....-. .--..||..+.-+..+.|+++.|...|+.-.+ --+-...+.-.+.....+.|+.-.|..+++.
T Consensus 121 eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~--~dp~~~~~~l~~a~~~~~~~~y~~Ar~~~~~ 198 (250)
T COG3063 121 EAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALE--LDPQFPPALLELARLHYKAGDYAPARLYLER 198 (250)
T ss_pred HHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHH--hCcCCChHHHHHHHHHHhcccchHHHHHHHH
Confidence 77777766655321 11244566666666666777777777766653 2222334455566666666777777766666
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 268 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
....+. ++..+....|+.--..|+.+.+-++=.++..
T Consensus 199 ~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 199 YQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 665544 5666666666666666666666655554443
No 66
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.75 E-value=0.00011 Score=64.57 Aligned_cols=301 Identities=8% Similarity=-0.073 Sum_probs=160.5
Q ss_pred HHHHHHHHhCccCcchHHHHHHHchhcCC-CCChH--HH--hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHH---H
Q 046547 34 LEETVRAAVDAKDYQQIPELLGSFEEACQ-NPNPF--SF--LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY---L 105 (343)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~--~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~---l 105 (343)
|..+...+...|+.+.+...+.......- .++.. .+ .......++.+.+.+..+......|. |...++. +
T Consensus 9 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~--~~~a~~~~~~~ 86 (355)
T cd05804 9 HAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPR--DLLALKLHLGA 86 (355)
T ss_pred HHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC--cHHHHHHhHHH
Confidence 44444555556667776555555443211 22221 12 22334556666666666655443342 2333331 1
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHH-HHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRL-LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 184 (343)
.. .....+..+.+.+.+.. ..+..|+..... .+-..+... |++++|.+.+++..+.. +.+...+..+-..+...
T Consensus 87 ~~-~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~-G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~ 161 (355)
T cd05804 87 FG-LGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEA-GQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQ 161 (355)
T ss_pred HH-hcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc
Confidence 11 11223455555555554 222334443333 222334444 46889999999888753 33456777788888899
Q ss_pred CcHHHHHHHHHHhhhCCC-CCCH--hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHH-H--HHHHHHHhCccH
Q 046547 185 DQLVEAAKVLKGMSSAEC-VPDL--ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-I--KVAAALRANREM 258 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~--~li~~~~~~~~~ 258 (343)
|++++|...+++...... .|+. ..|-.+...+...|++++|..++++........+..... + .++.-+...|..
T Consensus 162 g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~ 241 (355)
T cd05804 162 GRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHV 241 (355)
T ss_pred CCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCC
Confidence 999999999888776432 2332 235567788888999999999999876321111222211 1 223333333432
Q ss_pred HHHHHH--HHHHHHcCCCCchhhHH--HHHHHHHhcccHhHHHHHHHHHhHCCCC------C--CHHHHHHHHHHHhccC
Q 046547 259 WKAVEM--IEFLERKGCPIGFQGYE--VVVEGCLECREYILAGKTVMGMTERGFI------P--YIKVRQKVVEGLAGVG 326 (343)
Q Consensus 259 ~~a~~~--~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~------p--~~~~~~~li~~~~~~g 326 (343)
+.+.+. +..............+. ....++...|+.+.|..+++.+...... . .....-..-.++...|
T Consensus 242 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g 321 (355)
T cd05804 242 DVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEG 321 (355)
T ss_pred ChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcC
Confidence 222222 11111111111112222 4566678888999999999887653221 1 1222222233456889
Q ss_pred ChhHHHHHHHHHHhh
Q 046547 327 EWKLATVVRQRFAEL 341 (343)
Q Consensus 327 ~~~~a~~~~~~m~~~ 341 (343)
++++|.+.+.+...+
T Consensus 322 ~~~~A~~~L~~al~~ 336 (355)
T cd05804 322 NYATALELLGPVRDD 336 (355)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999988876543
No 67
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.75 E-value=2.1e-05 Score=67.16 Aligned_cols=217 Identities=11% Similarity=-0.039 Sum_probs=120.5
Q ss_pred CChHHHHHHHHHHHhcC-CCccH--HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHH
Q 046547 114 HPLPLALAILQRTLRSG-CVPVP--QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~-~~p~~--~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 190 (343)
+..+.++.-+.++.... ..|+. ..|..+-..+...| +.++|...|++..+.. +.+...|+.+-..+...|++++|
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g-~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLG-LRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 45566666666665432 22222 22333333444443 5777777777776643 23456777777777777888888
Q ss_pred HHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 191 AKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 191 ~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
...|+...+.. | +..+|..+..++...|++++|.+.|+...+. .|+..........+...++.++|...+.+..
T Consensus 118 ~~~~~~Al~l~--P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 118 YEAFDSVLELD--PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 77777776543 3 3456666677777777788887777777642 2332211121222334566777777776544
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC---CC--CC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER---GF--IP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.. ..|+... ..+. ....|+...+ +.+..+.+. .. .| ....|..+...+.+.|++++|...|++..+..
T Consensus 193 ~~-~~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 193 EK-LDKEQWG-WNIV--EFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred hh-CCccccH-HHHH--HHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 32 2222211 1222 2234444443 244444321 11 11 23467777777777788888887777766553
No 68
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.75 E-value=3e-05 Score=69.89 Aligned_cols=150 Identities=9% Similarity=-0.070 Sum_probs=85.5
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHH
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 262 (343)
+.|++-.|..+++.-.-.+ +-+...|-..|..-.+.|+.+.|..++.+..+ .++.+...|..-|....+.++-....
T Consensus 731 k~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~ 807 (913)
T KOG0495|consen 731 KDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSI 807 (913)
T ss_pred HhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHH
Confidence 3344444444444443332 12334444444555555555555554444442 34444444444444444443322222
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 263 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+-+++ ..-|.+..-.+-..|....++++|.+.|.+....+ +-+-.+|..+..-+.+.|.-++-.+++.+...-
T Consensus 808 DALkk-----ce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~~ 880 (913)
T KOG0495|consen 808 DALKK-----CEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCETA 880 (913)
T ss_pred HHHHh-----ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 22221 22345555566667888888999999999988765 234567888888899999888888888877653
No 69
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.73 E-value=1e-06 Score=74.44 Aligned_cols=213 Identities=16% Similarity=0.093 Sum_probs=141.5
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH-HHHHHccCcHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL-VSSLCAIDQLVEA 190 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-l~~~~~~~~~~~a 190 (343)
..|+.+.+ +.+..... .|.......+. .|+....+-+.+..-+++....+..++..++..+ -..+...|++++|
T Consensus 47 Alg~~~~v---l~ei~~~~-~~~l~av~~la-~y~~~~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~A 121 (290)
T PF04733_consen 47 ALGQYDSV---LSEIKKSS-SPELQAVRLLA-EYLSSPSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEA 121 (290)
T ss_dssp HTT-HHHH---HHHS-TTS-SCCCHHHHHHH-HHHCTSTTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHH
T ss_pred HcCChhHH---HHHhccCC-ChhHHHHHHHH-HHHhCccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHH
Confidence 34766544 44444433 67766665554 4455433344555555444433333222233333 2456678999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh----CccHHHHHHHHH
Q 046547 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA----NREMWKAVEMIE 266 (343)
Q Consensus 191 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~ 266 (343)
++++..- .+.......+..|.+.+++|.|.+.++.|.+ ...| .+...+..++.. ..++.+|..+|+
T Consensus 122 L~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~---~~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~ 191 (290)
T PF04733_consen 122 LKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQ---IDED-SILTQLAEAWVNLATGGEKYQDAFYIFE 191 (290)
T ss_dssp HCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC---CSCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred HHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh---cCCc-HHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 9887642 4567778889999999999999999999984 2333 455556666554 346899999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh-hHHHHHHHHHHhh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW-KLATVVRQRFAEL 341 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~ 341 (343)
++.+. ..++..+.+.+..+....|++++|.+++.+..+.+ +-+..+...++......|+. +.+.+++.+++..
T Consensus 192 El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 192 ELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 98764 56788899999999999999999999999987665 33677777888888888877 6778888887754
No 70
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.68 E-value=6.6e-05 Score=66.04 Aligned_cols=226 Identities=12% Similarity=0.001 Sum_probs=138.4
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHH-HHHHHHHHHHhc---cCchhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHc
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQ-IRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPD-CGTCNYLVSSLCA 183 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~---~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~ 183 (343)
.+...|++++|.+.+++..+.. |+.. .+.. ...+... .+..+.+.+.+.. .....|+ ......+...+..
T Consensus 52 ~~~~~g~~~~A~~~~~~~l~~~--P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~ 126 (355)
T cd05804 52 SAWIAGDLPKALALLEQLLDDY--PRDLLALKL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEE 126 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHH
Confidence 3445689999999999988753 4433 3332 1111111 1234455555544 1122333 2334455567888
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch--hHHHHHHHHHHhCccHHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ--GMVIKVAAALRANREMWKA 261 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~li~~~~~~~~~~~a 261 (343)
.|++++|...+++..+.. +.+...+..+...+...|++++|..++++........|+. ..|..+...+...|++++|
T Consensus 127 ~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A 205 (355)
T cd05804 127 AGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAA 205 (355)
T ss_pred cCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHH
Confidence 999999999999998864 3346678888899999999999999999987521112333 3455788889999999999
Q ss_pred HHHHHHHHHcCC-CCchhhH-H--HHHHHHHhcccHhHHHHH--HHHHhHCCC--CCCHHHHHHHHHHHhccCChhHHHH
Q 046547 262 VEMIEFLERKGC-PIGFQGY-E--VVVEGCLECREYILAGKT--VMGMTERGF--IPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 262 ~~~~~~m~~~g~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~g~--~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
..++++...... .+..... + .++.-+...|..+.+.++ +........ ............++...|+.+.|.+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~ 285 (355)
T cd05804 206 LAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDK 285 (355)
T ss_pred HHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHH
Confidence 999999864322 1212111 1 223334444443333332 111111111 1112222356778889999999999
Q ss_pred HHHHHHh
Q 046547 334 VRQRFAE 340 (343)
Q Consensus 334 ~~~~m~~ 340 (343)
+++.+..
T Consensus 286 ~L~~l~~ 292 (355)
T cd05804 286 LLAALKG 292 (355)
T ss_pred HHHHHHH
Confidence 9998865
No 71
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.67 E-value=3.5e-05 Score=60.77 Aligned_cols=199 Identities=9% Similarity=-0.031 Sum_probs=159.9
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHh
Q 046547 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS 217 (343)
Q Consensus 138 ~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 217 (343)
..-|--+|...| +...|..-+++..++. +-+..+|..+-..|-+.|+.+.|.+-|++..+... -+..+.|.--.-+|
T Consensus 38 rlqLal~YL~~g-d~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-~~GdVLNNYG~FLC 114 (250)
T COG3063 38 RLQLALGYLQQG-DYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-NNGDVLNNYGAFLC 114 (250)
T ss_pred HHHHHHHHHHCC-CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC-CccchhhhhhHHHH
Confidence 344455778876 6889999999998864 33467888888899999999999999999887542 24566777777788
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHH
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILA 296 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a 296 (343)
..|++++|...|+.........--..+|..+--+..+.|+.+.|...|++..+. .|+ ..+.-.+.....+.|++-.|
T Consensus 115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~--dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL--DPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh--CcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999876444444568888888889999999999999998874 233 34566677888899999999
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 297 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..+++.....+. ++.......|+---+.|+.+.+.+.=.++.++-
T Consensus 193 r~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~f 237 (250)
T COG3063 193 RLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 999999888775 888888888998889999999988777766553
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=98.65 E-value=1.4e-05 Score=71.94 Aligned_cols=245 Identities=14% Similarity=0.071 Sum_probs=158.6
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
.+...+...|...|+++.|..+++..... + ..... -..|.+.+.---+.-++.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~------------l-------------~k~~G--~~hl~va~~l~~~a~~y~ 252 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRI------------L-------------EKTSG--LKHLVVASMLNILALVYR 252 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH------------H-------------HHccC--ccCHHHHHHHHHHHHHHH
Confidence 45556888888999999999999876542 0 00000 011222211111223566
Q ss_pred cCCChHHHHHHHHHHHhc-----C-CCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHh-----cCCc-cCH-hhHHHH
Q 046547 112 SLHPLPLALAILQRTLRS-----G-CVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKS-----IGYH-PDC-GTCNYL 177 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~-----~g~~-~~~-~~~~~l 177 (343)
..+++++|..+|+++..- | ..|. ..+++.|-..|++.| ++++|...++...+ .|.. |.+ ..++.+
T Consensus 253 ~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~G-Kf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~ 331 (508)
T KOG1840|consen 253 SLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQG-KFAEAEEYCERALEIYEKLLGASHPEVAAQLSEL 331 (508)
T ss_pred HhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccC-ChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHH
Confidence 778888888888887632 2 1222 233444555677765 58777766655432 1222 222 236667
Q ss_pred HHHHHccCcHHHHHHHHHHhhhC---CCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHHhcC-----CCCCc-hhH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSA---ECVPD----LESYSIVIGAMSTARKTNDAVEMMKEMVLNM-----GLMPR-QGM 244 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~-~~~ 244 (343)
...++..+++++|..++....+. -..++ ..+|+.|-..|...|++++|.+++++...+. +..+. ...
T Consensus 332 ~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~ 411 (508)
T KOG1840|consen 332 AAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKP 411 (508)
T ss_pred HHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHH
Confidence 77788889999998888765431 12222 4678999999999999999999999877531 12222 456
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHH----cCC-CCc-hhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLER----KGC-PIG-FQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~----~g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
++.|-..|.+.++.++|.++|.+... -|. .|+ ..+|..|...|...|++++|.++.+...
T Consensus 412 l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 412 LNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 78888889888999988888887542 232 233 3578889999999999999999888765
No 73
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=7.4e-05 Score=66.24 Aligned_cols=284 Identities=8% Similarity=-0.010 Sum_probs=187.0
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchh-cCCCCChHHH-hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEE-ACQNPNPFSF-LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~~~~p~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
.+.+....-...+...+++.+..++++...+ .++.++...+ +..+...|+...+-.+-..+....|. ...+|-++-
T Consensus 242 ~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~--~a~sW~aVg 319 (611)
T KOG1173|consen 242 ENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS--KALSWFAVG 319 (611)
T ss_pred hcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC--CCcchhhHH
Confidence 4566677777788889999999999998776 4445555544 56666666655554444444443332 346666666
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
- +|-..|..++|.+.|.+...-. |. ...|-..-++|.-.+ .-+.|...+...-+. ++-..-.+-.+---|.+.+
T Consensus 320 ~-YYl~i~k~seARry~SKat~lD--~~fgpaWl~fghsfa~e~-EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~ 394 (611)
T KOG1173|consen 320 C-YYLMIGKYSEARRYFSKATTLD--PTFGPAWLAFGHSFAGEG-EHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTN 394 (611)
T ss_pred H-HHHHhcCcHHHHHHHHHHhhcC--ccccHHHHHHhHHhhhcc-hHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhc
Confidence 4 3444588999999999875422 22 234666666666665 467777776665442 1111112222334577788
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC-CCC----CchhHHHHHHHHHHhCccHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM-GLM----PRQGMVIKVAAALRANREMWK 260 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~----p~~~~~~~li~~~~~~~~~~~ 260 (343)
.++.|.+.|.+.... .+-|....+-+--.....+.+.+|..+|+...... .+. --..+++.|--+|.+.+..++
T Consensus 395 n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e 473 (611)
T KOG1173|consen 395 NLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE 473 (611)
T ss_pred cHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence 888999888877653 23356667766666666788888888888766310 111 133457777788888899999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHh
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 323 (343)
|+..++...... +-+..+|.++--.|...|+++.|.+.|.+.. .+.||..+...++..+.
T Consensus 474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL--~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKAL--ALKPDNIFISELLKLAI 533 (611)
T ss_pred HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHH--hcCCccHHHHHHHHHHH
Confidence 999988877643 3367788888888888999999999888765 56687766666665443
No 74
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.62 E-value=1.3e-05 Score=66.17 Aligned_cols=180 Identities=13% Similarity=-0.009 Sum_probs=97.7
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC----HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH--hhHH
Q 046547 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD----CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL--ESYS 210 (343)
Q Consensus 137 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~ 210 (343)
.+-.+...+...+ ++++|...+++.... .|+ ..++..+..++.+.|++++|...++++.+....... .++.
T Consensus 35 ~~~~~g~~~~~~~-~~~~A~~~~~~~~~~--~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 35 ELYEEAKEALDSG-DYTEAIKYFEALESR--YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred HHHHHHHHHHHcC-CHHHHHHHHHHHHHh--CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3334444444543 466666666666543 222 124455556666666666666666666553311111 1233
Q ss_pred HHHHHHhcC--------CChhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHH
Q 046547 211 IVIGAMSTA--------RKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281 (343)
Q Consensus 211 ~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 281 (343)
.+-.++... |+.++|.+.|+.+... .|+. ..+..+... .. ... ... ...-
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~-~~---~~~------~~~--------~~~~ 170 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRM-DY---LRN------RLA--------GKEL 170 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHH-HH---HHH------HHH--------HHHH
Confidence 333333332 4556666666666532 2222 122111111 00 000 000 0011
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCC-CC-CHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGF-IP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.+...|.+.|++++|...+++..+..- .| ....+..+..++.+.|++++|..+++.+..
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344568889999999999999887631 12 457788999999999999999999888764
No 75
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.61 E-value=0.00014 Score=65.71 Aligned_cols=299 Identities=11% Similarity=0.019 Sum_probs=196.8
Q ss_pred HHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-HHhhh---hhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 31 LRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-SFLSN---FPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
..++..-...|.+.+.++-|..+|...... .|... .|..+ =..+|..+.++.+++......|. ....|-...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--ae~lwlM~a 591 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--AEILWLMYA 591 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--chhHHHHHH
Confidence 345666777777777788888887765543 33332 33222 23566677777777776543332 223343333
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
+ -.-..|++..|..++.+..+..-. +...|-.-+.--... .+++.|..+|.+... ..|+...|..-++.-.-.+.
T Consensus 592 k-e~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en-~e~eraR~llakar~--~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 592 K-EKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFEN-DELERARDLLAKARS--ISGTERVWMKSANLERYLDN 666 (913)
T ss_pred H-HHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhcc-ccHHHHHHHHHHHhc--cCCcchhhHHHhHHHHHhhh
Confidence 3 333458888899888888775422 444555555543343 468888888887765 46777777776666667788
Q ss_pred HHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
.++|.+++++..+. -|+ ...|-.+-..+-+.++++.|...|..-.. .++-....|-.|...=-+.|++-+|..++
T Consensus 667 ~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWllLakleEk~~~~~rAR~il 742 (913)
T KOG0495|consen 667 VEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWLLLAKLEEKDGQLVRARSIL 742 (913)
T ss_pred HHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHHHHHHHHHHhcchhhHHHHH
Confidence 88888888877764 233 34566666667777777777777776552 45555666777777667777888888888
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC----C-------------------------CCCCHHHHH
Q 046547 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER----G-------------------------FIPYIKVRQ 316 (343)
Q Consensus 266 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g-------------------------~~p~~~~~~ 316 (343)
+..+-++- -+...|-..|+.=.+.|+.+.|..+..+..+. | ..-|+++.-
T Consensus 743 drarlkNP-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVll 821 (913)
T KOG0495|consen 743 DRARLKNP-KNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLL 821 (913)
T ss_pred HHHHhcCC-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHH
Confidence 87765542 35667777888888888888777766655432 1 223566666
Q ss_pred HHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 317 KVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 317 ~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
.+...+....+++.|.+.|++-.+..|
T Consensus 822 aia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 822 AIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 777778888889999999988876653
No 76
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.56 E-value=0.00024 Score=64.06 Aligned_cols=297 Identities=14% Similarity=0.052 Sum_probs=169.7
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCC-CCChHHH---------hhhhhhcccchHHHHHHHHhcCCCCCCCChhh
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQ-NPNPFSF---------LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIA 101 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 101 (343)
..|.....+.--.|+...|..+++....... .|+...+ +..+... +..+++++.+....+..-|...
T Consensus 144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~---g~~q~ale~L~~~e~~i~Dkla 220 (700)
T KOG1156|consen 144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEA---GSLQKALEHLLDNEKQIVDKLA 220 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHc---ccHHHHHHHHHhhhhHHHHHHH
Confidence 3467777777778999999999998886553 5666655 2222233 3356666666554444334444
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL-ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
+--.-...+.+.+++++|..++..+.... ||..-|...+.... +.....+....+|....+. ++.....-..=++.
T Consensus 221 ~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~-y~r~e~p~Rlplsv 297 (700)
T KOG1156|consen 221 FEETKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEK-YPRHECPRRLPLSV 297 (700)
T ss_pred HhhhHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhc-CcccccchhccHHH
Confidence 43333335667789999999999998865 88888776655433 2332233333566655432 11111111111112
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh---cCC----------CCCchhH--H
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL---NMG----------LMPRQGM--V 245 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~----------~~p~~~~--~ 245 (343)
.....-.+...+++..+.+.|+++- +..+..-|-.....+-..++.-.+.. ..| -+|+... +
T Consensus 298 l~~eel~~~vdkyL~~~l~Kg~p~v---f~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~ 374 (700)
T KOG1156|consen 298 LNGEELKEIVDKYLRPLLSKGVPSV---FKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTL 374 (700)
T ss_pred hCcchhHHHHHHHHHHHhhcCCCch---hhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHH
Confidence 2222334445566677777777553 33333333222221111111111111 001 1444433 4
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 046547 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 324 (343)
-.++..+-+.|+++.|...++...+ ..|+.. -|-.=.+.+...|++++|..++++..+-+ .||...=..-..-..+
T Consensus 375 y~laqh~D~~g~~~~A~~yId~AId--HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLr 451 (700)
T KOG1156|consen 375 YFLAQHYDKLGDYEVALEYIDLAID--HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLR 451 (700)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhc--cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHH
Confidence 4556677788888888888887765 345433 34333466788888888888888887766 4565554466677778
Q ss_pred cCChhHHHHHHHHHHh
Q 046547 325 VGEWKLATVVRQRFAE 340 (343)
Q Consensus 325 ~g~~~~a~~~~~~m~~ 340 (343)
+.+.++|.++...+.+
T Consensus 452 An~i~eA~~~~skFTr 467 (700)
T KOG1156|consen 452 ANEIEEAEEVLSKFTR 467 (700)
T ss_pred ccccHHHHHHHHHhhh
Confidence 8888888887776654
No 77
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=2.4e-05 Score=68.08 Aligned_cols=212 Identities=10% Similarity=-0.000 Sum_probs=146.6
Q ss_pred HHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCC-CccHHHHHHHHHHHHhccCchhHHHHHHH
Q 046547 82 IDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPVPQIRLLLSSAWLERRCQSQSVADILL 160 (343)
Q Consensus 82 ~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~~~~~~~a~~~~~ 160 (343)
..+-++..+.+.+..++...+.++ .+....+.++..+.|++..+.+- .||......=+..+ . .++++|..=|+
T Consensus 345 a~~d~~~~I~l~~~~~~lyI~~a~---~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~fl--L-~q~e~A~aDF~ 418 (606)
T KOG0547|consen 345 AQEDFDAAIKLDPAFNSLYIKRAA---AYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFL--L-QQYEEAIADFQ 418 (606)
T ss_pred hhhhHHHHHhcCcccchHHHHHHH---HHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHH--H-HHHHHHHHHHH
Confidence 333444444445554454444443 45677888999999999887542 34544444444432 2 25888888888
Q ss_pred HHHhcCCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc----
Q 046547 161 EMKSIGYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN---- 235 (343)
Q Consensus 161 ~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---- 235 (343)
+.+.. .| +...|--+--+..+.++++++...|++.++. ++--...|+.....+...+++++|.+.|+...+-
T Consensus 419 Kai~L--~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~ 495 (606)
T KOG0547|consen 419 KAISL--DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE 495 (606)
T ss_pred HHhhc--ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc
Confidence 88764 34 3455666666667889999999999999875 4556788999999999999999999999998741
Q ss_pred CCCCCch--hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 236 MGLMPRQ--GMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 236 ~~~~p~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.++..+. .+--+++.. .-.+++..|..++++..+ +.|- ...|..|-..-.+.|+.++|+++|++-..
T Consensus 496 ~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e--~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~ 565 (606)
T KOG0547|consen 496 HLIIVNAAPLVHKALLVL-QWKEDINQAENLLRKAIE--LDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQ 565 (606)
T ss_pred ccccccchhhhhhhHhhh-chhhhHHHHHHHHHHHHc--cCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 0111122 222222222 234899999999999887 4453 45888999999999999999999997643
No 78
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=0.0003 Score=60.28 Aligned_cols=235 Identities=11% Similarity=-0.036 Sum_probs=135.4
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 177 (343)
|+.....+-+ ++...|+.+.|...|++... +.|+..+-.-+-..+....++.+....+...+.... +-+...|-.-
T Consensus 231 NvhLl~~lak-~~~~~Gdn~~a~~~Fe~~~~--~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 231 NEHLMMALGK-CLYYNGDYFQAEDIFSSTLC--ANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred cHHHHHHHhh-hhhhhcCchHHHHHHHHHhh--CChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 4566666665 67777888999888888765 346554422222222222234555555544443321 1222223222
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
........++..|+.+-++..+... -+...|-.--..+...+++++|.-.|+..+. --+-+...|..|+.+|...|+
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~-r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~ 383 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEP-RNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKR 383 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCc-ccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhch
Confidence 3333445555556555555544321 1222232222344455566666666665541 222344556666666666655
Q ss_pred HHHHH------------------------------------HHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHH
Q 046547 258 MWKAV------------------------------------EMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 258 ~~~a~------------------------------------~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~ 300 (343)
+.+|. ++++.-.. +.|+-. ..+.+...+...|+..++..++
T Consensus 384 ~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~--~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 384 FKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLK--INPIYTPAVNLIAELCQVEGPTKDIIKLL 461 (564)
T ss_pred HHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhc--cCCccHHHHHHHHHHHHhhCccchHHHHH
Confidence 55554 33333222 334432 4556666788899999999999
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
+.... ..||....+.|.+.+.....+.+|.+.|....+++|
T Consensus 462 e~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 462 EKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence 88764 468999999999999999999999999988776653
No 79
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.50 E-value=2.4e-07 Score=51.18 Aligned_cols=31 Identities=13% Similarity=0.118 Sum_probs=12.9
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCC
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 275 (343)
||++|.+|++.|++++|.++|++|.+.|+.|
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p 33 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLERGIEP 33 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence 4444444444444444444444444444443
No 80
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.49 E-value=2.3e-07 Score=51.23 Aligned_cols=33 Identities=33% Similarity=0.508 Sum_probs=17.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 205 (343)
+||.+|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 455555555555555555555555555555554
No 81
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.47 E-value=0.00026 Score=60.67 Aligned_cols=264 Identities=11% Similarity=0.015 Sum_probs=180.4
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH----HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF----SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 104 (343)
-+++....+.+.+...|+.++|...|++.... .|... .|..++...|+.+..+.+...+..........+....
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~ 307 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHA 307 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhh
Confidence 36777888999999999999999999976543 45444 3567778888888888887777654322212222221
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHH-HHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHc
Q 046547 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSS-AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 105 li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 183 (343)
-+ .+ ...+++.|+.+-++..+.. |...---++-. .+...+ ..++|.--|+...... +-+...|.-|+.+|..
T Consensus 308 ~~--l~-~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~~~-R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA 380 (564)
T KOG1174|consen 308 QL--LY-DEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIALE-RHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLA 380 (564)
T ss_pred hh--hh-hhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHhcc-chHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHh
Confidence 12 22 2367999999998887643 44333222222 333444 5788888888776532 3567899999999999
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHH-HHHh-cCCChhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHhCccHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVI-GAMS-TARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWK 260 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~ 260 (343)
.|++.+|.-+-....+. .+.+..+.+.+- ..+. ...--++|.++++.-. .+.|+- ...+.+...+...|..+.
T Consensus 381 ~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D 456 (564)
T KOG1174|consen 381 QKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSL---KINPIYTPAVNLIAELCQVEGPTKD 456 (564)
T ss_pred hchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhh---ccCCccHHHHHHHHHHHHhhCccch
Confidence 99999988665554332 223344443331 1121 2223478888888765 345653 446777788889999999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+..+++.... ..||....+.|-+.+...+.+.+|++.|......+
T Consensus 457 ~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 457 IIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999998776 57899999999999999999999999998776543
No 82
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.45 E-value=3.8e-07 Score=50.01 Aligned_cols=31 Identities=10% Similarity=0.097 Sum_probs=13.2
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCC
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCP 274 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 274 (343)
+|+++|.+|++.|+++.|.++|++|.+.|++
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~ 33 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVK 33 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3444444444444444444444444444443
No 83
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.44 E-value=4.6e-06 Score=73.28 Aligned_cols=124 Identities=10% Similarity=0.041 Sum_probs=89.6
Q ss_pred CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC--CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchh
Q 046547 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA--ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243 (343)
Q Consensus 166 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 243 (343)
+.+.+......+++.+....+++.+..++.+.... ....-..|..++++.|...|..+.++.+++.=.. +|+-||..
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~-yGiF~D~~ 139 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQ-YGIFPDNF 139 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhh-cccCCChh
Confidence 44556667777777777777778888777777654 2222234556788888888888888888877665 68888888
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
++|.||..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877766666667777666666554
No 84
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=3.6e-05 Score=70.17 Aligned_cols=222 Identities=14% Similarity=0.037 Sum_probs=147.4
Q ss_pred CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHH
Q 046547 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY 176 (343)
Q Consensus 97 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 176 (343)
|....-..++...+.+.|-...|..++++... |.-.|.+|+..| +.++|..+..+..+ -+||+..|..
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlem---------w~~vi~CY~~lg-~~~kaeei~~q~le--k~~d~~lyc~ 462 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEM---------WDPVILCYLLLG-QHGKAEEINRQELE--KDPDPRLYCL 462 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHH---------HHHHHHHHHHhc-ccchHHHHHHHHhc--CCCcchhHHH
Confidence 33344444444456667778888888887643 455566777766 67788888777766 3778888888
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
+......-.-+++|.++++..-.. .-..+-....+.++++++.+.|+.-.+- -+.-..+|-.+=.+..+.+
T Consensus 463 LGDv~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~--nplq~~~wf~~G~~ALqle 533 (777)
T KOG1128|consen 463 LGDVLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEI--NPLQLGTWFGLGCAALQLE 533 (777)
T ss_pred hhhhccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhc--CccchhHHHhccHHHHHHh
Confidence 877776666677887777654332 1111222223367777777777765532 1223445666666667777
Q ss_pred cHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 046547 257 EMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
++..|.+.|..-.. ..|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+
T Consensus 534 k~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~ 610 (777)
T KOG1128|consen 534 KEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAY 610 (777)
T ss_pred hhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHH
Confidence 88888888877665 4454 4478888888888888888888888877766 344566777777778888888888888
Q ss_pred HHHHhhc
Q 046547 336 QRFAELK 342 (343)
Q Consensus 336 ~~m~~~~ 342 (343)
.++.+++
T Consensus 611 ~rll~~~ 617 (777)
T KOG1128|consen 611 HRLLDLR 617 (777)
T ss_pred HHHHHhh
Confidence 8776653
No 85
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.42 E-value=0.0016 Score=60.18 Aligned_cols=86 Identities=16% Similarity=-0.009 Sum_probs=65.2
Q ss_pred hCccHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcccHhHHHH--HHHHHhHCCCCCCHHHHHHHHHHHhccCChhH
Q 046547 254 ANREMWKAVEMIEFLERKGCPIGF-QGYEVVVEGCLECREYILAGK--TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 330 (343)
..|++++|.+.|..... +.|+. .+.+++-..+.+.|+...|.. ++.++.+.+ +.+...|-.+...+-+.|+.+.
T Consensus 696 ~~~~~~EA~~af~~Al~--ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~ 772 (799)
T KOG4162|consen 696 VKGQLEEAKEAFLVALA--LDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQ 772 (799)
T ss_pred HHHhhHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHH
Confidence 34555566665555443 45553 367788888889998888887 888888776 4478889999999999999999
Q ss_pred HHHHHHHHHhhc
Q 046547 331 ATVVRQRFAELK 342 (343)
Q Consensus 331 a~~~~~~m~~~~ 342 (343)
|.+.|.-..++.
T Consensus 773 Aaecf~aa~qLe 784 (799)
T KOG4162|consen 773 AAECFQAALQLE 784 (799)
T ss_pred HHHHHHHHHhhc
Confidence 999998877664
No 86
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=0.0009 Score=57.49 Aligned_cols=227 Identities=7% Similarity=-0.051 Sum_probs=149.1
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
+.+...+..++|+...+++.+ +.|+..+ |+..-..+...+..+++++..++++.+.. +-+..+|+.--..+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~--lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~ 121 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIR--LNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGP 121 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCc
Confidence 466677888999999999887 3466554 33222233333335788899988887754 2334456655444555554
Q ss_pred --HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC---cc----
Q 046547 187 --LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---RE---- 257 (343)
Q Consensus 187 --~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---~~---- 257 (343)
.+++..+++++.+... -|-.+|+....++...|+++++++.++++.+. . +-+...|+.....+.+. |.
T Consensus 122 ~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~ 198 (320)
T PLN02789 122 DAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAM 198 (320)
T ss_pred hhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-C-CCchhHHHHHHHHHHhcccccccccc
Confidence 3677888888886543 36778888888888889999999999999863 3 33455666655555443 22
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc----ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-------
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC----REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG------- 326 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g------- 326 (343)
.++..+...++.... +-|...|+.+-..+... ++..+|.+.+.+..+.+ ..+......|++.|+...
T Consensus 199 ~e~el~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~ 276 (320)
T PLN02789 199 RDSELKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFR 276 (320)
T ss_pred HHHHHHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhh
Confidence 245677776666532 22455777776666662 44567888888876644 336677888888888643
Q ss_pred -----------ChhHHHHHHHHHHhhc
Q 046547 327 -----------EWKLATVVRQRFAELK 342 (343)
Q Consensus 327 -----------~~~~a~~~~~~m~~~~ 342 (343)
..++|.++++.+.+.+
T Consensus 277 ~~~~~~~~~~~~~~~a~~~~~~l~~~d 303 (320)
T PLN02789 277 DTVDTLAEELSDSTLAQAVCSELEVAD 303 (320)
T ss_pred hhhhccccccccHHHHHHHHHHHHhhC
Confidence 3477888888886544
No 87
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=98.40 E-value=6.9e-06 Score=72.18 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=104.7
Q ss_pred hcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc--CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC
Q 046547 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI--GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205 (343)
Q Consensus 128 ~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 205 (343)
..+.+.+......+++.. ....+++.+..++...... ....-..|.+++++.|.+.|..++++.++..=...|+-||
T Consensus 59 ~~~~~vS~~dld~fvn~~-~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 59 ERKKPVSSLDLDIFVNNV-ESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred hcCCCCcHHHHHHHHhhc-CCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 345566777778888774 4445788899888888754 3333345678999999999999999999999999999999
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 255 (343)
..|||.||+.+.+.|++..|.++...|..+ +...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQ-e~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKKGNYKSAAKVATEMMLQ-EEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhcccHHHHHHHHHHHHHh-hccCCchHHHHHHHHHHHh
Confidence 999999999999999999999999999975 7778888888888887776
No 88
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.39 E-value=5.2e-07 Score=49.45 Aligned_cols=32 Identities=19% Similarity=0.206 Sum_probs=14.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 204 (343)
+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
No 89
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.38 E-value=0.00047 Score=67.45 Aligned_cols=232 Identities=13% Similarity=0.020 Sum_probs=170.5
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc--H---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV--P---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~--~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 173 (343)
...|-..|. .....++.+.|.++.++.... +.+. . -.|.++++.--.-| .-+...++|++..+.. -....
T Consensus 1458 Si~WI~YMa-f~LelsEiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG-~eesl~kVFeRAcqyc--d~~~V 1532 (1710)
T KOG1070|consen 1458 SILWIRYMA-FHLELSEIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYG-TEESLKKVFERACQYC--DAYTV 1532 (1710)
T ss_pred chHHHHHHH-HHhhhhhhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhC-cHHHHHHHHHHHHHhc--chHHH
Confidence 567777785 667788999999999998743 2221 1 23445554322333 4577889999998752 23456
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC--chhHHHHHHHH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP--RQGMVIKVAAA 251 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~ 251 (343)
|..|...|.+.+++++|.++++.|.+.-- -....|...+..+.+.++-+.|.+++.+... -++- ......-.+..
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqL 1609 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQL 1609 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHH
Confidence 88899999999999999999999987532 4677888899999999999999999999874 3322 34445556666
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCChh
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY--IKVRQKVVEGLAGVGEWK 329 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~ 329 (343)
-.+.|+.+++..+|+.....- +--...|+..|+.=.+.|+.+.+..+|++....++.|- -..|..+++.=-..|+-.
T Consensus 1610 EFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1610 EFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEK 1688 (1710)
T ss_pred HhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchh
Confidence 678999999999999887642 22456899999999999999999999999999998874 345666666555567766
Q ss_pred HHHHHHHHHH
Q 046547 330 LATVVRQRFA 339 (343)
Q Consensus 330 ~a~~~~~~m~ 339 (343)
.++.+=.+..
T Consensus 1689 ~vE~VKarA~ 1698 (1710)
T KOG1070|consen 1689 NVEYVKARAK 1698 (1710)
T ss_pred hHHHHHHHHH
Confidence 6555544433
No 90
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.37 E-value=0.00023 Score=57.48 Aligned_cols=148 Identities=13% Similarity=0.020 Sum_probs=90.4
Q ss_pred hccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHh----cCCCh
Q 046547 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS----TARKT 222 (343)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~----~~~~~ 222 (343)
..++++++|++..+.. - +......=...+.+..+++-|.+.+++|.+- -+..|.+-|..+++ ..+..
T Consensus 119 ~~~~~~deAl~~~~~~----~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 119 MHDGDFDEALKALHLG----E--NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hcCCChHHHHHHHhcc----c--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 3345678887777652 1 2222333334456667778888888888764 24445554444443 34567
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccH-hHHHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY-ILAGKTVM 301 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~a~~~~~ 301 (343)
.+|.-+|++|.+ ..+|+..+-+.+..++...|++++|..++++...+.-. +..|...+|-.-...|.. +...+.+.
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 788888888874 56777778888888888888888888888887765433 344444444443344433 44455666
Q ss_pred HHhHC
Q 046547 302 GMTER 306 (343)
Q Consensus 302 ~m~~~ 306 (343)
+++..
T Consensus 267 QLk~~ 271 (299)
T KOG3081|consen 267 QLKLS 271 (299)
T ss_pred HHHhc
Confidence 65543
No 91
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.36 E-value=8.7e-05 Score=59.22 Aligned_cols=129 Identities=10% Similarity=0.035 Sum_probs=98.8
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH-HhCcc--HH
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL-RANRE--MW 259 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~-~~~~~--~~ 259 (343)
..++.+++...++...+.. +.|...|..+...|...|++++|...|+.... -.+-+...+..+..++ ...|+ .+
T Consensus 51 ~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~ 127 (198)
T PRK10370 51 SQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQ--LRGENAELYAALATVLYYQAGQHMTP 127 (198)
T ss_pred CchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcH
Confidence 4677788888887776654 45788899999999999999999999999885 3344667777777764 56676 59
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHH
Q 046547 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 316 (343)
+|.+++++..+..-. +...+..+-..+.+.|++++|...|+++.+.. .|+..-+.
T Consensus 128 ~A~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~-~~~~~r~~ 182 (198)
T PRK10370 128 QTREMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN-SPRVNRTQ 182 (198)
T ss_pred HHHHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCccHHH
Confidence 999999998885422 55677778888899999999999999988764 45554443
No 92
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.36 E-value=0.0015 Score=57.22 Aligned_cols=153 Identities=8% Similarity=-0.015 Sum_probs=99.5
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH----hcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM----STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
..+++.+.++|....+ =++....||+-+=-.| .+..++..|.+++.... |.-|-..+|...|..=.+.+++|
T Consensus 379 ~ed~ertr~vyq~~l~-lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efD 454 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD-LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFD 454 (677)
T ss_pred hhhHHHHHHHHHHHHh-hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHH
Confidence 3455555555555554 2333344444332222 34566777777777765 66777788888888888888888
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
.+..+++...+.+- -|..+|.-....=...|+.+.|..+|+-.++.... -....|.+.|+-=...|.++.|..+++++
T Consensus 455 RcRkLYEkfle~~P-e~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerl 533 (677)
T KOG1915|consen 455 RCRKLYEKFLEFSP-ENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERL 533 (677)
T ss_pred HHHHHHHHHHhcCh-HhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHH
Confidence 88888888887542 25566666666666788888888888887765211 11233444444445678899999988887
Q ss_pred Hhh
Q 046547 339 AEL 341 (343)
Q Consensus 339 ~~~ 341 (343)
.+.
T Consensus 534 L~r 536 (677)
T KOG1915|consen 534 LDR 536 (677)
T ss_pred HHh
Confidence 664
No 93
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.33 E-value=0.00024 Score=69.45 Aligned_cols=201 Identities=13% Similarity=0.039 Sum_probs=157.2
Q ss_pred ccH-HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-----HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 046547 133 PVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-----CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206 (343)
Q Consensus 133 p~~-~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 206 (343)
|++ ..|-..|....+.+ +.++|.++.++.... +.+. ...|.++++.-..-|.-+...++|++..+.. -.-
T Consensus 1455 PNSSi~WI~YMaf~Lels-EiekAR~iaerAL~t-IN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~ 1530 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELS-EIEKARKIAERALKT-INFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAY 1530 (1710)
T ss_pred CCcchHHHHHHHHHhhhh-hhHHHHHHHHHHhhh-CCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chH
Confidence 544 44666676666665 689999999988653 3222 2467777777777788889999999998752 225
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh---HHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG---YEVV 283 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l 283 (343)
..|..|...|.+.+.+++|.++++.|.++.+ -....|...+..+.++++.+.|..++.+..+ .-|...+ ..-.
T Consensus 1531 ~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~Iskf 1606 (1710)
T KOG1070|consen 1531 TVHLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKF 1606 (1710)
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHH
Confidence 5689999999999999999999999997555 5677899999999999999999999999876 3444222 2233
Q ss_pred HHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++.=.+.|+.+.+..+|+.....-- --...|+..|+.=.+.|+.+.++.+|++..+++
T Consensus 1607 AqLEFk~GDaeRGRtlfEgll~ayP-KRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1607 AQLEFKYGDAERGRTLFEGLLSAYP-KRTDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred HHHHhhcCCchhhHHHHHHHHhhCc-cchhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 3444578999999999999877642 246789999999999999999999999998775
No 94
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.33 E-value=0.0013 Score=55.29 Aligned_cols=313 Identities=14% Similarity=0.061 Sum_probs=194.8
Q ss_pred hhhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHH--H--hhhhhhcccchHHHHHHHHhcCC
Q 046547 17 PCLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFS--F--LSNFPQNHRIKVIDEMLESFIPL 92 (343)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 92 (343)
.++....+..+..++.---.+-+.+.-.|++.+|+..|....+- .|+... | ...+...|+.+-+-.=+....++
T Consensus 24 ~~~e~a~~~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel 101 (504)
T KOG0624|consen 24 LFLEGAESTASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL 101 (504)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc
Confidence 33333333333233333445667788889999999998876543 333321 1 34445555543322222222222
Q ss_pred CCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCc----cH--------HHHH--HHHHHHHhccCchhHHHHH
Q 046547 93 RPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP----VP--------QIRL--LLSSAWLERRCQSQSVADI 158 (343)
Q Consensus 93 ~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p----~~--------~~~~--~li~~~~~~~~~~~~a~~~ 158 (343)
.||-..-..-=...+.+.|.++.|..=|+...++...- +. ..++ ..+..+.. +|+...|+..
T Consensus 102 ---KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~-~GD~~~ai~~ 177 (504)
T KOG0624|consen 102 ---KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASG-SGDCQNAIEM 177 (504)
T ss_pred ---CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhc-CCchhhHHHH
Confidence 33432222111134557899999999999998765211 11 1111 11222233 3578888888
Q ss_pred HHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC
Q 046547 159 LLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL 238 (343)
Q Consensus 159 ~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 238 (343)
+..+.+.. +=|+..|..--.+|...|++.+|+.=++...+..- -++.++--+-..+...|+.+.++...++.. .+
T Consensus 178 i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---Kl 252 (504)
T KOG0624|consen 178 ITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KL 252 (504)
T ss_pred HHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---cc
Confidence 88887742 23667777778899999999999877766654432 245555556667778899999988888876 44
Q ss_pred CCchhH----HHHH---------HHHHHhCccHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcccHhHHHHHHHH
Q 046547 239 MPRQGM----VIKV---------AAALRANREMWKAVEMIEFLERKGCPIGFQ---GYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 239 ~p~~~~----~~~l---------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
.||-.. |..| +......++|-++.+-.+...+..-..... .+..+-.+|...|++.+|++.-.+
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~e 332 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKE 332 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHH
Confidence 566432 2221 223445677777777777766543221222 344566778889999999999998
Q ss_pred HhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 303 MTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 303 m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..+. .|| ..++--=..+|.-..++|+|+.=|+...++.
T Consensus 333 vL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 333 VLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 8764 354 7777777789999999999999999887765
No 95
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.32 E-value=0.00018 Score=59.32 Aligned_cols=183 Identities=11% Similarity=-0.041 Sum_probs=116.3
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH--h
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP----QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC--G 172 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~ 172 (343)
...+-.+.. .+...|+++.|...|++..... |+. .++..+...+...+ ++++|...++++.+....... .
T Consensus 33 ~~~~~~~g~-~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~la~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~ 108 (235)
T TIGR03302 33 AEELYEEAK-EALDSGDYTEAIKYFEALESRY--PFSPYAEQAQLDLAYAYYKSG-DYAEAIAAADRFIRLHPNHPDADY 108 (235)
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCchHH
Confidence 334444443 4556799999999999987743 432 34455556666665 699999999999875322111 1
Q ss_pred hHHHHHHHHHcc--------CcHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchh
Q 046547 173 TCNYLVSSLCAI--------DQLVEAAKVLKGMSSAECVPDLE-SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243 (343)
Q Consensus 173 ~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 243 (343)
++..+-.++.+. |+.++|.+.|+.+.... |+.. .+..+.... . .......
T Consensus 109 a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~a~~~~~-~---------~~~~~~~--------- 167 (235)
T TIGR03302 109 AYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY--PNSEYAPDAKKRMD-Y---------LRNRLAG--------- 167 (235)
T ss_pred HHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC--CCChhHHHHHHHHH-H---------HHHHHHH---------
Confidence 344445555544 78899999999988753 4432 222221110 0 0001110
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKG--CPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
..-.+...+.+.|++++|...+....+.. -+.....+..+..++.+.|++++|..+++.+...
T Consensus 168 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 168 KELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 11245566888899999999999887642 1123457778888899999999999988887654
No 96
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.32 E-value=0.00014 Score=64.64 Aligned_cols=246 Identities=10% Similarity=-0.007 Sum_probs=175.2
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhh---hcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFP---QNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
+....+..-|..+...|+...-..+=.+|.+.- +..+.+|..+-+ ..++...+.+-+.....+.+.- ...|-.+
T Consensus 276 fh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~f--gpaWl~f 352 (611)
T KOG1173|consen 276 FHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTF--GPAWLAF 352 (611)
T ss_pred CCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccc--cHHHHHH
Confidence 455567777889999998888887777776542 334456643333 3466667777666665554421 2445555
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhc--C-CCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHH
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRS--G-CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLC 182 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~--~-~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~ 182 (343)
-+ .++..|.-++|...+...-+- | ..|. .|.. + -|...+ ..+.|.+.|.+.... .+.|+...+.+--...
T Consensus 353 gh-sfa~e~EhdQAmaaY~tAarl~~G~hlP~--LYlg-m-ey~~t~-n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay 425 (611)
T KOG1173|consen 353 GH-SFAGEGEHDQAMAAYFTAARLMPGCHLPS--LYLG-M-EYMRTN-NLKLAEKFFKQALAI-APSDPLVLHELGVVAY 425 (611)
T ss_pred hH-HhhhcchHHHHHHHHHHHHHhccCCcchH--HHHH-H-HHHHhc-cHHHHHHHHHHHHhc-CCCcchhhhhhhheee
Confidence 54 677788999999999887542 1 1222 1222 2 234444 588999999988764 3557788888877778
Q ss_pred ccCcHHHHHHHHHHhhhC----C--CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 183 AIDQLVEAAKVLKGMSSA----E--CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~----~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
..+.+.+|..+|+..+.. + ...-..+++.|-.+|.+.+..++|+..++.... -.+-|..++.++--.|...|
T Consensus 426 ~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~--l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 426 TYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALL--LSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred hHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHH--cCCCchhHHHHHHHHHHHhc
Confidence 889999999999887621 1 111234688999999999999999999999985 56678899999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
+++.|.+.|++..- +.|+..+-..++..+.
T Consensus 504 nld~Aid~fhKaL~--l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA--LKPDNIFISELLKLAI 533 (611)
T ss_pred ChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence 99999999998765 7888877777766544
No 97
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.28 E-value=0.00031 Score=57.65 Aligned_cols=26 Identities=8% Similarity=0.005 Sum_probs=15.7
Q ss_pred hhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 277 FQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
..||..++-.||+..-++.|-+++-+
T Consensus 310 ~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 310 PETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred hHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 34666666666666666666666554
No 98
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.27 E-value=0.00058 Score=55.19 Aligned_cols=89 Identities=15% Similarity=0.062 Sum_probs=42.2
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh----CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA----NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 289 (343)
..+.+..+++-|.+.++.|.+- -+..|.+.|..++.+ .+++..|.-+|++|-++ ..|+..+-+-...++..
T Consensus 145 qI~lk~~r~d~A~~~lk~mq~i----ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~ 219 (299)
T KOG3081|consen 145 QILLKMHRFDLAEKELKKMQQI----DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQ 219 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHcc----chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHH
Confidence 3344444555555555555431 233444444444433 23455555555555432 34444555555555555
Q ss_pred cccHhHHHHHHHHHhHCC
Q 046547 290 CREYILAGKTVMGMTERG 307 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~~~g 307 (343)
.|++++|..++++..++.
T Consensus 220 ~~~~eeAe~lL~eaL~kd 237 (299)
T KOG3081|consen 220 LGRYEEAESLLEEALDKD 237 (299)
T ss_pred hcCHHHHHHHHHHHHhcc
Confidence 555555555555555443
No 99
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=98.26 E-value=0.0025 Score=55.85 Aligned_cols=99 Identities=9% Similarity=0.016 Sum_probs=43.2
Q ss_pred HHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
+-..+..=.+.+++..|..+|+..... -|.+.-+ +..=-..|++.-+.++++.-... .|+...|++.|+ .
T Consensus 110 WlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w---~P~eqaW~sfI~-f 183 (677)
T KOG1915|consen 110 WLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEW---EPDEQAWLSFIK-F 183 (677)
T ss_pred HHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcC---CCcHHHHHHHHH-H
Confidence 333444444444444444444443321 2333221 22222334444444444443322 345555666654 3
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHHHHHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLL 140 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 140 (343)
=.+-+.++.|..++++.+- +.|+..+|.-
T Consensus 184 ElRykeieraR~IYerfV~--~HP~v~~wik 212 (677)
T KOG1915|consen 184 ELRYKEIERARSIYERFVL--VHPKVSNWIK 212 (677)
T ss_pred HHHhhHHHHHHHHHHHHhe--ecccHHHHHH
Confidence 3344555556666655544 2355444433
No 100
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.26 E-value=2.2e-05 Score=54.64 Aligned_cols=39 Identities=13% Similarity=0.248 Sum_probs=17.6
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHh
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAEC-VPDLESYSIVIGAMS 217 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~ 217 (343)
..+...+++.....+|+.+++.|+ .|+..+|+.++.+.+
T Consensus 33 ~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~ 72 (120)
T PF08579_consen 33 NSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIA 72 (120)
T ss_pred HHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHH
Confidence 333333444444444444444444 444444444444443
No 101
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=98.24 E-value=1.6e-05 Score=55.34 Aligned_cols=68 Identities=21% Similarity=0.356 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHhcCC-ccCHhhHHHHHHHHHccC--------cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc
Q 046547 151 QSQSVADILLEMKSIGY-HPDCGTCNYLVSSLCAID--------QLVEAAKVLKGMSSAECVPDLESYSIVIGAMST 218 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 218 (343)
++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++-..+.+|++|...+++|+..||+.++..+.+
T Consensus 40 d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk 116 (120)
T PF08579_consen 40 DYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK 116 (120)
T ss_pred chHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence 56667777777777777 677777777777665532 233455666666666666666666666665543
No 102
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.24 E-value=0.0036 Score=56.90 Aligned_cols=289 Identities=10% Similarity=-0.016 Sum_probs=180.7
Q ss_pred HHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcc-------cchHHHHHHHHhcCCCCCC----------
Q 046547 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNH-------RIKVIDEMLESFIPLRPRS---------- 96 (343)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~---------- 96 (343)
+-...+-|-+.|+.+.|..+|++..... -|.+.-+....|..+ +.+.+-++.+....+ |..
T Consensus 390 w~~faklYe~~~~l~~aRvifeka~~V~-y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 390 WVEFAKLYENNGDLDDARVIFEKATKVP-YKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSE 467 (835)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHhhcCC-ccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCC
Confidence 5666777888999999999999876543 233433333333222 233333344433322 111
Q ss_pred -------CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCcc
Q 046547 97 -------RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP 169 (343)
Q Consensus 97 -------p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~ 169 (343)
.+...|+.+++ +-...|-++....+++++.+..+-.....-|-. .+.....-++++.+++++-...=-.|
T Consensus 468 pvQ~rlhrSlkiWs~y~D-leEs~gtfestk~vYdriidLriaTPqii~NyA--mfLEeh~yfeesFk~YErgI~LFk~p 544 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYAD-LEESLGTFESTKAVYDRIIDLRIATPQIIINYA--MFLEEHKYFEESFKAYERGISLFKWP 544 (835)
T ss_pred cHHHHHHHhHHHHHHHHH-HHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHH--HHHHhhHHHHHHHHHHHcCCccCCCc
Confidence 12334556665 555667888899999999876543222222222 23455566788888887655443344
Q ss_pred CH-hhHHHHHHHHHc---cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH--hcCCChhHHHHHHHHHHhcCCCCCch-
Q 046547 170 DC-GTCNYLVSSLCA---IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM--STARKTNDAVEMMKEMVLNMGLMPRQ- 242 (343)
Q Consensus 170 ~~-~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~~~~~~~a~~~~~~m~~~~~~~p~~- 242 (343)
+. ..|+..+.-+.+ ...++.|..+|++..+ |++|.-.-+--|+.+- -..|-...|+.+++.... ++++..
T Consensus 545 ~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~a~~ 621 (835)
T KOG2047|consen 545 NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKEAQR 621 (835)
T ss_pred cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCHHHH
Confidence 43 356666655544 3478999999999998 7777644333333332 234778889999999874 676654
Q ss_pred -hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHH---HHHhcccHhHHHHHHHHHhHC-CCCCCHHHHHH
Q 046547 243 -GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE---GCLECREYILAGKTVMGMTER-GFIPYIKVRQK 317 (343)
Q Consensus 243 -~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~---~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~ 317 (343)
..||+.|.-....=.+.....+|++.++ .-|+...-...|+ .=++.|.++.|..++..-.+- .-..+..-|.+
T Consensus 622 l~myni~I~kaae~yGv~~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~t 699 (835)
T KOG2047|consen 622 LDMYNIYIKKAAEIYGVPRTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDT 699 (835)
T ss_pred HHHHHHHHHHHHHHhCCcccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHH
Confidence 5688888876666567777888888887 3677665444443 356789999999998764432 22235666777
Q ss_pred HHHHHhccCChhHHH
Q 046547 318 VVEGLAGVGEWKLAT 332 (343)
Q Consensus 318 li~~~~~~g~~~~a~ 332 (343)
.=.-=.+.|+-+...
T Consensus 700 wk~FEvrHGnedT~k 714 (835)
T KOG2047|consen 700 WKEFEVRHGNEDTYK 714 (835)
T ss_pred HHHHHHhcCCHHHHH
Confidence 777777888844433
No 103
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.22 E-value=0.00037 Score=66.93 Aligned_cols=215 Identities=10% Similarity=0.004 Sum_probs=113.4
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC-----------
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG----------- 166 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g----------- 166 (343)
+...+..|+. .+...+++++|.++.+...+ ..|+...+-.+...+....++.+++..+ .+.+.-
T Consensus 30 n~~a~~~Li~-~~~~~~~~deai~i~~~~l~--~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~ 104 (906)
T PRK14720 30 KFKELDDLID-AYKSENLTDEAKDICEEHLK--EHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEH 104 (906)
T ss_pred hHHHHHHHHH-HHHhcCCHHHHHHHHHHHHH--hCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHH
Confidence 3567777776 66567888888888886665 3466655444443333333344444333 221110
Q ss_pred -------CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC
Q 046547 167 -------YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239 (343)
Q Consensus 167 -------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 239 (343)
..-+...+-.+..+|-+.|+.++|..+|+++.+.. +-|..+.|.+...|... ++++|.+++...... -
T Consensus 105 ~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~-~-- 179 (906)
T PRK14720 105 ICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYR-F-- 179 (906)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH-H--
Confidence 01111344455566666677777777777777665 34566777777777777 777777777776642 0
Q ss_pred CchhHHHHHHHH---HHh--CccHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHH
Q 046547 240 PRQGMVIKVAAA---LRA--NREMWKAVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313 (343)
Q Consensus 240 p~~~~~~~li~~---~~~--~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 313 (343)
.+..-|+.+... ++. ..+.+.-.++.+.+... |..--..++-.+-..|-..++++++..+++.+.+..- -|..
T Consensus 180 i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~-~n~~ 258 (906)
T PRK14720 180 IKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDN-KNNK 258 (906)
T ss_pred HhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCC-cchh
Confidence 111112222211 111 12233333333333322 2222333444455556666677777777777666542 2444
Q ss_pred HHHHHHHHHh
Q 046547 314 VRQKVVEGLA 323 (343)
Q Consensus 314 ~~~~li~~~~ 323 (343)
...-++.+|.
T Consensus 259 a~~~l~~~y~ 268 (906)
T PRK14720 259 AREELIRFYK 268 (906)
T ss_pred hHHHHHHHHH
Confidence 5555555555
No 104
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.22 E-value=0.00027 Score=56.89 Aligned_cols=127 Identities=9% Similarity=-0.012 Sum_probs=70.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
...+..+....+.|++..|...|.+.... -++|..+|+.+--+|-+.|+++.|..-|.+..+ =..-+...+|.|.-.
