Query 046547
Match_columns 343
No_of_seqs 346 out of 1824
Neff 10.9
Searched_HMMs 29240
Date Mon Mar 25 23:22:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/046547.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/046547hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g26_A Pentatricopeptide repea 100.0 4E-37 1.4E-41 278.6 22.2 188 100-289 27-222 (501)
2 4g26_A Pentatricopeptide repea 100.0 2.8E-36 9.6E-41 273.1 23.5 207 117-325 7-223 (501)
3 2xpi_A Anaphase-promoting comp 100.0 1.9E-25 6.5E-30 208.1 33.9 304 30-342 199-580 (597)
4 2xpi_A Anaphase-promoting comp 99.9 8.5E-25 2.9E-29 203.7 32.8 204 133-341 303-545 (597)
5 1w3b_A UDP-N-acetylglucosamine 99.9 4E-20 1.4E-24 163.1 33.5 302 29-343 65-370 (388)
6 1w3b_A UDP-N-acetylglucosamine 99.9 2.3E-19 7.9E-24 158.2 32.8 300 30-342 32-335 (388)
7 3spa_A Mtrpol, DNA-directed RN 99.9 1.2E-22 4.1E-27 190.2 10.6 119 171-290 127-249 (1134)
8 2y4t_A DNAJ homolog subfamily 99.9 1.5E-19 5.1E-24 162.4 30.4 301 29-343 24-360 (450)
9 3spa_A Mtrpol, DNA-directed RN 99.9 2.4E-22 8.1E-27 188.2 8.6 130 203-332 124-256 (1134)
10 3ieg_A DNAJ homolog subfamily 99.8 2.6E-16 8.8E-21 136.5 32.3 300 30-343 2-337 (359)
11 2gw1_A Mitochondrial precursor 99.8 1.3E-16 4.5E-21 145.4 27.6 301 31-342 6-402 (514)
12 2y4t_A DNAJ homolog subfamily 99.8 6.9E-16 2.4E-20 138.4 31.3 295 29-337 58-405 (450)
13 2gw1_A Mitochondrial precursor 99.8 4.1E-16 1.4E-20 142.1 27.8 233 101-342 239-479 (514)
14 3hym_B Cell division cycle pro 99.8 7.4E-16 2.5E-20 132.1 26.5 291 30-329 21-322 (330)
15 1fch_A Peroxisomal targeting s 99.7 1.4E-15 4.9E-20 132.6 25.3 284 44-342 14-315 (368)
16 3hym_B Cell division cycle pro 99.7 6.7E-15 2.3E-19 126.1 28.5 264 70-342 29-300 (330)
17 1fch_A Peroxisomal targeting s 99.7 1.3E-15 4.5E-20 132.8 24.4 288 41-337 35-355 (368)
18 3mkr_A Coatomer subunit epsilo 99.7 4.5E-15 1.5E-19 125.5 24.9 271 39-334 7-287 (291)
19 3fp2_A TPR repeat-containing p 99.7 1.3E-14 4.6E-19 132.9 30.0 301 30-342 24-408 (537)
20 4eqf_A PEX5-related protein; a 99.7 1.8E-15 6.1E-20 132.1 22.2 236 99-342 65-311 (365)
21 3fp2_A TPR repeat-containing p 99.7 1.5E-14 5.2E-19 132.6 29.1 226 109-342 252-492 (537)
22 3mkr_A Coatomer subunit epsilo 99.7 5.4E-15 1.8E-19 125.0 22.5 251 73-343 9-266 (291)
23 4eqf_A PEX5-related protein; a 99.7 6.5E-15 2.2E-19 128.5 22.0 258 70-337 72-352 (365)
24 3cv0_A Peroxisome targeting si 99.7 1.8E-14 6.2E-19 123.2 22.9 265 32-338 22-312 (327)
25 3uq3_A Heat shock protein STI1 99.6 1E-13 3.5E-18 114.4 23.5 226 100-342 6-237 (258)
26 3cv0_A Peroxisome targeting si 99.6 1.6E-13 5.4E-18 117.3 25.0 234 100-342 22-270 (327)
27 3ieg_A DNAJ homolog subfamily 99.6 1.2E-12 4E-17 113.3 30.6 285 29-324 35-352 (359)
28 1b89_A Protein (clathrin heavy 99.6 3E-15 1E-19 130.5 11.5 250 43-335 15-266 (449)
29 1b89_A Protein (clathrin heavy 99.6 2.2E-14 7.4E-19 125.1 16.4 267 30-335 31-305 (449)
30 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-12 6.6E-17 106.6 24.9 200 100-306 38-238 (252)
31 2vq2_A PILW, putative fimbrial 99.6 2.6E-12 8.9E-17 103.5 24.8 202 99-306 8-211 (225)
32 1ouv_A Conserved hypothetical 99.6 1.8E-11 6.2E-16 102.1 30.6 223 99-342 6-252 (273)
33 2pl2_A Hypothetical conserved 99.6 4.5E-13 1.5E-17 108.1 19.9 180 152-338 21-211 (217)
34 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-12 4.2E-17 109.0 21.6 249 74-335 16-269 (275)
35 2vq2_A PILW, putative fimbrial 99.5 6.1E-12 2.1E-16 101.3 24.0 204 134-342 7-212 (225)
36 2ho1_A Type 4 fimbrial biogene 99.5 7.3E-12 2.5E-16 103.0 24.9 202 135-342 37-239 (252)
37 2q7f_A YRRB protein; TPR, prot 99.5 9.6E-13 3.3E-17 107.5 19.3 201 99-307 23-223 (243)
38 3u4t_A TPR repeat-containing p 99.5 3E-12 1E-16 106.5 22.2 227 109-343 12-252 (272)
39 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.7E-12 9.3E-17 106.9 17.4 223 112-342 17-245 (275)
40 3nf1_A KLC 1, kinesin light ch 99.5 6.6E-12 2.3E-16 106.4 19.7 241 99-342 27-308 (311)
41 2pl2_A Hypothetical conserved 99.5 1.2E-11 4.1E-16 99.7 20.1 198 98-304 4-212 (217)
42 2q7f_A YRRB protein; TPR, prot 99.4 1E-11 3.5E-16 101.4 18.8 203 133-342 21-223 (243)
43 2ond_A Cleavage stimulation fa 99.4 2.4E-10 8.1E-15 97.3 27.8 220 117-342 33-271 (308)
44 2ooe_A Cleavage stimulation fa 99.4 8E-10 2.7E-14 101.3 32.7 302 30-341 45-454 (530)
45 2h6f_A Protein farnesyltransfe 99.4 3.2E-11 1.1E-15 105.5 21.9 232 100-342 98-349 (382)
46 3vtx_A MAMA; tetratricopeptide 99.4 3.3E-11 1.1E-15 94.2 20.0 166 171-341 5-170 (184)
47 1ouv_A Conserved hypothetical 99.4 6.4E-10 2.2E-14 92.7 27.9 224 30-307 5-252 (273)
48 3uq3_A Heat shock protein STI1 99.4 3.1E-11 1E-15 99.3 19.6 192 135-342 5-203 (258)
49 2xm6_A Protein corresponding t 99.4 2E-09 6.7E-14 97.7 32.9 222 30-270 38-287 (490)
50 4g1t_A Interferon-induced prot 99.4 1.5E-10 5E-15 104.4 24.6 309 28-342 91-460 (472)
51 2xm6_A Protein corresponding t 99.4 4.6E-09 1.6E-13 95.3 34.0 210 113-341 200-432 (490)
52 4a1s_A PINS, partner of inscut 99.4 1.4E-11 4.9E-16 108.9 16.4 240 101-342 88-373 (411)
53 4abn_A Tetratricopeptide repea 99.4 4.7E-11 1.6E-15 107.9 19.8 212 116-337 84-317 (474)
54 3ulq_A Response regulator aspa 99.4 5.8E-11 2E-15 104.2 19.2 230 109-342 112-369 (383)
55 3sf4_A G-protein-signaling mod 99.4 2.8E-11 9.5E-16 106.5 17.2 278 30-341 8-336 (406)
56 3nf1_A KLC 1, kinesin light ch 99.4 1E-10 3.5E-15 99.0 19.9 233 70-305 34-306 (311)
57 3as5_A MAMA; tetratricopeptide 99.4 9.7E-11 3.3E-15 91.0 18.1 165 172-341 9-173 (186)
58 3ro2_A PINS homolog, G-protein 99.3 1.9E-11 6.3E-16 104.5 15.0 276 33-342 7-333 (338)
59 3u4t_A TPR repeat-containing p 99.3 2.9E-10 9.8E-15 94.5 21.7 214 100-320 38-263 (272)
60 3edt_B KLC 2, kinesin light ch 99.3 4.6E-11 1.6E-15 99.5 16.6 230 111-342 12-282 (283)
61 4g1t_A Interferon-induced prot 99.3 2.1E-09 7.3E-14 96.7 27.9 310 26-342 46-402 (472)
62 3q15_A PSP28, response regulat 99.3 5.2E-10 1.8E-14 98.0 22.3 312 27-342 6-366 (378)
63 3sf4_A G-protein-signaling mod 99.3 1.1E-10 3.9E-15 102.6 17.5 266 32-328 48-363 (406)
64 1xi4_A Clathrin heavy chain; a 99.3 4.7E-09 1.6E-13 102.5 29.2 254 37-340 1055-1308(1630)
65 2ond_A Cleavage stimulation fa 99.3 2.6E-09 9E-14 90.7 24.8 183 117-306 81-270 (308)
66 2ooe_A Cleavage stimulation fa 99.3 1.3E-08 4.5E-13 93.2 30.0 219 117-341 255-492 (530)
67 1xi4_A Clathrin heavy chain; a 99.2 6.9E-09 2.4E-13 101.4 27.8 261 27-339 981-1248(1630)
68 2h6f_A Protein farnesyltransfe 99.2 2.8E-09 9.7E-14 93.1 22.5 239 71-323 105-364 (382)
69 4a1s_A PINS, partner of inscut 99.2 1.9E-10 6.6E-15 101.6 15.4 230 109-341 57-332 (411)
70 3vtx_A MAMA; tetratricopeptide 99.2 3.8E-09 1.3E-13 82.3 21.0 166 135-306 5-170 (184)
71 4i17_A Hypothetical protein; T 99.2 1.2E-09 4.1E-14 88.4 18.7 197 133-343 5-211 (228)
72 4abn_A Tetratricopeptide repea 99.2 1.5E-09 5E-14 98.1 20.4 186 152-343 84-289 (474)
73 3edt_B KLC 2, kinesin light ch 99.2 3.6E-10 1.2E-14 94.1 15.3 224 79-305 21-280 (283)
74 3as5_A MAMA; tetratricopeptide 99.2 2.3E-09 7.9E-14 83.1 18.0 150 151-305 23-172 (186)
75 4gyw_A UDP-N-acetylglucosamine 99.2 1.7E-09 5.7E-14 102.1 19.8 165 171-341 9-174 (723)
76 3ro2_A PINS homolog, G-protein 99.2 6.5E-10 2.2E-14 94.8 15.0 230 109-341 14-292 (338)
77 2fo7_A Synthetic consensus TPR 99.1 3.1E-09 1.1E-13 77.6 15.6 128 210-341 5-132 (136)
78 1hz4_A MALT regulatory protein 99.1 4.2E-08 1.4E-12 85.5 23.8 189 151-340 108-321 (373)
79 4i17_A Hypothetical protein; T 99.1 5.4E-08 1.9E-12 78.5 22.0 195 98-307 6-210 (228)
80 3ulq_A Response regulator aspa 99.1 9.6E-09 3.3E-13 90.0 18.7 164 178-341 110-293 (383)
81 3mv2_B Coatomer subunit epsilo 99.1 2.3E-08 8E-13 83.6 19.6 144 119-269 85-238 (310)
82 1qqe_A Vesicular transport pro 99.1 6.8E-09 2.3E-13 87.5 16.7 133 172-304 78-226 (292)
83 3e4b_A ALGK; tetratricopeptide 99.0 1.7E-08 5.8E-13 90.5 19.1 283 37-340 9-350 (452)
84 1hz4_A MALT regulatory protein 99.0 9.6E-08 3.3E-12 83.2 23.0 232 109-341 23-282 (373)
85 2fo7_A Synthetic consensus TPR 99.0 2.2E-08 7.6E-13 72.9 15.4 128 174-305 4-131 (136)
86 4gyw_A UDP-N-acetylglucosamine 99.0 3E-08 1E-12 93.6 18.8 147 151-303 24-171 (723)
87 3qky_A Outer membrane assembly 99.0 1.2E-07 4E-12 78.3 20.1 60 282-341 153-224 (261)
88 1qqe_A Vesicular transport pro 98.9 2E-08 6.9E-13 84.6 13.7 204 118-342 3-229 (292)
89 3u3w_A Transcriptional activat 98.9 7.4E-07 2.5E-11 74.9 22.9 212 120-341 31-266 (293)
90 2yhc_A BAMD, UPF0169 lipoprote 98.9 2.6E-07 9E-12 74.4 19.0 177 143-342 12-214 (225)
91 3q15_A PSP28, response regulat 98.9 2.7E-07 9.1E-12 80.6 20.5 226 74-305 112-364 (378)
92 3mv2_B Coatomer subunit epsilo 98.9 3.2E-07 1.1E-11 76.7 18.7 181 155-343 85-284 (310)
93 3qky_A Outer membrane assembly 98.8 4.3E-07 1.5E-11 74.9 19.1 171 110-306 25-224 (261)
94 2qfc_A PLCR protein; TPR, HTH, 98.8 1.3E-06 4.6E-11 73.3 22.4 169 172-340 76-265 (293)
95 3e4b_A ALGK; tetratricopeptide 98.8 1.5E-06 5.3E-11 77.8 23.5 16 46-61 89-104 (452)
96 3rjv_A Putative SEL1 repeat pr 98.8 9.5E-07 3.2E-11 70.5 19.7 177 117-307 3-198 (212)
97 3urz_A Uncharacterized protein 98.8 2.5E-07 8.5E-12 73.7 15.6 165 144-318 13-196 (208)
98 3rjv_A Putative SEL1 repeat pr 98.8 2.4E-06 8.1E-11 68.2 21.4 175 154-341 4-197 (212)
99 2vsy_A XCC0866; transferase, g 98.8 2.3E-07 8E-12 85.7 16.9 153 150-307 3-158 (568)
100 2ifu_A Gamma-SNAP; membrane fu 98.7 5.1E-07 1.7E-11 76.5 16.8 184 144-333 45-253 (307)
101 2ifu_A Gamma-SNAP; membrane fu 98.7 5E-07 1.7E-11 76.6 15.7 200 113-339 4-222 (307)
102 3dra_A Protein farnesyltransfe 98.7 1.4E-05 4.9E-10 67.2 24.0 226 110-342 43-289 (306)
103 2yhc_A BAMD, UPF0169 lipoprote 98.7 2.5E-06 8.4E-11 68.7 18.7 174 110-307 14-214 (225)
104 1hh8_A P67PHOX, NCF-2, neutrop 98.7 1.9E-06 6.6E-11 68.4 17.6 122 141-270 12-149 (213)
105 2r5s_A Uncharacterized protein 98.7 2.8E-07 9.5E-12 71.2 12.2 160 174-339 9-171 (176)
106 1hh8_A P67PHOX, NCF-2, neutrop 98.7 8.8E-07 3E-11 70.4 15.1 127 173-305 8-149 (213)
107 3qou_A Protein YBBN; thioredox 98.6 8.8E-07 3E-11 74.3 15.1 166 169-339 115-282 (287)
108 2pzi_A Probable serine/threoni 98.6 2.5E-07 8.7E-12 87.2 13.0 126 173-304 435-561 (681)
109 3urz_A Uncharacterized protein 98.6 3.2E-06 1.1E-10 67.2 17.6 163 110-282 14-195 (208)
110 3gw4_A Uncharacterized protein 98.6 4.4E-07 1.5E-11 71.4 12.2 155 151-306 7-176 (203)
111 3qou_A Protein YBBN; thioredox 98.6 1.7E-06 5.7E-11 72.6 16.2 165 134-304 116-282 (287)
112 4e6h_A MRNA 3'-END-processing 98.6 9.7E-05 3.3E-09 69.1 29.3 133 29-164 64-222 (679)
113 2vsy_A XCC0866; transferase, g 98.6 1.2E-06 4.2E-11 80.8 16.6 153 113-272 2-158 (568)
114 1a17_A Serine/threonine protei 98.6 2.3E-06 7.7E-11 64.8 15.2 128 172-303 14-143 (166)
115 2pzi_A Probable serine/threoni 98.6 4.6E-07 1.6E-11 85.5 13.3 154 182-342 402-564 (681)
116 2qfc_A PLCR protein; TPR, HTH, 98.6 6.2E-06 2.1E-10 69.2 18.9 166 138-304 78-264 (293)
117 3u3w_A Transcriptional activat 98.6 9.5E-06 3.2E-10 68.0 19.5 175 158-341 33-225 (293)
118 4ga2_A E3 SUMO-protein ligase 98.6 3E-07 1E-11 69.1 9.1 143 178-327 4-149 (150)
119 2r5s_A Uncharacterized protein 98.6 1.6E-06 5.4E-11 66.9 13.3 155 144-304 15-171 (176)
120 4ga2_A E3 SUMO-protein ligase 98.6 6.2E-07 2.1E-11 67.3 10.6 136 149-291 10-148 (150)
121 4e6h_A MRNA 3'-END-processing 98.5 6.7E-06 2.3E-10 76.9 18.7 220 117-342 326-571 (679)
122 1na0_A Designed protein CTPR3; 98.5 5.9E-06 2E-10 58.9 14.4 95 208-305 11-105 (125)
123 1a17_A Serine/threonine protei 98.5 7.6E-06 2.6E-10 61.8 15.6 127 209-339 16-144 (166)
124 2vyi_A SGTA protein; chaperone 98.5 6.2E-06 2.1E-10 59.3 13.7 117 207-327 13-129 (131)
125 4gco_A Protein STI-1; structur 98.4 5.8E-06 2E-10 59.9 13.0 103 202-307 8-111 (126)
126 1na0_A Designed protein CTPR3; 98.4 7.8E-06 2.7E-10 58.2 13.7 98 171-271 9-106 (125)
127 2e2e_A Formate-dependent nitri 98.4 1.9E-06 6.6E-11 66.3 10.7 123 181-307 20-145 (177)
128 2lni_A Stress-induced-phosphop 98.4 8.1E-06 2.8E-10 59.0 13.5 96 207-305 17-112 (133)
129 3gyz_A Chaperone protein IPGC; 98.4 5.4E-06 1.9E-10 62.1 12.0 102 206-313 36-138 (151)
130 3gw4_A Uncharacterized protein 98.4 5.3E-06 1.8E-10 65.1 11.9 155 113-269 5-174 (203)
131 2uy1_A Cleavage stimulation fa 98.4 0.00048 1.7E-08 62.2 26.1 170 155-338 198-380 (493)
132 3gyz_A Chaperone protein IPGC; 98.3 3.1E-05 1.1E-09 57.9 15.3 102 171-277 36-137 (151)
133 2vyi_A SGTA protein; chaperone 98.3 1.1E-05 3.7E-10 58.0 12.6 119 170-292 11-129 (131)
134 2vgx_A Chaperone SYCD; alterna 98.3 3.1E-06 1E-10 63.3 9.8 109 193-306 9-118 (148)
135 2lni_A Stress-induced-phosphop 98.3 1.6E-05 5.6E-10 57.3 13.6 116 170-290 15-131 (133)
136 2e2e_A Formate-dependent nitri 98.3 1.2E-05 4E-10 61.8 13.2 115 152-270 26-143 (177)
137 4gco_A Protein STI-1; structur 98.3 1.5E-05 5.2E-10 57.6 12.9 101 172-277 14-114 (126)
138 1p5q_A FKBP52, FK506-binding p 98.3 1.8E-05 6.3E-10 67.8 15.1 130 171-304 147-292 (336)
139 2c2l_A CHIP, carboxy terminus 98.3 8.6E-06 3E-10 67.9 12.6 85 110-198 14-99 (281)
140 2kck_A TPR repeat; tetratricop 98.3 1.7E-05 5.7E-10 55.3 12.3 94 208-305 8-105 (112)
141 1p5q_A FKBP52, FK506-binding p 98.3 1.9E-05 6.5E-10 67.7 14.2 130 205-339 146-292 (336)
142 3upv_A Heat shock protein STI1 98.3 2.2E-05 7.6E-10 56.5 12.4 98 206-306 4-101 (126)
143 1elw_A TPR1-domain of HOP; HOP 98.3 2.5E-05 8.7E-10 54.9 12.5 100 205-307 3-102 (118)
144 4f3v_A ESX-1 secretion system 98.3 4.3E-05 1.5E-09 63.0 15.3 205 100-318 9-247 (282)
145 3q49_B STIP1 homology and U bo 98.3 2.3E-05 7.9E-10 57.1 12.5 100 204-306 7-106 (137)
146 3sz7_A HSC70 cochaperone (SGT) 98.3 1.9E-05 6.4E-10 59.9 12.4 99 205-306 10-108 (164)
147 2dba_A Smooth muscle cell asso 98.2 2.9E-05 1E-09 57.2 13.1 109 204-318 26-139 (148)
148 3q7a_A Farnesyltransferase alp 98.2 0.00032 1.1E-08 59.7 20.6 224 109-339 63-329 (349)
149 2xcb_A PCRH, regulatory protei 98.2 1.8E-05 6E-10 58.5 11.5 98 206-306 18-115 (142)
150 3ro3_A PINS homolog, G-protein 98.2 1.2E-05 4E-10 60.2 10.5 134 208-341 11-158 (164)
151 4b4t_Q 26S proteasome regulato 98.2 0.0002 6.7E-09 63.3 20.0 165 174-338 58-242 (434)
152 1elr_A TPR2A-domain of HOP; HO 98.2 1.3E-05 4.5E-10 57.6 10.3 96 209-306 7-108 (131)
153 2kck_A TPR repeat; tetratricop 98.2 2.9E-05 1E-09 54.0 11.7 95 244-340 8-105 (112)
154 4gcn_A Protein STI-1; structur 98.2 2.9E-05 9.8E-10 56.2 11.8 94 210-305 12-111 (127)
155 1elw_A TPR1-domain of HOP; HOP 98.2 7.6E-05 2.6E-09 52.3 13.8 99 170-271 3-101 (118)
156 3dra_A Protein farnesyltransfe 98.2 0.00062 2.1E-08 57.2 20.8 185 115-305 84-286 (306)
157 1elr_A TPR2A-domain of HOP; HO 98.2 2.2E-05 7.4E-10 56.4 10.4 99 172-271 5-108 (131)
158 2c2l_A CHIP, carboxy terminus 98.1 1.5E-05 5.3E-10 66.4 10.4 193 134-340 3-198 (281)
159 3ro3_A PINS homolog, G-protein 98.1 1.6E-05 5.5E-10 59.4 9.6 134 172-305 10-157 (164)
160 3upv_A Heat shock protein STI1 98.1 6.8E-05 2.3E-09 53.8 12.5 97 171-270 4-100 (126)
161 4gcn_A Protein STI-1; structur 98.1 3.3E-05 1.1E-09 55.9 10.5 107 171-280 8-119 (127)
162 3dss_A Geranylgeranyl transfer 98.1 0.0033 1.1E-07 53.2 24.1 222 112-343 41-306 (331)
163 2dba_A Smooth muscle cell asso 98.1 0.00023 8E-09 52.2 15.4 98 170-271 27-128 (148)
164 4f3v_A ESX-1 secretion system 98.1 0.00013 4.5E-09 60.2 14.9 191 75-276 18-240 (282)
165 2fbn_A 70 kDa peptidylprolyl i 98.1 8.6E-05 2.9E-09 58.1 13.5 128 173-304 40-184 (198)
166 2fbn_A 70 kDa peptidylprolyl i 98.1 8.5E-05 2.9E-09 58.1 13.3 159 177-338 10-183 (198)
167 2vgx_A Chaperone SYCD; alterna 98.1 6.3E-05 2.1E-09 56.0 11.9 97 171-270 21-117 (148)
168 2xev_A YBGF; tetratricopeptide 98.1 6.5E-05 2.2E-09 54.0 11.7 94 210-307 6-106 (129)
169 1hxi_A PEX5, peroxisome target 98.1 5.1E-05 1.7E-09 54.4 10.8 91 211-305 22-113 (121)
170 4b4t_Q 26S proteasome regulato 98.1 8.9E-05 3E-09 65.5 14.3 162 180-341 13-204 (434)
171 3q49_B STIP1 homology and U bo 98.0 0.00013 4.4E-09 53.0 12.8 99 169-270 7-105 (137)
172 2xcb_A PCRH, regulatory protei 98.0 5.9E-05 2E-09 55.6 10.9 95 173-270 20-114 (142)
173 3sz7_A HSC70 cochaperone (SGT) 98.0 0.00015 5.1E-09 54.8 13.1 100 169-271 9-108 (164)
174 1wao_1 Serine/threonine protei 97.9 0.00014 4.9E-09 65.4 13.5 117 180-301 15-134 (477)
175 3k9i_A BH0479 protein; putativ 97.9 1.8E-05 6.1E-10 56.3 5.9 105 218-324 2-109 (117)
176 1wao_1 Serine/threonine protei 97.9 5.2E-05 1.8E-09 68.3 9.7 121 211-336 11-134 (477)
177 2xev_A YBGF; tetratricopeptide 97.8 0.00048 1.6E-08 49.3 12.7 91 177-271 8-105 (129)
178 3n71_A Histone lysine methyltr 97.8 0.00014 4.8E-09 65.4 11.3 125 216-340 319-463 (490)
179 1kt0_A FKBP51, 51 kDa FK506-bi 97.8 0.00041 1.4E-08 62.0 14.3 131 171-305 268-414 (457)
180 3rkv_A Putative peptidylprolyl 97.8 0.0002 6.8E-09 53.9 10.6 101 206-307 11-127 (162)
181 3n71_A Histone lysine methyltr 97.8 0.0002 6.9E-09 64.4 12.1 127 180-306 318-464 (490)
182 1hxi_A PEX5, peroxisome target 97.8 0.00033 1.1E-08 50.0 11.0 91 177-270 23-113 (121)
183 3k9i_A BH0479 protein; putativ 97.8 6.4E-05 2.2E-09 53.3 6.8 60 173-233 29-88 (117)
184 2hr2_A Hypothetical protein; a 97.8 0.00026 9.1E-09 52.8 10.0 64 279-342 59-132 (159)
185 1kt0_A FKBP51, 51 kDa FK506-bi 97.7 0.00065 2.2E-08 60.8 13.7 126 206-333 268-406 (457)
186 2if4_A ATFKBP42; FKBP-like, al 97.7 0.00023 8E-09 60.9 10.4 148 171-341 179-328 (338)
187 1ihg_A Cyclophilin 40; ppiase 97.7 0.00051 1.7E-08 59.6 12.5 27 173-199 225-251 (370)
188 3q7a_A Farnesyltransferase alp 97.7 0.019 6.4E-07 48.9 21.5 190 112-306 100-331 (349)
189 1ihg_A Cyclophilin 40; ppiase 97.7 0.00067 2.3E-08 58.8 12.8 124 207-333 224-362 (370)
190 3rkv_A Putative peptidylprolyl 97.6 0.0017 5.9E-08 48.6 12.8 103 172-278 12-131 (162)
191 1klx_A Cysteine rich protein B 97.6 0.0038 1.3E-07 45.5 14.0 110 186-307 10-127 (138)
192 2uy1_A Cleavage stimulation fa 97.5 0.0051 1.7E-07 55.5 17.0 186 99-305 213-412 (493)
193 1klx_A Cysteine rich protein B 97.5 0.0039 1.3E-07 45.5 13.3 110 220-341 9-126 (138)
194 2l6j_A TPR repeat-containing p 97.5 0.00012 4E-09 51.0 4.5 62 207-270 5-66 (111)
195 3dss_A Geranylgeranyl transfer 97.4 0.043 1.5E-06 46.4 21.2 191 146-343 40-269 (331)
196 2l6j_A TPR repeat-containing p 97.4 0.00025 8.5E-09 49.2 5.2 95 240-337 2-103 (111)
197 2if4_A ATFKBP42; FKBP-like, al 97.3 0.00064 2.2E-08 58.2 8.5 116 206-342 179-294 (338)
198 2kat_A Uncharacterized protein 97.3 0.0026 8.9E-08 44.5 9.5 98 223-323 2-100 (115)
199 2hr2_A Hypothetical protein; a 97.2 0.0047 1.6E-07 46.1 11.0 96 174-269 14-129 (159)
200 2kat_A Uncharacterized protein 97.2 0.0031 1.1E-07 44.1 9.3 79 189-270 3-81 (115)
201 1na3_A Designed protein CTPR2; 97.1 0.007 2.4E-07 39.8 10.3 78 243-322 10-87 (91)
202 3ma5_A Tetratricopeptide repea 97.1 0.0023 7.9E-08 43.6 7.8 87 240-327 5-92 (100)
203 1dce_A Protein (RAB geranylger 97.1 0.04 1.4E-06 50.5 18.2 36 291-327 206-241 (567)
204 1dce_A Protein (RAB geranylger 97.0 0.039 1.3E-06 50.6 17.0 118 222-343 89-223 (567)
205 1na3_A Designed protein CTPR2; 96.9 0.011 3.7E-07 38.9 9.6 61 208-270 11-71 (91)
206 3ma5_A Tetratricopeptide repea 96.9 0.0066 2.3E-07 41.3 8.4 64 205-270 6-69 (100)
207 3qwp_A SET and MYND domain-con 96.8 0.0059 2E-07 53.9 9.3 90 251-340 296-399 (429)
208 3qww_A SET and MYND domain-con 96.8 0.0047 1.6E-07 54.6 8.6 86 255-340 311-410 (433)
209 1zu2_A Mitochondrial import re 96.7 0.0077 2.6E-07 44.8 8.1 87 255-343 15-122 (158)
210 3qww_A SET and MYND domain-con 96.7 0.0071 2.4E-07 53.4 9.3 88 218-305 310-410 (433)
211 3ly7_A Transcriptional activat 96.7 0.037 1.3E-06 47.2 12.9 74 239-316 274-347 (372)
212 1pc2_A Mitochondria fission pr 96.6 0.024 8.4E-07 41.7 9.8 82 221-306 13-100 (152)
213 3qwp_A SET and MYND domain-con 96.6 0.017 5.7E-07 51.0 10.6 61 207-267 330-396 (429)
214 1wy6_A Hypothetical protein ST 96.5 0.12 4.3E-06 36.8 12.6 136 151-309 22-157 (172)
215 3ly7_A Transcriptional activat 96.4 0.05 1.7E-06 46.4 12.2 68 274-343 274-341 (372)
216 3mkq_A Coatomer beta'-subunit; 96.4 0.13 4.4E-06 49.2 16.7 179 112-331 611-802 (814)
217 1zu2_A Mitochondrial import re 96.4 0.011 3.6E-07 44.0 6.9 58 223-284 63-131 (158)
218 3mkq_A Coatomer beta'-subunit; 96.3 0.024 8.2E-07 54.2 11.2 151 150-340 613-764 (814)
219 2kc7_A BFR218_protein; tetratr 96.3 0.017 5.7E-07 38.8 7.2 58 248-307 6-65 (99)
220 2v5f_A Prolyl 4-hydroxylase su 96.2 0.032 1.1E-06 38.2 8.5 66 241-306 4-75 (104)
221 2kc7_A BFR218_protein; tetratr 96.0 0.016 5.6E-07 38.9 6.2 81 212-304 6-88 (99)
222 3bee_A Putative YFRE protein; 95.7 0.075 2.6E-06 35.5 8.1 67 239-307 3-73 (93)
223 3mkq_B Coatomer subunit alpha; 95.4 0.38 1.3E-05 36.3 11.8 129 179-338 13-141 (177)
224 3mkq_B Coatomer subunit alpha; 95.4 0.54 1.8E-05 35.5 12.6 125 147-303 17-141 (177)
225 1nzn_A CGI-135 protein, fissio 95.2 0.2 6.9E-06 35.4 9.1 87 217-306 12-103 (126)
226 1pc2_A Mitochondria fission pr 95.0 0.5 1.7E-05 34.7 11.1 80 188-270 15-99 (152)
227 3u64_A Protein TP_0956; tetrat 95.0 0.93 3.2E-05 37.2 13.7 62 173-234 201-268 (301)
228 1wy6_A Hypothetical protein ST 94.8 0.72 2.5E-05 33.0 15.2 138 113-274 20-157 (172)
229 2v5f_A Prolyl 4-hydroxylase su 94.8 0.17 6E-06 34.4 8.1 62 209-270 8-74 (104)
230 1v54_E Cytochrome C oxidase po 94.2 0.65 2.2E-05 31.2 9.0 63 186-250 25-87 (109)
231 3bee_A Putative YFRE protein; 94.1 0.8 2.7E-05 30.4 10.1 47 222-270 25-71 (93)
232 4gns_B Protein CSD3, chitin bi 93.9 1.5 5.3E-05 41.3 14.4 124 210-338 252-397 (754)
233 2y69_E Cytochrome C oxidase su 92.8 1.2 4.2E-05 31.6 9.0 64 186-251 68-131 (152)
234 4h7y_A Dual specificity protei 92.5 2.3 7.8E-05 31.0 11.3 104 98-204 12-127 (161)
235 3u64_A Protein TP_0956; tetrat 92.4 0.35 1.2E-05 39.7 6.8 86 80-168 180-272 (301)
236 4h7y_A Dual specificity protei 92.0 2.7 9.2E-05 30.7 10.5 53 256-309 74-126 (161)
237 2ff4_A Probable regulatory pro 91.9 0.72 2.5E-05 39.9 8.7 67 211-279 176-247 (388)
238 1nzn_A CGI-135 protein, fissio 91.6 2.3 7.7E-05 30.0 9.4 81 187-270 17-102 (126)
239 4gns_B Protein CSD3, chitin bi 91.1 2.7 9.2E-05 39.7 12.1 129 100-233 249-398 (754)
240 2ff4_A Probable regulatory pro 90.5 1.4 4.8E-05 38.1 9.2 127 170-316 111-249 (388)
241 1v54_E Cytochrome C oxidase po 89.8 3.2 0.00011 27.8 8.8 61 222-284 26-86 (109)
242 4b4t_P 26S proteasome regulato 89.7 8.2 0.00028 34.0 13.6 48 151-198 31-83 (445)
243 2y69_E Cytochrome C oxidase su 88.2 5.2 0.00018 28.5 8.8 60 223-284 70-129 (152)
244 4ady_A RPN2, 26S proteasome re 88.2 20 0.00068 34.8 18.4 232 102-339 413-656 (963)
245 1wdy_A 2-5A-dependent ribonucl 87.9 4.2 0.00014 32.6 10.0 212 36-266 7-240 (285)
246 4fhn_B Nucleoporin NUP120; pro 87.8 8.9 0.0003 38.4 13.9 148 176-332 817-991 (1139)
247 4fhn_B Nucleoporin NUP120; pro 86.4 27 0.00092 35.0 16.4 169 170-341 841-1050(1139)
248 3eu9_A Huntingtin-interacting 85.9 3.7 0.00013 32.0 8.4 20 70-89 13-32 (240)
249 3o48_A Mitochondria fission 1 85.7 7.7 0.00026 27.5 9.3 67 238-306 36-107 (134)
250 1wdy_A 2-5A-dependent ribonucl 85.3 3.1 0.00011 33.5 7.8 242 68-336 7-274 (285)
251 1y8m_A FIS1; mitochondria, unk 82.8 11 0.00038 27.1 11.2 69 238-307 35-107 (144)
252 3ffl_A Anaphase-promoting comp 82.5 7.3 0.00025 28.9 7.8 70 200-269 12-90 (167)
253 2wpv_A GET4, UPF0363 protein Y 81.0 23 0.00077 29.4 14.9 163 152-334 13-190 (312)
254 3lpz_A GET4 (YOR164C homolog); 81.0 24 0.00081 29.6 14.2 159 152-331 12-186 (336)
255 4b4t_R RPN7, 26S proteasome re 79.9 22 0.00076 31.0 11.5 61 173-233 133-195 (429)
256 4b4t_P 26S proteasome regulato 78.6 34 0.0012 30.0 17.4 187 114-305 30-246 (445)
257 3esl_A Checkpoint serine/threo 77.7 22 0.00074 27.3 10.0 90 80-170 58-149 (202)
258 1zbp_A Hypothetical protein VP 74.9 11 0.00036 30.5 7.2 72 249-321 4-77 (273)
259 4b4t_R RPN7, 26S proteasome re 74.6 31 0.0011 30.1 10.9 118 116-234 110-236 (429)
260 2d2s_A Exocyst complex compone 73.8 31 0.0011 27.2 10.4 90 212-304 24-118 (235)
261 2nsz_A Programmed cell death p 73.4 21 0.0007 25.1 7.8 65 208-274 9-75 (129)
262 2ion_A PDCD4, programmed cell 72.2 19 0.00065 26.2 7.5 66 208-275 11-78 (152)
263 3kea_A K1L; tropism, ANK repea 72.2 37 0.0013 27.4 11.3 186 68-279 33-225 (285)
264 3ffl_A Anaphase-promoting comp 71.9 17 0.00059 26.9 7.1 24 209-232 66-89 (167)
265 1k1a_A B-cell lymphoma 3-encod 71.1 11 0.00039 29.2 6.8 192 98-311 6-210 (241)
266 2nsz_A Programmed cell death p 71.1 24 0.00083 24.8 9.5 68 173-242 9-78 (129)
267 3o48_A Mitochondria fission 1 70.7 25 0.00087 24.9 8.2 46 154-199 61-106 (134)
268 3txn_A 26S proteasome regulato 70.5 51 0.0018 28.3 16.7 163 173-337 21-206 (394)
269 3kea_A K1L; tropism, ANK repea 69.7 42 0.0014 27.0 10.5 51 38-89 35-85 (285)
270 3hra_A Ankyrin repeat family p 69.4 11 0.00038 28.3 6.2 19 70-88 43-61 (201)
271 1zbp_A Hypothetical protein VP 67.5 48 0.0016 26.8 14.6 114 214-341 5-129 (273)
272 1k1a_A B-cell lymphoma 3-encod 67.4 20 0.0007 27.7 7.6 23 39-61 14-36 (241)
273 3txn_A 26S proteasome regulato 67.2 61 0.0021 27.9 19.4 24 174-197 142-165 (394)
274 2ion_A PDCD4, programmed cell 66.7 34 0.0012 24.8 9.5 68 173-242 11-80 (152)
275 3lvg_A Clathrin heavy chain 1; 66.4 0.012 4E-07 51.9 -12.3 136 171-331 54-189 (624)
276 4a1g_A Mitotic checkpoint seri 66.3 27 0.00093 25.4 7.1 51 154-204 83-134 (152)
277 3eu9_A Huntingtin-interacting 65.0 16 0.00056 28.1 6.5 201 110-338 16-233 (240)
278 4a1g_A Mitotic checkpoint seri 64.6 38 0.0013 24.6 10.0 87 80-170 49-135 (152)
279 3t8k_A Uncharacterized protein 64.4 35 0.0012 25.5 8.1 20 114-133 49-68 (186)
280 2d2s_A Exocyst complex compone 64.3 32 0.0011 27.2 7.9 90 177-270 24-119 (235)
281 3esl_A Checkpoint serine/threo 64.3 46 0.0016 25.5 8.7 56 219-275 92-148 (202)
282 3jxi_A Vanilloid receptor-rela 64.1 9 0.00031 30.3 4.9 53 37-89 8-72 (260)
283 2fu4_A Ferric uptake regulatio 63.8 24 0.00084 22.1 6.4 61 267-328 7-68 (83)
284 3e3v_A Regulatory protein RECX 63.7 44 0.0015 25.0 8.9 48 155-203 52-99 (177)
285 2rfa_A Transient receptor pote 63.4 40 0.0014 25.8 8.5 20 70-89 41-60 (232)
286 2fe3_A Peroxide operon regulat 63.0 30 0.001 24.8 7.0 61 267-328 12-72 (145)
287 3hra_A Ankyrin repeat family p 62.9 24 0.00081 26.4 6.9 13 112-124 14-26 (201)
288 3eiq_C Programmed cell death p 62.3 72 0.0025 27.0 14.1 70 245-315 220-291 (358)
289 2wvi_A Mitotic checkpoint seri 61.1 28 0.00095 25.7 6.5 52 154-205 78-130 (164)
290 3b7b_A Euchromatic histone-lys 59.3 26 0.00088 27.0 6.7 22 284-305 214-235 (237)
291 2xig_A Ferric uptake regulatio 59.3 33 0.0011 24.7 6.7 61 267-328 17-77 (150)
292 3eiq_C Programmed cell death p 59.1 82 0.0028 26.7 13.2 29 33-61 56-84 (358)
293 2wvi_A Mitotic checkpoint seri 58.8 52 0.0018 24.3 9.9 89 79-171 43-131 (164)
294 2zu6_B Programmed cell death p 58.3 39 0.0013 27.9 7.7 59 280-339 169-229 (307)
295 4fke_A Aminopeptidase N; zinc 58.1 1.4E+02 0.0048 29.0 17.1 144 175-326 690-845 (909)
296 1mzb_A Ferric uptake regulatio 57.7 33 0.0011 24.2 6.4 59 268-327 9-68 (136)
297 4aez_C MAD3, mitotic spindle c 57.5 66 0.0023 25.1 8.9 86 80-169 98-183 (223)
298 3l6a_A Eukaryotic translation 57.1 90 0.0031 26.5 12.4 67 102-174 15-86 (364)
299 3lvg_A Clathrin heavy chain 1; 56.9 0.98 3.3E-05 40.1 -2.2 188 81-290 69-276 (624)
300 2w57_A Ferric uptake regulatio 55.6 37 0.0013 24.5 6.5 61 267-328 7-68 (150)
301 1n11_A Ankyrin; clathrin, BAND 54.8 65 0.0022 27.6 9.2 20 70-89 84-103 (437)
302 3eyy_A Putative iron uptake re 54.5 30 0.001 24.8 5.8 59 267-327 9-67 (145)
303 4g8k_A 2-5A-dependent ribonucl 54.2 87 0.003 25.7 9.5 102 195-312 223-329 (337)
304 2fu4_A Ferric uptake regulatio 53.9 30 0.001 21.7 5.2 32 154-185 35-66 (83)
305 1qsa_A Protein (soluble lytic 53.0 1.4E+02 0.0048 27.5 18.3 116 185-304 228-346 (618)
306 3aji_A 26S proteasome non-ATPa 52.5 41 0.0014 25.7 6.9 13 113-125 16-28 (231)
307 2uwj_G Type III export protein 52.5 50 0.0017 22.1 6.4 85 220-316 20-106 (115)
308 3l6a_A Eukaryotic translation 52.3 87 0.003 26.6 9.1 79 172-255 13-96 (364)
309 3ljn_A Hypothetical protein; a 52.2 65 0.0022 26.8 8.5 14 183-196 93-106 (364)
310 2fe3_A Peroxide operon regulat 51.7 63 0.0021 23.0 8.1 62 124-187 11-72 (145)
311 2p58_C Putative type III secre 51.3 52 0.0018 22.0 7.3 85 220-316 21-107 (116)
312 4aez_C MAD3, mitotic spindle c 50.6 49 0.0017 25.8 6.6 70 131-204 113-183 (223)
313 1qsa_A Protein (soluble lytic 50.5 1.5E+02 0.0053 27.2 22.3 117 221-340 229-347 (618)
314 2xig_A Ferric uptake regulatio 49.8 69 0.0024 23.0 7.5 63 123-187 15-77 (150)
315 4ets_A Ferric uptake regulatio 49.0 55 0.0019 24.0 6.5 59 268-327 24-84 (162)
316 3rjo_A Endoplasmic reticulum a 48.3 1.3E+02 0.0045 25.9 18.5 32 241-272 266-297 (419)
317 2wpv_A GET4, UPF0363 protein Y 48.2 1.2E+02 0.004 25.1 16.7 138 112-269 65-215 (312)
318 3c1d_A Protein ORAA, regulator 47.5 79 0.0027 23.0 9.6 53 186-241 45-97 (159)
319 1mzb_A Ferric uptake regulatio 47.0 70 0.0024 22.5 6.7 62 125-187 8-69 (136)
320 1wty_A Hypothetical protein TT 46.8 67 0.0023 22.0 6.4 110 221-339 3-116 (119)
321 4g8k_A 2-5A-dependent ribonucl 46.8 1.2E+02 0.004 24.8 13.2 266 35-336 26-322 (337)
322 3eyy_A Putative iron uptake re 46.6 65 0.0022 23.0 6.5 60 124-186 8-67 (145)
323 3t8k_A Uncharacterized protein 46.5 87 0.003 23.2 8.4 27 180-206 44-70 (186)
324 2r9g_A AAA ATPase, central reg 46.5 96 0.0033 23.7 10.2 35 150-185 28-62 (204)
325 2uwj_G Type III export protein 45.9 65 0.0022 21.6 7.0 48 180-233 48-95 (115)
326 3d5l_A Regulatory protein RECX 45.6 1E+02 0.0036 23.9 8.5 49 154-203 94-142 (221)
327 3bge_A Predicted ATPase; struc 45.5 99 0.0034 23.6 8.9 94 141-234 10-110 (201)
328 1ug3_A EIF4GI, eukaryotic prot 45.2 54 0.0018 27.5 6.7 24 279-302 143-166 (339)
329 1bd8_A P19INK4D CDK4/6 inhibit 45.2 36 0.0012 24.1 5.1 52 37-89 5-58 (156)
330 2w57_A Ferric uptake regulatio 45.1 79 0.0027 22.7 6.8 63 124-187 6-68 (150)
331 1bd8_A P19INK4D CDK4/6 inhibit 45.0 23 0.00078 25.1 3.9 13 323-335 141-153 (156)
332 2p58_C Putative type III secre 44.7 69 0.0023 21.5 7.3 12 182-193 51-62 (116)
333 2ijq_A Hypothetical protein; s 41.9 1E+02 0.0034 22.6 7.9 51 289-339 44-102 (161)
334 1y8m_A FIS1; mitochondria, unk 41.5 96 0.0033 22.3 11.8 22 249-270 84-105 (144)
335 3ljn_A Hypothetical protein; a 41.0 1.3E+02 0.0044 25.0 8.6 45 253-302 219-266 (364)
336 1n11_A Ankyrin; clathrin, BAND 40.6 1.2E+02 0.0041 25.9 8.6 79 37-123 17-100 (437)
337 4ets_A Ferric uptake regulatio 39.9 1.1E+02 0.0037 22.4 7.2 70 116-187 13-85 (162)
338 1ug3_A EIF4GI, eukaryotic prot 39.0 46 0.0016 27.9 5.3 67 173-241 13-80 (339)
339 3mv2_A Coatomer subunit alpha; 38.4 1.7E+02 0.0059 24.3 9.7 69 256-324 184-255 (325)
340 1oai_A Nuclear RNA export fact 38.2 27 0.00093 20.7 2.7 15 186-200 35-49 (59)
341 2b7e_A PRE-mRNA processing pro 37.7 30 0.001 20.5 2.8 33 116-148 2-35 (59)
342 3ygs_P Procaspase 9; apoptosis 37.7 85 0.0029 20.6 6.2 13 187-199 53-65 (97)
343 4ady_A RPN2, 26S proteasome re 37.6 3E+02 0.01 26.9 18.8 270 41-326 421-720 (963)
344 3aji_A 26S proteasome non-ATPa 37.5 1.2E+02 0.0041 22.9 7.4 51 38-88 10-62 (231)
345 3jxi_A Vanilloid receptor-rela 37.5 69 0.0024 25.0 6.1 57 139-197 7-72 (260)
346 1wgl_A TOLL-interacting protei 37.5 61 0.0021 19.1 4.1 23 112-134 35-57 (59)
347 3ctd_A Putative ATPase, AAA fa 36.3 1.5E+02 0.005 22.9 9.5 93 141-234 38-137 (213)
348 2qx5_A Nucleoporin NIC96; mRNA 35.9 2.7E+02 0.0093 25.8 13.4 81 176-268 299-382 (661)
349 2o03_A Probable zinc uptake re 35.8 52 0.0018 23.0 4.4 45 283-327 16-60 (131)
350 2rfa_A Transient receptor pote 35.4 1.4E+02 0.0049 22.5 10.5 24 285-308 159-182 (232)
351 3mwm_A ZUR, putative metal upt 34.1 48 0.0016 23.5 4.1 46 282-327 18-63 (139)
352 3bu8_A Telomeric repeat-bindin 33.5 1.7E+02 0.0057 22.7 7.6 49 222-270 88-142 (235)
353 2pnn_A Transient receptor pote 33.0 73 0.0025 25.1 5.5 62 98-161 10-79 (273)
354 2zu6_B Programmed cell death p 32.7 2.1E+02 0.0071 23.6 14.4 67 209-277 169-237 (307)
355 2etb_A Transient receptor pote 32.6 95 0.0033 24.1 6.1 18 284-301 140-157 (256)
356 3lxu_X Tripeptidyl-peptidase 2 32.6 3.9E+02 0.013 27.3 11.1 79 258-340 1265-1344(1354)
357 2yru_A Steroid receptor RNA ac 32.5 79 0.0027 21.8 4.7 44 263-306 47-90 (118)
358 3e3v_A Regulatory protein RECX 32.2 1.5E+02 0.0053 21.9 10.0 53 187-241 49-101 (177)
359 2f6m_A Suppressor protein STP2 30.8 91 0.0031 18.8 4.7 42 245-287 5-46 (65)
360 3mkr_B Coatomer subunit alpha; 30.3 2.3E+02 0.008 23.4 8.0 50 259-308 178-229 (320)
361 2keb_A DNA polymerase subunit 29.4 1.3E+02 0.0043 20.0 5.8 27 263-289 30-56 (101)
362 2rg8_A Programmed cell death p 29.0 84 0.0029 23.1 4.7 60 208-270 12-73 (165)
363 3twr_A Tankyrase-2; ankyrin re 29.0 1.5E+02 0.0052 20.8 6.6 9 180-188 48-56 (165)
364 1gp8_A Protein (scaffolding pr 28.6 71 0.0024 16.9 3.6 30 312-341 10-39 (40)
365 2cos_A Serine/threonine protei 28.5 55 0.0019 18.9 2.7 34 300-338 13-48 (54)
366 2f8y_A Notch homolog 1, transl 27.7 1.9E+02 0.0065 21.5 7.0 38 110-153 32-72 (223)
367 4b93_B Ankyrin repeat domain-c 27.4 1.7E+02 0.0057 23.2 6.8 184 97-312 7-213 (269)
368 2yru_A Steroid receptor RNA ac 27.1 1E+02 0.0035 21.2 4.5 43 227-270 47-89 (118)
369 2pnn_A Transient receptor pote 26.8 1.5E+02 0.0053 23.1 6.5 62 134-197 10-80 (273)
370 2dod_A Transcription elongatio 26.6 89 0.0031 19.9 3.8 30 222-252 16-45 (82)
371 3lpz_A GET4 (YOR164C homolog); 26.5 2.8E+02 0.0097 23.1 19.4 131 119-269 78-214 (336)
372 1a1w_A FADD protein; apoptosis 26.4 57 0.002 21.3 3.0 74 15-88 4-82 (91)
373 3utm_A Tankyrase-1; tankyrase, 26.2 2.6E+02 0.0088 22.6 8.0 76 192-277 228-308 (351)
374 2crb_A Nuclear receptor bindin 26.1 1.1E+02 0.0039 19.9 4.2 21 281-301 19-39 (97)
375 2rg8_A Programmed cell death p 26.0 89 0.003 23.0 4.4 71 173-247 12-84 (165)
376 3ygs_P Procaspase 9; apoptosis 25.7 1.1E+02 0.0039 20.0 4.5 38 291-332 51-88 (97)
377 3no6_A Transcriptional activat 25.7 2.5E+02 0.0084 22.2 7.6 24 168-191 126-150 (248)
378 4gpm_A Engineered protein OR26 25.4 1.9E+02 0.0066 20.8 7.9 46 40-89 10-60 (169)
379 3b7b_A Euchromatic histone-lys 25.0 1.6E+02 0.0055 22.3 6.1 53 284-340 181-235 (237)
380 3utm_A Tankyrase-1; tankyrase, 24.8 2.7E+02 0.0094 22.4 12.0 122 35-170 25-151 (351)
381 2f8y_A Notch homolog 1, transl 24.3 1.6E+02 0.0055 22.0 6.0 177 137-336 25-212 (223)
382 3pvs_A Replication-associated 24.1 3.6E+02 0.012 23.5 13.4 152 115-270 166-358 (447)
383 2o03_A Probable zinc uptake re 24.0 91 0.0031 21.7 4.0 32 154-185 28-59 (131)
384 2etb_A Transient receptor pote 23.9 1.6E+02 0.0053 22.8 5.9 52 110-162 9-69 (256)
385 3qye_A TBC1 domain family memb 23.8 3E+02 0.01 22.6 10.0 91 192-286 209-303 (331)
386 3mwm_A ZUR, putative metal upt 23.5 1.5E+02 0.005 20.9 5.1 45 211-256 18-62 (139)
387 3r88_A Anthranilate phosphorib 23.1 3.5E+02 0.012 23.0 8.3 66 205-272 22-89 (377)
388 3ltm_A Alpha-REP4; protein eng 22.0 2.4E+02 0.0084 20.8 16.7 109 204-325 93-201 (211)
389 3i5p_A Nucleoporin NUP170; hel 22.0 4E+02 0.014 23.9 8.5 43 152-197 51-93 (525)
390 4gq2_M Nucleoporin NUP120; bet 22.0 4.5E+02 0.016 25.6 9.6 108 212-326 816-950 (950)
391 2r9g_A AAA ATPase, central reg 21.7 2.7E+02 0.0093 21.2 11.3 37 218-256 26-62 (204)
392 4b4t_S RPN3, 26S proteasome re 21.3 4.5E+02 0.015 23.6 10.4 64 206-270 231-298 (523)
393 3m6y_A 4-hydroxy-2-oxoglutarat 21.0 79 0.0027 25.0 3.2 29 313-341 242-270 (275)
394 2p22_A Suppressor protein STP2 20.8 1.8E+02 0.006 21.7 5.0 50 240-290 109-158 (174)
395 4fn6_A Thiaminase-2, thiaminas 20.8 2.9E+02 0.01 21.3 9.3 90 167-258 106-207 (229)
396 2qfz_A TBC1 domain family memb 20.6 2.3E+02 0.008 23.5 6.5 76 192-268 230-312 (345)
397 3qye_A TBC1 domain family memb 20.5 3.6E+02 0.012 22.1 11.0 96 227-326 209-308 (331)
398 3rjo_A Endoplasmic reticulum a 20.0 4.1E+02 0.014 22.7 18.0 141 103-255 201-353 (419)
No 1
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=4e-37 Score=278.64 Aligned_cols=188 Identities=15% Similarity=0.061 Sum_probs=107.7
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccC--------chhHHHHHHHHHHhcCCccCH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC--------QSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~--------~~~~a~~~~~~m~~~g~~~~~ 171 (343)
..++.+|+ .|++.|++++|+++|++|.+.|++||..|||+||.+|+..+. .+++|.++|++|.+.|+.||.