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l-~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~--L~~~~p~~~nNlgms 177 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARL-APTDWEAWNLLGAALDQLGRFDEARRAYRQALE--LAPNEPSIANNLGMS 177 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhcc-CCCChhhhhHHHHHHHHccChhHHHHHHHHHHH--hccCCchhhhhHHHH
Confidence 34444555566666666666666665543 245566666666666666666666666666553 222233445555555
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
+.-.|+.+.|..++......+.. |...-..|.......|++++|.++-..
T Consensus 178 ~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 178 LLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 66666666666666665544322 333444455555566666666655443
No 105
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=0.001 Score=56.00 Aligned_cols=26 Identities=8% Similarity=0.018 Sum_probs=20.7
Q ss_pred HHHHHHhCccCcchHHHHHHHchhcC
Q 046547 36 ETVRAAVDAKDYQQIPELLGSFEEAC 61 (343)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~ 61 (343)
.+..++.+.|++++|+.++..+....
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~~~ 87 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMNKD 87 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhccC
Confidence 35566778899999999999877644
No 106
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.20 E-value=9.5e-05 Score=55.93 Aligned_cols=125 Identities=13% Similarity=0.074 Sum_probs=69.7
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh--hHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ--GYEV 282 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ 282 (343)
.|..++..+ ..++...+...++.+..+ .+.+ ....-.+...+...|++++|...|+...+....|+.. ..-.
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~--~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKD--YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHH--CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHH
Confidence 344444444 356666666666666643 2222 1222233455666677777777777766654222211 2223
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
|...+...|++++|+..++......+ ....+....+.|.+.|++++|...|++
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 45556677777777777765433322 334556666777777777777777664
No 107
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.19 E-value=2.6e-06 Score=45.48 Aligned_cols=29 Identities=34% Similarity=0.508 Sum_probs=15.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCC
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAE 201 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 201 (343)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
No 108
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.18 E-value=0.001 Score=63.01 Aligned_cols=200 Identities=14% Similarity=0.042 Sum_probs=135.3
Q ss_pred hhHHHHHHHHhhcCCChHHH-HHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLA-LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a-~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
.+.-.++.+..+..|..++| .+++.+..+ ++....... ...+++--+....+ ....++..+-.|-
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~La 93 (694)
T PRK15179 28 PTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVH-KPAAALPELLDYVR-RYPHTELFQVLVA 93 (694)
T ss_pred cHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhc-chHhhHHHHHHHHH-hccccHHHHHHHH
Confidence 44455555566666666665 344444433 222222221 12222222222222 2455678888888
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
....+.|..++|..+++...+. .|+ ......+..++.+.+++++|....++... .-+-+......+-.++.+.|+
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~~~--~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~ 169 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIHQR--FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQ 169 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHHhh--CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcc
Confidence 8889999999999999988874 455 45566778888999999999999999884 444455667788888889999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
+++|..+|++....+ .-+..++..+-..+-..|+.++|...|++..+.- .|....|+..+
T Consensus 170 ~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 229 (694)
T PRK15179 170 SEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-GDGARKLTRRL 229 (694)
T ss_pred hHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh-CcchHHHHHHH
Confidence 999999999988732 2235677778888889999999999999887652 34455555443
No 109
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=98.16 E-value=3e-06 Score=45.19 Aligned_cols=29 Identities=10% Similarity=0.171 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
+|+++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444433
No 110
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.14 E-value=0.00022 Score=62.60 Aligned_cols=111 Identities=11% Similarity=0.087 Sum_probs=48.7
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHH
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 262 (343)
..++++.|.++|+++.+.. |+. ...+...+...++-.+|++++++... ..+-|..........|.+.++.+.|.
T Consensus 181 ~t~~~~~ai~lle~L~~~~--pev--~~~LA~v~l~~~~E~~AI~ll~~aL~--~~p~d~~LL~~Qa~fLl~k~~~~lAL 254 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERD--PEV--AVLLARVYLLMNEEVEAIRLLNEALK--ENPQDSELLNLQAEFLLSKKKYELAL 254 (395)
T ss_pred hcccHHHHHHHHHHHHhcC--CcH--HHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence 3444555555555544432 222 22244444444444445444444442 22223333333344444444455555
Q ss_pred HHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHH
Q 046547 263 EMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 263 ~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~ 301 (343)
.+.+++.+ ..|+.. +|..|..+|.+.|+++.|+..++
T Consensus 255 ~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 255 EIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 55544444 233322 44444445555555555544444
No 111
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.13 E-value=0.00013 Score=64.06 Aligned_cols=117 Identities=15% Similarity=0.116 Sum_probs=87.2
Q ss_pred HhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 046547 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225 (343)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 225 (343)
++..+.++.|.++++++.+.. |+ ....+...+...++-.+|.+++.+..... +-+......-...+.+.++.+.|
T Consensus 179 l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~~~lA 253 (395)
T PF09295_consen 179 LSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKKYELA 253 (395)
T ss_pred HhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHH
Confidence 344456889999999988764 44 34457777777888888988888887542 33555566666778888999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 226 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
+.+.+++.. -.+-+..+|..|..+|.+.|+++.|+..++.+-
T Consensus 254 L~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 254 LEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999874 333344589999999999999999998888654
No 112
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.13 E-value=0.0096 Score=59.43 Aligned_cols=231 Identities=10% Similarity=-0.039 Sum_probs=115.3
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHHHHHhccCchhHHHHHHHHHHhc----CC-ccCHhhHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVP----QIRLLLSSAWLERRCQSQSVADILLEMKSI----GY-HPDCGTCNYLVS 179 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g~-~~~~~~~~~ll~ 179 (343)
.+...|+++.|...+++..+.--..+. ...+.+-..+... +++++|...+++.... |- .+...++..+-.
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~-G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~ 539 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCK-GELARALAMMQQTEQMARQHDVYHYALWSLLQQSE 539 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHH
Confidence 344567788888777776542111111 1222222233333 4577777777666432 11 111223444555
Q ss_pred HHHccCcHHHHHHHHHHhhh----CCCC--C-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCCchhHHHHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSS----AECV--P-DLESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVA 249 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~----~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li 249 (343)
.+...|+++.|...+++... .|.. + ....+..+...+...|++++|...+++...- .+.......+..+.
T Consensus 540 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 619 (903)
T PRK04841 540 ILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLA 619 (903)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHH
Confidence 66777888888777766543 2211 1 1233444455566668888887777765431 11111223344455
Q ss_pred HHHHhCccHHHHHHHHHHHHHc----CCCCchhhH--HHHHHHHHhcccHhHHHHHHHHHhHCCCCCC---HHHHHHHHH
Q 046547 250 AALRANREMWKAVEMIEFLERK----GCPIGFQGY--EVVVEGCLECREYILAGKTVMGMTERGFIPY---IKVRQKVVE 320 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~---~~~~~~li~ 320 (343)
..+...|+.+.|.+.+...... +..+..... ...+..+...|+.+.|..++........... ...+..+..
T Consensus 620 ~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 620 KISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHH
Confidence 5666778888887777766432 110000000 0112333445666666666555433211111 111334555
Q ss_pred HHhccCChhHHHHHHHHHHh
Q 046547 321 GLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 321 ~~~~~g~~~~a~~~~~~m~~ 340 (343)
++...|+.++|...+++...
T Consensus 700 ~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66667777777777666543
No 113
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.11 E-value=0.00014 Score=54.79 Aligned_cols=92 Identities=10% Similarity=-0.042 Sum_probs=53.6
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 255 (343)
.....+...|++++|...|+...... +.+...|..+..++...|++++|...|+.... --+.+...+..+-.++...
T Consensus 29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~--l~p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALM--LDASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh--cCCCCcHHHHHHHHHHHHc
Confidence 34455556666666666666655443 22455556666666666666666666666653 3334555566666666666
Q ss_pred ccHHHHHHHHHHHHH
Q 046547 256 REMWKAVEMIEFLER 270 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~ 270 (343)
|+.++|...|....+
T Consensus 106 g~~~eAi~~~~~Al~ 120 (144)
T PRK15359 106 GEPGLAREAFQTAIK 120 (144)
T ss_pred CCHHHHHHHHHHHHH
Confidence 666666666666555
No 114
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.10 E-value=0.0084 Score=59.84 Aligned_cols=302 Identities=11% Similarity=-0.028 Sum_probs=177.2
Q ss_pred HHHHhCccCcchHHHHHHHchhcCC------CCChHHH-----hhhhhhcccchHHHHHHHHhcCCCCCCCC---hhhHH
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEACQ------NPNPFSF-----LSNFPQNHRIKVIDEMLESFIPLRPRSRP---KIAYD 103 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~------~p~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~---~~~~~ 103 (343)
...+...|+++++...+......-- .|....- .......|+.+.+....+......+.... ....+
T Consensus 416 a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~ 495 (903)
T PRK04841 416 AWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATS 495 (903)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHH
Confidence 3444567889999888887643210 1111111 12223455666665555554332121111 12233
Q ss_pred HHHHHHhhcCCChHHHHHHHHHHHhcCC---Ccc--HHHHHHHHHHHHhccCchhHHHHHHHHHHh----cCCc--c-CH
Q 046547 104 YLLSYTLQSLHPLPLALAILQRTLRSGC---VPV--PQIRLLLSSAWLERRCQSQSVADILLEMKS----IGYH--P-DC 171 (343)
Q Consensus 104 ~li~~~~~~~~~~~~a~~~~~~m~~~~~---~p~--~~~~~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~--~-~~ 171 (343)
.+- ..+...|+++.|...+.+.....- .+. ..++..+-..+... |+++.|...+++... .|.. + ..
T Consensus 496 ~lg-~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~-G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 573 (903)
T PRK04841 496 VLG-EVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ-GFLQAAYETQEKAFQLIEEQHLEQLPMHE 573 (903)
T ss_pred HHH-HHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence 333 355667999999999998764211 111 12333333344555 479999988777643 2321 1 12
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCCchhH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVP--DLESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMPRQGM 244 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~ 244 (343)
..+..+...+...|++++|...+++..... ..+ ....+..+...+...|+.++|.+.++....- .+..+....
T Consensus 574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~ 653 (903)
T PRK04841 574 FLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIA 653 (903)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhh
Confidence 334455566777899999999988875421 112 2344555666788899999999999887531 111111101
Q ss_pred --HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCCC-HHH
Q 046547 245 --VIKVAAALRANREMWKAVEMIEFLERKGCPIGF---QGYEVVVEGCLECREYILAGKTVMGMTER----GFIPY-IKV 314 (343)
Q Consensus 245 --~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~ 314 (343)
-...+..+...|+.+.|...+............ ..+..+...+...|++++|...+++.... |..++ ..+
T Consensus 654 ~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~ 733 (903)
T PRK04841 654 NADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRN 733 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHH
Confidence 011234456688999999998775432111111 11345566788899999999999987653 33332 345
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 315 RQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
...+..++.+.|+.++|...+.+..++
T Consensus 734 ~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 734 LILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 666777889999999999999987764
No 115
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.09 E-value=0.00023 Score=53.66 Aligned_cols=109 Identities=14% Similarity=-0.088 Sum_probs=83.8
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.+|++..+. .|+. +..+..++...|++++|...|+.... --+.+...|..+..++.+.|++++|...|+...+.
T Consensus 14 ~~~~~al~~--~p~~--~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l 87 (144)
T PRK15359 14 DILKQLLSV--DPET--VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALML 87 (144)
T ss_pred HHHHHHHHc--CHHH--HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 345555543 3443 45567788889999999999999874 33457788888999999999999999999998874
Q ss_pred CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 272 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
. +.+...+..+-.++...|++++|...|.......
T Consensus 88 ~-p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 88 D-ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred C-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 3 2356677788888889999999999999887653
No 116
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.09 E-value=0.0071 Score=54.45 Aligned_cols=29 Identities=10% Similarity=0.172 Sum_probs=22.9
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcC
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEAC 61 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 61 (343)
+...-.+.+.+.+++++|+++++.+.+.+
T Consensus 112 ll~L~AQvlYrl~~ydealdiY~~L~kn~ 140 (652)
T KOG2376|consen 112 LLELRAQVLYRLERYDEALDIYQHLAKNN 140 (652)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555677889999999999999986554
No 117
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.08 E-value=0.00019 Score=53.51 Aligned_cols=116 Identities=15% Similarity=0.005 Sum_probs=82.0
Q ss_pred HHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 193 VLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 193 ~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.++..... .| +......+...+...|++++|.+.|+.... ..+.+...+..+...+.+.|++++|...++...+.
T Consensus 5 ~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLGL--DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHcC--ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34444443 23 334456677778888899999998888875 33446777888888888888899999888887764
Q ss_pred CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHH
Q 046547 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVR 315 (343)
Q Consensus 272 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~ 315 (343)
+ +.+...+..+-..|...|++++|.+.|+...+.. |+...+
T Consensus 81 ~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~ 121 (135)
T TIGR02552 81 D-PDDPRPYFHAAECLLALGEPESALKALDLAIEIC--GENPEY 121 (135)
T ss_pred C-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc--cccchH
Confidence 3 3345566666777888899999999888877653 544443
No 118
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.07 E-value=0.00037 Score=55.63 Aligned_cols=126 Identities=10% Similarity=0.016 Sum_probs=97.3
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH-hcCCC--hhHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM-STARK--TNDAVE 227 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-~~~~~--~~~a~~ 227 (343)
+.+++...++...+.. +.|...|..+...|...|++++|...|++..+... -+...+..+..++ ...|+ .++|.+
T Consensus 54 ~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P-~~~~~~~~lA~aL~~~~g~~~~~~A~~ 131 (198)
T PRK10370 54 TPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG-ENAELYAALATVLYYQAGQHMTPQTRE 131 (198)
T ss_pred hHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence 4567777777766543 56778899999999999999999999999887652 3567777777764 67777 489999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHH
Q 046547 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE 281 (343)
Q Consensus 228 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 281 (343)
++++..+ .-+-+...+..+...+.+.|++++|...|+++.+. ..|+..-+.
T Consensus 132 ~l~~al~--~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l-~~~~~~r~~ 182 (198)
T PRK10370 132 MIDKALA--LDANEVTALMLLASDAFMQADYAQAIELWQKVLDL-NSPRVNRTQ 182 (198)
T ss_pred HHHHHHH--hCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCccHHH
Confidence 9999985 34446778888999999999999999999999875 344544443
No 119
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0038 Score=50.27 Aligned_cols=187 Identities=13% Similarity=0.037 Sum_probs=127.0
Q ss_pred CCChHHHHHHHHHHH---hcC-CCccHHHH-HHHHHHHHhccCchhHHHHHHHHHHhcCCccCH-hhHHHHHHHHHccCc
Q 046547 113 LHPLPLALAILQRTL---RSG-CVPVPQIR-LLLSSAWLERRCQSQSVADILLEMKSIGYHPDC-GTCNYLVSSLCAIDQ 186 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~---~~~-~~p~~~~~-~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~ll~~~~~~~~ 186 (343)
..+.++..+++.++. ..| ..|+..+. -.++-+....+ ..+.|...++.+.+. + |.+ .+-..--.-+-..|+
T Consensus 25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~-~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTG-RDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhc-chHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhc
Confidence 356788888888775 334 55666653 22333334555 467889999888765 2 332 221111112344688
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
+++|.++++.+.+.. +.|..+|---+-..-..|+.-+|++-+.+..+ .+..|...|.-+...|...|++++|.-.++
T Consensus 102 ~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClE 178 (289)
T KOG3060|consen 102 YKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLE 178 (289)
T ss_pred hhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHH
Confidence 899999999988766 55677777667677777888889988888885 788899999999999999999999999999
Q ss_pred HHHHcCCCCchhh-HHHHHHHHH---hcccHhHHHHHHHHHhHCC
Q 046547 267 FLERKGCPIGFQG-YEVVVEGCL---ECREYILAGKTVMGMTERG 307 (343)
Q Consensus 267 ~m~~~g~~p~~~~-~~~li~~~~---~~g~~~~a~~~~~~m~~~g 307 (343)
++.- +.|.... +..+-+.+- ...+.+.|.++|.+..+..
T Consensus 179 E~ll--~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 179 ELLL--IQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 9886 4554443 334444422 2335667888888776643
No 120
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=98.06 E-value=8.6e-05 Score=58.31 Aligned_cols=89 Identities=17% Similarity=0.172 Sum_probs=48.7
Q ss_pred ccHHHHHHHHHHHHhc----cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc----------------CcHHHHHH
Q 046547 133 PVPQIRLLLSSAWLER----RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI----------------DQLVEAAK 192 (343)
Q Consensus 133 p~~~~~~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~----------------~~~~~a~~ 192 (343)
.|-.+|..++..|.+. .|.++-....++.|.+-|+.-|..+|+.||+.+=+. .+-+-|++
T Consensus 45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~ 124 (228)
T PF06239_consen 45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAID 124 (228)
T ss_pred ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHH
Confidence 3445555555555433 233444555555666666666666666665555431 12344566
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCC
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARK 221 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 221 (343)
++++|...|+.||..|+..+++.+++.+.
T Consensus 125 lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 125 LLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 66666666666666666666666655443
No 121
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.05 E-value=0.0035 Score=51.72 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=111.0
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH--------------------
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC-------------------- 171 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~-------------------- 171 (343)
+.|+++.|.+-|+...+.+---....||..+.-| ++ ++++.|++...++.++|++-.+
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~-~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SS-RQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hh-hhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 6788888888888877654444456778777554 43 3678888888888888875321
Q ss_pred --------hhHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch
Q 046547 172 --------GTCNYLVSSLCAIDQLVEAAKVLKGMSSA-ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242 (343)
Q Consensus 172 --------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 242 (343)
..+|.=...+.+.|+++.|.+.+-+|--+ ....|.+|...+.-.- ..+++.+..+-+..+.+...+ ..
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nPf--P~ 310 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNPF--PP 310 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCCC--Ch
Confidence 12222223345667888888777777532 2445666655443221 224444555555555532122 33
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.||..++-.||++.-++.|-+++.+--..-. -.+...|+.|=..-.-.-..++|++-++.+..
T Consensus 311 ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~ 374 (459)
T KOG4340|consen 311 ETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAG 374 (459)
T ss_pred HHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 5788888889999988888888775322111 12344454332222334456777776665543
No 122
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.05 E-value=0.0003 Score=52.38 Aligned_cols=104 Identities=12% Similarity=-0.001 Sum_probs=64.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
.....+...+...|++++|.+.|+.....+ +.+...+..+...+...|++++|..+++.... ..+.+..++..+-..
T Consensus 18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~ 94 (135)
T TIGR02552 18 EQIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAA--LDPDDPRPYFHAAEC 94 (135)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 334455556666777777777777766543 23555666666667777777777777776653 234445556666666
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
+...|++++|...|+...+ ..|+...+
T Consensus 95 ~~~~g~~~~A~~~~~~al~--~~p~~~~~ 121 (135)
T TIGR02552 95 LLALGEPESALKALDLAIE--ICGENPEY 121 (135)
T ss_pred HHHcCCHHHHHHHHHHHHH--hccccchH
Confidence 7777777777777776665 33444443
No 123
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.04 E-value=0.00076 Score=60.21 Aligned_cols=219 Identities=12% Similarity=0.045 Sum_probs=147.2
Q ss_pred cCCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCcc-CHhhHHHHHHHHHccCcHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-DCGTCNYLVSSLCAIDQLVE 189 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~ 189 (343)
+.|++.+|.=.|+..++.. | +...|..|-....... +-..|+..+.+..+. .| +....-.|--.|...|.-..
T Consensus 297 ~nG~L~~A~LafEAAVkqd--P~haeAW~~LG~~qaENE-~E~~ai~AL~rcl~L--dP~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 297 KNGDLSEAALAFEAAVKQD--PQHAEAWQKLGITQAENE-NEQNAISALRRCLEL--DPTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred hcCCchHHHHHHHHHHhhC--hHHHHHHHHhhhHhhhcc-chHHHHHHHHHHHhc--CCccHHHHHHHHHHHhhhhhHHH
Confidence 5688888888888887754 4 3444555444444443 345677777777664 44 34556666667888888888
Q ss_pred HHHHHHHhhhCCC-----CC---CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHH
Q 046547 190 AAKVLKGMSSAEC-----VP---DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 190 a~~~~~~m~~~~~-----~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a 261 (343)
|++.++.=..... .+ +...-+. ..+.....+.+..++|-++....+..+|..++..|=-.|--.|++++|
T Consensus 372 Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra 449 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA 449 (579)
T ss_pred HHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence 8888877644321 00 1000000 233333445566677777765456556777777777778888999999
Q ss_pred HHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 262 VEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 262 ~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
.+.|+.... ++|+ ...||.|-..++...+.++|+..|.+.++ ++|+ +++...|.-+|...|.+++|.+.|-...
T Consensus 450 iDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 450 VDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 999998887 6675 45889999999999999999999998876 4564 3344456668899999999998887765
Q ss_pred hh
Q 046547 340 EL 341 (343)
Q Consensus 340 ~~ 341 (343)
.+
T Consensus 526 ~m 527 (579)
T KOG1125|consen 526 SM 527 (579)
T ss_pred Hh
Confidence 54
No 124
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.02 E-value=0.01 Score=54.04 Aligned_cols=100 Identities=15% Similarity=0.103 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhcccHhHHHHHHHHHhHC----------CCC
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIG---FQGYEVVVEGCLECREYILAGKTVMGMTER----------GFI 309 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----------g~~ 309 (343)
..|..+.+.|-..|+++.|..+|++..+-..+-- ..+|..-...=.+..+++.|+++++..... |-.
T Consensus 388 ~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~ 467 (835)
T KOG2047|consen 388 TLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSE 467 (835)
T ss_pred hHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCC
Confidence 3466777777788888888888887665332211 123333334444566677777777655321 111
Q ss_pred C-------CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 310 P-------YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 310 p-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
| +...|...++---..|-++....+|+++.+|+
T Consensus 468 pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLr 507 (835)
T KOG2047|consen 468 PVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLR 507 (835)
T ss_pred cHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHh
Confidence 2 34456666666666788888888888888765
No 125
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.00 E-value=0.005 Score=49.62 Aligned_cols=185 Identities=14% Similarity=0.054 Sum_probs=134.7
Q ss_pred CchhHHHHHHHHHHh---cC-CccCHh-hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH-hhHHHHHHHHhcCCChh
Q 046547 150 CQSQSVADILLEMKS---IG-YHPDCG-TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL-ESYSIVIGAMSTARKTN 223 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~---~g-~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~ 223 (343)
+..++..+++.++.. .| ..++.. .|.-++-+....|+.+.|..+++.+...- |.+ .+--.-.--+-..|+++
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~~~ 103 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGNYK 103 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhchh
Confidence 346778877777742 34 455553 46677777888999999999999988764 332 22111111234568999
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 224 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
+|+++++.+.++ -+.|..+|.-=+...-..|+.-+|++-+.+..+. +..|...|.-+-..|...|++++|.-.++++
T Consensus 104 ~A~e~y~~lL~d--dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ 180 (289)
T KOG3060|consen 104 EAIEYYESLLED--DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL 180 (289)
T ss_pred hHHHHHHHHhcc--CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence 999999999964 3667778877777777788888888888887774 6679999999999999999999999999998
Q ss_pred hHCCCCC-CHHHHHHHHHHHhc---cCChhHHHHHHHHHHhh
Q 046547 304 TERGFIP-YIKVRQKVVEGLAG---VGEWKLATVVRQRFAEL 341 (343)
Q Consensus 304 ~~~g~~p-~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~ 341 (343)
.-. .| ++..+..+-+.+.- ..+.+.|.++|++-.++
T Consensus 181 ll~--~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 181 LLI--QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKL 220 (289)
T ss_pred HHc--CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence 754 45 44555555554433 33677788888877665
No 126
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.99 E-value=0.0039 Score=55.85 Aligned_cols=253 Identities=13% Similarity=0.061 Sum_probs=168.6
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhc
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLER 148 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~ 148 (343)
-..+.+.|.+..+--+++..+.-.|. +...|--|=. .....++=..|+..+.+..+ +.|+... .-.|--.|...
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~-~qaENE~E~~ai~AL~rcl~--LdP~NleaLmaLAVSytNe 366 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGI-TQAENENEQNAISALRRCLE--LDPTNLEALMALAVSYTNE 366 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhChH--HHHHHHHhhh-HhhhccchHHHHHHHHHHHh--cCCccHHHHHHHHHHHhhh
Confidence 44455666666666666665543332 4555554442 34455666789999999888 4465543 34444456666
Q ss_pred cCchhHHHHHHHHHHhcCCcc--------CHhhHHHHHHHHHccCcHHHHHHHHHHhh-hCCCCCCHhhHHHHHHHHhcC
Q 046547 149 RCQSQSVADILLEMKSIGYHP--------DCGTCNYLVSSLCAIDQLVEAAKVLKGMS-SAECVPDLESYSIVIGAMSTA 219 (343)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~~--------~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~ 219 (343)
+- -..|.+.++.......+- +...-+. ..+.....+....++|-++. ..+..+|..+++.|--.|--.
T Consensus 367 g~-q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls 443 (579)
T KOG1125|consen 367 GL-QNQALKMLDKWIRNKPKYVHLVSAGENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLS 443 (579)
T ss_pred hh-HHHHHHHHHHHHHhCccchhccccCccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcc
Confidence 64 356888887775432110 0000000 22333344556667776665 445557888888888889999
Q ss_pred CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcccHhHHH
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAG 297 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~ 297 (343)
|++++|.+.|+.... --+-|..+||-|-..++...+.++|+.-|++..+ ++|+.+ =|| |--+|...|.+++|.
T Consensus 444 ~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyN-lgIS~mNlG~ykEA~ 518 (579)
T KOG1125|consen 444 GEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYN-LGISCMNLGAYKEAV 518 (579)
T ss_pred hHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehh-hhhhhhhhhhHHHHH
Confidence 999999999999984 3445778899999999999999999999999988 667643 355 444799999999999
Q ss_pred HHHHHHhH---C------CCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 046547 298 KTVMGMTE---R------GFIPYIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 298 ~~~~~m~~---~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
+.|-..+. . +..++...|.+|=.++.-.++.|.+.+..
T Consensus 519 ~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~ 565 (579)
T KOG1125|consen 519 KHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAA 565 (579)
T ss_pred HHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhc
Confidence 98876543 2 11234567888877888888887665543
No 127
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=97.98 E-value=0.0018 Score=52.25 Aligned_cols=156 Identities=13% Similarity=-0.057 Sum_probs=104.7
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
..+-..+...|+-+....+....... .+-|............+.|++..|...+++... .-++|..+|+.+--+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44445566667766666666554322 223444555577777777888888888877773 667777778888878888
Q ss_pred CccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 255 NREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
.|+++.|..-|.+..+. .| +...+|.|.-.|.-.|+.+.|..++......+- -|..+-..+.......|++++|..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L--~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~-ad~~v~~NLAl~~~~~g~~~~A~~ 223 (257)
T COG5010 147 LGRFDEARRAYRQALEL--APNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA-ADSRVRQNLALVVGLQGDFREAED 223 (257)
T ss_pred ccChhHHHHHHHHHHHh--ccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC-CchHHHHHHHHHHhhcCChHHHHh
Confidence 88888887777777663 23 334566666667777778888887777766542 255666677777777778777776
Q ss_pred HHH
Q 046547 334 VRQ 336 (343)
Q Consensus 334 ~~~ 336 (343)
+-.
T Consensus 224 i~~ 226 (257)
T COG5010 224 IAV 226 (257)
T ss_pred hcc
Confidence 543
No 128
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.97 E-value=0.0061 Score=52.30 Aligned_cols=111 Identities=22% Similarity=0.210 Sum_probs=84.8
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 285 (343)
..+.+..|.-+...|+...|.++-.+. ++ ||...|-..|.+++..++|++-.++... . -++.-|..++.
T Consensus 177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s----k--KsPIGyepFv~ 245 (319)
T PF04840_consen 177 GLSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS----K--KSPIGYEPFVE 245 (319)
T ss_pred cCCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC----C--CCCCChHHHHH
Confidence 345566677778889888887776554 33 8999999999999999999988776442 1 23488999999
Q ss_pred HHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
.|.+.|+..+|..+...+ | +..-+..|.+.|++.+|.+.--+
T Consensus 246 ~~~~~~~~~eA~~yI~k~------~----~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 246 ACLKYGNKKEASKYIPKI------P----DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHCCCHHHHHHHHHhC------C----hHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999999988761 1 25557788888998888776443
No 129
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.97 E-value=0.011 Score=52.17 Aligned_cols=240 Identities=13% Similarity=0.031 Sum_probs=155.4
Q ss_pred HHHHhCcc-CcchHHHHHHHchh---cCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCC-CCCChhhHHHHHHHHhhc
Q 046547 38 VRAAVDAK-DYQQIPELLGSFEE---ACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRP-RSRPKIAYDYLLSYTLQS 112 (343)
Q Consensus 38 i~~~~~~~-~~~~a~~~~~~m~~---~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~p~~~~~~~li~~~~~~ 112 (343)
|..+.+.| +.....+.|+++.. .+-.|..+...+=+- ..|+..+++-.+.+..... ..|+...+...+...+ .
T Consensus 209 i~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl~THPlp-~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~-~ 286 (484)
T COG4783 209 ITTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYLLTHPLP-EERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY-E 286 (484)
T ss_pred HHHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHHhcCCCc-hhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh-c
Confidence 45555665 55566777777662 333333332222111 1233334433333333222 4566777777775322 2
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
...-..+..+ ..+... -.-...-|..-+..| ..+ +.++|+..+..+... .+-|+.........+.+.++.++|.+
T Consensus 287 ~~~~~~~~~~-~~~~~~-~~~~aa~YG~A~~~~-~~~-~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e 361 (484)
T COG4783 287 ALPNQQAADL-LAKRSK-RGGLAAQYGRALQTY-LAG-QYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIE 361 (484)
T ss_pred cccccchHHH-HHHHhC-ccchHHHHHHHHHHH-Hhc-ccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHH
Confidence 2222222222 222222 123344567777654 444 689999999998775 23445555566778999999999999
Q ss_pred HHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 193 VLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 193 ~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.++++... .|+ ....-.+-.++.+.|++.+|+.+++.... ..+-|+..|..|.++|...|+..++..-..+
T Consensus 362 ~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE---- 433 (484)
T COG4783 362 RLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--NDPEDPNGWDLLAQAYAELGNRAEALLARAE---- 433 (484)
T ss_pred HHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCCCchHHHHHHHHHHHhCchHHHHHHHHH----
Confidence 99999875 455 44455678899999999999999999984 6777889999999999999998887765543
Q ss_pred CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 272 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+|...|+++.|...+....+.
T Consensus 434 --------------~~~~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 434 --------------GYALAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred --------------HHHhCCCHHHHHHHHHHHHHh
Confidence 456788889999888887765
No 130
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=0.013 Score=52.92 Aligned_cols=56 Identities=11% Similarity=0.001 Sum_probs=31.0
Q ss_pred HHHHHHhcccHhHHHHHHH--------HHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 283 VVEGCLECREYILAGKTVM--------GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~--------~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+++.....|+++.|.+++. .+.+.+..| .+...++.-+.+.++.+.|..++.+...
T Consensus 382 ~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~ 445 (652)
T KOG2376|consen 382 RAQLKISQGNPEVALEILSLFLESWKSSILEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIK 445 (652)
T ss_pred HHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHH
Confidence 3444556667777766666 444444444 3334455556666666666666655443
No 131
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=97.94 E-value=0.00083 Score=63.66 Aligned_cols=143 Identities=11% Similarity=0.012 Sum_probs=89.9
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
...+-.|-. .....|..++|..+++...+ +.||...........++..+.+++|...+++..+.. +-+......+-
T Consensus 86 ~~~~~~La~-i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~~a 161 (694)
T PRK15179 86 ELFQVLVAR-ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILLEA 161 (694)
T ss_pred HHHHHHHHH-HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHHHH
Confidence 444444443 56667778888888887777 457665544433333333445778888777777642 22344555566
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
.++.+.|++++|..+|++....+ +-+..++..+-.++-..|+.++|...|+.... ...|...-|+..
T Consensus 162 ~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~--~~~~~~~~~~~~ 228 (694)
T PRK15179 162 KSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLD--AIGDGARKLTRR 228 (694)
T ss_pred HHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hhCcchHHHHHH
Confidence 66777788888888888877632 22356677777777777888888888877764 333444444443
No 132
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.94 E-value=0.00076 Score=62.03 Aligned_cols=132 Identities=13% Similarity=0.083 Sum_probs=67.3
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHH
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 262 (343)
...+|.+|+.+++.++.... -+.-|..+...|...|+++.|.++|-+.- .++--|..|.++|+|+.|.
T Consensus 744 ~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~----------~~~dai~my~k~~kw~da~ 811 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD----------LFKDAIDMYGKAGKWEDAF 811 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc----------hhHHHHHHHhccccHHHHH
Confidence 33445555555555544322 23345555556666666666666654421 2344455666666666666
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 263 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
++-++.. |-......|-+-..-.-+.|++.+|.+++-.. | .|+ ..|..|-+.|..|..+++.++
T Consensus 812 kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqlyiti---~-~p~-----~aiqmydk~~~~ddmirlv~k 875 (1636)
T KOG3616|consen 812 KLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLYITI---G-EPD-----KAIQMYDKHGLDDDMIRLVEK 875 (1636)
T ss_pred HHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhheeEEc---c-Cch-----HHHHHHHhhCcchHHHHHHHH
Confidence 6554432 22223334444444455566666666655322 2 232 235666677777766666553
No 133
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00065 Score=51.34 Aligned_cols=128 Identities=10% Similarity=0.028 Sum_probs=75.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch--hHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP--DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ--GMVIK 247 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~--~~~~~ 247 (343)
..|..++..+ ..++...+...++.+.+....- .....-.+...+...|++++|...|+....+ ...|+. ...-.
T Consensus 13 ~~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~ 90 (145)
T PF09976_consen 13 ALYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLR 90 (145)
T ss_pred HHHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHH
Confidence 3455555555 3677777777777777643111 0122223446677778888888888887763 422221 23344
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
|...+...|++++|+..++....... ....+...-..|.+.|++++|...|+..
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~~~~~~--~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQIPDEAF--KALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhccCcch--HHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 56667777888888887765333222 2334445556677888888888777653
No 134
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.92 E-value=0.0092 Score=50.51 Aligned_cols=196 Identities=11% Similarity=0.024 Sum_probs=112.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhccC---chhHHHHHHHHHHhcCCccCH-hhHHH
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSA-WLERRC---QSQSVADILLEMKSIGYHPDC-GTCNY 176 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~---~~~~a~~~~~~m~~~g~~~~~-~~~~~ 176 (343)
.|.+| ++.+.+++.+|..+..++.- ..|-......+..+ +.+..+ ..+-|.+.|+..-+.+..-|. .--.+
T Consensus 289 lNL~i--YyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQs 364 (557)
T KOG3785|consen 289 LNLII--YYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQS 364 (557)
T ss_pred hhhee--eecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHH
Confidence 34444 45566888888777766532 23333333333221 222211 233455555555455444332 22344
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHH-HHHHHHHHhC
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV-IKVAAALRAN 255 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~ 255 (343)
+-+++.-..++++++-.+..++..-..-|..-|| +..+++..|+..+|.++|-.+.. ..++ |..+| ..|.++|.++
T Consensus 365 mAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~-~~ik-n~~~Y~s~LArCyi~n 441 (557)
T KOG3785|consen 365 MASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISG-PEIK-NKILYKSMLARCYIRN 441 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcC-hhhh-hhHHHHHHHHHHHHhc
Confidence 5556666677888888777777665555555554 66778888888888888877764 2333 33444 5566777888
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhhHHHH-HHHHHhcccHhHHHHHHHHHhHCC
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQGYEVV-VEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l-i~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
++++.|++++-.+.. +.+..+.-.+ ..-|-+.+++--|.+.|+++...+
T Consensus 442 kkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 442 KKPQLAWDMMLKTNT---PSERFSLLQLIANDCYKANEFYYAAKAFDELEILD 491 (557)
T ss_pred CCchHHHHHHHhcCC---chhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccC
Confidence 888888776654432 2223333223 344777777777777777665544
No 135
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.92 E-value=0.00011 Score=57.79 Aligned_cols=88 Identities=17% Similarity=0.195 Sum_probs=59.8
Q ss_pred ccCHhhHHHHHHHHHc-----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC----------------ChhHHH
Q 046547 168 HPDCGTCNYLVSSLCA-----IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR----------------KTNDAV 226 (343)
Q Consensus 168 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 226 (343)
..|..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.||+.+=+.. +-+-|+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i 123 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAI 123 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHH
Confidence 4567788888888765 4678888888899999999999999999998875522 123455
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
+++++|+. +|+.||..|+..+++.+.+.+
T Consensus 124 ~lL~qME~-~gV~Pd~Et~~~ll~iFG~~s 152 (228)
T PF06239_consen 124 DLLEQMEN-NGVMPDKETEQMLLNIFGRKS 152 (228)
T ss_pred HHHHHHHH-cCCCCcHHHHHHHHHHhcccc
Confidence 55555554 355555555555555554443
No 136
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.91 E-value=0.01 Score=56.96 Aligned_cols=264 Identities=14% Similarity=0.051 Sum_probs=141.4
Q ss_pred cCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH-----hhhh--hhcccchHHHHHHHHhcCCCCCCCC
Q 046547 26 RSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF-----LSNF--PQNHRIKVIDEMLESFIPLRPRSRP 98 (343)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~~~~~~p~ 98 (343)
+...+.+......+++...+-+.+-++++++..- .|++++= +.++ .-......+-+-++.+... +.|+
T Consensus 979 ~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL---~~S~Fse~~nLQnLLiLtAikad~trVm~YI~rLdny--Da~~ 1053 (1666)
T KOG0985|consen 979 PETQDPEEVSVTVKAFMTADLPNELIELLEKIVL---DNSVFSENRNLQNLLILTAIKADRTRVMEYINRLDNY--DAPD 1053 (1666)
T ss_pred CccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhc---CCcccccchhhhhhHHHHHhhcChHHHHHHHHHhccC--Cchh
Confidence 3344666677778888888888888888877652 2222221 1111 1111122333333333321 1122
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
.-+..| ..+-+++|..+|++.. .+....+.||.-. +..+.|.+.-+... .+..|..+-
T Consensus 1054 --ia~iai-----~~~LyEEAF~ifkkf~-----~n~~A~~VLie~i----~~ldRA~efAe~~n------~p~vWsqla 1111 (1666)
T KOG0985|consen 1054 --IAEIAI-----ENQLYEEAFAIFKKFD-----MNVSAIQVLIENI----GSLDRAYEFAERCN------EPAVWSQLA 1111 (1666)
T ss_pred --HHHHHh-----hhhHHHHHHHHHHHhc-----ccHHHHHHHHHHh----hhHHHHHHHHHhhC------ChHHHHHHH
Confidence 222222 3355777777777643 2344445555432 23555555544432 245677777
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
.+-.+.|.+.+|.+-|-+. -|...|..+++...+.|.+++-.+++....++ .-.|... +.||-+|++.++.
T Consensus 1112 kAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl 1182 (1666)
T KOG0985|consen 1112 KAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRL 1182 (1666)
T ss_pred HHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchH
Confidence 7777777777777655432 25566777888888888888888777766654 5555543 4777788887777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC--------------------CCCCCHHHHHHH
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER--------------------GFIPYIKVRQKV 318 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------------g~~p~~~~~~~l 318 (343)
.+..+++. -||......+-+-|...|.++.|.-+|...... .-.-+..||.-+
T Consensus 1183 ~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~V 1255 (1666)
T KOG0985|consen 1183 TELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEV 1255 (1666)
T ss_pred HHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHH
Confidence 66554432 244444444444444444444444333311100 001245566666
Q ss_pred HHHHhccCChhHHH
Q 046547 319 VEGLAGVGEWKLAT 332 (343)
Q Consensus 319 i~~~~~~g~~~~a~ 332 (343)
-.+|...+.+.-|.
T Consensus 1256 cfaCvd~~EFrlAQ 1269 (1666)
T KOG0985|consen 1256 CFACVDKEEFRLAQ 1269 (1666)
T ss_pred HHHHhchhhhhHHH
Confidence 66666666665543
No 137
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.88 E-value=0.012 Score=56.86 Aligned_cols=242 Identities=8% Similarity=0.027 Sum_probs=129.3
Q ss_pred hhhhhccccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH--h--hhhhhcccchHHHHHHHHhcCCC
Q 046547 18 CLLQFSSLRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF--L--SNFPQNHRIKVIDEMLESFIPLR 93 (343)
Q Consensus 18 ~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~ 93 (343)
+.+..-..-+......+..++..+-..+++++|.++.+...+. .|+...+ . .++...++.+.+.-+
T Consensus 18 ~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-------- 87 (906)
T PRK14720 18 WTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-------- 87 (906)
T ss_pred hhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh--------
Confidence 3333333444557788999999999999999999999955543 5555443 1 122222221111111
Q ss_pred CCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh
Q 046547 94 PRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173 (343)
Q Consensus 94 ~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 173 (343)
.++. ......++..+..+.+.|.+.+ -+...+-.+..+|-+. ++.+++..++++..+.. +-|+.+
T Consensus 88 ----------~~l~-~~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~-g~~~ka~~~yer~L~~D-~~n~~a 152 (906)
T PRK14720 88 ----------NLID-SFSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKL-NENKKLKGVWERLVKAD-RDNPEI 152 (906)
T ss_pred ----------hhhh-hcccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHc-CChHHHHHHHHHHHhcC-cccHHH
Confidence 2332 3333344444444444444432 2222344444444343 34666777777666654 445566
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH-----hcCCChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM-----STARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
.|.+--.|... ++++|.+++.+....-+ +..-|+.+...+ ....+++.-.++.+.+....|..--..++-.+
T Consensus 153 LNn~AY~~ae~-dL~KA~~m~~KAV~~~i--~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l 229 (906)
T PRK14720 153 VKKLATSYEEE-DKEKAITYLKKAIYRFI--KKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHHHHHh-hHHHHHHHHHHHHHHHH--hhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHH
Confidence 66666666666 66666666665544311 111111111110 11123333444444444322333344566667
Q ss_pred HHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
-..|-..++|+++..+++...+..-. |.....-++..|.
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 78888889999999999999885322 4445666666665
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.86 E-value=0.0029 Score=58.20 Aligned_cols=210 Identities=14% Similarity=0.011 Sum_probs=149.4
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
...|.-+|- ||+..|+..+|..+..+-.+ -+||+..|..+....-.. .-+++|.++.+....+ .-..+-
T Consensus 424 lemw~~vi~-CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~-s~yEkawElsn~~sar-------A~r~~~ 492 (777)
T KOG1128|consen 424 LEMWDPVIL-CYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDP-SLYEKAWELSNYISAR-------AQRSLA 492 (777)
T ss_pred HHHHHHHHH-HHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccCh-HHHHHHHHHhhhhhHH-------HHHhhc
Confidence 356777774 88888999999999888777 358888888887764433 3477888887765332 112222
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
......++++++.+.|+.-.+.. +.-..+|-..-.+..+.++++.|.+.|..... +-+-+...||.+-.+|.+.++-
T Consensus 493 ~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~av~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k 569 (777)
T KOG1128|consen 493 LLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQAAVKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKK 569 (777)
T ss_pred cccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHHHHHHHHHHhh--cCCCchhhhhhhhHHHHHHhhh
Confidence 22334789999999998766543 22456777777788889999999999999873 4444567799999999999999
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC-CCCHHHHHHHHHHHh
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF-IPYIKVRQKVVEGLA 323 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~ 323 (343)
.+|...+.+..+-+. -+-..|..-+....+.|.+++|.+.+.++.+... .-|..+...++....
T Consensus 570 ~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~ 634 (777)
T KOG1128|consen 570 KRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVL 634 (777)
T ss_pred HHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHH
Confidence 999999999887663 3344565666677899999999999998765411 124444444444433
No 139
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.86 E-value=0.00037 Score=47.55 Aligned_cols=92 Identities=13% Similarity=0.011 Sum_probs=43.4
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 326 (343)
.+...+...|++++|...++...+.. +.+...+..+...+...|++++|.+.++...+.. +.+..++..+...+...|
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHH
Confidence 34444444555555555555544321 1112333444444555555555555555544432 122234445555555555
Q ss_pred ChhHHHHHHHHHHh
Q 046547 327 EWKLATVVRQRFAE 340 (343)
Q Consensus 327 ~~~~a~~~~~~m~~ 340 (343)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 55555555555443
No 140
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.83 E-value=0.004 Score=57.55 Aligned_cols=45 Identities=9% Similarity=-0.011 Sum_probs=22.9
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 334 (343)
..+-.-|-..|+...|..-|-+.. -|..-++.|-.++.|++|.++
T Consensus 886 ~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayri 930 (1636)
T KOG3616|consen 886 KHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYRI 930 (1636)
T ss_pred HHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHHH
Confidence 334444555555555555443321 244455556666666666554
No 141
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.79 E-value=0.0056 Score=53.90 Aligned_cols=119 Identities=9% Similarity=-0.051 Sum_probs=74.9
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHh
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYI 294 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~ 294 (343)
+...|+.++|+..++.+.. ..+-|..........+.+.++.++|.+.++.+.. ..|+.. ..-.+-.+|.+.|++.
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~--l~P~~~~l~~~~a~all~~g~~~ 391 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALA--LDPNSPLLQLNLAQALLKGGKPQ 391 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh--cCCCccHHHHHHHHHHHhcCChH
Confidence 3455677777777777663 4444555556666667777777777777777765 345532 2334455677777777
Q ss_pred HHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 295 LAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 295 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
+|.++++...... +-|+..|..|-++|...|+..+|..-..+.-
T Consensus 392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7777777665543 4466677777777777776666666555443
No 142
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.74 E-value=0.00078 Score=56.97 Aligned_cols=145 Identities=10% Similarity=0.013 Sum_probs=104.0
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCC-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
.+|..+++..-+.+..+.|.++|.+..+.+ +........+++. +...++.+.|.++|+...+ .+..+...|...+.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E-~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALME-YYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHH-HHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 468888899999999999999999998653 3344444444443 3335677779999999985 56667788889999
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGF---QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 322 (343)
.+.+.++.+.|..+|++.... +.++. ..|...++.=.+.|+.+.+.++.+++.+. .|+......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~--~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL--FPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH--TTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--hhhhhHHHHHHHHh
Confidence 999999999999999998865 33333 48888888888899999999999888764 34444444444444
No 143
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.73 E-value=0.049 Score=52.55 Aligned_cols=233 Identities=10% Similarity=0.088 Sum_probs=145.9
Q ss_pred chHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcC--CCccHHHHHHHHHHHHhccCchhHHH
Q 046547 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG--CVPVPQIRLLLSSAWLERRCQSQSVA 156 (343)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~~~~~~~a~ 156 (343)
..+.+++++....- ..|....+..+. ++...+-..+-++++++..-.. +.-+...-|.||-.-.+. +...+.
T Consensus 967 RqLiDqVv~tal~E---~~dPe~vS~tVk-AfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika--d~trVm 1040 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPE---TQDPEEVSVTVK-AFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA--DRTRVM 1040 (1666)
T ss_pred HHHHHHHHHhcCCc---cCChHHHHHHHH-HHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc--ChHHHH
Confidence 45566666665432 224455555665 5666688888899998875321 112222335555444454 345677
Q ss_pred HHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC---------------------CCCCHhhHHHHHHH
Q 046547 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE---------------------CVPDLESYSIVIGA 215 (343)
Q Consensus 157 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------------------~~~~~~~~~~ll~~ 215 (343)
++.+++...+ .|+ +-..+..++-+++|..+|++..-.+ -.-....|+.+..+
T Consensus 1041 ~YI~rLdnyD-a~~------ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakA 1113 (1666)
T KOG0985|consen 1041 EYINRLDNYD-APD------IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKA 1113 (1666)
T ss_pred HHHHHhccCC-chh------HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHH
Confidence 7777775432 122 1122333344445555444332110 01124567777778
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
-...|.+.+|++-|-+. -|+..|.-+++...+.|.+++-.+.+...+++.-.|...+ .||-+|++.++..+
T Consensus 1114 QL~~~~v~dAieSyika-------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~--eLi~AyAkt~rl~e 1184 (1666)
T KOG0985|consen 1114 QLQGGLVKDAIESYIKA-------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDS--ELIFAYAKTNRLTE 1184 (1666)
T ss_pred HHhcCchHHHHHHHHhc-------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchH--HHHHHHHHhchHHH
Confidence 77788877777655432 2667899999999999999999999988888777776554 78999999999888
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.++++. -||......+.+-|...|.++.|.-+|..+..
T Consensus 1185 lE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vSN 1222 (1666)
T KOG0985|consen 1185 LEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYSNVSN 1222 (1666)
T ss_pred HHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHHHhhh
Confidence 777653 36666666677777777777777666655443
No 144
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.73 E-value=0.026 Score=53.39 Aligned_cols=191 Identities=11% Similarity=0.007 Sum_probs=80.9
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
+.|..++|..+++.....+.. |..|..++-..|-.. ++.++|..+|+...+. .|+......+..+|.+.+.+.+-.
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~-~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ 130 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDL-GKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ 130 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHH-hhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence 445556666555555443323 445544444443333 3456666666655543 444444445555555555544433
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCC----------hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARK----------TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a 261 (343)
+.=-+|.+. .+-+.+.|=++++.....-. ..-|.+.++.+.++.|-.-+..-.-.-.-.+-..|++++|
T Consensus 131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea 209 (932)
T KOG2053|consen 131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA 209 (932)
T ss_pred HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence 332222221 11122222222222222110 1123444444444322111111111122223345556666
Q ss_pred HHHHH-HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 262 VEMIE-FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 262 ~~~~~-~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.+++. ...+.-...+...-+.-+..+...+++.+..++-.++..+|
T Consensus 210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 66653 22222222222333344455555666666666666665555
No 145
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.72 E-value=0.0014 Score=47.34 Aligned_cols=100 Identities=13% Similarity=-0.006 Sum_probs=71.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC--CCCchhhHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKG--CPIGFQGYEVVV 284 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li 284 (343)
++-.+...+.+.|++++|.+.|..+.....- ......+..+..++.+.|+++.|...++.+.... .......+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 4556777788888999999999888753111 1113456668888888899999999998887632 111234566666
Q ss_pred HHHHhcccHhHHHHHHHHHhHCC
Q 046547 285 EGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
..+.+.|+.++|.+.++++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 77888888899999888888764
No 146
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=97.72 E-value=0.032 Score=49.85 Aligned_cols=88 Identities=14% Similarity=0.087 Sum_probs=51.9
Q ss_pred HHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCC-hhhHHHHHHHHhhcCCChH
Q 046547 39 RAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP-KIAYDYLLSYTLQSLHPLP 117 (343)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~ 117 (343)
.+....|+++.|...|-+..... .++...|......+...+.+.+.++...+.....|+ ...|+-.=. ++...|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~-p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Ga-a~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLS-PTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGA-ALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccC-CCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHH-HHHhcccHH
Confidence 45567788888888887655432 334444543334444445566666555443344445 345666554 444558888
Q ss_pred HHHHHHHHHHh
Q 046547 118 LALAILQRTLR 128 (343)
Q Consensus 118 ~a~~~~~~m~~ 128 (343)
+|+..|.+-++
T Consensus 88 eA~~ay~~GL~ 98 (539)
T KOG0548|consen 88 EAILAYSEGLE 98 (539)
T ss_pred HHHHHHHHHhh
Confidence 88888877655
No 147
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.69 E-value=0.0007 Score=49.40 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=59.3
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHh---------------hhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGM---------------SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m---------------~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
..++..+|.++++.|+++...++++.. ......|+..+..+++.+|+..|++..|+++.+...++
T Consensus 2 e~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~ 81 (126)
T PF12921_consen 2 EELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRK 81 (126)
T ss_pred hHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 455666666666666666666665443 12235677888888888888888888888888888877
Q ss_pred CCCCCchhHHHHHHHHHHh
Q 046547 236 MGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 236 ~~~~p~~~~~~~li~~~~~ 254 (343)
++++.+..+|..|++-...
T Consensus 82 Y~I~i~~~~W~~Ll~W~~v 100 (126)
T PF12921_consen 82 YPIPIPKEFWRRLLEWAYV 100 (126)
T ss_pred cCCCCCHHHHHHHHHHHHH
Confidence 7877777888888775443
No 148
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.69 E-value=0.00014 Score=49.25 Aligned_cols=81 Identities=10% Similarity=-0.021 Sum_probs=38.1
Q ss_pred CccHHHHHHHHHHHHHcCC-CCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 255 NREMWKAVEMIEFLERKGC-PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
.|+++.|..+++++.+..- .|+...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 3555666666666554321 11222233345556666666666666655 11111 122333344555666666666666
Q ss_pred HHHH
Q 046547 334 VRQR 337 (343)
Q Consensus 334 ~~~~ 337 (343)
++++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
No 149
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.64 E-value=0.003 Score=45.54 Aligned_cols=100 Identities=10% Similarity=0.010 Sum_probs=71.2
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCC--CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC-CCCchhHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC--VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG-LMPRQGMVIKV 248 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~~~~~~~l 248 (343)
.++-.+...+.+.|++++|.+.|+.+.+... ......+..+..++...|+++.|...|+.+..... .+.....+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 3455666777888888888888888876431 11134566678888888888888888888875311 11124556777
Q ss_pred HHHHHhCccHHHHHHHHHHHHHc
Q 046547 249 AAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
..++.+.|+.++|...++++.+.
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHH
Confidence 77888888888888888888775
No 150
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.63 E-value=0.027 Score=50.43 Aligned_cols=151 Identities=10% Similarity=-0.000 Sum_probs=116.6
Q ss_pred hhHHHHHHHHHHhc-CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 152 SQSVADILLEMKSI-GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 152 ~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
.+.....++++... .++|+ -+|-.+|+.-.+..-++.|..+|.+..+.+..+ ...++++++.-+|. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 44555566666443 24444 567778888888888999999999999888777 78888999887765 6678999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF--QGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+--..+ ..-++.--...+..+...++-..+..+|++....++.|+. ..|..+|+.=..-|+...+.++-+++...
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a 501 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA 501 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 987753 3334444567788888999999999999999988776654 58999999988999999988888776543
No 151
>PLN02789 farnesyltranstransferase
Probab=97.60 E-value=0.038 Score=47.59 Aligned_cols=186 Identities=9% Similarity=-0.057 Sum_probs=124.3
Q ss_pred ccCchhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccC-cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC--hh
Q 046547 148 RRCQSQSVADILLEMKSIGYHPD-CGTCNYLVSSLCAID-QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TN 223 (343)
Q Consensus 148 ~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~ 223 (343)
.++..++|+.+..+..+. .|+ ..+|+.--..+...| ++++++..++++.+...+ +..+|+.--..+.+.|+ .+
T Consensus 49 ~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~ 125 (320)
T PLN02789 49 SDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAAN 125 (320)
T ss_pred cCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhH
Confidence 344577888888888764 343 344554445555666 689999999999876532 34456544444445555 36
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---ccH----hHH
Q 046547 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC---REY----ILA 296 (343)
Q Consensus 224 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~----~~a 296 (343)
+++.+++.+.+ .-+-+..+|+-.-.++.+.|+++++++.++++.+.... |...|+.....+.+. |.. ++.
T Consensus 126 ~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence 78889988885 33457788888888888999999999999999987654 555666555444443 222 456
Q ss_pred HHHHHHHhHCCCCCCHHHHHHHHHHHhcc----CChhHHHHHHHHHHh
Q 046547 297 GKTVMGMTERGFIPYIKVRQKVVEGLAGV----GEWKLATVVRQRFAE 340 (343)
Q Consensus 297 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~ 340 (343)
+++..+++... +-|...|+.+...+... ++..+|.+++.+..+
T Consensus 203 l~y~~~aI~~~-P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~ 249 (320)
T PLN02789 203 LKYTIDAILAN-PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS 249 (320)
T ss_pred HHHHHHHHHhC-CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc
Confidence 77776666553 23667777777777663 445668888777554
No 152
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.59 E-value=0.0016 Score=44.21 Aligned_cols=91 Identities=13% Similarity=-0.049 Sum_probs=45.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
.+...+...|++++|...+++... -.+.+...+..+...+...+++++|.+.++...+.. +.+..++..+...+...
T Consensus 5 ~~a~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 5 NLGNLYYKLGDYDEALEYYEKALE--LDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHhcHHHHHHHHHHHHh--cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence 344444555555555555555543 122223444455555555555555555555554432 11223444555555555
Q ss_pred ccHhHHHHHHHHHh
Q 046547 291 REYILAGKTVMGMT 304 (343)
Q Consensus 291 g~~~~a~~~~~~m~ 304 (343)
|+++.|...+....
T Consensus 82 ~~~~~a~~~~~~~~ 95 (100)
T cd00189 82 GKYEEALEAYEKAL 95 (100)
T ss_pred HhHHHHHHHHHHHH
Confidence 66666655555543
No 153
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.58 E-value=0.014 Score=54.83 Aligned_cols=164 Identities=13% Similarity=-0.019 Sum_probs=101.5
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
..|.+++|+.+|.+-++.. |++-+.+..|.+++|.++-+.=-+-.+ ..||...-..+-..++.+.|+
T Consensus 812 eLgMlEeA~~lYr~ckR~D----------LlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di~~Al 878 (1416)
T KOG3617|consen 812 ELGMLEEALILYRQCKRYD----------LLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDIEAAL 878 (1416)
T ss_pred HHhhHHHHHHHHHHHHHHH----------HHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccHHHHH
Confidence 4577888888888776632 233333444567777766554222111 234544445555566677776
Q ss_pred HHHHHhhhCC-------------------CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 192 KVLKGMSSAE-------------------CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 192 ~~~~~m~~~~-------------------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
+.|++-.... -..|...|.-.-..+-..|+.|.|+.+|...+. |-++++..
T Consensus 879 eyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~ 948 (1416)
T KOG3617|consen 879 EYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIK 948 (1416)
T ss_pred HHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeE
Confidence 6665432210 012334455555566677888888888877652 66778888
Q ss_pred HhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
|-.|+.++|-++-++-. |....=.|.+.|-..|++.+|..+|.+..
T Consensus 949 C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 949 CIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred eeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 88899998888877432 33344456778888888888888887653
No 154
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=97.55 E-value=0.075 Score=50.51 Aligned_cols=223 Identities=13% Similarity=0.142 Sum_probs=131.3
Q ss_pred HHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCC
Q 046547 40 AAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP 115 (343)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~ 115 (343)
.....+++..|+....++... .|+.... ...+.+.|+.+.+-..++......+. |..+...+-. +|...++
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~--D~~tLq~l~~-~y~d~~~ 92 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT--DDLTLQFLQN-VYRDLGK 92 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC--chHHHHHHHH-HHHHHhh
Confidence 344567888888888877754 4555433 34556777777777777665443333 6677777774 8888889
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC-c--------
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID-Q-------- 186 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~-~-------- 186 (343)
.++|..+|+...+. .|+..-...+..+|.+.. .+.+-.+.--+|-+ .++-++..+=++++...+.- .