T Consensus 27 ~~l~~~id-~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 27 ALLKQKLD-MCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHH-HTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHH-HHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 34555554 555666666666666666666666666666666665544321 134455555555555555555
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
.|||+||.+|++.|++++|.++|++|.+.|+.||..|||++|.+|++.|++++|.++|++|.+ .|+.||..||++||.+
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~G~~Pd~~ty~~Li~~ 184 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE-SEVVPEEPELAALLKV 184 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh-cCCCCCHHHHHHHHHH
Confidence 555555555555555555555555555555555555555555555555555555555555554 2555555555555555
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 289 (343)
|++.|++++|.+++++|.+.|+.|+..||+.++..|+.
T Consensus 185 ~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 185 SMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred HhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 55555555555555555555555555555555555554
No 2
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.8e-36 Score=273.09 Aligned_cols=207 Identities=11% Similarity=0.045 Sum_probs=180.4
Q ss_pred HHHHHHHHHHHhcCCCccH-HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc---------
Q 046547 117 PLALAILQRTLRSGCVPVP-QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ--------- 186 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~--------- 186 (343)
..+..+.+++++.+..+.+ ..++.+|.+||+.| ++++|.++|++|.+.|++||..|||+||.+|++.+.
T Consensus 7 s~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G-~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~ 85 (501)
T 4g26_A 7 SPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKG-DVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG 85 (501)
T ss_dssp -----------------CHHHHHHHHHHHTTTSC-CHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHH
T ss_pred chHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcch
Confidence 4556667778877776554 35788899988876 699999999999999999999999999999987654
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
++.|.++|++|.+.|+.||..|||+||.+|++.|++++|.++|++|.+ .|+.||..|||+||.+|++.|++++|.++|+
T Consensus 86 l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~-~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~ 164 (501)
T 4g26_A 86 LSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKA-FGIQPRLRSYGPALFGFCRKGDADKAYEVDA 164 (501)
T ss_dssp HHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH-TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-cCCCCccceehHHHHHHHHCCCHHHHHHHHH
Confidence 789999999999999999999999999999999999999999999998 5999999999999999999999999999999
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 325 (343)
+|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|..|+..||+.++..|+..
T Consensus 165 ~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 165 HMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999998864
No 3
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=1.9e-25 Score=208.15 Aligned_cols=304 Identities=7% Similarity=-0.105 Sum_probs=196.3
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH-h--------------------------------------
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF-L-------------------------------------- 70 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~-------------------------------------- 70 (343)
+..+|+.++..+.+.|++++|.++|+++...+ |+.... .
T Consensus 199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 276 (597)
T 2xpi_A 199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYM 276 (597)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHH
Confidence 57889999999999999999999999998754 332211 0
Q ss_pred hhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCC-------------------
Q 046547 71 SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGC------------------- 131 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~------------------- 131 (343)
.....+.+.+.++++.+.+.++....++..+|+.++. .+.+.|++++|.++|+++.+.+.
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 355 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD-TLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEK 355 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH-HHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCH
Confidence 0122222334444444444443333467888999886 77788999999999999876542
Q ss_pred --------------CccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHh
Q 046547 132 --------------VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 132 --------------~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
+.+..+++.+...|++.| ++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++
T Consensus 356 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 433 (597)
T 2xpi_A 356 NKLYLISNDLVDRHPEKAVTWLAVGIYYLCVN-KISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTA 433 (597)
T ss_dssp HHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCcccHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 123445555555555554 4666666666665432 223556666666666666666666666666
Q ss_pred hhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CC
Q 046547 198 SSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK----GC 273 (343)
Q Consensus 198 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~ 273 (343)
.+.+ +.+..+|+.+..+|.+.|++++|.++|+++.+ ..+.+..+|+.++..|.+.|++++|.++|+++.+. +.
T Consensus 434 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 510 (597)
T 2xpi_A 434 ARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYA--LFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS 510 (597)
T ss_dssp HHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc
Confidence 6543 23556666666666666666666666666664 22335666777777777777777777777766654 55
Q ss_pred CCc--hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 274 PIG--FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 274 ~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.|+ ..+|..+..+|.+.|++++|.+.|+++.+.+ +.+..+|..+..+|.+.|++++|.+.|+++.++.
T Consensus 511 ~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~ 580 (597)
T 2xpi_A 511 NEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAIS 580 (597)
T ss_dssp CSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred chhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 665 4566777777777777777777777766654 3356667777777777777777777777766654
No 4
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.95 E-value=8.5e-25 Score=203.73 Aligned_cols=204 Identities=7% Similarity=-0.096 Sum_probs=97.7
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC---------------------------------ccCHhhHHHHHH
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY---------------------------------HPDCGTCNYLVS 179 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~---------------------------------~~~~~~~~~ll~ 179 (343)
++..+++.++..+++.| ++++|.++|+++.+.+. +.+..+|+.+..
T Consensus 303 ~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 381 (597)
T 2xpi_A 303 KSSDLLLCKADTLFVRS-RFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGI 381 (597)
T ss_dssp GCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 44555556666655554 46666666666654321 112333344444
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
.|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.. ..+.+..+|+.++.+|.+.|+++
T Consensus 382 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~ 458 (597)
T 2xpi_A 382 YYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAAR--LFQGTHLPYLFLGMQHMQLGNIL 458 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--TTTTCSHHHHHHHHHHHHHTCHH
T ss_pred HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHcCCHH
Confidence 4444444444444444443321 11233444444444444444444444444442 22234444455555555555555
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCCC--HHHHHHHHHHHhccCChhHHHH
Q 046547 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER----GFIPY--IKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+|.++|+++.+.. +.+..+|+.+...|.+.|++++|.++|+++.+. +..|+ ..+|..+..+|.+.|++++|.+
T Consensus 459 ~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~ 537 (597)
T 2xpi_A 459 LANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAID 537 (597)
T ss_dssp HHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHH
Confidence 5555555544422 123445555555555555555555555555443 44444 4455555555555555555555
Q ss_pred HHHHHHhh
Q 046547 334 VRQRFAEL 341 (343)
Q Consensus 334 ~~~~m~~~ 341 (343)
+++++.++
T Consensus 538 ~~~~~~~~ 545 (597)
T 2xpi_A 538 ALNQGLLL 545 (597)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 55555443
No 5
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.90 E-value=4e-20 Score=163.08 Aligned_cols=302 Identities=10% Similarity=-0.041 Sum_probs=237.9
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChH-HH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPF-SF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDY 104 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 104 (343)
.+...|..+...+.+.|++++|.+.|+++... .|+.. ++ ...+...|+.+.+.+.++......| +......
T Consensus 65 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~ 139 (388)
T 1w3b_A 65 LLAEAYSNLGNVYKERGQLQEAIEHYRHALRL--KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP---DLYCVRS 139 (388)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT---TCTHHHH
T ss_pred CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CcHHHHH
Confidence 46778888888999999999999999888764 34433 33 4566677887777777777665443 4333333
Q ss_pred HHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc
Q 046547 105 LLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI 184 (343)
Q Consensus 105 li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~ 184 (343)
.+..++...|++++|.+.|+++.+.. +-+..+|..+...+...+ ++++|...|+++.+.+ +.+...|..+...+...
T Consensus 140 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~ 216 (388)
T 1w3b_A 140 DLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQG-EIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEA 216 (388)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHc
Confidence 33346777899999999999988753 224566777777776665 6889999999988753 33467788888889999
Q ss_pred CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHH
Q 046547 185 DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM 264 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~ 264 (343)
|++++|...|++..+.. +.+..++..+..++...|++++|...|+++.+ --+.+..+|..+..++.+.|++++|.+.
T Consensus 217 ~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 293 (388)
T 1w3b_A 217 RIFDRAVAAYLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDC 293 (388)
T ss_dssp TCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 99999999998887653 23577889999999999999999999999985 3334567899999999999999999999
Q ss_pred HHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 265 IEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 265 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.. +.+..++..+...|.+.|++++|.+.|+++.++.|
T Consensus 294 ~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p 370 (388)
T 1w3b_A 294 YNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP 370 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT
T ss_pred HHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99998753 4567789999999999999999999999998753 34678899999999999999999999999987653
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.88 E-value=2.3e-19 Score=158.22 Aligned_cols=300 Identities=10% Similarity=-0.058 Sum_probs=243.4
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
+...+..+...+.+.|++++|...++...... +.+..++ ...+...|+.+.+.+.++......|. +...|..+.
T Consensus 32 ~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~ 108 (388)
T 1w3b_A 32 NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPD--FIDGYINLA 108 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcc--hHHHHHHHH
Confidence 45667777788888999999999998877643 3344444 45667788877777777776655442 355677777
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
. ++...|++++|.+.|+++.+.. |+.......+..++...+++++|.+.|+++.+.. +.+..+|..+...+...|+
T Consensus 109 ~-~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 184 (388)
T 1w3b_A 109 A-ALVAAGDMEGAVQAYVSALQYN--PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGE 184 (388)
T ss_dssp H-HHHHHSCSSHHHHHHHHHHHHC--TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred H-HHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 5 7778899999999999998854 7666555555544555567999999999998753 3356889999999999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
+++|...|+++.+.+ +.+...|..+...+...|++++|...+++.... -+.+..++..+..++.+.|++++|.+.|+
T Consensus 185 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 261 (388)
T 1w3b_A 185 IWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNLACVYYEQGLIDLAIDTYR 261 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999998754 235678889999999999999999999998852 23357889999999999999999999999
Q ss_pred HHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 267 FLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 267 ~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++.+. .| +..+|..+...+.+.|++++|.+.|+++.+.. +.+..++..+...+.+.|++++|.+.++++.+..
T Consensus 262 ~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 335 (388)
T 1w3b_A 262 RAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF 335 (388)
T ss_dssp HHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC
T ss_pred HHHhh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99884 34 46688999999999999999999999998764 5578899999999999999999999999987754
No 7
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.88 E-value=1.2e-22 Score=190.20 Aligned_cols=119 Identities=13% Similarity=0.028 Sum_probs=79.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhh---CCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSS---AECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
..|||+||++||+.|++++|.++|++|.+ .|+.||..|||+||++||+.|++++|.++|++|.++ |+.||..|||+
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~-G~~PDvvTYnt 205 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDA-GLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-TCCCCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCcHHHHHH
Confidence 34677777777777777777777766543 356677777777777777777777777777777663 77777777777
Q ss_pred HHHHHHhCcc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 248 VAAALRANRE-MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 248 li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
||.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~ 249 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA 249 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH
Confidence 7777777665 356667777777777777777777666554443
No 8
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.87 E-value=1.5e-19 Score=162.39 Aligned_cols=301 Identities=11% Similarity=-0.011 Sum_probs=241.5
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYL 105 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l 105 (343)
.+...+..+...+.+.|++++|+++|+.+.... ..+..++ ...+...|+.+.+.+.++......|. +...+..+
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l 100 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD--FTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--CHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC--cHHHHHHH
Confidence 467789999999999999999999999988652 2334444 45566777877777777776655443 46677777
Q ss_pred HHHHhhcCCChHHHHHHHHHHHhcCCCccH----HHHHHHHH------------HHHhccCchhHHHHHHHHHHhcCCcc
Q 046547 106 LSYTLQSLHPLPLALAILQRTLRSGCVPVP----QIRLLLSS------------AWLERRCQSQSVADILLEMKSIGYHP 169 (343)
Q Consensus 106 i~~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~------------~~~~~~~~~~~a~~~~~~m~~~g~~~ 169 (343)
.. ++...|++++|...|+++.+.. |+. ..+..+.. .+...+ ++++|...++++.+.. +.
T Consensus 101 ~~-~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~-~~ 175 (450)
T 2y4t_A 101 GH-LLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSG-DYTAAIAFLDKILEVC-VW 175 (450)
T ss_dssp HH-HHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TT
T ss_pred HH-HHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CC
Confidence 75 7888899999999999998854 544 44444432 355655 6999999999998753 44
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH-
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV- 248 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l- 248 (343)
+..++..+...|.+.|++++|.++|+++.+.. +.+..++..+...|...|++++|+..|+++... .+.+...+..+
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 252 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYK 252 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCChHHHHHHHH
Confidence 67889999999999999999999999998753 346789999999999999999999999999853 22334445444
Q ss_pred -----------HHHHHhCccHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH
Q 046547 249 -----------AAALRANREMWKAVEMIEFLERKGCPIG-----FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312 (343)
Q Consensus 249 -----------i~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 312 (343)
...+.+.|++++|...|+++.+. .|+ ...|..+...+.+.|++++|...++++.+.. +.+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~ 329 (450)
T 2y4t_A 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNV 329 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccH
Confidence 78899999999999999999874 454 3478888999999999999999999988764 3468
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 313 KVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
..|..+..+|...|++++|.+.+++..++.+
T Consensus 330 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p 360 (450)
T 2y4t_A 330 NALKDRAEAYLIEEMYDEAIQDYETAQEHNE 360 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence 8999999999999999999999999987753
No 9
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.86 E-value=2.4e-22 Score=188.21 Aligned_cols=130 Identities=7% Similarity=-0.047 Sum_probs=116.5
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh--cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhH
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVL--NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~--~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
..-..|||+||++||+.|++++|.++|++|.+ +.|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 33467999999999999999999999988763 1289999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccH-hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 281 EVVVEGCLECREY-ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 281 ~~li~~~~~~g~~-~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
|+||.++++.|+. ++|.++|++|.+.|+.||..+|++++.+..+.+-++.+.
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vr 256 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH 256 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHH
Confidence 9999999999984 789999999999999999999999987766665444443
No 10
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=2.6e-16 Score=136.45 Aligned_cols=300 Identities=11% Similarity=-0.011 Sum_probs=232.3
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
+...+..+...+.+.|++++|.+.|++..... +.++..+ ...+...|+.+.+.+.++......|. +...+..+-
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~ 78 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD--FTAARLQRG 78 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--cchHHHHHH
Confidence 45677888889999999999999999988753 2223333 45556777777777777776655443 346666666
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCc---c-HHHHHHH------------HHHHHhccCchhHHHHHHHHHHhcCCccC
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVP---V-PQIRLLL------------SSAWLERRCQSQSVADILLEMKSIGYHPD 170 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p---~-~~~~~~l------------i~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 170 (343)
. ++...|++++|...|++..+.. | + ...+..+ ...+...+ ++++|.+.++++.+.. +.+
T Consensus 79 ~-~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~~~~~-~~~ 153 (359)
T 3ieg_A 79 H-LLLKQGKLDEAEDDFKKVLKSN--PSEQEEKEAESQLVKADEMQRLRSQALDAFDGA-DYTAAITFLDKILEVC-VWD 153 (359)
T ss_dssp H-HHHHHTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTC
T ss_pred H-HHHHcCChHHHHHHHHHHHhcC--CcccChHHHHHHHHHHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhC-CCc
Confidence 5 6778899999999999998854 5 3 3333333 24555554 7999999999998763 456
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHH----
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI---- 246 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~---- 246 (343)
...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|...++...+. .+.+...+.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~ 230 (359)
T 3ieg_A 154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQ 230 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHH
Confidence 7888999999999999999999999998764 446788999999999999999999999999863 222333332
Q ss_pred --------HHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-----hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHH
Q 046547 247 --------KVAAALRANREMWKAVEMIEFLERKGCPIGFQ-----GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIK 313 (343)
Q Consensus 247 --------~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 313 (343)
.+...+.+.|++++|...+++..+.. |+.. .+..+...+...|++++|.+.+++..+.. +.+..
T Consensus 231 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~ 307 (359)
T 3ieg_A 231 VKKLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVN 307 (359)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHH
Confidence 23667889999999999999998743 4422 34456778999999999999999998764 33788
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
++..+...|...|++++|.+.|++..++.|
T Consensus 308 ~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 308 ALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999988754
No 11
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.78 E-value=1.3e-16 Score=145.37 Aligned_cols=301 Identities=10% Similarity=-0.032 Sum_probs=234.1
Q ss_pred HHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 31 LRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 31 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
...+...-..+.+.|++++|++.|+++.... |+...+ ...+...|+.+.+.+.++...+..|. +...|..+..
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD--YSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC--CHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH--HHHHHHHHHH
Confidence 4556777788889999999999999988765 677666 45556677777777777776655442 4566777775
Q ss_pred HHhhcCCChHHHHHHHHHHHhcCCCc------------------------------------------------------
Q 046547 108 YTLQSLHPLPLALAILQRTLRSGCVP------------------------------------------------------ 133 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~~~~p------------------------------------------------------ 133 (343)
++...|++++|...|+++.+.+-..
T Consensus 82 -~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (514)
T 2gw1_A 82 -ANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPS 160 (514)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCC
T ss_pred -HHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCch
Confidence 7778899999999999987654210
Q ss_pred -----------------------c-HHHHHHHHHHHHh--ccCchhHHHHHHHHHHh-----cCC--------ccCHhhH
Q 046547 134 -----------------------V-PQIRLLLSSAWLE--RRCQSQSVADILLEMKS-----IGY--------HPDCGTC 174 (343)
Q Consensus 134 -----------------------~-~~~~~~li~~~~~--~~~~~~~a~~~~~~m~~-----~g~--------~~~~~~~ 174 (343)
+ ...+......+.. ..+++++|..+++++.+ ..- +.+..++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (514)
T 2gw1_A 161 VTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISL 240 (514)
T ss_dssp HHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHH
T ss_pred hHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHH
Confidence 0 1112222112222 13579999999999887 311 2345678
Q ss_pred HHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 175 NYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 175 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
..+...+...|++++|...|+++.+.. |+..++..+...+...|++++|...++.+.. ..+.+..++..+...+..
T Consensus 241 ~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 241 EHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALK--LDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHT--TCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhh--cCcCCHHHHHHHHHHHHH
Confidence 888899999999999999999998765 3388899999999999999999999999985 445567789999999999
Q ss_pred CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 046547 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 334 (343)
.|++++|...+++..+..- .+..++..+...|...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.
T Consensus 317 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~ 394 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQ 394 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 9999999999999987532 246688888999999999999999999988763 33567888999999999999999999
Q ss_pred HHHHHhhc
Q 046547 335 RQRFAELK 342 (343)
Q Consensus 335 ~~~m~~~~ 342 (343)
++++.+..
T Consensus 395 ~~~a~~~~ 402 (514)
T 2gw1_A 395 YDLAIELE 402 (514)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHhh
Confidence 99987653
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.78 E-value=6.9e-16 Score=138.44 Aligned_cols=295 Identities=8% Similarity=0.034 Sum_probs=227.3
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCCh---hhH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPK---IAY 102 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~---~~~ 102 (343)
.+...+..+...+.+.|++++|.+.|+++...+ ..+...+ ...+...|+.+.+.+.++......|. +. ..+
T Consensus 58 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~ 134 (450)
T 2y4t_A 58 DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS--ENEEKEAQ 134 (450)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC--HHHHHHHH
T ss_pred ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--ChhhHHHH
Confidence 467889999999999999999999999988764 2223333 45667788888888888887765442 23 444
Q ss_pred HHHHH-----------HHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH
Q 046547 103 DYLLS-----------YTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 103 ~~li~-----------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 171 (343)
..+.. ..+...|++++|+..|+++.+.. +.+...+..+...+...+ ++++|.++|+++.+.. +.+.
T Consensus 135 ~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~-~~~~ 211 (450)
T 2y4t_A 135 SQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEG-EPRKAISDLKAASKLK-NDNT 211 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CGGGGHHHHHHHHHHH-CSCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCH
Confidence 44422 13667799999999999998754 346677888888888876 6999999999998753 4567
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC-HhhHHHH------------HHHHhcCCChhHHHHHHHHHHhcCCC
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD-LESYSIV------------IGAMSTARKTNDAVEMMKEMVLNMGL 238 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~l------------l~~~~~~~~~~~a~~~~~~m~~~~~~ 238 (343)
.++..+...|...|++++|...|+++.+.. |+ ...+..+ ...+...|++++|...|+++...
T Consensus 212 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--- 286 (450)
T 2y4t_A 212 EAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--- 286 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---
Confidence 899999999999999999999999998653 43 4444444 78899999999999999999863
Q ss_pred CCc-----hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-CH
Q 046547 239 MPR-----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-YI 312 (343)
Q Consensus 239 ~p~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~ 312 (343)
.|+ ...|..+..++.+.|++++|...++++.+.. +.+..+|..+...|...|++++|.+.++++.+. .| +.
T Consensus 287 ~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~ 363 (450)
T 2y4t_A 287 EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEH--NENDQ 363 (450)
T ss_dssp CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--SSSCH
T ss_pred CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CcchH
Confidence 243 4578999999999999999999999988742 235788999999999999999999999999874 45 45
Q ss_pred HHHHHHHH------------HHhccC-----ChhHHHHHHHH
Q 046547 313 KVRQKVVE------------GLAGVG-----EWKLATVVRQR 337 (343)
Q Consensus 313 ~~~~~li~------------~~~~~g-----~~~~a~~~~~~ 337 (343)
..+..+.. .|...| +.+++.+.+++
T Consensus 364 ~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~ 405 (450)
T 2y4t_A 364 QIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRK 405 (450)
T ss_dssp HHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHH
Confidence 55555552 244444 55666776665
No 13
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.77 E-value=4.1e-16 Score=142.13 Aligned_cols=233 Identities=9% Similarity=-0.032 Sum_probs=163.2
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
.+..+.. ++...|++++|...|+++.+.. |+...+..+...+...+ ++++|...++...+.. +.+...+..+...
T Consensus 239 ~~~~~~~-~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 313 (514)
T 2gw1_A 239 SLEHTGI-FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRN-DSTEYYNYFDKALKLD-SNNSSVYYHRGQM 313 (514)
T ss_dssp HHHHHHH-HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSS-CCTTGGGHHHHHHTTC-TTCTHHHHHHHHH
T ss_pred HHHHHHH-HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCC-CHHHHHHHHHHHhhcC-cCCHHHHHHHHHH
Confidence 3444443 4556677777777777776644 33555555555555554 5777777777776542 3345667777777
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHH
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK 260 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~ 260 (343)
+...|++++|...|++..+... .+..++..+...+...|++++|...++.+... .+.+..++..+...+.+.|++++
T Consensus 314 ~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 390 (514)
T 2gw1_A 314 NFILQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDK 390 (514)
T ss_dssp HHHTTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHH
Confidence 7888888888888887776532 24567777788888888888888888887752 33356677888888888888888
Q ss_pred HHHHHHHHHHcCC-CCc----hhhHHHHHHHHHh---cccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 261 AVEMIEFLERKGC-PIG----FQGYEVVVEGCLE---CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 261 a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
|...++++.+..- .++ ..++..+...|.. .|++++|...++++.+.. +.+..++..+...|.+.|++++|.
T Consensus 391 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~ 469 (514)
T 2gw1_A 391 ALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAI 469 (514)
T ss_dssp HHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHH
Confidence 8888888765321 111 2377777888888 888888888888887654 335677788888888888888888
Q ss_pred HHHHHHHhhc
Q 046547 333 VVRQRFAELK 342 (343)
Q Consensus 333 ~~~~~m~~~~ 342 (343)
+.|++..++.
T Consensus 470 ~~~~~a~~~~ 479 (514)
T 2gw1_A 470 TLFEESADLA 479 (514)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhc
Confidence 8888887765
No 14
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=7.4e-16 Score=132.11 Aligned_cols=291 Identities=7% Similarity=-0.056 Sum_probs=219.5
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCC-CCChHH-HhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQ-NPNPFS-FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS 107 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~ 107 (343)
+...+......+...|++++|.++|+++....- .+.... +...+...++.+.+...++......|. +...|..+-.
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~l~~ 98 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--NPVSWFAVGC 98 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--STHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--CHHHHHHHHH
Confidence 445677888888888999999999999876532 222222 356667778877777777776655443 3455655554
Q ss_pred HHhhcCC-ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 108 YTLQSLH-PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 108 ~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
++...| ++++|...|++..+.. +.+...+..+...+...+ ++++|...+++..+.. +.+...+..+...|...|+
T Consensus 99 -~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~ 174 (330)
T 3hym_B 99 -YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVES-EHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNN 174 (330)
T ss_dssp -HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTC
T ss_pred -HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhh
Confidence 566778 8999999999998754 224566777777777765 6999999999988764 2345667778889999999
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC-------CCCCchhHHHHHHHHHHhCccHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNM-------GLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
+++|.+.|++..+.. +.+..++..+...+...|++++|...+++..... ..+.+..++..+..++...|+++
T Consensus 175 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 175 SKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 999999999988764 3457888899999999999999999999988521 01344578899999999999999
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH-hccCChh
Q 046547 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL-AGVGEWK 329 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~-~~~g~~~ 329 (343)
+|...+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+...+..+..++ ...|+.+
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence 9999999988753 2256688888899999999999999999887654 23677788888777 4556544
No 15
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.74 E-value=1.4e-15 Score=132.57 Aligned_cols=284 Identities=10% Similarity=-0.014 Sum_probs=195.3
Q ss_pred ccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHH-HHHHhcCCCCCCC--ChhhHHHHHHHHhhcCCChHHHH
Q 046547 44 AKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDE-MLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPLPLAL 120 (343)
Q Consensus 44 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~~a~ 120 (343)
.+.|+.+...|+.+...+ |+...+ .++.+.+.+ .++....+.+..| +...+..+-. .+...|++++|.
T Consensus 14 ~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~A~ 84 (368)
T 1fch_A 14 VDFWDKLQAELEEMAKRD--AEAHPW------LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGL-RRLQEGDLPNAV 84 (368)
T ss_dssp ----------------------------------------CHHHHCCCCCCSSCTTTTCSSHHHHHH-HHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHcCC--chhhHH------HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHH-HHHHCCCHHHHH
Confidence 345666666666655432 222212 223333333 4443334444444 3445655554 667789999999
Q ss_pred HHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC
Q 046547 121 AILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA 200 (343)
Q Consensus 121 ~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 200 (343)
..|+++.+.. +.+..++..+...+...+ ++++|.+.+++..+.. +.+..++..+...|...|++++|.+.|+++...
T Consensus 85 ~~~~~al~~~-p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 161 (368)
T 1fch_A 85 LLFEAAVQQD-PKHMEAWQYLGTTQAENE-QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRY 161 (368)
T ss_dssp HHHHHHHHSC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCc-CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 9999999864 335566777777777765 6999999999998764 446788999999999999999999999999876
Q ss_pred CCCCCHhhHHH---------------HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHH
Q 046547 201 ECVPDLESYSI---------------VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 201 ~~~~~~~~~~~---------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
... +...+.. .+..+...|++++|...++++.....-.++..++..+...+.+.|++++|...+
T Consensus 162 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 240 (368)
T 1fch_A 162 TPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCF 240 (368)
T ss_dssp STT-TGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 532 2222211 233444889999999999999864222225788999999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 266 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+++.+.. +.+..++..+...|...|++++|...|+++.+.. +.+...+..+...|.+.|++++|.+.|++..++.
T Consensus 241 ~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 315 (368)
T 1fch_A 241 TAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ 315 (368)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 9988753 2346788899999999999999999999988764 3467889999999999999999999999987754
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.73 E-value=6.7e-15 Score=126.14 Aligned_cols=264 Identities=9% Similarity=-0.093 Sum_probs=212.3
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcc
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 149 (343)
...+...|+.+.+.+.++......|. +...+..+.. ++...|++++|...++++.+.. +.+...+..+...+...+
T Consensus 29 a~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 104 (330)
T 3hym_B 29 AERHYYNCDFKMCYKLTSVVMEKDPF--HASCLPVHIG-TLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVG 104 (330)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT--CTTTHHHHHH-HHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCC--ChhhHHHHHH-HHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhh
Confidence 55666778888888887777655554 3345555554 5567799999999999998754 224556666666666765
Q ss_pred CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
+++++|.+.+++..+.. +.+...|..+...+...|++++|.+.|++..+... .+...+..+...+...|++++|...+
T Consensus 105 ~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~ 182 (330)
T 3hym_B 105 HKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSKLAERFF 182 (330)
T ss_dssp SCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 47999999999998754 33567889999999999999999999999987642 24566777999999999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC--------CCCchhhHHHHHHHHHhcccHhHHHHHHH
Q 046547 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG--------CPIGFQGYEVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--------~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (343)
++... ..+.+..++..+...+...|++++|...+++..+.. ...+..++..+...|...|++++|...++
T Consensus 183 ~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 260 (330)
T 3hym_B 183 SQALS--IAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHR 260 (330)
T ss_dssp HHHHT--TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHH--hCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99985 445567889999999999999999999999987631 13345688899999999999999999999
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 302 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+..+.. +.+...+..+...|.+.|++++|.+.+++..++.
T Consensus 261 ~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 300 (330)
T 3hym_B 261 QALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR 300 (330)
T ss_dssp HHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC
T ss_pred HHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC
Confidence 998764 3367788999999999999999999999887765
No 17
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.73 E-value=1.3e-15 Score=132.83 Aligned_cols=288 Identities=13% Similarity=0.036 Sum_probs=211.2
Q ss_pred HhCccCcchHHH-HHHHchhcCC-CC--ChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcC
Q 046547 41 AVDAKDYQQIPE-LLGSFEEACQ-NP--NPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113 (343)
Q Consensus 41 ~~~~~~~~~a~~-~~~~m~~~~~-~p--~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 113 (343)
+.-.|+++.|.+ .+++.....- .| +...+ ...+...|+.+.+...++......|. +...+..+.. ++...
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~l~~-~~~~~ 111 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK--HMEAWQYLGT-TQAEN 111 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT--CHHHHHHHHH-HHHHT
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC--CHHHHHHHHH-HHHHC
Confidence 345578888888 7775553211 22 12222 45666778888888887777655443 4566777765 77888
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHH---------------HH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNY---------------LV 178 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~---------------ll 178 (343)
|++++|...|+++.+.. +.+..++..+...+...+ ++++|.+.++++.+..... ...+.. .+
T Consensus 112 g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 188 (368)
T 1fch_A 112 EQELLAISALRRCLELK-PDNQTALMALAVSFTNES-LQRQACEILRDWLRYTPAY-AHLVTPAEEGAGGAGLGPSKRIL 188 (368)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTSTTT-GGGCC---------------CTT
T ss_pred cCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCcCc-HHHHHHHHHHhhhhcccHHHHHH
Confidence 99999999999998765 336677777877777765 6999999999998764222 222221 24
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
..+...|++++|...|+++.+.... ++..++..+...+...|++++|...+++.... .+.+..++..+...+...|+
T Consensus 189 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 189 GSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCC
Confidence 4445899999999999999875422 15788999999999999999999999999863 34467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC---C-------CHHHHHHHHHHHhccCC
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI---P-------YIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~---p-------~~~~~~~li~~~~~~g~ 327 (343)
+++|...++++.+.. +.+..++..+...|.+.|++++|...|++..+..-. | ...+|..+..+|...|+
T Consensus 267 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 345 (368)
T 1fch_A 267 SEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQ 345 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCC
Confidence 999999999998753 235678889999999999999999999998764211 1 26889999999999999
Q ss_pred hhHHHHHHHH
Q 046547 328 WKLATVVRQR 337 (343)
Q Consensus 328 ~~~a~~~~~~ 337 (343)
+++|..++++
T Consensus 346 ~~~A~~~~~~ 355 (368)
T 1fch_A 346 SDAYGAADAR 355 (368)
T ss_dssp GGGHHHHHTT
T ss_pred hHhHHHhHHH
Confidence 9999998764
No 18
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.72 E-value=4.5e-15 Score=125.50 Aligned_cols=271 Identities=15% Similarity=0.073 Sum_probs=179.4
Q ss_pred HHHhCccCcchHHHHHHHchhcCCCCChH--H---HhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcC
Q 046547 39 RAAVDAKDYQQIPELLGSFEEACQNPNPF--S---FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113 (343)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 113 (343)
+.....|+++.|+..++..... .|+.. . +...+...|+ .+.++..+.. ...|+..++..+.. ++...
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~---~~~al~~~~~--~~~~~~~a~~~la~-~~~~~ 78 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRK---YGVVLDEIKP--SSAPELQAVRMFAE-YLASH 78 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTC---HHHHHHHSCT--TSCHHHHHHHHHHH-HHHCS
T ss_pred HHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCC---HHHHHHHhcc--cCChhHHHHHHHHH-HHcCC
Confidence 3445578888888888765432 34332 1 1344445554 4555555543 23445566666665 67777
Q ss_pred CChHHHHHHHHHHHhcCCCccHHHHHHHH-HHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVPVPQIRLLLS-SAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
++.++|++.++++...+..|+...+..++ ..+... +++++|.+.+++ +.+...+..+...+.+.|++++|.+
T Consensus 79 ~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~-g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~ 151 (291)
T 3mkr_A 79 SRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYD-QNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARK 151 (291)
T ss_dssp TTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHT-TCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHC-CCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 88888888888888776667655544444 445555 468888888876 4567778888888888888888888
Q ss_pred HHHHhhhCCCCCCHhhH---HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 193 VLKGMSSAECVPDLESY---SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
.|+++.+.. |+.... ...+..+...|++++|..+|+++.+ ..+.+...++.+..++.+.|++++|...+++..
T Consensus 152 ~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~--~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al 227 (291)
T 3mkr_A 152 ELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMAD--KCSPTLLLLNGQAACHMAQGRWEAAEGVLQEAL 227 (291)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 888887753 443211 2233444556888888888888886 345677788888888888888888888888877
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhH-HHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHH
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYIL-AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 334 (343)
+.. +-+..++..++..+...|+.++ +.++++++.+.. |+... +.+...+.+.++++..-
T Consensus 228 ~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 228 DKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHHHHH
Confidence 642 2255677778888888888765 567888777653 43222 23445556666665543
No 19
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.72 E-value=1.3e-14 Score=132.93 Aligned_cols=301 Identities=12% Similarity=0.020 Sum_probs=222.9
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH---hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF---LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL 106 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li 106 (343)
....+......+.+.|++++|.+.|++..... +.++..+ ...+...|+.+.+.+.++......|. +...+..+.
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~la 100 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD--HSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--hHHHHHHHH
Confidence 34667888888999999999999999988753 2233343 45556777777777777776655443 455666666
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcC------------------------------------CCccHHH-------------
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSG------------------------------------CVPVPQI------------- 137 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~------------------------------------~~p~~~~------------- 137 (343)
. ++...|++++|...|+.+.... ..|+...
T Consensus 101 ~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 101 S-ANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp H-HHHHHTCHHHHHHHHHHHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred H-HHHHcCCHHHHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 4 6777899999999886432111 0111111
Q ss_pred ----------------HHHHHHHH--------HhccCchhHHHHHHHHHHhcCCccC--------HhhHHHHHHHHHccC
Q 046547 138 ----------------RLLLSSAW--------LERRCQSQSVADILLEMKSIGYHPD--------CGTCNYLVSSLCAID 185 (343)
Q Consensus 138 ----------------~~~li~~~--------~~~~~~~~~a~~~~~~m~~~g~~~~--------~~~~~~ll~~~~~~~ 185 (343)
+...+..+ ....+++++|..+++++.+. .|+ ..++..+...+...|
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~~~~~ 257 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFHFLKN 257 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHHHhcc
Confidence 11111111 11112577888899888764 333 235677778888999
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
++++|...|++..+.. |+..++..+...+...|++++|...+++.... .+.+..++..+...+...|++++|...+
T Consensus 258 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 258 NLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDL--NPEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp CHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhcc--CCCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999998854 66888999999999999999999999999863 3446788999999999999999999999
Q ss_pred HHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 266 EFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 266 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++..+.. +.+...+..+...|...|++++|.+.++++.+.. +.+...+..+...|...|++++|.+.+++..++.
T Consensus 334 ~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 408 (537)
T 3fp2_A 334 QKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE 408 (537)
T ss_dssp HHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence 9998753 2245688889999999999999999999998764 3356788899999999999999999999987653
No 20
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.71 E-value=1.8e-15 Score=132.07 Aligned_cols=236 Identities=11% Similarity=0.013 Sum_probs=186.9
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
...+..+-. .+...|++++|...|+++.+.. +.+..++..+...+...+ ++++|...|++..+.. +.+..++..+.
T Consensus 65 ~~~~~~~~~-~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~l~ 140 (365)
T 4eqf_A 65 WPGAFEEGL-KRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENE-NEQAAIVALQRCLELQ-PNNLKALMALA 140 (365)
T ss_dssp CTTHHHHHH-HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hhHHHHHHH-HHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC-CCCHHHHHHHH
Confidence 344655554 5667799999999999998764 335677888888877775 6999999999998763 34578899999
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCC-----------HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPD-----------LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
..|...|++++|...|+++.+.. |+ ..++..+...+...|++++|...++++.....-.++..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 99999999999999999998743 22 223445688899999999999999999974222226789999
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
+...+...|++++|.+.+++..+.. +.+..+|..+...|...|++++|...|++..+.. +.+..++..+...|.+.|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 9999999999999999999998753 2357789999999999999999999999998764 3358889999999999999
Q ss_pred hhHHHHHHHHHHhhc
Q 046547 328 WKLATVVRQRFAELK 342 (343)
Q Consensus 328 ~~~a~~~~~~m~~~~ 342 (343)
+++|.+.|++..++.
T Consensus 297 ~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 297 YREAVSNFLTALSLQ 311 (365)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999988764
No 21
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.71 E-value=1.5e-14 Score=132.60 Aligned_cols=226 Identities=12% Similarity=0.032 Sum_probs=179.4
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
++...|++++|...+++..+.. |+...+..+...+...+ ++++|.+.+++..+.. +.+..+|..+...+...|+++
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKE-NSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSS-CCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhc-CHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 5667789999999999998754 66666777666665554 6899999999987754 345778888999999999999
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+|...|++..+.. +.+..++..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|...++++
T Consensus 328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999988754 234677888999999999999999999999863 3445678899999999999999999999998
Q ss_pred HHcC-----CCCchhhHHHHHHHHHhc----------ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 269 ERKG-----CPIGFQGYEVVVEGCLEC----------REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 269 ~~~g-----~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
.+.. .......+..+...+... |++++|...|++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 405 KRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 7532 111111233344567777 99999999999988764 3467889999999999999999999
Q ss_pred HHHHHHhhc
Q 046547 334 VRQRFAELK 342 (343)
Q Consensus 334 ~~~~m~~~~ 342 (343)
.|++..++.
T Consensus 484 ~~~~al~~~ 492 (537)
T 3fp2_A 484 LFEDSAILA 492 (537)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHhC
Confidence 999988765
No 22
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.70 E-value=5.4e-15 Score=125.00 Aligned_cols=251 Identities=9% Similarity=-0.008 Sum_probs=189.2
Q ss_pred hhhcccchHHHHHHHHhcCCCCCCCCh--hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccC
Q 046547 73 FPQNHRIKVIDEMLESFIPLRPRSRPK--IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC 150 (343)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~ 150 (343)
....|+...+....+.. ....|+. ...-.+.+ ++...|+++.|+..++. .-.|+..++..+...++.. +
T Consensus 9 ~~~~g~y~~ai~~~~~~---~~~~p~~~~e~~~~l~r-~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~-~ 79 (291)
T 3mkr_A 9 AFYIGSYQQCINEAQRV---KPSSPERDVERDVFLYR-AYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASH-S 79 (291)
T ss_dssp HHHTTCHHHHHHHHHHS---CCCSHHHHHHHHHHHHH-HHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCS-T
T ss_pred HHHHHHHHHHHHHHHhc---ccCCchhhHHHHHHHHH-HHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCC-C
Confidence 33445544444444443 3334443 23233344 56677999999987754 2356777777777776665 4
Q ss_pred chhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
+.++|.+.++++...+..|+ ...+..+-..+...|++++|.+.+++ +.+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 68999999999988776564 45566666889999999999999987 467888999999999999999999999
Q ss_pred HHHHhcCCCCCchhHH---HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 230 KEMVLNMGLMPRQGMV---IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+.+.+. .|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++..+.
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~ 229 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDK 229 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999864 3554222 23334455669999999999999986 4457778999999999999999999999998876
Q ss_pred CCCCCHHHHHHHHHHHhccCChhH-HHHHHHHHHhhcC
Q 046547 307 GFIPYIKVRQKVVEGLAGVGEWKL-ATVVRQRFAELKS 343 (343)
Q Consensus 307 g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~ 343 (343)
. +-+..++..++..+...|+.++ +.++++++.++.|
T Consensus 230 ~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 230 D-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp C-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred C-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 4 3378889999999999999976 6789999887764
No 23
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.68 E-value=6.5e-15 Score=128.49 Aligned_cols=258 Identities=13% Similarity=0.013 Sum_probs=198.4
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhcc
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERR 149 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~ 149 (343)
...+...|+.+.+.+.++......|. +...|..+.. ++...|++++|+..|+++.+.. +.+..++..+...+...+
T Consensus 72 ~~~~~~~g~~~~A~~~~~~al~~~p~--~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g 147 (365)
T 4eqf_A 72 GLKRLKEGDLPVTILFMEAAILQDPG--DAEAWQFLGI-TQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYTNTS 147 (365)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTT--CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhCcC--CHHHHHHHHH-HHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHccc
Confidence 45566777777777777776655443 4667777775 7778899999999999998854 234677888888877775
Q ss_pred CchhHHHHHHHHHHhcCCccC-----------HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC-CCHhhHHHHHHHHh
Q 046547 150 CQSQSVADILLEMKSIGYHPD-----------CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PDLESYSIVIGAMS 217 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~ 217 (343)
++++|...++++.+.. |+ ...+..+...+...|++++|...|+++.+.... ++..++..+...+.