T Consensus 93 ~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~-~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i 168 (932)
T KOG2053|consen 93 LDEAVHLYERANQK--YPSEELLYHLFMAYVREK-SYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPI 168 (932)
T ss_pred hhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHH-HHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccch
Confidence 99999999988764 466555555555666654 34332222222222 12333444444555444321 1
Q ss_pred -HHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHH-HHHhcCCCCCchhHHHHHHHHHHhCccHHHHHH
Q 046547 187 -LVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMK-EMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 187 -~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~-~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
..-|.+.++.+.+.+.+.. ..-.-.-+..+...|++++|.+++. ...++ -...+...-+--+..+...++|.+..+
T Consensus 169 ~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~-l~~~~~~l~~~~~dllk~l~~w~~l~~ 247 (932)
T KOG2053|consen 169 LLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEK-LTSANLYLENKKLDLLKLLNRWQELFE 247 (932)
T ss_pred hHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh-ccccchHHHHHHHHHHHHhcChHHHHH
Confidence 2335566666665441211 1112222344556778889988884 33332 333344444566777788888888888
Q ss_pred HHHHHHHcC
Q 046547 264 MIEFLERKG 272 (343)
Q Consensus 264 ~~~~m~~~g 272 (343)
+-.++..+|
T Consensus 248 l~~~Ll~k~ 256 (932)
T KOG2053|consen 248 LSSRLLEKG 256 (932)
T ss_pred HHHHHHHhC
Confidence 888888766
No 155
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.54 E-value=0.0033 Score=53.22 Aligned_cols=145 Identities=7% Similarity=-0.026 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHhcC-CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIG-YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 136 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
.+|..++...-+.+| .+.|..+|.+..+.+ ...+.....++|+.+ ..++.+.|.++|+...+. ...+...+..-++
T Consensus 2 ~v~i~~m~~~~r~~g-~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~-~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEG-IEAARKVFKRARKDKRCTYHVYVAYALMEYY-CNKDPKRARKIFERGLKK-FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHH-HHHHHHHHHHHHCCCCS-THHHHHHHHHHHH-TCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHH
Confidence 467888887666654 899999999998543 223333333444333 357777899999998765 4556777888889
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 287 (343)
-+...|+.+.|..+|+.... .+.++. ..|...++.=.+.|+++.+.++.+++.+ ..|+......+++-|
T Consensus 79 ~l~~~~d~~~aR~lfer~i~--~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~--~~~~~~~~~~f~~ry 150 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAIS--SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE--LFPEDNSLELFSDRY 150 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCC--TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH--HTTTS-HHHHHHCCT
T ss_pred HHHHhCcHHHHHHHHHHHHH--hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--HhhhhhHHHHHHHHh
Confidence 99999999999999999985 444443 5899999999999999999999999987 345555555555444
No 156
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.53 E-value=0.00026 Score=47.86 Aligned_cols=81 Identities=11% Similarity=0.070 Sum_probs=45.8
Q ss_pred CCChhHHHHHHHHHHhcCCC-CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHH
Q 046547 219 ARKTNDAVEMMKEMVLNMGL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297 (343)
Q Consensus 219 ~~~~~~a~~~~~~m~~~~~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 297 (343)
.|+++.|+.+++.+.+. .- .|+...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|+
T Consensus 2 ~~~y~~Ai~~~~k~~~~-~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi 78 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLEL-DPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAI 78 (84)
T ss_dssp TT-HHHHHHHHHHHHHH-HCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHH
T ss_pred CccHHHHHHHHHHHHHH-CCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHH
Confidence 46677777777777753 21 12344444467777777777777777766 221111 1122223455677777777777
Q ss_pred HHHHH
Q 046547 298 KTVMG 302 (343)
Q Consensus 298 ~~~~~ 302 (343)
+.+++
T Consensus 79 ~~l~~ 83 (84)
T PF12895_consen 79 KALEK 83 (84)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 77664
No 157
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.45 E-value=0.0045 Score=48.05 Aligned_cols=64 Identities=13% Similarity=-0.115 Sum_probs=36.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP--DLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
...|..+...+...|++++|...|++.......| ...++..+-..+...|++++|+..++....
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555556666666666666665432221 123556666666666666666666666653
No 158
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.42 E-value=0.033 Score=49.91 Aligned_cols=149 Identities=9% Similarity=-0.013 Sum_probs=113.5
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
.+.....+++.+..-..--+.+|...++.--+..-+..|..+|.+..+. +..+ ++.+++++|..+|. ++..-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 4556666666665433223456778888888888889999999999975 7777 88889999998875 5678899999
Q ss_pred HHHHHcCCCCchhhH-HHHHHHHHhcccHhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 266 EFLERKGCPIGFQGY-EVVVEGCLECREYILAGKTVMGMTERGFIPY--IKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 266 ~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
+-=.++ -+|...| ...+..+...|+-..|..+|++....++.|| ...|..+++-=..-|+...+.++-+++.
T Consensus 425 eLGLkk--f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~ 499 (656)
T KOG1914|consen 425 ELGLKK--FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRF 499 (656)
T ss_pred HHHHHh--cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 863332 2333333 4567778889999999999999998877765 5689999998889999999999887764
No 159
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.42 E-value=0.099 Score=47.96 Aligned_cols=66 Identities=12% Similarity=0.007 Sum_probs=48.4
Q ss_pred CchhhHH--HHHHHHHhcccHhHHHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 275 IGFQGYE--VVVEGCLECREYILAGKTVMGMTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 275 p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
|+...|+ .++..|-+.|+++.|..+++...+. .|+ +..|..=.+.+...|+.++|..++++..+++
T Consensus 367 PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 367 PTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred chHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 4444333 4566788899999999999887754 454 3345444577888999999999999888775
No 160
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.39 E-value=0.0013 Score=42.46 Aligned_cols=66 Identities=9% Similarity=-0.019 Sum_probs=49.2
Q ss_pred hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHhhcC
Q 046547 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG-EWKLATVVRQRFAELKS 343 (343)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~ 343 (343)
..+|..+-..+...|++++|+..|++..+.. +-+...|..+..+|...| ++++|++.+++..++.|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4566667777788888888888888877764 235667777777888888 68888888888777654
No 161
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.37 E-value=0.014 Score=45.47 Aligned_cols=88 Identities=11% Similarity=-0.084 Sum_probs=52.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD--LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 249 (343)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+++... -.+-+...+..+.
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg 113 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALE--LNPKQPSALNNIA 113 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCcccHHHHHHHH
Confidence 3455555666667777777777777665432221 34566667777777777777777777664 2222344455555
Q ss_pred HHHHhCccHHHH
Q 046547 250 AALRANREMWKA 261 (343)
Q Consensus 250 ~~~~~~~~~~~a 261 (343)
..+...|+...+
T Consensus 114 ~~~~~~g~~~~a 125 (172)
T PRK02603 114 VIYHKRGEKAEE 125 (172)
T ss_pred HHHHHcCChHhH
Confidence 566665554433
No 162
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.36 E-value=0.02 Score=48.53 Aligned_cols=19 Identities=5% Similarity=0.011 Sum_probs=12.7
Q ss_pred HhhcCCChHHHHHHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTL 127 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~ 127 (343)
.+...|++++|...|.+..
T Consensus 44 ~fk~~~~~~~A~~ay~kAa 62 (282)
T PF14938_consen 44 CFKLAKDWEKAAEAYEKAA 62 (282)
T ss_dssp HHHHTT-CHHHHHHHHHHH
T ss_pred HHHHHhccchhHHHHHHHH
Confidence 5666677787777777764
No 163
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.35 E-value=0.0036 Score=54.92 Aligned_cols=101 Identities=13% Similarity=-0.041 Sum_probs=80.1
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcc
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECR 291 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 291 (343)
...+...|++++|++.|++..+ --+-+...|..+..+|.+.|++++|...++...+. .| +...|..+-.+|...|
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL--DPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhC
Confidence 4566778999999999999985 33446778888899999999999999999999874 34 4557888888899999
Q ss_pred cHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 292 EYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
++++|...|++....+ |+......++
T Consensus 85 ~~~eA~~~~~~al~l~--P~~~~~~~~l 110 (356)
T PLN03088 85 EYQTAKAALEKGASLA--PGDSRFTKLI 110 (356)
T ss_pred CHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 9999999999988754 5444444333
No 164
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.32 E-value=0.0017 Score=41.35 Aligned_cols=57 Identities=14% Similarity=-0.009 Sum_probs=34.0
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..+.+.|++++|.+.|++..+.. +-+...+..+..++...|++++|...|++..+..
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 34556666666666666666554 2245556666666666666666666666665544
No 165
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.31 E-value=0.0071 Score=46.91 Aligned_cols=113 Identities=14% Similarity=0.011 Sum_probs=77.2
Q ss_pred HHHHHHHHHhh-hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHhCccHHHHHHH
Q 046547 188 VEAAKVLKGMS-SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP--RQGMVIKVAAALRANREMWKAVEM 264 (343)
Q Consensus 188 ~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~ 264 (343)
..+...+..+. ..+..-....|..+...+...|++++|+..|+..... ...| ...++..+-..+...|+.++|.+.
T Consensus 16 ~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~ 94 (168)
T CHL00033 16 TIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEY 94 (168)
T ss_pred ccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33444444442 3333333556777888888899999999999998752 2222 235788888999999999999999
Q ss_pred HHHHHHcCCCCc-hhhHHHHHHHHH-------hcccHhHHHHHHHHH
Q 046547 265 IEFLERKGCPIG-FQGYEVVVEGCL-------ECREYILAGKTVMGM 303 (343)
Q Consensus 265 ~~~m~~~g~~p~-~~~~~~li~~~~-------~~g~~~~a~~~~~~m 303 (343)
++..... .|+ ..++..+...+. ..|+++.|...+++.
T Consensus 95 ~~~Al~~--~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 95 YFQALER--NPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHHh--CcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 9998864 333 345555555566 778888776666554
No 166
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.29 E-value=0.011 Score=46.05 Aligned_cols=89 Identities=12% Similarity=-0.068 Sum_probs=58.0
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEV 282 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 282 (343)
...|..+...+...|++++|...|++.... ...+. ...+..+...+.+.|++++|...+.+..+. .| +...+..
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKL-EEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-hhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 345666777777888888888888887742 22221 356777777788888888888888877763 33 3344555
Q ss_pred HHHHHHhcccHhHHH
Q 046547 283 VVEGCLECREYILAG 297 (343)
Q Consensus 283 li~~~~~~g~~~~a~ 297 (343)
+...|...|+...+.
T Consensus 112 lg~~~~~~g~~~~a~ 126 (172)
T PRK02603 112 IAVIYHKRGEKAEEA 126 (172)
T ss_pred HHHHHHHcCChHhHh
Confidence 555666666544433
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.25 E-value=0.028 Score=51.77 Aligned_cols=60 Identities=10% Similarity=-0.056 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
..|.++.-.+...|++++|...+++..+.+ |+...|..+-..+...|+.++|.+.+++..
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~ 480 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAF 480 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344444333344455555555555544422 344444444444555555555555554443
No 168
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.23 E-value=0.0094 Score=52.34 Aligned_cols=81 Identities=7% Similarity=-0.025 Sum_probs=36.9
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
++++|.+.|++..+.. +-+...|..+..+|.+.|++++|...+++..+.. +.+...|..+..+|...|++++|+..|+
T Consensus 17 ~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~eA~~~~~ 94 (356)
T PLN03088 17 DFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQTAKAALE 94 (356)
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 3455555555554432 1223344444444455555555555555544432 1123344444444555555555555555
Q ss_pred HHH
Q 046547 231 EMV 233 (343)
Q Consensus 231 ~m~ 233 (343)
...
T Consensus 95 ~al 97 (356)
T PLN03088 95 KGA 97 (356)
T ss_pred HHH
Confidence 544
No 169
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.22 E-value=0.024 Score=52.23 Aligned_cols=84 Identities=10% Similarity=-0.092 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 046547 258 MWKAVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 258 ~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 336 (343)
+..+.+........ ....+...|.++--.....|++++|...+++..+.. |+...|..+...+...|+.++|.+.++
T Consensus 400 l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~ 477 (517)
T PRK10153 400 LAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYS 477 (517)
T ss_pred HHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 34444444443332 122344566666555556788888888888877655 677778888888888888888888888
Q ss_pred HHHhhcC
Q 046547 337 RFAELKS 343 (343)
Q Consensus 337 ~m~~~~~ 343 (343)
+..+++|
T Consensus 478 ~A~~L~P 484 (517)
T PRK10153 478 TAFNLRP 484 (517)
T ss_pred HHHhcCC
Confidence 8776653
No 170
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=97.17 E-value=0.14 Score=44.68 Aligned_cols=166 Identities=10% Similarity=0.023 Sum_probs=88.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHhc---CCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAE---CVPDLESYSIVIGAMST---ARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
...++-+|....+++...++++.+...- +.-....--....++.+ .|+.++|++++..+..+ .-.++..+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 3345556777778888888888776641 11111111123344555 77778888887775542 55566667766
Q ss_pred HHHHHHh---------CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc-Hh---HHHHHH---HH-HhHCCC--
Q 046547 248 VAAALRA---------NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE-YI---LAGKTV---MG-MTERGF-- 308 (343)
Q Consensus 248 li~~~~~---------~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~-~~---~a~~~~---~~-m~~~g~-- 308 (343)
+-..|-. ....++|...|.+--+ +.||.++=-.+...+.-.|. .+ +..++- .. +.++|.
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe--~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~ 300 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFE--IEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE 300 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHc--CCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence 6555432 1245666666665433 33443321111111222221 11 122221 11 222332
Q ss_pred -CCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 309 -IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 309 -~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..|-..+.+++.++.-.|+.+.|.+..++|.+++
T Consensus 301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 2355666777888888888888888888877765
No 171
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=97.10 E-value=0.0056 Score=50.15 Aligned_cols=104 Identities=16% Similarity=0.146 Sum_probs=75.2
Q ss_pred CCCCCChhhHHHHHHHHhh-----cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---------------cCch
Q 046547 93 RPRSRPKIAYDYLLSYTLQ-----SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER---------------RCQS 152 (343)
Q Consensus 93 ~~~~p~~~~~~~li~~~~~-----~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------------~~~~ 152 (343)
.|...|..+|-+.+. .+. +.+.++-....+..|.+.|+.-|..+|+.||+.+=+. .++-
T Consensus 61 ~~~~RdK~sfl~~V~-~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ 139 (406)
T KOG3941|consen 61 EPEKRDKDSFLAAVA-TFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQ 139 (406)
T ss_pred CcccccHHHHHHHHH-HHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhh
Confidence 444556667766664 332 3466788888899999999999999999998875332 1222
Q ss_pred hHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc-HHHHHHHHHHh
Q 046547 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ-LVEAAKVLKGM 197 (343)
Q Consensus 153 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m 197 (343)
+-+.+++++|..+|+.||..+-..|++++++.+- ..+...+.-.|
T Consensus 140 ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWm 185 (406)
T KOG3941|consen 140 NCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWM 185 (406)
T ss_pred hHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhh
Confidence 4577899999999999999999999999988774 33444444444
No 172
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=97.09 E-value=0.0083 Score=43.80 Aligned_cols=97 Identities=11% Similarity=-0.023 Sum_probs=61.1
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
|..++.++|.++++.|+.+....+.+.. .|+.++...-. +. .-......|+..+..+++
T Consensus 1 de~~~~~ii~al~r~g~~~~i~~~i~~~---WgI~~~~~~~~---------~~---------~~~~spl~Pt~~lL~AIv 59 (126)
T PF12921_consen 1 DEELLCNIIYALGRSGQLDSIKSYIKSV---WGIDVNGKKKE---------GD---------YPPSSPLYPTSRLLIAIV 59 (126)
T ss_pred ChHHHHHHHHHHhhcCCHHHHHHHHHHh---cCCCCCCcccc---------Cc---------cCCCCCCCCCHHHHHHHH
Confidence 4567888888888888888888877653 34443321100 00 111334667777777777
Q ss_pred HHHHhcccHhHHHHHHHHHhHC-CCCCCHHHHHHHHHHH
Q 046547 285 EGCLECREYILAGKTVMGMTER-GFIPYIKVRQKVVEGL 322 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~ 322 (343)
.+|+..|++..|+++.+...+. ++..+..+|..|++-.
T Consensus 60 ~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 60 HSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred HHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 7777777777777777776554 6665667777776643
No 173
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.07 E-value=0.014 Score=43.98 Aligned_cols=58 Identities=12% Similarity=0.090 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
...++..+...|++++|..+...+.... +.+...|..+|.+|...|+..+|.+.|+++
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3344444445555555555555544421 123334555555555555555555555443
No 174
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.06 E-value=0.017 Score=49.00 Aligned_cols=118 Identities=12% Similarity=0.063 Sum_probs=51.4
Q ss_pred CchhHHHHHHHHHHhc----CCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhh----CCCCCC--HhhHHHHHHHHhc
Q 046547 150 CQSQSVADILLEMKSI----GYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSS----AECVPD--LESYSIVIGAMST 218 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~----g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~~--~~~~~~ll~~~~~ 218 (343)
+++++|.+.|....+. +-+.+ ...|......|.+ .++++|...+++... .| .|+ ...+..+...|-.
T Consensus 49 ~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-~~~~aA~~~~~lA~~ye~ 126 (282)
T PF14938_consen 49 KDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-RFSQAAKCLKELAEIYEE 126 (282)
T ss_dssp T-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHCC
T ss_pred hccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHH
Confidence 4566666666555321 11111 1223333333333 366666666555432 22 122 2344555555555
Q ss_pred C-CChhHHHHHHHHHHh---cCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 219 A-RKTNDAVEMMKEMVL---NMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 219 ~-~~~~~a~~~~~~m~~---~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
. |++++|++.|++..+ ..+ .+. ...+..+...+.+.|++++|.++|++...
T Consensus 127 ~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 127 QLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp TT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5 566666666555442 111 111 22344445555556666666666665544
No 175
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.04 E-value=0.14 Score=42.34 Aligned_cols=181 Identities=11% Similarity=0.014 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH---HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 046547 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC---NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212 (343)
Q Consensus 136 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 212 (343)
..|..-... ...+ ++++|.+.|+++...-..+ .... -.+..++.+.+++++|...+++..+....-...-|...
T Consensus 34 ~~Y~~A~~~-~~~g-~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y 110 (243)
T PRK10866 34 EIYATAQQK-LQDG-NWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLY 110 (243)
T ss_pred HHHHHHHHH-HHCC-CHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHH
Confidence 344555443 4544 6888999998887753222 2221 24556778888999999999888876432223344444
Q ss_pred HHHHhc--CC---------------C---hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 213 IGAMST--AR---------------K---TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 213 l~~~~~--~~---------------~---~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
+.+.+. .+ + ..+|+..|+++. +-|=...-..+|...+..+.+.
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li----------------~~yP~S~ya~~A~~rl~~l~~~- 173 (243)
T PRK10866 111 MRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLV----------------RGYPNSQYTTDATKRLVFLKDR- 173 (243)
T ss_pred HHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHH----------------HHCcCChhHHHHHHHHHHHHHH-
Confidence 544432 11 1 122334444444 3333333355555444444321
Q ss_pred CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTER--GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 273 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
.-..-+ .+...|.+.|.+..|..-++.+.+. +-+........++.+|...|..++|..+...+.
T Consensus 174 --la~~e~-~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 174 --LAKYEL-SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred --HHHHHH-HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 000111 3456689999999999999999876 444456677889999999999999998876654
No 176
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.04 E-value=0.002 Score=41.37 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=45.8
Q ss_pred HhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 253 RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
.+.|++++|.++|+.+.+..- -+...+-.+...|.+.|++++|.++++++.... |+...|..++
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~--~~~~~~~~l~ 65 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQD--PDNPEYQQLL 65 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG--TTHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCHHHHHHHH
Confidence 567889999999998877431 255566678888999999999999998887653 5544454443
No 177
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.02 E-value=0.14 Score=49.55 Aligned_cols=180 Identities=13% Similarity=0.025 Sum_probs=123.8
Q ss_pred hhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 152 SQSVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
...++..|-+..+. .|+ ...|..|-..|+...+...|.+.|++.-+.. ..+........+.|+...+++.|..+.-
T Consensus 474 ~~~al~ali~alrl--d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l 550 (1238)
T KOG1127|consen 474 SALALHALIRALRL--DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICL 550 (1238)
T ss_pred HHHHHHHHHHHHhc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHH
Confidence 44555555444433 232 3578888889988889999999999887653 2356677889999999999999999944
Q ss_pred HHHhcCCCCCchhHHHHH--HHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 231 EMVLNMGLMPRQGMVIKV--AAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
...++ -+.-...+|.+ --.|...++...|..-|..... +.| |...|..+.++|.++|++..|+++|.+...
T Consensus 551 ~~~qk--a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~-- 624 (1238)
T KOG1127|consen 551 RAAQK--APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL-- 624 (1238)
T ss_pred HHhhh--chHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--
Confidence 43332 11112223333 2346677888888888887766 444 566888999999999999999999987764
Q ss_pred CCCCHHHHHHHHH--HHhccCChhHHHHHHHHHHhh
Q 046547 308 FIPYIKVRQKVVE--GLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 308 ~~p~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+.|+ .+|..... .-+..|++.+|...++.+..-
T Consensus 625 LrP~-s~y~~fk~A~~ecd~GkYkeald~l~~ii~~ 659 (1238)
T KOG1127|consen 625 LRPL-SKYGRFKEAVMECDNGKYKEALDALGLIIYA 659 (1238)
T ss_pred cCcH-hHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 3454 33443333 355678888888888776543
No 178
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.02 E-value=0.0021 Score=41.29 Aligned_cols=51 Identities=14% Similarity=0.148 Sum_probs=25.2
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
..|++++|+++|+++.. ..+-+...+..+..+|.+.|++++|.++++.+..
T Consensus 3 ~~~~~~~A~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQ--RNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HTTHHHHHHHHHHHHHH--HTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hccCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34555555555555543 2222444444555555555555555555555544
No 179
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=96.93 E-value=0.11 Score=49.26 Aligned_cols=234 Identities=11% Similarity=-0.024 Sum_probs=137.1
Q ss_pred hhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhc-C--------CCccHHHHHHHH
Q 046547 72 NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRS-G--------CVPVPQIRLLLS 142 (343)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~-~--------~~p~~~~~~~li 142 (343)
.+..-|..+.+-+.++... +...|..+-+ .|.+..+++-|.-.+-.|... | -.|+...-...
T Consensus 737 fyvtiG~MD~AfksI~~Ik-------S~~vW~nmA~-McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvA- 807 (1416)
T KOG3617|consen 737 FYVTIGSMDAAFKSIQFIK-------SDSVWDNMAS-MCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVA- 807 (1416)
T ss_pred EEEEeccHHHHHHHHHHHh-------hhHHHHHHHH-HhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHH-
Confidence 3344455454444444432 3466776665 455555555554444433211 1 12222221111
Q ss_pred HHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCCh
Q 046547 143 SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKT 222 (343)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 222 (343)
.++-..+..++|..+|.+-++. ..|=..|-..|.+++|.++-+.=..-.+ ..||-.-..-+-..++.
T Consensus 808 -vLAieLgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~Lear~Di 874 (1416)
T KOG3617|consen 808 -VLAIELGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKYLEARRDI 874 (1416)
T ss_pred -HHHHHHhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHHHHhhccH
Confidence 2222334688888888887663 2333456678999999888764333222 33555555566667778
Q ss_pred hHHHHHHHHHH-----------hc-------CCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 223 NDAVEMMKEMV-----------LN-------MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 223 ~~a~~~~~~m~-----------~~-------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
+.|++.|++-. +. -.-..|...|..--..+-..|+.|.|+.+|...++ |-+++
T Consensus 875 ~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~V 945 (1416)
T KOG3617|consen 875 EAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMV 945 (1416)
T ss_pred HHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhhe
Confidence 88877776522 10 00112444455445555567788888888776554 33456
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+..|-.|+.++|-++-++- | |....-.|.+.|-..|++.+|..+|-+...++
T Consensus 946 rI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafs 997 (1416)
T KOG3617|consen 946 RIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQAFS 997 (1416)
T ss_pred eeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 6677788888888887642 3 45555678899999999999999998876654
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.92 E-value=0.063 Score=38.82 Aligned_cols=51 Identities=10% Similarity=0.161 Sum_probs=20.5
Q ss_pred ccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 183 AIDQLVEAAKVLKGMSSAECVPD--LESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
..|+.++|..+|++....|.... ...+-.+-.++...|++++|..++++..
T Consensus 13 ~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~ 65 (120)
T PF12688_consen 13 SLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEAL 65 (120)
T ss_pred hcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34444444444444444443222 1122233333444444444444444443
No 181
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.89 E-value=0.033 Score=41.96 Aligned_cols=109 Identities=17% Similarity=0.120 Sum_probs=69.8
Q ss_pred CHhhHHHHHHH---HHccCcHHHHHHHHHHhhhC--C-CCCCH------------------hhHHHHHHHHhcCCChhHH
Q 046547 170 DCGTCNYLVSS---LCAIDQLVEAAKVLKGMSSA--E-CVPDL------------------ESYSIVIGAMSTARKTNDA 225 (343)
Q Consensus 170 ~~~~~~~ll~~---~~~~~~~~~a~~~~~~m~~~--~-~~~~~------------------~~~~~ll~~~~~~~~~~~a 225 (343)
|...|..++.. ....++.+.+...++++... | .-|+. .+...++..+...|++++|
T Consensus 2 D~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a 81 (146)
T PF03704_consen 2 DVDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEA 81 (146)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Confidence 34455555433 34567888888888887753 2 22221 1234555667778999999
Q ss_pred HHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH-----HcCCCCchhhH
Q 046547 226 VEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE-----RKGCPIGFQGY 280 (343)
Q Consensus 226 ~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~-----~~g~~p~~~~~ 280 (343)
..+.+.+.. .-+-|...|..+|.+|...|+...|.+.|+.+. +.|+.|+..+-
T Consensus 82 ~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 82 LRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 999998885 445577889999999999999999999888775 34888877663
No 182
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.89 E-value=0.021 Score=43.00 Aligned_cols=87 Identities=11% Similarity=-0.086 Sum_probs=62.9
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 189 (343)
+...|++++|.++|+-+.. +.|....|..=+.+.++..+++++|+..|....... +-|+..+-.+-.++...|+.+.
T Consensus 45 ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~~~~ 121 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDNVCY 121 (157)
T ss_pred HHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCCHHH
Confidence 3356888888888888776 346666666666666777777888888888877665 3456677777778888888888
Q ss_pred HHHHHHHhhh
Q 046547 190 AAKVLKGMSS 199 (343)
Q Consensus 190 a~~~~~~m~~ 199 (343)
|.+.|+....
T Consensus 122 A~~aF~~Ai~ 131 (157)
T PRK15363 122 AIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHH
Confidence 8888876654
No 183
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=96.87 E-value=0.047 Score=41.18 Aligned_cols=93 Identities=10% Similarity=-0.012 Sum_probs=67.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
.+-.-+...|++++|.++|+.... --+-+..-|-.|--++-..|++++|...|........ -|...+-.+-.++...
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHc
Confidence 445556678888888888888774 2223444566677777778888888888888777543 3556677777788888
Q ss_pred ccHhHHHHHHHHHhHC
Q 046547 291 REYILAGKTVMGMTER 306 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~ 306 (343)
|+.+.|.+-|+..+..
T Consensus 117 G~~~~A~~aF~~Ai~~ 132 (157)
T PRK15363 117 DNVCYAIKALKAVVRI 132 (157)
T ss_pred CCHHHHHHHHHHHHHH
Confidence 8888888888876654
No 184
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=96.82 E-value=0.012 Score=48.23 Aligned_cols=102 Identities=22% Similarity=0.145 Sum_probs=75.1
Q ss_pred CccHHHHHHHHHHHHhc----cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC----------------cHHHHH
Q 046547 132 VPVPQIRLLLSSAWLER----RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID----------------QLVEAA 191 (343)
Q Consensus 132 ~p~~~~~~~li~~~~~~----~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----------------~~~~a~ 191 (343)
+-|..+|...+..+... .+.++-....++.|.+.|+.-|..+|+.||+.+-+-. +-+-++
T Consensus 64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I 143 (406)
T KOG3941|consen 64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI 143 (406)
T ss_pred cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence 44666777776665432 3456666778889999999999999999998876532 224478
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChh-HHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTN-DAVEMMKEMV 233 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~ 233 (343)
+++++|...|+.||-.+-..|++++++-+-.- +..++.--|-
T Consensus 144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 99999999999999999999999998877532 3334443333
No 185
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.81 E-value=0.032 Score=46.58 Aligned_cols=98 Identities=10% Similarity=0.032 Sum_probs=64.7
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch----hHHHHHHHHHHhCccHHHHHHHHHHHHHcC--CCCchhh
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ----GMVIKVAAALRANREMWKAVEMIEFLERKG--CPIGFQG 279 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~ 279 (343)
...|...+..+.+.|++++|+..|+..... .|+. ..+-.+-.+|...|++++|...|+.+.+.- -......
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dA 219 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADA 219 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHH
Confidence 345666665556678888888888888754 2332 466677777888888888888888877531 1111223
Q ss_pred HHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 280 YEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+-.+...+...|+.++|.++|+++.+.
T Consensus 220 l~klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 220 MFKVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 333445566788888888888877765
No 186
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.77 E-value=0.014 Score=48.24 Aligned_cols=101 Identities=16% Similarity=-0.020 Sum_probs=77.9
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREY 293 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~ 293 (343)
-+.+.+++++|+..|.+..+ =.+-|.+-|..=..+|++.|.++.|++=.+..+. +.|. ..+|..|-.+|...|++
T Consensus 90 ~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~--iDp~yskay~RLG~A~~~~gk~ 165 (304)
T KOG0553|consen 90 KLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS--IDPHYSKAYGRLGLAYLALGKY 165 (304)
T ss_pred HHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh--cChHHHHHHHHHHHHHHccCcH
Confidence 45668899999999999884 3344666778888899999999999887776665 4454 45889999999999999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 046547 294 ILAGKTVMGMTERGFIPYIKVRQKVVEG 321 (343)
Q Consensus 294 ~~a~~~~~~m~~~g~~p~~~~~~~li~~ 321 (343)
++|.+.|++..+ +.|+-.+|..=+..
T Consensus 166 ~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 166 EEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 999999988775 55777777655443
No 187
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.75 E-value=0.32 Score=41.93 Aligned_cols=111 Identities=20% Similarity=0.137 Sum_probs=88.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
-+.+.-|.-+...|+...|.++-.+.+ .|+..-|-..+.+++..++|++-.++... . -++.-|-.++.+
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s-----k--KsPIGyepFv~~ 246 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS-----K--KSPIGYEPFVEA 246 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC-----C--CCCCChHHHHHH
Confidence 355666777888899999988877663 48999999999999999999988876432 1 245789999999
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
|.+.|+..+|..+... + ++..-+..|.+.|++.+|.+.-.+.
T Consensus 247 ~~~~~~~~eA~~yI~k-----~-----~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 247 CLKYGNKKEASKYIPK-----I-----PDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHCCCHHHHHHHHHh-----C-----ChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999998886 2 2345688899999999998875544
No 188
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=96.70 E-value=0.0096 Score=37.74 Aligned_cols=22 Identities=14% Similarity=-0.002 Sum_probs=7.8
Q ss_pred HHHHHHHHhCccHHHHHHHHHH
Q 046547 246 IKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~ 267 (343)
..+-.++...|++++|...|++
T Consensus 35 ~~lg~~~~~~g~~~~A~~~~~~ 56 (65)
T PF13432_consen 35 YLLGRILYQQGRYDEALAYYER 56 (65)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHH
Confidence 3333333333333333333333
No 189
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=96.67 E-value=0.06 Score=38.93 Aligned_cols=105 Identities=11% Similarity=0.034 Sum_probs=70.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc---hh-hHHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG---FQ-GYEVVVE 285 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~-~~~~li~ 285 (343)
+-.++-..|+.++|+.+|++... .|...+ ...+-.+-+.+...|++++|..++++..... |+ .. ....+--
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~-~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~--p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALA-AGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF--PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHH-cCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCccccHHHHHHHHH
Confidence 34566678889999999999887 476654 3456667777888899999999998877632 33 11 1122234
Q ss_pred HHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHh
Q 046547 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 323 (343)
++...|+.++|+..+-.... ++..-|..-|..|.
T Consensus 84 ~L~~~gr~~eAl~~~l~~la----~~~~~y~ra~~~ya 117 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEALA----ETLPRYRRAIRFYA 117 (120)
T ss_pred HHHHCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 56778888988888766543 33345665555554
No 190
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=96.60 E-value=0.53 Score=45.79 Aligned_cols=216 Identities=12% Similarity=-0.022 Sum_probs=142.0
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 193 (343)
.+...|+..|=+..+.... =...|..|-..|+... +...|.+.|+...+.+ ..+..........|....+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~-~apaf~~LG~iYrd~~-Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVS-LAPAFAFLGQIYRDSD-DMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence 3466666666665553311 1245677766676665 5677888888776543 33566788889999999999999988
Q ss_pred HHHhhhCCCCCCHhhHHHH--HHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 194 LKGMSSAECVPDLESYSIV--IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 194 ~~~m~~~~~~~~~~~~~~l--l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.-.--+. -+.-...+|.+ --.|...++..+|+.-|+...+ --+-|...|..+.++|...|++..|.++|.+...
T Consensus 549 ~l~~~qk-a~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR--~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~- 624 (1238)
T KOG1127|consen 549 CLRAAQK-APAFACKENWVQRGPYYLEAHNLHGAVCEFQSALR--TDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL- 624 (1238)
T ss_pred HHHHhhh-chHHHHHhhhhhccccccCccchhhHHHHHHHHhc--CCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh-
Confidence 3222221 11112223333 2346678889999999998874 4455888999999999999999999999998776
Q ss_pred CCCCchhhHHHHHHH--HHhcccHhHHHHHHHHHhHC------CCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 272 GCPIGFQGYEVVVEG--CLECREYILAGKTVMGMTER------GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 272 g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m~~~------g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
+.|+. +|.....+ -+..|++.+|...+...... +..--..++-.+...+.-.|-...|..++++-
T Consensus 625 -LrP~s-~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eks 697 (1238)
T KOG1127|consen 625 -LRPLS-KYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKS 697 (1238)
T ss_pred -cCcHh-HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 55654 44444333 56789999999988876532 11122445555555555566666666666543
No 191
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.57 E-value=0.011 Score=38.51 Aligned_cols=56 Identities=11% Similarity=-0.052 Sum_probs=40.7
Q ss_pred HHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 250 AALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
..|.+.+++++|.++++.+... .| +...+...-..+.+.|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALEL--DPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHh--CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 4677788888888888888774 33 34455556667888888888888888877654
No 192
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.53 E-value=0.0089 Score=39.52 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=34.3
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHC----CC-CCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTER----GF-IPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+|+.+-..|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|.+++++..++
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4555555566666666666666554432 10 121 445666666666666666666666665543
No 193
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.52 E-value=0.37 Score=39.86 Aligned_cols=181 Identities=12% Similarity=0.028 Sum_probs=110.1
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHH----HHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR----LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
...|..-.. .+ ..|++++|.+.|+++...- |++... -.+..++.+.+ ++++|...+++..+.-..-....|
T Consensus 33 ~~~Y~~A~~-~~-~~g~y~~Ai~~f~~l~~~y--P~s~~a~~a~l~la~ayy~~~-~y~~A~~~~e~fi~~~P~~~~~~~ 107 (243)
T PRK10866 33 SEIYATAQQ-KL-QDGNWKQAITQLEALDNRY--PFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDY 107 (243)
T ss_pred HHHHHHHHH-HH-HCCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhCcCCCchHH
Confidence 345565554 34 4699999999999998754 433221 22334556654 799999999999876433333455
Q ss_pred HHHHHHHHc--cC---------------c---HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 175 NYLVSSLCA--ID---------------Q---LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 175 ~~ll~~~~~--~~---------------~---~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
...+.+.+. .+ + ..+|.+.|+ .+++-|=.+.-.++|...+..+..
T Consensus 108 a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~---------------~li~~yP~S~ya~~A~~rl~~l~~ 172 (243)
T PRK10866 108 VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFS---------------KLVRGYPNSQYTTDATKRLVFLKD 172 (243)
T ss_pred HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHH---------------HHHHHCcCChhHHHHHHHHHHHHH
Confidence 555555442 10 1 122333333 444444444445666655555543
Q ss_pred cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK--GCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 235 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
+ .-. .--.+..-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.++...+.
T Consensus 173 ~----la~-~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 173 R----LAK-YELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred H----HHH-HHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 2 011 1125566688888898888888888864 333344566678888999999998888776553
No 194
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.32 E-value=0.11 Score=42.44 Aligned_cols=143 Identities=8% Similarity=-0.085 Sum_probs=101.9
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH-
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA- 250 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~- 250 (343)
.+.+.++..+...|.+.-...++.+..+..-+.+....+.|.+.-...|+.+.|...|+..++. .-..|..+++.++-
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHh
Confidence 4456677777778888888899999988776777888888888889999999999999988853 55556666655543
Q ss_pred ----HHHhCccHHHHHHHHHHHHHcCCCCchhhHH--HHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 251 ----ALRANREMWKAVEMIEFLERKGCPIGFQGYE--VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 251 ----~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
.|.-++++..|...+.+.....- .|....| +|+.. -.|+..+|.+.++.|++.. |...+-++++-
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~-~~~~a~NnKALcll--Ylg~l~DAiK~~e~~~~~~--P~~~l~es~~~ 327 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDP-RNAVANNNKALCLL--YLGKLKDALKQLEAMVQQD--PRHYLHESVLF 327 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCC-CchhhhchHHHHHH--HHHHHHHHHHHHHHHhccC--CccchhhhHHH
Confidence 45566788888888887765421 1223333 34444 4688999999999998764 55555554443
No 195
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=96.30 E-value=0.11 Score=43.50 Aligned_cols=98 Identities=14% Similarity=0.093 Sum_probs=64.2
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCchhHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL----ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL-MPRQGMVI 246 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~~~~~ 246 (343)
..|...+..+.+.|++++|...|+.+.+.. |+. ..+-.+..+|...|++++|...|+.+..++.- +.....+-
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 346655555566788888888888887753 443 35566777788888888888888888753111 11123333
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 247 KVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.+...+...|+.++|..+|+...+.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566778888888888877763
No 196
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=96.28 E-value=0.61 Score=39.82 Aligned_cols=261 Identities=10% Similarity=0.050 Sum_probs=158.2
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhcccchHHHHHHHHhcCCCCCC-CChhh------
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIA------ 101 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~------ 101 (343)
++-.-...|...|+...|+.=+....+. +||...- -.++.+.|..+.++.=++......|.. .....
T Consensus 74 aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~ 151 (504)
T KOG0624|consen 74 AIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLAL 151 (504)
T ss_pred HHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHh
Confidence 3333445566677777777666655443 6776543 345566666655555554444333311 01111
Q ss_pred -------HHHHHHHHhhcCCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh
Q 046547 102 -------YDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT 173 (343)
Q Consensus 102 -------~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~ 173 (343)
-..+++ ++ ..|+...|+.++..+.+ +.| |...+..--.+|...+ .+.+|+.=++...+.. .-+..+
T Consensus 152 ~~e~~~l~~ql~s-~~-~~GD~~~ai~~i~~llE--i~~Wda~l~~~Rakc~i~~~-e~k~AI~Dlk~askLs-~DnTe~ 225 (504)
T KOG0624|consen 152 IQEHWVLVQQLKS-AS-GSGDCQNAIEMITHLLE--IQPWDASLRQARAKCYIAEG-EPKKAIHDLKQASKLS-QDNTEG 225 (504)
T ss_pred HHHHHHHHHHHHH-Hh-cCCchhhHHHHHHHHHh--cCcchhHHHHHHHHHHHhcC-cHHHHHHHHHHHHhcc-ccchHH
Confidence 122333 34 45889999999999887 444 4455555556666665 5777766555554432 223445
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh----HHHH---------HHHHhcCCChhHHHHHHHHHHhcCCCCC
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES----YSIV---------IGAMSTARKTNDAVEMMKEMVLNMGLMP 240 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~----~~~l---------l~~~~~~~~~~~a~~~~~~m~~~~~~~p 240 (343)
+-.+-..+...|+.+.++...++..+. .||-.. |-.| +......++|.++++-.+...+. .-..
T Consensus 226 ~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~ 302 (504)
T KOG0624|consen 226 HYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEE 302 (504)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcc
Confidence 555667788889999999888888764 355432 2111 22345567777787777776643 2221
Q ss_pred c---hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 241 R---QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 241 ~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
. ...+..+-.++...+++.+|++.-.+..+ +.|| ..++.--..+|.-...++.|+.=|+...+.
T Consensus 303 ~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~--~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~ 370 (504)
T KOG0624|consen 303 TMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD--IDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALEL 370 (504)
T ss_pred cceeeeeeheeeecccccCCHHHHHHHHHHHHh--cCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 1 23344556666777889999988888776 5565 667776777788888888888877776543
No 197
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.24 E-value=0.26 Score=35.80 Aligned_cols=66 Identities=11% Similarity=-0.024 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
...+.-+..+...|+-|+-.+++.++.+. -.+++...-.+-.+|.+.|+..++.+++.+..++|++
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666677777777777777776642 3455555566677788888888888888877777754
No 198
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=96.22 E-value=0.029 Score=35.94 Aligned_cols=59 Identities=12% Similarity=0.026 Sum_probs=24.1
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc-cHhHHHHHHHHH
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR-EYILAGKTVMGM 303 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m 303 (343)
+|..+-..+...|++++|...|++..+.. +-+...|..+-.+|...| ++++|++.+++.
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 34444444444444444444444444321 112223333344444444 344444444443
No 199
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=96.16 E-value=0.31 Score=43.06 Aligned_cols=129 Identities=9% Similarity=0.049 Sum_probs=86.8
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHhcC-CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhH-HHHH
Q 046547 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIG-YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESY-SIVI 213 (343)
Q Consensus 136 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll 213 (343)
..|...|++..+..| ++.|..+|-+..+.| +.+++..++++|..++. |+..-|..+|+-=... -||...| +-.+
T Consensus 398 ~v~C~~~N~v~r~~G-l~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 398 FVFCVHLNYVLRKRG-LEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hHHHHHHHHHHHHhh-HHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 345566666555554 778888888888877 56777788888887764 6677788888753332 2343333 3445
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.-+...++-+.|..+|+.-.. .+..+ ...|..+|+.=..-|+...+..+=+.|.+
T Consensus 474 ~fLi~inde~naraLFetsv~--r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 474 LFLIRINDEENARALFETSVE--RLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHH--HHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 566677888888888886553 33333 46788888887888888777776666665
No 200
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.10 E-value=0.87 Score=39.88 Aligned_cols=94 Identities=14% Similarity=0.076 Sum_probs=51.0
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCC--CccHHHHHHHH-HHHHh--ccCchhHHHHHHHHHHhcCCccCHhhHHH
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGC--VPVPQIRLLLS-SAWLE--RRCQSQSVADILLEMKSIGYHPDCGTCNY 176 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li-~~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ 176 (343)
.+.++ .|....+++...++.+.+..... .++........ -++-+ ..|+.++|.+++.......-.+++.+|..
T Consensus 145 ~~lll--SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL 222 (374)
T PF13281_consen 145 INLLL--SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL 222 (374)
T ss_pred HHHHH--HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence 45555 36677778888888888765411 11111111111 12222 13456778888777655556777777777
Q ss_pred HHHHHHc---------cCcHHHHHHHHHHh
Q 046547 177 LVSSLCA---------IDQLVEAAKVLKGM 197 (343)
Q Consensus 177 ll~~~~~---------~~~~~~a~~~~~~m 197 (343)
+...|.. ....++|.+.|.+-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kg 252 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKG 252 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHH
Confidence 7666542 11345555555544
No 201
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.07 E-value=0.29 Score=40.14 Aligned_cols=131 Identities=11% Similarity=-0.078 Sum_probs=94.5
Q ss_pred CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH-----HHHhcCCChhH
Q 046547 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI-----GAMSTARKTND 224 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~~~~~~~~~~~ 224 (343)
+.+.-....+++..+...+.++.....|.+.-.+.||.+.|...|++..+..-..|..+++.++ ..|.-.+++..
T Consensus 191 kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~ 270 (366)
T KOG2796|consen 191 KEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAE 270 (366)
T ss_pred hhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHH
Confidence 3466667788888887667778888888888889999999999999887654444544544443 45667788999
Q ss_pred HHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 225 AVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 225 a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
|...++++.. .-..|....|.-.-+..-.|+..+|.+.++.|.+ ..|...+-++++
T Consensus 271 a~r~~~~i~~--~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~--~~P~~~l~es~~ 326 (366)
T KOG2796|consen 271 AHRFFTEILR--MDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQ--QDPRHYLHESVL 326 (366)
T ss_pred HHHHHhhccc--cCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhc--cCCccchhhhHH
Confidence 9999988875 2233455555555555567899999999999987 456655555433
No 202
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.04 E-value=0.61 Score=42.68 Aligned_cols=165 Identities=15% Similarity=0.083 Sum_probs=111.4
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCC-CCCC-----HhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCchh
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPD-----LESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLMPRQG 243 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~-----~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~ 243 (343)
+..+++..+=.|+-+.+++.+.+-.+.+ +.-. .-+|..++..++. ..+.+.|.++++.+..+ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 4556677777899999999888765533 2221 2345555555554 45678899999999854 56765
Q ss_pred HHHHHH-HHHHhCccHHHHHHHHHHHHHcC---CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 244 MVIKVA-AALRANREMWKAVEMIEFLERKG---CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 244 ~~~~li-~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
.|...- +.+...|++++|.+.|++..... -+.....+--+...+.-.+++++|.+.|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 554433 34567899999999999765421 11223344456667888999999999999998864 23444454443
Q ss_pred H-HHhccCCh-------hHHHHHHHHHHhhc
Q 046547 320 E-GLAGVGEW-------KLATVVRQRFAELK 342 (343)
Q Consensus 320 ~-~~~~~g~~-------~~a~~~~~~m~~~~ 342 (343)
- ++...|+. ++|.++|.+...++
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~ 377 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPKLK 377 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHHHH
Confidence 3 34557888 89999998887664
No 203
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=1.1 Score=40.42 Aligned_cols=196 Identities=14% Similarity=0.018 Sum_probs=119.8
Q ss_pred HHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHH-HHHHHHHHhccCchhHHHHHHHHHHhcCCccC------HhhHH
Q 046547 103 DYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIR-LLLSSAWLERRCQSQSVADILLEMKSIGYHPD------CGTCN 175 (343)
Q Consensus 103 ~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~------~~~~~ 175 (343)
..+-+..+ +..+++.|++-++...+.. ...+| +..-.+|...+ .+.+....-+.-.+.|...- ...+.
T Consensus 228 k~lgnaay-kkk~f~~a~q~y~~a~el~---~~it~~~n~aA~~~e~~-~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 228 KELGNAAY-KKKDFETAIQHYAKALELA---TDITYLNNIAAVYLERG-KYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred HHHHHHHH-HhhhHHHHHHHHHHHHhHh---hhhHHHHHHHHHHHhcc-HHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 34444333 4578999999999887754 33444 44444555544 45555554444444432211 11222
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH-------------------------HHHHHHhcCCChhHHHHHHH
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS-------------------------IVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-------------------------~ll~~~~~~~~~~~a~~~~~ 230 (343)
.+-.+|.+.++.+.+.+.|.+.......|+..+=. .--+.+.+.|++..|+..|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 34446667788888888888876655555433211 11345667788999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch-hhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF-QGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
++.. .-+-|...|+.-..+|.+.+.+..|+.=.+...+. .|+. ..|..=..++....++++|++.|.+..+.+
T Consensus 383 eAIk--r~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 383 EAIK--RDPEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--DPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHh--cCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9885 33667788888888999998888888776666653 3432 233333333444556777888877766554
No 204
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=96.00 E-value=0.85 Score=38.89 Aligned_cols=128 Identities=15% Similarity=0.235 Sum_probs=68.7
Q ss_pred hHHHHHHHHHHhcCCccCHhhHHHHHHHHHc--cC----cHHHHHHHHHHhhhCCC---CCCHhhHHHHHHHHhcCCC--
Q 046547 153 QSVADILLEMKSIGYHPDCGTCNYLVSSLCA--ID----QLVEAAKVLKGMSSAEC---VPDLESYSIVIGAMSTARK-- 221 (343)
Q Consensus 153 ~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~-- 221 (343)
++...+++.|.+.|++-+..+|-+....... .. ....|.++|+.|++... .++-..+..++.. ..++
T Consensus 79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e 156 (297)
T PF13170_consen 79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE 156 (297)
T ss_pred HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence 3445677777777777766555442222222 12 34567777777776542 3344555555443 2333
Q ss_pred --hhHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHhCc---cHHHHHHHHHHHHHcCCCCchhhHHHH
Q 046547 222 --TNDAVEMMKEMVLNMGLMPRQG-MVIKVAAALRANR---EMWKAVEMIEFLERKGCPIGFQGYEVV 283 (343)
Q Consensus 222 --~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~~l 283 (343)
.+.+..+|+.+.. .|+..+-. -+-+-|-++.... ...++.++++.+.+.|+++....|..+
T Consensus 157 ~l~~~~E~~Y~~L~~-~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 157 ELAERMEQCYQKLAD-AGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHH-hCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 2445666666665 36655432 2222233333221 244677777777777777766666654
No 205
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=95.97 E-value=0.032 Score=36.81 Aligned_cols=62 Identities=11% Similarity=-0.099 Sum_probs=34.5
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHc--CCC---Cc-hhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERK--GCP---IG-FQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.+|+.+-..|...|++++|+..|++..+. ... |+ ..++..+-..|...|++++|++++++..
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34566666666666666666666655432 011 11 3355555666666667776666666543
No 206
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.91 E-value=0.15 Score=42.42 Aligned_cols=102 Identities=15% Similarity=0.043 Sum_probs=83.8
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCcc
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANRE 257 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~ 257 (343)
+-+.+.+++++|+..|.+.++.. +-|.+-|..=..+|++.|.++.|++=.+.... +.| -..+|..|=.+|...|+
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~-P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~gk 164 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELD-PTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLALGK 164 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcC-CCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHccCc
Confidence 34678899999999999998863 34677788889999999999999998888763 233 35789999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 286 (343)
+++|.+-|++..+ +.|+-.+|..=+..
T Consensus 165 ~~~A~~aykKaLe--ldP~Ne~~K~nL~~ 191 (304)
T KOG0553|consen 165 YEEAIEAYKKALE--LDPDNESYKSNLKI 191 (304)
T ss_pred HHHHHHHHHhhhc--cCCCcHHHHHHHHH
Confidence 9999999998877 88988887654443
No 207
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.88 E-value=0.71 Score=37.00 Aligned_cols=63 Identities=16% Similarity=0.251 Sum_probs=30.1
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCC-c-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhc
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCV-P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI 165 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~-p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~ 165 (343)
..|..-.. .+ ..|++++|.+.|+++...... | -....-.+..++.+.+ +++.|...++++.+.
T Consensus 7 ~lY~~a~~-~~-~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~-~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 7 ALYQKALE-AL-QQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQG-DYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHH-HH-HCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHH
T ss_pred HHHHHHHH-HH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHH
Confidence 44444443 33 346677777777776653211 1 1112223334445543 566666666666553
No 208
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=95.73 E-value=0.82 Score=36.64 Aligned_cols=184 Identities=8% Similarity=-0.043 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCc--cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 136 QIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 136 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
..|..-... ...| ++++|.+.|+.+...-.. --....-.+..++.+.|+++.|...++++.+.-..-...-+...+
T Consensus 7 ~lY~~a~~~-~~~g-~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~ 84 (203)
T PF13525_consen 7 ALYQKALEA-LQQG-DYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM 84 (203)
T ss_dssp HHHHHHHHH-HHCT--HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred HHHHHHHHH-HHCC-CHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence 344444443 4544 688888888888765211 112344556778888889999988888877643211122233333
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCC-----chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMP-----RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
.+.+......... . ....+ -...+..+|.-|=...-..+|...+..+.+. .-..-+ .+...|.
T Consensus 85 ~g~~~~~~~~~~~------~--~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~---la~~e~-~ia~~Y~ 152 (203)
T PF13525_consen 85 LGLSYYKQIPGIL------R--SDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR---LAEHEL-YIARFYY 152 (203)
T ss_dssp HHHHHHHHHHHHH---------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH---HHHHHH-HHHHHHH
T ss_pred HHHHHHHhCccch------h--cccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH---HHHHHH-HHHHHHH
Confidence 3332111111110 0 00000 1223455555555555566666555555431 000111 2456699
Q ss_pred hcccHhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 289 ECREYILAGKTVMGMTER--GFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+.|.+..|..-++.+++. +..-.....-.++.+|.+.|..+.|..
T Consensus 153 ~~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~ 199 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT 199 (203)
T ss_dssp CTT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred HcccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence 999999999999998876 222234466788899999998885543
No 209
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.68 E-value=0.96 Score=40.70 Aligned_cols=156 Identities=8% Similarity=0.060 Sum_probs=80.2
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKV 193 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~ 193 (343)
.+.+.-.+.=.+..+ +.||-.+.-+++.. .......++.+++++..+.|- ..+ .+....+..-..
T Consensus 182 Rnp~aRIkaA~eALe--i~pdCAdAYILLAE--EeA~Ti~Eae~l~rqAvkAgE----~~l-------g~s~~~~~~g~~ 246 (539)
T PF04184_consen 182 RNPQARIKAAKEALE--INPDCADAYILLAE--EEASTIVEAEELLRQAVKAGE----ASL-------GKSQFLQHHGHF 246 (539)
T ss_pred CCHHHHHHHHHHHHH--hhhhhhHHHhhccc--ccccCHHHHHHHHHHHHHHHH----Hhh-------chhhhhhcccch
Confidence 445555555555544 44665554444432 112235678888877665431 111 111111111111
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC
Q 046547 194 LKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273 (343)
Q Consensus 194 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 273 (343)
++........|-..+=.-+-.++-+.|+.++|++.+++|.+.....-.......|+.++...+.+.++..++.+..+...
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~l 326 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISL 326 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccC
Confidence 22222222222233333455566677888888888888874322112344667788888888888888888887654322
Q ss_pred CC-chhhHHHHH
Q 046547 274 PI-GFQGYEVVV 284 (343)
Q Consensus 274 ~p-~~~~~~~li 284 (343)
+. -..+|+..+
T Consensus 327 pkSAti~YTaAL 338 (539)
T PF04184_consen 327 PKSATICYTAAL 338 (539)
T ss_pred CchHHHHHHHHH
Confidence 21 233566544
No 210
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=95.67 E-value=0.11 Score=33.68 Aligned_cols=54 Identities=13% Similarity=0.012 Sum_probs=26.2
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.|.+.+++++|.++++.+.. -.+.+...+...-.++.+.|++++|.+.++...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALE--LDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHH--hCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34445555555555555543 1222344444444555555555555555555544
No 211
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=95.57 E-value=1.6 Score=38.83 Aligned_cols=137 Identities=13% Similarity=0.101 Sum_probs=76.8
Q ss_pred HhCccCcchHHHHHHHchhcCCCCChHHH---------hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 41 AVDAKDYQQIPELLGSFEEACQNPNPFSF---------LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
+-+.++++++.++|.+.-+.. ..++..+ ++++. ..+.+..+..+..+.+..|..|-...|-.+.. |
T Consensus 16 Lqkq~~~~esEkifskI~~e~-~~~~f~lkeEvl~grilnAff-l~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~--Y- 90 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEK-ESSPFLLKEEVLGGRILNAFF-LNNLDLMEKQLMELRQQFGKSAYLPLFKALVA--Y- 90 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHh-hcchHHHHHHHHhhHHHHHHH-HhhHHHHHHHHHHHHHhcCCchHHHHHHHHHH--H-
Confidence 446788899999998876532 2222222 12221 22334444444444443444444555555552 3
Q ss_pred cCCChHHHHHHHHHHHhc--CCCc------------cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCc----cCHhh
Q 046547 112 SLHPLPLALAILQRTLRS--GCVP------------VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH----PDCGT 173 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~--~~~p------------~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~----~~~~~ 173 (343)
+.+++..|++.+..-..+ +..| |-.--+....+++..| .+.++..+++++...=++ -+..+
T Consensus 91 ~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g-~f~EgR~iLn~i~~~llkrE~~w~~d~ 169 (549)
T PF07079_consen 91 KQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETG-RFSEGRAILNRIIERLLKRECEWNSDM 169 (549)
T ss_pred HhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHhhhhhcccHHH
Confidence 457788888888776654 3222 2222244556666665 478888887777654333 56777
Q ss_pred HHHHHHHHHc
Q 046547 174 CNYLVSSLCA 183 (343)
Q Consensus 174 ~~~ll~~~~~ 183 (343)
|+.++-.+++
T Consensus 170 yd~~vlmlsr 179 (549)
T PF07079_consen 170 YDRAVLMLSR 179 (549)
T ss_pred HHHHHHHHhH
Confidence 8776655554
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.55 E-value=1.9 Score=39.56 Aligned_cols=85 Identities=13% Similarity=0.036 Sum_probs=42.2
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC---CccCHhhHHHHHHHHHccCcHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG---YHPDCGTCNYLVSSLCAIDQLVEA 190 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g---~~~~~~~~~~ll~~~~~~~~~~~a 190 (343)
.+.+.|.++++.+.++ -|+...|...-.-+....++.++|.+.|+...... .+.....+--+...+.-..++++|
T Consensus 247 ~~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A 324 (468)
T PF10300_consen 247 VPLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA 324 (468)
T ss_pred CCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence 3455566666666553 35555555554444444455666666666443210 011112233334445555666666
Q ss_pred HHHHHHhhhC
Q 046547 191 AKVLKGMSSA 200 (343)
Q Consensus 191 ~~~~~~m~~~ 200 (343)
.+.|..+.+.
T Consensus 325 ~~~f~~L~~~ 334 (468)
T PF10300_consen 325 AEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHhc
Confidence 6666666553
No 213
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.50 E-value=2.3 Score=40.22 Aligned_cols=114 Identities=16% Similarity=0.074 Sum_probs=86.3
Q ss_pred CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhH
Q 046547 201 ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 201 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
|....-.+.+--+.-+...|+..+|.++-.+.+ .||-..|-.=+.+++..++|++-.++-+.++. +.-|
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy 747 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGY 747 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCc
Confidence 333444556666777788899999988877765 38999999999999999999888777665432 4667
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 334 (343)
.-.+.+|.+.|+.++|.+++-+.- +.. -.+.+|.+.|++.+|.++
T Consensus 748 ~PFVe~c~~~~n~~EA~KYiprv~-----~l~----ekv~ay~~~~~~~eAad~ 792 (829)
T KOG2280|consen 748 LPFVEACLKQGNKDEAKKYIPRVG-----GLQ----EKVKAYLRVGDVKEAADL 792 (829)
T ss_pred hhHHHHHHhcccHHHHhhhhhccC-----ChH----HHHHHHHHhccHHHHHHH
Confidence 778899999999999999987432 211 567888889988888765
No 214
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=95.50 E-value=0.32 Score=43.30 Aligned_cols=99 Identities=13% Similarity=0.050 Sum_probs=69.4
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch----hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ----GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
+.+...++.+-.+|...|++++|+..|++..+ +.|+. .+|..+..+|.+.|+.++|.+.+++..+.+ .|
T Consensus 72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~--- 144 (453)
T PLN03098 72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL--- 144 (453)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---
Confidence 33567889999999999999999999999874 34664 358999999999999999999999988742 11
Q ss_pred hHHHHHH--HHHhcccHhHHHHHHHHHhHCCC
Q 046547 279 GYEVVVE--GCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 279 ~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
.|..+.. .+....+.++..++++.+...|.
T Consensus 145 ~f~~i~~DpdL~plR~~pef~eLlee~rk~G~ 176 (453)
T PLN03098 145 KFSTILNDPDLAPFRASPEFKELQEEARKGGE 176 (453)
T ss_pred hHHHHHhCcchhhhcccHHHHHHHHHHHHhCC
Confidence 2221111 01222333456666666666664
No 215
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=95.46 E-value=0.68 Score=42.90 Aligned_cols=201 Identities=13% Similarity=0.108 Sum_probs=113.6
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHH
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 195 (343)
+-+...-+++|+++|-.|+........ +| .+ .+.+|.++|.+- |.. |.-++.|.....++.|.+++.
T Consensus 616 ~L~li~EL~~~k~rge~P~~iLlA~~~-Ay--~g-KF~EAAklFk~~---G~e------nRAlEmyTDlRMFD~aQE~~~ 682 (1081)
T KOG1538|consen 616 YLELISELEERKKRGETPNDLLLADVF-AY--QG-KFHEAAKLFKRS---GHE------NRALEMYTDLRMFDYAQEFLG 682 (1081)
T ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHH-Hh--hh-hHHHHHHHHHHc---Cch------hhHHHHHHHHHHHHHHHHHhh
Confidence 555666677888889888876654443 33 33 577888887653 322 122333444444444443332
Q ss_pred H-------hh--hC-CCCCCHhhHHHHHHHHhcCCChhHHHHHHHH-----HHhcCCCC---CchhHHHHHHHHHHhCcc
Q 046547 196 G-------MS--SA-ECVPDLESYSIVIGAMSTARKTNDAVEMMKE-----MVLNMGLM---PRQGMVIKVAAALRANRE 257 (343)
Q Consensus 196 ~-------m~--~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-----m~~~~~~~---p~~~~~~~li~~~~~~~~ 257 (343)
. |. ++ ...-+..-=.+....+..+|+.++|..+.-+ |.-+-+.+ .+..+.-.+...+-+...
T Consensus 683 ~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~ylk~l~~ 762 (1081)
T KOG1538|consen 683 SGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATYLKKLDS 762 (1081)
T ss_pred cCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHHHhhccc
Confidence 1 10 00 0000111112334555667777777655322 11111112 234444555555556677
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-----------HHHHHHHHHHHhccC
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY-----------IKVRQKVVEGLAGVG 326 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-----------~~~~~~li~~~~~~g 326 (343)
+..|-++|..|-+. ..+++.....+++++|..+-+..-+ +.|| ..-|.-.-++|.++|
T Consensus 763 ~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe--~~~dVy~pyaqwLAE~DrFeEAqkAfhkAG 831 (1081)
T KOG1538|consen 763 PGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE--FKDDVYMPYAQWLAENDRFEEAQKAFHKAG 831 (1081)
T ss_pred cchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc--ccccccchHHHHhhhhhhHHHHHHHHHHhc
Confidence 88888888877542 2466777888999999888775432 2233 223566667899999
Q ss_pred ChhHHHHHHHHHHh
Q 046547 327 EWKLATVVRQRFAE 340 (343)
Q Consensus 327 ~~~~a~~~~~~m~~ 340 (343)
+..+|.++++++..
T Consensus 832 r~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 832 RQREAVQVLEQLTN 845 (1081)
T ss_pred chHHHHHHHHHhhh
Confidence 99999999988753
No 216
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.44 E-value=1.3 Score=37.03 Aligned_cols=136 Identities=9% Similarity=-0.015 Sum_probs=73.0
Q ss_pred chhHHHHHHHHHHh-cCCccCHhhHHHHHHHHHc-cC-cHHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHhcCCChhHHH
Q 046547 151 QSQSVADILLEMKS-IGYHPDCGTCNYLVSSLCA-ID-QLVEAAKVLKGMSS-AECVPDLESYSIVIGAMSTARKTNDAV 226 (343)
Q Consensus 151 ~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~~~~a~ 226 (343)
.+-+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+-+.. .|..++..+...+|..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 45555555553221 2344556666666666554 11 12222223332222 234556666666777777777777777
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHH-----HHHcCCCCchhhHHHHHHH
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF-----LERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~-----m~~~g~~p~~~~~~~li~~ 286 (343)
++++......+..-|...|..+|+.-...|+..-...+.++ +++.|+..+...-..+-+.
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 77766654224455666677777777777776666666654 2344555555544444333
No 217
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=95.37 E-value=1.1 Score=37.54 Aligned_cols=135 Identities=16% Similarity=0.148 Sum_probs=98.3
Q ss_pred cCcHHHHHHHHHHhhh-CCCCCCHhhHHHHHHHHhc-CC-ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHH
Q 046547 184 IDQLVEAAKVLKGMSS-AECVPDLESYSIVIGAMST-AR-KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 260 (343)
+..+.+|+++|+...- ..+--|..+...+++.... .+ ....-.++.+-+....|-.++..+...+|+.++..++|.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 3445677777774332 3456678888888888876 33 2333455666666545678888999999999999999999
Q ss_pred HHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHHHHHH-----HhHCCCCCCHHHHHHH
Q 046547 261 AVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGKTVMG-----MTERGFIPYIKVRQKV 318 (343)
Q Consensus 261 a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~-----m~~~g~~p~~~~~~~l 318 (343)
-.++++.-... +..-|...|..+|+.....|+..-..++..+ ++..|+..+...-..+
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L 284 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQL 284 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHH
Confidence 99999987765 5666889999999999999998877777664 2344555555554443
No 218
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=95.36 E-value=0.9 Score=40.32 Aligned_cols=146 Identities=12% Similarity=0.092 Sum_probs=106.7
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh-HHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSG-CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT-CNY 176 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ 176 (343)
...|..+|.+.... .-++.|..+|-+.++.| +.++...+++.|..+|.. +..-|.++|+.-..+ -||... -+.
T Consensus 397 t~v~C~~~N~v~r~-~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~~--d~~ta~~ifelGl~~--f~d~~~y~~k 471 (660)
T COG5107 397 TFVFCVHLNYVLRK-RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYATG--DRATAYNIFELGLLK--FPDSTLYKEK 471 (660)
T ss_pred hhHHHHHHHHHHHH-hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhcC--CcchHHHHHHHHHHh--CCCchHHHHH
Confidence 35677888744444 45899999999999998 678999999999987764 567899999876554 344444 356
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPD--LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 253 (343)
.+..+...++-+.|..+|+.-... +..+ ...|..+|.--..-|+...+..+=+.|.+. -|-..+...+.+-|.
T Consensus 472 yl~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~---~pQen~~evF~Sry~ 546 (660)
T COG5107 472 YLLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL---VPQENLIEVFTSRYA 546 (660)
T ss_pred HHHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH---cCcHhHHHHHHHHHh
Confidence 677888899999999999955432 1222 568999999999999999998888887642 444444444444444
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.23 E-value=1 Score=37.66 Aligned_cols=101 Identities=14% Similarity=0.111 Sum_probs=70.4
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC---ccHHHHHHHHHHHHHcCCCC-chh
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFLERKGCPI-GFQ 278 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m~~~g~~p-~~~ 278 (343)
+-|...|-.|-.+|...|+++.|..-|....+-.| ++...+..+..++... ....++.++|+++... .| |..
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g--~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~--D~~~ir 228 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG--DNPEILLGLAEALYYQAGQQMTAKARALLRQALAL--DPANIR 228 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc--CCccHH
Confidence 44677888888888888888888888888775323 3444455555554433 3456788888888763 34 344
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+-..|-..+...|++.+|...|+.|.+..
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 55555666888888888888888888764
No 220
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=95.22 E-value=1 Score=34.56 Aligned_cols=131 Identities=9% Similarity=0.092 Sum_probs=67.8
Q ss_pred HHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 156 ADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 156 ~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
.++++.+.+.|++|+...|..+++.+.+.|++... ..+.+.++-+|+......+-.+.. ....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence 34555555666777777777777777777665433 444556666666555544433332 233344444444432
Q ss_pred CCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHH
Q 046547 236 MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 236 ~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (343)
-+ ..+..+++.+...|++-+|.++.+..... +......++++-.+.++...-..+++
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ 144 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFR 144 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHH
Confidence 00 13456666666777777777666653221 11222345555555555444333333
No 221
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.20 E-value=2.8 Score=39.52 Aligned_cols=93 Identities=16% Similarity=0.124 Sum_probs=49.9
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCC--------
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP-------- 274 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-------- 274 (343)
+-+....-.+...+.+.|.-++|.+.|-.-.. | .+-+..|...++|.+|.++-....-..+.
T Consensus 849 pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~-----p-----kaAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 849 PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL-----P-----KAAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAA 918 (1189)
T ss_pred CcccchHHHHHHHHHhhchHHHHHHHHHhccC-----c-----HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 33455555666777777777777666544321 1 13345566666677776665533211010
Q ss_pred ---CchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 275 ---IGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 275 ---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.+..+. --|..+.+.|+.-+|-+++.+|.++
T Consensus 919 qll~~~~~~-eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 919 QLLADANHM-EAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred HHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHH
Confidence 011111 1244566777777777777777543
No 222
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=95.13 E-value=0.96 Score=33.66 Aligned_cols=128 Identities=13% Similarity=0.079 Sum_probs=77.0
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
....+|. .+...+.......+++.+...+ ..+...++.++..|++.. .++..+.++. .++......+++.
T Consensus 9 ~~~~vv~-~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~--~~~ll~~l~~------~~~~yd~~~~~~~ 78 (140)
T smart00299 9 DVSEVVE-LFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD--PQKEIERLDN------KSNHYDIEKVGKL 78 (140)
T ss_pred CHHHHHH-HHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC--HHHHHHHHHh------ccccCCHHHHHHH
Confidence 3445564 5555577888888888887766 356667788888877653 3445555542 1233444557777
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC-CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA-RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
|.+.+-++++.-++.++.. |...+..+... ++++.|.+++.+-. +...|..++..+..
T Consensus 79 c~~~~l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~~-------~~~lw~~~~~~~l~ 137 (140)
T smart00299 79 CEKAKLYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQN-------NPELWAEVLKALLD 137 (140)
T ss_pred HHHcCcHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhCC-------CHHHHHHHHHHHHc
Confidence 7777777777777776633 12223333333 67777777666521 44466666665543
No 223
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.10 E-value=1.8 Score=36.65 Aligned_cols=221 Identities=10% Similarity=0.017 Sum_probs=125.0
Q ss_pred cCCChHHHHHHHHHHHhcC--CCccH------HHHHHHHHHHHhccCchhHHHHHHHHHHhc--------CCccC-----
Q 046547 112 SLHPLPLALAILQRTLRSG--CVPVP------QIRLLLSSAWLERRCQSQSVADILLEMKSI--------GYHPD----- 170 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~--~~p~~------~~~~~li~~~~~~~~~~~~a~~~~~~m~~~--------g~~~~----- 170 (343)
+.|+++.|..++.+..... ..|+. ..|+.-...+ +.+.+++.|..++++..+. ...|+
T Consensus 5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~-~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr 83 (278)
T PF08631_consen 5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLL-SKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELR 83 (278)
T ss_pred hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHH-HcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHH
Confidence 4688899999998876432 33433 2244444433 3322577777666554332 12222
Q ss_pred HhhHHHHHHHHHccCcHH---HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLV---EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
..+...+..+|...+..+ +|.++++.+.+.... ...+|-.-+..+.+.++.+.+.+++..|.. .+.-....+..
T Consensus 84 ~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~--~~~~~e~~~~~ 160 (278)
T PF08631_consen 84 LSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIR--SVDHSESNFDS 160 (278)
T ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHH--hcccccchHHH
Confidence 246677888888877654 566666666544322 244555567777779999999999999996 44323345555
Q ss_pred HHHHH---HhCccHHHHHHHHHHHHHcCCCCchh-hHH-HHHHH---HHhcc------cHhHHHHHHHHHhHC-CCCCCH
Q 046547 248 VAAAL---RANREMWKAVEMIEFLERKGCPIGFQ-GYE-VVVEG---CLECR------EYILAGKTVMGMTER-GFIPYI 312 (343)
Q Consensus 248 li~~~---~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~-~li~~---~~~~g------~~~~a~~~~~~m~~~-g~~p~~ 312 (343)
.+..+ .. .....|...+..+....+.|... ... .++.. ..+.+ +++...++++..... +-+.+.
T Consensus 161 ~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~ 239 (278)
T PF08631_consen 161 ILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSA 239 (278)
T ss_pred HHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCH
Confidence 55554 33 33456777777776655555553 111 11211 11211 244455555543332 222232
Q ss_pred HH---HHHH----HHHHhccCChhHHHHHHHH
Q 046547 313 KV---RQKV----VEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 313 ~~---~~~l----i~~~~~~g~~~~a~~~~~~ 337 (343)
.+ ..+| ...+.+.+++++|.+.|+-
T Consensus 240 ~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 240 EAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 2233 2356778999999999874
No 224
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.68 Score=38.75 Aligned_cols=114 Identities=11% Similarity=-0.012 Sum_probs=82.6
Q ss_pred ccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC---CChhHHHHHHHHHHhcCCCCCchhH
Q 046547 168 HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA---RKTNDAVEMMKEMVLNMGLMPRQGM 244 (343)
Q Consensus 168 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~p~~~~ 244 (343)
+-|...|-.|-..|...|+++.|..-|....+.- .++...+..+..++... ....++..+|+++.. .-+-|..+
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~--~D~~~ira 229 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALA--LDPANIRA 229 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh--cCCccHHH
Confidence 5578889999999999999999999999887642 23455555555554433 235678899999884 44456677
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 286 (343)
-.-|...+...|++.+|...|+.|.+. .|.......+|+.
T Consensus 230 l~lLA~~afe~g~~~~A~~~Wq~lL~~--lp~~~~rr~~ie~ 269 (287)
T COG4235 230 LSLLAFAAFEQGDYAEAAAAWQMLLDL--LPADDPRRSLIER 269 (287)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc--CCCCCchHHHHHH
Confidence 777778888999999999999999884 3444555555543
No 225
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=94.87 E-value=2.2 Score=36.44 Aligned_cols=132 Identities=11% Similarity=0.033 Sum_probs=87.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc--CCC----hhHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHhCcc-
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMST--ARK----TNDAVEMMKEMVLNMGL--MPRQGMVIKVAAALRANRE- 257 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~----~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~- 257 (343)
+++...+++.|.+.|..-+..+|-+....... ..+ ..+|..+|+.|+++..+ .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 45667889999999998888777653333333 222 45789999999975332 3456667777654 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcc---cHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 258 ---MWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECR---EYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 258 ---~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g---~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
.+.+..+|+.+.+.|+..+.. .+-+-|-++.... ....+.++++.+.+.|+++....|..+.-
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl 225 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL 225 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence 356778888888888876544 2223333333222 14578889999999999988777765543
No 226
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=94.83 E-value=0.54 Score=41.90 Aligned_cols=64 Identities=11% Similarity=0.092 Sum_probs=56.4
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL----ESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
.+...++.+-.+|.+.|++++|...|++..+.. |+. .+|..+-.+|...|+.++|+..+++..+
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356789999999999999999999999988754 553 4689999999999999999999999986
No 227
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.76 E-value=0.42 Score=40.19 Aligned_cols=99 Identities=11% Similarity=0.104 Sum_probs=51.3
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHH
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE---CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 245 (343)
....+...++..-....+++.+...+-++...- ..|+...| ++++-+ ..-+.++++.++..=.. +|+-||-.++
T Consensus 62 ~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIq-YGiF~dqf~~ 138 (418)
T KOG4570|consen 62 VSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQ-YGIFPDQFTF 138 (418)
T ss_pred cceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcch-hccccchhhH
Confidence 334444444444444556666666555554321 22332222 122222 22345566666655554 5666666666
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 246 IKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
+.+|+.+.+.+++.+|..+.-.|..
T Consensus 139 c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 139 CLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH
Confidence 6666666666666666666655554
No 228
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.74 E-value=0.57 Score=38.65 Aligned_cols=95 Identities=13% Similarity=0.160 Sum_probs=45.2
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCC----CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch-hHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAE----CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIK 247 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~ 247 (343)
.|+.-+..+ +.|++..|...|....+.. ..|+. +--|..++...|++++|..+|..+.++++-.|-. ...--
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA--~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallK 220 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNA--YYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLK 220 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchh--HHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHH
Confidence 355444433 4455556665555555432 12222 2235555555566666655555555432222211 23333
Q ss_pred HHHHHHhCccHHHHHHHHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
|-.+..+.|+.++|..+|.+..+
T Consensus 221 lg~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 221 LGVSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHH
Confidence 44444555555555555555544
No 229
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=94.73 E-value=4 Score=38.81 Aligned_cols=230 Identities=13% Similarity=-0.021 Sum_probs=125.4
Q ss_pred HHHHHHHhhcCCChHHHHHH----HHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 103 DYLLSYTLQSLHPLPLALAI----LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 103 ~~li~~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
-.+|...+....+.+++.-. +.++....+.-|+..|..+--++...| +++.+.+.|++.... .--....|+.+-
T Consensus 287 llli~es~i~Re~~~d~ilslm~~~~k~r~~~~qnd~ai~d~Lt~al~~~g-~f~~lae~fE~~~~~-~~~~~e~w~~~a 364 (799)
T KOG4162|consen 287 LLLIEESLIPRENIEDAILSLMLLLRKLRLKKFQNDAAIFDHLTFALSRCG-QFEVLAEQFEQALPF-SFGEHERWYQLA 364 (799)
T ss_pred HHHHHhhccccccHHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH-HHHHHHHHHHHHhHh-hhhhHHHHHHHH
Confidence 33343344444445554432 333334445567777777766655554 677777777776543 223346677777
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHh-cCCChhHHHHHHHHHHhc-----CCCCCchhHHHHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMS-TARKTNDAVEMMKEMVLN-----MGLMPRQGMVIKVAAA 251 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~-----~~~~p~~~~~~~li~~ 251 (343)
..|...|.-..|..+.+.-......| |...+-..-..|. +.+..++++++-.+.... ..+.|- .|-.+--+
T Consensus 365 ls~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~--~~l~lGi~ 442 (799)
T KOG4162|consen 365 LSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPR--GYLFLGIA 442 (799)
T ss_pred HHHHHhccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhh--HHHHHHHH
Confidence 77777777777777777654433223 2333322222232 345555555554444431 122222 22222222
Q ss_pred HHhC-----------ccHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHH
Q 046547 252 LRAN-----------REMWKAVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVV 319 (343)
Q Consensus 252 ~~~~-----------~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li 319 (343)
|... ....++.+.+++..+. +-.|+..-|-++ -|+..++.+.|.+...+..+-+-.-+...|..|.
T Consensus 443 y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~if~lal--q~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLA 520 (799)
T KOG4162|consen 443 YGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLVIFYLAL--QYAEQRQLTSALDYAREALALNRGDSAKAWHLLA 520 (799)
T ss_pred HHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHH--HHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 2211 1234566666666553 233433333222 3666777788888777777765455677777777
Q ss_pred HHHhccCChhHHHHHHHHH
Q 046547 320 EGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 320 ~~~~~~g~~~~a~~~~~~m 338 (343)
-.+.-.+++.+|+.+.+..
T Consensus 521 LvlSa~kr~~~Al~vvd~a 539 (799)
T KOG4162|consen 521 LVLSAQKRLKEALDVVDAA 539 (799)
T ss_pred HHHhhhhhhHHHHHHHHHH
Confidence 7777777777777776543
No 230
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.65 E-value=1.6 Score=33.97 Aligned_cols=130 Identities=15% Similarity=-0.002 Sum_probs=79.8
Q ss_pred CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC--CCCCchhH
Q 046547 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM--GLMPRQGM 244 (343)
Q Consensus 167 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~ 244 (343)
+-|+...--.|-+++...|+..+|...|++...--..-|....-.+.++....+++..|...++++.+-+ +-.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 3566666666777777777777777777777654455566666666777777777777777777766421 12233 2
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 300 (343)
.-.+.+.+...|+..+|..-|+.... .-|+...-..--..+.+.|+.+++..-+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~--~ypg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAIS--YYPGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHH--hCCCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 33555667777777777777777665 3344443333334455666655554433
No 231
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.60 E-value=1.4 Score=32.83 Aligned_cols=84 Identities=13% Similarity=0.046 Sum_probs=38.8
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN 255 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~ 255 (343)
.++..+.+.+.+.....+++.+...+. .+...++.++..|++.+. ++..+.+.. . ++......+++.|.+.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~---~----~~~yd~~~~~~~c~~~ 82 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN---K----SNHYDIEKVGKLCEKA 82 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh---c----cccCCHHHHHHHHHHc
Confidence 344444445555555555555554442 344455555555554322 223333321 0 1222233455555555
Q ss_pred ccHHHHHHHHHHH
Q 046547 256 REMWKAVEMIEFL 268 (343)
Q Consensus 256 ~~~~~a~~~~~~m 268 (343)
+-++++..++..+
T Consensus 83 ~l~~~~~~l~~k~ 95 (140)
T smart00299 83 KLYEEAVELYKKD 95 (140)
T ss_pred CcHHHHHHHHHhh
Confidence 5555555555543
No 232
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.08 E-value=3.7 Score=36.18 Aligned_cols=134 Identities=10% Similarity=-0.020 Sum_probs=78.5
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHh---cCCCC-CchhHHHHHHHHHHhCccHHHHHHHHHHHHH----cCCC-Cch
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVL---NMGLM-PRQGMVIKVAAALRANREMWKAVEMIEFLER----KGCP-IGF 277 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~-p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~-p~~ 277 (343)
..|..|-+.|.-.|+++.|+...+.-.+ +.|-. .....+..+-+++.-.|+++.|.+.|+.-.. .|-+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 4566666777777788877765543221 12221 2345677777777777888888777775432 2211 112
Q ss_pred hhHHHHHHHHHhcccHhHHHHHHHHHhHC-----CCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 278 QGYEVVVEGCLECREYILAGKTVMGMTER-----GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.+.=+|-..|.-..++++|+.++.+-..- +..-....+.+|..+|...|..+.|..+.+.-.+
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 22334555666666777777766543211 1122456677788888888888888777665443
No 233
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=94.03 E-value=1.7 Score=31.75 Aligned_cols=138 Identities=14% Similarity=0.113 Sum_probs=84.1
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
.|.+++..+++.+...+. +..-+|-+|--....- +-+-..++++. -|--.|... +|.+..+..
T Consensus 15 dG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa-~C~yvv~~Lds---IGkiFDis~----------C~NlKrVi~ 77 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAA-DCDYVVETLDS---IGKIFDISK----------CGNLKRVIE 77 (161)
T ss_dssp TT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH---HHHHHHHHHH---HGGGS-GGG-----------S-THHHHH
T ss_pred hchHHHHHHHHHHHcCcC---Cccccceeeeecchhh-chhHHHHHHHH---HhhhcCchh----------hcchHHHHH
Confidence 488888888888887643 5566777775544443 23444444444 343444332 344444444
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
.+-.+- .+.......++++...|+-|.-.+++.++.. .-.|++...-.+..||.+.|+..++.+++++.-+.|
T Consensus 78 C~~~~n-----~~se~vD~ALd~lv~~~kkDqLdki~~~l~k--n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG 150 (161)
T PF09205_consen 78 CYAKRN-----KLSEYVDLALDILVKQGKKDQLDKIYNELKK--NEEINPEFLVKIANAYKKLGNTREANELLKEACEKG 150 (161)
T ss_dssp HHHHTT--------HHHHHHHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHHHHHHHHHHHhh--ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhc
Confidence 443321 2345566778889999999999999999873 445777788889999999999999999999999888
Q ss_pred CC
Q 046547 273 CP 274 (343)
Q Consensus 273 ~~ 274 (343)
++
T Consensus 151 ~k 152 (161)
T PF09205_consen 151 LK 152 (161)
T ss_dssp -H
T ss_pred hH
Confidence 75
No 234
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.97 E-value=0.12 Score=28.16 Aligned_cols=27 Identities=7% Similarity=0.001 Sum_probs=17.6
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+|..|...|.+.|++++|+++|++...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 356667777777777777777776443
No 235
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=93.88 E-value=2.5 Score=33.04 Aligned_cols=129 Identities=16% Similarity=0.046 Sum_probs=97.3
Q ss_pred CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC---CCCchh
Q 046547 202 CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG---CPIGFQ 278 (343)
Q Consensus 202 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~ 278 (343)
..|+...--.|-.++...|+..+|...|.+... .-+.-|....-.+.++....+++..|...++++.+.. -.||.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qals-G~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~- 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALS-GIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG- 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc-cccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc-
Confidence 457777777889999999999999999999985 2345567778888889999999999999999988753 34443
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHH
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
.-.+-+.|...|++..|+.-|+...+.- |+...-...-..+.+.|+.++|..-+
T Consensus 163 -~Ll~aR~laa~g~~a~Aesafe~a~~~y--pg~~ar~~Y~e~La~qgr~~ea~aq~ 216 (251)
T COG4700 163 -HLLFARTLAAQGKYADAESAFEVAISYY--PGPQARIYYAEMLAKQGRLREANAQY 216 (251)
T ss_pred -hHHHHHHHHhcCCchhHHHHHHHHHHhC--CCHHHHHHHHHHHHHhcchhHHHHHH
Confidence 3456677999999999999999988753 44443333345567777776665433
No 236
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=93.62 E-value=1.6 Score=30.14 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=36.2
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+..+-+..+....+.|+..+..+.+.+|-+.+++.-|.++|+.++.|.| +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 4555556666666777777777777777777777777777777776433 22336666654
No 237
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=93.53 E-value=9.2 Score=38.48 Aligned_cols=81 Identities=12% Similarity=0.082 Sum_probs=39.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
.+.+|..+|+|.+|+.+..++.. +-.--..+--.|+.-+...++.-+|-++..+.... | .--+..|++..
T Consensus 971 Al~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-----~~av~ll~ka~ 1040 (1265)
T KOG1920|consen 971 ALKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-----EEAVALLCKAK 1040 (1265)
T ss_pred HHHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-----HHHHHHHhhHh
Confidence 35555566666666666655542 11111112244555555556555555555544321 1 12233455555
Q ss_pred cHhHHHHHHHH
Q 046547 292 EYILAGKTVMG 302 (343)
Q Consensus 292 ~~~~a~~~~~~ 302 (343)
.+++|+++-..
T Consensus 1041 ~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1041 EWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHHh
Confidence 56666665543
No 238
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.45 E-value=1 Score=37.68 Aligned_cols=76 Identities=11% Similarity=0.076 Sum_probs=41.0
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH-----cCCCCchhhHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-----KGCPIGFQGYEV 282 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 282 (343)
++..++..+...|+.+.+.+.++++.. --+-+...|-.+|.+|.+.|+...|...|+.+.+ .|+.|...+...
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~--~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIE--LDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh--cCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 344555555555666666666665553 3334555566666666666666666555555443 355555554444
Q ss_pred HHH
Q 046547 283 VVE 285 (343)
Q Consensus 283 li~ 285 (343)
...
T Consensus 233 y~~ 235 (280)
T COG3629 233 YEE 235 (280)
T ss_pred HHH
Confidence 333
No 239
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.33 E-value=2.3 Score=31.03 Aligned_cols=91 Identities=14% Similarity=0.001 Sum_probs=66.7
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH---HHHHhcc
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV---EGCLECR 291 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li---~~~~~~g 291 (343)
++...|+.+.|++.|.+... -.+-....||.=..++--+|+.++|++=+++..+..-.-+.....+.+ ..|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhC
Confidence 56778999999999998874 555677789999999999999999998888877642222333333322 2366788
Q ss_pred cHhHHHHHHHHHhHCC
Q 046547 292 EYILAGKTVMGMTERG 307 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~g 307 (343)
+-+.|..=|+..-+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 8888888888877777
No 240
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=93.30 E-value=1.3 Score=37.23 Aligned_cols=78 Identities=22% Similarity=0.125 Sum_probs=66.7
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH-----CCCCCCHHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE-----RGFIPYIKVRQK 317 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 317 (343)
.++..+++.+...|+++.+...++++.... +-+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 367889999999999999999999998853 34777999999999999999999999998765 499998887776
Q ss_pred HHHH
Q 046547 318 VVEG 321 (343)
Q Consensus 318 li~~ 321 (343)
..+.
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 6666
No 241
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.24 E-value=7.9 Score=36.88 Aligned_cols=287 Identities=13% Similarity=0.049 Sum_probs=161.8
Q ss_pred HHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHh---hhhh---hcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 34 LEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFL---SNFP---QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 34 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
...+|..+...+.+..|+++-..+...-... .+.|. .... .....+.++..-+.+... .. +..+|..+-+
T Consensus 440 ~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~--~~-~~iSy~~iA~ 515 (829)
T KOG2280|consen 440 EEVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK--LT-PGISYAAIAR 515 (829)
T ss_pred hhhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc--CC-CceeHHHHHH
Confidence 3467899999999999999999887432222 33331 1111 112234555555554321 22 3466766665
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCC----ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC-----------CccCHh
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCV----PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG-----------YHPDCG 172 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~----p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g-----------~~~~~~ 172 (343)
.++ ..|+++.|..+++.=...+-. .+..-+...+.-..+.+ +.+-...++-.+..+- .+....
T Consensus 516 ~Ay-~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~-d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~ 593 (829)
T KOG2280|consen 516 RAY-QEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESG-DTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALS 593 (829)
T ss_pred HHH-hcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcC-CchhHHHHHHHHHHHHHHHHHHHHHHhchhhhH
Confidence 444 568999998887743222210 01111223333334443 4555555554443320 111112
Q ss_pred hHHHHHH--------HHHccCcHHHHHHHHH--Hhh----hCCCCCCHhhHHHHHHHHhcCCC----------hhHHHHH
Q 046547 173 TCNYLVS--------SLCAIDQLVEAAKVLK--GMS----SAECVPDLESYSIVIGAMSTARK----------TNDAVEM 228 (343)
Q Consensus 173 ~~~~ll~--------~~~~~~~~~~a~~~~~--~m~----~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~ 228 (343)
.|.-+++ .+.+.++-..+...|. ... ..|..|+..+ .-+++.+... ..+-+++
T Consensus 594 lY~~~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~---~a~~~a~sk~~s~e~ka~ed~~kLl~l 670 (829)
T KOG2280|consen 594 LYRQFMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPALKT---AANAFAKSKEKSFEAKALEDQMKLLKL 670 (829)
T ss_pred HHHHHHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchhHHH---HHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence 2222222 1122233223332221 100 1233344332 2333433332 2233445
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 229 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
.+.+..+.|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..=+.+++..+++++-+++-+.++.
T Consensus 671 Q~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks--- 743 (829)
T KOG2280|consen 671 QRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS--- 743 (829)
T ss_pred HHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC---
Confidence 55555545555555666777777889999999998877654 47899999999999999999998888776542
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
+.-|.-++.+|.+.|+.++|.+++.+..
T Consensus 744 ---PIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 744 ---PIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred ---CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 3456778899999999999999887654
No 242
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=93.08 E-value=3.2 Score=31.92 Aligned_cols=135 Identities=13% Similarity=0.108 Sum_probs=89.4
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 191 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.+.++.+.+.+++|+...|..+++.+.+.|++... ..+.. +++-||.......+-.+.. ....+.++=-+|..
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq-~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLk 86 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQ-YHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLK 86 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHh-hcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHH
Confidence 45667777889999999999999999999986554 44444 5777787666655544433 22334444444443
Q ss_pred cCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 271 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+ . ...+..+++.+...|++-+|+++........ ......++++..+.+|...-..+++-+.+
T Consensus 87 R-L---~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 87 R-L---GTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred H-h---hhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 0 0245677888999999999999998753321 12235567888777777666666555443
No 243
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=93.06 E-value=5.8 Score=34.82 Aligned_cols=246 Identities=13% Similarity=0.039 Sum_probs=120.0
Q ss_pred cccchHHHHHHHHhcC-CCCCCCChhhHHHHHH-HHhhcCCChHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHhccCc
Q 046547 76 NHRIKVIDEMLESFIP-LRPRSRPKIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQIR--LLLSSAWLERRCQ 151 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~-~~~~~p~~~~~~~li~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~ 151 (343)
.|+...+.+|-+...+ +.. |....-.++. -...-.|+.+.|.+-|+-|.+. |..... ..|.-. .+..|.
T Consensus 97 AGda~lARkmt~~~~~llss---DqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyle-Aqr~Ga 169 (531)
T COG3898 97 AGDASLARKMTARASKLLSS---DQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLE-AQRLGA 169 (531)
T ss_pred cCchHHHHHHHHHHHhhhhc---cchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHH-HHhccc
Confidence 4445555666555432 222 3233333332 0122347777777777777652 222221 111111 233344
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC-CCCCHh--hHHHHHHHHhcC---CChhHH
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDLE--SYSIVIGAMSTA---RKTNDA 225 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~--~~~~ll~~~~~~---~~~~~a 225 (343)
.+.|.++-+..-... +--...+...+...|..|+++.|+++++.-++.. +.++.. .-..|+.+-... .+...|
T Consensus 170 reaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~A 248 (531)
T COG3898 170 REAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASA 248 (531)
T ss_pred HHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHH
Confidence 555555555554332 1123456667777777777777777777655433 334432 233444433221 122333
Q ss_pred HHHHHHHHhcCCCCCchhHH-HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 226 VEMMKEMVLNMGLMPRQGMV-IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 226 ~~~~~~m~~~~~~~p~~~~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
...-.+. .++.||...- ..-..++.+.|+..++-.+++.+=+..-.|+.. .+..+.+.| +.++.-+++..
T Consensus 249 r~~A~~a---~KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~g--dta~dRlkRa~ 319 (531)
T COG3898 249 RDDALEA---NKLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSG--DTALDRLKRAK 319 (531)
T ss_pred HHHHHHH---hhcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCC--CcHHHHHHHHH
Confidence 3332222 3556664332 233456777788888888877776644444331 222333444 34444444333
Q ss_pred HC-CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 305 ER-GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 305 ~~-g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
.. .++| +....-.+.++-...|++..|..--+..
T Consensus 320 ~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 320 KLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 22 2344 3445556667777777777776544433
No 244
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=93.03 E-value=2.6 Score=30.77 Aligned_cols=92 Identities=12% Similarity=0.031 Sum_probs=70.2
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH---HHHHHhC
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV---AAALRAN 255 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l---i~~~~~~ 255 (343)
-++...|+++.|++.|.+.... .+-....||.=..++--.|+.++|++=+++..+-.|-. +.....+. -..|-..
T Consensus 51 valaE~g~Ld~AlE~F~qal~l-~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~ 128 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCL-APERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLL 128 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHh-cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHh
Confidence 3577889999999999988764 34467889999999999999999999998888644433 33333333 3346678
Q ss_pred ccHHHHHHHHHHHHHcC
Q 046547 256 REMWKAVEMIEFLERKG 272 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g 272 (343)
|+-+.|..=|+...+.|
T Consensus 129 g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 129 GNDDAARADFEAAAQLG 145 (175)
T ss_pred CchHHHHHhHHHHHHhC
Confidence 89999999998887766
No 245
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.03 E-value=3.7 Score=35.21 Aligned_cols=153 Identities=10% Similarity=-0.095 Sum_probs=100.5
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHhcCCChhHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLESYSIVIGAMSTARKTNDAVE 227 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~ 227 (343)
...+|-..++++.+. .+.|...++..=.+|...|+.+.-...+++.... +++-.+..-.....++..+|-+++|.+
T Consensus 118 ~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk 196 (491)
T KOG2610|consen 118 KHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDDAEK 196 (491)
T ss_pred cccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchhHHH
Confidence 466777777777664 5677777777778888888888888888887643 222223333344455567888888888
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC---CCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC---PIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 228 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.-++..+ --+-|...-.++.-.+--.|+..++.+++.+-....- -.-..-|....-.+...+.++.|+++|+.-+
T Consensus 197 ~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 197 QADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred HHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 8887763 2234566667777777778888888887766443211 1122334444445667788888888888644
Q ss_pred HC
Q 046547 305 ER 306 (343)
Q Consensus 305 ~~ 306 (343)
-.
T Consensus 275 ~k 276 (491)
T KOG2610|consen 275 WK 276 (491)
T ss_pred HH
Confidence 33
No 246
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=93.01 E-value=1.1 Score=33.35 Aligned_cols=83 Identities=12% Similarity=-0.024 Sum_probs=52.5
Q ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC-CCHHHHHHH
Q 046547 242 QGMVIKVAAALRANREMWKAVEMIEFLERKG--CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI-PYIKVRQKV 318 (343)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~l 318 (343)
...|+.-.. ..+.|++++|.+.|+.+...- -.-....--.|+.+|.+.|++++|...+++.++..-. |+ .-|-..
T Consensus 11 ~~ly~~a~~-~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y 88 (142)
T PF13512_consen 11 QELYQEAQE-ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYY 88 (142)
T ss_pred HHHHHHHHH-HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHH
Confidence 344544444 457788999999999887641 1112234456788888999999999999888775322 22 335455
Q ss_pred HHHHhccC
Q 046547 319 VEGLAGVG 326 (343)
Q Consensus 319 i~~~~~~g 326 (343)
+.+++.-.
T Consensus 89 ~~gL~~~~ 96 (142)
T PF13512_consen 89 MRGLSYYE 96 (142)
T ss_pred HHHHHHHH
Confidence 55555443
No 247
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.85 E-value=0.32 Score=25.84 Aligned_cols=31 Identities=19% Similarity=0.190 Sum_probs=22.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 313 KVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
.+|..+...|...|++++|+..|++..+++|
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566777777788888888888887777654
No 248
>PRK15331 chaperone protein SicA; Provisional
Probab=92.67 E-value=2.6 Score=32.19 Aligned_cols=94 Identities=10% Similarity=-0.055 Sum_probs=64.1
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
.|..--. .+ ..|++++|..+|.-+.-.+ |...-|..=+.++++..+++++|...|......+ .-|+..+-..-.+
T Consensus 40 iY~~Ay~-~y-~~Gk~~eA~~~F~~L~~~d--~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC 114 (165)
T PRK15331 40 LYAHAYE-FY-NQGRLDEAETFFRFLCIYD--FYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQC 114 (165)
T ss_pred HHHHHHH-HH-HCCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHH
Confidence 3444443 34 4588999999988877633 4444455556666777778888888887765544 2344445556678
Q ss_pred HHccCcHHHHHHHHHHhhh
Q 046547 181 LCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~ 199 (343)
+...|+.+.|.+.|+....
T Consensus 115 ~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 115 QLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHhCCHHHHHHHHHHHHh
Confidence 8888899999888887776
No 249
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.66 E-value=0.87 Score=38.40 Aligned_cols=105 Identities=12% Similarity=0.100 Sum_probs=73.7
Q ss_pred hcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc---CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 046547 128 RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204 (343)
Q Consensus 128 ~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~---g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 204 (343)
..|......+...++... ....+++.+...+-.+... -..|+...| .+++.+ ..-++++++.++..-.+.|+-|
T Consensus 57 ~~g~~~s~~~Vd~~V~v~-~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irll-lky~pq~~i~~l~npIqYGiF~ 133 (418)
T KOG4570|consen 57 ERGLPVSSLTVDRLVDVI-SSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRLL-LKYDPQKAIYTLVNPIQYGIFP 133 (418)
T ss_pred hcCCCcceeehhhhhhcc-ccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHHH-HccChHHHHHHHhCcchhcccc
Confidence 445555666666666543 3234677788777666532 123333222 233333 3456779999999999999999
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
|..+++.+|+.+.+.++..+|.++.-.|..+
T Consensus 134 dqf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 134 DQFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred chhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 9999999999999999999999988887754
No 250
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=92.59 E-value=7.7 Score=35.27 Aligned_cols=153 Identities=9% Similarity=-0.073 Sum_probs=101.0
Q ss_pred CchhHHHHHHHHH-HhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 046547 150 CQSQSVADILLEM-KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228 (343)
Q Consensus 150 ~~~~~a~~~~~~m-~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 228 (343)
++++++.++...- .-..+ +..-.+.++..+-+.|..+.|+++-.+-. .-.....+.|+++.|.++
T Consensus 275 ~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~~ 340 (443)
T PF04053_consen 275 GDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALEI 340 (443)
T ss_dssp T-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHHH
T ss_pred CChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHHH
Confidence 4688777776511 11112 24558889999999999999988765432 224556678999999877
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 229 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
.++. ++...|..|-....+.|+++.|.+.|.+.. -|..|+--|...|+.+...++.+....+|-
T Consensus 341 a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 341 AKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp CCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 5543 366789999999999999999999998653 355677778889998888888887777662
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
++..+.++.-.|+.++..+++.+-
T Consensus 405 ------~n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 405 ------INIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp ------HHHHHHHHHHHT-HHHHHHHHHHT
T ss_pred ------HHHHHHHHHHcCCHHHHHHHHHHc
Confidence 455566667777777777776653
No 251
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.56 E-value=3.9 Score=31.56 Aligned_cols=139 Identities=12% Similarity=0.105 Sum_probs=89.6
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhh-HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchh-HHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLES-YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG-MVIK 247 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~ 247 (343)
+...|..-+. +.+.+..++|+.-|.++.+.|...-... ---.-......|+...|...|+++-.. .-.|-.. -.--
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d-t~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD-TSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc-CCCcchhhHHHH
Confidence 3455655554 3567888999999999998775432211 112234456789999999999999864 3333222 1122
Q ss_pred HH--HHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC
Q 046547 248 VA--AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP 310 (343)
Q Consensus 248 li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p 310 (343)
|= ..+..+|.++....-.+-+-..|-+.-...-..|--+-.+.|++.+|.+.|..+.+....|
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap 200 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP 200 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence 22 2355778888887777766554433333344566666778999999999999987765555
No 252
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.56 E-value=0.24 Score=28.41 Aligned_cols=28 Identities=14% Similarity=0.087 Sum_probs=15.7
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
++..+..+|...|++++|+++|++..+.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3444555556666666666666555544
No 253
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.42 E-value=8.3 Score=35.04 Aligned_cols=74 Identities=14% Similarity=0.063 Sum_probs=50.3
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHH
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVA 249 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li 249 (343)
..+-.++.+.|+.++|.+.|++|.+..-. -+..+...|+.++...+...++..++.+..+ ...+. -...|+..+
T Consensus 263 rRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD-i~lpkSAti~YTaAL 338 (539)
T PF04184_consen 263 RRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD-ISLPKSATICYTAAL 338 (539)
T ss_pred HHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc-ccCCchHHHHHHHHH
Confidence 44556667789999999999988764321 2344667788999999999999988888753 22222 234466544
No 254
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=92.34 E-value=10 Score=35.96 Aligned_cols=60 Identities=12% Similarity=0.140 Sum_probs=37.3
Q ss_pred hHHHHH--HHHHhcccHhHHHHHHHHHhHC-CCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 279 GYEVVV--EGCLECREYILAGKTVMGMTER-GFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 279 ~~~~li--~~~~~~g~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
.|.-+| +--...|.++.|++.--.+.+- ++.|....|+.|.-+-|....+...-+.|-++
T Consensus 1021 AyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~eiySllALaaca~raFGtCSKAfmkL 1083 (1189)
T KOG2041|consen 1021 AYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPAEIYSLLALAACAVRAFGTCSKAFMKL 1083 (1189)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHHHHHHHHHHHHhhhhhhhhhHHHHHHH
Confidence 444444 4456678888888766555543 56777888887777666655554444444333
No 255
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=2 Score=37.65 Aligned_cols=126 Identities=13% Similarity=0.040 Sum_probs=86.1
Q ss_pred HHHHHhcCCChhHHHHHHHHHHh----cCCCCCc---------hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVL----NMGLMPR---------QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~----~~~~~p~---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
--+.|.+.|++..|..-|+.... ..+..+. ..++..+.-++.+.+++..|++.-+...+.+ ++|..
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~K 292 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVK 292 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchh
Confidence 35678899999999999988663 1233332 4567888889999999999999999888743 22333
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHH-HHHHHhccCChh-HHHHHHHHHHh
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK-VVEGLAGVGEWK-LATVVRQRFAE 340 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~-~a~~~~~~m~~ 340 (343)
..=.=-++|...|+++.|...|+++.+. .|+-...+. |+..--+..+.. ...++|..|-.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3333356788999999999999998864 465444443 443333344333 34677777754
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.30 E-value=3.3 Score=31.51 Aligned_cols=70 Identities=17% Similarity=0.055 Sum_probs=38.3
Q ss_pred cccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccC
Q 046547 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 150 (343)
.+....++.+++.+..++|..|...++...+. . ..|+|.+|..+|+++.+.+ |....-..|+..+....+
T Consensus 23 ~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~--i-~r~~w~dA~rlLr~l~~~~--~~~p~~kALlA~CL~~~~ 92 (160)
T PF09613_consen 23 LGDPDDAEALLDALRVLRPEFPELDLFDGWLH--I-VRGDWDDALRLLRELEERA--PGFPYAKALLALCLYALG 92 (160)
T ss_pred cCChHHHHHHHHHHHHhCCCchHHHHHHHHHH--H-HhCCHHHHHHHHHHHhccC--CCChHHHHHHHHHHHHcC
Confidence 33555566666666556666666666666663 2 3366777777777765543 333333444443334333
No 257
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=92.14 E-value=11 Score=35.57 Aligned_cols=22 Identities=9% Similarity=-0.011 Sum_probs=13.2
Q ss_pred HHHHhcccHhHHHHHHHHHhHC
Q 046547 285 EGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.+|.+.|+-.+|.++++++...
T Consensus 825 kAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 825 KAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred HHHHHhcchHHHHHHHHHhhhh
Confidence 3455666666666666666443
No 258
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.01 E-value=4.6 Score=31.16 Aligned_cols=136 Identities=13% Similarity=0.060 Sum_probs=79.2
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh-hHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG-TCNY 176 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-~~~~ 176 (343)
+...|..-+. +++.+..++|+..|.++.+.|...-+..-..-...+....++...|...|++.-.....|-.. -...
T Consensus 58 sgd~flaAL~--lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK--LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH--HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 3456666665 445566788888888887766553322222222222223345777777888776654444332 1122
Q ss_pred HHH--HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 177 LVS--SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 177 ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
|=. .+...|.++.+..-.+-+-..+-+.-...-.+|--+-.+.|++.+|.++|..+..+
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 222 23457777777777776655544333444456666667778888888888877764
No 259
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=91.94 E-value=2.7 Score=28.79 Aligned_cols=63 Identities=13% Similarity=0.126 Sum_probs=37.3
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+.-++.+-+..+....+.|+..+..+.++||-+.+++.-|.++|+.++.|.| .+...|..+++
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHHH
Confidence 3444555555666666666666667777777777777777777766664322 23345555543
No 260
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.80 E-value=6.6 Score=32.58 Aligned_cols=97 Identities=8% Similarity=-0.024 Sum_probs=63.8
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC---chhHHHHHHHHHHhCccHHHHHHHHHHHHHc-CCCCc-hhhHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERK-GCPIG-FQGYE 281 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~-~~~~~ 281 (343)
..|+.-+..+ +.|++..|..-|..... +.+- ....+-.|-+++...|+++.|-.+|..+.+. +-.|. +..+-
T Consensus 143 ~~Y~~A~~~~-ksgdy~~A~~~F~~fi~--~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdall 219 (262)
T COG1729 143 KLYNAALDLY-KSGDYAEAEQAFQAFIK--KYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHH-HcCCHHHHHHHHHHHHH--cCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHH
Confidence 3577666544 55668888888888775 3322 2334667778888888888888888887753 21221 23444
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 282 VVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
-|-....+.|+.++|..+|.++.++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 5555677788888888888887765
No 261
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=91.80 E-value=0.51 Score=24.88 Aligned_cols=30 Identities=13% Similarity=0.102 Sum_probs=21.2
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
.+..+-..|...|++++|++.|++..++.+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 455667777788888888888887777653
No 262
>PRK15331 chaperone protein SicA; Provisional
Probab=91.75 E-value=4.7 Score=30.80 Aligned_cols=87 Identities=10% Similarity=0.053 Sum_probs=48.3
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
+...|++++|..+|.-+.. .+. -+..-+..|-.++-..+++++|...|......+. -|...+-..-.+|...|+.+.
T Consensus 47 ~y~~Gk~~eA~~~F~~L~~-~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~ 123 (165)
T PRK15331 47 FYNQGRLDEAETFFRFLCI-YDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAK 123 (165)
T ss_pred HHHCCCHHHHHHHHHHHHH-hCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHH
Confidence 4456677777777766654 121 2233345555556666677777776665544322 122333334555666677777
Q ss_pred HHHHHHHHhH
Q 046547 296 AGKTVMGMTE 305 (343)
Q Consensus 296 a~~~~~~m~~ 305 (343)
|...|+...+
T Consensus 124 A~~~f~~a~~ 133 (165)
T PRK15331 124 ARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHh
Confidence 7776666555
No 263
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.63 E-value=9.2 Score=33.85 Aligned_cols=186 Identities=10% Similarity=-0.052 Sum_probs=98.9
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH--HHccCcHHHHHHHHHHhhhCCCCCCHhh--
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS--LCAIDQLVEAAKVLKGMSSAECVPDLES-- 208 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~~~~~~-- 208 (343)
|.-.+|..+-.-++-..++.++|..+-....+.. + ...+..++++ +...++.+.|...|.+-...+ |+-..
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~-~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--A-TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--c-chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHH
Confidence 3334444444333334445677766655554421 1 2334444544 334677888888888776644 33221
Q ss_pred -HHHH----------HHHHhcCCChhHHHHHHHHHHhc--CCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC
Q 046547 209 -YSIV----------IGAMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 209 -~~~l----------l~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 275 (343)
-... -+-..+.|++..|.+.|.+...- .++.|+...|-....+..+.|+.++|+.--++..+ +.|
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~ 318 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDS 318 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCH
Confidence 1111 12345677888888888877620 13444555666666667777888888776666554 222
Q ss_pred chhhHHHHHH--HHHhcccHhHHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccC
Q 046547 276 GFQGYEVVVE--GCLECREYILAGKTVMGMTERGFIP-YIKVRQKVVEGLAGVG 326 (343)
Q Consensus 276 ~~~~~~~li~--~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g 326 (343)
......+.+ ++.-.++|++|.+-++...+..-.+ ...++.....++-++.
T Consensus 319 -syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkkSk 371 (486)
T KOG0550|consen 319 -SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKKSK 371 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhh
Confidence 122222222 2445667777777777665543222 2344444444444433
No 264
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=91.48 E-value=4.6 Score=30.08 Aligned_cols=75 Identities=9% Similarity=0.028 Sum_probs=39.3
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
..+.|++++|.+.|+.+..+.-..| ....--.++.+|.+.+++++|...+++.++..-.-...-|...+.|++.-
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~~ 95 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSYY 95 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 3455666667666666664311111 22334455666666777777776666666533211123455555554443
No 265
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.96 E-value=4.6 Score=38.84 Aligned_cols=136 Identities=9% Similarity=0.070 Sum_probs=72.3
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
+.|++++|..-|-+-... +.| ..+|.-|....+ ...-..+++.+.+.|+. +...-+.||.+|.+.++.++-.
T Consensus 380 ~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kfLdaq~-IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~ 451 (933)
T KOG2114|consen 380 GKGDFDEATDQYIETIGF-LEP-----SEVIKKFLDAQR-IKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLT 451 (933)
T ss_pred hcCCHHHHHHHHHHHccc-CCh-----HHHHHHhcCHHH-HHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHH
Confidence 447777776666554331 111 223444444432 45555667777766643 3455566777777777777766
Q ss_pred HHHHHhhhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 192 KVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 192 ~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+..+... .|.. .| ....+..+-+.+-.++|..+-..... +......++ -..+++++|.+.+..+
T Consensus 452 efI~~~~-~g~~~fd---~e~al~Ilr~snyl~~a~~LA~k~~~------he~vl~ill---e~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 452 EFISKCD-KGEWFFD---VETALEILRKSNYLDEAELLATKFKK------HEWVLDILL---EDLHNYEEALRYISSL 516 (933)
T ss_pred HHHhcCC-Ccceeee---HHHHHHHHHHhChHHHHHHHHHHhcc------CHHHHHHHH---HHhcCHHHHHHHHhcC
Confidence 6665544 3321 12 23445555556666666555444321 233333333 3456677777777654
No 266
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=90.85 E-value=6.4 Score=34.60 Aligned_cols=124 Identities=14% Similarity=-0.022 Sum_probs=85.6
Q ss_pred HHHHHccCcHHHHHHHHHHhhhC-----CCC---------CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchh
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSA-----ECV---------PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG 243 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~-----~~~---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~ 243 (343)
-+.|.+.|++..|..-|++.... +.. .-..++..+.-++.+.+++.+|++..+...+ --+++.-
T Consensus 215 Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe--~~~~N~K 292 (397)
T KOG0543|consen 215 GNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLE--LDPNNVK 292 (397)
T ss_pred hhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHh--cCCCchh
Confidence 35678888888888887775431 111 1234677888899999999999999999885 3345555
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHH-HHHHHHhcccHh-HHHHHHHHHhH
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV-VVEGCLECREYI-LAGKTVMGMTE 305 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~-li~~~~~~g~~~-~a~~~~~~m~~ 305 (343)
..--=-.+|...|+++.|+..|..+.+ +.|+...-+. |+..--+..+.. ...++|..|-.
T Consensus 293 ALyRrG~A~l~~~e~~~A~~df~ka~k--~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 293 ALYRRGQALLALGEYDLARDDFQKALK--LEPSNKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 554556788889999999999999988 6676655443 444333444433 34677777754
No 267
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.83 E-value=6.1 Score=30.84 Aligned_cols=95 Identities=15% Similarity=0.058 Sum_probs=51.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHHc---CCCCchhhHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERK---GCPIGFQGYE 281 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~ 281 (343)
..+..+..-|++.|+.+.|.+.|..+.+. ...|. ...+-.+|+.....+++..+...+.+.... |..++...--
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 45666667777777777777777776652 33333 233455666666667777776666655432 2222222211
Q ss_pred HHHHH--HHhcccHhHHHHHHHH
Q 046547 282 VVVEG--CLECREYILAGKTVMG 302 (343)
Q Consensus 282 ~li~~--~~~~g~~~~a~~~~~~ 302 (343)
....+ +...|++.+|-+.|-+
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~ 138 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLD 138 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHc
Confidence 22222 3345566666665543
No 268
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.56 E-value=13 Score=33.79 Aligned_cols=153 Identities=9% Similarity=0.035 Sum_probs=98.3
Q ss_pred CCChHHHHHHHHHHH-hcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 113 LHPLPLALAILQRTL-RSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~-~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
.++++++.++...-. -..++ ..-.+.+++. .+..|..+.|+++-.+-. .=.+...+.|+++.|.
T Consensus 274 ~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~f-L~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~ 338 (443)
T PF04053_consen 274 RGDFEEVLRMIAASNLLPNIP--KDQGQSIARF-LEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL 338 (443)
T ss_dssp TT-HHH-----HHHHTGGG----HHHHHHHHHH-HHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred cCChhhhhhhhhhhhhcccCC--hhHHHHHHHH-HHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence 488999998886211 11122 3335666654 555556888877654321 1234466889999998
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
++-++. .+...|..|-+...+.|+++-|.+.|.+... |..|+-.|.-.|+.+.-.++.+.....
T Consensus 339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d----------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKD----------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC----------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 665433 3677999999999999999999999988652 678888889999998888888877765
Q ss_pred CCCCchhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 272 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
| -++....++.-.|+.++..+++.+
T Consensus 403 ~------~~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 403 G------DINIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp T-------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred c------CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5 245566667778888888887763
No 269
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.37 E-value=16 Score=34.44 Aligned_cols=180 Identities=14% Similarity=0.053 Sum_probs=101.4
Q ss_pred hHHHHHHHHHHhcCCccCHhhH-HHHHHH-HHccCcHHHHHHHHHHhhh-------CCCCCCHhhHHHHHHHHhcCC---
Q 046547 153 QSVADILLEMKSIGYHPDCGTC-NYLVSS-LCAIDQLVEAAKVLKGMSS-------AECVPDLESYSIVIGAMSTAR--- 220 (343)
Q Consensus 153 ~~a~~~~~~m~~~g~~~~~~~~-~~ll~~-~~~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~--- 220 (343)
..+.++++...+.|..-..... .....+ ++...+++.|+..|+...+ .| +.....-+-.+|.+..
T Consensus 229 ~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~ 305 (552)
T KOG1550|consen 229 SEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVE 305 (552)
T ss_pred hHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCc
Confidence 4577777777776632211111 112223 4566788888888888766 44 2334455566665543
Q ss_pred --ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh-CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH--HhcccHhH
Q 046547 221 --KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA-NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC--LECREYIL 295 (343)
Q Consensus 221 --~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~--~~~g~~~~ 295 (343)
+.+.|..++..... .|. |+....-..+.-... ..+..+|.++|......|..+-. -+-.++... .-..+...