T Consensus 148 -~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~ 224 (365)
T 4eqf_A 148 -HQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFH 224 (365)
T ss_dssp -CHHHHHHHHHHHHHHC--HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHH
Confidence 6999999999998753 32 223344578899999999999999999876422 26788999999999
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHH
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 297 (343)
..|++++|+..|++..+ ..+.+..+|..+..+|.+.|++++|...|++..+.. +.+..++..+...|.+.|++++|.
T Consensus 225 ~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~ 301 (365)
T 4eqf_A 225 LSGEFNRAIDAFNAALT--VRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAV 301 (365)
T ss_dssp HHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 99999999999999986 344567899999999999999999999999998753 224678889999999999999999
Q ss_pred HHHHHHhHCCC---C--------CCHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 298 KTVMGMTERGF---I--------PYIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 298 ~~~~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
..|+++.+..- . .+..+|..+..++...|+.+.+.++.++
T Consensus 302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999876421 1 1357899999999999999999887654
No 24
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.67 E-value=1.8e-14 Score=123.22 Aligned_cols=265 Identities=11% Similarity=-0.045 Sum_probs=196.6
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
..+-.....+.+.|++++|.++|+++... .|. +...+..+.. ++.
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------------------------------~~~--~~~~~~~l~~-~~~ 66 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQA--------------------------------APE--REEAWRSLGL-TQA 66 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------CTT--CHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHh--------------------------------CCC--CHHHHHHHHH-HHH
Confidence 34556666677777777777777765432 111 3445555554 666
Q ss_pred cCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH--------------
Q 046547 112 SLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL-------------- 177 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l-------------- 177 (343)
..|++++|.+.++++.+.. +.+..++..+...+...+ ++++|.+.+++..+... .+...+..+
T Consensus 67 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 143 (327)
T 3cv0_A 67 ENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH-NANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQS 143 (327)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTST-TTTTC------------------
T ss_pred HcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHH
Confidence 7789999999999988753 235566666666666665 68899999988876531 222233322
Q ss_pred HH-HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 178 VS-SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 178 l~-~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
.. .+...|++++|.+.++++.+.. +.+..++..+...+...|++++|...+++.... .+.+..++..+...+...|
T Consensus 144 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 144 EDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGN 220 (327)
T ss_dssp --CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcC
Confidence 22 3778899999999999988754 336788899999999999999999999998853 3446778999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-----------CHHHHHHHHHHHhcc
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-----------YIKVRQKVVEGLAGV 325 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-----------~~~~~~~li~~~~~~ 325 (343)
++++|...+++..+.. +.+..++..+...|...|++++|.+.+++..+....+ +..++..+..+|.+.
T Consensus 221 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 299 (327)
T 3cv0_A 221 RPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVM 299 (327)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhc
Confidence 9999999999988753 2356788888999999999999999999987653221 477888999999999
Q ss_pred CChhHHHHHHHHH
Q 046547 326 GEWKLATVVRQRF 338 (343)
Q Consensus 326 g~~~~a~~~~~~m 338 (343)
|++++|..++++.
T Consensus 300 g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 300 NRPDLVELTYAQN 312 (327)
T ss_dssp TCHHHHHHHTTCC
T ss_pred CCHHHHHHHHHHH
Confidence 9999999988654
No 25
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1e-13 Score=114.37 Aligned_cols=226 Identities=8% Similarity=0.001 Sum_probs=184.6
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCc--cC----Hhh
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PD----CGT 173 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--~~----~~~ 173 (343)
..|..+-. .+...|++++|...|++..+.. .+...+..+...+...+ ++++|.+.+++..+.... ++ ..+
T Consensus 6 ~~~~~~g~-~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 6 DKEKAEGN-KFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKG-EYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHH-HHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHH-HHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 34555554 5667799999999999998877 77788888888877775 699999999998764321 11 578
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 253 (343)
+..+...+...|++++|...|++..+.. |+. ..+...|++++|...++.+.. ..+.+...+..+...+.
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~ 150 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYF 150 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHH
Confidence 8899999999999999999999998753 443 345556889999999999985 33446677889999999
Q ss_pred hCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
..|++++|...+++..+.. +.+..++..+...|...|++++|.+.+++..+.. +.+...+..+...|.+.|++++|.+
T Consensus 151 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~ 228 (258)
T 3uq3_A 151 TKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALE 228 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 9999999999999998753 2356788889999999999999999999998764 3357889999999999999999999
Q ss_pred HHHHHHhhc
Q 046547 334 VRQRFAELK 342 (343)
Q Consensus 334 ~~~~m~~~~ 342 (343)
.+++..++.
T Consensus 229 ~~~~a~~~~ 237 (258)
T 3uq3_A 229 TLDAARTKD 237 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhC
Confidence 999988764
No 26
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.64 E-value=1.6e-13 Score=117.32 Aligned_cols=234 Identities=9% Similarity=-0.048 Sum_probs=185.6
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
..+-..-. .+...|++++|..+|+++.+.. +.+...+..+...+...+ ++++|...+++..+.. +.+..++..+..
T Consensus 22 ~~~~~~a~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 22 ENPMEEGL-SMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENE-KDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp SCHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 33444443 5667799999999999998754 235566777777777765 6999999999998763 446788899999
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH--------------HH-HHhcCCChhHHHHHHHHHHhcCCCCCchhH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV--------------IG-AMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l--------------l~-~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 244 (343)
.+...|++++|.+.+++..+... .+...+..+ .. .+...|++++|...++++... .+.+..+
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~ 174 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEM--NPNDAQL 174 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC--------------------CCTTSHHHHHHHHHHHHHHHHH--STTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhh--CCCCHHH
Confidence 99999999999999999987642 122333332 22 377889999999999999863 3447788
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 324 (343)
+..+...+...|++++|.+.++++.+.. +.+..++..+...|...|++++|.+.++++.+.. +.+..++..+...|..
T Consensus 175 ~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~ 252 (327)
T 3cv0_A 175 HASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSN 252 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 9999999999999999999999998753 2356788899999999999999999999988764 3467889999999999
Q ss_pred cCChhHHHHHHHHHHhhc
Q 046547 325 VGEWKLATVVRQRFAELK 342 (343)
Q Consensus 325 ~g~~~~a~~~~~~m~~~~ 342 (343)
.|++++|.+.+++..+..
T Consensus 253 ~g~~~~A~~~~~~a~~~~ 270 (327)
T 3cv0_A 253 MSQYDLAAKQLVRAIYMQ 270 (327)
T ss_dssp TTCHHHHHHHHHHHHHHH
T ss_pred hccHHHHHHHHHHHHHhC
Confidence 999999999999987764
No 27
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.63 E-value=1.2e-12 Score=113.30 Aligned_cols=285 Identities=8% Similarity=0.022 Sum_probs=212.7
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCC-hHHH---hhhhhhcccchHHHHHHHHhcCCCCCC-CChhhHH
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPN-PFSF---LSNFPQNHRIKVIDEMLESFIPLRPRS-RPKIAYD 103 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-p~~~~~~ 103 (343)
.+...+..+...+...|++++|.+.++...... |+ ...+ ...+...|+.+.+.+.++......|.. .+...+.
T Consensus 35 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~ 112 (359)
T 3ieg_A 35 DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK--MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112 (359)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHH
Confidence 356789999999999999999999999988653 43 2333 456667788888888888776654400 1233333
Q ss_pred HHH-----------HHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh
Q 046547 104 YLL-----------SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172 (343)
Q Consensus 104 ~li-----------~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 172 (343)
.+. ...+...|++++|...++++.+.. +.+...+..+...+...+ ++++|...++...+.. +.+..
T Consensus 113 ~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~ 189 (359)
T 3ieg_A 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELRELRAECFIKEG-EPRKAISDLKAASKLK-SDNTE 189 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTC-SCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhC-CCCHH
Confidence 331 125667899999999999998754 335566677777777765 7999999999998763 45678
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH------------HHHHHHhcCCChhHHHHHHHHHHhcCCCCC
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS------------IVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 240 (343)
++..+...+...|++++|...|++..+... .+...+. .+...+...|++++|...+++.... . +.
T Consensus 190 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~ 266 (359)
T 3ieg_A 190 AFYKISTLYYQLGDHELSLSEVRECLKLDQ-DHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PS 266 (359)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CC
Confidence 899999999999999999999999887532 2233332 2366788999999999999999864 2 12
Q ss_pred ch----hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-CHHHH
Q 046547 241 RQ----GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-YIKVR 315 (343)
Q Consensus 241 ~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~ 315 (343)
+. ..+..+..++.+.|++++|...++...+.. +.+..++..+...|...|++++|.+.|++..+.. | +...+
T Consensus 267 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~ 343 (359)
T 3ieg_A 267 VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN--ENDQQIR 343 (359)
T ss_dssp SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--TTCHHHH
T ss_pred chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCChHHH
Confidence 22 335567789999999999999999998852 2366788889999999999999999999998754 4 45556
Q ss_pred HHHHHHHhc
Q 046547 316 QKVVEGLAG 324 (343)
Q Consensus 316 ~~li~~~~~ 324 (343)
..+..+...
T Consensus 344 ~~l~~~~~~ 352 (359)
T 3ieg_A 344 EGLEKAQRL 352 (359)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 655555443
No 28
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=3e-15 Score=130.53 Aligned_cols=250 Identities=8% Similarity=0.007 Sum_probs=104.4
Q ss_pred CccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHH
Q 046547 43 DAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAI 122 (343)
Q Consensus 43 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~ 122 (343)
+.|++++|.+.++++. .|+ +|..+.....+.+.+.++++.+.+ .+|...|..++. .+...|++++|...
T Consensus 15 ~~~~ld~A~~fae~~~----~~~--vWs~La~A~l~~g~~~eAIdsfik----a~D~~~y~~V~~-~ae~~g~~EeAi~y 83 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN----EPA--VWSQLAKAQLQKGMVKEAIDSYIK----ADDPSSYMEVVQ-AANTSGNWEELVKY 83 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC----ChH--HHHHHHHHHHHcCCHHHHHHHHHc----CCCHHHHHHHHH-HHHhCCCHHHHHHH
Confidence 5577889999998873 344 443333333444445555555543 346778888886 67778999999997
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCC
Q 046547 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC 202 (343)
Q Consensus 123 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 202 (343)
++..++. .+++.+.+.++.+|.+.| +++++.++++ .|+..+|+.+...|...|++++|...|..+
T Consensus 84 l~~ark~--~~~~~i~~~Li~~Y~Klg-~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----- 148 (449)
T 1b89_A 84 LQMARKK--ARESYVETELIFALAKTN-RLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 148 (449)
T ss_dssp ----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----
T ss_pred HHHHHHh--CccchhHHHHHHHHHHhC-CHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----
Confidence 7776663 456777888888888875 5877777774 367779999999999999999999999877
Q ss_pred CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHH
Q 046547 203 VPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282 (343)
Q Consensus 203 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 282 (343)
..|..+..++++.|++++|.+.++.+ .++.+|..++.+|+..|+++.|......+. +.|+ -...
T Consensus 149 ----~n~~~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~ 212 (449)
T 1b89_A 149 ----SNFGRLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEE 212 (449)
T ss_dssp ----TCHHHHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHH
T ss_pred ----hhHHHHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHH
Confidence 47889999999999999999999887 167889999999999999999955444321 3333 3446
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc--CChhHHHHHH
Q 046547 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV--GEWKLATVVR 335 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--g~~~~a~~~~ 335 (343)
++..|.+.|++++|..+++...... +-....|+-|--.|++- |+..+..+.|
T Consensus 213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888999999999999998877554 44566777776666664 3555555444
No 29
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.61 E-value=2.2e-14 Score=125.13 Aligned_cols=267 Identities=8% Similarity=0.004 Sum_probs=133.8
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
...+|..+..++.+.|++++|++.|.+ .+|..+|..........+.++++...+.......++..+.+.++. +
T Consensus 31 ~~~vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~~~~~~i~~~Li~-~ 103 (449)
T 1b89_A 31 EPAVWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIF-A 103 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCccchhHHHHHH-H
Confidence 446899999999999999999999975 356666644444444455555555544333334456778888995 8
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVE 189 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~ 189 (343)
+.+.|+++++.++++ .|+..+|+.+...|...| .+++|...|..+ ..|..+..++.+.|++++
T Consensus 104 Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g-~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~ 166 (449)
T 1b89_A 104 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEK-MYDAAKLLYNNV---------SNFGRLASTLVHLGEYQA 166 (449)
T ss_dssp -----CHHHHTTTTT-------CC-----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHH
T ss_pred HHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcC-CHHHHHHHHHHh---------hhHHHHHHHHHHhccHHH
Confidence 999999999998885 377889999999888876 699999999976 589999999999999999
Q ss_pred HHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 190 AAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 190 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
|.+.++++ .++.+|..++.+|+..|+++.|......+ .+.|+. ...++..|.+.|.+++|..+++...
T Consensus 167 AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L----~~~ad~--l~~lv~~Yek~G~~eEai~lLe~aL 234 (449)
T 1b89_A 167 AVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI----VVHADE--LEELINYYQDRGYFEELITMLEAAL 234 (449)
T ss_dssp HHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT----TTCHHH--HHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH----HhCHhh--HHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 99999988 37899999999999999999996554432 233443 4579999999999999999999877
Q ss_pred HcCCCCchhhHHHHHHHHHh--cccHhHHHHHHHHHhHCCCCC------CHHHHHHHHHHHhccCChhHHHHHH
Q 046547 270 RKGCPIGFQGYEVVVEGCLE--CREYILAGKTVMGMTERGFIP------YIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
... +.....|+-|--.|++ .++..+.++.|.. .-.++| +...|.-++.-|...+++|.|....
T Consensus 235 ~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 235 GLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp TST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHHH
Confidence 543 3344566666555655 4555566665542 224444 4667888999999999999887643
No 30
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.58 E-value=1.9e-12 Score=106.55 Aligned_cols=200 Identities=12% Similarity=0.023 Sum_probs=122.5
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
..|..+.. .+...|++++|...|+++.+.. +.+...+..+...+...+ ++++|.+.+++..+.. +.+...+..+..
T Consensus 38 ~~~~~~a~-~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 38 DAYIQLGL-GYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEM-EPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHH-HHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHH-HHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 34444443 4556677777777777766543 224445555555555544 5777777777766543 234556666666
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
.|...|++++|.+.|+++.+.+..| +...+..+...+...|++++|...+++.... .+.+...+..+...+...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCCH
Confidence 7777777777777777766533333 3455666666677777777777777776642 233455666666777777777
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
++|...++...+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 77777777666532 234445566666666777777777777766654
No 31
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.57 E-value=2.6e-12 Score=103.50 Aligned_cols=202 Identities=9% Similarity=-0.073 Sum_probs=138.9
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
...+..+.. .+...|++++|.+.++++.+.. +.+...+..+...+...+ ++++|.+.+++..+.. +.+..++..+.
T Consensus 8 ~~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 8 SNIKTQLAM-EYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLK-VNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHH-HHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcC-ChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 445555554 5666788888888888877643 234556666666666654 5788888888776653 33566777777
Q ss_pred HHHHcc-CcHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 179 SSLCAI-DQLVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 179 ~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
..+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...+.+.|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcC
Confidence 788888 888888888888776333333 566777777788888888888888887752 2334667777777788888
Q ss_pred cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 257 EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
++++|...++...+..-..+...+..+...+...|+.+.|..+++.+.+.
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 88888888887766432134556666667777788888888877777654
No 32
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.57 E-value=1.8e-11 Score=102.13 Aligned_cols=223 Identities=10% Similarity=-0.048 Sum_probs=182.5
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----ccCchhHHHHHHHHHHhcCCccCHhhH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE----RRCQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
...+..+-. .+...|++++|...|++..+.+ +...+..+-..+.. .+ ++++|.+.|++..+.+ +...+
T Consensus 6 ~~a~~~lg~-~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~---~~~a~ 77 (273)
T 1ouv_A 6 PKELVGLGA-KSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEK-NLKKAASFYAKACDLN---YSNGC 77 (273)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHH
T ss_pred hHHHHHHHH-HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCC-CHHHHHHHHHHHHHCC---CHHHH
Confidence 344444443 5667799999999999998833 34555555555555 54 6999999999998876 67788
Q ss_pred HHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCchhHHH
Q 046547 175 NYLVSSLCA----IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLMPRQGMVI 246 (343)
Q Consensus 175 ~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 246 (343)
..+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|+..|+...+. + +...+.
T Consensus 78 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~ 150 (273)
T 1ouv_A 78 HLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCT 150 (273)
T ss_dssp HHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHH
T ss_pred HHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHH
Confidence 888889988 999999999999998875 67788888888988 99999999999999873 5 556777
Q ss_pred HHHHHHHh----CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cccHhHHHHHHHHHhHCCCCCCHHHHHHH
Q 046547 247 KVAAALRA----NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE----CREYILAGKTVMGMTERGFIPYIKVRQKV 318 (343)
Q Consensus 247 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (343)
.+-..|.. .+++++|...|++..+.+ +...+..+-..|.. .+++++|.+.|++..+.+ +...+..+
T Consensus 151 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l 224 (273)
T 1ouv_A 151 ILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNL 224 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 88888888 899999999999998864 45677778888888 999999999999998876 25677788
Q ss_pred HHHHhc----cCChhHHHHHHHHHHhhc
Q 046547 319 VEGLAG----VGEWKLATVVRQRFAELK 342 (343)
Q Consensus 319 i~~~~~----~g~~~~a~~~~~~m~~~~ 342 (343)
...|.. .|++++|.+.|++..++.
T Consensus 225 ~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 225 GAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 888888 999999999999887764
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.57 E-value=4.5e-13 Score=108.12 Aligned_cols=180 Identities=11% Similarity=-0.048 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC-----------C
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA-----------R 220 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----------~ 220 (343)
+++|...|++..+.. +.+...+..+-..+.+.|++++|...|++..+.. +.+...+..+...+... |
T Consensus 21 ~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~g 98 (217)
T 2pl2_A 21 YDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEAYVALYRQAEDRERGKG 98 (217)
T ss_dssp HHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHTCSSHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhhhhhhhhccccc
Confidence 444444444444321 2223344444444444444444444444444322 11233444444444444 6
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTV 300 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~ 300 (343)
++++|+..+++..+. -+-+...+..+-.++...|++++|...|++..+.. .+...+..+-..|...|++++|...|
T Consensus 99 ~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~ 174 (217)
T 2pl2_A 99 YLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY 174 (217)
T ss_dssp HHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 666666666666532 12234555566666666666666666666666554 45555666666666666666666666
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
++..+.. +.+...+..+...+.+.|++++|.+.+++.
T Consensus 175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHHHS-TTCHHHHHHHHHHHTC--------------
T ss_pred HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 6665543 224555666666666666666666666543
No 34
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.55 E-value=1.2e-12 Score=109.01 Aligned_cols=249 Identities=10% Similarity=-0.113 Sum_probs=169.8
Q ss_pred hhcccchHHHHHHHHhcCCCCCCC--ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCc
Q 046547 74 PQNHRIKVIDEMLESFIPLRPRSR--PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ 151 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~p--~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~ 151 (343)
...++.+.+.+.++......+..+ +...+..+.. ++...|++++|...|+++.+.. +.+..++..+...+...+ +
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~-~ 92 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGV-LYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAG-N 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTT-C
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHH-HHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHcc-C
Confidence 344555666666666655433222 2455655554 6777789999999999988754 234667777777777765 6
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHH
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKE 231 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 231 (343)
+++|.+.+++..+.. +.+...+..+...|...|++++|.+.|+++.+.. |+.......+..+...|++++|...++.
T Consensus 93 ~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 93 FDAAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSLWLYLAEQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHhcCHHHHHHHHHH
Confidence 889999998887753 3356778888888899999999999999887743 4444444455555667889999999987
Q ss_pred HHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCC--C-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 232 MVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP--I-GFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 232 m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
... ..+++...+. +...+...++.++|...+....+.... | +..++..+...|...|++++|...|++..+..
T Consensus 170 ~~~--~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~- 245 (275)
T 1xnf_A 170 HFE--KSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN- 245 (275)
T ss_dssp HHH--HSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHh--cCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-
Confidence 775 3344444444 666777778888888888877653211 1 14677778888889999999999999887654
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHH
Q 046547 309 IPYIKVRQKVVEGLAGVGEWKLATVVR 335 (343)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~a~~~~ 335 (343)
|+. +.....++...|++++|.+.+
T Consensus 246 -p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 246 -VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp -CTT--CHHHHHHHHHHHHHHHC----
T ss_pred -chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 422 223355777788888887765
No 35
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.54 E-value=6.1e-12 Score=101.33 Aligned_cols=204 Identities=6% Similarity=-0.088 Sum_probs=168.6
Q ss_pred cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
+...+..+...+...+ ++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+..++..+.
T Consensus 7 ~~~~~~~~~~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~ 83 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQ-DYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYG 83 (225)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHH
Confidence 4455666666766765 6999999999998753 3457788899999999999999999999998754 34677889999
Q ss_pred HHHhcC-CChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc
Q 046547 214 GAMSTA-RKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR 291 (343)
Q Consensus 214 ~~~~~~-~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g 291 (343)
..+... |++++|...++.+.. .+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHhcCcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 999999 999999999999986 23334 46778999999999999999999999998753 224678888899999999
Q ss_pred cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 292 EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++++|.+.+++..+.....+...+..+...+...|+.+.|..+++.+.+..
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 212 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF 212 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC
Confidence 999999999998876422467778888888999999999999999987654
No 36
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.53 E-value=7.3e-12 Score=103.04 Aligned_cols=202 Identities=12% Similarity=0.011 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
...+..+...+...+ ++++|.+.+++..+.. +.+...+..+...|...|++++|.+.|++..+.. +.+..++..+..
T Consensus 37 ~~~~~~~a~~~~~~~-~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 113 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRG-NTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGG 113 (252)
T ss_dssp HHHHHHHHHHHHHTT-CTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-ChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHH
Confidence 355666666666665 6999999999998763 4467788899999999999999999999988764 236788899999
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccH
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY 293 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 293 (343)
.+...|++++|.++++++.. .+..| +...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|++
T Consensus 114 ~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 114 FLYEQKRYEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHTTCHHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhHHHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 99999999999999999986 34445 56778899999999999999999999988753 23467888899999999999
Q ss_pred hHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 294 ILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 294 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+..
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 99999999988754 3567788899999999999999999999998764
No 37
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=9.6e-13 Score=107.55 Aligned_cols=201 Identities=5% Similarity=-0.056 Sum_probs=128.9
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
...|..+-. .+...|++++|...|+++.+.. +.+...+..+...+...+ ++++|.+.+++..+.. +.+...+..+.
T Consensus 23 ~~~~~~~a~-~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~-~~~~A~~~~~~~~~~~-~~~~~~~~~la 98 (243)
T 2q7f_A 23 SMTGGQQMG-RGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVN-ELERALAFYDKALELD-SSAATAYYGAG 98 (243)
T ss_dssp --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHH-HHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC-CcchHHHHHHH
Confidence 344544443 5566788888888888887643 224555666666655554 5888888888877653 33566777777
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
..+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++.... .+.+...+..+...+.+.|++
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~ 175 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFGMCLANEGML 175 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCH
Confidence 78888888888888888877653 235667777777888888888888888887752 334566777777778888888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
++|...+++..+.. +.+..++..+...|...|++++|.+.++++.+..
T Consensus 176 ~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 176 DEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 88888888776642 2245567777777888888888888888776653
No 38
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.53 E-value=3e-12 Score=106.54 Aligned_cols=227 Identities=12% Similarity=-0.014 Sum_probs=175.4
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC--HhhHHHHHHHHHccC
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD--CGTCNYLVSSLCAID 185 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~--~~~~~~ll~~~~~~~ 185 (343)
.+...|++++|+..|++..+.. |+ ...+..+...+...+ ++++|...+++..+.+..|+ ...|..+...+...|
T Consensus 12 ~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~~l~~~~~~~~-~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~ 88 (272)
T 3u4t_A 12 FLFKNNNYAEAIEVFNKLEAKK--YNSPYIYNRRAVCYYELA-KYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG 88 (272)
T ss_dssp HHHTTTCHHHHHHHHHHHHHTT--CCCSTTHHHHHHHHHHTT-CHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHhcCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHh-hHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence 4557799999999999998754 43 346666766777765 69999999999988432222 234888899999999
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMI 265 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~ 265 (343)
++++|.+.|++..+.. +.+..++..+...+...|++++|+..|++..+ -.+.+...+..+...+...+++++|.+.+
T Consensus 89 ~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~ 165 (272)
T 3u4t_A 89 QDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIR--PTTTDPKVFYELGQAYYYNKEYVKADSSF 165 (272)
T ss_dssp CHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCC--SSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhh--cCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988754 23567889999999999999999999999874 33445666777773444456999999999
Q ss_pred HHHHHcCCCCc-hhhHHHHHHHHHhccc---HhHHHHHHHHHhHCC-CCCC------HHHHHHHHHHHhccCChhHHHHH
Q 046547 266 EFLERKGCPIG-FQGYEVVVEGCLECRE---YILAGKTVMGMTERG-FIPY------IKVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 266 ~~m~~~g~~p~-~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~a~~~ 334 (343)
++..+. .|+ ...+..+...+...|+ +++|...+++..+.. -.|+ ..+|..+...|...|++++|.+.
T Consensus 166 ~~a~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 243 (272)
T 3u4t_A 166 VKVLEL--KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243 (272)
T ss_dssp HHHHHH--STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHh--CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 999874 344 5667777777888888 888998888876542 1233 35788899999999999999999
Q ss_pred HHHHHhhcC
Q 046547 335 RQRFAELKS 343 (343)
Q Consensus 335 ~~~m~~~~~ 343 (343)
+++..++.|
T Consensus 244 ~~~al~~~p 252 (272)
T 3u4t_A 244 WKNILALDP 252 (272)
T ss_dssp HHHHHHHCT
T ss_pred HHHHHhcCc
Confidence 999988764
No 39
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.47 E-value=2.7e-12 Score=106.90 Aligned_cols=223 Identities=11% Similarity=-0.054 Sum_probs=116.6
Q ss_pred cCCChHHHHHHHHHHHhcCCC--c-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 112 SLHPLPLALAILQRTLRSGCV--P-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~--p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
..|++++|+..|+++.+.... | +..++..+...+...+ ++++|...|++..+.. +.+..+|..+...|...|+++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~ 94 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLG-LRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD 94 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence 345566666666666554211 1 2334444444444443 4666666666665542 224555666666666666666
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+|.+.|++..+.. +.+..++..+...+...|++++|...|+++... .|+.......+..+...|++++|...++..
T Consensus 95 ~A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 95 AAYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 6666666665532 123455566666666666666666666666532 233333333333444556666666666555
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC--C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI--P-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~--p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.... +++...+ .+...+...++.++|.+.+.+..+.... | +..++..+...|.+.|++++|.+.|++..+..
T Consensus 171 ~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 171 FEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 4431 2222222 2444555555556666666655443211 0 13455566666666666666666666655543
No 40
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.46 E-value=6.6e-12 Score=106.38 Aligned_cols=241 Identities=9% Similarity=-0.009 Sum_probs=165.1
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhc-------CCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc------
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRS-------GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI------ 165 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~------ 165 (343)
...+..+-. .+...|++++|...++++.+. ........+..+...+...+ ++++|...+++..+.
T Consensus 27 ~~~~~~l~~-~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~ 104 (311)
T 3nf1_A 27 LRTLHNLVI-QYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKDAANLLNDALAIREKTLG 104 (311)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHHhC
Confidence 456666665 677889999999999998763 22233455666666666665 799999999988754
Q ss_pred C-CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC------CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC-
Q 046547 166 G-YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA------ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNM- 236 (343)
Q Consensus 166 g-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~- 236 (343)
+ ......++..+...|...|++++|...|++..+. +..| ...++..+...+...|++++|..++++.....
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~ 184 (311)
T 3nf1_A 105 KDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQ 184 (311)
T ss_dssp TTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 2 2334567888999999999999999999998764 2223 35678889999999999999999999987520
Q ss_pred ----C-CCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc-------CCCCchhhHHH-------HHHHHHhcccHhHHH
Q 046547 237 ----G-LMPRQGMVIKVAAALRANREMWKAVEMIEFLERK-------GCPIGFQGYEV-------VVEGCLECREYILAG 297 (343)
Q Consensus 237 ----~-~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~~~-------li~~~~~~g~~~~a~ 297 (343)
+ .+....++..+...|...|++++|.+.++++.+. ...+....... +...+...+.+.++.
T Consensus 185 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~ 264 (311)
T 3nf1_A 185 TKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYG 264 (311)
T ss_dssp HTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHH
Confidence 1 2223567888999999999999999999998753 12222222222 222233444455555
Q ss_pred HHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 298 KTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 298 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..+....... ..+..++..+...|.+.|++++|.+++++..++.
T Consensus 265 ~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~ 308 (311)
T 3nf1_A 265 GWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR 308 (311)
T ss_dssp ---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence 5666554332 2356778899999999999999999999988765
No 41
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.46 E-value=1.2e-11 Score=99.72 Aligned_cols=198 Identities=13% Similarity=-0.017 Sum_probs=146.6
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 177 (343)
+...+..+-. .+...|++++|...|++..+.. +.+...+..+-..+...| ++++|...+++..+.. +.+...+..+
T Consensus 4 ~~~~~~~lg~-~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~~~-P~~~~a~~~l 79 (217)
T 2pl2_A 4 AEQNPLRLGV-QLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLG-LVNPALENGKTLVART-PRYLGGYMVL 79 (217)
T ss_dssp CCHHHHHHHH-HHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CCcHHHHHHH
Confidence 4455555554 6677899999999999998754 224455555655666655 6999999999998753 3356788888
Q ss_pred HHHHHcc-----------CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHH
Q 046547 178 VSSLCAI-----------DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246 (343)
Q Consensus 178 l~~~~~~-----------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 246 (343)
-..+... |++++|...|++..+.. +-+...+..+-.++...|++++|+..|++..+. . .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~--~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALAL-E--DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C--CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhc-c--cchHHHH
Confidence 8899999 99999999999998753 235678888999999999999999999999974 5 7888899
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.+..++...|++++|...|++..+.. +.+...+..+...+...|++++|...+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 99999999999999999999998743 2245678888889999999999999988653
No 42
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.44 E-value=1e-11 Score=101.40 Aligned_cols=203 Identities=8% Similarity=-0.074 Sum_probs=149.0
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 212 (343)
.....|..+...+...+ ++++|...|++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+
T Consensus 21 ~~~~~~~~~a~~~~~~~-~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 97 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFG-DYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGA 97 (243)
T ss_dssp ----------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHH
Confidence 34455666666666665 6889999999887743 3457788888888999999999999999887653 2367788888
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
...+...|++++|...++++.+. .+.+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 98 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 98 GNVYVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 89999999999999999998853 34466778888899999999999999999888743 2356678888888999999
Q ss_pred HhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 293 YILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+++|.+.+++..+.. +.+..++..+...|...|++++|.+.+++..++.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999887764 3457788889999999999999999999887765
No 43
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.44 E-value=2.4e-10 Score=97.27 Aligned_cols=220 Identities=9% Similarity=-0.059 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc------cCch-------hHHHHHHHHHHhcCCccCHhhHHHHHHHHHc
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLER------RCQS-------QSVADILLEMKSIGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~------~~~~-------~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 183 (343)
++|..+|++..+.. +-+...|..+...+... .+++ ++|..+|++..+.-.+-+...|..+...+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 56666777766532 22334444444443321 1233 6677777777652112234466777777777
Q ss_pred cCcHHHHHHHHHHhhhCCCCCC-Hh-hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH-hCccHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPD-LE-SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR-ANREMWK 260 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~-~~~~~~~ 260 (343)
.|++++|..+|++..+. .|+ .. +|..+...+.+.|++++|..+|+...+ ..+++...|........ ..|+.++
T Consensus 112 ~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~--~~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE--DARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHT--STTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHHcCCHHH
Confidence 77777777777777663 343 22 667777777777777777777777764 22233344433332221 2577777
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC-CCC--CHHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG-FIP--YIKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
|..+|+...+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.|+.++|..++++
T Consensus 188 A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 188 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 777777766531 1234566666677777777777777777777652 344 355666667777777777777777777
Q ss_pred HHhhc
Q 046547 338 FAELK 342 (343)
Q Consensus 338 m~~~~ 342 (343)
+.+..
T Consensus 267 a~~~~ 271 (308)
T 2ond_A 267 RFTAF 271 (308)
T ss_dssp HHHHT
T ss_pred HHHHc
Confidence 66543
No 44
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.43 E-value=8e-10 Score=101.32 Aligned_cols=302 Identities=9% Similarity=-0.022 Sum_probs=185.6
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhh----hhcccchH----HHHHHHHhcCCCCCC-CChh
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNF----PQNHRIKV----IDEMLESFIPLRPRS-RPKI 100 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~----~~~~~~~~----~~~~~~~~~~~~~~~-p~~~ 100 (343)
+...|...+..+.+.|+++.|..+|++.... .|++..|.... ...+..+. +..+++......+.. ++..
T Consensus 45 ~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~ 122 (530)
T 2ooe_A 45 SGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQ 122 (530)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHH
Confidence 5666777888888888888888888877654 36655543222 22333332 334555554333322 3456
Q ss_pred hHHHHHHHHhhc---------CCChHHHHHHHHHHHhcCCCccHHHHHHHHHH---H--------H-hccCchhHHH---
Q 046547 101 AYDYLLSYTLQS---------LHPLPLALAILQRTLRSGCVPVPQIRLLLSSA---W--------L-ERRCQSQSVA--- 156 (343)
Q Consensus 101 ~~~~li~~~~~~---------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~---~--------~-~~~~~~~~a~--- 156 (343)
.|...+. .... .|+++.|..+|++..+....+....|...... + . ...+.+..|.
T Consensus 123 ~w~~~~~-~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~ 201 (530)
T 2ooe_A 123 IWVDYIN-FLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVA 201 (530)
T ss_dssp HHHHHHH-HHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHH
Confidence 7777775 3332 47788999999998873211112233221110 0 0 0001122222
Q ss_pred ---------------------------------------------------------HHHHHHHhcCCccCHhhHHHHHH
Q 046547 157 ---------------------------------------------------------DILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 157 ---------------------------------------------------------~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
.+|++.... .+.+...|..+..
T Consensus 202 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~ 280 (530)
T 2ooe_A 202 KEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQ 280 (530)
T ss_dssp HHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHH
T ss_pred HHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHH
Confidence 223332221 1123444555555
Q ss_pred HHHc-------cCcHH-------HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--hh
Q 046547 180 SLCA-------IDQLV-------EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR--QG 243 (343)
Q Consensus 180 ~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~ 243 (343)
.+.+ .|+++ +|..+|++..+.-.+-+...|..+...+.+.|++++|..+|+...+. .|+ ..
T Consensus 281 ~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~ 357 (530)
T 2ooe_A 281 YLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTL 357 (530)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHH
T ss_pred HHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchH
Confidence 5554 57776 88888888875323335777888888888899999999999998852 443 24
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHH-HHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHH
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEG-CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEG 321 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 321 (343)
.|...+..+.+.|++++|.++|++..+. .|+ ...|...... +...|+.++|..+|++..+.. +-+...|..++..
T Consensus 358 ~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~ 434 (530)
T 2ooe_A 358 VYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDY 434 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 7888888888888999999999988764 232 2222222111 335788888999888877653 2257788888888
Q ss_pred HhccCChhHHHHHHHHHHhh
Q 046547 322 LAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 322 ~~~~g~~~~a~~~~~~m~~~ 341 (343)
+.+.|+.++|..+|++..+.
T Consensus 435 ~~~~g~~~~Ar~~~~~al~~ 454 (530)
T 2ooe_A 435 LSHLNEDNNTRVLFERVLTS 454 (530)
T ss_dssp HTTTTCHHHHHHHHHHHHHS
T ss_pred HHhCCCHhhHHHHHHHHHhc
Confidence 88889999999998887654
No 45
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.43 E-value=3.2e-11 Score=105.52 Aligned_cols=232 Identities=5% Similarity=-0.041 Sum_probs=183.2
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLV 178 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll 178 (343)
..|+.+- .++...|++++|+..+++..+.. |+ ...|+.+-..+...++++++|+..+++..+.. +-+...|+.+-
T Consensus 98 ~a~~~lg-~~~~~~g~~~~Al~~~~~al~l~--P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g 173 (382)
T 2h6f_A 98 DVYDYFR-AVLQRDERSERAFKLTRDAIELN--AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRR 173 (382)
T ss_dssp HHHHHHH-HHHHHTCCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHH-HHHHHCCChHHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHH
Confidence 4455555 36778899999999999998854 54 45566666666666534999999999998853 33578899999
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh-Ccc
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA-NRE 257 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~-~~~ 257 (343)
..+...|++++|+..|++..+.. +-+...|..+..++...|++++|+..|+++.+. -+-+...|+.+-.++.+ .|.
T Consensus 174 ~~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~ 250 (382)
T 2h6f_A 174 VLVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGY 250 (382)
T ss_dssp HHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCS
T ss_pred HHHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCc
Confidence 99999999999999999998864 236788999999999999999999999999963 33467789999999998 666
Q ss_pred HHHH-----HHHHHHHHHcCCCC-chhhHHHHHHHHHhcc--cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccC---
Q 046547 258 MWKA-----VEMIEFLERKGCPI-GFQGYEVVVEGCLECR--EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVG--- 326 (343)
Q Consensus 258 ~~~a-----~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--- 326 (343)
.++| +..+++..+. .| +...|..+...+...| ++++|.+.+.++ + .-..+...+..+...|.+.|
T Consensus 251 ~~eA~~~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~ 326 (382)
T 2h6f_A 251 NDRAVLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQ 326 (382)
T ss_dssp CSHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhccc
Confidence 5777 5888888773 45 4557888888888888 689999999888 3 22446788889999998874
Q ss_pred ------ChhHHHHHHHHH-Hhhc
Q 046547 327 ------EWKLATVVRQRF-AELK 342 (343)
Q Consensus 327 ------~~~~a~~~~~~m-~~~~ 342 (343)
..++|.++|+++ .+++
T Consensus 327 ~~~~~~~~~~A~~~~~~l~~~~D 349 (382)
T 2h6f_A 327 CDNKEDILNKALELCEILAKEKD 349 (382)
T ss_dssp CSSHHHHHHHHHHHHHHHHHTTC
T ss_pred ccchHHHHHHHHHHHHHHHHHhC
Confidence 358999999998 6665
No 46
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.43 E-value=3.3e-11 Score=94.17 Aligned_cols=166 Identities=13% Similarity=-0.022 Sum_probs=90.2
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+..|..+-..|.+.|++++|.+.|++..+.. +-+..++..+..+|...|++++|...+..... ..+-+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVV--LDTTSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCchhHHHHHHHHH
Confidence 4455555556666666666666666555432 12344555555566666666666666665553 22223444555555
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 330 (343)
.+...++++.|...+.+..+.. +-+...+..+-..|.+.|++++|++.|++..+.. +.+..+|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 5555666666666666555422 1133445555555666666666666666555443 2245555556666666666666
Q ss_pred HHHHHHHHHhh
Q 046547 331 ATVVRQRFAEL 341 (343)
Q Consensus 331 a~~~~~~m~~~ 341 (343)
|.+.|++..++
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 66666655544
No 47
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.41 E-value=6.4e-10 Score=92.67 Aligned_cols=224 Identities=9% Similarity=-0.015 Sum_probs=173.4
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYT 109 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~ 109 (343)
+...+..+-..+.+.|++++|.+.|++..+.+ +...+..+-. .
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~------------------------------------~~~a~~~lg~-~ 47 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK------------------------------------ENSGCFNLGV-L 47 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT------------------------------------CHHHHHHHHH-H
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC------------------------------------CHHHHHHHHH-H
Confidence 34455556666666677777777776543311 2233333332 4
Q ss_pred hhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh----ccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHH
Q 046547 110 LQS----LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE----RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSL 181 (343)
Q Consensus 110 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~ 181 (343)
+.. .+++++|...|++..+.+ +...+..+-..+.. .+ ++++|...|++..+.+ +...+..+-..|
T Consensus 48 ~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~-~~~~A~~~~~~a~~~~---~~~a~~~lg~~~ 120 (273)
T 1ouv_A 48 YYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQ-NTNKALQYYSKACDLK---YAEGCASLGGIY 120 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC-CHHHHHHHHHHHHHTT---CHHHHHHHHHHH
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCccc-CHHHHHHHHHHHHHcC---CccHHHHHHHHH
Confidence 555 789999999999998876 56666666666666 54 6999999999998875 677888888889
Q ss_pred Hc----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 046547 182 CA----IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 182 ~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 253 (343)
.. .+++++|.+.|++..+.+ +...+..+-..|.. .+++++|+..|+...+. + +...+..+-..|.
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH
Confidence 88 999999999999998876 56677778888887 89999999999999863 3 4567888888899
Q ss_pred h----CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cccHhHHHHHHHHHhHCC
Q 046547 254 A----NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE----CREYILAGKTVMGMTERG 307 (343)
Q Consensus 254 ~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 307 (343)
. .+++++|...+++..+.+. ...+..+-..|.+ .+++++|.+.|++..+.|
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~~---~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELEN---GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCCC---HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 9 9999999999999988642 5667777888888 999999999999998876
No 48
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.41 E-value=3.1e-11 Score=99.32 Aligned_cols=192 Identities=11% Similarity=0.008 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCC--CCC----Hhh
Q 046547 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC--VPD----LES 208 (343)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~~----~~~ 208 (343)
...+..+-..+...+ ++++|...+++..+.. .+...+..+..++...|++++|.+.+++..+... .|+ ..+
T Consensus 5 a~~~~~~g~~~~~~~-~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 81 (258)
T 3uq3_A 5 ADKEKAEGNKFYKAR-QFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKS 81 (258)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-cHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHH
Confidence 345666666777765 7999999999998877 7888999999999999999999999999876431 122 578
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGC 287 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~ 287 (343)
+..+...+...|++++|...|++.... .|+. ..+.+.|++++|...++.+... .| +...+..+...+
T Consensus 82 ~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~ 149 (258)
T 3uq3_A 82 FARIGNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEY 149 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHH
Confidence 899999999999999999999999863 3442 4567778999999999998874 34 455778888889
Q ss_pred HhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 288 LECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 288 ~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
...|++++|...+++..+.. +.+..++..+...|...|++++|.+.+++..+..
T Consensus 150 ~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 203 (258)
T 3uq3_A 150 FTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD 203 (258)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 99999999999999998765 3468889999999999999999999999988764
No 49
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.40 E-value=2e-09 Score=97.71 Aligned_cols=222 Identities=10% Similarity=-0.020 Sum_probs=106.1
Q ss_pred CHHHHHHHHHHHhC----ccCcchHHHHHHHchhcCCCCChHHH-hhhhhh----cccchHHHHHHHHhcCCCCCCCChh
Q 046547 30 SLRTLEETVRAAVD----AKDYQQIPELLGSFEEACQNPNPFSF-LSNFPQ----NHRIKVIDEMLESFIPLRPRSRPKI 100 (343)
Q Consensus 30 ~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~-~~~~~~----~~~~~~~~~~~~~~~~~~~~~p~~~ 100 (343)
+...+..+-..+.. .++++.|.+.|+...+.|. |+.... -..+.. .++.+.+.+.++..... + +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~-~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQGY-TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK-G---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC-HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHH
Confidence 44555555555555 6777777777777665542 222221 122222 33444444444443321 1 233
Q ss_pred hHHHHHHHHhhc----CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhc---cCchhHHHHHHHHHHhcCCccCHhh
Q 046547 101 AYDYLLSYTLQS----LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPDCGT 173 (343)
Q Consensus 101 ~~~~li~~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~~~ 173 (343)
.+..+-. .+.. .+++++|...|++..+.| +...+..+-..|... .++.++|.+.|++..+.| +...
T Consensus 113 a~~~Lg~-~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 113 AQQNLGV-MYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHH-HHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHH-HHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 3333332 3333 456777777777766654 233344443333330 234566666666665543 3445
Q ss_pred HHHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCchhHH
Q 046547 174 CNYLVSSLCA----IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLMPRQGMV 245 (343)
Q Consensus 174 ~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~ 245 (343)
+..+-..|.. .++.++|.+.|++..+.| +...+..+...|.. .++.++|..+|+...+. + +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~-~---~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQ-G---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTT-T---CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHH
Confidence 5555555554 556666666666555543 23334444444443 45555555555554431 2 22233
Q ss_pred HHHHHHHHh----CccHHHHHHHHHHHHH
Q 046547 246 IKVAAALRA----NREMWKAVEMIEFLER 270 (343)
Q Consensus 246 ~~li~~~~~----~~~~~~a~~~~~~m~~ 270 (343)
..+-..|.. .++.++|...|+...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~ 287 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAE 287 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Confidence 333333333 4444455544444443
No 50
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=1.5e-10 Score=104.36 Aligned_cols=309 Identities=10% Similarity=-0.086 Sum_probs=193.2
Q ss_pred CCCHHHHHHHHHHHhCccCcchHHHHHHHchhc-----C-CCCC-hHHHh---hhhhh--cccchHHHHHHHHhcCCCCC
Q 046547 28 MSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA-----C-QNPN-PFSFL---SNFPQ--NHRIKVIDEMLESFIPLRPR 95 (343)
Q Consensus 28 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~~ 95 (343)
.....+|+.+..++...|++++|...+++.... + ..++ ..++. ..+.. .++.+.+.+.++....+.|.
T Consensus 91 ~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~ 170 (472)
T 4g1t_A 91 IRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK 170 (472)
T ss_dssp TTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC
Confidence 345678999999999999999999999876531 1 1222 22331 11222 23455666666666666665
Q ss_pred CCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhc---cCchhHHHHHHHHHHhcCCccCH
Q 046547 96 SRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLER---RCQSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 96 ~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~---~~~~~~a~~~~~~m~~~g~~~~~ 171 (343)
.|+....-..+...+...++.++|++.+++..+.. |+ ...+..+...+... .++.++|.+.+++..... +.+.
T Consensus 171 ~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~--p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~ 247 (472)
T 4g1t_A 171 NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN--PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVT 247 (472)
T ss_dssp CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC--SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCH
T ss_pred CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC--CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHH
Confidence 44322211222123456678889999999988744 43 34444433333322 245778999999887653 4456
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc-------------------CCChhHHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST-------------------ARKTNDAVEMMKEM 232 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-------------------~~~~~~a~~~~~~m 232 (343)
.++..+...|...|++++|...|++..+.. +-+..++..+...|.. .+..+.|...++..
T Consensus 248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 326 (472)
T 4g1t_A 248 DVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKA 326 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 778889999999999999999999988753 2245556655554432 12356778888887
Q ss_pred HhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh--hHHHHHH-HHHhcccHhHHHHHHHHHhHCC--
Q 046547 233 VLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ--GYEVVVE-GCLECREYILAGKTVMGMTERG-- 307 (343)
Q Consensus 233 ~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~g-- 307 (343)
.+ --+.+..++..+...+...|++++|.+.|++..+....|... .+..+.. .+...|++++|+..|.+..+..
T Consensus 327 ~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~ 404 (472)
T 4g1t_A 327 DE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQK 404 (472)
T ss_dssp HH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCC
T ss_pred hh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcc
Confidence 75 234456678899999999999999999999988754433221 1222222 2457889999999888765432
Q ss_pred ---------------------CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 308 ---------------------FIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 308 ---------------------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
-+.+..+|..+...|...|++++|++.|++..++.
T Consensus 405 ~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 405 SREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 12356788999999999999999999999987764
No 51
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.39 E-value=4.6e-09 Score=95.30 Aligned_cols=210 Identities=11% Similarity=-0.007 Sum_probs=124.5
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHh---ccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHc----cC
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLE---RRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCA----ID 185 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~----~~ 185 (343)
.++.++|.+.|++..+.| +...+..+-..|.. ..++.++|..+|++..+.| +...+..+-..|.. .+
T Consensus 200 ~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~ 273 (490)
T 2xm6_A 200 ERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAK 273 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSC
T ss_pred CcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCC
Confidence 455555555555555443 22333333333332 1234556666666655543 23344444444544 56
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC-----CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc---c
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA-----RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---E 257 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~---~ 257 (343)
+.++|.+.|++..+.| +...+..+-..|... ++.++|+.+|+...+. + +...+..+-..|...| +
T Consensus 274 d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~ 346 (490)
T 2xm6_A 274 EPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANLGAIYFRLGSEEE 346 (490)
T ss_dssp CHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHH
T ss_pred CHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHHHHHHHhCCCccc
Confidence 6666666666665543 233444555555554 6777777777776652 3 3345555555665544 6
Q ss_pred HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCChh
Q 046547 258 MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE----CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAG----VGEWK 329 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~ 329 (343)
.++|.+.|++..+.| +...+..|-..|.. .+++++|.+.|++..+.| +...+..|...|.. .++.+
T Consensus 347 ~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~ 420 (490)
T 2xm6_A 347 HKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYV 420 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHH
Confidence 777777777777653 44566666666666 677888888888877765 45566667777776 67888
Q ss_pred HHHHHHHHHHhh
Q 046547 330 LATVVRQRFAEL 341 (343)
Q Consensus 330 ~a~~~~~~m~~~ 341 (343)
+|.+.|++..+.
T Consensus 421 ~A~~~~~~A~~~ 432 (490)
T 2xm6_A 421 QAWAWFDTASTN 432 (490)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHC
Confidence 888888776654
No 52
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.38 E-value=1.4e-11 Score=108.92 Aligned_cols=240 Identities=10% Similarity=-0.084 Sum_probs=171.4
Q ss_pred hHHHHHHHHhhcCCChHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhc----C-CccC
Q 046547 101 AYDYLLSYTLQSLHPLPLALAILQRTLRS----GCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI----G-YHPD 170 (343)
Q Consensus 101 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~ 170 (343)
.|..+-. ++...|++++|...+++..+. +-.| ....+..+-..+...+ ++++|...+++..+. + ....
T Consensus 88 ~~~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~ 165 (411)
T 4a1s_A 88 IYSQLGN-AYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMG-RFDEAAICCERHLTLARQLGDRLSE 165 (411)
T ss_dssp HHHHHHH-HHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHhhchHHH
Confidence 4444443 566779999999999887643 2122 2344555555666654 689999988877543 1 1223
Q ss_pred HhhHHHHHHHHHccCc-----------------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQ-----------------LVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEM 228 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 228 (343)
..++..+...|...|+ +++|.+.+++..+. +..+ ...++..+...+...|++++|...
T Consensus 166 ~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 245 (411)
T 4a1s_A 166 GRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEH 245 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHH
Confidence 4578888888999999 99999888876542 1111 235788888999999999999999
Q ss_pred HHHHHhcCCCCCc----hhHHHHHHHHHHhCccHHHHHHHHHHHHHcC--CC---CchhhHHHHHHHHHhcccHhHHHHH
Q 046547 229 MKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKG--CP---IGFQGYEVVVEGCLECREYILAGKT 299 (343)
Q Consensus 229 ~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~---p~~~~~~~li~~~~~~g~~~~a~~~ 299 (343)
+++......-.++ ..++..+...|...|++++|...+++..+.. .. ....++..+...|...|++++|...
T Consensus 246 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 325 (411)
T 4a1s_A 246 HQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEY 325 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 9987742000111 2378888999999999999999999876531 11 1145677888889999999999999
Q ss_pred HHHHhHC----CCC-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 300 VMGMTER----GFI-PYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 300 ~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+++..+. +.. ....++..+...|...|++++|.+.+++..++.
T Consensus 326 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 373 (411)
T 4a1s_A 326 HNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 9987653 111 124578888999999999999999999987653
No 53
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.37 E-value=4.7e-11 Score=107.90 Aligned_cols=212 Identities=11% Similarity=-0.059 Sum_probs=132.6
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCch-hHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHH
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQS-QSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVL 194 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~-~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 194 (343)
++++++.+++..... ..+...+..+-..+... +++ ++|.+.|++..+.. +-+...|..+...|.+.|++++|.+.|
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~-g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~ 160 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVT-PDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCF 160 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSS-SSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhc-cccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 555566666544422 12344444444444444 356 77777777766542 223566777777777777777777777
Q ss_pred HHhhhCCCCCCHhhHHHHHHHHhcC---------CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC--------cc
Q 046547 195 KGMSSAECVPDLESYSIVIGAMSTA---------RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN--------RE 257 (343)
Q Consensus 195 ~~m~~~~~~~~~~~~~~ll~~~~~~---------~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--------~~ 257 (343)
++..+.. |+..++..+...+... |++++|+..|++..+. -+-+...|..+..+|... |+
T Consensus 161 ~~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~ 236 (474)
T 4abn_A 161 SGALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKI 236 (474)
T ss_dssp HHHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccch
Confidence 7776643 5556666777777777 7777777777776642 233456667777777666 77
Q ss_pred HHHHHHHHHHHHHcCCCC----chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 258 MWKAVEMIEFLERKGCPI----GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+++|.+.|++..+. .| +...|..+-..|...|++++|.+.|++..+.. +-+...+..+...+...|++++|.+
T Consensus 237 ~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~ 313 (474)
T 4abn_A 237 SQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLE 313 (474)
T ss_dssp HHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777776663 33 45566667777777777777777777766543 2245566666677777777777766
Q ss_pred HHHH
Q 046547 334 VRQR 337 (343)
Q Consensus 334 ~~~~ 337 (343)
.+.+
T Consensus 314 ~~~~ 317 (474)
T 4abn_A 314 SKGK 317 (474)
T ss_dssp HTTT
T ss_pred Hhcc
Confidence 5433
No 54
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.36 E-value=5.8e-11 Score=104.20 Aligned_cols=230 Identities=9% Similarity=-0.040 Sum_probs=169.8
Q ss_pred HhhcCCChHHHHHHHHHHHhc----CCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhc----C--CccCHhhHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRS----GCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSI----G--YHPDCGTCNYL 177 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g--~~~~~~~~~~l 177 (343)
.+...|++++|...+++..+. +-.+ ...++..+-..+...+ ++++|...+++..+. + ......+++.+
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 190 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMK-QTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLF 190 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence 456779999999999998763 2122 2345566666666654 799999988887643 1 11124578888
Q ss_pred HHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHh---cCCC-CCchhHHHHH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVL---NMGL-MPRQGMVIKV 248 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~-~p~~~~~~~l 248 (343)
-..|...|++++|...|++..+. +..+ ...++..+...|...|++++|++.+++... +.+. +....++..+
T Consensus 191 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 270 (383)
T 3ulq_A 191 ATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLI 270 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHH
Confidence 89999999999999999887643 2111 134788899999999999999999998775 1133 3346778999
Q ss_pred HHHHHhCccHHHHHHHHHHHHHc----CCCCchhhHHHHHHHHHhccc---HhHHHHHHHHHhHCCCCC-CHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLERK----GCPIGFQGYEVVVEGCLECRE---YILAGKTVMGMTERGFIP-YIKVRQKVVE 320 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~g~~p-~~~~~~~li~ 320 (343)
...+.+.|++++|...+++..+. +-+.....+..+-..|...|+ +++|+.++++. +..| ....+..+..
T Consensus 271 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~ 347 (383)
T 3ulq_A 271 TQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAK 347 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHH
Confidence 99999999999999999987653 111122345667777888888 77788887765 3333 3456778999
Q ss_pred HHhccCChhHHHHHHHHHHhhc
Q 046547 321 GLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 321 ~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.|...|++++|.+.+++..+++
T Consensus 348 ~y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 348 YYHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999988764
No 55
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.36 E-value=2.8e-11 Score=106.55 Aligned_cols=278 Identities=12% Similarity=-0.066 Sum_probs=170.3
Q ss_pred CHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCC--hhhHHHHHH
Q 046547 30 SLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP--KIAYDYLLS 107 (343)
Q Consensus 30 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~ 107 (343)
+...+...-..+.+.|++++|...|++....+ +..|. ...+..+-.
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--------------------------------~~~~~~~~~~~~~l~~ 55 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--------------------------------TEDLKTLSAIYSQLGN 55 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------------------CSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--------------------------------cccHHHHHHHHHHHHH
Confidence 44555666667777777777777777665431 11111 123444443
Q ss_pred HHhhcCCChHHHHHHHHHHHhc----CCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC-----ccCHhhHHHH
Q 046547 108 YTLQSLHPLPLALAILQRTLRS----GCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGY-----HPDCGTCNYL 177 (343)
Q Consensus 108 ~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~-----~~~~~~~~~l 177 (343)
++...|++++|...+++..+. +-.|. ..++..+-..+...| ++++|...+++..+... .....++..+
T Consensus 56 -~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 133 (406)
T 3sf4_A 56 -AYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNL 133 (406)
T ss_dssp -HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -HHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHhcccccchHHHHHHH
Confidence 555667888888877775432 21222 233444444555544 57788877776654210 1113466777
Q ss_pred HHHHHccCc--------------------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHH
Q 046547 178 VSSLCAIDQ--------------------LVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEM 232 (343)
Q Consensus 178 l~~~~~~~~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m 232 (343)
...|...|+ +++|.+.+++..+. +..| ...++..+...+...|++++|...+++.
T Consensus 134 ~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 213 (406)
T 3sf4_A 134 GNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQR 213 (406)
T ss_dssp HHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHH
T ss_pred HHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 777777888 78887777765431 2111 1346777777788888888888888776
Q ss_pred HhcCCCCCc----hhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 233 VLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERK----GCPIG-FQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 233 ~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
.....-.++ ..++..+...+...|++++|...+++..+. +-.+. ..++..+...|...|++++|...+++.
T Consensus 214 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 293 (406)
T 3sf4_A 214 LLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 293 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 631000111 236777777888888888888888876542 11111 346667777788888888888888776
Q ss_pred hHC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 304 TER----GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 304 ~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.+. +-.+ ...++..+...|...|++++|.+.+++..++
T Consensus 294 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 294 LAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 543 1111 1456777778888888888888888876654
No 56
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=1e-10 Score=98.97 Aligned_cols=233 Identities=9% Similarity=-0.024 Sum_probs=150.9
Q ss_pred hhhhhhcccchHHHHHHHHhcCCCC-----CCCC-hhhHHHHHHHHhhcCCChHHHHHHHHHHHhc------CCCc-cHH
Q 046547 70 LSNFPQNHRIKVIDEMLESFIPLRP-----RSRP-KIAYDYLLSYTLQSLHPLPLALAILQRTLRS------GCVP-VPQ 136 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~ 136 (343)
...+...|+.+.+...++....+.. ..|. ...+..+-. ++...|++++|...+++..+. +-.| ...
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 112 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAA 112 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHH
Confidence 3455677788888888887765311 1222 345555554 777889999999999998764 2233 345
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHhc------CC-ccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC------CCC
Q 046547 137 IRLLLSSAWLERRCQSQSVADILLEMKSI------GY-HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA------ECV 203 (343)
Q Consensus 137 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~ 203 (343)
++..+...+...+ ++++|...+++..+. +- ......+..+...+...|++++|.++|++..+. +..
T Consensus 113 ~~~~l~~~~~~~g-~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 191 (311)
T 3nf1_A 113 TLNNLAVLYGKRG-KYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD 191 (311)
T ss_dssp HHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred HHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 5666666666654 799999999988764 22 224567888889999999999999999998764 223
Q ss_pred C-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcC------CCCCchhHH-------HHHHHHHHhCccHHHHHHHHHHHH
Q 046547 204 P-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNM------GLMPRQGMV-------IKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 204 ~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~~~p~~~~~-------~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
| ...++..+...+...|++++|...+++..... ...+..... ..+...+...+.+.++...+....
T Consensus 192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 271 (311)
T 3nf1_A 192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK 271 (311)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence 3 34578889999999999999999999988520 122222222 222222233334444455555544
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.. ...+..++..+...|.+.|++++|.+.|++..+
T Consensus 272 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 272 VD-SPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ---CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CC-CchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 32 122455788889999999999999999998765
No 57
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.35 E-value=9.7e-11 Score=91.02 Aligned_cols=165 Identities=12% Similarity=-0.020 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
..|..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|...+++.... .+.+...+..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~ 85 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLT 85 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHH
Confidence 345555566666677777777776665432 234556666666677777777777777776642 23345566666667
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 331 (343)
+...|++++|.+.+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A 163 (186)
T 3as5_A 86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA 163 (186)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777666542 2244556666666777777777777777766553 23456666777777777777777
Q ss_pred HHHHHHHHhh
Q 046547 332 TVVRQRFAEL 341 (343)
Q Consensus 332 ~~~~~~m~~~ 341 (343)
.+.+++..++
T Consensus 164 ~~~~~~~~~~ 173 (186)
T 3as5_A 164 LPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 7777766554
No 58
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.35 E-value=1.9e-11 Score=104.48 Aligned_cols=276 Identities=12% Similarity=-0.049 Sum_probs=189.3
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCC--hhhHHHHHHHHh
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP--KIAYDYLLSYTL 110 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~--~~~~~~li~~~~ 110 (343)
.+...-..+...|++++|...|++.... .+..|. ...+..+-. ++
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--------------------------------~~~~~~~~~~~~~~l~~-~~ 53 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQV--------------------------------GTEDLKTLSAIYSQLGN-AY 53 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--------------------------------CCSCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhh--------------------------------CcccHHHHHHHHHHHHH-HH
Confidence 3444455666677777777777765542 111111 234444444 56
Q ss_pred hcCCChHHHHHHHHHHHhc----CCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC----c-cCHhhHHHHHHH
Q 046547 111 QSLHPLPLALAILQRTLRS----GCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGY----H-PDCGTCNYLVSS 180 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~----~-~~~~~~~~ll~~ 180 (343)
...|++++|...+++..+. +-.|. ..++..+-..+...+ ++++|...+++..+... . ....++..+...
T Consensus 54 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~ 132 (338)
T 3ro2_A 54 FYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLG-NFDEAIVCCQRHLDISRELNDKVGEARALYNLGNV 132 (338)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHH
Confidence 6779999999999886542 22222 344555656666655 69999998888754311 1 113477888888
Q ss_pred HHccCc--------------------HHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 181 LCAIDQ--------------------LVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 181 ~~~~~~--------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
+...|+ +++|.+.+++.... +..| ...++..+...+...|++++|...+++....
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 212 (338)
T 3ro2_A 133 YHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLI 212 (338)
T ss_dssp HHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 899999 99999888876532 2111 2456788888999999999999999987642
Q ss_pred C---CC-CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 236 M---GL-MPRQGMVIKVAAALRANREMWKAVEMIEFLERK----GCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 236 ~---~~-~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
. +. .....++..+...+...|++++|...+++..+. +-.+ ...++..+...|...|++++|...+++..+.
T Consensus 213 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 213 AKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 0 11 112347888889999999999999999987642 1111 1446777888899999999999999987653
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 307 ----GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 307 ----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+-.+ ...++..+...|.+.|++++|.+.+++..++.
T Consensus 293 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 333 (338)
T 3ro2_A 293 AQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 333 (338)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC-
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Confidence 2111 24578889999999999999999999988753
No 59
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.34 E-value=2.9e-10 Score=94.46 Aligned_cols=214 Identities=9% Similarity=-0.099 Sum_probs=152.8
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccH--HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP--QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 177 (343)
..+..+.. ++...|++++|+..+++..+.+-.|+. ..|..+-..+...+ ++++|.+.++...+.. +.+..++..+
T Consensus 38 ~~~~~l~~-~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~-~~~~A~~~~~~a~~~~-~~~~~~~~~l 114 (272)
T 3u4t_A 38 YIYNRRAV-CYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG-QDSLAIQQYQAAVDRD-TTRLDMYGQI 114 (272)
T ss_dssp TTHHHHHH-HHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHS-TTCTHHHHHH
T ss_pred HHHHHHHH-HHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHhcC-cccHHHHHHH
Confidence 35555554 667789999999999998874422222 23666666666665 6999999999988753 3355788889
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
...|...|++++|.+.|++..+.. +.+..++..+...+...+++++|...|++..+. .+.+...+..+..++...++
T Consensus 115 ~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~~~ 191 (272)
T 3u4t_A 115 GSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL--KPNIYIGYLWRARANAAQDP 191 (272)
T ss_dssp HHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CccchHHHHHHHHHHHHcCc
Confidence 999999999999999999887762 334566666662444456999999999998853 23346677777788887777
Q ss_pred ---HHHHHHHHHHHHHcC-CCCc------hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHH
Q 046547 258 ---MWKAVEMIEFLERKG-CPIG------FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVE 320 (343)
Q Consensus 258 ---~~~a~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 320 (343)
.++|...+++..+.. -.|+ ..+|..+-..|...|++++|.+.|++..+.. +-+......+-.
T Consensus 192 ~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~ 263 (272)
T 3u4t_A 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD-PTNKKAIDGLKM 263 (272)
T ss_dssp TCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHC-
T ss_pred chhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-ccHHHHHHHhhh
Confidence 777888888876531 1233 2467778888999999999999999988764 224444444433
No 60
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.34 E-value=4.6e-11 Score=99.53 Aligned_cols=230 Identities=10% Similarity=-0.020 Sum_probs=155.9
Q ss_pred hcCCChHHHHHHHHHHHhc-------CCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc------CC-ccCHhhHHH
Q 046547 111 QSLHPLPLALAILQRTLRS-------GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI------GY-HPDCGTCNY 176 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~-------~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~------g~-~~~~~~~~~ 176 (343)
...|++++|+..+++..+. ..+....++..+-..+...+ ++++|...+++..+. +- +....++..
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQN-KYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcc-cHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3457788888888876542 11223455666666666665 799999999988754 22 234567889
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhC------C-CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc----C-C-CCCchh
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSA------E-CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN----M-G-LMPRQG 243 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~------~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~-~-~~p~~~ 243 (343)
+...|...|++++|.+.|++..+. . .+....++..+...+...|++++|...+++.... . + .+....
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 999999999999999999998764 1 1234677889999999999999999999998852 0 1 222456
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHc-------CCCCchhhH-HHHHHHHHhccc------HhHHHHHHHHHhHCCCC
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERK-------GCPIGFQGY-EVVVEGCLECRE------YILAGKTVMGMTERGFI 309 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~-------g~~p~~~~~-~~li~~~~~~g~------~~~a~~~~~~m~~~g~~ 309 (343)
++..+...|...|++++|...+++..+. ...+....+ ..+...+...+. +..+...++.... ...
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 249 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP 249 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence 7889999999999999999999988753 223333333 333323333222 2222222222111 112
Q ss_pred CCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 310 PYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 310 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
....++..+...|...|++++|.+++++..+.+
T Consensus 250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 245678889999999999999999999987764
No 61
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.33 E-value=2.1e-09 Score=96.73 Aligned_cols=310 Identities=11% Similarity=-0.036 Sum_probs=197.4
Q ss_pred cCCCCHHHHHHHHHHHhCccCcchHHHHHHHchhc-------CCCCCh-HHH---hhhhhhcccchHHHHHHHHhcCCC-
Q 046547 26 RSMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEA-------CQNPNP-FSF---LSNFPQNHRIKVIDEMLESFIPLR- 93 (343)
Q Consensus 26 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~-~~~---~~~~~~~~~~~~~~~~~~~~~~~~- 93 (343)
........|+.+-..+...|++++|++.|++..+. ...|+. .+| ..++...|+.+.+...++....+.
T Consensus 46 ~~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 46 NREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp C---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 33344567999999999999999999999875431 113433 344 234556677666655555443221
Q ss_pred ----CCCCC-hhhHHHHHH-HHhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHH--hccCchhHHHHHHHHHHh
Q 046547 94 ----PRSRP-KIAYDYLLS-YTLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWL--ERRCQSQSVADILLEMKS 164 (343)
Q Consensus 94 ----~~~p~-~~~~~~li~-~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~--~~~~~~~~a~~~~~~m~~ 164 (343)
+..++ ..+++..-. ......+++++|+..|++..+.. |+... +..+...+. ...++.++|++.+++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~--p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~ 203 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK--PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIR 203 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhh
Confidence 11222 234433221 11223467999999999998743 55433 333322222 222356788988888876
Q ss_pred cCCccCHhhHHHHHHHHHc----cCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC
Q 046547 165 IGYHPDCGTCNYLVSSLCA----IDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP 240 (343)
Q Consensus 165 ~g~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p 240 (343)
.. +.+..++..+...+.. .|++++|.+++++..... +.+..++..+...|...|++++|...+++..+. .+-
T Consensus 204 l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 279 (472)
T 4g1t_A 204 LN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEY--IPN 279 (472)
T ss_dssp HC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STT
T ss_pred cC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHh--CCC
Confidence 53 2344555555555444 467889999999887654 345778889999999999999999999999853 333
Q ss_pred chhHHHHHHHHHHhC-------------------ccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHH
Q 046547 241 RQGMVIKVAAALRAN-------------------REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 241 ~~~~~~~li~~~~~~-------------------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (343)
+..++..+-.+|... +..+.|...++...+.. +.+..++..+-..|...|++++|.+.|+
T Consensus 280 ~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~ 358 (472)
T 4g1t_A 280 NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQ 358 (472)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHHHHHHHHH
Confidence 455666665555322 34567788888777643 2345678888899999999999999999
Q ss_pred HHhHCCCCCCHH--HHHHHHH-HHhccCChhHHHHHHHHHHhhc
Q 046547 302 GMTERGFIPYIK--VRQKVVE-GLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 302 ~m~~~g~~p~~~--~~~~li~-~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+..+....|... .+..+.. .+...|++++|++.|++..++.
T Consensus 359 kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~ 402 (472)
T 4g1t_A 359 KEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKIN 402 (472)
T ss_dssp HHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSC
T ss_pred HHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 998876444321 2222222 3457899999999999887654
No 62
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.31 E-value=5.2e-10 Score=97.99 Aligned_cols=312 Identities=9% Similarity=-0.021 Sum_probs=201.1
Q ss_pred CCCCHHHHHHHHHHH--hCccCcchHHHHHHHchh--cCCCCChH--HHhhhhhh-----cccchH---------HHHHH
Q 046547 27 SMSSLRTLEETVRAA--VDAKDYQQIPELLGSFEE--ACQNPNPF--SFLSNFPQ-----NHRIKV---------IDEML 86 (343)
Q Consensus 27 ~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~--~~~~p~~~--~~~~~~~~-----~~~~~~---------~~~~~ 86 (343)
.+|+..+-+.+-..+ .+.+++++|.+++++... .....+.. .|-.++.- .+.... +.+.+
T Consensus 6 ~~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l 85 (378)
T 3q15_A 6 AIPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85 (378)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHH
Confidence 345555555555555 678999999999998764 22223333 22111110 011111 11333
Q ss_pred HHhcCCCCCCCChhh--HHHHHHHHhhcCCChHHHHHHHHHHHhcCC-Ccc----HHHHHHHHHHHHhccCchhHHHHHH
Q 046547 87 ESFIPLRPRSRPKIA--YDYLLSYTLQSLHPLPLALAILQRTLRSGC-VPV----PQIRLLLSSAWLERRCQSQSVADIL 159 (343)
Q Consensus 87 ~~~~~~~~~~p~~~~--~~~li~~~~~~~~~~~~a~~~~~~m~~~~~-~p~----~~~~~~li~~~~~~~~~~~~a~~~~ 159 (343)
+..........+... |.......+...|++++|+..|++..+... .++ ..++..+-..+...+ ++++|...+
T Consensus 86 ~~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~-~~~~A~~~~ 164 (378)
T 3q15_A 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMK-QTHVSMYHI 164 (378)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred HHHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcC-CcHHHHHHH
Confidence 333221110001111 222222344567999999999999875321 122 234555555666655 799999988
Q ss_pred HHHHhc----C-Ccc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHH
Q 046547 160 LEMKSI----G-YHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEM 228 (343)
Q Consensus 160 ~~m~~~----g-~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~ 228 (343)
++..+. + ..+ ...+++.+-..|...|++++|.+.|++..+. +..+ ...++..+-..|...|++++|++.
T Consensus 165 ~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~ 244 (378)
T 3q15_A 165 LQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEH 244 (378)
T ss_dssp HHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 877542 1 121 2457888889999999999999999887652 2111 245788889999999999999999
Q ss_pred HHHHHh---cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC----CCchhhHHHHHHHHHhccc---HhHHHH
Q 046547 229 MKEMVL---NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC----PIGFQGYEVVVEGCLECRE---YILAGK 298 (343)
Q Consensus 229 ~~~m~~---~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~----~p~~~~~~~li~~~~~~g~---~~~a~~ 298 (343)
+++... +.+.+....++..+...+.+.|++++|...+++..+..- +.....+..+-..|...|+ +.+|+.
T Consensus 245 ~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~ 324 (378)
T 3q15_A 245 FQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLS 324 (378)
T ss_dssp HHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 998875 012233467788899999999999999999999876421 1123345566666777888 777887
Q ss_pred HHHHHhHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 299 TVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 299 ~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
++++ .+..| ....+..+...|...|++++|.+.|++..+.+
T Consensus 325 ~~~~---~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~ 366 (378)
T 3q15_A 325 YFEK---KNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366 (378)
T ss_dssp HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHh---CCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 7776 33333 34567788899999999999999999987653
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.30 E-value=1.1e-10 Score=102.60 Aligned_cols=266 Identities=14% Similarity=-0.009 Sum_probs=181.0
Q ss_pred HHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCC-hhhHHHHHHHHh
Q 046547 32 RTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRP-KIAYDYLLSYTL 110 (343)
Q Consensus 32 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~li~~~~ 110 (343)
..+..+...+...|+++.|.+.+++.... .+.. +..|. ...+..+-. ++
T Consensus 48 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------------~~~~----~~~~~~~~~~~~la~-~~ 97 (406)
T 3sf4_A 48 AIYSQLGNAYFYLHDYAKALEYHHHDLTL-------------------------ARTI----GDQLGEAKASGNLGN-TL 97 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------------HHHT----TCHHHHHHHHHHHHH-HH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH-------------------------HHhc----cccHHHHHHHHHHHH-HH
Confidence 56777777888888888888888765421 1110 11111 234444443 66
Q ss_pred hcCCChHHHHHHHHHHHhcC----CCc-cHHHHHHHHHHHHhccCc--------------------hhHHHHHHHHHHhc
Q 046547 111 QSLHPLPLALAILQRTLRSG----CVP-VPQIRLLLSSAWLERRCQ--------------------SQSVADILLEMKSI 165 (343)
Q Consensus 111 ~~~~~~~~a~~~~~~m~~~~----~~p-~~~~~~~li~~~~~~~~~--------------------~~~a~~~~~~m~~~ 165 (343)
...|++++|...+++..+.. -.+ ...++..+-..+...+ + +++|.+.+++..+.
T Consensus 98 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~ 176 (406)
T 3sf4_A 98 KVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKG-KSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSL 176 (406)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHH-HTCC-------CCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcC-CcccccccchhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 77899999999999876421 111 1235555555655554 6 78888888776432
Q ss_pred ----CCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHhcCCChhHHHHHHHHHHhc
Q 046547 166 ----GYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC-VPD----LESYSIVIGAMSTARKTNDAVEMMKEMVLN 235 (343)
Q Consensus 166 ----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~ 235 (343)
+-.| ...++..+...|...|++++|...+++..+... .++ ..++..+...+...|++++|...+++....
T Consensus 177 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 256 (406)
T 3sf4_A 177 VTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLL 256 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 2122 245688888899999999999999998764310 111 347888899999999999999999987642
Q ss_pred ---CCCCCc-hhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 236 ---MGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERK----GCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 236 ---~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.+..+. ..++..+...|...|++++|...+++..+. +-.+. ..++..+...|...|++++|.+.+++..+.
T Consensus 257 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 336 (406)
T 3sf4_A 257 ARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 336 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 111111 567888999999999999999999987653 11111 446778888899999999999999987543
Q ss_pred ----CCCC-CHHHHHHHHHHHhccCCh
Q 046547 307 ----GFIP-YIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 307 ----g~~p-~~~~~~~li~~~~~~g~~ 328 (343)
|..+ ...++..+...+...|+.
T Consensus 337 ~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 337 SREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 2222 355677788888888766
No 64
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.29 E-value=4.7e-09 Score=102.53 Aligned_cols=254 Identities=11% Similarity=0.068 Sum_probs=156.6
Q ss_pred HHHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCCh
Q 046547 37 TVRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPL 116 (343)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~ 116 (343)
+...+...|++++|..+|++... ........+...++ ++++.+...+. -+..+|..+-. ++.+.|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLie~i~n---ldrAiE~Aerv----n~p~vWsqLAK-Aql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFDV-----NTSAVQVLIEHIGN---LDRAYEFAERC----NEPAVWSQLAK-AQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHHHHHhh---HHHHHHHHHhc----CCHHHHHHHHH-HHHhCCCH
Confidence 45566777888888888887521 11111122223333 34444433222 13456666665 66677888
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKG 196 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 196 (343)
++|.+.|.+. -|...|.-++.++.+.| ++++|.++|....+.. +++...+.+..+|++.+++++.....
T Consensus 1122 kEAIdsYiKA------dD~say~eVa~~~~~lG-kyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A 1122 KEAIDSYIKA------DDPSSYMEVVQAANTSG-NWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred HHHHHHHHhc------CChHHHHHHHHHHHHcC-CHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence 8888888553 35556666777665554 6888888887666543 33333445777778877777533332
Q ss_pred hhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 197 MSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 197 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
+ .++...|..+-..|...|++++|..+|... ..|..+..+|++.|++++|.+.+++. .+
T Consensus 1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA------~n 1249 (1630)
T 1xi4_A 1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA------NS 1249 (1630)
T ss_pred --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh------CC
Confidence 2 245556666777777888888888888774 25777888888888888888777755 23
Q ss_pred hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 277 FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 277 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
..+|.-+-.+|...|++..|....-. +..+...+..++..|.+.|.+++|+++++.-..
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 45666666666666666666654432 333455566677777777777777777765543
No 65
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=2.6e-09 Score=90.74 Aligned_cols=183 Identities=9% Similarity=-0.043 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-Hh-hHHHHHHHHHccCcHHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-CG-TCNYLVSSLCAIDQLVEAAKV 193 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~-~~~~ll~~~~~~~~~~~a~~~ 193 (343)
++|..+|++..+. +.|+ ...|..+...+...+ ++++|.++|++..+. .|+ .. .|..+...+.+.|++++|.++
T Consensus 81 ~~A~~~~~rAl~~-~~p~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~ 156 (308)
T 2ond_A 81 DEAANIYERAIST-LLKKNMLLYFAYADYEESRM-KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMI 156 (308)
T ss_dssp HHHHHHHHHHHTT-TTTTCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHHHHHHH-hCcccHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHH
Confidence 7888888888763 2343 345666666655554 688888888888763 443 33 677788888888888888888
Q ss_pred HHHhhhCCCCCCHhhHHHHHHHH-hcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 194 LKGMSSAECVPDLESYSIVIGAM-STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 194 ~~~m~~~~~~~~~~~~~~ll~~~-~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
|++..+... ++...|....... ...|+.++|..+|+...+. .+-+...|..++..+.+.|+.++|..+|++..+..
T Consensus 157 ~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~ 233 (308)
T 2ond_A 157 FKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSG 233 (308)
T ss_dssp HHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSS
T ss_pred HHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcc
Confidence 888876532 2334443332222 2368888888888887752 23356777888888888888888888888888753
Q ss_pred -CCCc--hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 273 -CPIG--FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 273 -~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+.|+ ...|..++..+.+.|+.+.|..+++++.+.
T Consensus 234 ~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 234 SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp SSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4553 446777777788888888888888887764
No 66
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.27 E-value=1.3e-08 Score=93.21 Aligned_cols=219 Identities=9% Similarity=-0.050 Sum_probs=165.4
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHh------ccCchh-------HHHHHHHHHHhcCCccCHhhHHHHHHHHHc
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLE------RRCQSQ-------SVADILLEMKSIGYHPDCGTCNYLVSSLCA 183 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~------~~~~~~-------~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~ 183 (343)
+.+..+|++..... +-+...|......+.+ ..++++ +|..++++..+.-.+-+...|..+...+.+
T Consensus 255 ~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~ 333 (530)
T 2ooe_A 255 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 37788999988743 2345666666655543 134565 899999998763233457888999999999
Q ss_pred cCcHHHHHHHHHHhhhCCCCCC--HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH-HHhCccHHH
Q 046547 184 IDQLVEAAKVLKGMSSAECVPD--LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA-LRANREMWK 260 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~~~ 260 (343)
.|++++|..+|++..+. .|+ ...|......+.+.|+.++|..+|+...+. .+.+...|...... +...|+.++
T Consensus 334 ~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~ 409 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 409 (530)
T ss_dssp TTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHH
T ss_pred cCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHHHHHHHHHcCChhH
Confidence 99999999999999985 454 257888888888999999999999999853 22233333322222 336899999
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC-CCCC--HHHHHHHHHHHhccCChhHHHHHHHH
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG-FIPY--IKVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
|..+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+ ..|+ ...|...+......|+.+.+.+++.+
T Consensus 410 A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r 488 (530)
T 2ooe_A 410 AFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 488 (530)
T ss_dssp HHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 999999988742 2246788889999999999999999999998874 2332 45788888888889999999999998
Q ss_pred HHhh
Q 046547 338 FAEL 341 (343)
Q Consensus 338 m~~~ 341 (343)
+.+.
T Consensus 489 ~~~~ 492 (530)
T 2ooe_A 489 RFTA 492 (530)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8764
No 67
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.25 E-value=6.9e-09 Score=101.40 Aligned_cols=261 Identities=14% Similarity=0.054 Sum_probs=168.0
Q ss_pred CCCCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCCh-------HHHhhhhhhcccchHHHHHHHHhcCCCCCCCCh
Q 046547 27 SMSSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNP-------FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPK 99 (343)
Q Consensus 27 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 99 (343)
...+.+......++|...|.+.+|++++++..-. |+. ...+....-..+.+...+.+..+... +
T Consensus 981 e~~~PeeVs~~vKaf~~aglp~EaieLLEKivl~---~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~-----d- 1051 (1630)
T 1xi4_A 981 ETQDPEEVSVTVKAFMTADLPNELIELLEKIVLD---NSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNY-----D- 1051 (1630)
T ss_pred cccCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcC---CCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhc-----c-
Confidence 3446667788999999999999999999988732 331 11111111111334444554443211 1
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVS 179 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~ 179 (343)
..- +...+...|.+++|..+|++.. -.....+.++. .-+++++|.++.++. -+..+|..+-.
T Consensus 1052 --~~e-IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie----~i~nldrAiE~Aerv------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1052 --APD-IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE----HIGNLDRAYEFAERC------NEPAVWSQLAK 1113 (1630)
T ss_pred --HHH-HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH----HHhhHHHHHHHHHhc------CCHHHHHHHHH
Confidence 111 2234556788999999988852 11222233332 233578888877754 23567778888
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
++.+.|++++|.+.|.+. -|...|.-++.++.+.|++++|.+++....+. . ++....+.++.+|++.++++
T Consensus 1114 Aql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~-~--~e~~Idt~LafaYAKl~rle 1184 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIFALAKTNRLA 1184 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-c--ccccccHHHHHHHHhhcCHH
Confidence 888888888888888653 35667777888888888888888888876642 2 44444445788888887777
Q ss_pred HHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 260 KAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
+...+. + .|+...|..+-..|...|++++|..+|... ..|..+...|++.|++++|.+.+++-.
T Consensus 1185 ele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~ 1248 (1630)
T 1xi4_A 1185 ELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN 1248 (1630)
T ss_pred HHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC
Confidence 544332 1 244555666677777788888888877763 367777777777777777777776543
No 68
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.23 E-value=2.8e-09 Score=93.12 Aligned_cols=239 Identities=9% Similarity=-0.007 Sum_probs=174.5
Q ss_pred hhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCC-hHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhc
Q 046547 71 SNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHP-LPLALAILQRTLRSGCVP-VPQIRLLLSSAWLER 148 (343)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~-~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~ 148 (343)
.++...++.+.+.+.++....+.|. +...|+.+-. ++...|+ +++|+..|++..+.. | +...|..+-..+...
T Consensus 105 ~~~~~~g~~~~Al~~~~~al~l~P~--~~~a~~~~g~-~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~ 179 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAIELNAA--NYTVWHFRRV-LLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWL 179 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHHHHCTT--CHHHHHHHHH-HHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCChHHHHHHHHHHHHhCcc--CHHHHHHHHH-HHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHc
Confidence 3444556666666666666655553 3456665554 6667786 999999999998854 4 455666666666665
Q ss_pred cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhc-CCChhHH--
Q 046547 149 RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMST-ARKTNDA-- 225 (343)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a-- 225 (343)
+ ++++|+..|++..+.. +-+...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|..++|
T Consensus 180 g-~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 180 R-DPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp T-CCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred c-CHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 4 6999999999998853 34678899999999999999999999999988643 367888999999998 6666888
Q ss_pred ---HHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc---------
Q 046547 226 ---VEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR--------- 291 (343)
Q Consensus 226 ---~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--------- 291 (343)
+..|+..... -+-+...|+.+...+.+.| +.++|.+.+.++ + .-..+...+..+...|.+.|
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~-~~p~~~~al~~La~~~~~~~~~~~~~~~~ 332 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-Q-PSHSSPYLIAFLVDIYEDMLENQCDNKED 332 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-T-TTCCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-c-cCCCCHHHHHHHHHHHHHHhcccccchHH
Confidence 4788887752 2335677888888888887 689999999887 3 22335567888888888874
Q ss_pred cHhHHHHHHHHH-hHCCCCC-CHHHHHHHHHHHh
Q 046547 292 EYILAGKTVMGM-TERGFIP-YIKVRQKVVEGLA 323 (343)
Q Consensus 292 ~~~~a~~~~~~m-~~~g~~p-~~~~~~~li~~~~ 323 (343)
..++|.++++++ .+. .| ....|..+...+.
T Consensus 333 ~~~~A~~~~~~l~~~~--DP~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 333 ILNKALELCEILAKEK--DTIRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHHHHHHTT--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh--CchhHHHHHHHHHHHH
Confidence 358999999998 544 34 3445555555444
No 69
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.23 E-value=1.9e-10 Score=101.58 Aligned_cols=230 Identities=11% Similarity=-0.003 Sum_probs=173.0
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccH-----HHHHHHHHHHHhccCchhHHHHHHHHHHhc----C-CccCHhhHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVP-----QIRLLLSSAWLERRCQSQSVADILLEMKSI----G-YHPDCGTCNYLV 178 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g-~~~~~~~~~~ll 178 (343)
.+...|++++|...|++..+.+ |+. ..+..+-..+...+ ++++|...+++..+. + .......+..+.
T Consensus 57 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 133 (411)
T 4a1s_A 57 RLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLG-DYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG 133 (411)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence 5667799999999999998864 432 35666666666665 799999999887643 2 123456788888
Q ss_pred HHHHccCcHHHHHHHHHHhhhC----C-CCCCHhhHHHHHHHHhcCCC-----------------hhHHHHHHHHHHhc-
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSA----E-CVPDLESYSIVIGAMSTARK-----------------TNDAVEMMKEMVLN- 235 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~----~-~~~~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~m~~~- 235 (343)
..|...|++++|...+++..+. + ......++..+...|...|+ +++|++.+++...-
T Consensus 134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~ 213 (411)
T 4a1s_A 134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLM 213 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHH
Confidence 9999999999999999987653 1 11234578888899999999 99999998886531
Q ss_pred --CCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC-CCc----hhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 236 --MGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKGC-PIG----FQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 236 --~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.+-.| ...++..+...+...|++++|...+++..+..- .++ ..++..+...|...|++++|.+.+++..+..
T Consensus 214 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 293 (411)
T 4a1s_A 214 RDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALA 293 (411)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHH
Confidence 11112 335788889999999999999999998775311 011 2377788889999999999999999876542
Q ss_pred C----C-CCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 308 F----I-PYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 308 ~----~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
- . ....++..+...|...|++++|.+.+++..++
T Consensus 294 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 332 (411)
T 4a1s_A 294 VELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAI 332 (411)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 1 1 12567888999999999999999999987764
No 70
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.23 E-value=3.8e-09 Score=82.28 Aligned_cols=166 Identities=14% Similarity=0.008 Sum_probs=95.8
Q ss_pred HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 135 PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 135 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
+..|..+-..+...| ++++|.+.|++..+.. +-+..++..+...|.+.|++++|...+........ -+...+..+..
T Consensus 5 ~~iy~~lG~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~ 81 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKG-DFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT-TSAEAYYILGS 81 (184)
T ss_dssp HHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc-hhHHHHHHHHH
Confidence 344555555554443 4666666666665532 22345556666666666666666666666554322 23445555556
Q ss_pred HHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHh
Q 046547 215 AMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI 294 (343)
Q Consensus 215 ~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 294 (343)
.+...++++.|...+.+... -.+.+...+..+-..+.+.|++++|.+.|++..+.. +.+..+|..+-..|.+.|+++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 66666666666666666653 223345556666666666666666666666666532 123445666666666667777
Q ss_pred HHHHHHHHHhHC
Q 046547 295 LAGKTVMGMTER 306 (343)
Q Consensus 295 ~a~~~~~~m~~~ 306 (343)
+|.+.|++..+.
T Consensus 159 ~A~~~~~~al~~ 170 (184)
T 3vtx_A 159 EAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHhC
Confidence 777666666543
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.23 E-value=1.2e-09 Score=88.43 Aligned_cols=197 Identities=10% Similarity=-0.046 Sum_probs=142.1
Q ss_pred ccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHH
Q 046547 133 PVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIV 212 (343)
Q Consensus 133 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l 212 (343)
.|+..+...-..+...+ ++++|...|++..+...+++...+..+..++...|++++|.+.|++..+... -+..+|..+
T Consensus 5 ~~~~~~~~~g~~~~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAK-NYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY-NLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-SHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc-chHHHHHHH
Confidence 34556666666666665 6999999999988875446777777788889999999999999999887542 256778888
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCch-------hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc---hhhHHH
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-------GMVIKVAAALRANREMWKAVEMIEFLERKGCPIG---FQGYEV 282 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~ 282 (343)
...+...|++++|+..+++..+. .+.+. ..|..+-..+...|++++|.+.|++..+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD--VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh--cCCCcccHHHHHH
Confidence 99999999999999999998853 22233 4577777888889999999999998887 4565 345666
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
+-..|...|+ .+++++...+ ..+...|.... ....+.+++|...+++..++.|
T Consensus 159 l~~~~~~~~~-----~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 159 LGVLFYNNGA-----DVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHH-----HHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHH-----HHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCC
Confidence 6666655443 3445554443 22344454443 3445778999999999888764
No 72
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.21 E-value=1.5e-09 Score=98.09 Aligned_cols=186 Identities=9% Similarity=-0.030 Sum_probs=156.3
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH-HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL-VEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~-~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
++++...+++.... .+.+...+..+-..+...|++ ++|.+.|++..+.. +-+...|..+..+|...|++++|...|+
T Consensus 84 ~~~al~~l~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGS-AQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTT-CCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc-CchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 56667777765543 234678888899999999999 99999999998754 2347889999999999999999999999
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhC---------ccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc--------ccH
Q 046547 231 EMVLNMGLMPRQGMVIKVAAALRAN---------REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC--------REY 293 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~--------g~~ 293 (343)
...+ ..|+...+..+...+... |++++|.+.+++..+.. +-+...|..+...|... |++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~ 237 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKIS 237 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchH
Confidence 9985 347778899999999999 99999999999998853 22466888888899988 999
Q ss_pred hHHHHHHHHHhHCCCC--CCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 294 ILAGKTVMGMTERGFI--PYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 294 ~~a~~~~~~m~~~g~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
++|.+.|++..+..-. -+...|..+...|...|++++|.+.|++..++.+
T Consensus 238 ~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p 289 (474)
T 4abn_A 238 QQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP 289 (474)
T ss_dssp HHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999999876411 3788999999999999999999999999887653
No 73
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.21 E-value=3.6e-10 Score=94.09 Aligned_cols=224 Identities=10% Similarity=-0.029 Sum_probs=145.0
Q ss_pred chHHHHHHHHhcCCCC-CCCC-hhhHHHHHHHHhhcCCChHHHHHHHHHHHhc------CCCc-cHHHHHHHHHHHHhcc
Q 046547 79 IKVIDEMLESFIPLRP-RSRP-KIAYDYLLSYTLQSLHPLPLALAILQRTLRS------GCVP-VPQIRLLLSSAWLERR 149 (343)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~~ 149 (343)
...++++++.+.+..+ ..|+ ...+..+-. ++...|++++|+..+++..+. +-.| ...++..+-..+...+
T Consensus 21 ~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 99 (283)
T 3edt_B 21 VPLCKQALEDLEKTSGHDHPDVATMLNILAL-VYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRG 99 (283)
T ss_dssp HHHHHHHHHHHHHHHCSSSHHHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH-HHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhc
Confidence 3445555555443322 2233 455666664 777889999999999998754 2233 3445666666766665
Q ss_pred CchhHHHHHHHHHHhcC-------CccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhC------CCCC-CHhhHHHHHHH
Q 046547 150 CQSQSVADILLEMKSIG-------YHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA------ECVP-DLESYSIVIGA 215 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g-------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~ 215 (343)
++++|.+.+++..+.. .+....++..+...|...|++++|...|++..+. +..| ...++..+...
T Consensus 100 -~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~ 178 (283)
T 3edt_B 100 -KYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASC 178 (283)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 7999999999887641 1234677888999999999999999999998764 2123 35678899999
Q ss_pred HhcCCChhHHHHHHHHHHhc------CCCCCch-hHHHHHHHHHHhCcc------HHHHHHHHHHHHHcCCCCchhhHHH
Q 046547 216 MSTARKTNDAVEMMKEMVLN------MGLMPRQ-GMVIKVAAALRANRE------MWKAVEMIEFLERKGCPIGFQGYEV 282 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~------~~~~p~~-~~~~~li~~~~~~~~------~~~a~~~~~~m~~~g~~p~~~~~~~ 282 (343)
+...|++++|...+++.... ....+.. ..+..+...+...+. +..+...++.... .......++..
T Consensus 179 ~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 257 (283)
T 3edt_B 179 YLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTVNTTLRS 257 (283)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHHHHHHHH
Confidence 99999999999999998852 0122322 233333333333222 2222222221111 11122446778
Q ss_pred HHHHHHhcccHhHHHHHHHHHhH
Q 046547 283 VVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+...|...|++++|..+|++..+
T Consensus 258 la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 258 LGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH
Confidence 88999999999999999998764
No 74
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.19 E-value=2.3e-09 Score=83.08 Aligned_cols=150 Identities=9% Similarity=-0.024 Sum_probs=73.7
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
++++|...++++.+.. +.+...+..+...+...|++++|...+++..+.. +.+..++..+...+...|++++|.+.++
T Consensus 23 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 100 (186)
T 3as5_A 23 RYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKYDLAVPLLI 100 (186)
T ss_dssp CHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 3445555554443321 2233444444555555555555555555544432 1234444555555555555555555555
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+... ..+.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 101 ~~~~--~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 101 KVAE--ANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHh--cCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5543 122344445555555555555555555555555432 12334455555555555566666555555443
No 75
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.18 E-value=1.7e-09 Score=102.09 Aligned_cols=165 Identities=9% Similarity=-0.025 Sum_probs=111.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
..+|+.+-..|.+.|++++|.+.|++..+.. +-+..+|+.+-.+|.+.|++++|+..|++..+- -+-+...|..+-.
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 4567777777777777777777777766542 123566777777777777777777777776642 1224556777777
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChh
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWK 329 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 329 (343)
+|...|++++|.+.|++..+. .| +...|..+-..|...|++++|++.|++..+.. +-+...+..+...|...|+++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence 777777777777777777663 34 34567777777777777777777777776643 124666777777777777777
Q ss_pred HHHHHHHHHHhh
Q 046547 330 LATVVRQRFAEL 341 (343)
Q Consensus 330 ~a~~~~~~m~~~ 341 (343)
+|.+.+++..++
T Consensus 163 ~A~~~~~kal~l 174 (723)
T 4gyw_A 163 DYDERMKKLVSI 174 (723)
T ss_dssp THHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 76
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.17 E-value=6.5e-10 Score=94.77 Aligned_cols=230 Identities=10% Similarity=0.007 Sum_probs=170.4
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCcc-----HHHHHHHHHHHHhccCchhHHHHHHHHHHhc----CCcc-CHhhHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPV-----PQIRLLLSSAWLERRCQSQSVADILLEMKSI----GYHP-DCGTCNYLV 178 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll 178 (343)
.+...|++++|...|+++.+.. |+ ...+..+...+...+ ++++|.+.+++..+. +-.| ...++..+.