T Consensus 306 ~~d~~~A~~~~~~aA~-~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~-~~la~~y~~G~gv~r~~~~ 382 (552)
T KOG1550|consen 306 KIDYEKALKLYTKAAE-LGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAGHILAI-YRLALCYELGLGVERNLEL 382 (552)
T ss_pred cccHHHHHHHHHHHHh-cCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHcCChHHH-HHHHHHHHhCCCcCCCHHH
Confidence 55668888888775 343 444333333322222 35678888888888887764321 221222111 13346778
Q ss_pred HHHHHHHHhHCCCCCC-HHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 296 AGKTVMGMTERGFIPY-IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
|..++++..+.| .|- .... ..+..+.. +..+.+.-.+..+.++
T Consensus 383 A~~~~k~aA~~g-~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~ 426 (552)
T KOG1550|consen 383 AFAYYKKAAEKG-NPSAAYLL-GAFYEYGV-GRYDTALALYLYLAEL 426 (552)
T ss_pred HHHHHHHHHHcc-ChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHh
Confidence 888888888888 333 3322 23334444 7777777766666554
No 270
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=90.37 E-value=0.7 Score=25.08 Aligned_cols=26 Identities=8% Similarity=-0.176 Sum_probs=17.5
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
+|+.|-..|.+.|++++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 35666777777777777777777743
No 271
>PRK11906 transcriptional regulator; Provisional
Probab=90.20 E-value=14 Score=33.42 Aligned_cols=149 Identities=11% Similarity=0.015 Sum_probs=80.0
Q ss_pred ChHHHHHHHHHHH-hcCCCccHHH-HHHHHHHHHhc--------cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc
Q 046547 115 PLPLALAILQRTL-RSGCVPVPQI-RLLLSSAWLER--------RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184 (343)
Q Consensus 115 ~~~~a~~~~~~m~-~~~~~p~~~~-~~~li~~~~~~--------~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 184 (343)
+.+.|+.+|.+.. ...+.|+-.. |..+-.++... .....+|.+.-+...+.+ .-|+.....+-.+..-.
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4567888898887 2235565433 32222111111 112234555555555543 34555555565656677
Q ss_pred CcHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHH
Q 046547 185 DQLVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
++++.|...|++....+ || ..+|...-..+.-+|+.++|.+.+++..+-+-...-.......+..|+..+ .+.|..
T Consensus 352 ~~~~~a~~~f~rA~~L~--Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~ 428 (458)
T PRK11906 352 GQAKVSHILFEQAKIHS--TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIK 428 (458)
T ss_pred cchhhHHHHHHHHhhcC--CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHH
Confidence 77888888888876643 44 233333333445578888888888885432111112222333344555555 666666
Q ss_pred HHHH
Q 046547 264 MIEF 267 (343)
Q Consensus 264 ~~~~ 267 (343)
++-+
T Consensus 429 ~~~~ 432 (458)
T PRK11906 429 LYYK 432 (458)
T ss_pred HHhh
Confidence 6653
No 272
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.15 E-value=9.3 Score=31.35 Aligned_cols=79 Identities=11% Similarity=-0.001 Sum_probs=44.0
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
++....++++|...+.+..+. ..-+. .+.++ + +.++.|.-+.++|.+. .--+..|+.-...|..+|.++
T Consensus 40 afRnAk~feKakdcLlkA~~~-yEnnr----slfhA-A---KayEqaamLake~~kl--sEvvdl~eKAs~lY~E~Gspd 108 (308)
T KOG1585|consen 40 AFRNAKKFEKAKDCLLKASKG-YENNR----SLFHA-A---KAYEQAAMLAKELSKL--SEVVDLYEKASELYVECGSPD 108 (308)
T ss_pred HHHhhccHHHHHHHHHHHHHH-HHhcc----cHHHH-H---HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHhCCcc
Confidence 677778888888877776531 11111 11222 1 1245555566666542 222345666667777777777
Q ss_pred HHHHHHHHhh
Q 046547 189 EAAKVLKGMS 198 (343)
Q Consensus 189 ~a~~~~~~m~ 198 (343)
.|-..+++.-
T Consensus 109 tAAmaleKAa 118 (308)
T KOG1585|consen 109 TAAMALEKAA 118 (308)
T ss_pred hHHHHHHHHH
Confidence 7666665543
No 273
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.01 E-value=0.9 Score=23.96 Aligned_cols=29 Identities=14% Similarity=0.110 Sum_probs=21.1
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+|..+-..|...|++++|.+.|++..+++
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45666677777788888888777777665
No 274
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=89.97 E-value=19 Score=34.53 Aligned_cols=90 Identities=10% Similarity=0.034 Sum_probs=45.3
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC-
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN- 255 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~- 255 (343)
....+.-.|+++.|.+.+-+ ..+...+.+.+.+.+..|.-.+-.+... ..+.....-.|...-+..||..|++.
T Consensus 264 Yf~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 264 YFQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp HHHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred HHHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Confidence 44567778999999988876 3345567777877777665443333322 22221001111125678888888864
Q ss_pred --ccHHHHHHHHHHHHHc
Q 046547 256 --REMWKAVEMIEFLERK 271 (343)
Q Consensus 256 --~~~~~a~~~~~~m~~~ 271 (343)
.++.+|.+.+--+...
T Consensus 339 ~~td~~~Al~Y~~li~~~ 356 (613)
T PF04097_consen 339 EITDPREALQYLYLICLF 356 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS
T ss_pred hccCHHHHHHHHHHHHHc
Confidence 4778888887766543
No 275
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=89.81 E-value=3.6 Score=32.14 Aligned_cols=97 Identities=13% Similarity=-0.025 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch--hhHHHHHHHHHhcccHhHHHHHHHHHhHC---CCCCCHHHHH
Q 046547 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF--QGYEVVVEGCLECREYILAGKTVMGMTER---GFIPYIKVRQ 316 (343)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g~~p~~~~~~ 316 (343)
...+..+...|++.|+.+.|.+.|.++.+....|.. ..+-.+|+.....|++..+.....+.... |-.++...--
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrl 115 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRL 115 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHH
Confidence 466889999999999999999999999987655543 35567888899999999999998887654 3323333322
Q ss_pred HHHHH--HhccCChhHHHHHHHHH
Q 046547 317 KVVEG--LAGVGEWKLATVVRQRF 338 (343)
Q Consensus 317 ~li~~--~~~~g~~~~a~~~~~~m 338 (343)
....+ +...|++..|-+.|-..
T Consensus 116 k~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 116 KVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHHHHHHHHhchHHHHHHHHHcc
Confidence 33343 34578999998887553
No 276
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=89.80 E-value=4.3 Score=30.39 Aligned_cols=52 Identities=23% Similarity=0.200 Sum_probs=32.5
Q ss_pred cccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcC
Q 046547 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG 130 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~ 130 (343)
......++.+++.+.-+.|..|...++...|. . ..|+|++|..+|++..+.+
T Consensus 23 ~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~--i-~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 23 SADPYDAQAMLDALRVLRPNLKELDMFDGWLL--I-ARGNYDEAARILRELLSSA 74 (153)
T ss_pred cCCHHHHHHHHHHHHHhCCCccccchhHHHHH--H-HcCCHHHHHHHHHhhhccC
Confidence 44455666666666666666666666666663 2 3467777777777776554
No 277
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=89.68 E-value=1.5 Score=24.97 Aligned_cols=26 Identities=4% Similarity=-0.187 Sum_probs=12.5
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
..+-..|...|++++|.++|++..+.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 33444455555555555555554443
No 278
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=89.67 E-value=0.074 Score=39.89 Aligned_cols=120 Identities=12% Similarity=0.053 Sum_probs=80.1
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
.++..+.+.+.++....+++.+..+ +...+....+.++..|++.+..++..++++. .+..-...+++.|.+.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~-~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKE-NKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHT-STC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhc-ccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 4678888889999999999999964 6566788899999999999877888777771 1223334577888899
Q ss_pred ccHhHHHHHHHHHhHCC--CC--CCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 291 REYILAGKTVMGMTERG--FI--PYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~g--~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
|.+++|..++.++.... +. -...-+...++.+.+.++.+-...+.+..
T Consensus 84 ~l~~~a~~Ly~~~~~~~~al~i~~~~~~~~~a~e~~~~~~~~~l~~~l~~~~ 135 (143)
T PF00637_consen 84 GLYEEAVYLYSKLGNHDEALEILHKLKDYEEAIEYAKKVDDPELWEQLLKYC 135 (143)
T ss_dssp TSHHHHHHHHHCCTTHTTCSSTSSSTHCSCCCTTTGGGCSSSHHHHHHHHHH
T ss_pred chHHHHHHHHHHcccHHHHHHHHHHHccHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 99999999888764332 11 12234444555555555544444444433
No 279
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=89.51 E-value=0.91 Score=25.20 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=16.5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 313 KVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.+++.|...|...|++++|..++++..+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4555666666666666666666666544
No 280
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=89.44 E-value=3.9 Score=28.03 Aligned_cols=45 Identities=16% Similarity=0.224 Sum_probs=22.4
Q ss_pred HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 224 DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 224 ~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
++.+-++.+.. ..+.|++....+-+++|-+-+++..|.++++-.+
T Consensus 25 e~rr~mN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK 69 (103)
T cd00923 25 ELRRGLNNLFG-YDLVPEPKVIEAALRACRRVNDFALAVRILEAIK 69 (103)
T ss_pred HHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 34444444443 3455555555555555555555555555555444
No 281
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=89.25 E-value=4.8 Score=27.91 Aligned_cols=77 Identities=9% Similarity=0.065 Sum_probs=50.0
Q ss_pred HHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 046547 244 MVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321 (343)
Q Consensus 244 ~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 321 (343)
-|++=-..|.... +..+..+-++.+....+.|++....+.+++|.+.+++..|.++|+-.+.+- .+....|..+++-
T Consensus 10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqE 88 (108)
T PF02284_consen 10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQE 88 (108)
T ss_dssp HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHH
T ss_pred HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHH
Confidence 3444444444433 444777777777777888999999999999999999999999999887662 2223377776654
No 282
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=89.02 E-value=28 Score=35.31 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=26.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
-.|+.-+...+++-+|-++..+...+ +.-.+..||+...|++|.++...
T Consensus 1003 ~~L~s~L~e~~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~ 1051 (1265)
T KOG1920|consen 1003 EELVSRLVEQRKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASK 1051 (1265)
T ss_pred HHHHHHHHHcccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHh
Confidence 34555555666666666666655532 22334445566666666665553
No 283
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=88.97 E-value=13 Score=31.37 Aligned_cols=85 Identities=12% Similarity=-0.048 Sum_probs=47.5
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---ccCc-------hhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQ-------SQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~-------~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
+..+.=..+.--+..++..+.-......++.+.+.++.. .+++ ..+|.++|.-+.++.-+ +.+-+.++
T Consensus 96 Yl~KPvt~ekLnraIdr~~k~ve~~~eee~~~~iscfgg~ev~~rqg~~vkWis~KA~ELFayLv~hkgk--~v~~~~~i 173 (361)
T COG3947 96 YLPKPVTPEKLNRAIDRRLKRVELTAEEESGTQISCFGGTEVVLRQGQQVKWISRKALELFAYLVEHKGK--EVTSWEAI 173 (361)
T ss_pred hccCCCCHHHHHHHHHHHhccccccchhccCeeeEeccceeeeccCCceeeehhhHHHHHHHHHHHhcCC--cccHhHHH
Confidence 444444455666666666554444455666666665431 0111 13677777777665322 34556667
Q ss_pred HHHHccCcHHHHHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLK 195 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~ 195 (343)
.++....+..+|...+.
T Consensus 174 e~lwpe~D~kka~s~lh 190 (361)
T COG3947 174 EALWPEKDEKKASSLLH 190 (361)
T ss_pred HHHccccchhhHHHHHH
Confidence 77777777777766544
No 284
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=88.78 E-value=8.2 Score=28.87 Aligned_cols=49 Identities=12% Similarity=0.119 Sum_probs=24.5
Q ss_pred HhhHHHHHHHHHccCc-HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC
Q 046547 171 CGTCNYLVSSLCAIDQ-LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA 219 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~ 219 (343)
..+|++++.+..+... ---+..+|.-|++.+.+++..-|..+|.++.+.
T Consensus 79 ~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~li~~~l~g 128 (145)
T PF13762_consen 79 NSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCLIKAALRG 128 (145)
T ss_pred cchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcC
Confidence 3445555555544443 233444555555545555555555555555444
No 285
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=88.51 E-value=11 Score=29.77 Aligned_cols=192 Identities=14% Similarity=0.044 Sum_probs=99.4
Q ss_pred HhhcCCChHHHHHHHHHHHhc-CCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH-HHHccCc
Q 046547 109 TLQSLHPLPLALAILQRTLRS-GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS-SLCAIDQ 186 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~-~~~~~~~ 186 (343)
.+...+++..+...+...... ........+......+... +....+.+.+.........+. ........ .+...|+
T Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 145 (291)
T COG0457 68 ALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEAL-GKYEEALELLEKALALDPDPD-LAEALLALGALYELGD 145 (291)
T ss_pred HHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHH-hhHHHHHHHHHHHHcCCCCcc-hHHHHHHHHHHHHcCC
Confidence 445556677777777666542 1122223333333332232 345666666666655433321 12222222 5667777
Q ss_pred HHHHHHHHHHhhhCCC--CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHH
Q 046547 187 LVEAAKVLKGMSSAEC--VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
++.|...+.+...... ......+......+...++.+.+...+..... .... ....+..+-..+...++.+.+..
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 223 (291)
T COG0457 146 YEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKLGKYEEALE 223 (291)
T ss_pred HHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHcccHHHHHH
Confidence 7777777777644211 11233333334445566677777777777663 2223 35556666666666667777777
Q ss_pred HHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 264 MIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 264 ~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.+...... .|+ ...+..+...+...+..+.+...+.+....
T Consensus 224 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 224 YYEKALEL--DPDNAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHHhh--CcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 77766553 222 223333333333555566666666665543
No 286
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=88.43 E-value=8.4 Score=30.56 Aligned_cols=79 Identities=8% Similarity=0.029 Sum_probs=36.7
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc--CCCCCchhHHHHHHHHHHhCccH
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN--MGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
+.+.|+ +.|.+.|-.+...+.--+......|..-|. ..+.+++..++....+- .+-.+|+..+.+|+..+-+.|+.
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~ 194 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNY 194 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcch
Confidence 334444 345555555555544333333333333333 44455555555554431 12234455555555555555555
Q ss_pred HHH
Q 046547 259 WKA 261 (343)
Q Consensus 259 ~~a 261 (343)
+.|
T Consensus 195 e~A 197 (203)
T PF11207_consen 195 EQA 197 (203)
T ss_pred hhh
Confidence 544
No 287
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.29 E-value=21 Score=34.68 Aligned_cols=182 Identities=8% Similarity=0.064 Sum_probs=107.5
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHH---HHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSS---AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~---~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
+...++-|+.+-+ ..+..++ +...+.. .|+...+++++|...|-+-... +.|. .+|.-|....++.
T Consensus 346 kK~ly~~Ai~LAk---~~~~d~d--~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~Ik 414 (933)
T KOG2114|consen 346 KKNLYKVAINLAK---SQHLDED--TLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIK 414 (933)
T ss_pred HhhhHHHHHHHHH---hcCCCHH--HHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHH
Confidence 3355666665543 3333333 3223332 2333345688887766655432 3332 3566677777777
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
.-..+++.+.+.|.. +...-+.|+++|.+.++.++-.++.+... + |..- .-....+..+-+.+-.++|..+-...
T Consensus 415 nLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~-g~~~--fd~e~al~Ilr~snyl~~a~~LA~k~ 489 (933)
T KOG2114|consen 415 NLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-K-GEWF--FDVETALEILRKSNYLDEAELLATKF 489 (933)
T ss_pred HHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-C-ccee--eeHHHHHHHHHHhChHHHHHHHHHHh
Confidence 888888888888874 45556778899999998888777766654 2 3221 11345667777777777777766654
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHH
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQK 317 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~ 317 (343)
.. ....... .+-..|++++|+++++.+--....+....|..
T Consensus 490 ~~-----he~vl~i---lle~~~ny~eAl~yi~slp~~e~l~~l~kyGk 530 (933)
T KOG2114|consen 490 KK-----HEWVLDI---LLEDLHNYEEALRYISSLPISELLRTLNKYGK 530 (933)
T ss_pred cc-----CHHHHHH---HHHHhcCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 32 2223333 34467889999999886632222233444443
No 288
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.22 E-value=0.23 Score=37.20 Aligned_cols=131 Identities=10% Similarity=0.014 Sum_probs=93.9
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
..++..+.+.+.++....+++.+...+...+....+.++..|++.++.++..++++... + .-...++..|.+
T Consensus 11 ~~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~---~-----yd~~~~~~~c~~ 82 (143)
T PF00637_consen 11 SEVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSN---N-----YDLDKALRLCEK 82 (143)
T ss_dssp CCCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSS---S-----S-CTHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccccc---c-----cCHHHHHHHHHh
Confidence 34677888889999999999999987766778999999999999998899998888321 2 333567888889
Q ss_pred CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.|.+++|.-++.++....-. +..+...++++.|.++..+ .++...|..++..+...+..
T Consensus 83 ~~l~~~a~~Ly~~~~~~~~a---------l~i~~~~~~~~~a~e~~~~------~~~~~l~~~l~~~~l~~~~~ 141 (143)
T PF00637_consen 83 HGLYEEAVYLYSKLGNHDEA---------LEILHKLKDYEEAIEYAKK------VDDPELWEQLLKYCLDSKPF 141 (143)
T ss_dssp TTSHHHHHHHHHCCTTHTTC---------SSTSSSTHCSCCCTTTGGG------CSSSHHHHHHHHHHCTSTCT
T ss_pred cchHHHHHHHHHHcccHHHH---------HHHHHHHccHHHHHHHHHh------cCcHHHHHHHHHHHHhcCcc
Confidence 99999998888865432111 1113456677777754442 24578889999888877654
No 289
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=88.02 E-value=5.6 Score=37.94 Aligned_cols=26 Identities=8% Similarity=0.199 Sum_probs=16.8
Q ss_pred hhHHHHHHH-----HHhcccHhHHHHHHHHH
Q 046547 278 QGYEVVVEG-----CLECREYILAGKTVMGM 303 (343)
Q Consensus 278 ~~~~~li~~-----~~~~g~~~~a~~~~~~m 303 (343)
.|+..|++. +...|+++.|++.++++
T Consensus 501 ~t~~~Ll~L~~ff~~~~~g~~~~AL~~i~~L 531 (613)
T PF04097_consen 501 ETFQLLLDLAEFFDLYHAGQYEQALDIIEKL 531 (613)
T ss_dssp HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHhC
Confidence 355555443 56788899998887765
No 290
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=87.42 E-value=20 Score=31.69 Aligned_cols=249 Identities=16% Similarity=0.084 Sum_probs=123.2
Q ss_pred ccCcchHHHHHHHchhcCCCCChHHH-hhhh-hhcccchHHHHHHHHhcCCCCCCCC-hhhHHHHHHHHhhcCCChHHHH
Q 046547 44 AKDYQQIPELLGSFEEACQNPNPFSF-LSNF-PQNHRIKVIDEMLESFIPLRPRSRP-KIAYDYLLSYTLQSLHPLPLAL 120 (343)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~p~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~ 120 (343)
.|+++.|.+-|+.|.. .|..... +..+ ....+.+.-+-..+....-.+.-|. ...+.+.+. ..|..|+|+.|+
T Consensus 133 eG~~~~Ar~kfeAMl~---dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe-~r~~~gdWd~Al 208 (531)
T COG3898 133 EGDYEDARKKFEAMLD---DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE-ARCAAGDWDGAL 208 (531)
T ss_pred cCchHHHHHHHHHHhc---ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH-HHHhcCChHHHH
Confidence 5777888888877764 2333222 1111 1111121111122211111111222 366777775 455668888888
Q ss_pred HHHHHHHhcC-CCccHHH--HHHHHHHHHh--ccCchhHHHHHHHHHHhcCCccCHhhHH-HHHHHHHccCcHHHHHHHH
Q 046547 121 AILQRTLRSG-CVPVPQI--RLLLSSAWLE--RRCQSQSVADILLEMKSIGYHPDCGTCN-YLVSSLCAIDQLVEAAKVL 194 (343)
Q Consensus 121 ~~~~~m~~~~-~~p~~~~--~~~li~~~~~--~~~~~~~a~~~~~~m~~~g~~~~~~~~~-~ll~~~~~~~~~~~a~~~~ 194 (343)
++++.-++.. +.++..- -..|+.+-.. ...+...|...-.+..+ +.||..--. .--.++.+.|++.++-+++
T Consensus 209 kLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~il 286 (531)
T COG3898 209 KLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKIL 286 (531)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHH
Confidence 8888765433 3333321 1223322111 11123334333333322 344433221 1234677788888888888
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC
Q 046547 195 KGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGC 273 (343)
Q Consensus 195 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 273 (343)
+.+=+....|+.. .+..+.+.|+.. ..=++....-...+| +...--.+..+....|++..|..--+.... .
T Consensus 287 E~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~ 358 (531)
T COG3898 287 ETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--E 358 (531)
T ss_pred HHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--h
Confidence 8887765555432 333444555532 222222221112233 344455566667777777777665554443 4
Q ss_pred CCchhhHHHHHHHH-HhcccHhHHHHHHHHHhHC
Q 046547 274 PIGFQGYEVVVEGC-LECREYILAGKTVMGMTER 306 (343)
Q Consensus 274 ~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~ 306 (343)
.|....|..|-+.- ...|+-.++...+-+....
T Consensus 359 ~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 359 APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 57777777666553 3447777777777766543
No 291
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=87.01 E-value=16 Score=30.18 Aligned_cols=66 Identities=8% Similarity=-0.069 Sum_probs=32.8
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC--ccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY--HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 200 (343)
|-...|+.-+.. .+.| ++++|.+.|+.+...-. +-...+--.++-++.+.++++.|...+++....
T Consensus 33 p~~~LY~~g~~~-L~~g-n~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 33 PASELYNEGLTE-LQKG-NYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CHHHHHHHHHHH-HhcC-CHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 334445555544 3433 46666666666653310 111233334444555666666666666665543
No 292
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=86.05 E-value=28 Score=32.00 Aligned_cols=165 Identities=10% Similarity=0.063 Sum_probs=110.3
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 177 (343)
|....-+++. .+.....+.-+..+-.+|..-| -+...|..++..|...+ .+.-..+|+++.+..+ +.....--
T Consensus 65 ~d~~l~~~~~-~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en~--n~~l~~lWer~ve~df--nDvv~~Re 137 (711)
T COG1747 65 DDSCLVTLLT-IFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKENG--NEQLYSLWERLVEYDF--NDVVIGRE 137 (711)
T ss_pred cchHHHHHHH-HhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhcC--chhhHHHHHHHHHhcc--hhHHHHHH
Confidence 4455556665 6777777788888888888755 56667788888777663 4677888888877543 34444444
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVPD-----LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
+..+...++.+++...|.+....-++.- ...|.-+...- ..+.|..+++...++.+.|..--...+.-+-.-|
T Consensus 138 La~~yEkik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 138 LADKYEKIKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHHHhchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 5555555788888888877765433211 12344443321 4567778888888877666666666777777778
Q ss_pred HhCccHHHHHHHHHHHHHc
Q 046547 253 RANREMWKAVEMIEFLERK 271 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~ 271 (343)
....++++|.+++....+.
T Consensus 216 s~~eN~~eai~Ilk~il~~ 234 (711)
T COG1747 216 SENENWTEAIRILKHILEH 234 (711)
T ss_pred ccccCHHHHHHHHHHHhhh
Confidence 8888888888888866654
No 293
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.91 E-value=26 Score=31.60 Aligned_cols=293 Identities=12% Similarity=0.049 Sum_probs=156.1
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCC----CCChHHHhhhhhhcccchHHHHHHHH----------------hcCC--
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQ----NPNPFSFLSNFPQNHRIKVIDEMLES----------------FIPL-- 92 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~----~p~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~-- 92 (343)
+..+..+-..|++.+++.+++++...=. .=++.+|..+....|+.=. -++.+. ..++
T Consensus 132 ~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrSYf-LEl~e~~s~dl~pdyYemilfY~kki~~ 210 (549)
T PF07079_consen 132 EIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRSYF-LELKESMSSDLYPDYYEMILFYLKKIHA 210 (549)
T ss_pred HHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHHHH-HHHHHhcccccChHHHHHHHHHHHHHHH
Confidence 5678888999999999999998886433 3566666553333333111 111110 0000
Q ss_pred ------CCCCCChhhHHHHHHHHhhcC-CChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhHHHHHHHHHHh
Q 046547 93 ------RPRSRPKIAYDYLLSYTLQSL-HPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKS 164 (343)
Q Consensus 93 ------~~~~p~~~~~~~li~~~~~~~-~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~a~~~~~~m~~ 164 (343)
....|-......++.+.+.-. .+..--.+++..-...-+.|+... ...++..+.+ +.+++..+-+.+..
T Consensus 211 ~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~---~~e~~~~~ce~ia~ 287 (549)
T PF07079_consen 211 FDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS---DPEQVGHFCEAIAS 287 (549)
T ss_pred HhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc---ChHHHHHHHHHHHH
Confidence 112233344444444333321 112223344444444445565332 2333333333 23455555555543
Q ss_pred cCCcc----CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh---------------------hHHH--------
Q 046547 165 IGYHP----DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE---------------------SYSI-------- 211 (343)
Q Consensus 165 ~g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---------------------~~~~-------- 211 (343)
..+.+ =..+|..++....+.++...|.+.+.-++-. .|+.. .|+.
T Consensus 288 ~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--dp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lw 365 (549)
T PF07079_consen 288 SKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--DPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLW 365 (549)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--CCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 32222 2457888888888888888887776654432 12111 1110
Q ss_pred ----------------HH---HHHhcCCC-hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh--------CccHHHHHH
Q 046547 212 ----------------VI---GAMSTARK-TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA--------NREMWKAVE 263 (343)
Q Consensus 212 ----------------ll---~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~--------~~~~~~a~~ 263 (343)
|+ .-+-+.|. -++|+++++.+.. +.|...-.-+.+.-+.+ ...+.+-..
T Consensus 366 e~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~---ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlk 442 (549)
T PF07079_consen 366 EEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQ---FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLK 442 (549)
T ss_pred HHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH---hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHH
Confidence 11 11222333 5667777777663 22322222222222222 233444555
Q ss_pred HHHHHHHcCCCCchh----hHHHHHHH--HHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 264 MIEFLERKGCPIGFQ----GYEVVVEG--CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 264 ~~~~m~~~g~~p~~~----~~~~li~~--~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
+-+-..+.|+.|-.. .-|.|-++ +...|++.++.-.-..+. .+.|++.+|..+.-++....++++|..++..
T Consensus 443 Le~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~--~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 443 LEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLT--KIAPSPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH--HhCCcHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 555566778876433 34445444 556788888876665554 3679999999999999999999999999876
Q ss_pred H
Q 046547 338 F 338 (343)
Q Consensus 338 m 338 (343)
+
T Consensus 521 L 521 (549)
T PF07079_consen 521 L 521 (549)
T ss_pred C
Confidence 4
No 294
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=85.72 E-value=15 Score=28.77 Aligned_cols=225 Identities=16% Similarity=0.048 Sum_probs=151.4
Q ss_pred CChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhc-CCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI-GYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~-g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
+....+...+.......... ....+......+...+ ....+...+...... ........+......+...++...+.
T Consensus 37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (291)
T COG0457 37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLG-RLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEAL 115 (291)
T ss_pred hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcc-cHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHH
Confidence 45666666666666544221 2445555555555654 577777777776642 33445566777777788888899999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHH-HHhcCCChhHHHHHHHHHHhcCCC--CCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIG-AMSTARKTNDAVEMMKEMVLNMGL--MPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~~--~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+.+.........+ ......... .+...|+++.|...+..... ... ......+......+...++.+.+...+...
T Consensus 116 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 193 (291)
T COG0457 116 ELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALE-LDPELNELAEALLALGALLEALGRYEEALELLEKA 193 (291)
T ss_pred HHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHh-cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHH
Confidence 9999888755443 122222333 78899999999999999853 121 123444555555567788999999999998
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.+.........+..+-..+...++++.|...+.......-. ....+..+...+...|..+++...+.+..+..
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (291)
T COG0457 194 LKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALELD 266 (291)
T ss_pred HhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 87432213567777888888999999999999988765422 24455555555557778999998888776643
No 295
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.51 E-value=23 Score=30.61 Aligned_cols=153 Identities=11% Similarity=-0.060 Sum_probs=98.5
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh----hHHHHHHHHHccCcHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG----TCNYLVSSLCAIDQLV 188 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~----~~~~ll~~~~~~~~~~ 188 (343)
.|.+.+|-..++++.+. .+.|...++..=.++...|++. .-...+++.... ..||.. .-..+--++...|-++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~-~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~ 192 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQI-GKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYD 192 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchh-hhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccch
Confidence 48888999999998874 4556666766666766776644 445555555432 133332 2233344556789999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHhCccHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG--LMPRQGMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
+|.+.-++..+.+ +.|...-.++...+--.|++.++.++..+-..... -..-..-|=-..-.+...+.++.|+++|+
T Consensus 193 dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 193 DAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 9998888877654 34667777888888889999999988777553211 11111122222334556689999999998
Q ss_pred HHH
Q 046547 267 FLE 269 (343)
Q Consensus 267 ~m~ 269 (343)
.=.
T Consensus 272 ~ei 274 (491)
T KOG2610|consen 272 REI 274 (491)
T ss_pred HHH
Confidence 644
No 296
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=85.06 E-value=25 Score=30.62 Aligned_cols=70 Identities=10% Similarity=-0.118 Sum_probs=42.9
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC---chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI---GFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
....+|..+...+.+.|.++.|...+..+...+..+ +....-.-.......|+..+|...+++.....+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~ 216 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLS 216 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhh
Confidence 345567777777778888888877777776543211 1222223344566677777777777776664433
No 297
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.96 E-value=12 Score=29.71 Aligned_cols=78 Identities=9% Similarity=0.005 Sum_probs=36.8
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc---CCCCchhhHHHHHHHHHhccc
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK---GCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~~~g~ 292 (343)
+.+.|+ +.|.+.|-.+.. .+..-|+..--.|...|. ..+.+++..++....+. +-.+|+..+..|...|.+.|+
T Consensus 117 Wsr~~d-~~A~~~fL~~E~-~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~ 193 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEG-TPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKN 193 (203)
T ss_pred hhccCc-HHHHHHHHHHcC-CCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcc
Confidence 334444 445555555553 233334444444444443 33455555555554432 224455555555555555555
Q ss_pred HhHH
Q 046547 293 YILA 296 (343)
Q Consensus 293 ~~~a 296 (343)
++.|
T Consensus 194 ~e~A 197 (203)
T PF11207_consen 194 YEQA 197 (203)
T ss_pred hhhh
Confidence 5544
No 298
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=84.82 E-value=2.7 Score=23.12 Aligned_cols=25 Identities=28% Similarity=0.284 Sum_probs=11.5
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+++.|...|...|++++|..++++.
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~a 28 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEA 28 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHH
Confidence 3444444444455555554444443
No 299
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=84.75 E-value=23 Score=29.95 Aligned_cols=198 Identities=15% Similarity=0.090 Sum_probs=106.9
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhc--------CCCccH-----HHHHHHHHHHHhccC--chhHHHHHHHHHHh
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRS--------GCVPVP-----QIRLLLSSAWLERRC--QSQSVADILLEMKS 164 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~-----~~~~~li~~~~~~~~--~~~~a~~~~~~m~~ 164 (343)
..||.-.+ .+.+..+++.|...+++..+. ...|+. .+...+..++...+. ..++|.++++.+..
T Consensus 37 ~~yn~G~~-l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~ 115 (278)
T PF08631_consen 37 VCYNIGKS-LLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLES 115 (278)
T ss_pred HHHHHHHH-HHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence 34555554 444422777776666655332 122333 445566667665432 23456777777754
Q ss_pred cCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHH---hcCCChhHHHHHHHHHHhcCCCCCc
Q 046547 165 IGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAM---STARKTNDAVEMMKEMVLNMGLMPR 241 (343)
Q Consensus 165 ~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~---~~~~~~~~a~~~~~~m~~~~~~~p~ 241 (343)
.. .-.+.+|-.-+..+.+.++.+.+.+++.+|...-. .....+..++..+ .... ...|...++.+... .+.|.
T Consensus 116 e~-~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~-~~e~~~~~~l~~i~~l~~~~-~~~a~~~ld~~l~~-r~~~~ 191 (278)
T PF08631_consen 116 EY-GNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD-HSESNFDSILHHIKQLAEKS-PELAAFCLDYLLLN-RFKSS 191 (278)
T ss_pred hC-CCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc-cccchHHHHHHHHHHHHhhC-cHHHHHHHHHHHHH-HhCCC
Confidence 42 22345666667777778999999999999987632 1334455555444 4433 35566666666653 55555
Q ss_pred hh--HHHHHHHH---HHhCc------cHHHHHHHHHHHHHc-CCCCchhhH---HHHHH----HHHhcccHhHHHHHHHH
Q 046547 242 QG--MVIKVAAA---LRANR------EMWKAVEMIEFLERK-GCPIGFQGY---EVVVE----GCLECREYILAGKTVMG 302 (343)
Q Consensus 242 ~~--~~~~li~~---~~~~~------~~~~a~~~~~~m~~~-g~~p~~~~~---~~li~----~~~~~g~~~~a~~~~~~ 302 (343)
.. .=..++.- ....+ .++...++++...+. +.+.+..+- .+|+. .+.+.+++++|.++|+-
T Consensus 192 ~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 192 EDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred hhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 53 11111111 11211 245555556643332 233333332 23332 25578899999999874
No 300
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=84.31 E-value=1.3 Score=23.73 Aligned_cols=22 Identities=9% Similarity=0.131 Sum_probs=15.8
Q ss_pred CHHHHHHHHHHHhccCChhHHH
Q 046547 311 YIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 311 ~~~~~~~li~~~~~~g~~~~a~ 332 (343)
|...|..+...|...|++++|+
T Consensus 12 n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 12 NAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred CHHHHHHHHHHHHHCcCHHhhc
Confidence 5667777777777777777765
No 301
>PRK11906 transcriptional regulator; Provisional
Probab=84.25 E-value=32 Score=31.19 Aligned_cols=159 Identities=8% Similarity=-0.006 Sum_probs=83.9
Q ss_pred hhH--HHHHHHHHcc-----CcHHHHHHHHHHhhh-CCCCCC-HhhHHHHHHHHhcC---------CChhHHHHHHHHHH
Q 046547 172 GTC--NYLVSSLCAI-----DQLVEAAKVLKGMSS-AECVPD-LESYSIVIGAMSTA---------RKTNDAVEMMKEMV 233 (343)
Q Consensus 172 ~~~--~~ll~~~~~~-----~~~~~a~~~~~~m~~-~~~~~~-~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~ 233 (343)
..| ..++.+.... ...+.|..+|.+..+ ....|+ ...|..+-.++... .+..+|.++-+...
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv 331 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS 331 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence 345 5555554441 234567777777662 223444 44555554443221 12334555555554
Q ss_pred hcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-
Q 046547 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTERGFIPY- 311 (343)
Q Consensus 234 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~- 311 (343)
+ --+-|......+-.+....++.+.|..+|++... +.||.. +|-..-....-.|+.++|.+.+++..+. .|.
T Consensus 332 e--ld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~--L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~ 405 (458)
T PRK11906 332 D--ITTVDGKILAIMGLITGLSGQAKVSHILFEQAKI--HSTDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRR 405 (458)
T ss_pred h--cCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhh--cCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchh
Confidence 3 1223455555555555666667888888877665 445543 3333333345577778888777774433 342
Q ss_pred --HHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 312 --IKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 312 --~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
.......++.|+..+ .++|+++|-+
T Consensus 406 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 432 (458)
T PRK11906 406 RKAVVIKECVDMYVPNP-LKNNIKLYYK 432 (458)
T ss_pred hHHHHHHHHHHHHcCCc-hhhhHHHHhh
Confidence 334444455666655 5666666543
No 302
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=84.16 E-value=4.7 Score=34.66 Aligned_cols=82 Identities=13% Similarity=0.027 Sum_probs=55.2
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
-+-|.+.|.+++|++.|..-. .+.| +.+++..-..+|.+...+..|..=-+..... | ...+.+|.+.+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaL----d----~~Y~KAYSRR~ 172 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIAL----D----KLYVKAYSRRM 172 (536)
T ss_pred hhhhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHh----h----HHHHHHHHHHH
Confidence 366888899999999988765 3345 7888888888899988888776544444321 1 13356677666
Q ss_pred cHhHHHHHHHHHhH
Q 046547 292 EYILAGKTVMGMTE 305 (343)
Q Consensus 292 ~~~~a~~~~~~m~~ 305 (343)
....++....+.++
T Consensus 173 ~AR~~Lg~~~EAKk 186 (536)
T KOG4648|consen 173 QARESLGNNMEAKK 186 (536)
T ss_pred HHHHHHhhHHHHHH
Confidence 66655555555543
No 303
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=84.12 E-value=3 Score=21.87 Aligned_cols=20 Identities=15% Similarity=0.033 Sum_probs=7.3
Q ss_pred HHHHHHhCccHHHHHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~ 267 (343)
+-.+|...|++++|...|++
T Consensus 7 ~g~~~~~~~~~~~A~~~~~~ 26 (34)
T PF00515_consen 7 LGNAYFQLGDYEEALEYYQR 26 (34)
T ss_dssp HHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHH
Confidence 33333333333333333333
No 304
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.22 E-value=15 Score=33.30 Aligned_cols=123 Identities=11% Similarity=-0.094 Sum_probs=71.6
Q ss_pred HhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH
Q 046547 216 MSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
-...|+.-.|.+-+....++..-.|+.....+.| +...|.++.+.+.+....+. +.....+-.++++...+.|++++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~ 375 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWRE 375 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHH
Confidence 3345666555444333333234445544444433 45667788887777765432 33445567777888888888888
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
|..+-.-|....+. +........-..-..|-+|++.-.|+++..+.
T Consensus 376 a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~ 421 (831)
T PRK15180 376 ALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLN 421 (831)
T ss_pred HHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccC
Confidence 88887777766554 33333333333444566777777777765544
No 305
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=82.93 E-value=6.5 Score=31.15 Aligned_cols=52 Identities=12% Similarity=-0.120 Sum_probs=30.4
Q ss_pred hCccHHHHHHHHHHHHHc-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 254 ANREMWKAVEMIEFLERK-GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
...+.+......+.+.+. ...|+..+|..++..+...|+.++|.++..++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 444444444433333321 3557777777777777777777777777766654
No 306
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.38 E-value=6.4 Score=25.87 Aligned_cols=46 Identities=13% Similarity=0.018 Sum_probs=21.0
Q ss_pred hCccHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcccHhHHHHH
Q 046547 254 ANREMWKAVEMIEFLERKGCPIG--FQGYEVVVEGCLECREYILAGKT 299 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~ 299 (343)
..++.++|+..|+...+.-..|. ..++..|+.+|+..|++.+++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555444322221 12444555555555555554443
No 307
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=81.99 E-value=1.8 Score=21.41 Aligned_cols=21 Identities=14% Similarity=0.098 Sum_probs=12.5
Q ss_pred HHHHHHHhccCChhHHHHHHH
Q 046547 316 QKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 316 ~~li~~~~~~g~~~~a~~~~~ 336 (343)
..+..++...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 345556666666666666554
No 308
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=81.92 E-value=19 Score=26.95 Aligned_cols=84 Identities=5% Similarity=-0.064 Sum_probs=49.2
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhccc-HhHHHHHHHHHhHCCCCCCHHHHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKG-----CPIGFQGYEVVVEGCLECRE-YILAGKTVMGMTERGFIPYIKVRQKV 318 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (343)
.|+++.-....+++.-...+++.+..-. -..+..+|++++.+..+..- --.+..+|+-|++.+.+++..-|..+
T Consensus 42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l 121 (145)
T PF13762_consen 42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL 121 (145)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4555555565666666666655553210 01244567777777765555 33455666667666677777777777
Q ss_pred HHHHhccCCh
Q 046547 319 VEGLAGVGEW 328 (343)
Q Consensus 319 i~~~~~~g~~ 328 (343)
|.++.+.-..
T Consensus 122 i~~~l~g~~~ 131 (145)
T PF13762_consen 122 IKAALRGYFH 131 (145)
T ss_pred HHHHHcCCCC
Confidence 7766655333
No 309
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.69 E-value=14 Score=29.77 Aligned_cols=78 Identities=12% Similarity=0.050 Sum_probs=49.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh-cCCCCCchhHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL-NMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~p~~~~~~~li~~ 251 (343)
|.+.-++.+.+.+++++++...++=.+.. +.|..+-..++..+|-.|++++|..-++-.-+ .....+-..+|..+|.+
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 44556677778888888888777665543 23445556677888888888888766554432 02344455666666654
No 310
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=81.56 E-value=29 Score=28.73 Aligned_cols=186 Identities=13% Similarity=0.064 Sum_probs=98.4
Q ss_pred CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcC-CCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH
Q 046547 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSG-CVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 97 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~-~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
|-...|+.-+. -+ +.|++++|.+.|+.+.... ..| ...+--.++-++.+.+ +++.|...+++..+.-.......|
T Consensus 33 p~~~LY~~g~~-~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~-~y~~A~~~~drFi~lyP~~~n~dY 109 (254)
T COG4105 33 PASELYNEGLT-EL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNG-EYDLALAYIDRFIRLYPTHPNADY 109 (254)
T ss_pred CHHHHHHHHHH-HH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHhCCCCCChhH
Confidence 45677888886 44 5599999999999998543 112 2344455566667765 799999999998765333333456
Q ss_pred HHHHHHHHcc-------CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 175 NYLVSSLCAI-------DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 175 ~~ll~~~~~~-------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
-..|.+++.. .|...+..-|..|.. +|.-|=.+.-...|..-...+... + ...=-.
T Consensus 110 ~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~------------~i~ryPnS~Ya~dA~~~i~~~~d~--L---A~~Em~ 172 (254)
T COG4105 110 AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKE------------LVQRYPNSRYAPDAKARIVKLNDA--L---AGHEMA 172 (254)
T ss_pred HHHHHHHHHhccCCccccCHHHHHHHHHHHHH------------HHHHCCCCcchhhHHHHHHHHHHH--H---HHHHHH
Confidence 6666666532 223333333333321 111111111122222221111110 0 000123
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQ---GYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
+.+-|.+.|.+..|..-+++|.+. .+-+.. ..-.+..+|...|-.++|.+.-.-+
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl 230 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVL 230 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 445567777777777777777664 222222 3334555666777766666654443
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.46 E-value=32 Score=29.17 Aligned_cols=70 Identities=17% Similarity=0.027 Sum_probs=38.7
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH-----CCCCCCHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE-----RGFIPYIKVR 315 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~ 315 (343)
.+.....|..+|.+.+|.++-+...... +.+...+-.|+..+...|+--.|.+-++.+.+ .|+..|...+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsie 356 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIE 356 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHH
Confidence 3444556666777777776666655421 22444555666667777765555555544432 2555554443
No 312
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=81.00 E-value=54 Score=31.46 Aligned_cols=195 Identities=13% Similarity=0.065 Sum_probs=110.8
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHH-hcCCCccH--HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh--
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTL-RSGCVPVP--QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG-- 172 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~-~~~~~p~~--~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~-- 172 (343)
+...|..||. .|++.++-.. +..+.|.. .++--+...+.....+++.|...+++.....-+++..
T Consensus 29 ~l~~Y~kLI~----------~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~ 98 (608)
T PF10345_consen 29 QLKQYYKLIA----------TAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDL 98 (608)
T ss_pred hHHHHHHHHH----------HHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHH
Confidence 4566666664 2344444444 44444433 3444455556656667899999888764433223221
Q ss_pred ---hHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCCCHhhHHHH-HHHHhcCCChhHHHHHHHHHHhcCC--CCCch
Q 046547 173 ---TCNYLVSSLCAIDQLVEAAKVLKGMSSA----ECVPDLESYSIV-IGAMSTARKTNDAVEMMKEMVLNMG--LMPRQ 242 (343)
Q Consensus 173 ---~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~m~~~~~--~~p~~ 242 (343)
....++..+.+.+... |....++..+. +..+-...|..+ +..+...++...|.+.++.+..-.. ..|-.
T Consensus 99 k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~ 177 (608)
T PF10345_consen 99 KFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAV 177 (608)
T ss_pred HHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHH
Confidence 2335566666666655 88877776542 222334444444 3333334799999999988876432 34445
Q ss_pred hHHHHHHHHHH--hCccHHHHHHHHHHHHHcCC---------CCchhhHHHHHHH--HHhcccHhHHHHHHHHH
Q 046547 243 GMVIKVAAALR--ANREMWKAVEMIEFLERKGC---------PIGFQGYEVVVEG--CLECREYILAGKTVMGM 303 (343)
Q Consensus 243 ~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~---------~p~~~~~~~li~~--~~~~g~~~~a~~~~~~m 303 (343)
.++-.++.+.. +.+..+++.+.++.+..... .|-..+|..+++. +...|+++.+...++++
T Consensus 178 ~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 178 FVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 55555666554 34556677777776643211 2345567777666 44577766776665554
No 313
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=80.72 E-value=16 Score=25.79 Aligned_cols=27 Identities=11% Similarity=-0.033 Sum_probs=22.5
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
-|..|+..|...|..++|++++.++.+
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 577888888888888888888888876
No 314
>PHA02875 ankyrin repeat protein; Provisional
Probab=80.61 E-value=35 Score=30.68 Aligned_cols=176 Identities=14% Similarity=0.112 Sum_probs=83.5
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC----HhhHHHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQ---IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD----CGTCNYLVSSL 181 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~----~~~~~~ll~~~ 181 (343)
.++..|+.+ +.+.+.+.|..|+.. ..+.+..+ +..| +.+.+.. +.+.|...+ ..-.+ .+...
T Consensus 41 ~A~~~~~~~----~v~~Ll~~ga~~~~~~~~~~t~L~~A-~~~g-~~~~v~~----Ll~~~~~~~~~~~~~g~t-pL~~A 109 (413)
T PHA02875 41 LAMKFRDSE----AIKLLMKHGAIPDVKYPDIESELHDA-VEEG-DVKAVEE----LLDLGKFADDVFYKDGMT-PLHLA 109 (413)
T ss_pred HHHHcCCHH----HHHHHHhCCCCccccCCCcccHHHHH-HHCC-CHHHHHH----HHHcCCcccccccCCCCC-HHHHH
Confidence 344556654 344445566655432 23344433 4544 4554333 334443221 11223 33444
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhh--HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHhCc
Q 046547 182 CAIDQLVEAAKVLKGMSSAECVPDLES--YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANR 256 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~ 256 (343)
+..|+.+ +++.+.+.|..|+... -.+.+...+..|+.+-+.-++ + .|..++ ..-.+.|..| +..|
T Consensus 110 ~~~~~~~----iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~~~~v~~Ll----~-~g~~~~~~d~~g~TpL~~A-~~~g 179 (413)
T PHA02875 110 TILKKLD----IMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLI----D-HKACLDIEDCCGCTPLIIA-MAKG 179 (413)
T ss_pred HHhCCHH----HHHHHHhCCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHH----h-cCCCCCCCCCCCCCHHHHH-HHcC
Confidence 4566654 4445555666554322 123344455667755443333 3 244433 3333444444 4556
Q ss_pred cHHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHH
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQG---YEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 313 (343)
+.+ +.+.+.+.|..|+... ..+++...+..|+.+ +.+.+.+.|..|+..
T Consensus 180 ~~e----iv~~Ll~~ga~~n~~~~~~~~t~l~~A~~~~~~~----iv~~Ll~~gad~n~~ 231 (413)
T PHA02875 180 DIA----ICKMLLDSGANIDYFGKNGCVAALCYAIENNKID----IVRLFIKRGADCNIM 231 (413)
T ss_pred CHH----HHHHHHhCCCCCCcCCCCCCchHHHHHHHcCCHH----HHHHHHHCCcCcchH
Confidence 554 4445566676665432 124454445566654 444455678777643
No 315
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=80.36 E-value=6.5 Score=25.84 Aligned_cols=51 Identities=10% Similarity=-0.054 Sum_probs=39.9
Q ss_pred HHHHHhcccHhHHHHHHHHHhHCCCCCC--HHHHHHHHHHHhccCChhHHHHHH
Q 046547 284 VEGCLECREYILAGKTVMGMTERGFIPY--IKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
+..| ..++.++|+..|....++-..|. ..++..|+.+|+..|++.+++++-
T Consensus 14 lkLY-~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 14 LKLY-HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHh-ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334 77888999999999887744432 457889999999999999987753
No 316
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=80.02 E-value=10 Score=30.05 Aligned_cols=53 Identities=11% Similarity=-0.034 Sum_probs=32.8
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
...+.+......+..++-....|+..+|..++.++...|+.++|.+...++..
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~ 172 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARARR 172 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44444444444444333334567777777777777777777777777777665
No 317
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=79.81 E-value=15 Score=26.74 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=38.5
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 249 (343)
+..+.+..+....+.|+..+...-+.+|-+.+++.-|.++|+-++. .+.+-...|-.++
T Consensus 67 EvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~--K~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 67 EVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKD--KCGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHH--hcccHHHHHHHHH
Confidence 4455555666666777777777777777777777777777777764 3334444455444
No 318
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=79.63 E-value=3.8 Score=21.10 Aligned_cols=23 Identities=17% Similarity=0.224 Sum_probs=12.8
Q ss_pred HHHHHhccCChhHHHHHHHHHHh
Q 046547 318 VVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 318 li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+..++.+.|++++|.+.|+++.+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~ 28 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIK 28 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHH
Confidence 34455555666666666665544
No 319
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=79.43 E-value=23 Score=28.68 Aligned_cols=77 Identities=13% Similarity=0.105 Sum_probs=57.6
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc--CCCCchhhHHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK--GCPIGFQGYEVVVE 285 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~ 285 (343)
|.+..++.+.+.+..++|+...++-.+ .-+.|..+-..+++.+|-.|+|++|..-++-.-.. ...+-..+|..+|.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVk--akPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVK--AKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHh--cCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 456677888899999999999888763 44557777889999999999999998877765542 23344556766665
Q ss_pred H
Q 046547 286 G 286 (343)
Q Consensus 286 ~ 286 (343)
+
T Consensus 81 ~ 81 (273)
T COG4455 81 C 81 (273)
T ss_pred H
Confidence 4
No 320
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=78.66 E-value=6.1 Score=20.47 Aligned_cols=15 Identities=13% Similarity=-0.059 Sum_probs=5.2
Q ss_pred HHhcccHhHHHHHHH
Q 046547 287 CLECREYILAGKTVM 301 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~ 301 (343)
|...|++++|.+.|+
T Consensus 11 ~~~~~~~~~A~~~~~ 25 (34)
T PF07719_consen 11 YYQLGNYEEAIEYFE 25 (34)
T ss_dssp HHHTT-HHHHHHHHH
T ss_pred HHHhCCHHHHHHHHH
Confidence 333333333333333
No 321
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=78.62 E-value=61 Score=30.67 Aligned_cols=184 Identities=15% Similarity=0.004 Sum_probs=108.7
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHH-HHH-HHhccCchhHHHHHHHHHHh-------cCCccCHhhHHHHHHHHHccC-
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLL-SSA-WLERRCQSQSVADILLEMKS-------IGYHPDCGTCNYLVSSLCAID- 185 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~-~~~~~~~~~~a~~~~~~m~~-------~g~~~~~~~~~~ll~~~~~~~- 185 (343)
...|.+.++...+.|-.-.......+ ..+ +.. .++.+.|..+|+...+ +| ......-+-.+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~-~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~ 303 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGV-TQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLG 303 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccc-cccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCC
Confidence 45788888888877732222221111 112 222 3568899999998877 55 3335555666666632
Q ss_pred ----cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc-CCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH--hCccH
Q 046547 186 ----QLVEAAKVLKGMSSAECVPDLESYSIVIGAMST-ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR--ANREM 258 (343)
Q Consensus 186 ----~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~--~~~~~ 258 (343)
+.+.|..++...-+.|. |+...+-..+.-... ..+...|.++|...-.. |..+ ..-+-+++.... -..+.
T Consensus 304 ~~~~d~~~A~~~~~~aA~~g~-~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~-G~~~-A~~~la~~y~~G~gv~r~~ 380 (552)
T KOG1550|consen 304 VEKIDYEKALKLYTKAAELGN-PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA-GHIL-AIYRLALCYELGLGVERNL 380 (552)
T ss_pred CccccHHHHHHHHHHHHhcCC-chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc-CChH-HHHHHHHHHHhCCCcCCCH
Confidence 67889999998888775 555544333333333 34678999999998863 6543 333333333222 34588
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
+.|..++++..+.|........ ..+..+.. ++++.+.-.+..+.+.|.
T Consensus 381 ~~A~~~~k~aA~~g~~~A~~~~-~~~~~~g~-~~~~~~~~~~~~~a~~g~ 428 (552)
T KOG1550|consen 381 ELAFAYYKKAAEKGNPSAAYLL-GAFYEYGV-GRYDTALALYLYLAELGY 428 (552)
T ss_pred HHHHHHHHHHHHccChhhHHHH-HHHHHHcc-ccccHHHHHHHHHHHhhh
Confidence 8999999999888832222222 22333444 666666666666655553
No 322
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=78.28 E-value=42 Score=28.66 Aligned_cols=76 Identities=14% Similarity=0.123 Sum_probs=37.2
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchh----HHHHHHHHHHhCccHHHHHHHHHH-HHHcCCCCchhhHHHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG----MVIKVAAALRANREMWKAVEMIEF-LERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~ 286 (343)
|..-......+++.....++-..+ .--|+.. .|+.++++ ..|.+-.++..+ ..+ ...+|.-|+.+
T Consensus 261 L~~q~s~e~p~~evi~~VKee~k~-~nlPe~eVi~ivWs~iMsa----veWnKkeelva~qalr-----hlK~yaPLL~a 330 (412)
T KOG2297|consen 261 LQEQVSEEDPVKEVILYVKEEMKR-NNLPETEVIGIVWSGIMSA----VEWNKKEELVAEQALR-----HLKQYAPLLAA 330 (412)
T ss_pred HHHHhccCCCHHHHHHHHHHHHHh-cCCCCceEEeeeHhhhhHH----HhhchHHHHHHHHHHH-----HHHhhhHHHHH
Confidence 333344444556655555443333 3345543 35555544 333332222221 111 22467778888
Q ss_pred HHhcccHhHHH
Q 046547 287 CLECREYILAG 297 (343)
Q Consensus 287 ~~~~g~~~~a~ 297 (343)
++..|+.+.++
T Consensus 331 f~s~g~sEL~L 341 (412)
T KOG2297|consen 331 FCSQGQSELEL 341 (412)
T ss_pred HhcCChHHHHH
Confidence 88888766543
No 323
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=78.09 E-value=5 Score=23.05 Aligned_cols=23 Identities=13% Similarity=0.088 Sum_probs=11.6
Q ss_pred HHHHHhcccHhHHHHHHHHHhHC
Q 046547 284 VEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
-.+|...|+.+.|.+++++....
T Consensus 6 A~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 6 ARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred HHHHHHcCChHHHHHHHHHHHHc
Confidence 34455555555555555555433
No 324
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=77.95 E-value=42 Score=28.45 Aligned_cols=70 Identities=11% Similarity=0.074 Sum_probs=29.4
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCCchhHHHHH-HHHHHhCccHHHHHHHHHHHHHcCCCC
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMPRQGMVIKV-AAALRANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~g~~p 275 (343)
...+..+..-|+..++.+.+.++.++..++ .|.+.|+...-+= --.|....-.++-++..+.|.++|...
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 344445555555555555555544433321 2344443222111 111222233444555555555555443
No 325
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=77.92 E-value=58 Score=30.07 Aligned_cols=179 Identities=12% Similarity=0.061 Sum_probs=110.2
Q ss_pred CccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH
Q 046547 132 VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI 211 (343)
Q Consensus 132 ~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ 211 (343)
..|.....+++..+.+.. ...-+..+..+|...| -+-..|-.++.+|..+ ..+.-..+|+++.+..+. |++.-..
T Consensus 63 ~l~d~~l~~~~~~f~~n~-k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~Re 137 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNH-KNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRE 137 (711)
T ss_pred cccchHHHHHHHHhccch-HHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHH
Confidence 345555666776665554 3566677777777754 3556777788888777 557778888887776542 3333344
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCch------hHHHHHHHHHHhCccHHHHHHHHHHHHHc-CCCCchhhHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ------GMVIKVAAALRANREMWKAVEMIEFLERK-GCPIGFQGYEVVV 284 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~li 284 (343)
|..-|-+ ++.+.+..+|..... .+.|.. ..|.-++.. -..+.+....+..+.... |...-...+.-+-
T Consensus 138 La~~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~ 212 (711)
T COG1747 138 LADKYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVY 212 (711)
T ss_pred HHHHHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHH
Confidence 4444444 777888888888774 444422 233333321 145667777777666543 4444555666666
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 321 (343)
.-|....++.+|++++....+.+- -|...-..++.-
T Consensus 213 ~~Ys~~eN~~eai~Ilk~il~~d~-k~~~ar~~~i~~ 248 (711)
T COG1747 213 KKYSENENWTEAIRILKHILEHDE-KDVWARKEIIEN 248 (711)
T ss_pred HHhccccCHHHHHHHHHHHhhhcc-hhhhHHHHHHHH
Confidence 778888888888888887766542 244444444443
No 326
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=77.25 E-value=20 Score=29.43 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=65.2
Q ss_pred HHHhCccCcchHHHHHHHchhcCCCCChHHH--hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCCh
Q 046547 39 RAAVDAKDYQQIPELLGSFEEACQNPNPFSF--LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPL 116 (343)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 116 (343)
..|-..++++.|.+-+ ++...+.|++.+| +.++|... .+.++.+.+.-.......||..--..++..+......+
T Consensus 18 nk~f~~k~y~~ai~~y--~raI~~nP~~~~Y~tnralchlk-~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCY--SRAICINPTVASYYTNRALCHLK-LKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccccchhhhchHHHHH--HHHHhcCCCcchhhhhHHHHHHH-hhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccc
Confidence 3444556788888844 4555668999888 67777554 44444444433322234557666666666566666779
Q ss_pred HHHHHHHHHHH----hcCCCccHHHHHHHHHH
Q 046547 117 PLALAILQRTL----RSGCVPVPQIRLLLSSA 144 (343)
Q Consensus 117 ~~a~~~~~~m~----~~~~~p~~~~~~~li~~ 144 (343)
+.|+..+.+.. +..+.|-....+.|..+
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~a 126 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDA 126 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHH
Confidence 99999988873 44455656666777655
No 327
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=77.21 E-value=6.4 Score=33.30 Aligned_cols=37 Identities=14% Similarity=0.139 Sum_probs=22.1
Q ss_pred CCchhH-HHHHHHHHHhCccHHHHHHHHHHHHHcCCCC
Q 046547 239 MPRQGM-VIKVAAALRANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 239 ~p~~~~-~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 275 (343)
.||..+ |+.-|....+.|++++|+.++++.++.|+.-
T Consensus 253 ~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~ 290 (303)
T PRK10564 253 LNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTS 290 (303)
T ss_pred CchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCch
Confidence 344444 4566666666666666666666666666543
No 328
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=76.90 E-value=33 Score=26.77 Aligned_cols=20 Identities=5% Similarity=0.303 Sum_probs=9.0
Q ss_pred HHhcCCChhHHHHHHHHHHh
Q 046547 215 AMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~ 234 (343)
-++...+..++.+++++...