T Consensus 14 ~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLH-DYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 4557799999999999998764 33 245666666666665 699999998876532 2222 356788888
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCC-CCC----HhhHHHHHHHHhcCCC--------------------hhHHHHHHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAEC-VPD----LESYSIVIGAMSTARK--------------------TNDAVEMMKEMV 233 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~m~ 233 (343)
..+...|++++|...+++..+... .++ ..++..+...+...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 899999999999999988764211 112 3478888899999999 999999888765
Q ss_pred hc---CCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 234 LN---MGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERK----GCPI-GFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 234 ~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.- .+..| ...++..+...+...|++++|.+.+++..+. +..+ ...++..+...+...|++++|.+.+++..
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 11112 2456888888999999999999999987642 1111 12367788888999999999999999876
Q ss_pred HC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 305 ER----GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 305 ~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+. +-.+ ...++..+...|...|++++|.+.+++..++
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 292 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAI 292 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 43 1111 2567888899999999999999999987654
No 77
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.14 E-value=3.1e-09 Score=77.64 Aligned_cols=128 Identities=12% Similarity=-0.006 Sum_probs=58.9
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 289 (343)
..+...+...|++++|..+++++... .+.+...+..+...+...|++++|..+++++.+.+ +.+...+..+...+..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 33444444444444444444444431 11233344444444444455555555555444322 1123344444444555
Q ss_pred cccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+.
T Consensus 82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 555555555555544432 123444455555555555555555555555443
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.10 E-value=4.2e-08 Score=85.46 Aligned_cols=189 Identities=10% Similarity=-0.017 Sum_probs=87.6
Q ss_pred chhHHHHHHHHHHhc----CCc--c-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC--C--CHhhHHHHHHHHhcC
Q 046547 151 QSQSVADILLEMKSI----GYH--P-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV--P--DLESYSIVIGAMSTA 219 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~----g~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--~--~~~~~~~ll~~~~~~ 219 (343)
++++|...+++..+. +.. | ....+..+-..+...|++++|...+++....... + ...++..+...+...
T Consensus 108 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~ 187 (373)
T 1hz4_A 108 FLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLAR 187 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHc
Confidence 456666555554321 111 1 1233444555555666666666666655432111 1 123455555555666
Q ss_pred CChhHHHHHHHHHHhcCCCCCc-hhHHH-----HHHHHHHhCccHHHHHHHHHHHHHcCCCCc---hhhHHHHHHHHHhc
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPR-QGMVI-----KVAAALRANREMWKAVEMIEFLERKGCPIG---FQGYEVVVEGCLEC 290 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~-~~~~~-----~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~li~~~~~~ 290 (343)
|++++|...+++...- .-.++ ...+. ..+..+...|++++|...+++.......++ ...+..+...+...
T Consensus 188 g~~~~A~~~l~~a~~~-~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~ 266 (373)
T 1hz4_A 188 GDLDNARSQLNRLENL-LGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266 (373)
T ss_dssp TCHHHHHHHHHHHHHH-HTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHH-HhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHHHHc
Confidence 6666666666655431 11111 01111 122334556666666666655543221110 11234444555666
Q ss_pred ccHhHHHHHHHHHhHC----CCCCCH-HHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 291 REYILAGKTVMGMTER----GFIPYI-KVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~----g~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++..+
T Consensus 267 g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 267 GEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666666554332 211122 2444455555666666666666655443
No 79
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.08 E-value=5.4e-08 Score=78.51 Aligned_cols=195 Identities=8% Similarity=-0.098 Sum_probs=141.9
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYL 177 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~l 177 (343)
|...+...-. .+...|++++|+..|++..+..-.++...+..+-..+...+ ++++|.+.+++..+.. +.+...|..+
T Consensus 6 ~~~~~~~~g~-~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~-~~~~A~~~~~~al~~~-p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGN-DALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIK-KYKEAADYFDIAIKKN-YNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHH-HHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHTT-CSHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhh-cHHHHHHHHHHHHHhC-cchHHHHHHH
Confidence 4444544443 56677999999999999998764367767666666666665 7999999999998753 2356788889
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCCCH-------hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVPDL-------ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIK 247 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~-------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~ 247 (343)
...|...|++++|...|++..+... .+. .+|..+-..+...|++++|+..|++..+ ..|+ ...+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~ 158 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVP-GNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYS 158 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHH
Confidence 9999999999999999999987532 233 4578888889999999999999999984 3454 566777
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+-.+|...| ..+++++...+. .+...|.... ....+.+++|...+++..+..
T Consensus 159 l~~~~~~~~-----~~~~~~a~~~~~-~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 159 LGVLFYNNG-----ADVLRKATPLAS-SNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHH-----HHHHHHHGGGTT-TCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-----HHHHHHHHhccc-CCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 777775544 444555555432 2344444433 345677899999999988754
No 80
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.08 E-value=9.6e-09 Score=90.00 Aligned_cols=164 Identities=8% Similarity=-0.138 Sum_probs=98.5
Q ss_pred HHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCC-----chhHHHH
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMP-----RQGMVIK 247 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p-----~~~~~~~ 247 (343)
...+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|+..+++...-..-.+ ...+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455667777777777776543 1111 234566677777777777777777776553101111 1345666
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CC-CCCHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEFLERK----GCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTER----GF-IPYIKVRQK 317 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~-~p~~~~~~~ 317 (343)
+-..|...|++++|...+++..+. +-.+ ...++..+-..|...|++++|.+.+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 667777777777777777766532 1111 1125666666677777777777777776552 22 223556667
Q ss_pred HHHHHhccCChhHHHHHHHHHHhh
Q 046547 318 VVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 318 li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+...|.+.|++++|.+.+++..++
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~ 293 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAY 293 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHH
Confidence 777777777777777777766543
No 81
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=2.3e-08 Score=83.56 Aligned_cols=144 Identities=12% Similarity=0.074 Sum_probs=67.3
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC-ccCHhhHHHHHHHHHccCcHHHHHHHHHHh
Q 046547 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY-HPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 119 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
|+..|++..+.+ .++..++..+-.++...| ++++|++++.+....|. .-+...+..++..+.+.|+++.|.+.+++|
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g-~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILG-DLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC-CHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 445555544433 333333333333444433 45566666555544332 123444555555566666666666666665
Q ss_pred hhCCCCC-----CHhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 198 SSAECVP-----DLESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 198 ~~~~~~~-----~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
.+. .| +..+...+..+++. .++.++|..+|+++..+ .|+..+-..++.++.+.|++++|.+.++.+
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l 237 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELL 237 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 543 23 23333334433221 22555666666665432 233222233333555556666666665544
Q ss_pred H
Q 046547 269 E 269 (343)
Q Consensus 269 ~ 269 (343)
.
T Consensus 238 ~ 238 (310)
T 3mv2_B 238 L 238 (310)
T ss_dssp H
T ss_pred H
Confidence 3
No 82
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.07 E-value=6.8e-09 Score=87.48 Aligned_cols=133 Identities=10% Similarity=-0.058 Sum_probs=64.7
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHHHHHhcC-CChhHHHHHHHHHHhc---CCCCCc-
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSA----ECVP-DLESYSIVIGAMSTA-RKTNDAVEMMKEMVLN---MGLMPR- 241 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~---~~~~p~- 241 (343)
.+|+.+...|.+.|++++|...|++..+. |-.. -..+++.+...|... |++++|+..|++..+- .+-.+.
T Consensus 78 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~ 157 (292)
T 1qqe_A 78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS 157 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHH
Confidence 44555555555555555555555554331 1100 023455555555554 6666666666555431 000000
Q ss_pred hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch------hhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 242 QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF------QGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 242 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
..+++.+...+.+.|++++|...|++..+....... ..|..+...+...|++++|...|++..
T Consensus 158 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 226 (292)
T 1qqe_A 158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 234555555666666666666666665543211111 033444445555666666666666554
No 83
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.04 E-value=1.7e-08 Score=90.53 Aligned_cols=283 Identities=9% Similarity=-0.035 Sum_probs=159.3
Q ss_pred HHHHHhCccCcchHHHHHHHchhcCCCCChHH-HhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCC-
Q 046547 37 TVRAAVDAKDYQQIPELLGSFEEACQNPNPFS-FLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLH- 114 (343)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~- 114 (343)
+...+.+.|++++|.+.|++..+.|. |+... +-.++...|.....+++++.+.+.-.. +...+..+-. .+...+
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~-~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~--~~~A~~~Lg~-~~~~~~~ 84 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY-SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT--SPRAQARLGR-LLAAKPG 84 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC-CTGGGTCC------------------------------CHHHHHH-HHHTC--
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC-HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC--CHHHHHHHHH-HHHhCCC
Confidence 55666778999999999998887763 33332 233334455553334444443322221 3333333332 122333
Q ss_pred ----ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCc--hhHHHHHHHHHHhcC----------------------
Q 046547 115 ----PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQ--SQSVADILLEMKSIG---------------------- 166 (343)
Q Consensus 115 ----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~--~~~a~~~~~~m~~~g---------------------- 166 (343)
++++|...|++..+.|... .+..|-..|...++. ..++.+.+......|
T Consensus 85 ~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 85 ATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGH
T ss_pred CCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCH
Confidence 6788999999888766322 333333333332210 011222222222111
Q ss_pred ----------CccCHhhHHHHHHHHHccC---cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC----CChhHHHHHH
Q 046547 167 ----------YHPDCGTCNYLVSSLCAID---QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA----RKTNDAVEMM 229 (343)
Q Consensus 167 ----------~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~~ 229 (343)
...++..+..|-..|...| +.++|.+.|++..+.|. ++...+..+-..|... ++.++|+.+|
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~ 240 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQALL 240 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHHH
Confidence 1334446777777787888 88888888888888774 4455445566666544 6888888888
Q ss_pred HHHHhcCCCCCchhHHHHHHHH-H--HhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc-----cHhHHHHHHH
Q 046547 230 KEMVLNMGLMPRQGMVIKVAAA-L--RANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR-----EYILAGKTVM 301 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~ 301 (343)
+... . | +...+..|-.. + ...++.++|.+.|++..+.| +...+..|-..|. .| ++++|.++|+
T Consensus 241 ~~aa-~-g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~ 311 (452)
T 3e4b_A 241 EKIA-P-G---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE 311 (452)
T ss_dssp HHHG-G-G---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred HHHc-C-C---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence 8876 2 3 44455555555 3 45778899999998888776 4455666666665 45 8888999888
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHh
Q 046547 302 GMTERGFIPYIKVRQKVVEGLAG----VGEWKLATVVRQRFAE 340 (343)
Q Consensus 302 ~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~ 340 (343)
+.. .| +...+..|-..|.. ..+.++|.+.|++..+
T Consensus 312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~ 350 (452)
T 3e4b_A 312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAAR 350 (452)
T ss_dssp TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHT
T ss_pred HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHh
Confidence 877 43 55666667666666 3488889988887654
No 84
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.03 E-value=9.6e-08 Score=83.16 Aligned_cols=232 Identities=10% Similarity=-0.041 Sum_probs=160.3
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHH----HHHHHHHHHHhccCchhHHHHHHHHHHhc----CCcc-CHhhHHHHHH
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQ----IRLLLSSAWLERRCQSQSVADILLEMKSI----GYHP-DCGTCNYLVS 179 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~----~~~~li~~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~ 179 (343)
.+...|++++|...+++.....-..+.. .++.+-..+...| ++++|...+++.... |... ...++..+..
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKG-ELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 4446799999999999987654222222 3344444555554 799999998887642 2111 1233566777
Q ss_pred HHHccCcHHHHHHHHHHhhhC----CCC--C-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC-CCC--chhHHHHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSA----ECV--P-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG-LMP--RQGMVIKVA 249 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p--~~~~~~~li 249 (343)
.+...|++++|...+++.... +.. | ...++..+...+...|++++|...+++...... ..+ ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 888999999999999887642 222 2 245667788889999999999999998775211 111 235677888
Q ss_pred HHHHhCccHHHHHHHHHHHHHcCCCCch-hhHH-----HHHHHHHhcccHhHHHHHHHHHhHCCCCC---CHHHHHHHHH
Q 046547 250 AALRANREMWKAVEMIEFLERKGCPIGF-QGYE-----VVVEGCLECREYILAGKTVMGMTERGFIP---YIKVRQKVVE 320 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~-----~li~~~~~~g~~~~a~~~~~~m~~~g~~p---~~~~~~~li~ 320 (343)
..+...|++++|...+++.....-.++. ..+. .....+...|++++|...+.+.......+ ....+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 8899999999999999988753211111 1121 23344779999999999999887543221 1335677888
Q ss_pred HHhccCChhHHHHHHHHHHhh
Q 046547 321 GLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 321 ~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.+...|++++|...+++..+.
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~ 282 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNEN 282 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999887543
No 85
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.01 E-value=2.2e-08 Score=72.95 Aligned_cols=128 Identities=11% Similarity=-0.003 Sum_probs=71.8
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 253 (343)
|..+...+...|++++|.++|+++.+.+ +.+..++..+...+...|++++|..+++++... .+.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHHH
Confidence 4445555555666666666666655432 123445555555566666666666666665532 2234445555666666
Q ss_pred hCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 254 ANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
..|++++|.+.++++.+.. +.+..++..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 6666666666666655532 12344555566666666666666666666554
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=98.98 E-value=3e-08 Score=93.62 Aligned_cols=147 Identities=9% Similarity=-0.011 Sum_probs=68.9
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
++++|.+.|++..+.. +-+..+|+.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|++.|+
T Consensus 24 ~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l~~~g~~~~A~~~~~ 101 (723)
T 4gyw_A 24 NIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQDVQGALQCYT 101 (723)
T ss_dssp CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3444554444444321 1123444444455555555555555555544432 1123445555555555555555555555
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
+..+- -+-+...|+.+-.+|...|++++|.+.|++..+. .|+ ...|..+...|...|++++|.+.+++.
T Consensus 102 kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l--~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 102 RAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKL--KPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred HHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 54431 1123344555555555555555555555555442 232 334445555555555555555555443
No 87
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.97 E-value=1.2e-07 Score=78.32 Aligned_cols=60 Identities=10% Similarity=-0.016 Sum_probs=35.4
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCCC-C-CHHHHHHHHHHHhcc----------CChhHHHHHHHHHHhh
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGFI-P-YIKVRQKVVEGLAGV----------GEWKLATVVRQRFAEL 341 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 341 (343)
.+...|.+.|++++|...|+++.+..-. | ....+..+..+|... |++++|...|+++.+.
T Consensus 153 ~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 153 EAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 3445566677777777777776654211 1 234555566666654 6667777777766654
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.92 E-value=2e-08 Score=84.55 Aligned_cols=204 Identities=11% Similarity=0.046 Sum_probs=146.3
Q ss_pred HHHHHHHHHHhcCCCccHHHHHHHHHHHHhc--cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHH
Q 046547 118 LALAILQRTLRSGCVPVPQIRLLLSSAWLER--RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195 (343)
Q Consensus 118 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 195 (343)
+|.+++.+..+. .+++...| .+ ... .+++++|...+++. ...|...|++++|...|+
T Consensus 3 ~a~~~~~~a~k~-~~~~~~~~-~~----~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~ 61 (292)
T 1qqe_A 3 DPVELLKRAEKK-GVPSSGFM-KL----FSGSDSYKFEEAADLCVQA---------------ATIYRLRKELNLAGDSFL 61 (292)
T ss_dssp CHHHHHHHHHHH-SSCCCTHH-HH----HSCCSHHHHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHH
T ss_pred cHHHHHHHHHHH-hCcCCCcc-hh----cCCCCCccHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHH
Confidence 466777776654 23322222 22 222 22478888888776 345778899999999998
Q ss_pred HhhhC----CCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCC-chhHHHHHHHHHHhC-ccHHHHHHHH
Q 046547 196 GMSSA----ECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMP-RQGMVIKVAAALRAN-REMWKAVEMI 265 (343)
Q Consensus 196 ~m~~~----~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~-~~~~~a~~~~ 265 (343)
+.... |-.++ ..+|+.+..+|...|++++|+..+++...- .|-.+ -..+++.+-..|... |++++|...|
T Consensus 62 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~ 141 (292)
T 1qqe_A 62 KAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCY 141 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHH
Confidence 77543 32222 568999999999999999999999987641 12111 145788899999996 9999999999
Q ss_pred HHHHHc----CCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH------HHHHHHHHHHhccCChhHHHHH
Q 046547 266 EFLERK----GCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI------KVRQKVVEGLAGVGEWKLATVV 334 (343)
Q Consensus 266 ~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~------~~~~~li~~~~~~g~~~~a~~~ 334 (343)
++..+. +-.+. ..++..+...|.+.|++++|...|++..+....... ..|..+..++...|++++|...
T Consensus 142 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 221 (292)
T 1qqe_A 142 ELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAART 221 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 988753 11111 346788889999999999999999998876432221 2567788889999999999999
Q ss_pred HHHHHhhc
Q 046547 335 RQRFAELK 342 (343)
Q Consensus 335 ~~~m~~~~ 342 (343)
|++..++.
T Consensus 222 ~~~al~l~ 229 (292)
T 1qqe_A 222 LQEGQSED 229 (292)
T ss_dssp HHGGGCC-
T ss_pred HHHHHhhC
Confidence 99877654
No 89
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.90 E-value=7.4e-07 Score=74.88 Aligned_cols=212 Identities=10% Similarity=-0.057 Sum_probs=142.6
Q ss_pred HHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh---hHHHHHHHHHccCcHHHHHHHHHH
Q 046547 120 LAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG---TCNYLVSSLCAIDQLVEAAKVLKG 196 (343)
Q Consensus 120 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~ 196 (343)
...+.+.......|+..+...+...+ +-.++. ++. .....+.. .+...+..+...|++++|.+++++
T Consensus 31 ~~~~s~~e~g~~~~~~~~l~~i~~~l---~~~~~~---~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~ 100 (293)
T 3u3w_A 31 QSEVSRIESGAVYPSMDILQGIAAKL---QIPIIH---FYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWN 100 (293)
T ss_dssp HHHHHHHHTTSCCCCHHHHHHHHHHH---TCCTHH---HHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHh---CcCHHH---HhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 34455555444567777766665543 112221 221 11122222 233346778889999999999999
Q ss_pred hhhCC-CCCCH----hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 197 MSSAE-CVPDL----ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 197 m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
..+.. ..|+. ..|..+...+...|++++|+..+++......-.++ ..+++.+...|...|++++|...+++
T Consensus 101 ~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~ 180 (293)
T 3u3w_A 101 ELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQ 180 (293)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 87643 23332 23445677777888999999999998862111223 23688999999999999999999998
Q ss_pred HHH----c-CCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHhccCC-hhHHHHHH
Q 046547 268 LER----K-GCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER----GFIPY-IKVRQKVVEGLAGVGE-WKLATVVR 335 (343)
Q Consensus 268 m~~----~-g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~-~~~a~~~~ 335 (343)
..+ . +..+. ..+|..+...|.+.|++++|.+.+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.+
T Consensus 181 al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~ 260 (293)
T 3u3w_A 181 ILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAY 260 (293)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHH
Confidence 874 1 22222 236778888899999999999999887643 32232 6788889999999995 69999999
Q ss_pred HHHHhh
Q 046547 336 QRFAEL 341 (343)
Q Consensus 336 ~~m~~~ 341 (343)
++..++
T Consensus 261 ~~Al~i 266 (293)
T 3u3w_A 261 KKASFF 266 (293)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 887654
No 90
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.89 E-value=2.6e-07 Score=74.44 Aligned_cols=177 Identities=12% Similarity=-0.044 Sum_probs=100.0
Q ss_pred HHHHhccCchhHHHHHHHHHHhcCCc-c-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH----hhHHHHHHHH
Q 046547 143 SAWLERRCQSQSVADILLEMKSIGYH-P-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL----ESYSIVIGAM 216 (343)
Q Consensus 143 ~~~~~~~~~~~~a~~~~~~m~~~g~~-~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~ 216 (343)
..+...+ ++++|...|+++.+.... | ....+..+..+|.+.|++++|...|++..+.. |+. ..+-.+..++
T Consensus 12 ~~~~~~g-~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~--P~~~~~~~a~~~~g~~~ 88 (225)
T 2yhc_A 12 QQKLQDG-NWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN--PTHPNIDYVMYMRGLTN 88 (225)
T ss_dssp HHHHHHT-CHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHH
T ss_pred HHHHHcC-CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCCcHHHHHHHHHHHH
Confidence 3445554 577888888877664211 1 12456666777777888888888887776643 222 1233333333
Q ss_pred hc------------------CCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 217 ST------------------ARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 217 ~~------------------~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
.. .|+.++|+..|+++.+ ..+-+...+.+..... .+...+. .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~--~~P~~~~a~~a~~~l~----------~~~~~~~--------~ 148 (225)
T 2yhc_A 89 MALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVR--GYPNSQYTTDATKRLV----------FLKDRLA--------K 148 (225)
T ss_dssp HHHHC--------------CCHHHHHHHHHHHHHHT--TCTTCTTHHHHHHHHH----------HHHHHHH--------H
T ss_pred HhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHH--HCcCChhHHHHHHHHH----------HHHHHHH--------H
Confidence 32 3455666666666553 2222222222111100 0000000 0
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHCCCC-C-CHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTERGFI-P-YIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
..-.+...|.+.|++++|...|+++.+..-. | ....+..+..+|.+.|++++|.+.++.+....
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 1123455678889999999999988775311 1 13567788889999999999999988876543
No 91
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.89 E-value=2.7e-07 Score=80.63 Aligned_cols=226 Identities=6% Similarity=-0.094 Sum_probs=156.1
Q ss_pred hhcccchHHHHHHHHhcCCCCCCCC----hhhHHHHHHHHhhcCCChHHHHHHHHHHHhc----C-CCc-cHHHHHHHHH
Q 046547 74 PQNHRIKVIDEMLESFIPLRPRSRP----KIAYDYLLSYTLQSLHPLPLALAILQRTLRS----G-CVP-VPQIRLLLSS 143 (343)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~p~----~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~----~-~~p-~~~~~~~li~ 143 (343)
...|+...+.+.++....+.+..++ ..++..+- .++...|+++.|...+++..+. + ..+ ...+++.+-.
T Consensus 112 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg-~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 112 FDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVA-EAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHH-HHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHH-HHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 4566666666666665544332233 23454444 3677889999999999987642 1 111 2344555655
Q ss_pred HHHhccCchhHHHHHHHHHHhc----CCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhh-----CCCCCCHhhHHHHH
Q 046547 144 AWLERRCQSQSVADILLEMKSI----GYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSS-----AECVPDLESYSIVI 213 (343)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~~~~~~~~~ll 213 (343)
.+...+ ++++|.+.+++..+. +-.+ ...+++.+-..|...|++++|...|++..+ .. +....++..+.
T Consensus 191 ~y~~~~-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la 268 (378)
T 3q15_A 191 NYDDFK-HYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLFGLS 268 (378)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHH
T ss_pred HHHHhC-CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHHHHH
Confidence 666654 799999998887643 2111 245788888999999999999999998876 33 23367888899
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCC---CCCchhHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCCCCc-hhhHHHHHHH
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMG---LMPRQGMVIKVAAALRANRE---MWKAVEMIEFLERKGCPIG-FQGYEVVVEG 286 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~---~~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~ 286 (343)
..+.+.|++++|...+++...-.. -+.....+..+-..+...++ +.+|...++. .+..|+ ...+..+...
T Consensus 269 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 269 WTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHH
Confidence 999999999999999999885322 22223445666666667777 7777777765 333333 3356678888
Q ss_pred HHhcccHhHHHHHHHHHhH
Q 046547 287 CLECREYILAGKTVMGMTE 305 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~ 305 (343)
|...|++++|.+.|++..+
T Consensus 346 y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999998754
No 92
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=98.86 E-value=3.2e-07 Score=76.68 Aligned_cols=181 Identities=9% Similarity=-0.020 Sum_probs=134.2
Q ss_pred HHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCC-CCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC-VPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 155 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
+...|++....+ .++..++..+..++...|++++|++++.+-...|. .-+...+..++..+.+.|+.+.|.+.++.|.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 677888877665 45556666788889999999999999998866653 2356778889999999999999999999997
Q ss_pred hcCCCCC-----chhHHHHHHHHHH--hCc--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 234 LNMGLMP-----RQGMVIKVAAALR--ANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 234 ~~~~~~p-----~~~~~~~li~~~~--~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
+. .| +..+...|..+++ ..| +..+|..+|+++.+. .|+..+-..++.++.+.|++++|.+.++.+.
T Consensus 164 ~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 NA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 53 56 3566677776633 333 899999999998764 3553344455558999999999999998765
Q ss_pred HC-----C----CCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 305 ER-----G----FIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 305 ~~-----g----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
+. . -+-|..+...+|......|+ +|.++++++.+..|
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P 284 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDH 284 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTC
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCC
Confidence 43 1 13367777566655555676 88899999887653
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=98.84 E-value=4.3e-07 Score=74.87 Aligned_cols=171 Identities=8% Similarity=-0.031 Sum_probs=90.8
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC-c-cCHhhHHHHHHHHHc
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPV----PQIRLLLSSAWLERRCQSQSVADILLEMKSIGY-H-PDCGTCNYLVSSLCA 183 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~-~-~~~~~~~~ll~~~~~ 183 (343)
+...|++++|...|+++.+.. |+ ...+..+-..+...+ ++++|...|+...+... . .....+..+..++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~ 101 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNK-EYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYK 101 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHH
Confidence 445577777777777777643 33 334444444555554 57777777777766421 1 113345555566666
Q ss_pred --------cCcHHHHHHHHHHhhhCCCCCCH-hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 184 --------IDQLVEAAKVLKGMSSAECVPDL-ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 184 --------~~~~~~a~~~~~~m~~~~~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
.|++++|...|++..+.. |+. .....+ ..+...... -...+..+...|.+
T Consensus 102 ~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~--------------~~~~~~~~~-----~~~~~~~la~~~~~ 160 (261)
T 3qky_A 102 LSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDAT--------------QKIRELRAK-----LARKQYEAARLYER 160 (261)
T ss_dssp HCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHH--------------HHHHHHHHH-----HHHHHHHHHHHHHH
T ss_pred hcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHH--------------HHHHHHHHH-----HHHHHHHHHHHHHH
Confidence 777777777777766542 322 111111 001111100 00112444556666
Q ss_pred CccHHHHHHHHHHHHHcCCCCc----hhhHHHHHHHHHhc----------ccHhHHHHHHHHHhHC
Q 046547 255 NREMWKAVEMIEFLERKGCPIG----FQGYEVVVEGCLEC----------REYILAGKTVMGMTER 306 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~~p~----~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~ 306 (343)
.|++++|...|+...+.. |+ ...+..+..+|... |++++|...|+++.+.
T Consensus 161 ~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 161 RELYEAAAVTYEAVFDAY--PDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 667777777666666532 22 23444455555544 6667777777766654
No 94
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=1.3e-06 Score=73.29 Aligned_cols=169 Identities=10% Similarity=-0.076 Sum_probs=106.9
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC-----HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC--CCCc--h
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD-----LESYSIVIGAMSTARKTNDAVEMMKEMVLNMG--LMPR--Q 242 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--~~p~--~ 242 (343)
..+...+..+...|++++|.+.+.+..+.....+ ...+..+...+...|++++|+..+++...... ..+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444556677778888888888877665432211 12233455566777788888888877763111 1111 3
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHH---c-CCCC--chhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCC-C
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLER---K-GCPI--GFQGYEVVVEGCLECREYILAGKTVMGMTER----GFIP-Y 311 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~---~-g~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~ 311 (343)
.+|+.+-..|...|++++|...+++..+ . +-.+ ...+|..+...|...|++++|...+++..+. +..+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 4677777888888888888888887662 1 1111 1146677777788888888888888776543 1111 1
Q ss_pred HHHHHHHHHHHhccCChhHH-HHHHHHHHh
Q 046547 312 IKVRQKVVEGLAGVGEWKLA-TVVRQRFAE 340 (343)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~a-~~~~~~m~~ 340 (343)
..+|..+...|.+.|++++| ...+++..+
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56677778888888888888 666666543
No 95
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.83 E-value=1.5e-06 Score=77.78 Aligned_cols=16 Identities=13% Similarity=0.019 Sum_probs=10.4
Q ss_pred CcchHHHHHHHchhcC
Q 046547 46 DYQQIPELLGSFEEAC 61 (343)
Q Consensus 46 ~~~~a~~~~~~m~~~~ 61 (343)
++++|.+.|++..+.|
T Consensus 89 ~~~~A~~~~~~Aa~~g 104 (452)
T 3e4b_A 89 EHHEAESLLKKAFANG 104 (452)
T ss_dssp HHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHCC
Confidence 5567777777666554
No 96
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.82 E-value=9.5e-07 Score=70.48 Aligned_cols=177 Identities=10% Similarity=0.003 Sum_probs=110.6
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC----cHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID----QLVEAAK 192 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~----~~~~a~~ 192 (343)
.+|++.|++..+.| +...+..+-..|... +++++|.++|++..+.| ++..+..|-..|.. + ++++|.+
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~-~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSS-GDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHH-TCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35667777776654 444555554455454 46777888777777655 44556666666666 5 7777887
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhc----CCChhHHHHHHHHHHhcCCCC-CchhHHHHHHHHHHh----CccHHHHHH
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMST----ARKTNDAVEMMKEMVLNMGLM-PRQGMVIKVAAALRA----NREMWKAVE 263 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~~-p~~~~~~~li~~~~~----~~~~~~a~~ 263 (343)
.|++..+.| +...+..|-..|.. .+++++|+.+|++..+. +.. .+...+..|-..|.. .++.++|..
T Consensus 75 ~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~ 150 (212)
T 3rjv_A 75 LAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150 (212)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHH
Confidence 777776654 45556666666665 67777777777777642 321 125566666667766 667777777
Q ss_pred HHHHHHHcCCCCchhhHHHHHHHHHhc-c-----cHhHHHHHHHHHhHCC
Q 046547 264 MIEFLERKGCPIGFQGYEVVVEGCLEC-R-----EYILAGKTVMGMTERG 307 (343)
Q Consensus 264 ~~~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~g 307 (343)
.|++..+.+ .+...+..|-..|... | +.++|..+|++..+.|
T Consensus 151 ~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 151 YFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777776651 2333455555555432 2 6777777777766665
No 97
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.80 E-value=2.5e-07 Score=73.65 Aligned_cols=165 Identities=11% Similarity=-0.004 Sum_probs=110.4
Q ss_pred HHHhccCchhHHHHHHHHHHhcCCcc-CHhhHHH----------------HHHHHHccCcHHHHHHHHHHhhhCCCCCCH
Q 046547 144 AWLERRCQSQSVADILLEMKSIGYHP-DCGTCNY----------------LVSSLCAIDQLVEAAKVLKGMSSAECVPDL 206 (343)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~~-~~~~~~~----------------ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 206 (343)
.+...| ++++|...|++..+. .| +...|.. +...|.+.|++++|...|++..+.. +-+.
T Consensus 13 ~~~~~g-~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~ 88 (208)
T 3urz_A 13 AAIEAG-QNGQAVSYFRQTIAL--NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKA-PNNV 88 (208)
T ss_dssp HHHHTT-CHHHHHHHHHHHHHH--CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCH
T ss_pred HHHHCC-CHHHHHHHHHHHHHh--CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCH
Confidence 445554 699999999998875 34 3455666 7788888899999999998887754 2356
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc--HHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE--MWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
..+..+...+...|++++|+..|++..+. -+-+..++..+-.+|...|+ .+.+...++.... ..|....+...-
T Consensus 89 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~~~~g 164 (208)
T 3urz_A 89 DCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYARYRDG 164 (208)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHHHHHH
Confidence 77888888888999999999999988852 23356677777777765543 3444555554432 222222333334
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHH
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPYIKVRQKV 318 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~l 318 (343)
.++...|++++|...|++..+. .|+......+
T Consensus 165 ~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l 196 (208)
T 3urz_A 165 LSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL 196 (208)
T ss_dssp HHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence 4566688889999999888754 5765544433
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.4e-06 Score=68.15 Aligned_cols=175 Identities=10% Similarity=-0.017 Sum_probs=112.8
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC----ChhHHHHHH
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR----KTNDAVEMM 229 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~~ 229 (343)
+|.+.|++..+.| ++..+..+-..|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.++|
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~ 76 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA 76 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence 4666777776654 55666667777777777778877777777664 44555666666666 5 777777777
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHh----CccHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHh----cccHhHHHHHH
Q 046547 230 KEMVLNMGLMPRQGMVIKVAAALRA----NREMWKAVEMIEFLERKGCP-IGFQGYEVVVEGCLE----CREYILAGKTV 300 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~----~g~~~~a~~~~ 300 (343)
+...+. | +...+..|-..|.. .+++++|.+.|++..+.|.. .+...+..|-..|.. .+++++|..+|
T Consensus 77 ~~A~~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 77 EKAVEA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 777652 3 44556666666665 66777787777777765431 014556666666666 66777777777
Q ss_pred HHHhHCCCCCCHHHHHHHHHHHhcc-C-----ChhHHHHHHHHHHhh
Q 046547 301 MGMTERGFIPYIKVRQKVVEGLAGV-G-----EWKLATVVRQRFAEL 341 (343)
Q Consensus 301 ~~m~~~g~~p~~~~~~~li~~~~~~-g-----~~~~a~~~~~~m~~~ 341 (343)
++..+.+ .+...+..|-..|... | +.++|.+.|++..+.
T Consensus 153 ~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~ 197 (212)
T 3rjv_A 153 KGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLE 197 (212)
T ss_dssp HHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHH
T ss_pred HHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHc
Confidence 7776652 2333455555555543 2 777777777766543
No 99
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.78 E-value=2.3e-07 Score=85.67 Aligned_cols=153 Identities=9% Similarity=-0.038 Sum_probs=113.0
Q ss_pred CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
+++++|.+.+++..+.. +.+...+..+...+...|++++|.+.|++..+.. +.+..++..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36788999998887642 3346788888899999999999999999988754 235778888999999999999999999
Q ss_pred HHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc---ccHhHHHHHHHHHhHC
Q 046547 230 KEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC---REYILAGKTVMGMTER 306 (343)
Q Consensus 230 ~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~ 306 (343)
++..+. -+.+...+..+..+|.+.|++++|.+.+++..+.. +.+...+..+...+... |++++|.+.+++..+.
T Consensus 81 ~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 81 QQASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 998863 23456788999999999999999999999988753 22456788888889999 9999999999998876
Q ss_pred C
Q 046547 307 G 307 (343)
Q Consensus 307 g 307 (343)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 5
No 100
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.75 E-value=5.1e-07 Score=76.52 Aligned_cols=184 Identities=12% Similarity=0.011 Sum_probs=113.8
Q ss_pred HHHhccCchhHHHHHHHHHHhc----CCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhC----CCCC-CHhhHHHHH
Q 046547 144 AWLERRCQSQSVADILLEMKSI----GYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSA----ECVP-DLESYSIVI 213 (343)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~----g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll 213 (343)
.|... +++++|...+.+..+. |-.+ -..+|+.+...|.+.|++++|...|++..+. |-.. -..+++.+-
T Consensus 45 ~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg 123 (307)
T 2ifu_A 45 AFKNA-KQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAG 123 (307)
T ss_dssp HHHHT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 33344 3577777777766432 1111 1346777777888888888888888765432 2111 135677777
Q ss_pred HHHhcCCChhHHHHHHHHHHhc---CCCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCCch-hhHHHHH
Q 046547 214 GAMSTARKTNDAVEMMKEMVLN---MGLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERK----GCPIGF-QGYEVVV 284 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~li 284 (343)
..|.. |++++|+..|++...- .+-.+ ...+++.+...|.+.|++++|...|++..+. +..+.. ..+..+.
T Consensus 124 ~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g 202 (307)
T 2ifu_A 124 KLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQV 202 (307)
T ss_dssp HHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHH
Confidence 77877 8888888888876631 11111 1356777888888888888888888877652 211111 2455556
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCC------HHHHHHHHHHHhccCChhHHHH
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPY------IKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~------~~~~~~li~~~~~~g~~~~a~~ 333 (343)
..+...|++++|...|++.. . .|+ ......++.++ ..|+.+.+.+
T Consensus 203 ~~~~~~g~~~~A~~~~~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 203 LVQLHRADYVAAQKCVRESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHHTTCHHHHHHHHHHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 66777788888888888877 3 231 22344555555 5666665555
No 101
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.71 E-value=5e-07 Score=76.57 Aligned_cols=200 Identities=9% Similarity=-0.013 Sum_probs=143.4
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
.|++++|.+++++..+..- .. +...++++++|...|... ...|...|++++|..
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~ 57 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD 57 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence 4678888888888765321 11 112134677777777664 456778899999999
Q ss_pred HHHHhhhC----CCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCC-chhHHHHHHHHHHhCccHHHHHH
Q 046547 193 VLKGMSSA----ECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMP-RQGMVIKVAAALRANREMWKAVE 263 (343)
Q Consensus 193 ~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~~~~a~~ 263 (343)
.|.+..+. |-.+ -..+|+.+...|...|++++|+..|++...- .|-.+ -..+++.+-..|.. |++++|..
T Consensus 58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~ 136 (307)
T 2ifu_A 58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH 136 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence 98877542 2111 1457888999999999999999999986631 12211 24577888888888 99999999
Q ss_pred HHHHHHHc----CCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCCC-HHHHHHHHHHHhccCChhHHHH
Q 046547 264 MIEFLERK----GCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTER----GFIPY-IKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 264 ~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~a~~ 333 (343)
.|++..+. |-.+ ...++..+-..|.+.|++++|+..|++..+. +..+. ...+..+...+...|++++|..
T Consensus 137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~ 216 (307)
T 2ifu_A 137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK 216 (307)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 99987652 1111 1357788888999999999999999998753 22222 2366677778888899999999
Q ss_pred HHHHHH
Q 046547 334 VRQRFA 339 (343)
Q Consensus 334 ~~~~m~ 339 (343)
.|++..
T Consensus 217 ~~~~al 222 (307)
T 2ifu_A 217 CVRESY 222 (307)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999876
No 102
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.70 E-value=1.4e-05 Score=67.18 Aligned_cols=226 Identities=8% Similarity=-0.045 Sum_probs=159.2
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhcc-CchhHHHHHHHHHHhcCCccCHhhHHHHHHHH----Hc
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGTCNYLVSSL----CA 183 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~----~~ 183 (343)
..+....++|++.++++... .|+..| |+.--..+...+ ..++++++.++.+..... -+..+|+.--..+ ..
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP-k~y~aW~~R~~iL~~~~~~ 119 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE-KNYQIWNYRQLIIGQIMEL 119 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT-TCCHHHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc-ccHHHHHHHHHHHHHHHHh
Confidence 33434456899999999884 476655 444433433333 378999999999987532 2334454333333 33
Q ss_pred c---CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChh--HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc-
Q 046547 184 I---DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN--DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE- 257 (343)
Q Consensus 184 ~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~- 257 (343)
. +++++++++++++.+.. +-+-.+|+----.+...|.++ ++++.++.+.+. -+-|...|+---..+.+.+.
T Consensus 120 l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~--d~~N~sAW~~R~~ll~~l~~~ 196 (306)
T 3dra_A 120 NNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT--DLKNNSAWSHRFFLLFSKKHL 196 (306)
T ss_dssp TTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHSSGGG
T ss_pred ccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcccc
Confidence 4 78999999999998754 336667776666777778888 999999999963 33466677766666667676
Q ss_pred -----HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH-HHHHHHHHhHCC--CCCCHHHHHHHHHHHhccCChh
Q 046547 258 -----MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL-AGKTVMGMTERG--FIPYIKVRQKVVEGLAGVGEWK 329 (343)
Q Consensus 258 -----~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~ 329 (343)
++++++.++.+..... -|...|+-+-..+.+.|+..+ +..+..++.+.+ -..+...+..+...|.+.|+.+
T Consensus 197 ~~~~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~ 275 (306)
T 3dra_A 197 ATDNTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYN 275 (306)
T ss_dssp CCHHHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHH
T ss_pred chhhhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHH
Confidence 8999999999887543 266678777777777777444 556776665543 1346788899999999999999
Q ss_pred HHHHHHHHHHh-hc
Q 046547 330 LATVVRQRFAE-LK 342 (343)
Q Consensus 330 ~a~~~~~~m~~-~~ 342 (343)
+|.++++.+.+ ++
T Consensus 276 ~A~~~~~~l~~~~D 289 (306)
T 3dra_A 276 ESRTVYDLLKSKYN 289 (306)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHhccC
Confidence 99999999885 54
No 103
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.70 E-value=2.5e-06 Score=68.67 Aligned_cols=174 Identities=11% Similarity=-0.031 Sum_probs=111.5
Q ss_pred hhcCCChHHHHHHHHHHHhcCCC-cc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCH--hhHHHHHHHHHc--
Q 046547 110 LQSLHPLPLALAILQRTLRSGCV-PV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDC--GTCNYLVSSLCA-- 183 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~--~~~~~ll~~~~~-- 183 (343)
+...|++++|...|+++.+.... |. ...+..+..++.+.+ ++++|...|++..+....... ..+..+..++..
T Consensus 14 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~-~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~ 92 (225)
T 2yhc_A 14 KLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNA-DLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALD 92 (225)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhh
Confidence 45669999999999999875421 11 245556666777765 699999999999875322111 134444444443
Q ss_pred ----------------cCcHHHHHHHHHHhhhCCCCCCHh-hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHH
Q 046547 184 ----------------IDQLVEAAKVLKGMSSAECVPDLE-SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVI 246 (343)
Q Consensus 184 ----------------~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~ 246 (343)
.|++++|...|+++.+.. |+.. .+.+... ...+...+. ...-
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~----------l~~~~~~~~---------~~~~ 151 (225)
T 2yhc_A 93 DSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKR----------LVFLKDRLA---------KYEY 151 (225)
T ss_dssp C--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHH----------HHHHHHHHH---------HHHH
T ss_pred hhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHH----------HHHHHHHHH---------HHHH
Confidence 578999999999998753 4432 2221111 111111111 1123
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGF----QGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
.+...|.+.|++++|...|+.+.+. .|+. ..+..+..+|.+.|+.++|.+.++.+...+
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 4556677888888888888888764 2332 356677778888888888888888877654
No 104
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.68 E-value=1.9e-06 Score=68.36 Aligned_cols=122 Identities=14% Similarity=0.113 Sum_probs=85.3
Q ss_pred HHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC
Q 046547 141 LSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR 220 (343)
Q Consensus 141 li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 220 (343)
+-..+...+ ++++|.+.|++. +.|+...+..+...|...|++++|.+.|++..+.. +.+...+..+..++...|
T Consensus 12 ~g~~~~~~~-~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~ 85 (213)
T 1hh8_A 12 EGVLAADKK-DWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE 85 (213)
T ss_dssp HHHHHHHTT-CHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhC-CHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence 333444544 577888777665 35567777777788888888888888888776643 235667777777888888
Q ss_pred ChhHHHHHHHHHHhcCCCCCc----------------hhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPR----------------QGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
++++|+..|+...+. .+.+ ...+..+..++.+.|++++|...|+...+
T Consensus 86 ~~~~A~~~~~~al~~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 86 KYDLAIKDLKEALIQ--LRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp CHHHHHHHHHHHHHT--TTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHh--CCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 888888888877752 1222 25677777777788888888888887776
No 105
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.68 E-value=2.8e-07 Score=71.20 Aligned_cols=160 Identities=11% Similarity=0.006 Sum_probs=92.7
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH-H
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA-L 252 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~ 252 (343)
+......+...|++++|...|++..+.. +-+...+..+...+...|++++|+..++..... .|+...+..+... +
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~ 84 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLEL 84 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHH
Confidence 3344455666777777777777665432 123555666666777777777777777766532 2233222221111 1
Q ss_pred HhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCChhH
Q 046547 253 RANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~ 330 (343)
...++...|...+++..+. .| +...+..+-..+...|++++|...|+++.+..-.+ +...+..+...+...|+.++
T Consensus 85 ~~~~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 162 (176)
T 2r5s_A 85 HQQAAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNA 162 (176)
T ss_dssp HHHHTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCH
T ss_pred HhhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCc
Confidence 1112222356666666553 34 34566666777777777777777777776654222 24566677777777777777
Q ss_pred HHHHHHHHH
Q 046547 331 ATVVRQRFA 339 (343)
Q Consensus 331 a~~~~~~m~ 339 (343)
|...|++..
T Consensus 163 A~~~y~~al 171 (176)
T 2r5s_A 163 IASKYRRQL 171 (176)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 106
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.67 E-value=8.8e-07 Score=70.37 Aligned_cols=127 Identities=6% Similarity=-0.132 Sum_probs=89.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
.+..+...+...|++++|...|++.. .|+..++..+...+...|++++|+..|++.... .+.+...|..+..++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINR--DKHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CccchHHHHHHHHHH
Confidence 34455667777888888888887663 467778888888888888888888888887752 234566777888888
Q ss_pred HhCccHHHHHHHHHHHHHcCCC--------------C-chhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 253 RANREMWKAVEMIEFLERKGCP--------------I-GFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~--------------p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
...|++++|.+.|+...+..-. | ....+..+...|.+.|++++|.+.|++..+
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 8888888888888887764211 1 114555666667777777777777776654
No 107
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.65 E-value=8.8e-07 Score=74.27 Aligned_cols=166 Identities=11% Similarity=-0.007 Sum_probs=106.6
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
.+...+..+-..+...|++++|...|++..+.. +-+...+..+...+...|++++|...++..... .|+.......
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 344555566666777788888888887776643 224566777777777788888888877776542 3443322222
Q ss_pred -HHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC-CCHHHHHHHHHHHhccC
Q 046547 249 -AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI-PYIKVRQKVVEGLAGVG 326 (343)
Q Consensus 249 -i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 326 (343)
...+...++.+.|...+++..+.. +.+...+..+-..|...|++++|...|.++....-. .+...+..+...|...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 222455566666777777766632 224556667777777888888888888777765421 12556777777788888
Q ss_pred ChhHHHHHHHHHH
Q 046547 327 EWKLATVVRQRFA 339 (343)
Q Consensus 327 ~~~~a~~~~~~m~ 339 (343)
+.++|...+++-.
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 8888777776543
No 108
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.64 E-value=2.5e-07 Score=87.24 Aligned_cols=126 Identities=9% Similarity=-0.069 Sum_probs=54.0
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
.+..+...+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|+..|++..+. -+-+...|..+-.++
T Consensus 435 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~ 511 (681)
T 2pzi_A 435 LPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLTGDYDSATKHFTEVLDT--FPGELAPKLALAATA 511 (681)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHH
Confidence 34444444444444444444444444321 112334444444444444444444444444421 111233344444444
Q ss_pred HhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 253 RANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
.+.|++++ .+.|++..+.. | +...|..+-..|.+.|++++|.+.|++..
T Consensus 512 ~~~g~~~~-~~~~~~al~~~--P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 561 (681)
T 2pzi_A 512 ELAGNTDE-HKFYQTVWSTN--DGVISAAFGLARARSAEGDRVGAVRTLDEVP 561 (681)
T ss_dssp HHHTCCCT-TCHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHcCChHH-HHHHHHHHHhC--CchHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 44444444 44444444321 2 22334444444444444444444444443
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.64 E-value=3.2e-06 Score=67.16 Aligned_cols=163 Identities=8% Similarity=-0.061 Sum_probs=107.9
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccHH-HHHH----------------HHHHHHhccCchhHHHHHHHHHHhcCCccCHh
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVPQ-IRLL----------------LSSAWLERRCQSQSVADILLEMKSIGYHPDCG 172 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~----------------li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~ 172 (343)
+...|++++|+..|++..+.. |+.. .|.. +-..+... +++++|...|++..+.. +-+..
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~-p~~~~ 89 (208)
T 3urz_A 14 AIEAGQNGQAVSYFRQTIALN--IDRTEMYYWTNVDKNSEISSKLATELALAYKKN-RNYDKAYLFYKELLQKA-PNNVD 89 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CCChHHHHHhhhcchhhhhHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHC-CCCHH
Confidence 446689999999999988743 6543 3433 44455555 46899999998887753 33567
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
.+..+...+...|++++|...|++..+.. +-+..++..+...|...|+ ...+...++... ...|....+...-.
T Consensus 90 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~a~~~~g~ 165 (208)
T 3urz_A 90 CLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS---SPTKMQYARYRDGL 165 (208)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHC------CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh---CCCchhHHHHHHHH
Confidence 88888888999999999999999888753 2346677777777765543 334455555443 22233333334445
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEV 282 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 282 (343)
++...|++++|...|++..+ ..|+......
T Consensus 166 ~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~ 195 (208)
T 3urz_A 166 SKLFTTRYEKARNSLQKVIL--RFPSTEAQKT 195 (208)
T ss_dssp HHHHHHTHHHHHHHHHHHTT--TSCCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHH--hCCCHHHHHH
Confidence 56667889999999998876 5677554433
No 110
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.63 E-value=4.4e-07 Score=71.42 Aligned_cols=155 Identities=10% Similarity=-0.069 Sum_probs=80.3
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhh----CCCCC-CHhhHHHHHHHHhcCCChhHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS----AECVP-DLESYSIVIGAMSTARKTNDA 225 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~~-~~~~~~~ll~~~~~~~~~~~a 225 (343)
++++|.++++.+.. .......++..+-..+...|++++|...+++... .+..| ...++..+...+...|++++|
T Consensus 7 ~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 85 (203)
T 3gw4_A 7 DYALAERQAQALLA-HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAA 85 (203)
T ss_dssp CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHH
Confidence 46666664444332 1122345566666666666777776666666543 11111 234455566666666666666
Q ss_pred HHHHHHHHhc---CCCCC--chhHHHHHHHHHHhCccHHHHHHHHHHHHHc---CCCCc--hhhHHHHHHHHHhcccHhH
Q 046547 226 VEMMKEMVLN---MGLMP--RQGMVIKVAAALRANREMWKAVEMIEFLERK---GCPIG--FQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 226 ~~~~~~m~~~---~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~--~~~~~~li~~~~~~g~~~~ 295 (343)
...+++...- .+-.| ....+..+...+...|++++|...+++..+. .-.+. ..++..+-..+...|++++
T Consensus 86 ~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 165 (203)
T 3gw4_A 86 RRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLE 165 (203)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHH
Confidence 6666665431 11111 1234555556666666666666666655421 00111 1223445555666666666
Q ss_pred HHHHHHHHhHC
Q 046547 296 AGKTVMGMTER 306 (343)
Q Consensus 296 a~~~~~~m~~~ 306 (343)
|.+.+++..+.
T Consensus 166 A~~~~~~al~~ 176 (203)
T 3gw4_A 166 AQQHWLRARDI 176 (203)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666655443
No 111
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.62 E-value=1.7e-06 Score=72.57 Aligned_cols=165 Identities=10% Similarity=-0.000 Sum_probs=123.3
Q ss_pred cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH-HH
Q 046547 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS-IV 212 (343)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~-~l 212 (343)
+...+..+-..+...| ++++|...|++..+.. +-+...+..+...+.+.|++++|...+++..... |+..... ..
T Consensus 116 ~~~~~~~~a~~~~~~g-~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~ 191 (287)
T 3qou_A 116 EEELXAQQAMQLMQES-NYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVA 191 (287)
T ss_dssp HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHH
T ss_pred chhhHHHHHHHHHhCC-CHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHH
Confidence 3444445555556655 6999999999987753 3356778888899999999999999999887653 4543322 22
Q ss_pred HHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCC-CchhhHHHHHHHHHhcc
Q 046547 213 IGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCP-IGFQGYEVVVEGCLECR 291 (343)
Q Consensus 213 l~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~li~~~~~~g 291 (343)
...+...++.++|+..+++... --+.+...+..+...+...|++++|...+.+..+..-. .+...+..+...|...|
T Consensus 192 ~~~l~~~~~~~~a~~~l~~al~--~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 192 QIELLXQAADTPEIQQLQQQVA--ENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHhhcccCccHHHHHHHHh--cCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 2336677888889999998885 33456778899999999999999999999999875321 12567888999999999
Q ss_pred cHhHHHHHHHHHh
Q 046547 292 EYILAGKTVMGMT 304 (343)
Q Consensus 292 ~~~~a~~~~~~m~ 304 (343)
+.++|...+++..
T Consensus 270 ~~~~a~~~~r~al 282 (287)
T 3qou_A 270 TGDALASXYRRQL 282 (287)
T ss_dssp TTCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHH
Confidence 9999988887654
No 112
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.62 E-value=9.7e-05 Score=69.10 Aligned_cols=133 Identities=11% Similarity=0.097 Sum_probs=84.7
Q ss_pred CCHHHHHHHHHHHhCccCcchHHHHHHHchhcCCCCChHHH----hhhhhhccc---chHHHHHHHHhcCCCCCCCChhh
Q 046547 29 SSLRTLEETVRAAVDAKDYQQIPELLGSFEEACQNPNPFSF----LSNFPQNHR---IKVIDEMLESFIPLRPRSRPKIA 101 (343)
Q Consensus 29 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~~p~~~~ 101 (343)
-+...|..++..+.+.+.++.+..+|+.+... -|....+ +..-...+. .+.+.++++......+..|++..
T Consensus 64 ~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~sv~L 141 (679)
T 4e6h_A 64 TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNNDLSL 141 (679)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCCHHH
T ss_pred CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCCHHH
Confidence 58889999999999999999999999998865 4554433 444445556 77888888887765544478888
Q ss_pred HHHHHHHHhhcCCCh--------HHHHHHHHHHH-hcCC-Ccc-HHHHHHHHHHHHh--------ccCchhHHHHHHHHH
Q 046547 102 YDYLLSYTLQSLHPL--------PLALAILQRTL-RSGC-VPV-PQIRLLLSSAWLE--------RRCQSQSVADILLEM 162 (343)
Q Consensus 102 ~~~li~~~~~~~~~~--------~~a~~~~~~m~-~~~~-~p~-~~~~~~li~~~~~--------~~~~~~~a~~~~~~m 162 (343)
|...+. +....++. +.+.++|+... ..|. .|+ ...|...+..... ..++++.+..+|+..
T Consensus 142 W~~Yl~-f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~ra 220 (679)
T 4e6h_A 142 WLSYIT-YVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYKTL 220 (679)
T ss_dssp HHHHHH-HHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHHHH
Confidence 888886 44333332 34457777755 3465 554 3566666643211 111245566666666
Q ss_pred Hh
Q 046547 163 KS 164 (343)
Q Consensus 163 ~~ 164 (343)
..
T Consensus 221 L~ 222 (679)
T 4e6h_A 221 LC 222 (679)
T ss_dssp TT
T ss_pred Hh
Confidence 53
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.62 E-value=1.2e-06 Score=80.80 Aligned_cols=153 Identities=15% Similarity=0.013 Sum_probs=111.7
Q ss_pred CCChHHHHHHHHHHHhcCCCcc-HHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPV-PQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
.|++++|.+.+++..+.. |+ ...+..+-..+...+ ++++|.+.+++..+.. +.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMG-DTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 378999999999987743 44 566666666766665 7999999999998753 335778889999999999999999
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC---ccHHHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN---REMWKAVEMIEFL 268 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~---~~~~~a~~~~~~m 268 (343)
+.|++..+.. +.+...+..+..++...|++++|.+.+++..+. .+.+...+..+..++... |+.++|.+.+++.
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQL--LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 9999988754 235778999999999999999999999999863 234567889999999999 9999999999999
Q ss_pred HHcC
Q 046547 269 ERKG 272 (343)
Q Consensus 269 ~~~g 272 (343)
.+.+
T Consensus 155 l~~~ 158 (568)
T 2vsy_A 155 VAQG 158 (568)
T ss_dssp HHHT
T ss_pred HhcC
Confidence 8754
No 114
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.61 E-value=2.3e-06 Score=64.79 Aligned_cols=128 Identities=9% Similarity=-0.147 Sum_probs=71.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
..+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.... .+.+...+..+..+
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 445555566666666666666666665532 224555666666666666666666666666542 23344556666666
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCchhhHH--HHHHHHHhcccHhHHHHHHHHH
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGFQGYE--VVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m 303 (343)
+...|++++|...+++..+..- .+...+. .+...+...|++++|.+.+...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 6666666666666666655321 1222222 2222255556666666665543
No 115
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.60 E-value=4.6e-07 Score=85.53 Aligned_cols=154 Identities=10% Similarity=-0.055 Sum_probs=130.1
Q ss_pred HccCcHHHHHHHHHHhh--------hCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHH
Q 046547 182 CAIDQLVEAAKVLKGMS--------SAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~ 253 (343)
...|++++|.+.+++.. +. .+.+...+..+..++...|++++|+..|++..+. -+-+...|..+-.++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--CcchHHHHHHHHHHHH
Confidence 77899999999999987 32 2335677888899999999999999999999852 2346678899999999
Q ss_pred hCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 254 ANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 254 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
..|++++|.+.|++..+. .| +...|..+-..|.+.|++++ .+.|++..+.+ +-+...|..+..+|.+.|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999874 34 45678888889999999999 99999988765 236778999999999999999999
Q ss_pred HHHHHHHhhc
Q 046547 333 VVRQRFAELK 342 (343)
Q Consensus 333 ~~~~~m~~~~ 342 (343)
+.|++..++.
T Consensus 555 ~~~~~al~l~ 564 (681)
T 2pzi_A 555 RTLDEVPPTS 564 (681)
T ss_dssp HHHHTSCTTS
T ss_pred HHHHhhcccC
Confidence 9999877664
No 116
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.59 E-value=6.2e-06 Score=69.19 Aligned_cols=166 Identities=6% Similarity=-0.127 Sum_probs=113.6
Q ss_pred HHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-----HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCC---CCC--Hh
Q 046547 138 RLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-----CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAEC---VPD--LE 207 (343)
Q Consensus 138 ~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~ 207 (343)
+...+..+...+ ++++|.+.+++..+.....+ ...+..+...+...|++++|...+++..+... .+. ..
T Consensus 78 l~~~~~~~~~~~-~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 78 FKDQVIMLCKQK-RYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHhh-hHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 334455555655 58888888877665432211 12233455566778899999999888765321 122 44
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHH---hcCCCCC--chhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCC-ch
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMV---LNMGLMP--RQGMVIKVAAALRANREMWKAVEMIEFLERK----GCPI-GF 277 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~---~~~~~~p--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~ 277 (343)
+|+.+...|...|++++|+..|++.. +..+-.+ ...++..+...|.+.|++++|...+++..+. +..+ -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78888899999999999999999877 2212222 1257888899999999999999999987642 1111 14
Q ss_pred hhHHHHHHHHHhcccHhHH-HHHHHHHh
Q 046547 278 QGYEVVVEGCLECREYILA-GKTVMGMT 304 (343)
Q Consensus 278 ~~~~~li~~~~~~g~~~~a-~~~~~~m~ 304 (343)
.+|..+-..|.+.|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 5777888889999999999 77777654
No 117
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.57 E-value=9.5e-06 Score=68.05 Aligned_cols=175 Identities=10% Similarity=-0.014 Sum_probs=120.0
Q ss_pred HHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh---hHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 158 ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE---SYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 158 ~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
.+..+......|+..+...+...+.-.-+ .++. .....+.. .+...+..+...|++++|..++++...
T Consensus 33 ~~s~~e~g~~~~~~~~l~~i~~~l~~~~~-----~~~~----~~~~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~ 103 (293)
T 3u3w_A 33 EVSRIESGAVYPSMDILQGIAAKLQIPII-----HFYE----VLIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELK 103 (293)
T ss_dssp HHHHHHTTSCCCCHHHHHHHHHHHTCCTH-----HHHH----TTTSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCCCCHHHHHHHHHHhCcCHH-----HHhC----CCCCCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence 34444443456777766666665543211 1121 11122222 233447788999999999999999986
Q ss_pred cCCCCCchh----HHHHHHHHHHhCccHHHHHHHHHHHHHcCCC-Cc----hhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 235 NMGLMPRQG----MVIKVAAALRANREMWKAVEMIEFLERKGCP-IG----FQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 235 ~~~~~p~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.....|+.. .+..+...+...+++++|...+++..+.... ++ ..+|+.+...|...|++++|...|++..+
T Consensus 104 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 183 (293)
T 3u3w_A 104 KEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILK 183 (293)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 433444432 3445667777888999999999999874322 22 22688888899999999999999999874
Q ss_pred C-----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 306 R-----GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 306 ~-----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
. +..| ...++..+...|.+.|++++|.+.+++..++
T Consensus 184 ~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~ 225 (293)
T 3u3w_A 184 QLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEI 225 (293)
T ss_dssp HHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 2 2222 2447889999999999999999999987764
No 118
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.57 E-value=3e-07 Score=69.05 Aligned_cols=143 Identities=10% Similarity=-0.169 Sum_probs=107.7
Q ss_pred HHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 178 VSSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 178 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
-..+...|++++|+..+...... .| +...+-.+-..|...|++++|++.|++..+. -+-+..+|..+-.+|.+.|
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 34456678999999999887653 23 3455667888999999999999999998852 3346788999999999999
Q ss_pred cHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHH-HHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 257 EMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKT-VMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 257 ~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
++++|...|++..+. .| +...|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999998874 45 456788888889999998876654 57776643 2256777766666666664
No 119
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.56 E-value=1.6e-06 Score=66.90 Aligned_cols=155 Identities=6% Similarity=-0.035 Sum_probs=88.3
Q ss_pred HHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH-HhcCCCh
Q 046547 144 AWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA-MSTARKT 222 (343)
Q Consensus 144 ~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~ 222 (343)
.+...| ++++|...+++..+.. +.+...+..+...+...|++++|...|++..... |+...+..+... +...+..
T Consensus 15 ~~~~~g-~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~~~~~~ 90 (176)
T 2r5s_A 15 ELLQQG-EHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELHQQAAE 90 (176)
T ss_dssp HHHHTT-CHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHHHHHTS
T ss_pred HHHHcC-CHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHHhhccc
Confidence 334443 4666666666654421 2234556666666666777777777666655432 233222221111 1111223
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~ 301 (343)
.+|+..+++..+. -+-+...+..+..++...|++++|...|++..+..-.+ +...+..+...+...|+.++|...|+
T Consensus 91 ~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~ 168 (176)
T 2r5s_A 91 SPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR 168 (176)
T ss_dssp CHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred chHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 3466677776642 22245667777777777888888888877777643221 23466677777777788777777776
Q ss_pred HHh
Q 046547 302 GMT 304 (343)
Q Consensus 302 ~m~ 304 (343)
+..
T Consensus 169 ~al 171 (176)
T 2r5s_A 169 RQL 171 (176)
T ss_dssp HHH
T ss_pred HHH
Confidence 554
No 120
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=98.55 E-value=6.2e-07 Score=67.29 Aligned_cols=136 Identities=13% Similarity=-0.004 Sum_probs=97.7
Q ss_pred cCchhHHHHHHHHHHhcCCcc-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 046547 149 RCQSQSVADILLEMKSIGYHP-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227 (343)
Q Consensus 149 ~~~~~~a~~~~~~m~~~g~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 227 (343)
.+++++|+..++..... .| +...+-.+-..|.+.|++++|.+.|++..+.. +-+..+|..+-.+|...|++++|+.
T Consensus 10 ~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~ 86 (150)
T 4ga2_A 10 KADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVE 86 (150)
T ss_dssp HHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHH
Confidence 34678888888776553 33 34456667788889999999999999888753 2357788888899999999999999
Q ss_pred HHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHH-HHHHHHcCCCCc-hhhHHHHHHHHHhcc
Q 046547 228 MMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEM-IEFLERKGCPIG-FQGYEVVVEGCLECR 291 (343)
Q Consensus 228 ~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~-~~~m~~~g~~p~-~~~~~~li~~~~~~g 291 (343)
.|+...+. -+-+..+|..+...|.+.|+.++|.+. +++..+ +.|+ ..+|...-..+...|
T Consensus 87 ~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 87 CYRRSVEL--NPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHH--CTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhC
Confidence 99988852 233567788888888888888766554 577666 3453 455665555555555
No 121
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=98.52 E-value=6.7e-06 Score=76.90 Aligned_cols=220 Identities=10% Similarity=-0.023 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHH-HHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHH
Q 046547 117 PLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVA-DILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLK 195 (343)
Q Consensus 117 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~-~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 195 (343)
+.+..+|++....- .-+...|-.....+... ++.++|. ++|+..... .+.+...|-..+...-+.|+++.|.++|+
T Consensus 326 ~Rv~~~Ye~aL~~~-p~~~~lW~~ya~~~~~~-~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 326 ARMTYVYMQAAQHV-CFAPEIWFNMANYQGEK-NTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHH-SCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHhc-CcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 44667888887642 23445555555544444 4577886 999998864 34455566677778888999999999999
Q ss_pred HhhhCC---------CCCC------------HhhHHHHHHHHhcCCChhHHHHHHHHHHhc-CCCCCchhHHHHHHHHHH
Q 046547 196 GMSSAE---------CVPD------------LESYSIVIGAMSTARKTNDAVEMMKEMVLN-MGLMPRQGMVIKVAAALR 253 (343)
Q Consensus 196 ~m~~~~---------~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~~~~~~~li~~~~ 253 (343)
++.+.. ..|+ ..+|...+....+.|..+.|..+|...... ....+......+.+. .
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE--~ 480 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIE--Y 480 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHH--H
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHH--H
Confidence 987631 0132 336777788888889999999999999863 122233333333333 2
Q ss_pred hC-ccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC--CHHHHHHHHHHHhccCChhH
Q 046547 254 AN-REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP--YIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 254 ~~-~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~~~ 330 (343)
+. ++.+.|..+|+...+. ++-+...+...+......|+.+.|..+|+........+ ....|...+.--.+.|+.+.
T Consensus 481 ~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 481 HISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred HhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 33 5599999999998875 33344455677787888999999999999988765322 34578888887888999999
Q ss_pred HHHHHHHHHhhc
Q 046547 331 ATVVRQRFAELK 342 (343)
Q Consensus 331 a~~~~~~m~~~~ 342 (343)
+.++.+++.+.-
T Consensus 560 ~~~v~~R~~~~~ 571 (679)
T 4e6h_A 560 VRTLEKRFFEKF 571 (679)
T ss_dssp HHHHHHHHHHHS
T ss_pred HHHHHHHHHHhC
Confidence 999999998754
No 122
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.51 E-value=5.9e-06 Score=58.87 Aligned_cols=95 Identities=11% Similarity=-0.002 Sum_probs=43.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 287 (343)
++..+...+...|++++|.++++++... .+.+..++..+...+.+.|++++|..+++++.+.. +.+..++..+...|
T Consensus 11 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 3444444444445555555544444431 12233344444444555555555555555444321 11233444444445
Q ss_pred HhcccHhHHHHHHHHHhH
Q 046547 288 LECREYILAGKTVMGMTE 305 (343)
Q Consensus 288 ~~~g~~~~a~~~~~~m~~ 305 (343)
...|++++|...++++.+
T Consensus 88 ~~~~~~~~A~~~~~~~~~ 105 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALE 105 (125)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHH
Confidence 555555555555555443
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.50 E-value=7.6e-06 Score=61.80 Aligned_cols=127 Identities=6% Similarity=-0.089 Sum_probs=58.0
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCL 288 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 288 (343)
+..+...+...|++++|...|+..... .+.+..++..+..++...|++++|...+++..+.. +.+...+..+...+.
T Consensus 16 ~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 16 LKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 444444455555555555555554431 12234445555555555555555555555544421 112334444444555
Q ss_pred hcccHhHHHHHHHHHhHCCCCCCHHHHH--HHHHHHhccCChhHHHHHHHHHH
Q 046547 289 ECREYILAGKTVMGMTERGFIPYIKVRQ--KVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
..|++++|...|++..+..- .+...+. .....+...|++++|.+.+++..
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 55555555555555444321 1222222 22222444555555555554443
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.47 E-value=6.2e-06 Score=59.32 Aligned_cols=117 Identities=12% Similarity=-0.097 Sum_probs=60.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 286 (343)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ 89 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA 89 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence 34444555555555555555555555531 22234455555555555666666666665555431 1123445555555
Q ss_pred HHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 287 CLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
|...|++++|.+.|++..+.. +.+...+..+...+.+.|+
T Consensus 90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 666666666666666555442 1234445555555555554
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.44 E-value=5.8e-06 Score=59.86 Aligned_cols=103 Identities=15% Similarity=0.016 Sum_probs=75.9
Q ss_pred CCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhH
Q 046547 202 CVPD-LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 202 ~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
+.|+ ...+...-..|.+.|++++|++.|++..+ --+.+..+|..+-.+|.+.|++++|...+++..+.. +.+...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVK--RDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 3344 35577777888888888888888888775 234466778888888888888888888888877642 1245577
Q ss_pred HHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 281 EVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
..+-..|...|++++|.+.|++..+..
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHC
Confidence 777778888888888888888877653
No 126
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.44 E-value=7.8e-06 Score=58.21 Aligned_cols=98 Identities=10% Similarity=-0.002 Sum_probs=69.1
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
...+..+...+...|++++|.+.|+++.+.. +.+..++..+...+...|++++|..+++++... .+.+..++..+..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~ 85 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGN 85 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHH
Confidence 4556666677777777777777777776543 234566777777777778888888888777752 2345666777777
Q ss_pred HHHhCccHHHHHHHHHHHHHc
Q 046547 251 ALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.+...|++++|...++++.+.
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 86 AYYKQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHh
Confidence 777888888888888777663
No 127
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.43 E-value=1.9e-06 Score=66.29 Aligned_cols=123 Identities=7% Similarity=-0.002 Sum_probs=92.4
Q ss_pred HHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH-HHhCccH-
Q 046547 181 LCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA-LRANREM- 258 (343)
Q Consensus 181 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~-~~~~~~~- 258 (343)
+...|++++|...+++..+.. +.+...+..+...|...|++++|...|++.... .+.+...+..+..+ +...|++
T Consensus 20 ~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~ 96 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHM 96 (177)
T ss_dssp CC-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCC
T ss_pred hhhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcc
Confidence 456788888999998877653 345678888889999999999999999998752 23356677777777 7788888
Q ss_pred -HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 259 -WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 259 -~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
++|...++...+.. +.+...+..+...|...|++++|...|++..+..
T Consensus 97 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 97 TAQTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 99999999888753 2245677778888999999999999999888764
No 128
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.42 E-value=8.1e-06 Score=59.03 Aligned_cols=96 Identities=13% Similarity=-0.030 Sum_probs=42.7
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 286 (343)
..+..+...+...|++++|...|++... -.+.+...+..+...+...|++++|...+++..+.. +.+...+..+...
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 3344444444444444444444444442 112233444444444444455555555544444321 1123344444444
Q ss_pred HHhcccHhHHHHHHHHHhH
Q 046547 287 CLECREYILAGKTVMGMTE 305 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~~ 305 (343)
|.+.|++++|.+.|++..+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
No 129
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.39 E-value=5.4e-06 Score=62.12 Aligned_cols=102 Identities=7% Similarity=-0.012 Sum_probs=79.0
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVV 284 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li 284 (343)
...+..+-..+...|++++|+..|+.... --+-+...|..+-.+|...|++++|...|++..+. .| +...|..+-
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg 111 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCI--YDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTG 111 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHH
Confidence 45667777888888999999999988885 23446777888888888889999999999888874 34 355777788
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCCCCCHH
Q 046547 285 EGCLECREYILAGKTVMGMTERGFIPYIK 313 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~~p~~~ 313 (343)
.+|...|++++|...|++..+.. |+..
T Consensus 112 ~~~~~lg~~~eA~~~~~~al~l~--~~~~ 138 (151)
T 3gyz_A 112 QCQLRLKAPLKAKECFELVIQHS--NDEK 138 (151)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence 88888999999999888887754 5543
No 130
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.36 E-value=5.3e-06 Score=65.06 Aligned_cols=155 Identities=9% Similarity=-0.032 Sum_probs=72.6
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHh----cCCcc-CHhhHHHHHHHHHccCcH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS----IGYHP-DCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~----~g~~~-~~~~~~~ll~~~~~~~~~ 187 (343)
.|++++|.+.++.... ........+..+-..+...+ ++++|...+++..+ .|..| ...++..+-..+...|++
T Consensus 5 ~g~~~~A~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 5 AHDYALAERQAQALLA-HPATASGARFMLGYVYAFMD-RFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp --CHHHHHHHHHHHHT-STTTHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 3566666664433322 11123334444444444433 46666666555543 11111 234455555556666666
Q ss_pred HHHHHHHHHhhhC----CCCC--CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCC-chhHHHHHHHHHHhCcc
Q 046547 188 VEAAKVLKGMSSA----ECVP--DLESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMP-RQGMVIKVAAALRANRE 257 (343)
Q Consensus 188 ~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~~~~li~~~~~~~~ 257 (343)
++|...+++..+. +-.| ...++..+...+...|++++|...+++.... .+..+ -..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 6666666554432 1111 1234555555566666666666666655421 11111 01224555555666666
Q ss_pred HHHHHHHHHHHH
Q 046547 258 MWKAVEMIEFLE 269 (343)
Q Consensus 258 ~~~a~~~~~~m~ 269 (343)
+++|.+.+++..
T Consensus 163 ~~~A~~~~~~al 174 (203)
T 3gw4_A 163 LLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 666666655543
No 131
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.36 E-value=0.00048 Score=62.16 Aligned_cols=170 Identities=11% Similarity=-0.030 Sum_probs=84.3
Q ss_pred HHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 155 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
+..+|++.... .+.+...|-..+..+.+.|++++|..+|++.... |....... .|+...+.++. ++.+.+
T Consensus 198 v~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e~~~~---~~~l~~ 267 (493)
T 2uy1_A 198 MHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMDEEAV---YGDLKR 267 (493)
T ss_dssp HHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTTCTHH---HHHHHH
T ss_pred HHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcchhHH---HHHHHH
Confidence 44566665553 2344566777777777888999999999988876 43322111 12111111111 222221
Q ss_pred cC--------CC---CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHH--HHHHHHHhcccHhHHHHHHH
Q 046547 235 NM--------GL---MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYE--VVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 235 ~~--------~~---~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~--~li~~~~~~g~~~~a~~~~~ 301 (343)
.. +. .....+|...+....+.++.+.|..+|+.. ... ..+...|. +.+... ..++.+.|..+|+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~-~~~d~~~ar~ife 344 (493)
T 2uy1_A 268 KYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYY-ATGSRATPYNIFS 344 (493)
T ss_dssp HTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHH-HHCCSHHHHHHHH
T ss_pred HHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHH-HCCChHHHHHHHH
Confidence 10 00 011234555555555666677777777766 211 11222332 112211 1224677777777
Q ss_pred HHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 302 GMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 302 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
...+.. +-+...+...++-..+.|+.+.|..+|++.
T Consensus 345 ~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 345 SGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 665542 112333444455555566666666666553
No 132
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.35 E-value=3.1e-05 Score=57.93 Aligned_cols=102 Identities=8% Similarity=-0.025 Sum_probs=80.7
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
...+..+-..+.+.|++++|...|++..... +-+...|..+-.+|...|++++|+..|++...- -+-+...|..+-.
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l--~P~~~~~~~~lg~ 112 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL--GKNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CCCCcHHHHHHHH
Confidence 4566777778888999999999999888753 235777888888899999999999999988852 2335677888888
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCch
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~ 277 (343)
+|.+.|++++|...|+...+. .|+.
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l--~~~~ 137 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQH--SNDE 137 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CCCH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCH
Confidence 899999999999999988874 3554
No 133
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.35 E-value=1.1e-05 Score=57.97 Aligned_cols=119 Identities=11% Similarity=-0.040 Sum_probs=81.2
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 249 (343)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...++..... .+.+...+..+.
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~ 87 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICI--DPAYSKAYGRMG 87 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhc--CccCHHHHHHHH
Confidence 34566667777777888888888888776543 235666777777788888888888888887752 233466777777
Q ss_pred HHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 250 AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
..+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 88 ~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 88 LALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 78888888888888888777642 1234455555556655554
No 134
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.35 E-value=3.1e-06 Score=63.29 Aligned_cols=109 Identities=11% Similarity=-0.046 Sum_probs=84.5
Q ss_pred HHHHhhhCCCCC-CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 193 VLKGMSSAECVP-DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 193 ~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.|++.... .| +...+..+...+...|++++|+..|+.... --+.+...|..+-.+|...|++++|...|++....
T Consensus 9 ~~~~al~~--~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l 84 (148)
T 2vgx_A 9 TIAMLNEI--SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCV--LDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM 84 (148)
T ss_dssp SHHHHTTC--CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHcC--CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHH--cCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 44444432 34 355677788889999999999999999885 33446778888888999999999999999998874
Q ss_pred CCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 272 GCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 272 g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
. +.+...+..+-..|...|++++|.+.|++..+.
T Consensus 85 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 85 D-IXEPRFPFHAAECLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp S-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred C-CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 3 124567777888899999999999999988765
No 135
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.35 E-value=1.6e-05 Score=57.34 Aligned_cols=116 Identities=12% Similarity=-0.065 Sum_probs=78.3
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 249 (343)
+...+..+...+...|++++|...|++..+.. +.+..++..+...+...|++++|...+++.... .+.+...+..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la 91 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQL--EPTFIKGYTRKA 91 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCchHHHHHHH
Confidence 45566777777777888888888888776643 235667777777788888888888888877752 233566777777
Q ss_pred HHHHhCccHHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhc
Q 046547 250 AALRANREMWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLEC 290 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~ 290 (343)
.++.+.|++++|.+.+++..+. .|+ ...+..+...+...
T Consensus 92 ~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~ 131 (133)
T 2lni_A 92 AALEAMKDYTKAMDVYQKALDL--DSSCKEAADGYQRCMMAQ 131 (133)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CGGGTHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHh
Confidence 7888888888888888877663 232 23444444444433
No 136
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.34 E-value=1.2e-05 Score=61.82 Aligned_cols=115 Identities=8% Similarity=0.013 Sum_probs=56.7
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHH-HhcCCCh--hHHHHH
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGA-MSTARKT--NDAVEM 228 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--~~a~~~ 228 (343)
+++|...++...+.. +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ ++|...
T Consensus 26 ~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A~~~ 103 (177)
T 2e2e_A 26 PEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQTRAM 103 (177)
T ss_dssp -CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 444444454444321 2233445555555555555555555555554432 1233444444444 4455555 566666
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 229 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
++..... .+.+...+..+...+...|++++|...+++..+
T Consensus 104 ~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 104 IDKALAL--DSNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHh--CCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 6555532 122344455555555666666666666665554
No 137
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.33 E-value=1.5e-05 Score=57.64 Aligned_cols=101 Identities=14% Similarity=-0.056 Sum_probs=75.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
..+...-..|.+.|++++|.+.|++..+.. +.+..+|..+..++...|++++|+..|+...+ --+.+...|..+-.+
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~ 90 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIR--LDSKFIKGYIRKAAC 90 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHH--hhhhhhHHHHHHHHH
Confidence 456667777888888888888888877653 23567778888888888888888888888775 223456678888888
Q ss_pred HHhCccHHHHHHHHHHHHHcCCCCch
Q 046547 252 LRANREMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 252 ~~~~~~~~~a~~~~~~m~~~g~~p~~ 277 (343)
+...|++++|.+.|++..+ +.|+.
T Consensus 91 ~~~~~~~~~A~~~~~~al~--l~P~~ 114 (126)
T 4gco_A 91 LVAMREWSKAQRAYEDALQ--VDPSN 114 (126)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTC
T ss_pred HHHCCCHHHHHHHHHHHHH--HCcCC
Confidence 8888888888888888776 34543
No 138
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.31 E-value=1.8e-05 Score=67.77 Aligned_cols=130 Identities=10% Similarity=-0.126 Sum_probs=93.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--------------HhhHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD--------------LESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 236 (343)
...+..+-..|.+.|++++|...|++..+...... ..+|..+..+|.+.|++++|+..++...+.
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 225 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 225 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 45667777777788888888888887766432211 467788888888888888888888888752
Q ss_pred CCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHH-HHHHHHHh
Q 046547 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILA-GKTVMGMT 304 (343)
Q Consensus 237 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 304 (343)
-+.+...|..+-.+|...|++++|...|++..+. .| +...+..+...+.+.|+.++| ..+++.|.
T Consensus 226 -~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 226 -DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL--YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2346677888888888888888888888887764 34 455677777778888888877 34555553
No 139
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.31 E-value=8.6e-06 Score=67.94 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=37.4
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV 188 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~ 188 (343)
+...|++++|...|++..+.. | +...|..+-..+.+.+ ++++|...+++..+.. +.+...+..+..+|...|+++
T Consensus 14 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~-~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~ 89 (281)
T 2c2l_A 14 LFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQ-QPEQALADCRRALELD-GQSVKAHFFLGQCQLEMESYD 89 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 334455555555555554432 2 2333333333333332 3555555555544321 122334444444455555555
Q ss_pred HHHHHHHHhh
Q 046547 189 EAAKVLKGMS 198 (343)
Q Consensus 189 ~a~~~~~~m~ 198 (343)
+|...|++..
T Consensus 90 ~A~~~~~~al 99 (281)
T 2c2l_A 90 EAIANLQRAY 99 (281)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
No 140
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.30 E-value=1.7e-05 Score=55.29 Aligned_cols=94 Identities=7% Similarity=-0.041 Sum_probs=42.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC---chhhHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI---GFQGYEVVV 284 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~li 284 (343)
.+..+...+...|++++|...++...+. .+.+...+..+...+...|++++|.+.+++..+. .| +...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~l~ 83 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINV--IEDEYNKDVWAAKA 83 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--SCCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CcccchHHHHHHHH
Confidence 3444444455555555555555554431 1223344444444455555555555555544442 12 233444444
Q ss_pred HHHHhc-ccHhHHHHHHHHHhH
Q 046547 285 EGCLEC-REYILAGKTVMGMTE 305 (343)
Q Consensus 285 ~~~~~~-g~~~~a~~~~~~m~~ 305 (343)
..+... |++++|.+.+++...
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 84 DALRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HHHTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHHHhCCHHHHHHHHHHHhh
Confidence 444444 455555554444443
No 141
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.27 E-value=1.9e-05 Score=67.70 Aligned_cols=130 Identities=9% Similarity=-0.078 Sum_probs=108.8
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc----------------hhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----------------QGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----------------~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+...+..+-..+.+.|++++|+..|++.... . |+ ...|..+..+|.+.|++++|...+++.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~-~--p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSW-L--EYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-T--TTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-h--hccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888889999999999999999998863 2 33 478999999999999999999999999
Q ss_pred HHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHH-HHHHHHHH
Q 046547 269 ERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA-TVVRQRFA 339 (343)
Q Consensus 269 ~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a-~~~~~~m~ 339 (343)
.+.. +.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++| .+.|+.|.
T Consensus 223 l~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 223 LELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8853 2356788888999999999999999999998764 23677888999999999999999 45666654
No 142
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.26 E-value=2.2e-05 Score=56.45 Aligned_cols=98 Identities=18% Similarity=0.054 Sum_probs=73.8
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 285 (343)
...+..+-..+...|++++|+..|++..+. .+.+...|..+..++.+.|++++|...+++..+.. +.+...|..+-.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 445667777888888888888888888752 33456778888888888888888888888887743 123556777777
Q ss_pred HHHhcccHhHHHHHHHHHhHC
Q 046547 286 GCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.+...|++++|...|++..+.
T Consensus 81 ~~~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 81 AQIAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHHh
Confidence 888888888888888877654
No 143
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.26 E-value=2.5e-05 Score=54.85 Aligned_cols=100 Identities=13% Similarity=-0.050 Sum_probs=79.4
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
....+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...+++..+.. +.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence 3456777888888999999999999998853 33467778888888889999999999999887743 22466777888
Q ss_pred HHHHhcccHhHHHHHHHHHhHCC
Q 046547 285 EGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
..+...|++++|.+.+++..+.+
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhhHHHHHHHHHHHHHcC
Confidence 88899999999999998887654
No 144
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.26 E-value=4.3e-05 Score=63.03 Aligned_cols=205 Identities=9% Similarity=-0.085 Sum_probs=129.0
Q ss_pred hhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc-HHHHHHHH-------HHHHhccCchhHHHHHHHHHHhcCCccCH
Q 046547 100 IAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-PQIRLLLS-------SAWLERRCQSQSVADILLEMKSIGYHPDC 171 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li-------~~~~~~~~~~~~a~~~~~~m~~~g~~~~~ 171 (343)
..|..-+. + ..++...|.+.|.+..+.. |+ ...|+-++ ..+....+ ..+++..+.. ..++.|+.
T Consensus 9 ~~~~~~~~--~-~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r-~~~a~~~~~~--~l~l~p~~ 80 (282)
T 4f3v_A 9 SLFESAVS--M-LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWY-SRRNFGQLSG--SVQISMST 80 (282)
T ss_dssp HHHHHHHH--H-TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHH-TGGGTTHHHH--TTTCCGGG
T ss_pred HHHHHHhc--c-cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHH-HHHHHHHHHH--HhcCChhh
Confidence 34555553 3 4689999999999998854 43 34455443 12222111 1222222222 22333321
Q ss_pred ----------------------hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHH
Q 046547 172 ----------------------GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMM 229 (343)
Q Consensus 172 ----------------------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 229 (343)
..+-.+...+...|++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|
T Consensus 81 l~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 81 LNARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp GCCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhhhccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 122335566788899999999999887654 44335555666888999999999999
Q ss_pred HHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc--hhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 230 KEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG--FQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 230 ~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+..... . .|. ...+..+-.++...|++++|+..|++.......|. .......-.++.+.|+.++|...|+++..
T Consensus 159 ~~a~~~-~-d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a 236 (282)
T 4f3v_A 159 KSAGKW-P-DKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQT 236 (282)
T ss_dssp TTGGGC-S-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHhhcc-C-CcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 855431 1 221 23677778888999999999999998875433254 22344455668889999999999999987
Q ss_pred CCCCCCHHHHHHH
Q 046547 306 RGFIPYIKVRQKV 318 (343)
Q Consensus 306 ~g~~p~~~~~~~l 318 (343)
.. |+...+..|
T Consensus 237 ~~--P~~~~~~aL 247 (282)
T 4f3v_A 237 TH--PEPKVAAAL 247 (282)
T ss_dssp HS--CCHHHHHHH
T ss_pred cC--CcHHHHHHH
Confidence 64 554444443
No 145
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.25 E-value=2.3e-05 Score=57.10 Aligned_cols=100 Identities=10% Similarity=-0.093 Sum_probs=81.2
Q ss_pred CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHH
Q 046547 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283 (343)
Q Consensus 204 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 283 (343)
.+...+..+...+...|++++|+..|+..... .+.+...|..+..++...|++++|...++...+.. +.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHH
Confidence 45677888888999999999999999998853 33456788888889999999999999999888743 2245677788
Q ss_pred HHHHHhcccHhHHHHHHHHHhHC
Q 046547 284 VEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
...|...|++++|...|++..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHHH
Confidence 88899999999999999887754
No 146
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.25 E-value=1.9e-05 Score=59.90 Aligned_cols=99 Identities=14% Similarity=0.045 Sum_probs=82.1
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
+...+..+...+...|++++|+..|++.... .+-+...|..+..+|.+.|++++|...+++..+.. +-+...|..+-
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg 86 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLG 86 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4567888888999999999999999998853 23467788899999999999999999999988753 22466788888
Q ss_pred HHHHhcccHhHHHHHHHHHhHC
Q 046547 285 EGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
..|...|++++|.+.|++..+.
T Consensus 87 ~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 87 LARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHh
Confidence 8899999999999999988765
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=2.9e-05 Score=57.22 Aligned_cols=109 Identities=9% Similarity=-0.099 Sum_probs=85.0
Q ss_pred CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh
Q 046547 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279 (343)
Q Consensus 204 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 279 (343)
.+...+..+...+...|++++|...|++..+ ..|+ ...+..+..+|...|++++|...+++..+.. +.+...
T Consensus 26 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~ 101 (148)
T 2dba_A 26 SSVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKA 101 (148)
T ss_dssp CCHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHH
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHH
Confidence 3566788888899999999999999999884 2455 6778888889999999999999999887742 224567
Q ss_pred HHHHHHHHHhcccHhHHHHHHHHHhHCCCCC-CHHHHHHH
Q 046547 280 YEVVVEGCLECREYILAGKTVMGMTERGFIP-YIKVRQKV 318 (343)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~l 318 (343)
+..+...|...|++++|.+.|++..+.. | +...+..+
T Consensus 102 ~~~~a~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 139 (148)
T 2dba_A 102 LYRRSQALEKLGRLDQAVLDLQRCVSLE--PKNKVFQEAL 139 (148)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--SSCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCcHHHHHHH
Confidence 7778888999999999999999887653 4 34444433
No 148
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.23 E-value=0.00032 Score=59.73 Aligned_cols=224 Identities=8% Similarity=-0.084 Sum_probs=139.0
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHcc-C-
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVPVPQI-RLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAI-D- 185 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~-~- 185 (343)
...+....++|+++++++.... |+..| |+.--..+...+..++++++.++.+.... +-+..+|+.--..+.+. +
T Consensus 63 ~~~~~e~se~AL~lt~~~L~~n--P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~ 139 (349)
T 3q7a_A 63 IAAKEEKSERALELTEIIVRMN--PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQ 139 (349)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCS
T ss_pred HHHhCCCCHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCC
Confidence 3445455678899998888744 65544 44433333333335788888888887653 33455666555555554 5
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChh--------HHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTN--------DAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE 257 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--------~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~ 257 (343)
++++++++++++.+.. +-|-.+|+--.-.+...|.++ ++++.++++.+. -+-|...|+-.-..+.+.++
T Consensus 140 ~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~--dp~N~SAW~~R~~lL~~l~~ 216 (349)
T 3q7a_A 140 DPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRV--DGRNNSAWGWRWYLRVSRPG 216 (349)
T ss_dssp CCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHTTSTT
T ss_pred ChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccc
Confidence 7788888888888654 235555554444444444455 888888888863 23466677777666666665
Q ss_pred -------HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccH--------------------hHHHHHHHHHhHCC---
Q 046547 258 -------MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREY--------------------ILAGKTVMGMTERG--- 307 (343)
Q Consensus 258 -------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~--------------------~~a~~~~~~m~~~g--- 307 (343)
++++++.+++...... -|...|+-+-..+.+.|+. .....+..++...+
T Consensus 217 ~~~~~~~~~eELe~~~~aI~~~P-~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (349)
T 3q7a_A 217 AETSSRSLQDELIYILKSIHLIP-HNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPE 295 (349)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCS
T ss_pred cccchHHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhccccc
Confidence 6788888888777432 2455666555555555543 23333333333322
Q ss_pred --CCCCHHHHHHHHHHHhccCChhHHHHHHHHHH
Q 046547 308 --FIPYIKVRQKVVEGLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 308 --~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 339 (343)
-.++......|.+.|...|+.++|.++++.+.
T Consensus 296 ~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 296 DTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp SCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 13577788888899999999999999998885
No 149
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.23 E-value=1.8e-05 Score=58.52 Aligned_cols=98 Identities=11% Similarity=-0.089 Sum_probs=79.4
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 285 (343)
...+..+...+...|++++|...|+.... .-+.+...|..+-.++.+.|++++|...|+...+.. +.+...+..+-.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 94 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCM--LDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAE 94 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHH
Confidence 44566677888899999999999999885 334467778888899999999999999999988753 224556777888
Q ss_pred HHHhcccHhHHHHHHHHHhHC
Q 046547 286 GCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.|...|++++|.+.|++..+.
T Consensus 95 ~~~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 95 CHLQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh
Confidence 899999999999999988765
No 150
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.21 E-value=1.2e-05 Score=60.17 Aligned_cols=134 Identities=10% Similarity=-0.092 Sum_probs=75.1
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc----hhHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCC-chh
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR----QGMVIKVAAALRANREMWKAVEMIEFLERK----GCPI-GFQ 278 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~ 278 (343)
++..+...+...|++++|...+++......-.++ ..++..+...+...|++++|.+.+++..+. +-.+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 4445555555566666666655554431000011 134555666666666666666666665432 1111 123
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCC-CHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTER----GFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
++..+...+...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..++
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~ 158 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI 158 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4555666677777777777777765432 2111 2345667777778888888888888776654
No 151
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.21 E-value=0.0002 Score=63.31 Aligned_cols=165 Identities=7% Similarity=-0.092 Sum_probs=74.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCC-CCCCH----hhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCC-chhH
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAE-CVPDL----ESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMP-RQGM 244 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~~~ 244 (343)
+..+...|...|++++|.+.+......- ..++. .+.+.+-..+...|+.+.|..++.....- .+..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555543210 01111 11222222333445555555555544320 11111 1234
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHc--CC--CC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHC----CCCCC--HH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERK--GC--PI-GFQGYEVVVEGCLECREYILAGKTVMGMTER----GFIPY--IK 313 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~--g~--~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----g~~p~--~~ 313 (343)
+..+...|...|++++|..++.+.... +. .| ...+|..++..|...|++++|..++++.... +..|. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 555555556666666666655554421 11 11 1224555555566666666666665554321 11111 23
Q ss_pred HHHHHHHHHhccCChhHHHHHHHHH
Q 046547 314 VRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 314 ~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
.+..+...+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3444445555556666665555443
No 152
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.21 E-value=1.3e-05 Score=57.58 Aligned_cols=96 Identities=10% Similarity=-0.046 Sum_probs=46.1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC--CCc----hhhHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGC--PIG----FQGYEV 282 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~----~~~~~~ 282 (343)
+..+...+...|++++|...|+..... .+.+...+..+...+...|++++|...++...+..- .++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 444444455555555555555554431 122344445555555555555555555555443210 111 334444
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHC
Q 046547 283 VVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+...|...|++++|.+.|++..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh
Confidence 555555555666666555555543
No 153
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.20 E-value=2.9e-05 Score=54.00 Aligned_cols=95 Identities=9% Similarity=-0.064 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCC--CHHHHHHHHHH
Q 046547 244 MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIP--YIKVRQKVVEG 321 (343)
Q Consensus 244 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~~ 321 (343)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 34444444555555555555555544422 1123344444445555555555555555544432 11 24444555555
Q ss_pred Hhcc-CChhHHHHHHHHHHh
Q 046547 322 LAGV-GEWKLATVVRQRFAE 340 (343)
Q Consensus 322 ~~~~-g~~~~a~~~~~~m~~ 340 (343)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555444
No 154
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.19 E-value=2.9e-05 Score=56.20 Aligned_cols=94 Identities=10% Similarity=-0.062 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC--CCCc----hhhHHHH
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG--CPIG----FQGYEVV 283 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~----~~~~~~l 283 (343)
..+-..+.+.|++++|+..|++..+- -+-+...|+.+-.+|.+.|++++|++.+++..+.. ..++ ..+|..+
T Consensus 12 ~~lG~~~~~~~~~~~A~~~y~~Al~~--~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 12 KDLGNAAYKQKDFEKAHVHYDKAIEL--DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 33444444444444444444444421 11223344444444444444444444444443210 0000 1133344
Q ss_pred HHHHHhcccHhHHHHHHHHHhH
Q 046547 284 VEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~ 305 (343)
-..+...|++++|++.|++...
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4445555555555555555443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.19 E-value=7.6e-05 Score=52.31 Aligned_cols=99 Identities=13% Similarity=-0.072 Sum_probs=77.6
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVA 249 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li 249 (343)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+++.... .+.+...+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a 79 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDL--KPDWGKGYSRKA 79 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHh--CcccHHHHHHHH
Confidence 34567777788888899999999998887653 235677788888888889999999998888752 234567788888
Q ss_pred HHHHhCccHHHHHHHHHHHHHc
Q 046547 250 AALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.++...|++++|.+.++...+.