T Consensus 37 ELAqfk~g~es~~miedAis 56 (186)
T PF06552_consen 37 ELAQFKQGPESKKMIEDAIS 56 (186)
T ss_dssp HHHHHS-HHHHHHHHHHHHH
T ss_pred HHHhccCcchHHHHHHHHHH
Confidence 33334444455555555443
No 329
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.76 E-value=68 Score=30.27 Aligned_cols=97 Identities=11% Similarity=0.033 Sum_probs=48.5
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
.|+++.|.++..+.. +..-|..|-.+..+.+ ++..|.+.|....+ |..|+-.+...|+-+....
T Consensus 650 lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~-~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~ 713 (794)
T KOG0276|consen 650 LGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG-ELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAV 713 (794)
T ss_pred cCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc-cchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHH
Confidence 356666665554432 2334555555544544 45556555544332 3445555555555554444
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 231 (343)
+-...++.|.. |....+|...|+++++.+++.+
T Consensus 714 la~~~~~~g~~------N~AF~~~~l~g~~~~C~~lLi~ 746 (794)
T KOG0276|consen 714 LASLAKKQGKN------NLAFLAYFLSGDYEECLELLIS 746 (794)
T ss_pred HHHHHHhhccc------chHHHHHHHcCCHHHHHHHHHh
Confidence 44444444421 2333345555666666665544
No 330
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=76.72 E-value=31 Score=26.33 Aligned_cols=51 Identities=18% Similarity=0.011 Sum_probs=30.1
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH-HHhccCchhHHHHHHHHHHhc
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSA-WLERRCQSQSVADILLEMKSI 165 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~~~~~~~a~~~~~~m~~~ 165 (343)
..++.+++..+++.++. +.|.......+-.. +... +++.+|.++|+++...
T Consensus 22 ~~~~~~D~e~lL~ALrv--LRP~~~e~~~~~~~l~i~r-~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 22 RLGDPDDAEALLDALRV--LRPEFPELDLFDGWLHIVR-GDWDDALRLLRELEER 73 (160)
T ss_pred ccCChHHHHHHHHHHHH--hCCCchHHHHHHHHHHHHh-CCHHHHHHHHHHHhcc
Confidence 44677788888877765 34544433332222 2333 4678888888887654
No 331
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=76.10 E-value=38 Score=28.52 Aligned_cols=88 Identities=14% Similarity=0.093 Sum_probs=58.6
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH-
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLN-MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL- 288 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~- 288 (343)
.=|.+++..|+|.+++.+.-+.-+. ..++|. +...-|-.|.|.+++..+.++-..-...--.-+...|..+.+.|.
T Consensus 88 vGIQALAEmnrWreVLsWvlqyYq~pEklPpk--IleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl 165 (309)
T PF07163_consen 88 VGIQALAEMNRWREVLSWVLQYYQVPEKLPPK--ILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLL 165 (309)
T ss_pred hhHHHHHHHhhHHHHHHHHHHHhcCcccCCHH--HHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHH
Confidence 4478889999999988776554431 133333 344555568899999988888887765322222334777666654
Q ss_pred ----hcccHhHHHHHH
Q 046547 289 ----ECREYILAGKTV 300 (343)
Q Consensus 289 ----~~g~~~~a~~~~ 300 (343)
=.|.+++|+++.
T Consensus 166 ~VLlPLG~~~eAeelv 181 (309)
T PF07163_consen 166 HVLLPLGHFSEAEELV 181 (309)
T ss_pred HHHhccccHHHHHHHH
Confidence 478999998887
No 332
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.54 E-value=41 Score=31.59 Aligned_cols=81 Identities=7% Similarity=-0.025 Sum_probs=42.0
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
+..-|..|-++....|++..|.+.|..... |..|+-.+...|+.+....+-....+.|.. |.-.
T Consensus 665 s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d----------~~~LlLl~t~~g~~~~l~~la~~~~~~g~~------N~AF 728 (794)
T KOG0276|consen 665 SEVKWRQLGDAALSAGELPLASECFLRARD----------LGSLLLLYTSSGNAEGLAVLASLAKKQGKN------NLAF 728 (794)
T ss_pred chHHHHHHHHHHhhcccchhHHHHHHhhcc----------hhhhhhhhhhcCChhHHHHHHHHHHhhccc------chHH
Confidence 444556666666666666666555555431 445555555555555444444444444321 2223
Q ss_pred HHHHhcccHhHHHHHHH
Q 046547 285 EGCLECREYILAGKTVM 301 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~ 301 (343)
-+|...|+++++.+++.
T Consensus 729 ~~~~l~g~~~~C~~lLi 745 (794)
T KOG0276|consen 729 LAYFLSGDYEECLELLI 745 (794)
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 34555666666666554
No 333
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=75.38 E-value=53 Score=28.35 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=49.4
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCCchhHHHHHHHH-HHhCccHHHHHHHHHHHHHcCCCCchh----h
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAAA-LRANREMWKAVEMIEFLERKGCPIGFQ----G 279 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~~-~~~~~~~~~a~~~~~~m~~~g~~p~~~----~ 279 (343)
..-....-||+.|+.+.|++.++.-.++ .|.+.|+..+.+=+.. |....-+.+-.+..+.+.+.|...+.. +
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKv 185 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKV 185 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHH
Confidence 3444455566666666666665554332 3445555443332222 222223334444444455555544332 3
Q ss_pred HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
|..+- |....++.+|-.+|-+....--.-...+|.+++.
T Consensus 186 Y~Gly--~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~ 224 (393)
T KOG0687|consen 186 YQGLY--CMSVRNFKEAADLFLDSVSTFTSYELMSYETFVR 224 (393)
T ss_pred HHHHH--HHHHHhHHHHHHHHHHHcccccceecccHHHHHH
Confidence 33221 3344556666665554433211222334444444
No 334
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=74.94 E-value=49 Score=27.75 Aligned_cols=159 Identities=11% Similarity=0.055 Sum_probs=75.2
Q ss_pred CcHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHHh--cCCC--CCchhHHHHHHHHHHhCcc
Q 046547 185 DQLVEAAKVLKGMSSAECVPD---LESYSIVIGAMSTARKTNDAVEMMKEMVL--NMGL--MPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~--~p~~~~~~~li~~~~~~~~ 257 (343)
.++++|+.-|.+..+...... -...-.++....+.|++++....+.++.. ++.+ .-+....|+++..-....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 355666666665544321111 22333445556666666666665555542 0011 1133445555555555555
Q ss_pred HHHHHHHHHHHHH----c-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC-----------CCCHHHHHHHHHH
Q 046547 258 MWKAVEMIEFLER----K-GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF-----------IPYIKVRQKVVEG 321 (343)
Q Consensus 258 ~~~a~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~-----------~p~~~~~~~li~~ 321 (343)
.+...++++.-.+ . +-+.-..|-.-|-..|...|++.+..++++++...-- ..-...|..=|+.
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQm 200 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQM 200 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhh
Confidence 5554444443221 0 1111112223444555566666666666666543210 0113455555666
Q ss_pred HhccCChhHHHHHHHHHHhhcC
Q 046547 322 LAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 322 ~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
|...++-.....++++-...||
T Consensus 201 YT~qKnNKkLK~lYeqalhiKS 222 (440)
T KOG1464|consen 201 YTEQKNNKKLKALYEQALHIKS 222 (440)
T ss_pred hhhhcccHHHHHHHHHHHHhhc
Confidence 6666666666666665555443
No 335
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=74.89 E-value=13 Score=21.74 Aligned_cols=32 Identities=9% Similarity=0.032 Sum_probs=18.5
Q ss_pred hcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 14 ~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 14 RRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 45555566666666666666655555555443
No 336
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=74.65 E-value=6.1 Score=19.37 Aligned_cols=26 Identities=12% Similarity=0.107 Sum_probs=12.8
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 315 RQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
|..+...+...|++++|...+++..+
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 33444445555555555555554443
No 337
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=73.99 E-value=43 Score=26.59 Aligned_cols=142 Identities=9% Similarity=0.019 Sum_probs=90.2
Q ss_pred HHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHH-----HHHHHhcCCChhHHHHHH
Q 046547 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSI-----VIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 155 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~-----ll~~~~~~~~~~~a~~~~ 229 (343)
..++|+.-.-....--+..|..++..... +.+ +.....+++.... ...+|.. +...++..|++++|...+
T Consensus 38 GW~ywq~~q~~q~~~AS~~Y~~~i~~~~a-k~~-~~~~~~ekf~~~n---~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL 112 (207)
T COG2976 38 GWRYWQSHQVEQAQEASAQYQNAIKAVQA-KKP-KSIAAAEKFVQAN---GKTIYAVLAALELAKAEVEANNLDKAEAQL 112 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCc-hhHHHHHHHHhhc---cccHHHHHHHHHHHHHHHhhccHHHHHHHH
Confidence 45666554443344456678888877753 333 5566666776643 2333432 345678889999999988
Q ss_pred HHHHhcCCCCCchhHHHHH-----HHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 230 KEMVLNMGLMPRQGMVIKV-----AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~l-----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
+..... |....+..+ .+.....|.+|+|+.+++...+.+..+ .....--+.+...|+-++|..-|++..
T Consensus 113 ~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kAl 186 (207)
T COG2976 113 KQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKAL 186 (207)
T ss_pred HHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHHH
Confidence 887643 333344443 345667788999999888776654432 222223455888999999999998888
Q ss_pred HCC
Q 046547 305 ERG 307 (343)
Q Consensus 305 ~~g 307 (343)
..+
T Consensus 187 ~~~ 189 (207)
T COG2976 187 ESD 189 (207)
T ss_pred Hcc
Confidence 776
No 338
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=73.85 E-value=55 Score=27.81 Aligned_cols=144 Identities=14% Similarity=0.088 Sum_probs=72.7
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
.....|++.+|...|.......-. +...--.+..+|...|+.+.|..++..+..+ --.........-|..+.+.....
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcCC
Confidence 344567777777777766554321 2334445666777777777777777776532 11111112122233333333333
Q ss_pred HHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCChh
Q 046547 260 KAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTER--GFIPYIKVRQKVVEGLAGVGEWK 329 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~ 329 (343)
+..++-.+... .| |...--.+-..+...|+.++|.+.+-.+..+ |.. |...-..|++.+.--|..|
T Consensus 221 ~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~D 289 (304)
T COG3118 221 EIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPAD 289 (304)
T ss_pred CHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCC
Confidence 33333333332 23 3333334555666777777777655555443 322 3444555666665555333
No 339
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=73.77 E-value=55 Score=27.77 Aligned_cols=123 Identities=10% Similarity=0.013 Sum_probs=73.0
Q ss_pred cccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHH----hcCCCccHHHHHHHHHHHHhccCc
Q 046547 76 NHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL----RSGCVPVPQIRLLLSSAWLERRCQ 151 (343)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~~~~ 151 (343)
..+++.+++.++...+..+...-...+..+-. +|++-++.+.+.+...+.. ..|.+.|.....+-+..+.....-
T Consensus 92 eeki~Elde~i~~~eedngE~e~~ea~~n~ae-yY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v 170 (412)
T COG5187 92 EEKIEELDERIREKEEDNGETEGSEADRNIAE-YYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV 170 (412)
T ss_pred HHHHHHHHHHHHHHhhcccchHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence 33467777777776654443323455666665 7888888888887776643 457777766555555433333344
Q ss_pred hhHHHHHHHHHHhcCCccCHh-hHHHHHHH-HHccCcHHHHHHHHHHhhh
Q 046547 152 SQSVADILLEMKSIGYHPDCG-TCNYLVSS-LCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~-~~~~ll~~-~~~~~~~~~a~~~~~~m~~ 199 (343)
+++-++..+.|.++|..=+.. -|...=.. +....++.+|-.++.+...
T Consensus 171 V~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~ 220 (412)
T COG5187 171 VEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILP 220 (412)
T ss_pred HHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhc
Confidence 677788888888887533221 12221111 2234567788777776654
No 340
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=73.53 E-value=61 Score=28.17 Aligned_cols=67 Identities=13% Similarity=0.069 Sum_probs=51.8
Q ss_pred CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC---chhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 204 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
....++..+...+-+.|+++.|...+..+.. .+..+ ++...-.-++.+-..|+..+|...++...+.
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~-~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQ-LNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhc-cCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4456788899999999999999999999885 23222 3444555667778889999999999988873
No 341
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=73.46 E-value=45 Score=26.66 Aligned_cols=87 Identities=17% Similarity=0.050 Sum_probs=64.2
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCch-----hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHH-HH---H
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQ-----GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE-VV---V 284 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l---i 284 (343)
+-+.+.|++++|..-|....+ -+++.. ..|..=..++.+.+.++.|+.--...++.+ | ||+ +| .
T Consensus 103 N~~F~ngdyeeA~skY~~Ale--~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--p---ty~kAl~RRA 175 (271)
T KOG4234|consen 103 NELFKNGDYEEANSKYQEALE--SCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--P---TYEKALERRA 175 (271)
T ss_pred HHhhhcccHHHHHHHHHHHHH--hCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--c---hhHHHHHHHH
Confidence 457789999999999999985 565543 345555567888889998888777777643 4 333 22 3
Q ss_pred HHHHhcccHhHHHHHHHHHhHCC
Q 046547 285 EGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.+|.+...+++|+.=|+++.+..
T Consensus 176 eayek~ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 176 EAYEKMEKYEEALEDYKKILESD 198 (271)
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC
Confidence 45888889999999999888764
No 342
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=73.42 E-value=16 Score=26.53 Aligned_cols=63 Identities=11% Similarity=0.130 Sum_probs=46.6
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
+-.+..+-++.+....+.|+......-+++|.+.+++..|.++|+-.+.+ +.+....|-.+++
T Consensus 64 D~wEvrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K-~g~~k~~Y~y~v~ 126 (149)
T KOG4077|consen 64 DGWEVRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK-CGAQKQVYPYYVK 126 (149)
T ss_pred hHHHHHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh-cccHHHHHHHHHH
Confidence 44566777777777788899988888899999999999999999887765 2233334655554
No 343
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=73.00 E-value=38 Score=25.55 Aligned_cols=63 Identities=19% Similarity=0.013 Sum_probs=42.2
Q ss_pred CCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHc
Q 046547 113 LHPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 183 (343)
.++++++..+++.|+- +.|+. .+|-..+. ... +++++|.++|++..+.+.. ..|..-+.++|-
T Consensus 23 ~~d~~D~e~lLdALrv--LrP~~~e~d~~dg~l~--i~r-g~w~eA~rvlr~l~~~~~~---~p~~kAL~A~CL 88 (153)
T TIGR02561 23 SADPYDAQAMLDALRV--LRPNLKELDMFDGWLL--IAR-GNYDEAARILRELLSSAGA---PPYGKALLALCL 88 (153)
T ss_pred cCCHHHHHHHHHHHHH--hCCCccccchhHHHHH--HHc-CCHHHHHHHHHhhhccCCC---chHHHHHHHHHH
Confidence 5789999999999976 44554 44444443 344 5799999999999876532 234444444444
No 344
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.62 E-value=54 Score=27.15 Aligned_cols=144 Identities=13% Similarity=-0.001 Sum_probs=77.5
Q ss_pred CccCH----hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch
Q 046547 167 YHPDC----GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ 242 (343)
Q Consensus 167 ~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~ 242 (343)
.+||- ..|..--.+|....++++|...+.+..+ +.+-+..-|.+ ....+.|..+.+++.. +.--+
T Consensus 23 wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfhA-------AKayEqaamLake~~k---lsEvv 91 (308)
T KOG1585|consen 23 WKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFHA-------AKAYEQAAMLAKELSK---LSEVV 91 (308)
T ss_pred cCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHHH-------HHHHHHHHHHHHHHHH---hHHHH
Confidence 45553 3455556677778888888877766553 12223222222 1235667777777653 12223
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC---C--CCCCHHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER---G--FIPYIKVRQK 317 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---g--~~p~~~~~~~ 317 (343)
..|+--...|..+|.++-|-.-+++.-+. ...-++++|++++++...- + .+--...+..
T Consensus 92 dl~eKAs~lY~E~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk 155 (308)
T KOG1585|consen 92 DLYEKASELYVECGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGK 155 (308)
T ss_pred HHHHHHHHHHHHhCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 45666777777777777766666654321 1233344455554443211 1 0111234555
Q ss_pred HHHHHhccCChhHHHHHHHH
Q 046547 318 VVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 318 li~~~~~~g~~~~a~~~~~~ 337 (343)
+-..|++..++++|-..+.+
T Consensus 156 ~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 156 CSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred hhhHhhhhHHhhHHHHHHHH
Confidence 66677777777777665544
No 345
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=72.21 E-value=4.5 Score=29.60 Aligned_cols=31 Identities=19% Similarity=0.153 Sum_probs=21.4
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSA 144 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~ 144 (343)
+.|.-.+|..+|.+|+++|-+||. |+.|+..
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~ 137 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPDD--WDALLKE 137 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCcc--HHHHHHH
Confidence 345567788888888888877774 5566544
No 346
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=72.02 E-value=8.5 Score=22.08 Aligned_cols=26 Identities=23% Similarity=0.228 Sum_probs=20.5
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
-|..+|...|+.+.|.+++++....|
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 35678888888888888888887644
No 347
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=71.99 E-value=1.1e+02 Score=30.38 Aligned_cols=222 Identities=10% Similarity=-0.061 Sum_probs=111.6
Q ss_pred cCCChHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhccCchhHHHHHHHHHHh----cCCccCHhhHHHHHHH
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVP-------QIRLLLSSAWLERRCQSQSVADILLEMKS----IGYHPDCGTCNYLVSS 180 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~~~~~~~~~ll~~ 180 (343)
...++.+|..++.+....=-.|+. ..|+.+-.-..-..++++++.++-+.... .-..+....+..+..+
T Consensus 427 s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a 506 (894)
T COG2909 427 SQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEA 506 (894)
T ss_pred HccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHH
Confidence 456788998888887543222211 23444443333333467777776655543 2334455666677777
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHH---HHHH--HHhcCCChh--HHHHHHHHHHhc-----CCCCCchhHHHHH
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYS---IVIG--AMSTARKTN--DAVEMMKEMVLN-----MGLMPRQGMVIKV 248 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~---~ll~--~~~~~~~~~--~a~~~~~~m~~~-----~~~~p~~~~~~~l 248 (343)
..-.|++++|..+..+..+..-.-+...|. .+.. .+...|+.. +....|...... .-..+-..++..+
T Consensus 507 ~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~l 586 (894)
T COG2909 507 AHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQL 586 (894)
T ss_pred HHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHH
Confidence 777899999988877665542223333332 2222 233445322 222223332221 0111233455566
Q ss_pred HHHHHhCccHHHHHHHHHH----HHHcCCCCchhh--HHHHHHHHHhcccHhHHHHHHHHHhHCCC----CCCHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEF----LERKGCPIGFQG--YEVVVEGCLECREYILAGKTVMGMTERGF----IPYIKVRQKV 318 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~----m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~~m~~~g~----~p~~~~~~~l 318 (343)
..++.+ .+.+..=... -......|-... +..|...+...|+.++|...+.++..... .++...-...
T Consensus 587 l~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~ 663 (894)
T COG2909 587 LRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAYK 663 (894)
T ss_pred HHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHH
Confidence 666655 2222221111 111111221222 22566778889999999988888765432 2333333333
Q ss_pred HHH--HhccCChhHHHHHHH
Q 046547 319 VEG--LAGVGEWKLATVVRQ 336 (343)
Q Consensus 319 i~~--~~~~g~~~~a~~~~~ 336 (343)
+.. ....|+...|.....
T Consensus 664 v~~~lwl~qg~~~~a~~~l~ 683 (894)
T COG2909 664 VKLILWLAQGDKELAAEWLL 683 (894)
T ss_pred hhHHHhcccCCHHHHHHHHH
Confidence 332 234566666665443
No 348
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=71.52 E-value=56 Score=27.57 Aligned_cols=87 Identities=11% Similarity=0.054 Sum_probs=48.5
Q ss_pred HHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHh----
Q 046547 142 SSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMS---- 217 (343)
Q Consensus 142 i~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~---- 217 (343)
|.+++..+ ++.+++...-+--+.--+..+......|-.|.+.+++..+.++-..=...--.-+...|.++..-|.
T Consensus 90 IQALAEmn-rWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL 168 (309)
T PF07163_consen 90 IQALAEMN-RWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL 168 (309)
T ss_pred HHHHHHHh-hHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence 55666654 4666665443332222223345566666677788887777776665444322222334666655443
Q ss_pred -cCCChhHHHHHH
Q 046547 218 -TARKTNDAVEMM 229 (343)
Q Consensus 218 -~~~~~~~a~~~~ 229 (343)
=.|.+++|.++.
T Consensus 169 lPLG~~~eAeelv 181 (309)
T PF07163_consen 169 LPLGHFSEAEELV 181 (309)
T ss_pred hccccHHHHHHHH
Confidence 457788877766
No 349
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=71.24 E-value=1.1e+02 Score=29.96 Aligned_cols=185 Identities=13% Similarity=0.128 Sum_probs=109.2
Q ss_pred HHHHHHHHHHhcCCccC---HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----------hhHHHHHHHHhcCC
Q 046547 154 SVADILLEMKSIGYHPD---CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL----------ESYSIVIGAMSTAR 220 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------~~~~~ll~~~~~~~ 220 (343)
+-..++.+|..+--.|+ ..+...++-.|....+++...++.+.++.. ||. ..|...++-=-+-|
T Consensus 181 ~l~~~L~~mR~RlDnp~VL~~d~V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNRRNr~G 257 (1226)
T KOG4279|consen 181 QLNDYLDKMRTRLDNPDVLHPDTVSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNRRNRPG 257 (1226)
T ss_pred HHHHHHHHHHhhcCCccccCHHHHHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcccCCCc
Confidence 44567788876544454 456667777888888999999999998874 432 23544555555668
Q ss_pred ChhHHHHHHHHHHhc-CCCCCchh-----HHHHHH--HHHHhCccHHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHh
Q 046547 221 KTNDAVEMMKEMVLN-MGLMPRQG-----MVIKVA--AALRANREMWKAVEMIEFLERKGCPIGFQG---YEVVVEGCLE 289 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~-~~~~p~~~-----~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~ 289 (343)
+-++|+...-.+.++ ..+.||.. .|.-+. +.|...+..+.|.+.|++.-+ +.|+..+ +..|+.+-.+
T Consensus 258 DRakAL~~~l~lve~eg~vapDm~Cl~GRIYKDmF~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~aaG~ 335 (1226)
T KOG4279|consen 258 DRAKALNTVLPLVEKEGPVAPDMYCLCGRIYKDMFIASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRAAGE 335 (1226)
T ss_pred cHHHHHHHHHHHHHhcCCCCCceeeeechhhhhhhhccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHHhhh
Confidence 888898887777654 34667753 232222 235556677888888887665 5665543 3444433221
Q ss_pred ----cccHhHHHHHHHHHh-HCCCCCCHHHH---HHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 290 ----CREYILAGKTVMGMT-ERGFIPYIKVR---QKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 290 ----~g~~~~a~~~~~~m~-~~g~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
.-.....--.+..+. .+|..-...-| ...+.+-+-+.++.+|.+.-+.|-++|+
T Consensus 336 ~Fens~Elq~IgmkLn~LlgrKG~leklq~YWdV~~y~~asVLAnd~~kaiqAae~mfKLk~ 397 (1226)
T KOG4279|consen 336 HFENSLELQQIGMKLNSLLGRKGALEKLQEYWDVATYFEASVLANDYQKAIQAAEMMFKLKP 397 (1226)
T ss_pred hccchHHHHHHHHHHHHHhhccchHHHHHHHHhHHHhhhhhhhccCHHHHHHHHHHHhccCC
Confidence 111111111222222 22322222222 2335666778889999999888888874
No 350
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=71.19 E-value=20 Score=31.09 Aligned_cols=79 Identities=9% Similarity=-0.082 Sum_probs=43.0
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
+.|.+.|.+++|+.+|..-... .| |.++|..-..+|.+...+..|..=...... .-...+.+|.+.+.
T Consensus 105 N~yFKQgKy~EAIDCYs~~ia~--~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR~~ 173 (536)
T KOG4648|consen 105 NTYFKQGKYEEAIDCYSTAIAV--YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRRMQ 173 (536)
T ss_pred hhhhhccchhHHHHHhhhhhcc--CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHHHH
Confidence 3466777777777777655432 34 666666666667666666655544443332 12244555555554
Q ss_pred HHHHHHHHHHH
Q 046547 258 MWKAVEMIEFL 268 (343)
Q Consensus 258 ~~~a~~~~~~m 268 (343)
...++....+.
T Consensus 174 AR~~Lg~~~EA 184 (536)
T KOG4648|consen 174 ARESLGNNMEA 184 (536)
T ss_pred HHHHHhhHHHH
Confidence 44444444433
No 351
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=71.12 E-value=50 Score=26.20 Aligned_cols=50 Identities=18% Similarity=0.076 Sum_probs=22.9
Q ss_pred HHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
....|.+|+|+.+++...+.++.+ .....-.+.+...|+-++|+.-|++-
T Consensus 136 q~q~~k~D~AL~~L~t~~~~~w~~--~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 136 QLQQKKADAALKTLDTIKEESWAA--IVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHhhhHHHHHHHHhccccccHHH--HHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 444555555555555444433321 22333344455555555555555443
No 352
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=71.07 E-value=17 Score=21.28 Aligned_cols=30 Identities=10% Similarity=0.118 Sum_probs=19.0
Q ss_pred CchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
+..+++..++++|.+.|+..+...|..++.
T Consensus 16 GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 16 GLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred CChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 345566666677766666666666665554
No 353
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=70.87 E-value=26 Score=26.32 Aligned_cols=62 Identities=23% Similarity=0.139 Sum_probs=33.2
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC
Q 046547 264 MIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG 326 (343)
Q Consensus 264 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 326 (343)
+.+.+.+.|++++.. -..+++.+...++.-.|.++++++.+.+...+..|.-.-++.+...|
T Consensus 8 ~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 334445556655432 23455556666555667777777766655444444333345555554
No 354
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=70.71 E-value=69 Score=27.56 Aligned_cols=110 Identities=11% Similarity=-0.053 Sum_probs=68.4
Q ss_pred HHHHHHHHHHhhhCCC----CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHH
Q 046547 187 LVEAAKVLKGMSSAEC----VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~ 262 (343)
.+.|.+.|++....+. ..+...-..++...++.|+.+.-..+++.... .++......++.+++...+.+...
T Consensus 146 ~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~----~~~~~~k~~~l~aLa~~~d~~~~~ 221 (324)
T PF11838_consen 146 VAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKN----STSPEEKRRLLSALACSPDPELLK 221 (324)
T ss_dssp HHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHT----TSTHHHHHHHHHHHTT-S-HHHHH
T ss_pred HHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhc----cCCHHHHHHHHHhhhccCCHHHHH
Confidence 5677888888776422 34555566777888888886665555555553 246677888999999999999989
Q ss_pred HHHHHHHHcC-CCCchhhHHHHHHHHHhcccH--hHHHHHHHH
Q 046547 263 EMIEFLERKG-CPIGFQGYEVVVEGCLECREY--ILAGKTVMG 302 (343)
Q Consensus 263 ~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~--~~a~~~~~~ 302 (343)
++++.....+ +++.. . ..++.++...+.. +.+.+++.+
T Consensus 222 ~~l~~~l~~~~v~~~d-~-~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 222 RLLDLLLSNDKVRSQD-I-RYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHCTSTS-TTT-H-HHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHHcCCcccccHH-H-HHHHHHHhcCChhhHHHHHHHHHH
Confidence 9999888754 54433 3 3445555534433 667666654
No 355
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=70.11 E-value=58 Score=26.47 Aligned_cols=158 Identities=15% Similarity=0.039 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhh--hhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLS--NFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
++||-+--.+...|+++.|.+.|+...+-+-.-+-...++ .+.--||...+.+=+..+-+-.|..|=...|--++.
T Consensus 100 ~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E-- 177 (297)
T COG4785 100 EVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNE-- 177 (297)
T ss_pred HHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHH--
Confidence 4577777778889999999999998776432112222233 334566777776655555544454443344433332
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-------HhhHHHHHHHHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-------CGTCNYLVSSLC 182 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-------~~~~~~ll~~~~ 182 (343)
..-++.+|..-+.+=-+ ..|..-|...|-.|.- | +. ....+++..+... .-+ ..||-.+-.-+.
T Consensus 178 --~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yL-g-ki-S~e~l~~~~~a~a-~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 178 --QKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYL-G-KI-SEETLMERLKADA-TDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred --hhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHH-h-hc-cHHHHHHHHHhhc-cchHHHHHHHHHHHHHHHHHHh
Confidence 33467777655544221 2344445444433322 2 22 2334444443321 111 346666677777
Q ss_pred ccCcHHHHHHHHHHhhhC
Q 046547 183 AIDQLVEAAKVLKGMSSA 200 (343)
Q Consensus 183 ~~~~~~~a~~~~~~m~~~ 200 (343)
..|+.++|..+|+-....
T Consensus 249 ~~G~~~~A~~LfKLaian 266 (297)
T COG4785 249 SLGDLDEATALFKLAVAN 266 (297)
T ss_pred ccccHHHHHHHHHHHHHH
Confidence 788888888888766654
No 356
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=70.03 E-value=73 Score=27.58 Aligned_cols=120 Identities=15% Similarity=-0.012 Sum_probs=71.4
Q ss_pred cchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHH----hcCCCccHHHHHHHHHHHHhccCchh
Q 046547 78 RIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTL----RSGCVPVPQIRLLLSSAWLERRCQSQ 153 (343)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~----~~~~~p~~~~~~~li~~~~~~~~~~~ 153 (343)
+++.+++.++...+-.|...-...+-..- .++|+-||-+.|++.+.+.. ..|.+.|...+.+-+.-+.....-+.
T Consensus 83 ki~eld~~iedaeenlGE~ev~ea~~~ka-eYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV~ 161 (393)
T KOG0687|consen 83 KIKELDEKIEDAEENLGESEVREAMLRKA-EYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLVT 161 (393)
T ss_pred HHHHHHHHHHHHHHhcchHHHHHHHHHHH-HHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHHH
Confidence 45677777776654222111112233333 47889999999998887754 55788898888777765444333344
Q ss_pred HHHHHHHHHHhcCCcc----CHhhHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 046547 154 SVADILLEMKSIGYHP----DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 200 (343)
+-++..+.+.+.|..= -..+|.-+ .+....++.+|-.+|-+....
T Consensus 162 ~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 162 ESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHccc
Confidence 4555555555555422 23344433 233457888998888877653
No 357
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=69.42 E-value=13 Score=23.12 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=13.6
Q ss_pred HHHHHHHhcccHhHHHHHHHHHh
Q 046547 282 VVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.+|.+|...|++++|.++++++.
T Consensus 28 qvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 28 QVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHH
Confidence 45666666666666666666554
No 358
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=69.30 E-value=90 Score=28.35 Aligned_cols=75 Identities=8% Similarity=0.139 Sum_probs=46.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
...|+.-|...|+..+|.+..+++. ..+--....+.+++.+.-+.++-...+.++++.-+.|. .|-+.|-.+|.
T Consensus 512 I~~LLeEY~~~GdisEA~~CikeLg--mPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl----IT~nQMtkGf~ 585 (645)
T KOG0403|consen 512 IDMLLEEYELSGDISEACHCIKELG--MPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL----ITTNQMTKGFE 585 (645)
T ss_pred HHHHHHHHHhccchHHHHHHHHHhC--CCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc----eeHHHhhhhhh
Confidence 3456677777777777777777654 24444566677777777777776666666666555443 35555555554
Q ss_pred h
Q 046547 289 E 289 (343)
Q Consensus 289 ~ 289 (343)
+
T Consensus 586 R 586 (645)
T KOG0403|consen 586 R 586 (645)
T ss_pred h
Confidence 4
No 359
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=69.12 E-value=87 Score=28.73 Aligned_cols=117 Identities=9% Similarity=0.005 Sum_probs=69.9
Q ss_pred ccCcHHHHH-HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHH
Q 046547 183 AIDQLVEAA-KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 183 ~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a 261 (343)
..|++-.|. +++..+....-.|+..-.-+. .+...|+++.+...+..... -+.....+-.++++...+.|+++.|
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~--~~~s~~~~~~~~~r~~~~l~r~~~a 376 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEK--IIGTTDSTLRCRLRSLHGLARWREA 376 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhh--hhcCCchHHHHHHHhhhchhhHHHH
Confidence 445555543 344445544445554443333 24456778888877777652 4445566777788888888888888
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 262 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
..+-.-|....+. +......-.-.--..|-++++.-.|+++.
T Consensus 377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~ 418 (831)
T PRK15180 377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVL 418 (831)
T ss_pred HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHh
Confidence 8888777766554 22222222223445566777777777664
No 360
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=68.57 E-value=74 Score=27.64 Aligned_cols=71 Identities=13% Similarity=0.095 Sum_probs=40.3
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhC---CCCCCHhhH--HHHHHHHhcCCChhHHHHHHHHHHh----cCCCCCchhH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLESY--SIVIGAMSTARKTNDAVEMMKEMVL----NMGLMPRQGM 244 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~p~~~~ 244 (343)
...++...-+.++.++|++.++++.+. --.|+.+.| +.+...+...|+..++.+++++.+. ..+++|++.+
T Consensus 78 vei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~ 157 (380)
T KOG2908|consen 78 VEILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHS 157 (380)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhh
Confidence 344445555566777777777776542 234555544 3344555566777777777776664 0255554443
No 361
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=67.61 E-value=22 Score=31.62 Aligned_cols=266 Identities=10% Similarity=-0.064 Sum_probs=151.1
Q ss_pred HHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccc----hHHHHHHHHhcC------CCCCCC-ChhhHHHHH
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRI----KVIDEMLESFIP------LRPRSR-PKIAYDYLL 106 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~----~~~~~~~~~~~~------~~~~~p-~~~~~~~li 106 (343)
-..+|+.|+.+.-+.+|+...+.| .-|..++..+++..|.. +.++++++.-.. .-+... ...+...|=
T Consensus 24 GERLck~gdcraGv~ff~aA~qvG-TeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG 102 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVG-TEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG 102 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhc-chHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence 456899999999999999988887 67777777777777763 445555443110 000000 000000000
Q ss_pred HHHhhcCCChHHHHHHHHH----HHhcCCC-ccHHHHHHHHHHHHhccCch-------------------hHHHHHHHHH
Q 046547 107 SYTLQSLHPLPLALAILQR----TLRSGCV-PVPQIRLLLSSAWLERRCQS-------------------QSVADILLEM 162 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~----m~~~~~~-p~~~~~~~li~~~~~~~~~~-------------------~~a~~~~~~m 162 (343)
..+.-.|.+++|+-.-.+ .++.|-+ .....+--+-..|..+|+.. +.|.++|.+-
T Consensus 103 -NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 103 -NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred -chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 112223444444332221 1121211 11222223333343333111 1233333322
Q ss_pred ----HhcCCc-cCHhhHHHHHHHHHccCcHHHHHHHHHHh----hhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 046547 163 ----KSIGYH-PDCGTCNYLVSSLCAIDQLVEAAKVLKGM----SSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEM 232 (343)
Q Consensus 163 ----~~~g~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 232 (343)
.+.|-. .--..|..|-+.|.-.|+++.|+..-+.- ++-|-. .-...++.+-+++.-.|+++.|.+.|+.-
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 121211 11246778888888889999998664432 233322 23467889999999999999999988764
Q ss_pred Hh----cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH----c-CCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 233 VL----NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER----K-GCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 233 ~~----~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~-g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
.. -..-.......-+|-+.|.-..++++|+.++.+-.. . ...-....|.+|-.+|...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 32 012233455667788888888889999887775321 1 12224568889999999999999999887765
Q ss_pred hH
Q 046547 304 TE 305 (343)
Q Consensus 304 ~~ 305 (343)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 43
No 362
>PHA02875 ankyrin repeat protein; Provisional
Probab=67.35 E-value=95 Score=27.89 Aligned_cols=208 Identities=12% Similarity=0.028 Sum_probs=96.2
Q ss_pred HHHHhCccCcchHHHHHHHchhcCCCCChH-----HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhc
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPF-----SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS 112 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 112 (343)
+...++.|+.+.+..++ +.|..|+.. |-+...+..+..+.++-+++.... +...+....+.+. ..+.
T Consensus 6 L~~A~~~g~~~iv~~Ll----~~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~--~~~~~~~~~t~L~--~A~~ 77 (413)
T PHA02875 6 LCDAILFGELDIARRLL----DIGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAI--PDVKYPDIESELH--DAVE 77 (413)
T ss_pred HHHHHHhCCHHHHHHHH----HCCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCC--ccccCCCcccHHH--HHHH
Confidence 33444556655544444 345544433 224455566776666666665321 1111112233333 3445
Q ss_pred CCChHHHHHHHHHHHhcCCCc----cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH--HHHHHHHHccCc
Q 046547 113 LHPLPLALAILQRTLRSGCVP----VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC--NYLVSSLCAIDQ 186 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~~~~~~~~ 186 (343)
.|+.+.+..+++ .|... +....+.+..+ +..+ +. ++++.+.+.|..|+.... .+.+...+..|+
T Consensus 78 ~g~~~~v~~Ll~----~~~~~~~~~~~~g~tpL~~A-~~~~-~~----~iv~~Ll~~gad~~~~~~~g~tpLh~A~~~~~ 147 (413)
T PHA02875 78 EGDVKAVEELLD----LGKFADDVFYKDGMTPLHLA-TILK-KL----DIMKLLIARGADPDIPNTDKFSPLHLAVMMGD 147 (413)
T ss_pred CCCHHHHHHHHH----cCCcccccccCCCCCHHHHH-HHhC-CH----HHHHHHHhCCCCCCCCCCCCCCHHHHHHHcCC
Confidence 677766555554 33211 11122334333 3433 34 355555667776654321 233445556777
Q ss_pred HHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhH---HHHHHHHHHhCccHHH
Q 046547 187 LVEAAKVLKGMSSAECVPD---LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVAAALRANREMWK 260 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li~~~~~~~~~~~ 260 (343)
.+-+.-++ +.|..++ ..-.+.|. ..+..|+.+ +.+.+.+ .|..|+... ..+++...+..|+.+
T Consensus 148 ~~~v~~Ll----~~g~~~~~~d~~g~TpL~-~A~~~g~~e----iv~~Ll~-~ga~~n~~~~~~~~t~l~~A~~~~~~~- 216 (413)
T PHA02875 148 IKGIELLI----DHKACLDIEDCCGCTPLI-IAMAKGDIA----ICKMLLD-SGANIDYFGKNGCVAALCYAIENNKID- 216 (413)
T ss_pred HHHHHHHH----hcCCCCCCCCCCCCCHHH-HHHHcCCHH----HHHHHHh-CCCCCCcCCCCCCchHHHHHHHcCCHH-
Confidence 66544443 3444333 22233333 333445544 3444444 366665432 124444445666654
Q ss_pred HHHHHHHHHHcCCCCch
Q 046547 261 AVEMIEFLERKGCPIGF 277 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~ 277 (343)
+.+.+.+.|..++.
T Consensus 217 ---iv~~Ll~~gad~n~ 230 (413)
T PHA02875 217 ---IVRLFIKRGADCNI 230 (413)
T ss_pred ---HHHHHHHCCcCcch
Confidence 34444556666553
No 363
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=67.31 E-value=89 Score=27.57 Aligned_cols=58 Identities=10% Similarity=-0.026 Sum_probs=29.0
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCC----CCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMG----LMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~----~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
++-.++...+.++++++.|+....-.. -.....+|..|-+.|.+.++.++|.-+....
T Consensus 127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA 188 (518)
T KOG1941|consen 127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKA 188 (518)
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhH
Confidence 344555555556666666655442100 1112345555556666666666665555443
No 364
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=66.88 E-value=36 Score=22.92 Aligned_cols=15 Identities=27% Similarity=0.423 Sum_probs=6.8
Q ss_pred CCChhHHHHHHHHHH
Q 046547 219 ARKTNDAVEMMKEMV 233 (343)
Q Consensus 219 ~~~~~~a~~~~~~m~ 233 (343)
.|+.+.|.++++.+.
T Consensus 49 ~g~~~~ar~LL~~L~ 63 (88)
T cd08819 49 HGNESGARELLKRIV 63 (88)
T ss_pred cCcHHHHHHHHHHhc
Confidence 344444444444444
No 365
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=66.87 E-value=47 Score=26.06 Aligned_cols=64 Identities=16% Similarity=0.080 Sum_probs=34.6
Q ss_pred hhHHHHHHHHHHhcCCCCC--chhHH-----HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 046547 222 TNDAVEMMKEMVLNMGLMP--RQGMV-----IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p--~~~~~-----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 289 (343)
.+.|+.+|+.+.+. --.| -.... -..+-.|.+.|.+++|.++++...+ .|+......-+....+
T Consensus 85 LESAl~v~~~I~~E-~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~---d~~~~~~r~kL~~II~ 155 (200)
T cd00280 85 LESALMVLESIEKE-FSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS---DPESQKLRMKLLMIIR 155 (200)
T ss_pred HHHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc---CCCchhHHHHHHHHHH
Confidence 56788888888764 2222 11112 2233456677777777777777665 3444444443433333
No 366
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=65.93 E-value=84 Score=26.77 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=97.5
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 212 (343)
+....+..... ....+ ++.+|...|+......-. +...--.+..+|...|+.+.|..++..+-..--.........-
T Consensus 133 ~~e~~~~~~~~-~~~~e-~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~ 209 (304)
T COG3118 133 EEEEALAEAKE-LIEAE-DFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQ 209 (304)
T ss_pred HHHHHHHHhhh-hhhcc-chhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44555555543 35554 688888888888765322 2455566788999999999999999887654322222333334
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHc--CCCCchhhHHHHHHHHHh
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERK--GCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~ 289 (343)
|..+.+.....+...+-...-.+ | |...--.+...+...|+.+.|.+.+-.+.++ |.. |...-..|++.+.-
T Consensus 210 i~ll~qaa~~~~~~~l~~~~aad----Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~ 284 (304)
T COG3118 210 IELLEQAAATPEIQDLQRRLAAD----PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEA 284 (304)
T ss_pred HHHHHHHhcCCCHHHHHHHHHhC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHh
Confidence 55555556666555555555543 4 6666677788888899999988777666543 332 44555666766666
Q ss_pred cccHh
Q 046547 290 CREYI 294 (343)
Q Consensus 290 ~g~~~ 294 (343)
.|..+
T Consensus 285 ~g~~D 289 (304)
T COG3118 285 FGPAD 289 (304)
T ss_pred cCCCC
Confidence 65443
No 367
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=65.14 E-value=14 Score=31.33 Aligned_cols=46 Identities=7% Similarity=-0.101 Sum_probs=36.6
Q ss_pred CCCchhh-HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHH
Q 046547 273 CPIGFQG-YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318 (343)
Q Consensus 273 ~~p~~~~-~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (343)
+.||..+ |+.-|..-.+.|++++|+++++|.+..|+.--..+|-.-
T Consensus 252 v~~dTe~Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~ 298 (303)
T PRK10564 252 MLNDTESYFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISS 298 (303)
T ss_pred cCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHH
Confidence 4466554 578999999999999999999999999987555555433
No 368
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=64.99 E-value=6.2 Score=28.93 Aligned_cols=28 Identities=18% Similarity=0.248 Sum_probs=14.7
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
|.-.+|..+|++|.+.|-+||. |+.|+.
T Consensus 109 gsk~DaY~VF~kML~~G~pPdd--W~~Ll~ 136 (140)
T PF11663_consen 109 GSKTDAYAVFRKMLERGNPPDD--WDALLK 136 (140)
T ss_pred ccCCcHHHHHHHHHhCCCCCcc--HHHHHH
Confidence 3334455666666666655552 344444
No 369
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=64.91 E-value=52 Score=23.98 Aligned_cols=44 Identities=14% Similarity=0.041 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHH
Q 046547 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLE 161 (343)
Q Consensus 118 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~ 161 (343)
.+.++|..|..+|+--....|-.--..+....+++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 66666666666655444433333222233333456666666543
No 370
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=64.83 E-value=1.4e+02 Score=28.78 Aligned_cols=169 Identities=11% Similarity=-0.011 Sum_probs=104.9
Q ss_pred hhHHHHHHHHH-ccCcHHHHHHHHHHhhhCCCCCCH-----hhHHHHHHHHhcCCChhHHHHHHHHHHhcC---CCCCch
Q 046547 172 GTCNYLVSSLC-AIDQLVEAAKVLKGMSSAECVPDL-----ESYSIVIGAMSTARKTNDAVEMMKEMVLNM---GLMPRQ 242 (343)
Q Consensus 172 ~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~p~~ 242 (343)
.++-.+...+. ...+++.|...+++....--.++. .....++..+.+.+... |...+++..+.. +..+-.
T Consensus 60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~ 138 (608)
T PF10345_consen 60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY 138 (608)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence 34444555554 578899999999976543322322 12345667777777766 998888877532 222333
Q ss_pred hHHHHH-HHHHHhCccHHHHHHHHHHHHHc---CCCCchhhHHHHHHHHH--hcccHhHHHHHHHHHhHCC--C------
Q 046547 243 GMVIKV-AAALRANREMWKAVEMIEFLERK---GCPIGFQGYEVVVEGCL--ECREYILAGKTVMGMTERG--F------ 308 (343)
Q Consensus 243 ~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~g--~------ 308 (343)
..|.-+ +..+...++...|.+.++..... ...|-..++-.++.+.. +.+..+++.+.++++.... +
T Consensus 139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~ 218 (608)
T PF10345_consen 139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSV 218 (608)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCC
Confidence 344444 33333447999999999987653 23444555556666644 4555677777777664321 1
Q ss_pred -CCCHHHHHHHHHHH--hccCChhHHHHHHHHHHhh
Q 046547 309 -IPYIKVRQKVVEGL--AGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 309 -~p~~~~~~~li~~~--~~~g~~~~a~~~~~~m~~~ 341 (343)
.|-..+|..+++.+ ...|+++.+...++++.+.
T Consensus 219 ~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 219 HIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred CcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34566777777754 4678888998888887653
No 371
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=64.82 E-value=9.9 Score=23.69 Aligned_cols=46 Identities=11% Similarity=0.114 Sum_probs=31.0
Q ss_pred HhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.+.+.++++.+... .-|....--+|.+|...|++++|.++++++.+
T Consensus 6 ~~~~~~~~~~lR~~--RHD~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 6 LEELEELIDSLRAQ--RHDFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 34455555555432 22445556788999999999999999988764
No 372
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=64.15 E-value=90 Score=26.52 Aligned_cols=46 Identities=7% Similarity=-0.005 Sum_probs=25.3
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhH-------HHHHHHHhcCCChhH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESY-------SIVIGAMSTARKTND 224 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~ll~~~~~~~~~~~ 224 (343)
+-..+.+++++|...+.+....|+..|..+. ..+...|+..|+...
T Consensus 11 ~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~ 63 (421)
T COG5159 11 NNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCS 63 (421)
T ss_pred HHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcch
Confidence 3445566666677666666666665554432 234444555554443
No 373
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=64.08 E-value=42 Score=22.64 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=37.0
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+.+++..+.++|+- +..-...+-.+-...|+.+.|.+++..+. +| | .-|..++.++...|.-+-|.+
T Consensus 21 ~~~v~d~ll~~~il-T~~d~e~I~aa~~~~g~~~~ar~LL~~L~-rg--~--~aF~~Fl~aLreT~~~~LA~e 87 (88)
T cd08819 21 TRDVCDKCLEQGLL-TEEDRNRIEAATENHGNESGARELLKRIV-QK--E--GWFSKFLQALRETEHHELARE 87 (88)
T ss_pred HHHHHHHHHhcCCC-CHHHHHHHHHhccccCcHHHHHHHHHHhc-cC--C--cHHHHHHHHHHHcCchhhhhc
Confidence 34556666666643 22222222222235577777777777776 44 2 346677777777776655543
No 374
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=63.79 E-value=92 Score=26.49 Aligned_cols=31 Identities=10% Similarity=0.145 Sum_probs=16.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCchhH
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 244 (343)
.+-.++.+++++|+..+.++..+ |+..|..+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~k-g~s~dek~ 40 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGK-GVSKDEKT 40 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcC-CCChhhhh
Confidence 34445555555555555555553 55555443
No 375
>KOG1114 consensus Tripeptidyl peptidase II [Posttranslational modification, protein turnover, chaperones]
Probab=63.51 E-value=1.7e+02 Score=29.49 Aligned_cols=52 Identities=12% Similarity=0.150 Sum_probs=25.5
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
|..++..-...+...|++..|++++.++.++.|-.++...|..++..+...|
T Consensus 1230 dsK~~~~a~~ha~~~~~yGr~lK~l~kliee~~es~t~~~~~~~~el~~~Lg 1281 (1304)
T KOG1114|consen 1230 DSKVWQIAKKHAKALGQYGRALKALLKLIEENGESATKDVAVLLAELLENLG 1281 (1304)
T ss_pred CchheehhHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhC
Confidence 3444444444444555555555555555544444555555544444433333
No 376
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=63.13 E-value=61 Score=24.32 Aligned_cols=63 Identities=19% Similarity=0.147 Sum_probs=35.8
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 121 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
++.+.+++.|++++..= ..++..+.+..+ .-.|.++++++.+.+...+..|--.-+..+...|
T Consensus 7 ~~~~~lk~~glr~T~qR-~~vl~~L~~~~~-~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 7 DAIERLKEAGLRLTPQR-LAVLELLLEADG-HLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHHcCCCcCHHH-HHHHHHHHhcCC-CCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 34455667777766554 344455455443 3567888888877666555544333345555444
No 377
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=62.99 E-value=74 Score=26.64 Aligned_cols=106 Identities=13% Similarity=0.026 Sum_probs=0.0
Q ss_pred hcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHh-H
Q 046547 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI-L 295 (343)
Q Consensus 217 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~-~ 295 (343)
++.+++++|++++.+-.. .+++.=.-.--.|.|.-+++-..+.+.++|......++..+...+.-+ +
T Consensus 1 v~~kky~eAidLL~~Ga~------------~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~ 68 (260)
T PF04190_consen 1 VKQKKYDEAIDLLYSGAL------------ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE 68 (260)
T ss_dssp HHTT-HHHHHHHHHHHHH------------HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT
T ss_pred CccccHHHHHHHHHHHHH------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch
Q ss_pred HHHHHHHHhHCCCCC------CHHHHHHHHHHHhccCChhHHHHHH
Q 046547 296 AGKTVMGMTERGFIP------YIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 296 a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
-.++.+.+...- .+ |+.....+...|.+.|++.+|+..|
T Consensus 69 r~~fi~~ai~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hf 113 (260)
T PF04190_consen 69 RKKFIKAAIKWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHF 113 (260)
T ss_dssp HHHHHHHHHHHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHH
No 378
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=62.53 E-value=67 Score=30.74 Aligned_cols=120 Identities=11% Similarity=0.027 Sum_probs=71.3
Q ss_pred HHHHHHHhccCchhHHHHHHHHHHhc--CCccCHhhHHHHHHHHHccCcHHHH--HH-HHHHhhhCCCCCCHhhHHHHHH
Q 046547 140 LLSSAWLERRCQSQSVADILLEMKSI--GYHPDCGTCNYLVSSLCAIDQLVEA--AK-VLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 140 ~li~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~~~a--~~-~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
+|+.+|...| ++..+.++++.+..+ |-+.=...||..|+...+.|.++-. .+ .=+.+++..+.-|..||..++.
T Consensus 33 sl~eacv~n~-~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a~ln~d~~t~all~~ 111 (1117)
T COG5108 33 SLFEACVYNG-DFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQARLNGDSLTYALLCQ 111 (1117)
T ss_pred HHHHHHHhcc-hHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHhhcCCcchHHHHHHH
Confidence 7788877765 788899999888754 2233345688888999998876421 11 1122233346668889988888
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC--ccHHHHHHHHHHH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN--REMWKAVEMIEFL 268 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m 268 (343)
+-...-+-.-..-++.+.... .-|.++..+... =.+++..-+++++
T Consensus 112 ~sln~t~~~l~~pvl~~~i~~--------s~ngv~di~~~~~v~s~~ev~limd~l 159 (1117)
T COG5108 112 ASLNPTQRQLGLPVLHELIHR--------SANGVIDILMHESVFSPEEVKLIMDQL 159 (1117)
T ss_pred hhcChHhHHhccHHHHHHHHh--------hhhhHHHHHhhhccCCHHHHHHHHHhc
Confidence 776644444455555555532 223344433332 2455555555544
No 379
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=62.36 E-value=77 Score=25.12 Aligned_cols=108 Identities=15% Similarity=0.121 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc--CCCCchhhHHHHHH-HHHhccc--HhHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK--GCPIGFQGYEVVVE-GCLECRE--YILAG 297 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~li~-~~~~~g~--~~~a~ 297 (343)
++++++.+++.. ++...-...+.|++++|.+-++++.+. .++.-...|.-+.. +++..+. +-+|.
T Consensus 20 EE~l~lsRei~r----------~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~ 89 (204)
T COG2178 20 EEALKLSREIVR----------LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEAT 89 (204)
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHH
Confidence 445555555553 233334445666677776666655432 11111223333333 4555443 44555
Q ss_pred HHHHHHhHCCCCCC-------HHHH-----------HHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 298 KTVMGMTERGFIPY-------IKVR-----------QKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 298 ~~~~~m~~~g~~p~-------~~~~-----------~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
-++.-+.+.+ .|+ +..| ...+--..+.|+++.|.++++-|.++
T Consensus 90 ~l~~~l~~~~-~ps~~EL~V~~~~YilGl~D~vGELrR~~le~l~~~~~~~Ae~~~~~ME~l 150 (204)
T COG2178 90 LLYSILKDGR-LPSPEELGVPPIAYILGLADAVGELRRHVLELLRKGSFEEAERFLKFMEKL 150 (204)
T ss_pred HHHHHHhcCC-CCCHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5555554432 222 1112 11122345678899999988888764
No 380
>COG5108 RPO41 Mitochondrial DNA-directed RNA polymerase [Transcription]
Probab=61.57 E-value=48 Score=31.60 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=61.5
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhc-CCCCCchhHHHHHHHHHHhCccHH------HHHHHHHHHHHcCCCCchhhHHHH
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLN-MGLMPRQGMVIKVAAALRANREMW------KAVEMIEFLERKGCPIGFQGYEVV 283 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~~~~~~~------~a~~~~~~m~~~g~~p~~~~~~~l 283 (343)
+|+.+|..+|++-++.++++..... .|-+.-...||..|+...+.|.++ .|.++++.. .+.-|..||..|
T Consensus 33 sl~eacv~n~~~~rs~~ll~s~~~~~~~~k~~l~~~nlyi~~~~q~~sf~l~~~~~~~~~~lq~a---~ln~d~~t~all 109 (1117)
T COG5108 33 SLFEACVYNGDFLRSKQLLKSFIDHNKGDKILLPMINLYIREIIQRGSFELTDVLSNAKELLQQA---RLNGDSLTYALL 109 (1117)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCcCCeeehhHHHHHHHHHHhcCCccHHHHHHHHHHHHHHh---hcCCcchHHHHH
Confidence 7899999999999999999988742 123333456888888889998765 233333332 356688899988
Q ss_pred HHHHHhcccHhHHHHHHHHHhH
Q 046547 284 VEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+++-...-.-...+-++.+++.
T Consensus 110 ~~~sln~t~~~l~~pvl~~~i~ 131 (1117)
T COG5108 110 CQASLNPTQRQLGLPVLHELIH 131 (1117)
T ss_pred HHhhcChHhHHhccHHHHHHHH
Confidence 8876664443444444444443
No 381
>COG2137 OraA Uncharacterized protein conserved in bacteria [General function prediction only]
Probab=60.99 E-value=77 Score=24.67 Aligned_cols=106 Identities=11% Similarity=0.081 Sum_probs=42.0
Q ss_pred HHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 046547 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237 (343)
Q Consensus 158 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 237 (343)
++..+.+.|.--|..--...+..-.+.| ..-..+..++.+.|+ +..+....+..+......+.|..++..-....+
T Consensus 57 Vi~~l~~~~~ldD~~fAe~~i~~r~~~g--~G~~rl~qeL~qkGi--~~~~Ie~aL~~~~~~~~~~~a~~~~~kk~~~~~ 132 (174)
T COG2137 57 VIDRLAEEGYLDDTRFAEAYIRSRSRKG--KGPARLKQELKQKGI--DDEIIEEALELIDEEDEQERARKVLRKKFKREN 132 (174)
T ss_pred HHHHHHHcCcccHHHHHHHHHHHHHhcc--cChHHHHHHHHHcCC--CHHHHHHHHhccchHHHHHHHHHHHHHHhCccc
Confidence 3333333443333333333333333333 223334444555553 233333444444444444444444444332222
Q ss_pred CCCchhHHHHHHHHHHhCc-cHHHHHHHHHH
Q 046547 238 LMPRQGMVIKVAAALRANR-EMWKAVEMIEF 267 (343)
Q Consensus 238 ~~p~~~~~~~li~~~~~~~-~~~~a~~~~~~ 267 (343)
.+|+..-..-+...+...| .++.+..++..
T Consensus 133 ~~~~~~~k~Ki~r~L~~rGFs~~~i~~~l~~ 163 (174)
T COG2137 133 KPPDKKEKAKIQRFLLRRGFSYEVIKEALNE 163 (174)
T ss_pred cCcchhHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3344444444444444333 33333333333
No 382
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.20 E-value=16 Score=21.93 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=16.3
Q ss_pred HHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 318 VVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 318 li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
+--++.+.|++++|.+..+.+.+.+|
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~~eP 32 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLEIEP 32 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhhhHHHHHHHHHHHHhhCC
Confidence 34466777777777777777666543
No 383
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=60.11 E-value=57 Score=22.90 Aligned_cols=20 Identities=20% Similarity=0.260 Sum_probs=8.3
Q ss_pred HHHHHccCcHHHHHHHHHHh
Q 046547 178 VSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m 197 (343)
|..|...|+.++|...+.++
T Consensus 9 l~ey~~~~d~~ea~~~l~el 28 (113)
T PF02847_consen 9 LMEYFSSGDVDEAVECLKEL 28 (113)
T ss_dssp HHHHHHHT-HHHHHHHHHHT
T ss_pred HHHHhcCCCHHHHHHHHHHh
Confidence 33444444444444444443
No 384
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=59.27 E-value=41 Score=21.21 Aligned_cols=48 Identities=6% Similarity=0.128 Sum_probs=24.6
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
|+...++.++..+++..-.++++..+.+..+.|. .+..+|---++.++
T Consensus 6 ~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~La 53 (65)
T PF09454_consen 6 AEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLA 53 (65)
T ss_dssp -SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 4445556666666666666666666666655554 23344444344333
No 385
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=58.62 E-value=32 Score=21.73 Aligned_cols=55 Identities=15% Similarity=-0.165 Sum_probs=43.8
Q ss_pred CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 273 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
+.|+...++.++..+++-.-.++++..+.+....|. .+..+|-.-++.+++.--+
T Consensus 4 v~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaReQF~ 58 (65)
T PF09454_consen 4 VVAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAREQFL 58 (65)
T ss_dssp EE-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHHHH
Confidence 346777889999999999999999999999999985 5678888888877765433
No 386
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=58.13 E-value=61 Score=22.61 Aligned_cols=87 Identities=11% Similarity=0.101 Sum_probs=55.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 300 (343)
..++|..|-+-+... +-. ...+--+=+..+...|++++|..+.+.+ ..||...|-+|-. .+.|-.+++..-+
T Consensus 20 cHqEA~tIAdwL~~~-~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce--~rlGl~s~l~~rl 91 (115)
T TIGR02508 20 CHQEANTIADWLHLK-GES-EEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCE--WRLGLGSALESRL 91 (115)
T ss_pred HHHHHHHHHHHHhcC-Cch-HHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHH--HhhccHHHHHHHH
Confidence 357788887777753 222 2222223344567788888888877765 4788888766643 3677777777777
Q ss_pred HHHhHCCCCCCHHHHH
Q 046547 301 MGMTERGFIPYIKVRQ 316 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~ 316 (343)
.+|...| .|....|.
T Consensus 92 ~rla~sg-~p~lq~Fa 106 (115)
T TIGR02508 92 NRLAASG-DPRLQTFV 106 (115)
T ss_pred HHHHhCC-CHHHHHHH
Confidence 7777777 45544443
No 387
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=57.58 E-value=85 Score=26.93 Aligned_cols=43 Identities=9% Similarity=0.080 Sum_probs=20.1
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
++|+.++++ ++.|.-..+..+.-.+...=.+.++..+|+.+..
T Consensus 264 EL~~~L~~~-~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s 306 (370)
T KOG4567|consen 264 ELWRHLEEK-EIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS 306 (370)
T ss_pred HHHHHHHhc-CCCccchhHHHHHHHHhccCCchhHHHHHHHHhc
Confidence 444444442 4555444444444444444444444555554443
No 388
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=57.31 E-value=82 Score=24.77 Aligned_cols=48 Identities=19% Similarity=0.225 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhhCCCCCCH--h-----hHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 187 LVEAAKVLKGMSSAECVPDL--E-----SYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~--~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
++.|+.+|+.+.+.--.|.. . .--..+-.|.+.|.+++|.++++....
T Consensus 85 LESAl~v~~~I~~E~~~~~~lhe~i~~lik~~aV~VCm~~g~Fk~A~eiLkr~~~ 139 (200)
T cd00280 85 LESALMVLESIEKEFSLPETLHEEIRKLIKEQAVAVCMENGEFKKAEEVLKRLFS 139 (200)
T ss_pred HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHhc
Confidence 45566666655544322211 1 112344567788888888888887764
No 389
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=57.04 E-value=59 Score=22.08 Aligned_cols=19 Identities=11% Similarity=-0.067 Sum_probs=11.8
Q ss_pred HHhcccHhHHHHHHHHHhH
Q 046547 287 CLECREYILAGKTVMGMTE 305 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~ 305 (343)
....|++++|.+.+++.++
T Consensus 51 ~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 51 HRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHhCCHHHHHHHHHHHHH
Confidence 4556666666666666554
No 390
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=56.43 E-value=76 Score=27.22 Aligned_cols=71 Identities=6% Similarity=0.101 Sum_probs=54.5
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh----------CccHHH
Q 046547 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA----------NREMWK 260 (343)
Q Consensus 191 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----------~~~~~~ 260 (343)
.++|+.|...++.|.-.+|.-+.-.+...=.+.+++.+|+.+..+ ..-|..|+..||. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~sD------~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLSD------PQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhcC------hhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 467888888889998888888888888888888999999998863 2226666666653 578888
Q ss_pred HHHHHHH
Q 046547 261 AVEMIEF 267 (343)
Q Consensus 261 a~~~~~~ 267 (343)
.++++..
T Consensus 337 nmkLLQ~ 343 (370)
T KOG4567|consen 337 NMKLLQN 343 (370)
T ss_pred HHHHHhc
Confidence 8887765
No 391
>PRK09462 fur ferric uptake regulator; Provisional
Probab=55.77 E-value=85 Score=23.53 Aligned_cols=62 Identities=11% Similarity=0.064 Sum_probs=35.6
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 125 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
.+.+.|++++..- ..++..+....+..-.|.++++.+.+.+...+..|----|..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3556677666544 3334444433222346788888887777666666555555666666543
No 392
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=55.05 E-value=73 Score=24.64 Aligned_cols=55 Identities=9% Similarity=-0.013 Sum_probs=25.1
Q ss_pred CCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 237 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
|+.++..= ..++..+...++.-.|.++++.+.+.+..++..|.=.-+..+...|-
T Consensus 21 GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Gl 75 (169)
T PRK11639 21 NVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGF 75 (169)
T ss_pred CCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCC
Confidence 55444322 23444444444445566666666655544444432223444444443
No 393
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=54.58 E-value=2e+02 Score=27.38 Aligned_cols=60 Identities=7% Similarity=0.008 Sum_probs=30.7
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g 166 (343)
...|..+++ .+.. =+.+.-.++++++.. . + ...+..++.++...|. ..|..++.++...+
T Consensus 310 ~~~f~~lv~-~lR~-~~~e~l~~l~~~~~~-~--~-~~~r~~~~Dal~~~GT--~~a~~~i~~~i~~~ 369 (574)
T smart00638 310 AAKFLRLVR-LLRT-LSEEQLEQLWRQLYE-K--K-KKARRIFLDAVAQAGT--PPALKFIKQWIKNK 369 (574)
T ss_pred HHHHHHHHH-HHHh-CCHHHHHHHHHHHHh-C--C-HHHHHHHHHHHHhcCC--HHHHHHHHHHHHcC
Confidence 445666664 4433 345666666666543 1 1 4455666666555542 34555544444444
No 394
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=54.20 E-value=65 Score=21.68 Aligned_cols=41 Identities=15% Similarity=0.036 Sum_probs=17.1
Q ss_pred HHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHh
Q 046547 157 DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 157 ~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
++|+-....|+..|...|..++....-+--++...++++.|
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m 69 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSM 69 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 34444444444444444444444443333444444444443
No 395
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=53.70 E-value=90 Score=25.43 Aligned_cols=98 Identities=18% Similarity=0.180 Sum_probs=57.2
Q ss_pred CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC---CHhhH--HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc
Q 046547 167 YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP---DLESY--SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241 (343)
Q Consensus 167 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 241 (343)
+.++..-+|.|+--|.-...+.+|.+.|.. ..|+.| |..++ ..-|......|+.+.|++...++.-+ -+.-|
T Consensus 22 ~~~~~~d~n~LVmnylv~eg~~EaA~~Fa~--e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n 98 (228)
T KOG2659|consen 22 VSVMREDLNRLVMNYLVHEGYVEAAEKFAK--ESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTN 98 (228)
T ss_pred cCcchhhHHHHHHHHHHhccHHHHHHHhcc--ccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccc
Confidence 455555666666666555555556666643 345544 23332 35577778889999998888887643 44444
Q ss_pred hhHHHHHHH----HHHhCccHHHHHHHHHH
Q 046547 242 QGMVIKVAA----ALRANREMWKAVEMIEF 267 (343)
Q Consensus 242 ~~~~~~li~----~~~~~~~~~~a~~~~~~ 267 (343)
...+--|.. -+.+.|..++|+++...
T Consensus 99 ~~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 99 RELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hhHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 433333322 24566677777766654
No 396
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=52.45 E-value=1.6e+02 Score=25.71 Aligned_cols=69 Identities=10% Similarity=0.206 Sum_probs=47.6
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcC--CCCCchhHH--HHHHHHHHhCccHHHHHHHHHHHHH-----cCCCCchh
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNM--GLMPRQGMV--IKVAAALRANREMWKAVEMIEFLER-----KGCPIGFQ 278 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~p~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~ 278 (343)
-.++...-+.++.++|+++++++.++. --.|+...| ..+...+...|+..++.+++.+..+ .|++|+++
T Consensus 79 ei~l~~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh 156 (380)
T KOG2908|consen 79 EILLVVSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVH 156 (380)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhh
Confidence 345556666778899999999888631 224555555 4455666777888888888888776 57777555
No 397
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=52.11 E-value=2.4e+02 Score=27.62 Aligned_cols=86 Identities=9% Similarity=0.118 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh-hhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC---CC----------CchhHHHHHHHHH
Q 046547 187 LVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG---LM----------PRQGMVIKVAAAL 252 (343)
Q Consensus 187 ~~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~----------p~~~~~~~li~~~ 252 (343)
.++..+.+... .+.|+..+......++... .|+...++.+++++.. .| +. ++......|+.++
T Consensus 180 ~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A--~GslRdAlnLLDqaia-~g~g~It~e~V~~lLG~~d~~~If~LldAL 256 (709)
T PRK08691 180 AQQVADHLAHVLDSEKIAYEPPALQLLGRAA--AGSMRDALSLLDQAIA-LGSGKVAENDVRQMIGAVDKQYLYELLTGI 256 (709)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHh--CCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcccCHHHHHHHHHHH
Confidence 34445555443 4567777777776666554 5888999999888764 22 11 1222334445544
Q ss_pred HhCccHHHHHHHHHHHHHcCCCCc
Q 046547 253 RANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
.. ++...++.+++++.+.|+.+.
T Consensus 257 ~~-~d~~~al~~l~~L~~~G~d~~ 279 (709)
T PRK08691 257 IN-QDGAALLAKAQEMAACAVGFD 279 (709)
T ss_pred Hc-CCHHHHHHHHHHHHHhCCCHH
Confidence 43 667778888888877776543
No 398
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=51.43 E-value=78 Score=24.46 Aligned_cols=60 Identities=12% Similarity=-0.056 Sum_probs=27.5
Q ss_pred HHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 126 TLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 126 m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
+++.|++++..-. .++..+....+ .-.|.++++.+.+.+..++..|--.-|..+...|-+
T Consensus 17 L~~~GlR~T~qR~-~IL~~l~~~~~-hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 17 CAQRNVRLTPQRL-EVLRLMSLQPG-AISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHHcCCCCCHHHH-HHHHHHHhcCC-CCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 3445555444432 22333333332 224566666665555555544443344555555433
No 399
>PF02631 RecX: RecX family; InterPro: IPR003783 RecX is a putative bacterial regulatory protein []. The gene encoding RecX is found downstream of recA, and it is suggested that the RecX protein might be regulator of RecA activity by interaction with the RecA protein or filament [].; GO: 0006282 regulation of DNA repair; PDB: 3DFG_A 3D5L_B 3C1D_B 3E3V_A.
Probab=51.27 E-value=89 Score=22.41 Aligned_cols=26 Identities=8% Similarity=0.042 Sum_probs=10.6
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHH
Q 046547 119 ALAILQRTLRSGCVPVPQIRLLLSSA 144 (343)
Q Consensus 119 a~~~~~~m~~~~~~p~~~~~~~li~~ 144 (343)
+..+++.+.+.|+--|..-....+..
T Consensus 11 I~~vi~~l~~~gyidD~~ya~~~v~~ 36 (121)
T PF02631_consen 11 IEEVIDRLKELGYIDDERYAESYVRS 36 (121)
T ss_dssp HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 34444444444444333333333333
No 400
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=50.16 E-value=2.6e+02 Score=28.62 Aligned_cols=117 Identities=9% Similarity=0.048 Sum_probs=63.8
Q ss_pred cCCChHHHHHHHHHHHhcCCC------ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH-------
Q 046547 112 SLHPLPLALAILQRTLRSGCV------PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV------- 178 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~------p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll------- 178 (343)
..+++.+|..+.++ +.+. -+...|-.-+..+.+.-++.+-...++..+.+..+.- ..|....
T Consensus 706 d~~~Y~~Af~~~Rk---hRIdlNll~Dh~p~~Fl~ni~~Fv~qi~~~~~lnLFls~L~~EDvt~--tmY~~~~~~~~~~~ 780 (928)
T PF04762_consen 706 DAKDYKEAFELCRK---HRIDLNLLYDHNPEQFLENIELFVEQIKDVDYLNLFLSSLRNEDVTK--TMYKDTYPPSSEAQ 780 (928)
T ss_pred hhccHHHHHHHHHH---hccccceEEECCHHHHHHHHHHHHHhcCCHHHHHHHHHhcccccccc--cccccccccccccc
Confidence 45677776655443 3332 2445555556666666555554445555555432211 2222221
Q ss_pred -----HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC--ChhHHHHHHHHHHh
Q 046547 179 -----SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR--KTNDAVEMMKEMVL 234 (343)
Q Consensus 179 -----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~ 234 (343)
......+++....+.+.+...... -...-...+|.+|++.+ ++++|+....++.+
T Consensus 781 ~~~~~~~~~~~~KVn~ICdair~~l~~~~-~~~~~l~~IlTa~vkk~Pp~le~aL~~I~~l~~ 842 (928)
T PF04762_consen 781 PNSNSSTASSESKVNKICDAIRKALEKPK-DKDKYLQPILTAYVKKSPPDLEEALQLIKELRE 842 (928)
T ss_pred cccccCCCccccHHHHHHHHHHHHhcccc-cchhhHHHHHHHHHhcCchhHHHHHHHHHHHHh
Confidence 222334455666655554443211 22334567888888888 88999999999885
No 401
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=49.93 E-value=53 Score=23.20 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=18.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhh
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 199 (343)
-|..|+..|...|..++|++++.+...
T Consensus 41 ~~~eL~~lY~~kg~h~~AL~ll~~l~~ 67 (108)
T PF10366_consen 41 KYQELVDLYQGKGLHRKALELLKKLAD 67 (108)
T ss_pred CHHHHHHHHHccCccHHHHHHHHHHhc
Confidence 466677777777777777777776665
No 402
>PRK09462 fur ferric uptake regulator; Provisional
Probab=49.77 E-value=1e+02 Score=23.16 Aligned_cols=16 Identities=19% Similarity=0.058 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHcCC
Q 046547 258 MWKAVEMIEFLERKGC 273 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~ 273 (343)
.-.|.++++.+.+.+.
T Consensus 33 h~sa~eI~~~l~~~~~ 48 (148)
T PRK09462 33 HVSAEDLYKRLIDMGE 48 (148)
T ss_pred CCCHHHHHHHHHhhCC
Confidence 4455555555554443
No 403
>PF08870 DUF1832: Domain of unknown function (DUF1832); InterPro: IPR014969 This entry describes the DndE protein encoded by an operon associated with a sulphur-containing modification to DNA []. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=49.26 E-value=45 Score=23.83 Aligned_cols=28 Identities=21% Similarity=0.258 Sum_probs=15.4
Q ss_pred hHHHHHHHHHHhcCCCCC-chhHHHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMP-RQGMVIKVAA 250 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p-~~~~~~~li~ 250 (343)
+++.+.+..+..+.|+.| ++..--++..
T Consensus 6 ~~~~~~L~~Lk~~tgi~~~Nil~R~A~~~ 34 (113)
T PF08870_consen 6 KKAKEQLKKLKRRTGITPWNILCRIAFCR 34 (113)
T ss_pred HHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 455666666666666666 4444333333
No 404
>PRK14700 recombination factor protein RarA; Provisional
Probab=49.24 E-value=1.7e+02 Score=25.09 Aligned_cols=82 Identities=12% Similarity=0.002 Sum_probs=48.4
Q ss_pred HHHHHHc---cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChh-----HHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 177 LVSSLCA---IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN-----DAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 177 ll~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~-----~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
+|+++-+ -.|++.|+-.+.+|.+.|..|....=..++.++-..|.-+ .|...++.... -|.+--.......
T Consensus 129 ~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~~IaRRLii~AsEDIGlAdP~al~~a~aa~~A~~~-iG~PEa~i~La~a 207 (300)
T PRK14700 129 QLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPLVIARRMLCIASEDIGNADPQALRVAMDAWNAYEK-LGMPEGRLVLAQA 207 (300)
T ss_pred HHHHHHHHhhcCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHH-hCChHHHHHHHHH
Confidence 4566654 3577888888888888887777777777777777766433 34555555554 4654433333333
Q ss_pred HHHHHhCccHH
Q 046547 249 AAALRANREMW 259 (343)
Q Consensus 249 i~~~~~~~~~~ 259 (343)
+-.++.+-+..
T Consensus 208 viyLA~aPKSN 218 (300)
T PRK14700 208 AIYLAVAPKSN 218 (300)
T ss_pred HHHHHcCCCch
Confidence 33344443333
No 405
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.19 E-value=2.3e+02 Score=26.57 Aligned_cols=86 Identities=12% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHH-hhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC---CC----------CchhHHHHHHHHHH
Q 046547 188 VEAAKVLKG-MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG---LM----------PRQGMVIKVAAALR 253 (343)
Q Consensus 188 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~----------p~~~~~~~li~~~~ 253 (343)
++..+.+.. +.+.|+..+......++.. ..|+...|..++++... +| +. ++......++.++
T Consensus 181 ~~i~~~l~~il~~egi~~~~~al~~ia~~--s~GslR~al~lLdq~ia-~~~~~It~~~V~~~lg~~~~~~i~~ll~al- 256 (509)
T PRK14958 181 LQIAAHCQHLLKEENVEFENAALDLLARA--ANGSVRDALSLLDQSIA-YGNGKVLIADVKTMLGTIEPLLLFDILEAL- 256 (509)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCcHHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCCCHHHHHHHHHHH-
Confidence 333333333 3456776666666555544 35888888888877664 23 11 1222233334443
Q ss_pred hCccHHHHHHHHHHHHHcCCCCch
Q 046547 254 ANREMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~~ 277 (343)
..++.+.++.++++|.+.|..|..
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~~~ 280 (509)
T PRK14958 257 AAKAGDRLLGCVTRLVEQGVDFSN 280 (509)
T ss_pred HcCCHHHHHHHHHHHHHcCCCHHH
Confidence 336677777777777777766543
No 406
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=48.78 E-value=1.5e+02 Score=24.24 Aligned_cols=97 Identities=9% Similarity=-0.045 Sum_probs=45.7
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC---chhHH--HHHHHHHHhCccHHHHHHHHHHHHHcCCCCch
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP---RQGMV--IKVAAALRANREMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p---~~~~~--~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 277 (343)
.++..-+|.|+--|.-...+.+|...|..- .|+.| |..++ ..-|......|+++.|.+..+...-.-+.-|.
T Consensus 23 ~~~~~d~n~LVmnylv~eg~~EaA~~Fa~e---~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~ 99 (228)
T KOG2659|consen 23 SVMREDLNRLVMNYLVHEGYVEAAEKFAKE---SGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNR 99 (228)
T ss_pred CcchhhHHHHHHHHHHhccHHHHHHHhccc---cCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccch
Confidence 344444555544444444444444444331 34444 22222 33455666777777777777665433233332
Q ss_pred hhHHHHHH----HHHhcccHhHHHHHHHH
Q 046547 278 QGYEVVVE----GCLECREYILAGKTVMG 302 (343)
Q Consensus 278 ~~~~~li~----~~~~~g~~~~a~~~~~~ 302 (343)
..+-.|.. -..+.|..++|+++.+.
T Consensus 100 ~l~F~Lq~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 100 ELFFHLQQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred hHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 22222211 14456666666666553
No 407
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=48.04 E-value=45 Score=23.60 Aligned_cols=45 Identities=22% Similarity=0.139 Sum_probs=21.9
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
++..+...+..-.|.++++.+.+.+..++..|.=..++.+...|-
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gl 50 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGL 50 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCC
Confidence 344444444455566666666655544444443333444444443
No 408
>PRK09857 putative transposase; Provisional
Probab=47.09 E-value=1.8e+02 Score=24.84 Aligned_cols=63 Identities=13% Similarity=0.178 Sum_probs=25.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCC
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP 274 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 274 (343)
..+++.....++.++..++++.+.+ ..++.....-++..-+...|.-+++.++...|...|+.
T Consensus 210 ~~ll~Yi~~~~~~~~~~~~~~~l~~--~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~ 272 (292)
T PRK09857 210 KGLFNYILQTGDAVRFNDFIDGVAE--RSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVP 272 (292)
T ss_pred HHHHHHHhhccccchHHHHHHHHHH--hCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 3444444444554444555544443 12222222223333333334334444444444444443
No 409
>PF02847 MA3: MA3 domain; InterPro: IPR003891 This entry represents the MI domain (after MA-3 and eIF4G), it is a protein-protein interaction module of ~130 amino acids [, , ]. It appears in several translation factors and is found in: One copy in plant and animal eIF4G 1 and 2 (DAP-5/NAT1/p97) Two copies in the animal programmed cell death protein 4 (PDCD4) or MA-3 that is induced during programmed cell death and inhibits neoplastic transformation Four tandem-repeated copies in a group of uncharacterised plant proteins The MI domain consists of seven alpha-helices, which pack into a globular form. The packing arrangement consists of repeating pairs of antiparallel helices packed one upon the other such that a superhelical axis is generated perpendicular to the alpha-helical axes []. The MI domain has also been named MA3 domain.; PDB: 2ION_A 2IOL_B 2NSZ_A 3EIQ_C 2HM8_A 2KZT_B 2IOS_A 2RG8_B 2ZU6_E 3EIJ_A ....
Probab=46.66 E-value=66 Score=22.59 Aligned_cols=62 Identities=13% Similarity=0.113 Sum_probs=31.7
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCC
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCP 274 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~ 274 (343)
..++..|...|+.++|..-+.++.. . .--......++..+...+ .-+.+..++..+.+.+..
T Consensus 6 ~~~l~ey~~~~d~~ea~~~l~el~~--~-~~~~~vv~~~l~~~le~~~~~r~~~~~Ll~~L~~~~~~ 69 (113)
T PF02847_consen 6 FSILMEYFSSGDVDEAVECLKELKL--P-SQHHEVVKVILECALEEKKSYREYYSKLLSHLCKRKLI 69 (113)
T ss_dssp HHHHHHHHHHT-HHHHHHHHHHTT---G-GGHHHHHHHHHHHHHTSSHHHHHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCC--C-ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhcCCC
Confidence 3455666677788888877777543 1 112223344444444432 333445666666655543
No 410
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.45 E-value=2e+02 Score=28.86 Aligned_cols=161 Identities=12% Similarity=-0.001 Sum_probs=90.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCC---CCCCHhhHHHHHHHHhcCCCh--hHHHHHHHHHHhc-----------
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAE---CVPDLESYSIVIGAMSTARKT--NDAVEMMKEMVLN----------- 235 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~----------- 235 (343)
.-|..|+..|...|+.++|+++|.+..+.- ..--..-+--++.-+.+.+.. +-.+++-+....+
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~ 584 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTS 584 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeec
Confidence 458899999999999999999999987632 111112233344444444433 3333333333221
Q ss_pred ------CCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc--------HhHHHHH--
Q 046547 236 ------MGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE--------YILAGKT-- 299 (343)
Q Consensus 236 ------~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--------~~~a~~~-- 299 (343)
..+.++ .+-.|++....+.+...++.+....-.++..-.+.++..|++.=+ .+++.+.
T Consensus 585 ~~~~~~~sis~~------~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e~v~~~~~~~~kg~e~~E~~~ 658 (877)
T KOG2063|consen 585 EDKQEAESISRD------DVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLEKVLEQASTDGKGEEAPETTV 658 (877)
T ss_pred cChhhhccCCHH------HHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHHHHhhccCchhccccchhhhH
Confidence 122221 233456777788889999998877666677777778877765322 2333333
Q ss_pred HH---HHhH--CCCCCC--------HHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 300 VM---GMTE--RGFIPY--------IKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 300 ~~---~m~~--~g~~p~--------~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
-+ .+.+ ..+.|. ..-|...---+.+.|+.++|..++-..
T Consensus 659 rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv~~ 710 (877)
T KOG2063|consen 659 REKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYVHE 710 (877)
T ss_pred HHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 11 1211 133332 222332222344888999988876543
No 411
>PF07678 A2M_comp: A-macroglobulin complement component; InterPro: IPR011626 This domain covers the complement component region of the alpha-2-macroglobulin family. The alpha-macroglobulin (aM) family of proteins includes protease inhibitors [], typified by the human tetrameric a2-macroglobulin (a2M); they belong to the MEROPS proteinase inhibitor family I39, clan IL. These protease inhibitors share several defining properties, which include (i) the ability to inhibit proteases from all catalytic classes, (ii) the presence of a 'bait region' and a thiol ester, (iii) a similar protease inhibitory mechanism and (iv) the inactivation of the inhibitory capacity by reaction of the thiol ester with small primary amines. aM protease inhibitors inhibit by steric hindrance []. The mechanism involves protease cleavage of the bait region, a segment of the aM that is particularly susceptible to proteolytic cleavage, which initiates a conformational change such that the aM collapses about the protease. In the resulting aM-protease complex, the active site of the protease is sterically shielded, thus substantially decreasing access to protein substrates. Two additional events occur as a consequence of bait region cleavage, namely (i) the h-cysteinyl-g-glutamyl thiol ester becomes highly reactive and (ii) a major conformational change exposes a conserved COOH-terminal receptor binding domain [] (RBD). RBD exposure allows the aM protease complex to bind to clearance receptors and be removed from circulation []. Tetrameric, dimeric, and, more recently, monomeric aM protease inhibitors have been identified [, ].; GO: 0005615 extracellular space; PDB: 1QSJ_D 1QQF_A 4ACQ_C 2B39_B 2WIN_H 2I07_B 2ICF_B 2XWJ_D 3G6J_B 2NOJ_C ....
Probab=46.32 E-value=1.4e+02 Score=24.61 Aligned_cols=22 Identities=14% Similarity=-0.019 Sum_probs=13.2
Q ss_pred HHHHhcccHhHHHHHHHHHhHC
Q 046547 285 EGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
-++.+.++.+.+..+.+.+.+.
T Consensus 200 La~l~~~~~~~~~~iv~WL~~q 221 (246)
T PF07678_consen 200 LALLKRGDLEEASPIVRWLISQ 221 (246)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHC
T ss_pred HHHHhcccHHHHHHHHHHHHHh
Confidence 3444457777777766666553
No 412
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=45.86 E-value=1.2e+02 Score=25.09 Aligned_cols=58 Identities=14% Similarity=0.102 Sum_probs=41.3
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhH----CCCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 282 VVVEGCLECREYILAGKTVMGMTE----RGFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~----~g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
-+-..|.+.|++++|.++|+.+.. .|.. +...+...+..++.+.|+.+....+.=++.
T Consensus 183 ~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 183 EMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 455668888899999988887742 2322 355667778888888898888877665543
No 413
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=45.86 E-value=73 Score=19.84 Aligned_cols=49 Identities=10% Similarity=0.003 Sum_probs=26.3
Q ss_pred HHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH-----hccCChhHHHHHH
Q 046547 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL-----AGVGEWKLATVVR 335 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-----~~~g~~~~a~~~~ 335 (343)
+...|++-+|.++++++=...-.|....+..||... .+.|+.+.|..++
T Consensus 9 l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 9 LFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 345677777777777664432223445555555532 3456666666553
No 414
>PHA03100 ankyrin repeat protein; Provisional
Probab=45.75 E-value=2.4e+02 Score=25.84 Aligned_cols=214 Identities=12% Similarity=0.059 Sum_probs=100.8
Q ss_pred HHHHHHhCccCcchHHHHHHHchhcCCCCChH-----HHhhh-----hhhcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 36 ETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-----SFLSN-----FPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
..+...++.|+.+-+..++ +.|..|+.. +.+.. ....+..+.++-+++..... ..+|....+.+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll----~~g~~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i--~~~d~~g~tpL 110 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILL----DNGADINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANV--NAPDNNGITPL 110 (480)
T ss_pred hhhhhhhccCCHHHHHHHH----HcCCCCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCC--CCCCCCCCchh
Confidence 4455566667665544444 445544432 22344 45566667777676664432 22343444445
Q ss_pred HHHHhh-cCCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH--HHHHH
Q 046547 106 LSYTLQ-SLHPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC--NYLVS 179 (343)
Q Consensus 106 i~~~~~-~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~--~~ll~ 179 (343)
.. +.. ..|+.+- ++.+.+.|..++. ...+.+. ..+..+. .-.++.+.+.+.|..++...- ...+.
T Consensus 111 ~~-A~~~~~~~~~i----v~~Ll~~g~~~~~~~~~g~t~L~-~A~~~~~---~~~~iv~~Ll~~g~din~~d~~g~tpL~ 181 (480)
T PHA03100 111 LY-AISKKSNSYSI----VEYLLDNGANVNIKNSDGENLLH-LYLESNK---IDLKILKLLIDKGVDINAKNRYGYTPLH 181 (480)
T ss_pred hH-HHhcccChHHH----HHHHHHcCCCCCccCCCCCcHHH-HHHHcCC---ChHHHHHHHHHCCCCcccccCCCCCHHH
Confidence 42 221 4455443 4444456655533 2334443 3344431 123456666777776653321 23445
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhh--------HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLES--------YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKV 248 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--------~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~l 248 (343)
..+..|+.+-+ +.+.+.|..|+... +.+.+...+..|+ ...++.+.+.+ .|..++ ..-.+.|
T Consensus 182 ~A~~~~~~~iv----~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~-~g~din~~d~~g~TpL 254 (480)
T PHA03100 182 IAVEKGNIDVI----KFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLS-YGVPINIKDVYGFTPL 254 (480)
T ss_pred HHHHhCCHHHH----HHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHH-cCCCCCCCCCCCCCHH
Confidence 55566665544 34444555444221 1333444444454 11233344444 355443 2334444
Q ss_pred HHHHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 249 AAALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
..| +..|+.+ +++.+.+.|..|+
T Consensus 255 ~~A-~~~~~~~----iv~~Ll~~gad~n 277 (480)
T PHA03100 255 HYA-VYNNNPE----FVKYLLDLGANPN 277 (480)
T ss_pred HHH-HHcCCHH----HHHHHHHcCCCCC
Confidence 444 4555544 4444555565444
No 415
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=45.57 E-value=1.5e+02 Score=23.54 Aligned_cols=57 Identities=11% Similarity=-0.007 Sum_probs=42.7
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHCCC--------------CCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTERGF--------------IPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
-+++..|-+.-++.+..++++.|.+..+ .+--...|.....+.+.|..|.|..++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 3567778888888888888888765322 23445667788889999999999998874
No 416
>PRK09687 putative lyase; Provisional
Probab=44.90 E-value=1.9e+02 Score=24.49 Aligned_cols=136 Identities=13% Similarity=0.120 Sum_probs=68.8
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR-KTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
+..+-...+.++++.++. .+...+-.+.+. +|..+-...+.+++..+ +.+.+...+..+..+ ++..+-...
T Consensus 141 ~~~VR~~a~~aLg~~~~~-~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~D----~~~~VR~~A 212 (280)
T PRK09687 141 STNVRFAVAFALSVINDE-AAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQD----KNEEIRIEA 212 (280)
T ss_pred CHHHHHHHHHHHhccCCH-HHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhcC----CChHHHHHH
Confidence 444445555666666653 344444444442 33344444555555542 233455555555532 455566666
Q ss_pred HHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 322 (343)
+.++.+.++. .|...+-...+.+. .....+.++...|.. +|...+..+.+.. ||..+-...+.++
T Consensus 213 ~~aLg~~~~~-~av~~Li~~L~~~~-----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~ 277 (280)
T PRK09687 213 IIGLALRKDK-RVLSVLIKELKKGT-----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL 277 (280)
T ss_pred HHHHHccCCh-hHHHHHHHHHcCCc-----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence 6666666663 34444444443321 123455666666663 4666666665432 3555555555444
No 417
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=44.38 E-value=2.4e+02 Score=25.47 Aligned_cols=165 Identities=10% Similarity=-0.045 Sum_probs=104.5
Q ss_pred CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHH-hccCchhHHHHHHHHHHhcCCccCHhh--
Q 046547 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWL-ERRCQSQSVADILLEMKSIGYHPDCGT-- 173 (343)
Q Consensus 97 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~-~~~~~~~~a~~~~~~m~~~g~~~~~~~-- 173 (343)
|.-..|..+=..++...|+.++|.+.--..++.. ++ ..+...+++.| .-..+.+.+..-|++-... .|+...
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 4445666665567778889999988877766533 21 22344444322 1223467777777776553 333221
Q ss_pred -----------HHHHHHHHHccCcHHHHHHHHHHhhhC---CCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC
Q 046547 174 -----------CNYLVSSLCAIDQLVEAAKVLKGMSSA---ECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239 (343)
Q Consensus 174 -----------~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 239 (343)
+..=-+-..+.|.+.+|.+.|.+.+.. +..|+...|-....+..+.|+..+|+.-.+....
T Consensus 241 ~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~----- 315 (486)
T KOG0550|consen 241 SASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK----- 315 (486)
T ss_pred hHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh-----
Confidence 112223456789999999999998764 3566777788888888999999999998887763
Q ss_pred Cchh-HHHHHH--HHHHhCccHHHHHHHHHHHHHc
Q 046547 240 PRQG-MVIKVA--AALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 240 p~~~-~~~~li--~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.|.. ....+. .++...++|++|.+-++...+.
T Consensus 316 iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 316 IDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2332 222222 2344456888888888876654
No 418
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=44.21 E-value=41 Score=24.09 Aligned_cols=47 Identities=15% Similarity=0.091 Sum_probs=29.4
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.++..+...+..-.|.++++.+.+.|...+..|.-.-++.+...|-.
T Consensus 12 ~Il~~l~~~~~~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gli 58 (120)
T PF01475_consen 12 AILELLKESPEHLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAGLI 58 (120)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHcCCCCCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCCeE
Confidence 45555666666677777888887777666666555555666666643
No 419
>PF13934 ELYS: Nuclear pore complex assembly
Probab=44.06 E-value=1.8e+02 Score=23.80 Aligned_cols=107 Identities=14% Similarity=0.106 Sum_probs=64.9
Q ss_pred hHHHHHHHHHc--cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 173 TCNYLVSSLCA--IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 173 ~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
.|...+.++.. .++++.|.+.+-+- .+.|+-. .-++.++...|+.+-|+.+++.+.- ...+...-..++.
T Consensus 78 ~~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p---~l~s~~~~~~~~~ 149 (226)
T PF13934_consen 78 KYIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGP---PLSSPEALTLYFV 149 (226)
T ss_pred HHHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCC---CCCCHHHHHHHHH
Confidence 46667777654 56777777776322 2223322 3578888888999999999888652 1222233334444
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
. ..++.+.+|..+-+...+.. ....+..++..+....
T Consensus 150 ~-La~~~v~EAf~~~R~~~~~~---~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 150 A-LANGLVTEAFSFQRSYPDEL---RRRLFEQLLEHCLEEC 186 (226)
T ss_pred H-HHcCCHHHHHHHHHhCchhh---hHHHHHHHHHHHHHHh
Confidence 4 56688988888777655421 1346666776666444
No 420
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=43.99 E-value=2.7e+02 Score=25.88 Aligned_cols=45 Identities=9% Similarity=0.084 Sum_probs=28.3
Q ss_pred HHHHHHHHHh-hhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 188 VEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 188 ~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
++..+.++.. ...|+..+......+. -...|+.-.|+.++++...
T Consensus 183 ~~i~~~L~~i~~~Egi~~e~eAL~~Ia--~~S~Gd~RdAL~lLeq~i~ 228 (484)
T PRK14956 183 SVLQDYSEKLCKIENVQYDQEGLFWIA--KKGDGSVRDMLSFMEQAIV 228 (484)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHH--HHcCChHHHHHHHHHHHHH
Confidence 3444555544 3466766666665554 3446888889999888653
No 421
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=43.88 E-value=3.5e+02 Score=27.13 Aligned_cols=188 Identities=10% Similarity=-0.011 Sum_probs=104.2
Q ss_pred CchhHHHHHHHHHHhcCCccCH-------hhHHHHHH-HHHccCcHHHHHHHHHHhhhC----CCCCCHhhHHHHHHHHh
Q 046547 150 CQSQSVADILLEMKSIGYHPDC-------GTCNYLVS-SLCAIDQLVEAAKVLKGMSSA----ECVPDLESYSIVIGAMS 217 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~-------~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~----~~~~~~~~~~~ll~~~~ 217 (343)
.++++|..++.+....-..|+. ..++.+-. .....|++++|.++-+..... -..+....++.+..+..
T Consensus 429 ~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~ 508 (894)
T COG2909 429 HRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAH 508 (894)
T ss_pred cChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHH
Confidence 3588999888887654323322 23443322 233468899998887766542 23445667788888888
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhH---HHHHH--HHHHhCccHH--HHHHHHHHHHHc--CCC----CchhhHHHHH
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGM---VIKVA--AALRANREMW--KAVEMIEFLERK--GCP----IGFQGYEVVV 284 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~~li--~~~~~~~~~~--~a~~~~~~m~~~--g~~----p~~~~~~~li 284 (343)
-.|++++|..+..+..+. --.-+... |..+. ..+...|+.. +....|...... +-+ +-..++..+.
T Consensus 509 ~~G~~~~Al~~~~~a~~~-a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll 587 (894)
T COG2909 509 IRGELTQALALMQQAEQM-ARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLL 587 (894)
T ss_pred HhchHHHHHHHHHHHHHH-HHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHH
Confidence 899999999887776642 22223322 22222 2244556332 223333333221 111 1223445555
Q ss_pred HHHHhcccHhHHHH----HHHHHhHCCCCCCHHHH--HHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 285 EGCLECREYILAGK----TVMGMTERGFIPYIKVR--QKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 285 ~~~~~~g~~~~a~~----~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.++.+ .+.+.. -+..-......|-...+ ..|...+...|+.++|...++++..+
T Consensus 588 ~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l 647 (894)
T COG2909 588 RAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERL 647 (894)
T ss_pred HHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 55554 333322 22222222223322222 37788889999999999999998765
No 422
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=43.68 E-value=65 Score=20.82 Aligned_cols=37 Identities=27% Similarity=0.176 Sum_probs=24.8
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcc
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 149 (343)
.++.+.+.+++++..+.|..|.......+..+...-|
T Consensus 14 ~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 14 AGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp TT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 3777888888888887777777666666665554443
No 423
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=43.64 E-value=1e+02 Score=20.81 Aligned_cols=42 Identities=17% Similarity=0.241 Sum_probs=20.9
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
++|+-....|+..|...|.++++.+--+=-.+...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 445544455555555555555544444444444445555544
No 424
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=42.92 E-value=1.9e+02 Score=25.28 Aligned_cols=58 Identities=17% Similarity=0.128 Sum_probs=30.7
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcC-CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 248 VAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
|.-+.-+.|+..+|.+.|+++.+.- +..-......||.++....-+.+...++-+.-+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333445677777777777755421 110111233566666666666666665554433
No 425
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=42.79 E-value=79 Score=26.18 Aligned_cols=57 Identities=12% Similarity=-0.003 Sum_probs=30.4
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHH----cC-CCCchhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 246 IKVAAALRANREMWKAVEMIEFLER----KG-CPIGFQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
-.+...|.+.|++++|.++|+.+.. .| ..+...+...+..++.+.|+.++...+-=+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 3455556666666666666665531 11 233344445555556666666655554433
No 426
>PF06252 DUF1018: Protein of unknown function (DUF1018); InterPro: IPR009363 This family consists of several bacterial and phage proteins, related to Gp16 of phage Mu, of unknown function.
Probab=42.18 E-value=1.3e+02 Score=21.65 Aligned_cols=35 Identities=17% Similarity=0.024 Sum_probs=18.5
Q ss_pred ChhhHHHHHHHHhhc----CCChHHHHHHHHHHHhcCCC
Q 046547 98 PKIAYDYLLSYTLQS----LHPLPLALAILQRTLRSGCV 132 (343)
Q Consensus 98 ~~~~~~~li~~~~~~----~~~~~~a~~~~~~m~~~~~~ 132 (343)
|..+|..++.....+ .=...+...+++.|...|.+
T Consensus 2 ddd~YR~~L~~~~Gk~S~k~lt~~el~~vl~~l~~~G~k 40 (119)
T PF06252_consen 2 DDDTYRALLQRVTGKSSSKDLTEAELEKVLDELKRLGFK 40 (119)
T ss_pred CHHHHHHHHHHHhChhhHHHCCHHHHHHHHHHHHHccCc
Confidence 345566666422221 11355666777777776664
No 427
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=41.61 E-value=2.4e+02 Score=24.63 Aligned_cols=59 Identities=10% Similarity=0.152 Sum_probs=31.3
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
|.-+.-+.|+..+|.+.|+++.++..+..-...-..||.++....-+.++..++-+..+
T Consensus 281 LAMCARklGrlrEA~K~~RDL~ke~pl~t~lniheNLiEalLE~QAYADvqavLakYDd 339 (556)
T KOG3807|consen 281 LAMCARKLGRLREAVKIMRDLMKEFPLLTMLNIHENLLEALLELQAYADVQAVLAKYDD 339 (556)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 33334456777777777777664211111112234566666666656666555555444
No 428
>COG5210 GTPase-activating protein [General function prediction only]
Probab=41.37 E-value=3e+02 Score=25.67 Aligned_cols=61 Identities=7% Similarity=0.049 Sum_probs=44.5
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 190 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
.-+++..|+..|+.+...++..++..+.+.-..+.|.++++.+-.. |..--...+.+++..
T Consensus 361 ~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~e-g~~~l~~~~~~~l~~ 421 (496)
T COG5210 361 DPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLE-GSSMLFQLALAILKL 421 (496)
T ss_pred HHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-ccHHHHHHHHHHHHh
Confidence 3457778888888888888888888888888888888888888763 665555554444443
No 429
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.87 E-value=1.4e+02 Score=21.71 Aligned_cols=43 Identities=16% Similarity=0.049 Sum_probs=25.7
Q ss_pred HHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 295 LAGKTVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 295 ~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
.+.++|+.|..+|+-- -..-|......+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 6666666666665543 244455566666666777777666654
No 430
>TIGR03184 DNA_S_dndE DNA sulfur modification protein DndE. This model describes the DndE protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndE is a putative carboxylase homologous to NCAIR synthetases.
Probab=40.38 E-value=81 Score=22.18 Aligned_cols=26 Identities=15% Similarity=0.184 Sum_probs=15.7
Q ss_pred hHHHHHHHHHHhcCCCCC-chhHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMP-RQGMVIKV 248 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p-~~~~~~~l 248 (343)
++|.+.+.++..+.|+.| ++..--++
T Consensus 5 ~~a~~~L~~Lk~~Tgi~~~NilcR~A~ 31 (105)
T TIGR03184 5 QTAKDQLRRLKRRTGLTPWNILCRWAF 31 (105)
T ss_pred HHHHHHHHHHhcccCCCcchHHHHHHH
Confidence 456677777776667777 44433333
No 431
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=39.67 E-value=4e+02 Score=26.61 Aligned_cols=86 Identities=7% Similarity=0.083 Sum_probs=49.3
Q ss_pred HHHHHHHHHHhh-hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC--C----------CCchhHHHHHHHHHH
Q 046547 187 LVEAAKVLKGMS-SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG--L----------MPRQGMVIKVAAALR 253 (343)
Q Consensus 187 ~~~a~~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~----------~p~~~~~~~li~~~~ 253 (343)
.++..+.++... ..|+..+......+.. ...|+..+|+.++++.....+ + .+|...+..++.+ +
T Consensus 180 ~eeIv~~L~~Il~~EgI~id~eAL~lIA~--~A~GsmRdALsLLdQAia~~~~~It~~~V~~~LG~~d~~~i~~ll~a-L 256 (830)
T PRK07003 180 AGHIVSHLERILGEERIAFEPQALRLLAR--AAQGSMRDALSLTDQAIAYSANEVTETAVSGMLGALDQTYMVRLLDA-L 256 (830)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHHhccCCcCHHHHHHHhCCCCHHHHHHHHHH-H
Confidence 455566666644 4566666665554443 447889999999887664211 1 1222233344443 3
Q ss_pred hCccHHHHHHHHHHHHHcCCCC
Q 046547 254 ANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p 275 (343)
..++..+++.+++++...|+.+
T Consensus 257 ~~~d~~~~l~~~~~l~~~g~~~ 278 (830)
T PRK07003 257 AAGDGPEILAVADEMALRSLSF 278 (830)
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 3466777777777777666543
No 432
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=39.54 E-value=2.1e+02 Score=25.98 Aligned_cols=52 Identities=10% Similarity=0.150 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC
Q 046547 260 KAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 311 (343)
+..++--.+..-.+.|.-. +...-|..+.+.+++..|..+-+++.+.+-.|.
T Consensus 281 R~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~ 334 (422)
T PF06957_consen 281 RNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE 334 (422)
T ss_dssp HHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence 3344444444444554322 344455667788888888888888887664443
No 433
>PHA02989 ankyrin repeat protein; Provisional
Probab=39.20 E-value=3.2e+02 Score=25.35 Aligned_cols=12 Identities=17% Similarity=0.138 Sum_probs=5.0
Q ss_pred HHHHHHhcCCcc
Q 046547 158 ILLEMKSIGYHP 169 (343)
Q Consensus 158 ~~~~m~~~g~~~ 169 (343)
+.+.+.+.|..+
T Consensus 90 iv~~Ll~~Gadi 101 (494)
T PHA02989 90 IVKLLLKFGADI 101 (494)
T ss_pred HHHHHHHCCCCC
Confidence 344444444433
No 434
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=38.49 E-value=54 Score=17.36 Aligned_cols=21 Identities=10% Similarity=0.025 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHcCCCCchhhH
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
++.|..+|+.... +.|+..+|
T Consensus 3 ~dRAR~IyeR~v~--~hp~~k~W 23 (32)
T PF02184_consen 3 FDRARSIYERFVL--VHPEVKNW 23 (32)
T ss_pred HHHHHHHHHHHHH--hCCCchHH
Confidence 4455555555544 23444443
No 435
>TIGR03581 EF_0839 conserved hypothetical protein EF_0839/AHA_3917. Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.
Probab=38.39 E-value=1.1e+02 Score=24.78 Aligned_cols=44 Identities=9% Similarity=-0.017 Sum_probs=24.7
Q ss_pred HHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 296 AGKTVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 296 a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
-.++++-..+.|++- =++.|+++|+.-...-+.++..+++..++
T Consensus 191 f~~I~~i~ldaGv~kviPHIYssiIDk~tG~TrpedV~~l~~~~k 235 (236)
T TIGR03581 191 FEEIVQIALDAGVEKVIPHVYSSIIDKETGNTRVEDVKQLLAIVK 235 (236)
T ss_pred HHHHHHHHHHcCCCeeccccceeccccccCCCCHHHHHHHHHHhh
Confidence 334444444555431 23566666666666666677777666654
No 436
>PLN00047 photosystem II biogenesis protein Psb29; Provisional
Probab=37.98 E-value=2.5e+02 Score=23.78 Aligned_cols=30 Identities=7% Similarity=0.090 Sum_probs=19.0
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhccC
Q 046547 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150 (343)
Q Consensus 119 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 150 (343)
...+|+++.+ |.+|+..- ..+..++|+..+
T Consensus 107 lVtvfd~fm~-GY~Pee~~-~~IF~Alc~a~g 136 (283)
T PLN00047 107 FVTVYDQLME-GYPSDEDR-DAIFKAYIKALG 136 (283)
T ss_pred hHHHHHHHHc-cCCChHHH-HHHHHHHHHHcC
Confidence 4566777654 67776654 566667776554
No 437
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=37.74 E-value=1.3e+02 Score=20.38 Aligned_cols=22 Identities=23% Similarity=0.077 Sum_probs=13.6
Q ss_pred HHHHHhCccHHHHHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.......|++++|.+.+++.++
T Consensus 48 A~~~~~~G~~~~A~~~l~eAi~ 69 (94)
T PF12862_consen 48 AELHRRFGHYEEALQALEEAIR 69 (94)
T ss_pred HHHHHHhCCHHHHHHHHHHHHH
Confidence 3344556777777777776553
No 438
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=37.57 E-value=1.1e+02 Score=29.01 Aligned_cols=62 Identities=10% Similarity=-0.014 Sum_probs=27.1
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
+...-.-++..|.+.|-.+.|.++.+.+-.+ -. ...-|..-+..+.++|+...+..+.+.+.
T Consensus 404 t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~-~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 404 TNDDAEKLLEICAELGLEDVAREICKILGQR-LL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHH-HH--HHHHHHHHHHHHH----------------
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-HH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444556667777777777777777766543 11 23345666666677777766665555544
No 439
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=37.50 E-value=74 Score=22.47 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=14.0
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
.|.++++.+.+.+...+..|--..|..+.+.|
T Consensus 18 sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~G 49 (116)
T cd07153 18 TAEEIYERLRKKGPSISLATVYRTLELLEEAG 49 (116)
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCC
Confidence 34455555544444444443333334444444
No 440
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=37.33 E-value=2.7e+02 Score=24.01 Aligned_cols=23 Identities=22% Similarity=0.264 Sum_probs=14.5
Q ss_pred hcccHhHHHHHHHHHh-HCCCCCC
Q 046547 289 ECREYILAGKTVMGMT-ERGFIPY 311 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~-~~g~~p~ 311 (343)
..|+..+|..++.++. +.|..|.
T Consensus 263 ~~~~~~~a~~~l~~l~~~~g~~~~ 286 (337)
T PRK12402 263 EAGDFTDARKTLDDLLIDEGLSGG 286 (337)
T ss_pred HcCCHHHHHHHHHHHHHHcCCCHH
Confidence 4456777777777765 5666554
No 441
>PF09868 DUF2095: Uncharacterized protein conserved in archaea (DUF2095); InterPro: IPR018662 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=37.32 E-value=1.4e+02 Score=21.28 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=20.9
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLS 142 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li 142 (343)
++.++...++|+.+++-|.++| ..+...-+.|-
T Consensus 70 ~lrRC~T~EEALEVInylek~G-EIt~e~A~eLr 102 (128)
T PF09868_consen 70 YLRRCKTDEEALEVINYLEKRG-EITPEEAKELR 102 (128)
T ss_pred HHHHhCcHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4445566788888888888877 33444434443
No 442
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=37.31 E-value=3.6e+02 Score=25.35 Aligned_cols=87 Identities=18% Similarity=0.269 Sum_probs=49.9
Q ss_pred HHHHHHHHHHh-hhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC-----C----------CCchhHHHHHHH
Q 046547 187 LVEAAKVLKGM-SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG-----L----------MPRQGMVIKVAA 250 (343)
Q Consensus 187 ~~~a~~~~~~m-~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~----------~p~~~~~~~li~ 250 (343)
.++..+.+... .+.|+..+......++.. ..|++..|...++++..-.+ + .++....-.|++
T Consensus 189 ~~el~~~L~~i~~~egi~ie~eAL~~Ia~~--s~GslR~al~~Ldkai~~~~~~~~~It~~~V~~llg~~~~~~if~L~~ 266 (507)
T PRK06645 189 FEEIFKLLEYITKQENLKTDIEALRIIAYK--SEGSARDAVSILDQAASMSAKSDNIISPQVINQMLGLVDSSVIIEFVE 266 (507)
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--cCCCHHHHHHHHHHHHHhhccCCCCcCHHHHHHHHCCCCHHHHHHHHH
Confidence 34444454443 456766666666655543 45888888888888743111 1 112222333444
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
+. ..|+.++|+.+++++...|..|.
T Consensus 267 ai-~~~d~~~Al~~l~~L~~~g~~~~ 291 (507)
T PRK06645 267 YI-IHRETEKAINLINKLYGSSVNLE 291 (507)
T ss_pred HH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 43 34777788888888877776653
No 443
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=37.28 E-value=2.2e+02 Score=23.00 Aligned_cols=96 Identities=16% Similarity=0.016 Sum_probs=43.6
Q ss_pred HHhcCCChhHHHHHHHHHHhc---CCCCCchhHHHHHHH--HHHhCcc-------HHHHHHHHHHHHHcCCCC----chh
Q 046547 215 AMSTARKTNDAVEMMKEMVLN---MGLMPRQGMVIKVAA--ALRANRE-------MWKAVEMIEFLERKGCPI----GFQ 278 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~---~~~~p~~~~~~~li~--~~~~~~~-------~~~a~~~~~~m~~~g~~p----~~~ 278 (343)
-+.....+++|++.|.-..-- .+.+|....+..|=- .|-..|+ ...|.+.|.+..+..-.| +..
T Consensus 86 ~~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~ 165 (214)
T PF09986_consen 86 DFSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEA 165 (214)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHH
Confidence 455556667777666654321 133333333322222 2223333 234455555544332221 122
Q ss_pred hHHHHH-HHHHhcccHhHHHHHHHHHhHCCCCC
Q 046547 279 GYEVVV-EGCLECREYILAGKTVMGMTERGFIP 310 (343)
Q Consensus 279 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~g~~p 310 (343)
+.--|+ ....+.|+.++|.+.|.++...+-.+
T Consensus 166 ~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 166 TLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 222222 23556677777777777766655443
No 444
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=36.89 E-value=4.6e+02 Score=26.53 Aligned_cols=26 Identities=19% Similarity=0.204 Sum_probs=13.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHh
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLR 128 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~ 128 (343)
|..|+. .|...|+.++|+++|.+..+
T Consensus 507 y~~Li~-LY~~kg~h~~AL~ll~~l~d 532 (877)
T KOG2063|consen 507 YRELIE-LYATKGMHEKALQLLRDLVD 532 (877)
T ss_pred HHHHHH-HHHhccchHHHHHHHHHHhc
Confidence 444553 44444555555555555543
No 445
>PF04348 LppC: LppC putative lipoprotein; InterPro: IPR007443 This entry includes several bacterial outer membrane antigens, whose molecular function is unknown.; PDB: 3CKM_A.
Probab=36.73 E-value=12 Score=35.19 Aligned_cols=90 Identities=12% Similarity=0.062 Sum_probs=0.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH--hCccHHHHHHHHHHHHHcCCCCchh--hHHHHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR--ANREMWKAVEMIEFLERKGCPIGFQ--GYEVVVEGC 287 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~ 287 (343)
.+.++...|+++.|..++.++.. ..+.|.....-.++.+-. ..|+++.|.+.+.......+.+... .+......|
T Consensus 30 Aa~a~l~~g~~~~A~~ll~~l~~-~~L~~~q~~~~~Ll~A~lal~~~~~~~Al~~L~~~~~~~l~~~~~~~~~~l~A~a~ 108 (536)
T PF04348_consen 30 AARALLQEGDWAQAQALLNQLDP-QQLSPSQQARYQLLRARLALAQGDPEQALSLLNAQDLWQLPPEQQARYHQLRAQAY 108 (536)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHhCCCHHHHHHHHHhccc-ccCChHHHHHHHHHHHHHHHhcCCHHHHHHHhccCCcccCCHHHHHHHHHHHHHHH
Confidence 35667778888888888888875 366666666666666533 4677888888777543333333322 233344456
Q ss_pred HhcccHhHHHHHHHH
Q 046547 288 LECREYILAGKTVMG 302 (343)
Q Consensus 288 ~~~g~~~~a~~~~~~ 302 (343)
...|++-+|.+.+-.
T Consensus 109 ~~~~~~l~Aa~~~i~ 123 (536)
T PF04348_consen 109 EQQGDPLAAARERIA 123 (536)
T ss_dssp ---------------
T ss_pred HhcCCHHHHHHHHHH
Confidence 666666666554443
No 446
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.43 E-value=5.5e+02 Score=29.19 Aligned_cols=149 Identities=10% Similarity=0.001 Sum_probs=0.0
Q ss_pred HHHHHHHccCcHHHHHHHHHH----hhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 176 YLVSSLCAIDQLVEAAKVLKG----MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~----m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
.+-.+-.+++.+..|...++. .++. .....-|..+...|+..+++|...-+...-... ......|..
T Consensus 1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~--~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~-------~sl~~qil~ 1458 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEK--ETEEALYFLLQNLYGSIHDPDGVEGVSARRFAD-------PSLYQQILE 1458 (2382)
T ss_pred HHHHHHHhhHHHHHHHHHHHHhccccchh--HHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcC-------ccHHHHHHH
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 330 (343)
....|++..|...|+.+.+ ..|+ ..+++-++..-...|.++.+.-..+-.....-.-...-++.=+.+-.+.++||.
T Consensus 1459 ~e~~g~~~da~~Cye~~~q--~~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~ 1536 (2382)
T KOG0890|consen 1459 HEASGNWADAAACYERLIQ--KDPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDL 1536 (2382)
T ss_pred HHhhccHHHHHHHHHHhhc--CCCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhh
Q ss_pred HHHHH
Q 046547 331 ATVVR 335 (343)
Q Consensus 331 a~~~~ 335 (343)
..+..
T Consensus 1537 ~e~~l 1541 (2382)
T KOG0890|consen 1537 LESYL 1541 (2382)
T ss_pred hhhhh
No 447
>COG3107 LppC Putative lipoprotein [General function prediction only]
Probab=36.29 E-value=3.1e+02 Score=25.76 Aligned_cols=84 Identities=17% Similarity=0.092 Sum_probs=56.4
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH--HhCccHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHH
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL--RANREMWKAVEMIEFLERKGCPIG--FQGYEVVVEGCL 288 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~ 288 (343)
++++.+.|+.+.|..++.++.. .+.|.-...-.++.+- ....+...|.+.+.+.......++ ...|..-+.+..