T Consensus 80 ~~~~~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 80 AALEFLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHhhHHHHHHHHHHHHHc
Confidence 8888899999999988888763
No 156
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.16 E-value=0.00062 Score=57.15 Aligned_cols=185 Identities=9% Similarity=-0.049 Sum_probs=104.9
Q ss_pred ChHHHHHHHHHHHhcCCCccH-HHHHHHHHHH----Hhcc--CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 115 PLPLALAILQRTLRSGCVPVP-QIRLLLSSAW----LERR--CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 115 ~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~----~~~~--~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
+++++++.++.+.... |.. .+|+---..+ ...+ +++++++++++.+.+.. +-+..+|+.-...+.+.|++
T Consensus 84 ~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~ 160 (306)
T 3dra_A 84 NLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLH 160 (306)
T ss_dssp CHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCT
T ss_pred cHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccc
Confidence 6777777777766543 322 2222221111 1110 34666777777776542 33445555555555555666
Q ss_pred H--HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC------hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 188 V--EAAKVLKGMSSAECVPDLESYSIVIGAMSTARK------TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 188 ~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
+ ++++.++++.+... -|-..|+.--..+...++ ++++++.++.+.. --+-|...|+-+-..+.+.|+..
T Consensus 161 ~~~~EL~~~~~~i~~d~-~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~--~~p~n~SaW~y~~~ll~~~~~~~ 237 (306)
T 3dra_A 161 NDAKELSFVDKVIDTDL-KNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIV--KCPQNPSTWNYLLGIHERFDRSI 237 (306)
T ss_dssp TCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCCG
T ss_pred ChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHH--hCCCCccHHHHHHHHHHhcCCCh
Confidence 5 77777777766543 245555554445555554 6777777777764 33445666666666666666533
Q ss_pred -HHHHHHHHHHHcC--CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 260 -KAVEMIEFLERKG--CPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 260 -~a~~~~~~m~~~g--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
.+..+..+..+.+ -..+......+...|.+.|+.++|.++++.+.+
T Consensus 238 ~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 238 TQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp GGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 3444555544322 123455666777777777888888888887765
No 157
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.15 E-value=2.2e-05 Score=56.40 Aligned_cols=99 Identities=6% Similarity=-0.062 Sum_probs=61.6
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC-CCCc----hhHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMG-LMPR----QGMVI 246 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~p~----~~~~~ 246 (343)
..+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++....... ..++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666666777777777777666543 23455666666667777777777777776654200 0111 55666
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 247 KVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.+..++...|++++|.+.|+...+.
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHh
Confidence 6677777777777777777776663
No 158
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.13 E-value=1.5e-05 Score=66.40 Aligned_cols=193 Identities=7% Similarity=-0.163 Sum_probs=127.1
Q ss_pred cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
+...+..+-..+...+ ++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+.. +-+...+..+.
T Consensus 3 ~a~~~~~~g~~~~~~g-~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGR-KYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence 4455666666666665 6999999999998753 3367888889999999999999999999988753 33577888899
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCch-hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQ-GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE 292 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 292 (343)
.++...|++++|...|+...+. .|+. ..+...+....+. .++.. +..........+......+ ..+ ..|+
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~ 150 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAE 150 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHH
Confidence 9999999999999999987752 2221 1222222222221 11111 2223333344444443333 333 3799
Q ss_pred HhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhcc-CChhHHHHHHHHHHh
Q 046547 293 YILAGKTVMGMTERGFIPYI-KVRQKVVEGLAGV-GEWKLATVVRQRFAE 340 (343)
Q Consensus 293 ~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~~-g~~~~a~~~~~~m~~ 340 (343)
.++|.+.+++..+. .|+. .....+-..+.+. +.+++|.++|++..+
T Consensus 151 ~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 151 RERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999999887754 4543 3334444444444 678899999987654
No 159
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.13 E-value=1.6e-05 Score=59.40 Aligned_cols=134 Identities=11% Similarity=-0.091 Sum_probs=84.5
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC-CC----HhhHHHHHHHHhcCCChhHHHHHHHHHHhc---CCCCC-ch
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PD----LESYSIVIGAMSTARKTNDAVEMMKEMVLN---MGLMP-RQ 242 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~~p-~~ 242 (343)
.++..+-..+...|++++|...+++..+.... ++ ..++..+...+...|++++|...+++.... .+-.+ ..
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 45566666667777777777777665542110 11 135666777777778888887777775531 11111 13
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHc----CCCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERK----GCPI-GFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
..+..+...+...|++++|.+.+++..+. +..+ ...++..+...|...|++++|.+.+++..+
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45667777778888888888888776532 2111 133566677778888888888888887654
No 160
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.12 E-value=6.8e-05 Score=53.83 Aligned_cols=97 Identities=15% Similarity=0.061 Sum_probs=68.7
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
...+..+-..+.+.|++++|...|++..+.. +.+...|..+..++...|++++|+..++...+. -+.+...|..+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~ 80 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEK--DPNFVRAYIRKAT 80 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCcHHHHHHHHH
Confidence 3455666667777788888888887776643 235667777777778888888888888877752 2334566777777
Q ss_pred HHHhCccHHHHHHHHHHHHH
Q 046547 251 ALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~ 270 (343)
++...|++++|...|++..+
T Consensus 81 ~~~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 81 AQIAVKEYASALETLDAART 100 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCHHHHHHHHHHHHH
Confidence 78888888888888877665
No 161
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.10 E-value=3.3e-05 Score=55.90 Aligned_cols=107 Identities=8% Similarity=-0.033 Sum_probs=75.0
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhc-CCCCCc----hhHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLN-MGLMPR----QGMV 245 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~----~~~~ 245 (343)
...+..+...+.+.|++++|++.|++..+.. +-+..+|+.+-.+|...|++++|++.+++..+- ....++ ..+|
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 3456677788888888888888888877653 234677888888888888888888888877641 011111 2356
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhH
Q 046547 246 IKVAAALRANREMWKAVEMIEFLERKGCPIGFQGY 280 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 280 (343)
..+-.++...|++++|.+.|++..+ ..||..+.
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~ 119 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLS--EFRDPELV 119 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHH
Confidence 6677778888888888888888766 34555443
No 162
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.10 E-value=0.0033 Score=53.19 Aligned_cols=222 Identities=8% Similarity=-0.059 Sum_probs=144.8
Q ss_pred cCCChH-HHHHHHHHHHhcCCCccHHH-HHHHHHHHHhccC---------chhHHHHHHHHHHhcCCccCHhhHHHHHHH
Q 046547 112 SLHPLP-LALAILQRTLRSGCVPVPQI-RLLLSSAWLERRC---------QSQSVADILLEMKSIGYHPDCGTCNYLVSS 180 (343)
Q Consensus 112 ~~~~~~-~a~~~~~~m~~~~~~p~~~~-~~~li~~~~~~~~---------~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~ 180 (343)
+.|.++ +|++.++.+... .|+..| |+.--..+...+. .+++++.+++.+.... +-+..+|+.--..
T Consensus 41 ~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wl 117 (331)
T 3dss_A 41 QAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWL 117 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 445554 789999999874 476655 3322212111111 1567888888887643 3356677766666
Q ss_pred HHccC--cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC--
Q 046547 181 LCAID--QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN-- 255 (343)
Q Consensus 181 ~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-- 255 (343)
+.+.| ++++++.+++.+.+... -|-..|+---..+...|. ++++++.++.+.+. -+-|...|+-.-..+.+.
T Consensus 118 L~~l~~~~~~~EL~~~~k~l~~dp-rNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~--~p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 118 LSRLPEPNWARELELCARFLEADE-RNFHCWDYRRFVAAQAAVAPAEELAFTDSLITR--NFSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHCSSCCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHHSC
T ss_pred HhccCcccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhhh
Confidence 66666 48999999999987643 366677766666677777 58999999999863 344666666655555443
Q ss_pred ------------ccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhc-----------ccHhHHHHHHHHHhHCCCCCC
Q 046547 256 ------------REMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLEC-----------REYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 256 ------------~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~g~~p~ 311 (343)
+.++++++.+...... .| |...|+-+-..+.+. +.++++++.++++.+.. ||
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~--~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~--pd 270 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFT--DPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE--PE 270 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC--TT
T ss_pred ccccccccccchHHHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC--cc
Confidence 5688899999988874 34 445555444344443 46788999999988754 54
Q ss_pred H-HHHHH---HHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 312 I-KVRQK---VVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 312 ~-~~~~~---li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
. .++-+ +..+....|..+++...++++.+++|
T Consensus 271 ~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp 306 (331)
T 3dss_A 271 NKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDP 306 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCG
T ss_pred cchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCc
Confidence 2 22222 22233356888899999999998875
No 163
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.09 E-value=0.00023 Score=52.18 Aligned_cols=98 Identities=7% Similarity=-0.129 Sum_probs=81.8
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD----LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMV 245 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~ 245 (343)
+...+..+...+...|++++|.+.|++..+.. |+ ...+..+..++...|++++|+..++..... .+.+...+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~ 102 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEK--DGGDVKAL 102 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TSCCHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhh--CccCHHHH
Confidence 56677888888999999999999999988753 55 677888888999999999999999998853 23456778
Q ss_pred HHHHHHHHhCccHHHHHHHHHHHHHc
Q 046547 246 IKVAAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 246 ~~li~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
..+..++...|++++|...|++..+.
T Consensus 103 ~~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 103 YRRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 88888999999999999999998874
No 164
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.09 E-value=0.00013 Score=60.15 Aligned_cols=191 Identities=9% Similarity=-0.090 Sum_probs=113.3
Q ss_pred hcccchHHHHHHHHhcCCCCCCCChhhHHHHHH------HHhhcCCChHHHHHHHHHHHhcCCCccHHHH--H-------
Q 046547 75 QNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLS------YTLQSLHPLPLALAILQRTLRSGCVPVPQIR--L------- 139 (343)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~--~------- 139 (343)
..++...+.+.+.....+.|. ....|..++. ..+...++..+++..+. ...++.|+.... +
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~--~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~--~~l~l~p~~l~a~~~~~g~y~~ 93 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDES--ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLS--GSVQISMSTLNARIAIGGLYGD 93 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTT--CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHH--HTTTCCGGGGCCEEECCTTTCC
T ss_pred cCCCHHHHHHHHHHHHHhChh--hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHH--HHhcCChhhhhhhhccCCcccc
Confidence 356677777777777766554 2456665541 01111111222222222 233455655321 1
Q ss_pred -------------HHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC-
Q 046547 140 -------------LLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD- 205 (343)
Q Consensus 140 -------------~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~- 205 (343)
.+...+...+ ++++|.++|+.+...+ |+....-.+-..+.+.+++++|+..|+...... .|.
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g-~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQG-NYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHT-CHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCC-CHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1223344544 6888888888877643 433344445557778888888888887554422 111
Q ss_pred -HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc
Q 046547 206 -LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIG 276 (343)
Q Consensus 206 -~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 276 (343)
...+..+-.++...|++++|+..|++... ....|. .......-.++.+.|+.++|..+|+++... .|+
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~-g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~ 240 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEAND-SPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPE 240 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT-STTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCC
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhc-CCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCc
Confidence 23566777888888888888888888874 233243 234556666777888888888888888874 355
No 165
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.09 E-value=8.6e-05 Score=58.10 Aligned_cols=128 Identities=9% Similarity=-0.101 Sum_probs=67.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCC-CC--------------HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCC
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECV-PD--------------LESYSIVIGAMSTARKTNDAVEMMKEMVLNMG 237 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 237 (343)
.+..+-..+...|++++|...|++..+.... |+ ..+|..+..++...|++++|+..++.... -
T Consensus 40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~ 117 (198)
T 2fbn_A 40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK--I 117 (198)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--h
Confidence 3444455555666666666666655543211 10 24566666666677777777777776664 2
Q ss_pred CCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHH-HHHHHHh
Q 046547 238 LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAG-KTVMGMT 304 (343)
Q Consensus 238 ~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~-~~~~~m~ 304 (343)
.+.+...+..+..+|...|++++|.+.|++..+. .| +...+..+...+...++.+++. ..+..+.
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELCVNKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHC----------
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 2334556666666677777777777777766653 23 3345555555555555555554 3444443
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.08 E-value=8.5e-05 Score=58.14 Aligned_cols=159 Identities=8% Similarity=-0.061 Sum_probs=104.6
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--------------h
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR--------------Q 242 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~--------------~ 242 (343)
.+.+....|+++++.+.|+.-... .......+..+...+...|++++|+..|++......-.|+ .
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEE-KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHH-HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHH-HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 344455566666666666532221 1113456777888899999999999999999852111221 2
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 322 (343)
..|..+..+|.+.|++++|...++...+.. +.+...+..+-.+|...|++++|.+.|++..+.. +-+...+..+...+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 688889999999999999999999988752 2356678888889999999999999999988764 23567778888888
Q ss_pred hccCChhHHH-HHHHHH
Q 046547 323 AGVGEWKLAT-VVRQRF 338 (343)
Q Consensus 323 ~~~g~~~~a~-~~~~~m 338 (343)
...|+.+++. ..+..|
T Consensus 167 ~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 8888777776 444443
No 167
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.08 E-value=6.3e-05 Score=56.02 Aligned_cols=97 Identities=9% Similarity=-0.014 Sum_probs=64.6
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
...+..+...+...|++++|...|++..... +.+...|..+-.++...|++++|+..|+..... -+.+...+..+-.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~ 97 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVM--DIXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCchHHHHHHH
Confidence 3455556666777777777777777766543 235566666777777777777777777777642 2334556667777
Q ss_pred HHHhCccHHHHHHHHHHHHH
Q 046547 251 ALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~ 270 (343)
+|...|++++|...|+...+
T Consensus 98 ~~~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777777665
No 168
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.08 E-value=6.5e-05 Score=54.01 Aligned_cols=94 Identities=12% Similarity=-0.081 Sum_probs=74.0
Q ss_pred HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCc----hhhHHH
Q 046547 210 SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIEFLERKGCPIG----FQGYEV 282 (343)
Q Consensus 210 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----~~~~~~ 282 (343)
..+...+...|++++|...|+..... . +.+. ..+..+..++.+.|++++|...++...+.. |+ ...+..
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~ 81 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLEL-Y-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY--PTHDKAAGGLLK 81 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-C-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTSTTHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHH-C-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC--CCCcccHHHHHH
Confidence 34567788899999999999998863 2 2223 477788888999999999999999988743 33 455677
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 283 VVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+...+...|++++|...|+++.+..
T Consensus 82 la~~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 82 LGLSQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 7788899999999999999988764
No 169
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.07 E-value=5.1e-05 Score=54.36 Aligned_cols=91 Identities=7% Similarity=-0.138 Sum_probs=47.7
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHh
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLE 289 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 289 (343)
.+...+.+.|++++|+..|+...+. -+.+...|..+-.++...|++++|...|++..+. .| +...+..+...|..
T Consensus 22 ~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 22 EEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444555556666666666555531 2224445555555555556666666666555542 22 23344455555555
Q ss_pred cccHhHHHHHHHHHhH
Q 046547 290 CREYILAGKTVMGMTE 305 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~~ 305 (343)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 5556666555555543
No 170
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.05 E-value=8.9e-05 Score=65.53 Aligned_cols=162 Identities=8% Similarity=-0.057 Sum_probs=113.6
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCC----------------HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch-
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPD----------------LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ- 242 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~----------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~- 242 (343)
.+.+.|++++|.+.|....+...... ...+..+...|...|++++|.+.+.......+..++.
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 45566777777777777665432111 1236778999999999999999998876422222222
Q ss_pred ---hHHHHHHHHHHhCccHHHHHHHHHHHHH----cCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC--CC--CC
Q 046547 243 ---GMVIKVAAALRANREMWKAVEMIEFLER----KGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTER--GF--IP 310 (343)
Q Consensus 243 ---~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~--~p 310 (343)
.+.+.+-..+...|+.++|..++..... .+..+. ..++..+...|...|++++|..++++.... +. .|
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 2233333344456899999999988764 233333 447778889999999999999999987643 21 22
Q ss_pred -CHHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 311 -YIKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 311 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
...++..++..|...|++++|..++++....
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 204 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAARTA 204 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3567889999999999999999999887654
No 171
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.04 E-value=0.00013 Score=53.02 Aligned_cols=99 Identities=8% Similarity=-0.099 Sum_probs=83.2
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
.+...+..+...+...|++++|...|++..... +.+...|..+..++...|++++|...++..... .+.+...+..+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l 83 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALEL--DGQSVKAHFFL 83 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CchhHHHHHHH
Confidence 456788888889999999999999999987754 235778888999999999999999999998863 23467788899
Q ss_pred HHHHHhCccHHHHHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~ 270 (343)
..++...|++++|...|+...+
T Consensus 84 ~~~~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 84 GQCQLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999999999999998875
No 172
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.03 E-value=5.9e-05 Score=55.60 Aligned_cols=95 Identities=8% Similarity=-0.069 Sum_probs=59.9
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
.+..+...+.+.|++++|...|++..... +.+...|..+..++...|++++|+..|+..... -+.+...+..+..+|
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALM--DINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence 34445555666777777777777666543 224556666666677777777777777776642 233445566666677
Q ss_pred HhCccHHHHHHHHHHHHH
Q 046547 253 RANREMWKAVEMIEFLER 270 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~ 270 (343)
...|++++|...|+...+
T Consensus 97 ~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 777777777777776654
No 173
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.01 E-value=0.00015 Score=54.77 Aligned_cols=100 Identities=13% Similarity=-0.061 Sum_probs=86.4
Q ss_pred cCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH
Q 046547 169 PDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV 248 (343)
Q Consensus 169 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l 248 (343)
.+...+..+...+.+.|++++|...|++..+.. +-+...|..+..+|...|++++|+..|+...+. -+-+...|..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVV--DPKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 346678888899999999999999999998754 236788999999999999999999999999863 24457889999
Q ss_pred HHHHHhCccHHHHHHHHHHHHHc
Q 046547 249 AAALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
..+|...|++++|...|++..+.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999998874
No 174
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.93 E-value=0.00014 Score=65.37 Aligned_cols=117 Identities=10% Similarity=-0.138 Sum_probs=59.0
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMW 259 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~ 259 (343)
.+.+.|++++|.+.|++..+.. +-+..+|..+..+|.+.|++++|+..+++..+ --+.+...|..+..+|...|+++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHH
Confidence 3445566666666666555432 12345555566666666666666666666553 22234455555666666666666
Q ss_pred HHHHHHHHHHHcCCCCc-hhhHHHHHHH--HHhcccHhHHHHHHH
Q 046547 260 KAVEMIEFLERKGCPIG-FQGYEVVVEG--CLECREYILAGKTVM 301 (343)
Q Consensus 260 ~a~~~~~~m~~~g~~p~-~~~~~~li~~--~~~~g~~~~a~~~~~ 301 (343)
+|.+.+++..+. .|+ ...+..+-.+ +.+.|++++|.+.++
T Consensus 92 eA~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKV--KPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHH--STTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 666666665543 122 2233333333 555566666666655
No 175
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.91 E-value=1.8e-05 Score=56.27 Aligned_cols=105 Identities=10% Similarity=-0.068 Sum_probs=75.7
Q ss_pred cCCChhHHHHHHHHHHhcCC--CCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhH
Q 046547 218 TARKTNDAVEMMKEMVLNMG--LMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~--~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
..|++++|+..|++..+ .+ -+-+...+..+..+|...|++++|...|++..+..- -+...+..+..++...|++++
T Consensus 2 ~~g~~~~A~~~~~~al~-~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~ 79 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIA-SGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQ 79 (117)
T ss_dssp -----CCCHHHHHHHHS-SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHH
T ss_pred CCCcHHHHHHHHHHHHH-cCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHH
Confidence 46889999999999985 23 233567788999999999999999999999987532 246678888889999999999
Q ss_pred HHHHHHHHhHCC-CCCCHHHHHHHHHHHhc
Q 046547 296 AGKTVMGMTERG-FIPYIKVRQKVVEGLAG 324 (343)
Q Consensus 296 a~~~~~~m~~~g-~~p~~~~~~~li~~~~~ 324 (343)
|...+++..... -.|+...|...+..|.+
T Consensus 80 A~~~~~~al~~~p~~~~~~~~~~ai~~~~~ 109 (117)
T 3k9i_A 80 GVELLLKIIAETSDDETIQSYKQAILFYAD 109 (117)
T ss_dssp HHHHHHHHHHHHCCCHHHHHTHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 999999987653 22334445445544443
No 176
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=5.2e-05 Score=68.27 Aligned_cols=121 Identities=8% Similarity=-0.078 Sum_probs=93.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHh
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLE 289 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~ 289 (343)
.+...+.+.|++++|++.|++..+. -+-+...|..+..+|.+.|++++|.+.+++..+. .| +...|..+-..|..
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~lg~~~~~ 86 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAASNMA 86 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHH
Confidence 3444567889999999999999863 3345788999999999999999999999999885 34 46688888899999
Q ss_pred cccHhHHHHHHHHHhHCCCCCCHHHHHHHHHH--HhccCChhHHHHHHH
Q 046547 290 CREYILAGKTVMGMTERGFIPYIKVRQKVVEG--LAGVGEWKLATVVRQ 336 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g~~~~a~~~~~ 336 (343)
.|++++|.+.|++..+..- -+...+..+..+ +.+.|++++|.+.++
T Consensus 87 ~g~~~eA~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 87 LGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HTCHHHHHHHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred cCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999999999999887531 133445555555 888999999999887
No 177
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=97.84 E-value=0.00048 Score=49.29 Aligned_cols=91 Identities=9% Similarity=0.088 Sum_probs=58.8
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCC-H---hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHHH
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPD-L---ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVA 249 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li 249 (343)
+...+...|++++|...|++..+.. |+ . ..+..+..++...|++++|...|+..... . +.+ ...+..+.
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~--p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELY--PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSR-Y-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTSTTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHC--CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-C-CCCcccHHHHHHHH
Confidence 4455666777777777777766543 22 2 35556666777777777777777777642 1 112 44566667
Q ss_pred HHHHhCccHHHHHHHHHHHHHc
Q 046547 250 AALRANREMWKAVEMIEFLERK 271 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~~ 271 (343)
.++...|++++|...|+...+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777777663
No 178
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.82 E-value=0.00014 Score=65.40 Aligned_cols=125 Identities=6% Similarity=-0.068 Sum_probs=75.8
Q ss_pred HhcCCChhHHHHHHHHHHhc--CCC---CC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHc-----C-CCCc-hhhHHH
Q 046547 216 MSTARKTNDAVEMMKEMVLN--MGL---MP-RQGMVIKVAAALRANREMWKAVEMIEFLERK-----G-CPIG-FQGYEV 282 (343)
Q Consensus 216 ~~~~~~~~~a~~~~~~m~~~--~~~---~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~ 282 (343)
+-..|++++|+.++++..+. .-+ .| ...+++.|..+|...|++++|..++++..+- | -.|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44667777777777665531 011 12 2455777777777777777777777765531 1 1232 336677
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHC-----CC-CC-CHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 283 VVEGCLECREYILAGKTVMGMTER-----GF-IP-YIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~-----g~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
|-..|...|++++|+.++++..+- |- .| ...+.+.+-.++...|.+++|+.+|.++.+
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777777777777777765431 21 12 233455666666677777777777777654
No 179
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.81 E-value=0.00041 Score=62.03 Aligned_cols=131 Identities=10% Similarity=-0.089 Sum_probs=97.4
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC--------------HhhHHHHHHHHhcCCChhHHHHHHHHHHhcC
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD--------------LESYSIVIGAMSTARKTNDAVEMMKEMVLNM 236 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~ 236 (343)
...|..+-..|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++..+.
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 346 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 346 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-
Confidence 45677777888888999999999888876421111 477888888999999999999999998852
Q ss_pred CCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC-chhhHHHHHHHHHhcccHhHHHH-HHHHHhH
Q 046547 237 GLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPI-GFQGYEVVVEGCLECREYILAGK-TVMGMTE 305 (343)
Q Consensus 237 ~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~ 305 (343)
-+.+...|..+-.+|...|++++|...|++..+ +.| +...+..+-..+.+.|+.+++.+ ++..|..
T Consensus 347 -~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~--l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~ 414 (457)
T 1kt0_A 347 -DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLE--VNPQNKAARLQISMCQKKAKEHNERDRRIYANMFK 414 (457)
T ss_dssp -STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TC----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred -CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334677888888999999999999999998887 344 34577777788888888887764 4555543
No 180
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.81 E-value=0.0002 Score=53.94 Aligned_cols=101 Identities=5% Similarity=0.001 Sum_probs=79.2
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcC------C----------CCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNM------G----------LMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~------~----------~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
...+...-..+.+.|++++|+..|....... . -+.+...|..+..+|.+.|++++|...++...
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 4567778888999999999999999987510 0 11234678888889999999999999999988
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+.. +.+...|..+-.+|...|++++|...|++.....
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 743 2246678888888999999999999999887753
No 181
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=0.0002 Score=64.36 Aligned_cols=127 Identities=13% Similarity=-0.035 Sum_probs=96.1
Q ss_pred HHHccCcHHHHHHHHHHhhhC---CCCC----CHhhHHHHHHHHhcCCChhHHHHHHHHHHhc-----CCCCCc-hhHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSA---ECVP----DLESYSIVIGAMSTARKTNDAVEMMKEMVLN-----MGLMPR-QGMVI 246 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~---~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~p~-~~~~~ 246 (343)
.+...|++++|..++++..+. -..| ...+++.|..+|...|++++|..++++...- ..-.|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 355789999999999887642 1222 3568999999999999999999988886631 112333 46699
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHH-----cCC-CCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 247 KVAAALRANREMWKAVEMIEFLER-----KGC-PIG-FQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.|...|...|++++|..++++..+ .|- .|+ ..+.+.+-.++...|.+++|+.++..+++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999998663 132 232 335667777888999999999999998764
No 182
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=97.80 E-value=0.00033 Score=50.01 Aligned_cols=91 Identities=12% Similarity=0.016 Sum_probs=44.4
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
+...+.+.|++++|...|++..+.. +-+...|..+-.++...|++++|+..|++..+. -+-+...+..+..++...|
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l--~P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARML--DPKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcC
Confidence 3344455555555555555554432 123444445555555555555555555555431 1123344455555555555
Q ss_pred cHHHHHHHHHHHHH
Q 046547 257 EMWKAVEMIEFLER 270 (343)
Q Consensus 257 ~~~~a~~~~~~m~~ 270 (343)
++++|...+++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
No 183
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=97.77 E-value=6.4e-05 Score=53.30 Aligned_cols=60 Identities=12% Similarity=0.040 Sum_probs=24.4
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
.+..+...|...|++++|...|++..+... -+..++..+..++...|++++|+..+++..
T Consensus 29 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 88 (117)
T 3k9i_A 29 CYLGLGSTFRTLGEYRKAEAVLANGVKQFP-NHQALRVFYAMVLYNLGRYEQGVELLLKII 88 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333344444444444444444444433221 123333344444444444444444444433
No 184
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.75 E-value=0.00026 Score=52.81 Aligned_cols=64 Identities=14% Similarity=-0.031 Sum_probs=40.2
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHHHhHC-----CCCCC-HHHH----HHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 279 GYEVVVEGCLECREYILAGKTVMGMTER-----GFIPY-IKVR----QKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g~~p~-~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
.|..+-.++.+.|++++|+..+++.++. .+.|+ ...| .....++...|++++|++.|++..++.
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~ 132 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI 132 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 5555556666666666666666665553 12343 3455 666677777777777777777776654
No 185
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.70 E-value=0.00065 Score=60.75 Aligned_cols=126 Identities=15% Similarity=-0.046 Sum_probs=100.4
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc-------------hhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-------------QGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
...|..+-..+.+.|++++|+..|++......-.++ ...|..+..+|.+.|++++|...+++..+..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 456778889999999999999999998852111111 5789999999999999999999999998753
Q ss_pred CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 273 CPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 273 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
+.+...|..+-.+|...|++++|...|++..+.. +-+...+..+...+.+.|+.++|.+
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2256688888899999999999999999988753 2256678888888999998888764
No 186
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.70 E-value=0.00023 Score=60.90 Aligned_cols=148 Identities=11% Similarity=-0.046 Sum_probs=61.8
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
...+..+-..+.+.|++++|...|++.... .|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 344555556666677777777777766543 233221 11112222211111 0 125666666
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-HHHHHHHHHH-HhccCCh
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY-IKVRQKVVEG-LAGVGEW 328 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-~~~~~~li~~-~~~~g~~ 328 (343)
+|.+.|++++|...++...+.. +.+...|..+-.+|...|++++|...|++..+. .|+ ...+..+... ....+..
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence 6667777777777777666532 123456666666677777777777777666543 232 2333333333 2234555
Q ss_pred hHHHHHHHHHHhh
Q 046547 329 KLATVVRQRFAEL 341 (343)
Q Consensus 329 ~~a~~~~~~m~~~ 341 (343)
+.+.+.|.+|.+.
T Consensus 316 ~~a~~~~~~~l~~ 328 (338)
T 2if4_A 316 QKQKEMYKGIFKG 328 (338)
T ss_dssp -------------
T ss_pred HHHHHHHHHhhCC
Confidence 6666666665543
No 187
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.69 E-value=0.00051 Score=59.59 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=19.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhh
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~ 199 (343)
.+..+-..+.+.|++++|.+.|++..+
T Consensus 225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~ 251 (370)
T 1ihg_A 225 DLKNIGNTFFKSQNWEMAIKKYTKVLR 251 (370)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 456666777778888888887777664
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=97.67 E-value=0.019 Score=48.92 Aligned_cols=190 Identities=9% Similarity=-0.101 Sum_probs=111.5
Q ss_pred cCC-ChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccC-chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHH-
Q 046547 112 SLH-PLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRC-QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLV- 188 (343)
Q Consensus 112 ~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~-~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~- 188 (343)
..| +++++++.++.+.....+ +..+|+---..+....+ ++++++++++.+.+.. +-+..+|+.-...+.+.|.++
T Consensus 100 ~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~ 177 (349)
T 3q7a_A 100 SLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGR 177 (349)
T ss_dssp HTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTC
T ss_pred HhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccccc
Confidence 345 478888888887764421 33344444333323212 4667777777776543 234455554444444444444
Q ss_pred -------HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC-------hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh
Q 046547 189 -------EAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-------TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA 254 (343)
Q Consensus 189 -------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-------~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~ 254 (343)
++++.++++.+... -|...|+..-..+.+.++ ++++++.+++... --+-|...|+-+-..+.+
T Consensus 178 ~~~~~~~eELe~~~k~I~~dp-~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 178 ISEAQWGSELDWCNEMLRVDG-RNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHH
T ss_pred cchhhHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 77888888877543 366677766666666665 5778888877774 334466667665555555
Q ss_pred CccH--------------------HHHHHHHHHHHHcC-----CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 255 NREM--------------------WKAVEMIEFLERKG-----CPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 255 ~~~~--------------------~~a~~~~~~m~~~g-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
.|.. ....++..++...+ -.++......|...|...|+.++|.++++.+.+.
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~ 331 (349)
T 3q7a_A 255 FSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE 331 (349)
T ss_dssp TTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence 5432 23333333333221 1346667778888899999999999999988654
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=97.66 E-value=0.00067 Score=58.83 Aligned_cols=124 Identities=11% Similarity=0.008 Sum_probs=99.1
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcC-------------CCCC-chhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNM-------------GLMP-RQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-------------~~~p-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
..+..+-..+.+.|++++|+..|++..+-. ...| +..+|..+..+|.+.|++++|.+.+++..+.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~- 302 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI- 302 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-
Confidence 346777888999999999999999887400 0122 4577889999999999999999999999874
Q ss_pred CCC-chhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHH
Q 046547 273 CPI-GFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATV 333 (343)
Q Consensus 273 ~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 333 (343)
.| +...|..+-.+|...|++++|.+.|++..+.. +-+...+..+...+...++.+++.+
T Consensus 303 -~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 -DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 34 46678888889999999999999999988764 2256777778888888888887765
No 190
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=97.59 E-value=0.0017 Score=48.63 Aligned_cols=103 Identities=15% Similarity=0.061 Sum_probs=69.4
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhC-------CC----------CCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSA-------EC----------VPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~----------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
..+...-..+.+.|++++|...|.+.... .- +.+...|..+..+|.+.|++++|+..++....
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34455556666777777777777665543 00 11235677777888888888888888888775
Q ss_pred cCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh
Q 046547 235 NMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ 278 (343)
Q Consensus 235 ~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 278 (343)
- -+.+...|..+-.+|...|++++|...|+...+ +.|+..
T Consensus 92 ~--~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~--l~p~~~ 131 (162)
T 3rkv_A 92 R--EETNEKALFRRAKARIAAWKLDEAEEDLKLLLR--NHPAAA 131 (162)
T ss_dssp H--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCGGGH
T ss_pred c--CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh--cCCCCH
Confidence 2 234566777888888888888888888888776 345543
No 191
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.56 E-value=0.0038 Score=45.52 Aligned_cols=110 Identities=8% Similarity=-0.077 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh----CccHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA----NREMWKA 261 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~----~~~~~~a 261 (343)
++++|.+.|++..+.|. |+.. |-..|...+.+++|.++|+...+. | +...+..|-..|.. .++.++|
T Consensus 10 d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~-g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 10 DLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcC-C---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 44555555555555441 2222 344444444555555555555542 2 33444455555554 4556666
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHh----cccHhHHHHHHHHHhHCC
Q 046547 262 VEMIEFLERKGCPIGFQGYEVVVEGCLE----CREYILAGKTVMGMTERG 307 (343)
Q Consensus 262 ~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~g 307 (343)
.+.|++..+.| +...+..|-..|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666555543 23344444444554 556666666666655555
No 192
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=97.52 E-value=0.0051 Score=55.48 Aligned_cols=186 Identities=10% Similarity=-0.035 Sum_probs=117.0
Q ss_pred hhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc---------CC--
Q 046547 99 KIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI---------GY-- 167 (343)
Q Consensus 99 ~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~---------g~-- 167 (343)
...|-..+. .+...|+++.|..+|++.... |........ |.... +.++. ++.+.+. +.
T Consensus 213 ~~lW~~ya~-~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~---y~~~~-e~~~~---~~~l~~~~~~~~~~~~~~~~ 281 (493)
T 2uy1_A 213 EEVYFFYSE-YLIGIGQKEKAKKVVERGIEM---SDGMFLSLY---YGLVM-DEEAV---YGDLKRKYSMGEAESAEKVF 281 (493)
T ss_dssp HHHHHHHHH-HHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH---HHHHT-TCTHH---HHHHHHHTC----------C
T ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH---HHhhc-chhHH---HHHHHHHHHhhccchhhhhc
Confidence 456666665 566789999999999999886 554433222 22211 11222 2222211 00
Q ss_pred -ccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHH--HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhH
Q 046547 168 -HPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYS--IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM 244 (343)
Q Consensus 168 -~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~ 244 (343)
......|-..+....+.+.++.|.++|+.....+ .+...|. +.+.... .++.+.|..+|+...+..+- +...
T Consensus 282 ~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A~~~~--~~~~v~i~~A~lE~~~-~~d~~~ar~ife~al~~~~~--~~~~ 356 (493)
T 2uy1_A 282 SKELDLLRINHLNYVLKKRGLELFRKLFIELGNEG--VGPHVFIYCAFIEYYA-TGSRATPYNIFSSGLLKHPD--STLL 356 (493)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHTTSC--CCHHHHHHHHHHHHHH-HCCSHHHHHHHHHHHHHCTT--CHHH
T ss_pred ccccHHHHHHHHHHHHHcCCHHHHHHHHHHhhCCC--CChHHHHHHHHHHHHH-CCChHHHHHHHHHHHHHCCC--CHHH
Confidence 1112456666676767788999999999882211 2333343 3333322 23699999999998864322 3344
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+...++...+.|+.+.|..+|+... .....|...+..=...|+.+.+.+++++..+
T Consensus 357 ~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 357 KEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 5667777778899999999999862 2456677777766778999999888887763
No 193
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.50 E-value=0.0039 Score=45.49 Aligned_cols=110 Identities=7% Similarity=-0.121 Sum_probs=89.5
Q ss_pred CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHh----cccHhH
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLE----CREYIL 295 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~ 295 (343)
++.++|+++|++..+. | .|+.. |-..|...+.+++|.+.|++..+.| +...+..|-..|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHH
Confidence 4678999999999874 6 33333 6666777788999999999998875 45677777777877 889999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhc----cCChhHHHHHHHHHHhh
Q 046547 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAG----VGEWKLATVVRQRFAEL 341 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~ 341 (343)
|.++|++..+.| +...+..|-..|.. .++.++|.+.|++..+.
T Consensus 80 A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 126 (138)
T 1klx_A 80 AAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 126 (138)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence 999999999887 56677778888888 89999999999987664
No 194
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.48 E-value=0.00012 Score=50.98 Aligned_cols=62 Identities=16% Similarity=0.004 Sum_probs=29.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
..+..+...+...|++++|+..|++... -.+.+...+..+-.++.+.|++++|.+.+++..+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 66 (111)
T 2l6j_A 5 EKQKEQGNSLFKQGLYREAVHCYDQLIT--AQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLR 66 (111)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 3344444445555555555555555443 1122334444455555555555555555555443
No 195
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.43 E-value=0.043 Score=46.37 Aligned_cols=191 Identities=7% Similarity=-0.086 Sum_probs=128.5
Q ss_pred HhccCchhHHHHHHHHHHhcCCccCH-hhHHHH---HHHHHccC-------cHHHHHHHHHHhhhCCCCCCHhhHHHHHH
Q 046547 146 LERRCQSQSVADILLEMKSIGYHPDC-GTCNYL---VSSLCAID-------QLVEAAKVLKGMSSAECVPDLESYSIVIG 214 (343)
Q Consensus 146 ~~~~~~~~~a~~~~~~m~~~g~~~~~-~~~~~l---l~~~~~~~-------~~~~a~~~~~~m~~~~~~~~~~~~~~ll~ 214 (343)
.+.+.-.++|+++++.+... .|+. .+|+.= +....... .+++++.+++.+.... +-+..+|+.--.
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~--nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~w 116 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCW 116 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34554445889999998874 4433 334432 22222211 2678899999988754 235666666666
Q ss_pred HHhcCC--ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc-HHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc-
Q 046547 215 AMSTAR--KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE-MWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC- 290 (343)
Q Consensus 215 ~~~~~~--~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~- 290 (343)
.+...| .+++++.+++.+.+. -+-+...|+---..+...|. ++++++.++.+.+.... |...|+.....+.+.
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~ 193 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLH 193 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHS
T ss_pred HHhccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhh
Confidence 666666 489999999999963 34466677766666777787 69999999999986543 566676655554443
Q ss_pred -------------ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc-----------CChhHHHHHHHHHHhhcC
Q 046547 291 -------------REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV-----------GEWKLATVVRQRFAELKS 343 (343)
Q Consensus 291 -------------g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~-----------g~~~~a~~~~~~m~~~~~ 343 (343)
+.++++++.+.+..... +-|...|+.+-..+.+. +.++++++.++++.++.|
T Consensus 194 ~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~p 269 (331)
T 3dss_A 194 PQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEP 269 (331)
T ss_dssp CCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCc
Confidence 56889999999988764 23667776554444444 457889999998887653
No 196
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00025 Score=49.23 Aligned_cols=95 Identities=15% Similarity=0.068 Sum_probs=74.9
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCC-------H
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPY-------I 312 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~-------~ 312 (343)
++...+..+-..+...|++++|.+.|++..+.. +.+...+..+-..|.+.|++++|.+.+++..+.. |+ .
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~ 78 (111)
T 2l6j_A 2 SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRS 78 (111)
T ss_dssp THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHH
T ss_pred chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHH
Confidence 356678888899999999999999999988753 2256678888889999999999999999988653 44 5
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHH
Q 046547 313 KVRQKVVEGLAGVGEWKLATVVRQR 337 (343)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~ 337 (343)
..+..+..++...|+.+.|.+.+++
T Consensus 79 ~~~~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 79 KLQYRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHHHHhHhhhHhHHHH
Confidence 5666777777777877777655443
No 197
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.35 E-value=0.00064 Score=58.17 Aligned_cols=116 Identities=9% Similarity=-0.044 Sum_probs=86.7
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVE 285 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~ 285 (343)
...+..+-..+.+.|++++|+..|++.... .|+... +...++.+++..-+. ...|..+-.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~---~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAY---MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHH---SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH---hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence 455777778888899999999999987742 344321 234445554443221 137778888
Q ss_pred HHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhc
Q 046547 286 GCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELK 342 (343)
Q Consensus 286 ~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~ 342 (343)
+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|.+.|++..++.
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~ 294 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA 294 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999988764 3367889999999999999999999999987664
No 198
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.25 E-value=0.0026 Score=44.47 Aligned_cols=98 Identities=7% Similarity=-0.093 Sum_probs=72.0
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
++|+..|++..+ .-+.+...+..+...|...|++++|...+++..+.. +.+...|..+-..|...|++++|...|++
T Consensus 2 ~~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 2 QAITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp CCHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467888888874 334567788999999999999999999999988753 22456788888899999999999999998
Q ss_pred HhHCCC-CCCHHHHHHHHHHHh
Q 046547 303 MTERGF-IPYIKVRQKVVEGLA 323 (343)
Q Consensus 303 m~~~g~-~p~~~~~~~li~~~~ 323 (343)
..+..- .++......+...+.
T Consensus 79 al~~~~~~~~~~~~~~l~~~l~ 100 (115)
T 2kat_A 79 GLAAAQSRGDQQVVKELQVFLR 100 (115)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccccHHHHHHHHHHHH
Confidence 876421 123444444444333
No 199
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=97.24 E-value=0.0047 Score=46.05 Aligned_cols=96 Identities=14% Similarity=-0.013 Sum_probs=47.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHhhhCCCC-C-----C-----HhhHHHHHHHHhcCCChhHHHHHHHHHHhc----CCC
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGMSSAECV-P-----D-----LESYSIVIGAMSTARKTNDAVEMMKEMVLN----MGL 238 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~-----~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~ 238 (343)
+...-..+.+.|++++|...|++..+.... | + ...|+.+-.++.+.|++++|+..++...+- ..+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 344445566667777777777766553211 1 1 114555555555555555555555554420 011
Q ss_pred CCc-hhHH----HHHHHHHHhCccHHHHHHHHHHHH
Q 046547 239 MPR-QGMV----IKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 239 ~p~-~~~~----~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
.|+ ...| ...-.++...|++++|+..|++..
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAl 129 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHH
Confidence 232 2233 444444455555555555555443
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.18 E-value=0.0031 Score=44.06 Aligned_cols=79 Identities=8% Similarity=-0.088 Sum_probs=64.9
Q ss_pred HHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHH
Q 046547 189 EAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFL 268 (343)
Q Consensus 189 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m 268 (343)
+|...|++..+.. +.+...+..+...+...|++++|+..|+..... -+.+...|..+..++...|++++|...|++.
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDF--DPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5677888877654 345778888999999999999999999998863 2345678889999999999999999999988
Q ss_pred HH
Q 046547 269 ER 270 (343)
Q Consensus 269 ~~ 270 (343)
.+
T Consensus 80 l~ 81 (115)
T 2kat_A 80 LA 81 (115)
T ss_dssp HH
T ss_pred HH
Confidence 76
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.13 E-value=0.007 Score=39.81 Aligned_cols=78 Identities=10% Similarity=-0.015 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGL 322 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 322 (343)
..+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~ 87 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 87 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 344455555555555555555555555432 1133344555555556666666666665555432 11334444444443
No 202
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.12 E-value=0.0023 Score=43.64 Aligned_cols=87 Identities=10% Similarity=-0.176 Sum_probs=64.4
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC-CCCCHHHHHHH
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG-FIPYIKVRQKV 318 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g-~~p~~~~~~~l 318 (343)
-+...+..+-.+|...|++++|...|++..+..- .+...|..+-..|...|++++|.+.|++..+.. -.++......+
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l 83 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDP-DYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSEL 83 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHH
Confidence 3567788889999999999999999999887532 245578888889999999999999999876542 12455555555
Q ss_pred HHHHhccCC
Q 046547 319 VEGLAGVGE 327 (343)
Q Consensus 319 i~~~~~~g~ 327 (343)
...+.+.+.
T Consensus 84 ~~~l~~~~~ 92 (100)
T 3ma5_A 84 QDAKLKAEG 92 (100)
T ss_dssp HHHHHHHHT
T ss_pred HHHHHHccc
Confidence 555554443
No 203
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.12 E-value=0.04 Score=50.55 Aligned_cols=36 Identities=6% Similarity=-0.313 Sum_probs=21.2
Q ss_pred ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
+.++++++.+++..... +-|...|..+-..+.+.|+
T Consensus 206 ~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 206 NVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 55677777777666543 2245566665555555555
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.00 E-value=0.039 Score=50.58 Aligned_cols=118 Identities=7% Similarity=-0.105 Sum_probs=77.4
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc-cHhHHHH
Q 046547 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR-EYILAGK 298 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~ 298 (343)
++++++.++.+.+ .-+-+..+|+---..+.+.+ +++++++.++++.+.... |...|+.--..+.+.| .++++++
T Consensus 89 ~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~ 165 (567)
T 1dce_A 89 VKAELGFLESCLR--VNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELA 165 (567)
T ss_dssp HHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHH
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHH
Confidence 6777777777775 23345556666666666667 668888888887775432 5556666666666667 7778888
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHhcc--------------CChhHHHHHHHHHHhhcC
Q 046547 299 TVMGMTERGFIPYIKVRQKVVEGLAGV--------------GEWKLATVVRQRFAELKS 343 (343)
Q Consensus 299 ~~~~m~~~g~~p~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~ 343 (343)
.++++.+... -|...|+.....+.+. +.++++.+.+++..+++|
T Consensus 166 ~~~~~I~~~p-~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 166 FTDSLITRNF-SNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp HHHTTTTTTC-CCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHCC-CCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 8887776542 2566666555555442 567888888888776653
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=96.91 E-value=0.011 Score=38.86 Aligned_cols=61 Identities=10% Similarity=0.001 Sum_probs=29.8
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.+..+...+...|++++|+..|++.... .+.+...+..+..++.+.|++++|...+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444455555555555555554431 122334445555555555555555555555444
No 206
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=96.87 E-value=0.0066 Score=41.29 Aligned_cols=64 Identities=9% Similarity=-0.025 Sum_probs=54.1
Q ss_pred CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 205 DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
+...+..+..+|...|++++|+..|++..+. -+.+...|..+-.+|...|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVET--DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 5677888899999999999999999998863 233566788999999999999999999998765
No 207
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.78 E-value=0.0059 Score=53.91 Aligned_cols=90 Identities=13% Similarity=-0.027 Sum_probs=43.7
Q ss_pred HHHhCccHHHHHHHHHHHHHc--C-CCCc----hhhHHHHHHHHHhcccHhHHHHHHHHHhHC-----C-CCCC-HHHHH
Q 046547 251 ALRANREMWKAVEMIEFLERK--G-CPIG----FQGYEVVVEGCLECREYILAGKTVMGMTER-----G-FIPY-IKVRQ 316 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~--g-~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~ 316 (343)
.+.+.|++++|..++++..+. . +.|+ ..+++.|...|...|++++|+.++++..+- | -.|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 344455555555555555432 1 1111 224555555555556666655555554321 1 1121 33455
Q ss_pred HHHHHHhccCChhHHHHHHHHHHh
Q 046547 317 KVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 317 ~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.|...|...|++++|..++++..+
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Confidence 555556666666666655555443
No 208
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.77 E-value=0.0047 Score=54.57 Aligned_cols=86 Identities=10% Similarity=-0.017 Sum_probs=53.5
Q ss_pred CccHHHHHHHHHHHHHc---CCCC---c-hhhHHHHHHHHHhcccHhHHHHHHHHHhHC-----C-CCCC-HHHHHHHHH
Q 046547 255 NREMWKAVEMIEFLERK---GCPI---G-FQGYEVVVEGCLECREYILAGKTVMGMTER-----G-FIPY-IKVRQKVVE 320 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~---g~~p---~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~li~ 320 (343)
.|++++|..++++..+. -+.| + ..+++.|...|...|++++|+.++++..+- | -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 45677777777765531 1112 2 246677777777777777777777765432 2 1232 445777777
Q ss_pred HHhccCChhHHHHHHHHHHh
Q 046547 321 GLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 321 ~~~~~g~~~~a~~~~~~m~~ 340 (343)
.|...|++++|..++++..+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777777777777776654
No 209
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.71 E-value=0.0077 Score=44.79 Aligned_cols=87 Identities=10% Similarity=-0.108 Sum_probs=46.1
Q ss_pred CccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhccc----------HhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhc
Q 046547 255 NREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECRE----------YILAGKTVMGMTERGFIPYIKVRQKVVEGLAG 324 (343)
Q Consensus 255 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~ 324 (343)
.+.+++|.+.++...+.. +-+...|..+-.++...++ +++|+..|++..+.. +-+...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHH
Confidence 344555555555555422 1133344444444444443 346666666665543 1145556666666665
Q ss_pred c-----------CChhHHHHHHHHHHhhcC
Q 046547 325 V-----------GEWKLATVVRQRFAELKS 343 (343)
Q Consensus 325 ~-----------g~~~~a~~~~~~m~~~~~ 343 (343)
. |++++|++.|++..++++
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 5 367777777777666653
No 210
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.71 E-value=0.0071 Score=53.39 Aligned_cols=88 Identities=5% Similarity=-0.074 Sum_probs=67.6
Q ss_pred cCCChhHHHHHHHHHHhc--CCCCC----chhHHHHHHHHHHhCccHHHHHHHHHHHHHc-----C-CCCc-hhhHHHHH
Q 046547 218 TARKTNDAVEMMKEMVLN--MGLMP----RQGMVIKVAAALRANREMWKAVEMIEFLERK-----G-CPIG-FQGYEVVV 284 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~--~~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----g-~~p~-~~~~~~li 284 (343)
..|++++|+.++++..+. .-+.| ...+++.|..+|...|++++|..++++..+- | -.|+ ..+|+.|-
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 457889999999886642 12222 2477999999999999999999999987642 2 2344 34788999
Q ss_pred HHHHhcccHhHHHHHHHHHhH
Q 046547 285 EGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~ 305 (343)
..|...|++++|+.++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998654
No 211
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.65 E-value=0.037 Score=47.23 Aligned_cols=74 Identities=7% Similarity=-0.152 Sum_probs=53.9
Q ss_pred CCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHH
Q 046547 239 MPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQ 316 (343)
Q Consensus 239 ~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~ 316 (343)
+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|++++|.+.+++.... .|...||.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 4566777777666666788888888888888754 67666666667777888888888888877654 46666653
No 212
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.58 E-value=0.024 Score=41.67 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc---cHHHHHHHHHHHHHcCCCC-c-h-hhHHHHHHHHHhcccHh
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR---EMWKAVEMIEFLERKGCPI-G-F-QGYEVVVEGCLECREYI 294 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p-~-~-~~~~~li~~~~~~g~~~ 294 (343)
....+.+-|.+.... +. ++..+...+..++++.+ +.+++..++++..+.. .| + . ..|+ |--+|.+.|+++
T Consensus 13 ~l~~~~~~y~~e~~~-~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~-LAv~~~kl~~Y~ 88 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFY-LAVGNYRLKEYE 88 (152)
T ss_dssp HHHHHHHHHHHHHHT-TC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHH-HHHHHHHTSCHH
T ss_pred HHHHHHHHHHHHHcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHH-HHHHHHHccCHH
Confidence 345566666666542 33 67777777777888877 6668888888877754 24 1 1 2333 344567888888
Q ss_pred HHHHHHHHHhHC
Q 046547 295 LAGKTVMGMTER 306 (343)
Q Consensus 295 ~a~~~~~~m~~~ 306 (343)
+|.++++.+.+.