T Consensus 70 a~al~~e~k~~qA~~Ll~ql~~--~Ltd~Q~~~~~LL~ael~la~~q~~~Al~~L~~~~~~~ls~~Qq~Ry~q~~a~a~e 147 (604)
T COG3107 70 ARALVEEGKTAQAQALLNQLPQ--ELTDAQRAEKSLLAAELALAQKQPAAALQQLAKLLPADLSQNQQARYYQARADALE 147 (604)
T ss_pred HHHHHHcCChHHHHHHHHhccc--cCCHHHHHHHHHHHHHHHHhccChHHHHHHHhhcchhhcCHHHHHHHHHHHHHHHh
Confidence 5677788888888888888763 6777777777776653 345677888888887766556555 345566666666
Q ss_pred hcccHhHHHH
Q 046547 289 ECREYILAGK 298 (343)
Q Consensus 289 ~~g~~~~a~~ 298 (343)
..|+.-++.+
T Consensus 148 a~~~~~~a~r 157 (604)
T COG3107 148 ARGDSIDAAR 157 (604)
T ss_pred cccchHHHHH
Confidence 6655444444
No 448
>PRK09857 putative transposase; Provisional
Probab=35.91 E-value=2.8e+02 Score=23.74 Aligned_cols=66 Identities=12% Similarity=0.013 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 311 (343)
+..++....+.++.++..++++.+.+. ..+.....-++.+-+.+.|.-+++.++..+|...|+.++
T Consensus 209 ~~~ll~Yi~~~~~~~~~~~~~~~l~~~-~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 209 IKGLFNYILQTGDAVRFNDFIDGVAER-SPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHHHhhccccchHHHHHHHHHHh-CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 456666666777777777777777654 332333334556667777887888999999999998765
No 449
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=35.78 E-value=38 Score=21.21 Aligned_cols=16 Identities=19% Similarity=0.152 Sum_probs=9.0
Q ss_pred cHHHHHHHHHHhhhCC
Q 046547 186 QLVEAAKVLKGMSSAE 201 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~ 201 (343)
+++.|...|.+++..|
T Consensus 40 d~~~Al~~F~~lk~~~ 55 (63)
T smart00804 40 DYERALKNFTELKSEG 55 (63)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 5556666666655543
No 450
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=35.75 E-value=3.8e+02 Score=25.16 Aligned_cols=29 Identities=10% Similarity=0.004 Sum_probs=20.2
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCCCCC
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 311 (343)
.+++++ ..++.++|..++.++...|..|.
T Consensus 247 ~Li~al-~~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 247 GIAAAL-AQGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred HHHHHH-HcCCHHHHHHHHHHHHHcCCCHH
Confidence 344444 45778888888888888886553
No 451
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=35.04 E-value=2.6e+02 Score=23.19 Aligned_cols=139 Identities=17% Similarity=0.220 Sum_probs=83.2
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
.+...|..|.+.-+|.-|=...++..+ |=.. .-+..+.+......+.++++.... .+..-+.....+++ +.
T Consensus 132 AlRRtMEiyS~ttRFalaCN~s~KIiE----PIQSRCAiLRysklsd~qiL~Rl~~v~k~-Ekv~yt~dgLeaii---ft 203 (333)
T KOG0991|consen 132 ALRRTMEIYSNTTRFALACNQSEKIIE----PIQSRCAILRYSKLSDQQILKRLLEVAKA-EKVNYTDDGLEAII---FT 203 (333)
T ss_pred HHHHHHHHHcccchhhhhhcchhhhhh----hHHhhhHhhhhcccCHHHHHHHHHHHHHH-hCCCCCcchHHHhh---hh
Confidence 467778888888887777666665543 2221 113344444444444455444321 22222334445555 33
Q ss_pred cCCChHHHHHHHHHHHh-cC-----------CCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 112 SLHPLPLALAILQRTLR-SG-----------CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~-~~-----------~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
..||...|+.-++.-.. .| -.|.+.....++..+.+ + ++++|.+++.++-+.|+.|. ...+.+.+
T Consensus 204 a~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~~-~-~~~~A~~il~~lw~lgysp~-Dii~~~FR 280 (333)
T KOG0991|consen 204 AQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACLK-R-NIDEALKILAELWKLGYSPE-DIITTLFR 280 (333)
T ss_pred ccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHHh-c-cHHHHHHHHHHHHHcCCCHH-HHHHHHHH
Confidence 56888888888776542 12 14777777788876444 3 58999999999999998885 34455555
Q ss_pred HHH
Q 046547 180 SLC 182 (343)
Q Consensus 180 ~~~ 182 (343)
.+-
T Consensus 281 v~K 283 (333)
T KOG0991|consen 281 VVK 283 (333)
T ss_pred HHH
Confidence 543
No 452
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=34.61 E-value=81 Score=23.44 Aligned_cols=43 Identities=16% Similarity=0.111 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHH
Q 046547 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181 (343)
Q Consensus 137 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 181 (343)
|...++.+ +..+-..+...++++|.++|+..+...|+.++.-.
T Consensus 112 tlGvL~~a--k~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~~~ 154 (157)
T COG2405 112 TLGVLALA--KSKGLISKDKPILDELIEKGFRISRSILEEILRKL 154 (157)
T ss_pred hhHHHHHH--HHcCcccchHHHHHHHHHhcCcccHHHHHHHHHHh
Confidence 44555443 33345677778888888888888887777766543
No 453
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=34.53 E-value=4.1e+02 Score=25.23 Aligned_cols=89 Identities=9% Similarity=0.063 Sum_probs=56.9
Q ss_pred hcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc-CCc-cCHhhHHHHHHHHHccCcHH
Q 046547 111 QSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI-GYH-PDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~-g~~-~~~~~~~~ll~~~~~~~~~~ 188 (343)
.+.|..+.+.++|++-++ |++.+...|...+..++...++.+...+.|+..... |.. .+...|...|.--...+++.
T Consensus 90 ~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k 168 (577)
T KOG1258|consen 90 YKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWK 168 (577)
T ss_pred HHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHH
Confidence 355677888888888765 455666666666665555555666666666666542 211 12345666676667777788
Q ss_pred HHHHHHHHhhhC
Q 046547 189 EAAKVLKGMSSA 200 (343)
Q Consensus 189 ~a~~~~~~m~~~ 200 (343)
....++++.++.
T Consensus 169 ~v~~iyeRilei 180 (577)
T KOG1258|consen 169 RVANIYERILEI 180 (577)
T ss_pred HHHHHHHHHHhh
Confidence 888888877763
No 454
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=34.45 E-value=36 Score=22.47 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=24.2
Q ss_pred cccHhHHHHHHHHHh---HCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 290 CREYILAGKTVMGMT---ERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~---~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.|+.+.|+..|+.-. ..|+..... ..+....|+.|.++-++|.+.
T Consensus 21 ~g~~e~Al~~Y~~gi~~l~eg~ai~~~-------~~~~~~~w~~ar~~~~Km~~~ 68 (79)
T cd02679 21 WGDKEQALAHYRKGLRELEEGIAVPVP-------SAGVGSQWERARRLQQKMKTN 68 (79)
T ss_pred cCCHHHHHHHHHHHHHHHHHHcCCCCC-------cccccHHHHHHHHHHHHHHHH
Confidence 456666666665432 234332211 334455677777777777654
No 455
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=34.20 E-value=2.4e+02 Score=22.53 Aligned_cols=61 Identities=8% Similarity=-0.049 Sum_probs=36.8
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
...+.++..+...|+++.|.+.|.-+.... ..|.. .|+.=+..+.+.+.-....++++.|.
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~~-~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l~ 103 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRCP-EVDIRSLWGIGAEILMRRGEQNSELEFLEWLI 103 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcCC-CCChHhcchHHHHHHHcCCCcchHHHHHHHHH
Confidence 445677777888888888888888877542 22333 34444455555555444445555543
No 456
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=33.90 E-value=2.5e+02 Score=22.65 Aligned_cols=95 Identities=17% Similarity=0.046 Sum_probs=64.1
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch-hHHHHHHHH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVPD-----LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAA 251 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~ 251 (343)
-+-+.++|++++|.+-|......- ++. ...|..-..++.+.+.++.|+.-.....+ +-|+. ...-.-..+
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAea 177 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAEA 177 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHHH
Confidence 366789999999999999988753 222 23355555677888889988887777664 22321 111122346
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
|-+..+++.|+.=|+.+.+. .|...
T Consensus 178 yek~ek~eealeDyKki~E~--dPs~~ 202 (271)
T KOG4234|consen 178 YEKMEKYEEALEDYKKILES--DPSRR 202 (271)
T ss_pred HHhhhhHHHHHHHHHHHHHh--CcchH
Confidence 77888999999999998873 45443
No 457
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=33.58 E-value=1.5e+02 Score=22.14 Aligned_cols=69 Identities=17% Similarity=0.149 Sum_probs=46.7
Q ss_pred CCchhHHHHHHHHHHhCc---cHHHHHHHHHHHHHcCCCCchhhH-HHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 239 MPRQGMVIKVAAALRANR---EMWKAVEMIEFLERKGCPIGFQGY-EVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 239 ~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~-~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.++..+--.+..++.+.. +..+...++++..+...+-...-| -.|.-++.+.++++++.++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 566666667777777765 455677888888763222222222 234557889999999999999887753
No 458
>cd08790 DED_DEDD Death Effector Domain of DEDD. Death Effector Domain (DED) found in DEDD. DEDD has been shown to block mitotic progression by inhibiting Cdk1 and to be involved in regulating the insulin signaling cascade. DEDD can bind to itself, to DEDD2, and to the two tandem DED-containing caspases, caspase-8 and -10. In general, DEDs comprise a subfamily of the Death Domain (DD) superfamily. DDs are protein-protein interaction domains found in a variety of domain architectures. Their common feature is that they form homodimers by self-association or heterodimers by associating with other members of the DD superfamily including PYRIN and CARD (Caspase activation and recruitment domain). They serve as adaptors in signaling pathways and can recruit other proteins into signaling complexes.
Probab=33.39 E-value=1.6e+02 Score=20.28 Aligned_cols=70 Identities=10% Similarity=0.047 Sum_probs=41.7
Q ss_pred hchhhhhhhhccccCCCCHHHHHHHHHH---HhCccCcchHHHHHHHchhcCCC-CChHH-HhhhhhhcccchHH
Q 046547 13 VNFRPCLLQFSSLRSMSSLRTLEETVRA---AVDAKDYQQIPELLGSFEEACQN-PNPFS-FLSNFPQNHRIKVI 82 (343)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~~li~~---~~~~~~~~~a~~~~~~m~~~~~~-p~~~~-~~~~~~~~~~~~~~ 82 (343)
.+.+.++.++...-+..+++...=+-.- -.+...++.+.++|..+.+.|.- .+... ...++..-++.+..
T Consensus 3 ~~lh~~l~~I~e~L~~~DveaLkFLc~D~i~~~~~e~i~s~~~Lf~~Lee~gll~e~~~~fL~ELLy~I~R~DLL 77 (97)
T cd08790 3 YSLHRMFDIVGTHLTHRDVRVLSFLFVDVIDDYERGLIRSGRDFLLALERQGRCDETNFRQVLQLLRIITRHDLL 77 (97)
T ss_pred hhHHHHHHHHHHhcCHHHHHHHHHHhHHHhhhhhccCcCcHHHHHHHHHHcCCCccchHHHHHHHHHHHHHHHHH
Confidence 3456666666666555554443333222 24557788999999999998863 33212 24555566665555
No 459
>PF14669 Asp_Glu_race_2: Putative aspartate racemase
Probab=32.94 E-value=2.6e+02 Score=22.39 Aligned_cols=57 Identities=12% Similarity=-0.038 Sum_probs=45.2
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHHcCC--------------CCchhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 246 IKVAAALRANREMWKAVEMIEFLERKGC--------------PIGFQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~~g~--------------~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
-+++..|-+..+|.++.++++.|.+..+ .+--...|.-...|.++|..|.|+.++++
T Consensus 136 iS~m~~Yhk~~qW~KGrkvLd~l~el~i~ft~LKGL~g~e~~asrCqivn~AaEiFL~sgsidGA~~vLre 206 (233)
T PF14669_consen 136 ISLMYSYHKTLQWSKGRKVLDKLHELQIHFTSLKGLTGPEKLASRCQIVNIAAEIFLKSGSIDGALWVLRE 206 (233)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCccCccccCchhhhHHHHHHHHHHcCCchHHHHHHhc
Confidence 4677788888999999999998876422 23344677788889999999999999984
No 460
>PLN03025 replication factor C subunit; Provisional
Probab=32.88 E-value=3.2e+02 Score=23.56 Aligned_cols=116 Identities=9% Similarity=0.002 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc------------CCCCchhhHHHHHHHHHhc
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK------------GCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------------g~~p~~~~~~~li~~~~~~ 290 (343)
++....+....++.|+..+......++.... |+...+...++..... .-.|.......++.....
T Consensus 161 ~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~--gDlR~aln~Lq~~~~~~~~i~~~~v~~~~~~~~~~~i~~~i~~~~~- 237 (319)
T PLN03025 161 QEILGRLMKVVEAEKVPYVPEGLEAIIFTAD--GDMRQALNNLQATHSGFGFVNQENVFKVCDQPHPLHVKNIVRNCLK- 237 (319)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC--CCHHHHHHHHHHHHhcCCCCCHHHHHHHcCCCCHHHHHHHHHHHHc-
Q ss_pred ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC-ChhHHHHHHHHHHhhc
Q 046547 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG-EWKLATVVRQRFAELK 342 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~ 342 (343)
+++++|...+.++...|..|....... ........ +-..-.++...+.+.+
T Consensus 238 ~~~~~a~~~l~~ll~~g~~~~~Il~~l-~~~~~~~~~~~~~~~~~~~~~~~~~ 289 (319)
T PLN03025 238 GKFDDACDGLKQLYDLGYSPTDIITTL-FRVVKNYDMPEFLKLEYLREIGFAH 289 (319)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHhcCCCHHHHHHHHHHHHHHH
No 461
>PF10475 DUF2450: Protein of unknown function N-terminal domain (DUF2450) ; InterPro: IPR019515 This entry represents Vacuolar protein sorting-associated protein 54, and is thought to be involved in retrograde transport from early and late endosomes to late Golgi found in eukaryotes, but its function is not known.
Probab=32.64 E-value=3.2e+02 Score=23.35 Aligned_cols=119 Identities=10% Similarity=-0.043 Sum_probs=0.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
++...-+.++..+..+.+..+. ....-..-++.+...|++..|++++.+..+.--.....+.-.=+..-...-
T Consensus 104 Il~~~rkr~~l~~ll~~L~~i~-------~v~~~~~~l~~ll~~~dy~~Al~li~~~~~~l~~l~~~~c~~~L~~~L~e~ 176 (291)
T PF10475_consen 104 ILRLQRKRQNLKKLLEKLEQIK-------TVQQTQSRLQELLEEGDYPGALDLIEECQQLLEELKGYSCVRHLSSQLQET 176 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcccchHHHHHhHHHHHH
Q ss_pred cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
...--..+=..+.+--..-|+..|..++.||.-.|+...+..-+..
T Consensus 177 ~~~i~~~ld~~l~~~~~~Fd~~~Y~~v~~AY~lLgk~~~~~dkl~~ 222 (291)
T PF10475_consen 177 LELIEEQLDSDLSKVCQDFDPDKYSKVQEAYQLLGKTQSAMDKLQM 222 (291)
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhhHHHHHHHHH
No 462
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=32.46 E-value=4.7e+02 Score=25.31 Aligned_cols=84 Identities=13% Similarity=0.203 Sum_probs=48.0
Q ss_pred HHHHHHHHH-hhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-C------------CchhHHHHHHHHHH
Q 046547 188 VEAAKVLKG-MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL-M------------PRQGMVIKVAAALR 253 (343)
Q Consensus 188 ~~a~~~~~~-m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~------------p~~~~~~~li~~~~ 253 (343)
++..+.+.. +.+.|+..+......++. ...|+...++.++++... .+- . ++......++.++.
T Consensus 186 eei~~~L~~i~~~egi~ie~~AL~~La~--~s~GslR~al~lLdq~ia-~~~~~It~~~V~~~Lg~~~~~~i~~LldaL~ 262 (618)
T PRK14951 186 ETVLEHLTQVLAAENVPAEPQALRLLAR--AARGSMRDALSLTDQAIA-FGSGQLQEAAVRQMLGSVDRSHVFRLIDALA 262 (618)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHH--HcCCCHHHHHHHHHHHHH-hcCCCcCHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 444444443 345677777666666655 345888888888877654 231 1 12223333444433
Q ss_pred hCccHHHHHHHHHHHHHcCCCC
Q 046547 254 ANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p 275 (343)
.|+...++++++++.+.|..|
T Consensus 263 -~~d~~~al~~l~~l~~~G~~~ 283 (618)
T PRK14951 263 -QGDGRTVVETADELRLNGLSA 283 (618)
T ss_pred -cCCHHHHHHHHHHHHHcCCCH
Confidence 366777777777777766654
No 463
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=32.32 E-value=1.8e+02 Score=20.42 Aligned_cols=48 Identities=17% Similarity=0.218 Sum_probs=21.9
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
.+.+.|++++|..+.+.+ ..||...|-+| +-.+.|..+++..-+..|.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----~~pdlepw~AL--ce~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 48 SLMNRGDYQSALQLGNKL----CYPDLEPWLAL--CEWRLGLGSALESRLNRLA 95 (115)
T ss_pred HHHccchHHHHHHhcCCC----CCchHHHHHHH--HHHhhccHHHHHHHHHHHH
Confidence 344555555555444433 24555544333 2234444444444444444
No 464
>PF07378 FlbT: Flagellar protein FlbT; InterPro: IPR009967 This family consists of several FlbT proteins. FlbT is a post-transcriptional repressor function in flagellum biogenesis. FlbT is associated with the 5' untranslated region (UTR) of fljK (25 kDa flagellin) mRNA and that this association requires a predicted loop structure in the transcript. Mutations within this loop abolish FlbT association and result in increased mRNA stability. It is therefore thought that FlbT promotes the degradation of flagellin mRNA by associating with the 5' UTR [].; GO: 0048027 mRNA 5'-UTR binding, 0006402 mRNA catabolic process, 0045718 negative regulation of flagellum assembly
Probab=32.29 E-value=2e+02 Score=21.02 Aligned_cols=66 Identities=12% Similarity=0.006 Sum_probs=37.1
Q ss_pred CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC----CCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKG----CPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 239 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.|-...|-.+-..|....+.+++...|......- ..|+....-.-+......|++-+|++....+.
T Consensus 49 TP~rrlYf~vQ~m~i~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~l~~~~~~v~~g~~y~ALk~~R~L~ 118 (126)
T PF07378_consen 49 TPLRRLYFAVQLMYIDPEDADEARDLYRRLLEELLQAFADPDAREGLDEANELVEAGRYYKALKALRKLI 118 (126)
T ss_pred CHHHHHHHHHHHHHcCCcChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHCCcHHHHHHHHHHhH
Confidence 3445566666666666666666666655544331 23444443344455666777777777666554
No 465
>PF02151 UVR: UvrB/uvrC motif; InterPro: IPR001943 During the process of Escherichia coli nucleotide excision repair, DNA damage recognition and processing are achieved by the action of the uvrA, uvrB, and uvrC gene products []. UvrB and UvrC share a common domain of around 35 amino acids, the so called UVR domain. This domain in UvrB can interact with the homologous domain in UvrC throughout a putative coiled coil structure. This interaction is important for the incision of the damaged strand [].; GO: 0003677 DNA binding, 0004518 nuclease activity, 0006289 nucleotide-excision repair; PDB: 3PXG_D 3PXI_C 1E52_B 1QOJ_B 2D7D_B 2NMV_B.
Probab=32.13 E-value=89 Score=16.83 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=21.1
Q ss_pred HHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 315 RQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 315 ~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+..-+..++...+++.|..+-+++.+++
T Consensus 7 l~~~m~~a~~~~dfE~Aa~~Rd~i~~l~ 34 (36)
T PF02151_consen 7 LEEKMEEAVENEDFEKAARLRDQIKALK 34 (36)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHHHHHH
Confidence 4455677888889999999888888775
No 466
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=31.56 E-value=5.9e+02 Score=26.20 Aligned_cols=211 Identities=8% Similarity=0.048 Sum_probs=102.0
Q ss_pred ccCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHH
Q 046547 25 LRSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104 (343)
Q Consensus 25 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 104 (343)
...++.......+|.-..-.|++..|+++.-+-.. ..-...+...+-.+.++...+.+..... +. |..
T Consensus 481 ~~~~s~~~d~d~~Is~alitgd~~~aV~~cl~~~~-------~a~AliiA~~gg~el~~~t~~~Y~~k~~---~k--~s~ 548 (1049)
T KOG0307|consen 481 SGNISLDSDIDGLISEALITGDFKSAVELCLEANK-------MADALIIAHAGGTELLESTRDKYLAKSN---SK--LSR 548 (1049)
T ss_pred CcccCCCCcHHHHHHHHHHhccHHHHHHHHHhhhH-------HHHHHHHHhcCCHHHHHHHHHHHHHHhC---Ch--HHH
Confidence 34444555577777777777888888777643221 1113344445555566666665544322 11 666
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHH-HHHHHhcCCccCHhhHHHHHHHHHc
Q 046547 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI-LLEMKSIGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 105 li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~-~~~m~~~g~~~~~~~~~~ll~~~~~ 183 (343)
+|. +..+ ++++...+.-+-+. -..+...+ ..|... .++.+-... -..+...|. .-...+.+|.-
T Consensus 549 li~-a~v~-~d~~~~ve~~~~k~------Wke~la~i-~t~~~~-~~~~elc~~Lg~rl~~~g~-----~~~~a~lcYi~ 613 (1049)
T KOG0307|consen 549 LIY-AMVN-RDLDDYVETCEVKQ------WKETLAAI-CTYAQT-DEFSELCDMLGDRLENAGD-----LTSAAILCYIC 613 (1049)
T ss_pred HHH-HHHh-hhHHHHHhhcchhh------HHHHHHHH-HHhcch-hhHHHHHHHHHHHHhhccc-----hhhhhhHHhhh
Confidence 663 4433 44544433322211 01122222 122221 122222222 222233332 33345567778
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~ 262 (343)
.|.+++...+|-+....+ .+...|..++.-....+ ..+..+..+. +... ....+...++.++.+|.+..|+
T Consensus 614 agsv~k~v~~w~~~~~~~--~~~~~y~~~~e~l~~~~---~~l~~~~~~~---~~s~~l~~~~~~yanllasQG~~~~A~ 685 (1049)
T KOG0307|consen 614 AGSVDKLVEIWLKALDLE--LAPTSYQDLAEDLMELT---LKLAQFSANK---TYSAGLAKKFSEYANLLASQGALAAAM 685 (1049)
T ss_pred ccChhhhHHHHHHhcccc--cchHHHHHHHHHHHHHH---hhhhhcccCc---cccHHHHHHHHHHHHHHHhcChHHHHH
Confidence 888888888887776654 45555655544332211 1111111111 0111 2333455556666778888888
Q ss_pred HHHHHHHH
Q 046547 263 EMIEFLER 270 (343)
Q Consensus 263 ~~~~~m~~ 270 (343)
.++.....
T Consensus 686 ~~l~~~~s 693 (1049)
T KOG0307|consen 686 SFLPLLPS 693 (1049)
T ss_pred hhcCcCcc
Confidence 87776554
No 467
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=31.45 E-value=3.9e+02 Score=24.02 Aligned_cols=90 Identities=11% Similarity=0.128 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH------------HHHHHhCccHHHHHHHHHHHHHcCC-CCc
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV------------AAALRANREMWKAVEMIEFLERKGC-PIG 276 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l------------i~~~~~~~~~~~a~~~~~~m~~~g~-~p~ 276 (343)
..|...+-..|++++|..++.+..- .||.++ ++.|...+++-.|.-+-++...+-+ .||
T Consensus 135 k~L~~ike~~Gdi~~Aa~il~el~V--------ETygsm~~~ekV~fiLEQmrKOG~~~D~vra~i~skKI~~K~F~~~~ 206 (439)
T KOG1498|consen 135 KMLAKIKEEQGDIAEAADILCELQV--------ETYGSMEKSEKVAFILEQMRLCLLRLDYVRAQIISKKINKKFFEKPD 206 (439)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhcch--------hhhhhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhHHhcCCcc
Confidence 4566677788999999988877653 244443 4566777788887766666554322 233
Q ss_pred h-----hhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 277 F-----QGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 277 ~-----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
. .-|+.+++...+.+.+-.+.+.++...+.|
T Consensus 207 ~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~ 242 (439)
T KOG1498|consen 207 VQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTG 242 (439)
T ss_pred HHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccc
Confidence 2 247888888888888888888888776654
No 468
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=31.08 E-value=3.9e+02 Score=23.87 Aligned_cols=131 Identities=10% Similarity=-0.043 Sum_probs=86.8
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCC-----CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh---cCCCCCchhHHH
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAE-----CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL---NMGLMPRQGMVI 246 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~p~~~~~~ 246 (343)
-++-.++...+.++++++.|+...+-- -.....+|-.|-.-|....|.++|.-+.....+ ..++.--..-|.
T Consensus 126 l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr 205 (518)
T KOG1941|consen 126 LSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYR 205 (518)
T ss_pred hhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHH
Confidence 345567777789999999999876532 122346788999999999999999887665442 133332223355
Q ss_pred HHH-----HHHHhCccHHHHHHHHHHHHH----cCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 247 KVA-----AALRANREMWKAVEMIEFLER----KGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 247 ~li-----~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.++ -++-..|....|.+.-++..+ .|-.|. ......+-+.|...|+.+.|+.-|++...
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~ 274 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMG 274 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHH
Confidence 443 356677888888888777543 343321 12334455668889999998888887653
No 469
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=31.05 E-value=2e+02 Score=20.48 Aligned_cols=16 Identities=0% Similarity=-0.026 Sum_probs=6.6
Q ss_pred cCCChhHHHHHHHHHH
Q 046547 218 TARKTNDAVEMMKEMV 233 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~ 233 (343)
+.|-.+++...+..+.
T Consensus 81 klGL~~~~e~~l~rla 96 (116)
T PF09477_consen 81 KLGLASALESRLTRLA 96 (116)
T ss_dssp HCT-HHHHHHHHHHHC
T ss_pred hhccHHHHHHHHHHHH
Confidence 4444444444444443
No 470
>KOG2297 consensus Predicted translation factor, contains W2 domain [Translation, ribosomal structure and biogenesis]
Probab=30.46 E-value=3.6e+02 Score=23.36 Aligned_cols=81 Identities=10% Similarity=0.130 Sum_probs=42.1
Q ss_pred HHHHHHHhCccHHHHHHHHHH-HHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc
Q 046547 247 KVAAALRANREMWKAVEMIEF-LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~-m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 325 (343)
.|.+-..+...+++.....++ |.+.++ |+.....++-++....+.|.+-.++..+- ......+|..|+.+++..
T Consensus 260 ~L~~q~s~e~p~~evi~~VKee~k~~nl-Pe~eVi~ivWs~iMsaveWnKkeelva~q----alrhlK~yaPLL~af~s~ 334 (412)
T KOG2297|consen 260 ELQEQVSEEDPVKEVILYVKEEMKRNNL-PETEVIGIVWSGIMSAVEWNKKEELVAEQ----ALRHLKQYAPLLAAFCSQ 334 (412)
T ss_pred HHHHHhccCCCHHHHHHHHHHHHHhcCC-CCceEEeeeHhhhhHHHhhchHHHHHHHH----HHHHHHhhhHHHHHHhcC
Confidence 344444455566666655554 555554 56544333333333333333322222111 011346788999999999
Q ss_pred CChhHHH
Q 046547 326 GEWKLAT 332 (343)
Q Consensus 326 g~~~~a~ 332 (343)
|+.+...
T Consensus 335 g~sEL~L 341 (412)
T KOG2297|consen 335 GQSELEL 341 (412)
T ss_pred ChHHHHH
Confidence 9887654
No 471
>PRK13342 recombination factor protein RarA; Reviewed
Probab=30.33 E-value=4.1e+02 Score=24.00 Aligned_cols=32 Identities=13% Similarity=0.020 Sum_probs=17.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 287 (343)
.+.+.|+..+..|.+.|..|....-..++.++
T Consensus 244 sd~~aal~~l~~~l~~G~d~~~i~rrl~~~a~ 275 (413)
T PRK13342 244 SDPDAALYYLARMLEAGEDPLFIARRLVIIAS 275 (413)
T ss_pred CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45666666666666666555544433333333
No 472
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=30.20 E-value=78 Score=15.56 Aligned_cols=12 Identities=8% Similarity=0.185 Sum_probs=5.5
Q ss_pred hhHHHHHHHHHH
Q 046547 222 TNDAVEMMKEMV 233 (343)
Q Consensus 222 ~~~a~~~~~~m~ 233 (343)
.+.|..+|+.+.
T Consensus 3 ~~~~r~i~e~~l 14 (33)
T smart00386 3 IERARKIYERAL 14 (33)
T ss_pred HHHHHHHHHHHH
Confidence 344444444444
No 473
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.07 E-value=5.6e+02 Score=25.42 Aligned_cols=23 Identities=17% Similarity=0.054 Sum_probs=13.9
Q ss_pred HHHHHHHhcccHhHHHHHHHHHh
Q 046547 282 VVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.|..-|...|++..|..++-..+
T Consensus 510 ~La~LYl~d~~Y~~Al~~ylklk 532 (846)
T KOG2066|consen 510 VLAHLYLYDNKYEKALPIYLKLQ 532 (846)
T ss_pred HHHHHHHHccChHHHHHHHHhcc
Confidence 35555666666666666665544
No 474
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=30.06 E-value=5.9e+02 Score=25.72 Aligned_cols=94 Identities=15% Similarity=0.083 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHH---------------HHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE---------------VVVE 285 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---------------~li~ 285 (343)
..+...+++.++..+.|+..+......++... .|+...++.+++++. .+......|+. .+++
T Consensus 180 ~~~~l~~~L~~il~~EGv~id~eal~lLa~~s--gGdlR~Al~eLEKLi-a~~~~~~IT~e~V~allg~~~~~~I~~lid 256 (824)
T PRK07764 180 PPEVMRGYLERICAQEGVPVEPGVLPLVIRAG--GGSVRDSLSVLDQLL-AGAGPEGVTYERAVALLGVTDSALIDEAVD 256 (824)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc--CCCHHHHHHHHHHHH-hhcCCCCCCHHHHHHHhcCCCHHHHHHHHH
Q ss_pred HHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHH
Q 046547 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (343)
+.. .++...++.+++++.+.|..|.......+
T Consensus 257 AL~-~~D~a~al~~l~~Li~~G~dp~~~L~~LL 288 (824)
T PRK07764 257 ALA-AGDGAALFGTVDRVIEAGHDPRRFAEDLL 288 (824)
T ss_pred HHH-cCCHHHHHHHHHHHHHcCCCHHHHHHHHH
No 475
>TIGR01503 MthylAspMut_E methylaspartate mutase, E subunit. This model represents the E (epsilon) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=29.93 E-value=4.5e+02 Score=24.25 Aligned_cols=182 Identities=15% Similarity=0.116 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcc----------CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc
Q 046547 115 PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR----------CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184 (343)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~----------~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 184 (343)
++++|.++.+.+ |....|...+...-+.+ ...++-.++++.+.+.| .......-|.+|.+.
T Consensus 29 d~~eav~y~k~~------p~~k~f~~~L~~a~~~g~~l~QPR~G~~~~~e~i~lL~~l~~~g---~ad~lp~TIDSyTR~ 99 (480)
T TIGR01503 29 DLQDAVDYHKSI------PAHKNFAEKLELAKKKGKTMAQPRAGVALLDEHIELLRTLQEEG---GADFLPSTIDAYTRQ 99 (480)
T ss_pred CHHHHHHHHHhC------CccccHHHHHHHHHhcCCEeecCCCCCCcHHHHHHHHHHHHHcc---CCCccceeeeccccc
Q ss_pred CcHHHHHHHHHHhhhCC---------CCCCHhhHHHHHHHH-----hcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 185 DQLVEAAKVLKGMSSAE---------CVPDLESYSIVIGAM-----STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~---------~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+++++|...+++-.+.| +.-...+...++.+. .+.|. ..+..+++-+.. .|+....----+---
T Consensus 100 n~y~~A~~~l~~s~~~~~s~LNGfP~VnhGv~~~R~l~~~v~~PvQvRHGt-pDarlL~e~~~a-~G~~a~EGG~ISYnl 177 (480)
T TIGR01503 100 NRYDEAAVGIKESIKAGRSLLNGFPGVNHGVKGCRKVLEAVNLPLQIRHGT-PDARLLAEIILA-GGFTSFEGGGISYNI 177 (480)
T ss_pred ccHHHHHHHHHhhhhcCcccccCCCcccccHHHHHHHHHhCCCCeeccCCC-CcHHHHHHHHHH-cCCCccCCCcceecc
Q ss_pred HHHhCccHHHHHHHHHHHH-------HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHh
Q 046547 251 ALRANREMWKAVEMIEFLE-------RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~-------~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 323 (343)
-|+|.=-++++..-|..+. +.|+..|..+|..|...+ ++|....--.+++++.
T Consensus 178 PYsK~vpLe~si~~WqyvdRL~g~y~e~gv~InrE~FGpLtgtL--------------------vPPsisiav~ilE~Ll 237 (480)
T TIGR01503 178 PYAKNVTLEKSLEDWQYCDRLVGFYEEQGVHINREPFGPLTGTL--------------------VPPSISNAIGIIEGLL 237 (480)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHHHHhcCceeccccccCCCCCc--------------------cChHHHHHHHHHHHHH
Q ss_pred ccCC
Q 046547 324 GVGE 327 (343)
Q Consensus 324 ~~g~ 327 (343)
-..+
T Consensus 238 a~eq 241 (480)
T TIGR01503 238 AAEQ 241 (480)
T ss_pred HHHc
No 476
>PRK14135 recX recombination regulator RecX; Provisional
Probab=29.91 E-value=3.3e+02 Score=22.72 Aligned_cols=83 Identities=6% Similarity=0.078 Sum_probs=43.7
Q ss_pred HhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHH
Q 046547 146 LERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDA 225 (343)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a 225 (343)
.+.|-..+.+..+++.+.+.|.--|..-....+..+.+.+. ..-.++-.++.+.|+.++.. ...+..+...+..+.|
T Consensus 82 ~~kg~~~~~Ie~vl~~l~~~~~ldD~~~a~~~~~~~~~~~~-~g~~~I~~kL~~kGi~~~~I--e~~l~~l~~~~~~d~a 158 (263)
T PRK14135 82 KKHEISEEIISEVIDKLKEEKYIDDKEYAESYVRTNINTGD-KGPRVIKQKLLQKGIEDEII--EEALSEYTEEDQIEVA 158 (263)
T ss_pred HHCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccc-cchHHHHHHHHHcCCCHHHH--HHHHHhCChhhHHHHH
Confidence 33343344555677777777765554444455555554332 23445667777788755432 3444444333444555
Q ss_pred HHHHHH
Q 046547 226 VEMMKE 231 (343)
Q Consensus 226 ~~~~~~ 231 (343)
..+...
T Consensus 159 ~~~~~k 164 (263)
T PRK14135 159 QKLAEK 164 (263)
T ss_pred HHHHHH
Confidence 444444
No 477
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=29.81 E-value=5.1e+02 Score=24.86 Aligned_cols=137 Identities=11% Similarity=-0.025 Sum_probs=71.6
Q ss_pred CccHHHHHHHHHHHHhccCchhH-HHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH
Q 046547 132 VPVPQIRLLLSSAWLERRCQSQS-VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS 210 (343)
Q Consensus 132 ~p~~~~~~~li~~~~~~~~~~~~-a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 210 (343)
.|+..+..+++.-+....-.-++ +-.++..| ++-+-|--...|.---.+...|+...|.+.+.........-.-+..-
T Consensus 568 ~~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v 646 (886)
T KOG4507|consen 568 MPDDHARKILLSRINNYTIPEEEIGSFLFHAI-NKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLV 646 (886)
T ss_pred CchHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHH
Confidence 36777766666554332211122 23334333 33344433344433333344677777777666554332111222333
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.|.+...+.|-..+|..++.+...- . ...+-++-.+-+++....+++.|++-|++..+.
T Consensus 647 ~la~~~~~~~~~~da~~~l~q~l~~-~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 647 NLANLLIHYGLHLDATKLLLQALAI-N-SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHhh-c-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 4555555566666777776665531 2 334455666667777777777777777776553
No 478
>COG2405 Predicted nucleic acid-binding protein, contains PIN domain [General function prediction only]
Probab=29.44 E-value=1.2e+02 Score=22.65 Aligned_cols=32 Identities=9% Similarity=0.069 Sum_probs=18.8
Q ss_pred hcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 289 ECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
+.|-+.+...++++|.+.|+..+...|+..+.
T Consensus 121 ~kgLisk~Kpild~LI~~GF~iS~~~~eeiL~ 152 (157)
T COG2405 121 SKGLISKDKPILDELIEKGFRISRSILEEILR 152 (157)
T ss_pred HcCcccchHHHHHHHHHhcCcccHHHHHHHHH
Confidence 44555566666666666666666666655443
No 479
>PF14162 YozD: YozD-like protein
Probab=29.34 E-value=1.3e+02 Score=17.83 Aligned_cols=17 Identities=24% Similarity=0.489 Sum_probs=10.9
Q ss_pred HHHHHHHHHhHCCCCCC
Q 046547 295 LAGKTVMGMTERGFIPY 311 (343)
Q Consensus 295 ~a~~~~~~m~~~g~~p~ 311 (343)
-|.-+|.++.++|..|+
T Consensus 13 IAefFy~eL~kRGyvP~ 29 (57)
T PF14162_consen 13 IAEFFYHELVKRGYVPT 29 (57)
T ss_pred HHHHHHHHHHHccCCCc
Confidence 35556666777777765
No 480
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=29.29 E-value=2.3e+02 Score=20.70 Aligned_cols=74 Identities=15% Similarity=0.156 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh-HHHHHHHHHccCcHHHHHHHH
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT-CNYLVSSLCAIDQLVEAAKVL 194 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-~~~ll~~~~~~~~~~~a~~~~ 194 (343)
++++.+.|..... .+-|..- ++.+++-.+..++..++|..|..+|+-..... |...-..+-..|++.+|.++|
T Consensus 49 Lerc~~~f~~~~~--YknD~Ry----LkiWi~ya~~~~dp~~if~~L~~~~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy 122 (125)
T smart00777 49 LERCIRYFEDDER--YKNDPRY----LKIWLKYADNCDEPRELFQFLYSKGIGTKLALFYEEWAQLLEAAGRYKKADEVY 122 (125)
T ss_pred HHHHHHHhhhhhh--hcCCHHH----HHHHHHHHHhcCCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHH
Q ss_pred H
Q 046547 195 K 195 (343)
Q Consensus 195 ~ 195 (343)
+
T Consensus 123 ~ 123 (125)
T smart00777 123 Q 123 (125)
T ss_pred H
No 481
>smart00031 DED Death effector domain.
Probab=29.20 E-value=1.3e+02 Score=19.76 Aligned_cols=38 Identities=13% Similarity=0.262 Sum_probs=24.8
Q ss_pred cchHHHHHHHchhcCC-CCChHHH-hhhhhhcccchHHHH
Q 046547 47 YQQIPELLGSFEEACQ-NPNPFSF-LSNFPQNHRIKVIDE 84 (343)
Q Consensus 47 ~~~a~~~~~~m~~~~~-~p~~~~~-~~~~~~~~~~~~~~~ 84 (343)
...+.++|..+.+.+. .|+...+ ...+..-+|.+.+..
T Consensus 37 ~~~~ldlf~~Le~~~~l~~~nl~~L~elL~~i~R~DLl~~ 76 (79)
T smart00031 37 IKTFLDLFSALEEQGLLSEDNLSLLAELLYRLRRLDLLRR 76 (79)
T ss_pred cCCHHHHHHHHHHcCCCCCccHHHHHHHHHHcCHHHHHHH
Confidence 5788899999988665 5554444 555556666555443
No 482
>PF13934 ELYS: Nuclear pore complex assembly
Probab=29.15 E-value=3.2e+02 Score=22.32 Aligned_cols=114 Identities=10% Similarity=0.051 Sum_probs=65.2
Q ss_pred hcCCCccHHHHHHHHHHHHhc-cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 046547 128 RSGCVPVPQIRLLLSSAWLER-RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206 (343)
Q Consensus 128 ~~~~~p~~~~~~~li~~~~~~-~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 206 (343)
..++++. |...+.++..- .+++++|.+.+ ..-.+.|+ .-..++.++...|+.+.|..++....-.... .
T Consensus 72 ~f~ip~~---~~~~~~g~W~LD~~~~~~A~~~L---~~ps~~~~--~~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s--~ 141 (226)
T PF13934_consen 72 AFGIPPK---YIKFIQGFWLLDHGDFEEALELL---SHPSLIPW--FPDKILQALLRRGDPKLALRYLRAVGPPLSS--P 141 (226)
T ss_pred HhCCCHH---HHHHHHHHHHhChHhHHHHHHHh---CCCCCCcc--cHHHHHHHHHHCCChhHHHHHHHhcCCCCCC--H
Confidence 4456654 44555554432 13466666555 22222222 2235888888899999999998876433222 2
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
..-..++.. ..++.+.+|..+-+....+ -....+..++..+....
T Consensus 142 ~~~~~~~~~-La~~~v~EAf~~~R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 142 EALTLYFVA-LANGLVTEAFSFQRSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HHHHHHHHH-HHcCCHHHHHHHHHhCchh----hhHHHHHHHHHHHHHHh
Confidence 222333333 6678899998887776642 11446677777766544
No 483
>PF02607 B12-binding_2: B12 binding domain; InterPro: IPR003759 Cobalamin-dependent methionine synthase (2.1.1.13 from EC) is a large modular protein that catalyses methyl transfer from methyltetrahydrofolate (CH3-H4folate) to homocysteine. During the catalytic cycle, it supports three distinct methyl transfer reactions, each involving the cobalamin (vitamin B12) cofactor and a substrate bound to its own functional unit []. The cobalamin cofactor plays an essential role in this reaction, accepting the methyl group from CH3-H4folate to form methylcob(III)alamin, and in turn donating the methyl group to homocysteine to generate methionine and cob(I)alamin. Methionine synthase is a large enzyme composed of four structurally and functionally distinct modules: the first two modules bind homocysteine and CH3-H4folate, the third module binds the cobalamin cofactor and the C-terminal module binds S-adenosylmethionine. The cobalamin-binding module is composed of two structurally distinct domains: a 4-helical bundle cap domain (residues 651-740 in the Escherichia coli enzyme) and an alpha/beta B12-binding domain (residues 741-896) (IPR006158 from INTERPRO). The 4-helical bundle forms a cap over the alpha/beta domain, which acts to shield the methyl ligand of cobalamin from solvent []. Furthermore, in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO). The alpha/beta domain is a common cobalamin-binding motif, whereas the 4-helical bundle domain with its methyl cap is a distinctive feature of methionine synthases. This entry represents the 4-helical bundle cap domain. This domain is also present in other shorter proteins that bind to B12, and is always found N terminus to the alpha/beta B12-binding domain.; GO: 0008705 methionine synthase activity, 0031419 cobalamin binding, 0046872 metal ion binding, 0009086 methionine biosynthetic process; PDB: 3EZX_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 2I2X_P.
Probab=29.09 E-value=80 Score=20.38 Aligned_cols=38 Identities=16% Similarity=0.024 Sum_probs=20.3
Q ss_pred hCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
..++.+.+.+++++..+.|..|.......+.-+..+-|
T Consensus 13 ~~~d~~~~~~~~~~~l~~g~~~~~i~~~~l~p~m~~iG 50 (79)
T PF02607_consen 13 LAGDEEEAEALLEEALAQGYPPEDIIEEILMPAMEEIG 50 (79)
T ss_dssp HTT-CCHHHHHHHHHHHCSSSTTHHHHHTHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 34556666666666666666555554444544443333
No 484
>PLN03060 inositol phosphatase-like protein; Provisional
Probab=28.50 E-value=3.1e+02 Score=22.04 Aligned_cols=30 Identities=10% Similarity=0.134 Sum_probs=18.4
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhccC
Q 046547 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150 (343)
Q Consensus 119 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 150 (343)
...+|+++.+ |.+|+..- ..+..++|+..+
T Consensus 54 lvt~fd~fm~-GY~Pee~~-~~IF~Alc~a~~ 83 (206)
T PLN03060 54 FVTVYDQLMD-GYPNATDR-DAIFKAYIEALG 83 (206)
T ss_pred HHHHHHHHHc-CCCChHHH-HHHHHHHHHHcC
Confidence 3466777654 67776654 556666676543
No 485
>PHA02798 ankyrin-like protein; Provisional
Probab=28.04 E-value=4.9e+02 Score=24.10 Aligned_cols=15 Identities=7% Similarity=0.007 Sum_probs=7.0
Q ss_pred HHHHHHhhhCCCCCC
Q 046547 191 AKVLKGMSSAECVPD 205 (343)
Q Consensus 191 ~~~~~~m~~~~~~~~ 205 (343)
.++.+-+.+.|..++
T Consensus 89 ~~iv~~Ll~~GadiN 103 (489)
T PHA02798 89 LDIVKILIENGADIN 103 (489)
T ss_pred HHHHHHHHHCCCCCC
Confidence 444444455554443
No 486
>PHA02798 ankyrin-like protein; Provisional
Probab=27.99 E-value=3e+02 Score=25.53 Aligned_cols=16 Identities=19% Similarity=0.090 Sum_probs=9.8
Q ss_pred HHHHHHHHhcCCccCH
Q 046547 156 ADILLEMKSIGYHPDC 171 (343)
Q Consensus 156 ~~~~~~m~~~g~~~~~ 171 (343)
.++.+.+.+.|..++.
T Consensus 89 ~~iv~~Ll~~GadiN~ 104 (489)
T PHA02798 89 LDIVKILIENGADINK 104 (489)
T ss_pred HHHHHHHHHCCCCCCC
Confidence 5566666667766543
No 487
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=27.89 E-value=5.1e+02 Score=24.30 Aligned_cols=85 Identities=13% Similarity=0.071 Sum_probs=50.6
Q ss_pred HHHHHHHHH-HHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC------------HhhHHHHHHHHHc
Q 046547 117 PLALAILQR-TLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD------------CGTCNYLVSSLCA 183 (343)
Q Consensus 117 ~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~------------~~~~~~ll~~~~~ 183 (343)
++..+.+.. +.+.|+..+......++.. .+++...+...++.+...+-..+ ......+++++ .
T Consensus 178 ~el~~~L~~i~~~egi~i~~~Al~~ia~~---s~GdlR~aln~Lekl~~~~~~It~~~V~~~l~~~~~~~if~Li~al-~ 253 (504)
T PRK14963 178 EEIAGKLRRLLEAEGREAEPEALQLVARL---ADGAMRDAESLLERLLALGTPVTRKQVEEALGLPPQERLRGIAAAL-A 253 (504)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH---cCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHCCCcHHHHHHHHHHH-H
Confidence 344444444 3456777777666666543 23567778777777654431111 12233344555 4
Q ss_pred cCcHHHHHHHHHHhhhCCCCCC
Q 046547 184 IDQLVEAAKVLKGMSSAECVPD 205 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~ 205 (343)
.++.++|..+++++...|..|.
T Consensus 254 ~~d~~~Al~~l~~Ll~~G~~~~ 275 (504)
T PRK14963 254 QGDAAEALSGAAQLYRDGFAAR 275 (504)
T ss_pred cCCHHHHHHHHHHHHHcCCCHH
Confidence 5788888888888888886554
No 488
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=27.79 E-value=5.2e+02 Score=24.38 Aligned_cols=60 Identities=17% Similarity=0.125 Sum_probs=35.6
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
..++.-|.+.+++++|..++..|.=.... ---...+.+++.+.+..--++....++.+..
T Consensus 412 ~eL~~~yl~~~qi~eAi~lL~smnW~~~g~~C~~~L~~I~n~Ll~~pl~~ere~~le~alg 472 (545)
T PF11768_consen 412 VELISQYLRCDQIEEAINLLLSMNWNTMGEQCFHCLSAIVNHLLRQPLTPEREAQLEAALG 472 (545)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhCCccccHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 45667788888888888888877522110 0122345555666665555555666666553
No 489
>PF01475 FUR: Ferric uptake regulator family; InterPro: IPR002481 The Ferric uptake regulator (FUR) family includes metal ion uptake regulator proteins. These are responsible for controlling the intracellular concentration of iron in many bacteria. Although iron is essential for most organisms, high concentrations can be toxic because of the formation of hydroxyl radicals []. FURs can also control zinc homeostasis [] and is the subject of research on the pathogenesis of mycobacteria.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent; PDB: 1MZB_A 2RGV_B 2FE3_B 3F8N_B 3EYY_B 2W57_A 2FU4_A 2O03_A 3MWM_B 2XIG_B ....
Probab=27.34 E-value=85 Score=22.41 Aligned_cols=44 Identities=11% Similarity=0.026 Sum_probs=19.7
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 141 li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
++..+....+ .-.|.++++.+.+.|...+..|.-.-|..+.+.|
T Consensus 13 Il~~l~~~~~-~~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 56 (120)
T PF01475_consen 13 ILELLKESPE-HLTAEEIYDKLRKKGPRISLATVYRTLDLLEEAG 56 (120)
T ss_dssp HHHHHHHHSS-SEEHHHHHHHHHHTTTT--HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCCC-CCCHHHHHHHhhhccCCcCHHHHHHHHHHHHHCC
Confidence 3333333333 3346666666665555555444333334444444
No 490
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.34 E-value=1.2e+02 Score=27.28 Aligned_cols=61 Identities=21% Similarity=0.201 Sum_probs=37.4
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHH--cCC----CC-chhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLER--KGC----PI-GFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~----~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
.+...|++.++-.|++..|+++++.+.- .++ .+ ...+|=.+--+|.-.+++.+|.+.|...
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~i 190 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQI 190 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556677788888888888888876542 221 11 1112333444567777788888777643
No 491
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=27.04 E-value=3.8e+02 Score=22.49 Aligned_cols=61 Identities=15% Similarity=0.180 Sum_probs=38.5
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCC-CCC-----CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERG-FIP-----YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g-~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.|+..|.+.|+.+.|-.++--+...+ ... +...-..|+......|+|+-+.++.+=++.++
T Consensus 184 dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 184 DLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESGDWDLCFELVRFLKALD 250 (258)
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 35666666777776666555443322 222 33444566777778888998888888777654
No 492
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=26.74 E-value=5.4e+02 Score=24.18 Aligned_cols=75 Identities=9% Similarity=0.058 Sum_probs=39.2
Q ss_pred HhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC---C----------CCCHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 163 KSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE---C----------VPDLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 163 ~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
.+.|+..+......++... .|++..|..++++....| + .++......+++++.. |+.+.++.++
T Consensus 192 ~~egi~~~~~al~~ia~~s--~GslR~al~lLdq~ia~~~~~It~~~V~~~lg~~~~~~i~~ll~al~~-~d~~~~l~~~ 268 (509)
T PRK14958 192 KEENVEFENAALDLLARAA--NGSVRDALSLLDQSIAYGNGKVLIADVKTMLGTIEPLLLFDILEALAA-KAGDRLLGCV 268 (509)
T ss_pred HHcCCCCCHHHHHHHHHHc--CCcHHHHHHHHHHHHhcCCCCcCHHHHHHHHCCCCHHHHHHHHHHHHc-CCHHHHHHHH
Confidence 3445555555554444332 466666666666544332 1 1122222334444433 6777777777
Q ss_pred HHHHhcCCCCCc
Q 046547 230 KEMVLNMGLMPR 241 (343)
Q Consensus 230 ~~m~~~~~~~p~ 241 (343)
+++... |..|.
T Consensus 269 ~~l~~~-g~~~~ 279 (509)
T PRK14958 269 TRLVEQ-GVDFS 279 (509)
T ss_pred HHHHHc-CCCHH
Confidence 777763 76664
No 493
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=26.49 E-value=2.9e+02 Score=26.35 Aligned_cols=28 Identities=7% Similarity=-0.084 Sum_probs=0.0
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhhHHHH
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQGYEVV 283 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l 283 (343)
+++.+|.+.+-.+......|...-...|
T Consensus 509 ~~~~~Aa~~Lv~Ll~~~~~Pk~f~~~LL 536 (566)
T PF07575_consen 509 GDFREAASLLVSLLKSPIAPKSFWPLLL 536 (566)
T ss_dssp ----------------------------
T ss_pred hhHHHHHHHHHHHHCCCCCcHHHHHHHH
Confidence 5555555555555555555544433333
No 494
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=26.38 E-value=5.8e+02 Score=24.46 Aligned_cols=60 Identities=8% Similarity=0.088 Sum_probs=25.4
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcC
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIG 166 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g 166 (343)
.|..|+. .+.. =+.++-.++++++...- .....++.++.++...|. ..|..++.++...+
T Consensus 348 ~f~~Lv~-~lr~-l~~~~L~~l~~~~~~~~--~~~~~r~~~lDal~~aGT--~~av~~i~~~I~~~ 407 (618)
T PF01347_consen 348 KFSRLVR-LLRT-LSYEDLEELYKQLKSKS--KKEQARKIFLDALPQAGT--NPAVKFIKDLIKSK 407 (618)
T ss_dssp HHHHHHH-HHTT-S-HHHHHHHHHHHTTS-----HHHHHHHHHHHHHH-S--HHHHHHHHHHHHTT
T ss_pred HHHHHHH-HHhc-CCHHHHHHHHHHHHhhc--cHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHcC
Confidence 3555554 3333 34555555555554321 233445555555555442 23444444444433
No 495
>COG0320 LipA Lipoate synthase [Coenzyme metabolism]
Probab=26.32 E-value=68 Score=26.96 Aligned_cols=81 Identities=19% Similarity=0.124 Sum_probs=52.9
Q ss_pred ChHHHHHHHHHHHhcCCCccHHHHHH-----HHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHH
Q 046547 115 PLPLALAILQRTLRSGCVPVPQIRLL-----LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189 (343)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~p~~~~~~~-----li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 189 (343)
|+..-...++.+.+.+ ||....|. |-. ..+.+-.++..+.+++..++. .|+..|=+.+|-+++. ..++
T Consensus 157 DF~G~~~al~~v~~~~--pdV~nHNvETVprL~~-~VRp~A~Y~~SL~~L~~~k~~--~P~i~TKSgiMlGLGE--t~~E 229 (306)
T COG0320 157 DFRGNDDALEIVADAG--PDVFNHNVETVPRLYP-RVRPGATYERSLSLLERAKEL--GPDIPTKSGLMVGLGE--TDEE 229 (306)
T ss_pred cccCCHHHHHHHHhcC--cchhhcccccchhccc-ccCCCCcHHHHHHHHHHHHHh--CCCcccccceeeecCC--cHHH
Confidence 4555555556666654 55544332 222 234455678888888888774 6788888888877764 3567
Q ss_pred HHHHHHHhhhCCC
Q 046547 190 AAKVLKGMSSAEC 202 (343)
Q Consensus 190 a~~~~~~m~~~~~ 202 (343)
..++++++.+.|+
T Consensus 230 v~e~m~DLr~~gv 242 (306)
T COG0320 230 VIEVMDDLRSAGV 242 (306)
T ss_pred HHHHHHHHHHcCC
Confidence 8888888888775
No 496
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=26.22 E-value=3.8e+02 Score=22.30 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=30.6
Q ss_pred hcCCChhHHHHHHHHHHhcCCC-----------CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch
Q 046547 217 STARKTNDAVEMMKEMVLNMGL-----------MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 217 ~~~~~~~~a~~~~~~m~~~~~~-----------~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 277 (343)
...|+..+|+..++.-....|. .|.+.....++..|. .+++++|.+++.++-+.|+.|..
T Consensus 203 ta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~D 273 (333)
T KOG0991|consen 203 TAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPED 273 (333)
T ss_pred hccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHH
Confidence 3456666666665554432121 244444444554433 33466666666666666665543
No 497
>PRK11905 bifunctional proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase; Reviewed
Probab=26.21 E-value=2.9e+02 Score=29.29 Aligned_cols=22 Identities=18% Similarity=0.164 Sum_probs=10.5
Q ss_pred HHhcccHhHHHHHHHHHhHCCC
Q 046547 287 CLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
|+--...++|++..+++.+.|+
T Consensus 179 Fv~Geti~eal~~~~~l~~~G~ 200 (1208)
T PRK11905 179 FVTGETIEEALKRARELEARGY 200 (1208)
T ss_pred eccCCCHHHHHHHHHHHHhCCC
Confidence 3334444555555555554444
No 498
>PRK00117 recX recombination regulator RecX; Reviewed
Probab=26.11 E-value=2.9e+02 Score=20.83 Aligned_cols=31 Identities=13% Similarity=-0.008 Sum_probs=15.3
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCc
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP 133 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p 133 (343)
..++..+. ++.. ..-...++.+.+.+.|+.|
T Consensus 12 ~a~~~al~-~L~~--r~~s~~el~~kL~~kg~~~ 42 (157)
T PRK00117 12 SARARALR-LLAR--REHSRAELRRKLAAKGFSE 42 (157)
T ss_pred HHHHHHHH-HHcc--chhHHHHHHHHHHhcCCCH
Confidence 44555554 3433 2344445555666665544
No 499
>cd07229 Pat_TGL3_like Triacylglycerol lipase 3. Triacylglycerol lipase 3 (TGL3) are responsible for all the TAG lipase activity of the lipid particle. Triacylglycerol (TAG) lipases are also necessary for the mobilization of TAG stored in lipid particles. TGL3 contains the consensus sequence motif GXSXG, which is found in lipolytic enzymes. This family includes Tgl3p from Saccharomyces cerevisiae.
Probab=25.99 E-value=4.9e+02 Score=23.46 Aligned_cols=28 Identities=21% Similarity=0.248 Sum_probs=12.2
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 305 ERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 305 ~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
..|...|...+...++.+...-.+++|.
T Consensus 179 ~~G~l~D~~~l~~~lr~~lgd~TFeEAy 206 (391)
T cd07229 179 REGYFLDVKVLEEFVRANLGDLTFEEAY 206 (391)
T ss_pred cCCCcccHHHHHHHHHHHcCCCcHHHHH
Confidence 3344444444444444444444444443
No 500
>smart00544 MA3 Domain in DAP-5, eIF4G, MA-3 and other proteins. Highly alpha-helical. May contain repeats and/or regions similar to MIF4G domains Ponting (TIBS) "Novel eIF4G domain homologues" in press
Probab=25.93 E-value=2.4e+02 Score=19.73 Aligned_cols=61 Identities=13% Similarity=0.083 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcC
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKG 272 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g 272 (343)
...++..|...+++++|.+-+.++.. .... ......+|..+...+ .-+.+..++..+.+.+
T Consensus 5 i~~~l~ey~~~~D~~ea~~~l~~L~~-~~~~--~~vv~~~i~~~le~~~~~~~~~~~Ll~~L~~~~ 67 (113)
T smart00544 5 IFLIIEEYLSSGDTDEAVHCLLELKL-PEQH--HEVVKVLLTCALEEKRTYREMYSVLLSRLCQAN 67 (113)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHhCC-Ccch--HHHHHHHHHHHHcCCccHHHHHHHHHHHHHHcC
Confidence 34566777788888888888888764 1222 223334444444332 3444555666665544
Done!