T Consensus 89 ~A~~y~~~lL~i 100 (152)
T 1pc2_A 89 KALKYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 888888887764
No 213
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.017 Score=51.05 Aligned_cols=61 Identities=13% Similarity=0.040 Sum_probs=26.4
Q ss_pred hhHHHHHHHHhcCCChhHHHHHHHHHHhc-----CCCCCc-hhHHHHHHHHHHhCccHHHHHHHHHH
Q 046547 207 ESYSIVIGAMSTARKTNDAVEMMKEMVLN-----MGLMPR-QGMVIKVAAALRANREMWKAVEMIEF 267 (343)
Q Consensus 207 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-----~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~ 267 (343)
.+++.+..+|...|++++|+.++++...- ..-.|+ ..+++.|-..|...|++++|..++++
T Consensus 330 ~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 330 KVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 34444555555555555555444443310 011111 23344444445555555555444444
No 214
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.53 E-value=0.12 Score=36.85 Aligned_cols=136 Identities=14% Similarity=0.033 Sum_probs=77.6
Q ss_pred chhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHH
Q 046547 151 QSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMK 230 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 230 (343)
.+++..++..+... ..+..-||.+|--....-+=+-..++++...+. .|. ..+|+......-+-
T Consensus 22 ~v~qGveii~k~~~---ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDi----------s~C~NlKrVi~C~~ 85 (172)
T 1wy6_A 22 YIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDL----------DKCQNLKSVVECGV 85 (172)
T ss_dssp CHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCG----------GGCSCTHHHHHHHH
T ss_pred hHHHHHHHHHHHcC---CCCccccceeeeecchhhchhHHHHHHHHHhhh---cCc----------HhhhcHHHHHHHHH
Confidence 46666666666554 224445555555555555555555555554432 221 12333333333333
Q ss_pred HHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 231 EMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 231 ~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
.+- .+....+.-+..+...|+-|+-.+++.++.. +.+|++...-.+-.+|.+.|+..+|.+++.+..++|++
T Consensus 86 ~~n------~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 86 INN------TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HTT------CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred Hhc------chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 222 1334556666777777777777777777543 34556666666777788888888888888887777764
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.42 E-value=0.05 Score=46.44 Aligned_cols=68 Identities=7% Similarity=-0.219 Sum_probs=59.3
Q ss_pred CCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHhhcC
Q 046547 274 PIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAELKS 343 (343)
Q Consensus 274 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 343 (343)
..+..+|.++...+...|++++|...++++...+ |+...|..+-..+.-.|++++|.+.+++..++.|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 4567788888777777899999999999999886 8888888888999999999999999999888764
No 216
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.41 E-value=0.13 Score=49.17 Aligned_cols=179 Identities=11% Similarity=-0.014 Sum_probs=106.6
Q ss_pred cCCChHHHHH-HHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHH
Q 046547 112 SLHPLPLALA-ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEA 190 (343)
Q Consensus 112 ~~~~~~~a~~-~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a 190 (343)
..+++++|.+ ++.. + |+......++..+ ...+..++|.++.+. |. .-.......|+++.|
T Consensus 611 ~~~~~~~a~~~~l~~-----i-~~~~~~~~~~~~l-~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A 671 (814)
T 3mkq_A 611 LRGEIEEAIENVLPN-----V-EGKDSLTKIARFL-EGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLA 671 (814)
T ss_dssp HTTCHHHHHHHTGGG-----C-CCHHHHHHHHHHH-HHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHH
T ss_pred HhCCHHHHHHHHHhc-----C-CchHHHHHHHHHH-HhCCChHHheecCCC-------cc-----hheehhhhcCCHHHH
Confidence 3478888876 5522 1 1011224555444 444567777765532 11 112345678999999
Q ss_pred HHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 191 AKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 191 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.++.+.+ .+...|..+...+.+.|+++.|.+.|..+.. |..+...+...++.+...++.+....
T Consensus 672 ~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d----------~~~l~~l~~~~~~~~~~~~~~~~a~~ 735 (814)
T 3mkq_A 672 RDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD----------LESLFLLHSSFNNKEGLVTLAKDAET 735 (814)
T ss_dssp HHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC----------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC----------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence 8886544 3577899999999999999999999998762 55666666667777776666665555
Q ss_pred cCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC--------CCCCCH----HHHHHHHHHHhccCChhHH
Q 046547 271 KGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER--------GFIPYI----KVRQKVVEGLAGVGEWKLA 331 (343)
Q Consensus 271 ~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------g~~p~~----~~~~~li~~~~~~g~~~~a 331 (343)
.| -++.-...|.+.|++++|.+++.++... ...|.. ......-..+...|+.+.|
T Consensus 736 ~~------~~~~A~~~~~~~g~~~~a~~~~~~~~~~~~A~~lA~~~~~~~~~i~~~~~~~~~~L~~~~~~~~a 802 (814)
T 3mkq_A 736 TG------KFNLAFNAYWIAGDIQGAKDLLIKSQRFSEAAFLGSTYGLGDNEVNDIVTKWKENLILNGKNTVS 802 (814)
T ss_dssp TT------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTCHHHH
T ss_pred cC------chHHHHHHHHHcCCHHHHHHHHHHcCChHHHHHHHHHhCCChHHHHHHHHHHHHHHHhccchhHH
Confidence 43 2233344455666666666666554321 122333 3444444555566664433
No 217
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=96.36 E-value=0.011 Score=44.03 Aligned_cols=58 Identities=12% Similarity=0.035 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC-----------ccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN-----------REMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~-----------~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
++|+..|++..+- -+-+...|..+-.+|... |++++|.+.|++..+ +.|+...|..-+
T Consensus 63 ~eAi~~le~AL~l--dP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al 131 (158)
T 1zu2_A 63 QEAITKFEEALLI--DPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSL 131 (158)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred HHHHHHHHHHHHh--CcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 4555555555531 111334455555555544 366666666666665 455555444333
No 218
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.34 E-value=0.024 Score=54.24 Aligned_cols=151 Identities=9% Similarity=-0.060 Sum_probs=96.6
Q ss_pred CchhHHHH-HHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHH
Q 046547 150 CQSQSVAD-ILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM 228 (343)
Q Consensus 150 ~~~~~a~~-~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 228 (343)
+++++|.+ ++.. ++ +......++..+.+.|.++.|.++.++ |. .-.......|++++|.++
T Consensus 613 ~~~~~a~~~~l~~-----i~-~~~~~~~~~~~l~~~~~~~~a~~~~~~-------~~-----~~f~~~l~~~~~~~A~~~ 674 (814)
T 3mkq_A 613 GEIEEAIENVLPN-----VE-GKDSLTKIARFLEGQEYYEEALNISPD-------QD-----QKFELALKVGQLTLARDL 674 (814)
T ss_dssp TCHHHHHHHTGGG-----CC-CHHHHHHHHHHHHHTTCHHHHHHHCCC-------HH-----HHHHHHHHHTCHHHHHHH
T ss_pred CCHHHHHHHHHhc-----CC-chHHHHHHHHHHHhCCChHHheecCCC-------cc-----hheehhhhcCCHHHHHHH
Confidence 46777766 4422 11 122337778888889999999876632 11 113345667999999998
Q ss_pred HHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 229 MKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 229 ~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
.+.+ .+...|..+...+.+.++++.|.+.|..+.+ |..+...|...|+.+...++-+.....|-
T Consensus 675 ~~~~-------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~ 738 (814)
T 3mkq_A 675 LTDE-------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGK 738 (814)
T ss_dssp HTTC-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHhh-------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCc
Confidence 6543 3667999999999999999999999998753 33444555556666666665555554441
Q ss_pred CCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 309 IPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
++....+|.+.|++++|.+++.++.+
T Consensus 739 ------~~~A~~~~~~~g~~~~a~~~~~~~~~ 764 (814)
T 3mkq_A 739 ------FNLAFNAYWIAGDIQGAKDLLIKSQR 764 (814)
T ss_dssp ------HHHHHHHHHHHTCHHHHHHHHHHTTC
T ss_pred ------hHHHHHHHHHcCCHHHHHHHHHHcCC
Confidence 23333445555566666555555443
No 219
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.28 E-value=0.017 Score=38.82 Aligned_cols=58 Identities=12% Similarity=0.089 Sum_probs=48.1
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcCCCC-chh-hHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 248 VAAALRANREMWKAVEMIEFLERKGCPI-GFQ-GYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
....+.+.|++++|...+++..+. .| +.. .+..+-..|...|++++|.+.|++..+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 455678899999999999998874 34 445 77788888999999999999999988764
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.24 E-value=0.032 Score=38.21 Aligned_cols=66 Identities=6% Similarity=-0.095 Sum_probs=50.8
Q ss_pred chhHHHHHHHHHHhCccHHHHHHHHHHHHHcC------CCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKG------CPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 241 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g------~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
+..-+-.|-..+.+.++++.|...|+...+.- -.+....+..|..+|.+.|+++.|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556677888889999999999998876531 1234567888888899999999999999888764
No 221
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.05 E-value=0.016 Score=38.86 Aligned_cols=81 Identities=9% Similarity=-0.073 Sum_probs=59.8
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchh-HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHh
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG-MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLE 289 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~ 289 (343)
....+...|++++|+..|++..+. .+.+.. .+..+-.++...|++++|.+.|++..+. .|+.. .+..
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~------- 74 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL--NPDSPALQAR------- 74 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTSTHHHHH-------
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCcHHHHHH-------
Confidence 456778899999999999999863 233556 8888999999999999999999999874 34432 2211
Q ss_pred cccHhHHHHHHHHHh
Q 046547 290 CREYILAGKTVMGMT 304 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~ 304 (343)
+.+.++...|++..
T Consensus 75 -~~~~~a~~~~~~~~ 88 (99)
T 2kc7_A 75 -KMVMDILNFYNKDM 88 (99)
T ss_dssp -HHHHHHHHHHCCTT
T ss_pred -HHHHHHHHHHHHHh
Confidence 55666666665543
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=95.68 E-value=0.075 Score=35.52 Aligned_cols=67 Identities=7% Similarity=-0.091 Sum_probs=51.3
Q ss_pred CCchhHHHHHHHHHHhCcc---HHHHHHHHHHHHHcCCCCc-hhhHHHHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 239 MPRQGMVIKVAAALRANRE---MWKAVEMIEFLERKGCPIG-FQGYEVVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 239 ~p~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
+.|...+..+..++...++ .++|..++++..+. .|+ ......+-..+.+.|++++|...|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~--dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQL--EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4566777788887765554 78999999998873 454 4466666677889999999999999998764
No 223
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.40 E-value=0.38 Score=36.29 Aligned_cols=129 Identities=10% Similarity=0.018 Sum_probs=90.4
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
....+.|+++.|.++-+++ -+...|..|-......|+++-|.+.|..... +..+.-.|.-.|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3456788999998887765 3678899999999999999999999888752 56676777778888
Q ss_pred HHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 259 WKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
+...++-+.....| -++.-...+...|+++++.++|.+. |-.|.... .....|-.+.|.++.+++
T Consensus 77 e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 77776666655544 3455666777889999999998643 43332111 122256677777776654
No 224
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.38 E-value=0.54 Score=35.45 Aligned_cols=125 Identities=10% Similarity=-0.074 Sum_probs=92.0
Q ss_pred hccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHH
Q 046547 147 ERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAV 226 (343)
Q Consensus 147 ~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~ 226 (343)
+.| +++.|.++.+++ -+...|..|-......|+++-|.+.|....+ +..+.-.|...|+.++..
T Consensus 17 ~lg-~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~ 80 (177)
T 3mkq_B 17 EYG-NLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLS 80 (177)
T ss_dssp HTT-CHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHH
T ss_pred hcC-CHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHH
Confidence 444 699999988765 4678999999999999999999999998764 456666777788888877
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHH
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGM 303 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m 303 (343)
++-+....+ | -++.-...+.-.|+++++.++|.+ .|.-|.... .....|..+.|.++.+++
T Consensus 81 kla~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~---~~r~~eA~~------~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 81 KMQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAE---GGSLPLAYA------VAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHH---TTCHHHHHH------HHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHH---CCChHHHHH------HHHHcCcHHHHHHHHHHh
Confidence 776665543 3 366777778889999999999864 333332221 122366678888888766
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.20 E-value=0.2 Score=35.42 Aligned_cols=87 Identities=18% Similarity=0.129 Sum_probs=45.6
Q ss_pred hcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHH---HHHHHHHHHHcCCCC-chhhHH-HHHHHHHhcc
Q 046547 217 STARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWK---AVEMIEFLERKGCPI-GFQGYE-VVVEGCLECR 291 (343)
Q Consensus 217 ~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p-~~~~~~-~li~~~~~~g 291 (343)
........+.+-|...... |. |+..+--.+..++++..+... ++.++++..+.+ .| ...-|. .|--++.+.|
T Consensus 12 ~~~~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg 88 (126)
T 1nzn_A 12 VSVEDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLK 88 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhh
Confidence 3333444455555554432 32 555555556666666654444 666666665542 12 222222 2333566777
Q ss_pred cHhHHHHHHHHHhHC
Q 046547 292 EYILAGKTVMGMTER 306 (343)
Q Consensus 292 ~~~~a~~~~~~m~~~ 306 (343)
++++|.+.++.+.+.
T Consensus 89 ~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 89 EYEKALKYVRGLLQT 103 (126)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHh
Confidence 777777777766654
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=95.00 E-value=0.5 Score=34.69 Aligned_cols=80 Identities=13% Similarity=0.133 Sum_probs=41.9
Q ss_pred HHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC---ChhHHHHHHHHHHhcCCCCC--chhHHHHHHHHHHhCccHHHHH
Q 046547 188 VEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR---KTNDAVEMMKEMVLNMGLMP--RQGMVIKVAAALRANREMWKAV 262 (343)
Q Consensus 188 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a~ 262 (343)
..+.+-|.+..+.|. ++..+-..+-.++++++ +.++++.++++..++ . .| ....+-.|--+|.+.|++++|.
T Consensus 15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~-~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH-S-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344444554444443 45555555555666665 444666666666643 2 22 1223333444456666666666
Q ss_pred HHHHHHHH
Q 046547 263 EMIEFLER 270 (343)
Q Consensus 263 ~~~~~m~~ 270 (343)
+.++.+.+
T Consensus 92 ~y~~~lL~ 99 (152)
T 1pc2_A 92 KYVRGLLQ 99 (152)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66666665
No 227
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=94.96 E-value=0.93 Score=37.24 Aligned_cols=62 Identities=11% Similarity=0.074 Sum_probs=30.5
Q ss_pred hHHHHHHHHHcc-----CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC-CChhHHHHHHHHHHh
Q 046547 173 TCNYLVSSLCAI-----DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA-RKTNDAVEMMKEMVL 234 (343)
Q Consensus 173 ~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~ 234 (343)
.|..+...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.+.+.+.+++...
T Consensus 201 A~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~ 268 (301)
T 3u64_A 201 VWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALA 268 (301)
T ss_dssp HHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Confidence 455555555552 55555555555555432211234444445555543 555555555555554
No 228
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.84 E-value=0.72 Score=33.02 Aligned_cols=138 Identities=14% Similarity=0.059 Sum_probs=101.1
Q ss_pred CCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 113 LHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
.|.+++..+++.+..... +..-||-+|--....- +-+-..++++.. |--.|. ..+|++..+..
T Consensus 20 dG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a-~C~y~v~vLd~I---GkiFDi----------s~C~NlKrVi~ 82 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESI-DCRYMFQVLDKI---GSYFDL----------DKCQNLKSVVE 82 (172)
T ss_dssp TTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHC-CHHHHHHHHHHH---GGGSCG----------GGCSCTHHHHH
T ss_pred hhhHHHHHHHHHHHcCCC---Cccccceeeeecchhh-chhHHHHHHHHH---hhhcCc----------HhhhcHHHHHH
Confidence 589999999999987643 5556777776555543 344455555554 334443 24566666666
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
.+-.+- .+....+..++.+...|+-|+-.+++.++.. ..+|++...-.+..||.+.|+..+|.+++.+.-+.|
T Consensus 83 C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~--n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 83 CGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK--NNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc--cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 665543 2456677888999999999999999999763 667888888899999999999999999999999988
Q ss_pred CC
Q 046547 273 CP 274 (343)
Q Consensus 273 ~~ 274 (343)
++
T Consensus 156 ~k 157 (172)
T 1wy6_A 156 EK 157 (172)
T ss_dssp CH
T ss_pred hH
Confidence 75
No 229
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=94.84 E-value=0.17 Score=34.38 Aligned_cols=62 Identities=10% Similarity=0.007 Sum_probs=30.9
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcC-----CCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNM-----GLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
+-.|-..+...|+++.|..+|+...... .-.+....+..|..++.+.|+++.|...+++..+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 3344455555555555555555544310 0112344455555555666666666666655554
No 230
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=94.18 E-value=0.65 Score=31.16 Aligned_cols=63 Identities=16% Similarity=0.183 Sum_probs=43.2
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+.-++.+-+..+....+.|+..+..+.+++|-+.+++.-|.++|+.++.|.| +...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~--~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CchhhHHHHHH
Confidence 4555666666777777777777777777777777777777777777775433 33455666664
No 231
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=94.07 E-value=0.8 Score=30.36 Aligned_cols=47 Identities=9% Similarity=0.022 Sum_probs=20.8
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.++|..++++... --+-+......+-..+.+.|++++|...|+.+.+
T Consensus 25 ~~~A~~~l~~AL~--~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 25 TDEVSLLLEQALQ--LEPYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHH--HCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3445555544442 1122233344444444455555555555555444
No 232
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=93.89 E-value=1.5 Score=41.29 Aligned_cols=124 Identities=10% Similarity=0.023 Sum_probs=71.9
Q ss_pred HHHHHHHhcCCC-hhHHHHHHHHHHhcCCCCCchhH--HHHHHHHHHhCc-cHHHHHHHHHHHHHc------CCCCchh-
Q 046547 210 SIVIGAMSTARK-TNDAVEMMKEMVLNMGLMPRQGM--VIKVAAALRANR-EMWKAVEMIEFLERK------GCPIGFQ- 278 (343)
Q Consensus 210 ~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~~~~-~~~~a~~~~~~m~~~------g~~p~~~- 278 (343)
..++..+...++ .+.|..+|+++..+ .|...+ ...+|..+.+.+ +--+|.+++.+..+. ...+...
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~---~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~ 328 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKK---DPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD 328 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhh---CCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc
Confidence 445555555666 47788888888764 233222 223333333332 222445555444321 1221111
Q ss_pred -------hHHHH---HHHHHhcccHhHHHHHHHHHhHCCCCC-CHHHHHHHHHHHhccCChhHHHHHHHHH
Q 046547 279 -------GYEVV---VEGCLECREYILAGKTVMGMTERGFIP-YIKVRQKVVEGLAGVGEWKLATVVRQRF 338 (343)
Q Consensus 279 -------~~~~l---i~~~~~~g~~~~a~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m 338 (343)
.+..| .+.+...|+++.|+++-++.... .| +..+|..|..+|...|+++.|.-.++.+
T Consensus 329 ~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 329 SARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred cccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 11111 23366788899999888887754 34 5888999999999999999988777654
No 233
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=92.77 E-value=1.2 Score=31.61 Aligned_cols=64 Identities=14% Similarity=0.126 Sum_probs=49.9
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA 251 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~ 251 (343)
|.-+..+-+..+....+.|+..+..+.+++|-+.+++.-|.++|+-++.| +.+...+|..+++-
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lqE 131 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQE 131 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHHH
Confidence 45566777777777888899999999999999999999999999988864 34446678777753
No 234
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=92.50 E-value=2.3 Score=31.05 Aligned_cols=104 Identities=10% Similarity=-0.023 Sum_probs=60.2
Q ss_pred ChhhHHHHHHHHhhcCCCh------HHHHHHHHHHHhcCCCccHHH----H--HHHHHHHHhccCchhHHHHHHHHHHhc
Q 046547 98 PKIAYDYLLSYTLQSLHPL------PLALAILQRTLRSGCVPVPQI----R--LLLSSAWLERRCQSQSVADILLEMKSI 165 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~------~~a~~~~~~m~~~~~~p~~~~----~--~~li~~~~~~~~~~~~a~~~~~~m~~~ 165 (343)
|..+|-..+. ...+.|+. ++..++|++.... ++|+... | --+--+.....+++++|.++|+.+.+.
T Consensus 12 ~yd~W~~yl~-llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLL-KLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHH-HHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 4556666665 45555777 7777888877653 5565311 1 111111112224677778888777654
Q ss_pred CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 046547 166 GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204 (343)
Q Consensus 166 g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 204 (343)
+-+- ...|-..-..=.+.|++.+|.+++......+..|
T Consensus 90 hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 90 CKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp CTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred hHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 3222 4444444444556778888888887777766554
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=92.37 E-value=0.35 Score=39.71 Aligned_cols=86 Identities=14% Similarity=0.059 Sum_probs=40.8
Q ss_pred hHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhc-----CCChHHHHHHHHHHHhcCCCc--cHHHHHHHHHHHHhccCch
Q 046547 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS-----LHPLPLALAILQRTLRSGCVP--VPQIRLLLSSAWLERRCQS 152 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~-----~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~~~~~ 152 (343)
..+..+++...++.|.-.+...|..+-. +|.. -|+.++|.+.|++..+.+ | +..++...-..+|...++.
T Consensus 180 ~~A~a~lerAleLDP~~~~GsA~~~LG~-lY~~vPp~~gGd~ekA~~~ferAL~Ln--P~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACDLWPSYQEGAVWNVLTK-FYAAAPESFGGGMEKAHTAFEHLTRYC--SAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHH-HHHHSCTTTTCCHHHHHHHHHHHHHHC--CTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHhCCCcccCHHHHHHHH-HHHhCCCccCCCHHHHHHHHHHHHHhC--CCCCchHHHHHHHHHHHhcCCH
Confidence 3344444444444332222344544443 4444 256666666666665532 3 2344444444444433345
Q ss_pred hHHHHHHHHHHhcCCc
Q 046547 153 QSVADILLEMKSIGYH 168 (343)
Q Consensus 153 ~~a~~~~~~m~~~g~~ 168 (343)
+++.+.+++.......
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 5566666666554433
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=91.97 E-value=2.7 Score=30.69 Aligned_cols=53 Identities=11% Similarity=-0.053 Sum_probs=24.4
Q ss_pred ccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCC
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFI 309 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~ 309 (343)
+++++|.++|+.+++.+-+- ...|....+.=.+.|+...|.+++......+..
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k 126 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV 126 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence 45555555555554431111 223333333344555555555555555554433
No 237
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.85 E-value=0.72 Score=39.92 Aligned_cols=67 Identities=9% Similarity=0.027 Sum_probs=40.2
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH-----cCCCCchhh
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-----KGCPIGFQG 279 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~ 279 (343)
.++.++...|++++|+..+..+.. ..+-+...|..+|.++.+.|+..+|++.|+...+ .|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~--~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTF--EHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 344555566666666666666653 3344556666666666666666666666665442 366665544
No 238
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=91.65 E-value=2.3 Score=30.02 Aligned_cols=81 Identities=16% Similarity=0.173 Sum_probs=38.7
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhH---HHHHHHHHHhcCCCCC--chhHHHHHHHHHHhCccHHHH
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTND---AVEMMKEMVLNMGLMP--RQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~---a~~~~~~m~~~~~~~p--~~~~~~~li~~~~~~~~~~~a 261 (343)
+..+.+-|.+....|. |+..+--.+..+++++.+... ++.+++++... + .| .....-.|.-++.+.|++++|
T Consensus 17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~-~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK-G-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT-S-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-C-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 3334444444433332 444444445555555555444 56666665532 2 12 112222334455566666666
Q ss_pred HHHHHHHHH
Q 046547 262 VEMIEFLER 270 (343)
Q Consensus 262 ~~~~~~m~~ 270 (343)
.+.++.+.+
T Consensus 94 ~~~~~~lL~ 102 (126)
T 1nzn_A 94 LKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 666666655
No 239
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.11 E-value=2.7 Score=39.68 Aligned_cols=129 Identities=15% Similarity=0.088 Sum_probs=80.1
Q ss_pred hhHHHHHHHHhhcCCC-hHHHHHHHHHHHhcCCCccHHHH--HHHHHHHHhccCchhHHHHHHHHHHhc------CCcc-
Q 046547 100 IAYDYLLSYTLQSLHP-LPLALAILQRTLRSGCVPVPQIR--LLLSSAWLERRCQSQSVADILLEMKSI------GYHP- 169 (343)
Q Consensus 100 ~~~~~li~~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~--~~li~~~~~~~~~~~~a~~~~~~m~~~------g~~~- 169 (343)
.....++. ++...++ .+.|..+|+++.+.. |...++ ..++..+...+..--+|.+++.+..+. ...+
T Consensus 249 ~L~~~Ll~-~~~~t~~~~~~a~~~le~L~~~~--p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~ 325 (754)
T 4gns_B 249 YLMYSLKS-FIAITPSLVDFTIDYLKGLTKKD--PIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPR 325 (754)
T ss_dssp HHHHHHHH-HHHTCGGGHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSC
T ss_pred HHHHHHHH-HHcccccHHHHHHHHHHHHHhhC--CchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccc
Confidence 34456665 5665666 588999999998865 543332 233332222221122455555444321 1111
Q ss_pred CH----------hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC-HhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 170 DC----------GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD-LESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 170 ~~----------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
+. ...+.-...+...|+++.|+++-++.... .|+ -.+|..|..+|...|+++.|+-.++.+.
T Consensus 326 ~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 326 DADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 11 11222234566789999999999988764 455 6789999999999999999999988873
No 240
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=90.54 E-value=1.4 Score=38.12 Aligned_cols=127 Identities=14% Similarity=-0.005 Sum_probs=84.4
Q ss_pred CHhhHHHHHHHHH---ccCcHHHHHHHHHHhhhC--CC-CCCHhhHHHHHHHHhcCCChh-HHHHHHHHHHhcCCCCCch
Q 046547 170 DCGTCNYLVSSLC---AIDQLVEAAKVLKGMSSA--EC-VPDLESYSIVIGAMSTARKTN-DAVEMMKEMVLNMGLMPRQ 242 (343)
Q Consensus 170 ~~~~~~~ll~~~~---~~~~~~~a~~~~~~m~~~--~~-~~~~~~~~~ll~~~~~~~~~~-~a~~~~~~m~~~~~~~p~~ 242 (343)
|...|..++.... ..|+.+.|...+++.... |- -++.. ...|- ....-+++...
T Consensus 111 D~~~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~-----------~~~w~~~~r~~l~~~~~-------- 171 (388)
T 2ff4_A 111 DLGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLR-----------DFQFVEPFATALVEDKV-------- 171 (388)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGT-----------TSTTHHHHHHHHHHHHH--------
T ss_pred hHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCC-----------chhHHHHHHHHHHHHHH--------
Confidence 4445555554332 357888888888877653 31 11111 11221 11223333332
Q ss_pred hHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhH-----CCCCCCHHHHH
Q 046547 243 GMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTE-----RGFIPYIKVRQ 316 (343)
Q Consensus 243 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~g~~p~~~~~~ 316 (343)
.+...++.++...|+.++|...+..+... -+.+...|..+|.++.+.|+..+|++.|++... -|+.|...+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 24556788889999999999999988763 234677999999999999999999999998654 39999887643
No 241
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=89.80 E-value=3.2 Score=27.84 Aligned_cols=61 Identities=20% Similarity=0.213 Sum_probs=33.3
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
.-+..+-++.+.. ..+.|++.+..+.+++|-+-+++..|.++++-.+.+ +.+...+|..++
T Consensus 26 ~~e~rrglN~l~~-~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHH
Confidence 3345555555554 456666666666666666666666666666655543 122233455544
No 242
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.65 E-value=8.2 Score=33.97 Aligned_cols=48 Identities=17% Similarity=0.140 Sum_probs=24.8
Q ss_pred chhHHHHHHHHHHhc-----CCccCHhhHHHHHHHHHccCcHHHHHHHHHHhh
Q 046547 151 QSQSVADILLEMKSI-----GYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMS 198 (343)
Q Consensus 151 ~~~~a~~~~~~m~~~-----g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 198 (343)
+++.|.+.+-.+.+. +...+......++..|...|+++...+.+.-+.
T Consensus 31 ~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Ls 83 (445)
T 4b4t_P 31 DCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLS 83 (445)
T ss_dssp HHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 355565555444321 122234445556666666666666655555443
No 243
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=88.21 E-value=5.2 Score=28.46 Aligned_cols=60 Identities=20% Similarity=0.213 Sum_probs=32.6
Q ss_pred hHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHH
Q 046547 223 NDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVV 284 (343)
Q Consensus 223 ~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li 284 (343)
-+..+-++.+.. ..+.|++.+..+.+++|-+-+++..|.++|+-.+.+ +.+...+|..++
T Consensus 70 wElrrglN~l~~-~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l 129 (152)
T 2y69_E 70 WELRKGMNTLVG-YDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHHTT-SSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred HHHHHHHHHHhc-cccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence 344445555554 456666666666666666666666666666655543 222333455544
No 244
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.21 E-value=20 Score=34.83 Aligned_cols=232 Identities=11% Similarity=-0.004 Sum_probs=116.3
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCC-------CccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGC-------VPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~-------~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
-.+++.......|..+++..++.......- .+....-.++--+++..|..-+++.+.+..+....- +.....
T Consensus 413 ~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd~-~~~~~~ 491 (963)
T 4ady_A 413 GGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYNDS-ATSGEA 491 (963)
T ss_dssp HHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTCC-HHHHHH
T ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcCC-HHHHHH
Confidence 444443334455555667777776554321 011111222222333333333566666666654321 111112
Q ss_pred H--HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHH--HH
Q 046547 175 N--YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKV--AA 250 (343)
Q Consensus 175 ~--~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~l--i~ 250 (343)
. .|-..+...|+.+....++..+.+.. .-+..-+.++--++...|+.+.+..+.+.+.. ...|...--.++ .-
T Consensus 492 AalALGli~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~--~~dp~vRygaa~algl 568 (963)
T 4ady_A 492 AALGMGLCMLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLA--SDESLLRYGGAFTIAL 568 (963)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHH--CSCHHHHHHHHHHHHH
T ss_pred HHHHHhhhhcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHh--CCCHHHHHHHHHHHHH
Confidence 2 22233456677777777777666532 11222233333444577888888888888875 223333322223 33
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh-h
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW-K 329 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~-~ 329 (343)
+|+..|+.....++++.+.+.. ..+......+--++...|+.+.+.++++.+.+.+ .|...--..+.-+....|.. .
T Consensus 569 AyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~ 646 (963)
T 4ady_A 569 AYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQ 646 (963)
T ss_dssp HTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCH
T ss_pred HhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcH
Confidence 5667778877777888877642 2233333333334555666666666666555543 34444434444444444443 4
Q ss_pred HHHHHHHHHH
Q 046547 330 LATVVRQRFA 339 (343)
Q Consensus 330 ~a~~~~~~m~ 339 (343)
+|...+..+.
T Consensus 647 ~aid~L~~L~ 656 (963)
T 4ady_A 647 SAIDVLDPLT 656 (963)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 5555555543
No 245
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=87.93 E-value=4.2 Score=32.65 Aligned_cols=212 Identities=13% Similarity=0.017 Sum_probs=99.9
Q ss_pred HHHHHHhCccCcchHHHHHHHchhcCCCCC--hHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcC
Q 046547 36 ETVRAAVDAKDYQQIPELLGSFEEACQNPN--PFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSL 113 (343)
Q Consensus 36 ~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~ 113 (343)
..+...++.|+.+.+..+++.-.......+ -.+-+...+..+..+.++.+++.... ...+|....+.+.. .+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~g~~--~~~~~~~g~t~L~~--A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGAD--PVLRKKNGATPFLL--AAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCC--TTCCCTTCCCHHHH--HHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHHHHHHHHHcCCC--CcccCCCCCCHHHH--HHHc
Confidence 345556667777666655554221111111 12446666677888888777776432 22233333444442 3334
Q ss_pred CChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh------------HHHHH
Q 046547 114 HPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT------------CNYLV 178 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~------------~~~ll 178 (343)
|+.+ +++.+.+.|..++. ..++.+..+ +..+ ..+ +++.+.+.|..++... -...+
T Consensus 83 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~-~~~----~~~~Ll~~g~~~~~~~~~~~~~~~~~~~g~t~L 152 (285)
T 1wdy_A 83 GSVK----LLKLFLSKGADVNECDFYGFTAFMEA-AVYG-KVK----ALKFLYKRGANVNLRRKTKEDQERLRKGGATAL 152 (285)
T ss_dssp TCHH----HHHHHHHTTCCTTCBCTTCCBHHHHH-HHTT-CHH----HHHHHHHTTCCTTCCCCCCHHHHHTTCCCCCHH
T ss_pred CCHH----HHHHHHHcCCCCCccCcccCCHHHHH-HHhC-CHH----HHHHHHHhCCCcccccccHHHHHhhccCCCcHH
Confidence 6654 34444455655432 233444433 4443 343 4445555665554321 11233
Q ss_pred HHHHccCcHHHHHHHHHHhhhCCCCCC---HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhH--HHHHHHHHH
Q 046547 179 SSLCAIDQLVEAAKVLKGMSSAECVPD---LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM--VIKVAAALR 253 (343)
Q Consensus 179 ~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~--~~~li~~~~ 253 (343)
...+..|+.+-+..+++.. |..++ ....+.+..+ +..++.....++++.+.+ .|..++... -.+.+...+
T Consensus 153 ~~A~~~~~~~~v~~Ll~~~---~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~-~g~~~~~~~~~g~t~L~~A~ 227 (285)
T 1wdy_A 153 MDAAEKGHVEVLKILLDEM---GADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLD-HGADVNVRGERGKTPLILAV 227 (285)
T ss_dssp HHHHHHTCHHHHHHHHHTS---CCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHH-TTCCSSCCCTTSCCHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhc---CCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHH-cCCCCCCcCCCCCcHHHHHH
Confidence 4445566665544444321 33332 2223333333 344555555666666665 366654321 112333445
Q ss_pred hCccHHHHHHHHH
Q 046547 254 ANREMWKAVEMIE 266 (343)
Q Consensus 254 ~~~~~~~a~~~~~ 266 (343)
+.|+.+-+..+++
T Consensus 228 ~~~~~~~v~~Ll~ 240 (285)
T 1wdy_A 228 EKKHLGLVQRLLE 240 (285)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHh
Confidence 5666655444443
No 246
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=87.84 E-value=8.9 Score=38.37 Aligned_cols=148 Identities=12% Similarity=0.064 Sum_probs=94.5
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc--------------
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-------------- 241 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-------------- 241 (343)
.++..+.+.+..+.+.++..-.. -+...--.+..++...|++++|.+.|.+... |+..+
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~-----~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~--~~~~~~~l~~~~~~~~~~~ 889 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN-----SDPIAVYLKALIYLKSKEAVKAVRCFKTTSL--VLYSHTSQFAVLREFQEIA 889 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC-----CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC--SCTTCCCSCSSHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc-----CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh--hhcccchhhhhhccccccc
Confidence 34445555666665555443322 2232223455677888999999999877542 33221
Q ss_pred ---------hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCC-C-Cc--hhhHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 242 ---------QGMVIKVAAALRANREMWKAVEMIEFLERKGC-P-IG--FQGYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 242 ---------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~-p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
..=|.-++..+-+.+.++.+.++-....+..- . ++ ...|..++.++...|++++|...+-.+.+...
T Consensus 890 ~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 890 EKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp HTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred ccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 12356677777888888888887776665321 1 11 12577888999999999999988887776654
Q ss_pred CCCHHHHHHHHHHHhccCChhHHH
Q 046547 309 IPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 309 ~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
+ ......|+..+|..|..+.-.
T Consensus 970 r--~~cLr~LV~~lce~~~~~~L~ 991 (1139)
T 4fhn_B 970 K--KSCLLDFVNQLTKQGKINQLL 991 (1139)
T ss_dssp C--HHHHHHHHHHHHHHCCHHHHH
T ss_pred H--HHHHHHHHHHHHhCCChhhhh
Confidence 4 456777888888777766543
No 247
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=86.44 E-value=27 Score=34.95 Aligned_cols=169 Identities=8% Similarity=-0.116 Sum_probs=106.1
Q ss_pred CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-----------------------CHhhHHHHHHHHhcCCChhHHH
Q 046547 170 DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP-----------------------DLESYSIVIGAMSTARKTNDAV 226 (343)
Q Consensus 170 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-----------------------~~~~~~~ll~~~~~~~~~~~a~ 226 (343)
++...-.+-.+|...|++++|.+.|.+... |+.. -..-|.-++..+-+.|.++.+.
T Consensus 841 ~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi 919 (1139)
T 4fhn_B 841 DPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDAL 919 (1139)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHH
T ss_pred CcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHH
Confidence 333334455678889999999999987531 1111 1134677888888999999998
Q ss_pred HHHHHHHhcCCCCC-c--hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHh---------
Q 046547 227 EMMKEMVLNMGLMP-R--QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYI--------- 294 (343)
Q Consensus 227 ~~~~~m~~~~~~~p-~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~--------- 294 (343)
++-....+..+-.+ + ...|..+.+++...|++++|...+-.+-+...+ ......|+...+..|..+
T Consensus 920 ~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~~lce~~~~~~L~~lpf~g 997 (1139)
T 4fhn_B 920 EFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVNQLTKQGKINQLLNYSMPT 997 (1139)
T ss_dssp HHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHHHHHHHCCHHHHHHHTTTS
T ss_pred HHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHHHHHhCCChhhhhCCCCcc
Confidence 88777665322222 1 226889999999999999999988877665443 345566666666655543
Q ss_pred ---HHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCChhHHHH-HHHHHHhh
Q 046547 295 ---LAGKTVMGMTER--GFIPYIKVRQKVVEGLAGVGEWKLATV-VRQRFAEL 341 (343)
Q Consensus 295 ---~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~~ 341 (343)
+..+++..-... .....+.-|..|-.-+...|++..|-+ +|+...++
T Consensus 998 l~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL 1050 (1139)
T 4fhn_B 998 LRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRY 1050 (1139)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHh
Confidence 344444332211 111112335666666667777776554 56766665
No 248
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=85.94 E-value=3.7 Score=31.98 Aligned_cols=20 Identities=15% Similarity=0.047 Sum_probs=11.2
Q ss_pred hhhhhhcccchHHHHHHHHh
Q 046547 70 LSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ 89 (343)
+...+..|..+.++.+++..
T Consensus 13 l~~A~~~g~~~~~~~Ll~~g 32 (240)
T 3eu9_A 13 IVKATQYGIYERCRELVEAG 32 (240)
T ss_dssp HHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHcC
Confidence 34445556666666666654
No 249
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=85.70 E-value=7.7 Score=27.54 Aligned_cols=67 Identities=15% Similarity=0.119 Sum_probs=42.2
Q ss_pred CCCchhHHHHHHHHHHhCc---cHHHHHHHHHHHHHcCCCC-chh-hHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 238 LMPRQGMVIKVAAALRANR---EMWKAVEMIEFLERKGCPI-GFQ-GYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 238 ~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p-~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
-.|+..+--.+..++++.. +..+++.++++..+.+ | ... ..=.|--++.+.|++++|.+..+.+.+.
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~--~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA--ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--cchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3455555555666666665 4456777887777654 3 222 2223455677888888888888877754
No 250
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=85.35 E-value=3.1 Score=33.47 Aligned_cols=242 Identities=12% Similarity=0.036 Sum_probs=122.1
Q ss_pred HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccH---HHHHHHHHH
Q 046547 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP---QIRLLLSSA 144 (343)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~ 144 (343)
+.+...+..|..+.++.+++....... ..+...++.|. ..+..|+.+- ++.+.+.|..|+. ...+.+..+
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~-~~~~~g~t~L~--~A~~~g~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A 79 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNF-QEEEGGWTPLH--NAVQMSREDI----VELLLRHGADPVLRKKNGATPFLLA 79 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTC-CCTTTCCCHHH--HHHHTTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCccc-ccCCCCCcHHH--HHHHcCCHHH----HHHHHHcCCCCcccCCCCCCHHHHH
Confidence 334555677888888888877543221 11222334444 3445577554 4444455655443 233444433
Q ss_pred HHhccCchhHHHHHHHHHHhcCCccCHh---hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh-------------h
Q 046547 145 WLERRCQSQSVADILLEMKSIGYHPDCG---TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE-------------S 208 (343)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-------------~ 208 (343)
+..+ ..+ +++.+.+.|..++.. .++.+ ...+..|+.+- ++.+.+.|..++.. -
T Consensus 80 -~~~~-~~~----~v~~Ll~~g~~~~~~~~~g~t~L-~~A~~~~~~~~----~~~Ll~~g~~~~~~~~~~~~~~~~~~~g 148 (285)
T 1wdy_A 80 -AIAG-SVK----LLKLFLSKGADVNECDFYGFTAF-MEAAVYGKVKA----LKFLYKRGANVNLRRKTKEDQERLRKGG 148 (285)
T ss_dssp -HHHT-CHH----HHHHHHHTTCCTTCBCTTCCBHH-HHHHHTTCHHH----HHHHHHTTCCTTCCCCCCHHHHHTTCCC
T ss_pred -HHcC-CHH----HHHHHHHcCCCCCccCcccCCHH-HHHHHhCCHHH----HHHHHHhCCCcccccccHHHHHhhccCC
Confidence 3443 443 455555667666532 23333 44456666553 44455566555432 1
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh--HHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG--YEVV 283 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l 283 (343)
. +.+...+..|+.+-+..+++. .|..++ ....+.+..+ +..+......++++.+.+.|..++... -.+.
T Consensus 149 ~-t~L~~A~~~~~~~~v~~Ll~~----~~~~~~~~~~~g~t~l~~a-~~~~~~~~~~~i~~~Ll~~g~~~~~~~~~g~t~ 222 (285)
T 1wdy_A 149 A-TALMDAAEKGHVEVLKILLDE----MGADVNACDNMGRNALIHA-LLSSDDSDVEAITHLLLDHGADVNVRGERGKTP 222 (285)
T ss_dssp C-CHHHHHHHHTCHHHHHHHHHT----SCCCTTCCCTTSCCHHHHH-HHCSCTTTHHHHHHHHHHTTCCSSCCCTTSCCH
T ss_pred C-cHHHHHHHcCCHHHHHHHHHh----cCCCCCccCCCCCCHHHHH-HHccccchHHHHHHHHHHcCCCCCCcCCCCCcH
Confidence 2 234444555665544444332 244443 3334445444 445555555677777778887765432 1233
Q ss_pred HHHHHhcccHhHHHHHHHHHhHCCCCCCHHH--HHHHHHHHhccCChhHHHHHHH
Q 046547 284 VEGCLECREYILAGKTVMGMTERGFIPYIKV--RQKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 336 (343)
+...++.|+.+-+..+++. .|..++... -.+.+...++.|+.+-+..+++
T Consensus 223 L~~A~~~~~~~~v~~Ll~~---~g~~~~~~~~~g~t~l~~A~~~~~~~i~~~Ll~ 274 (285)
T 1wdy_A 223 LILAVEKKHLGLVQRLLEQ---EHIEINDTDSDGKTALLLAVELKLKKIAELLCK 274 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHS---SSCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHhc---cCCCccccCCCCCcHHHHHHHcCcHHHHHHHHH
Confidence 4455566776655444431 455443221 1233445566677766655554
No 251
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=82.76 E-value=11 Score=27.09 Aligned_cols=69 Identities=14% Similarity=0.115 Sum_probs=46.2
Q ss_pred CCCchhHHHHHHHHHHhCc---cHHHHHHHHHHHHHcCCCCchhhHH-HHHHHHHhcccHhHHHHHHHHHhHCC
Q 046547 238 LMPRQGMVIKVAAALRANR---EMWKAVEMIEFLERKGCPIGFQGYE-VVVEGCLECREYILAGKTVMGMTERG 307 (343)
Q Consensus 238 ~~p~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~g~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~g 307 (343)
-.|+..+--.+..++++.. +..++..++++....+-. +..-|- .|--++.+.|++++|.++.+.+.+..
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~-~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCS-THHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcc-chhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3567777667777777776 445778888887764321 233222 34456888999999999888888753
No 252
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=82.50 E-value=7.3 Score=28.86 Aligned_cols=70 Identities=14% Similarity=0.071 Sum_probs=40.5
Q ss_pred CCCCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch-------hHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 200 AECVPDL--ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ-------GMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 200 ~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
.|..|.. .++-.-+..+...|.++.|+-+.+.+..-.+..|+. .++..+.+++...+++.+|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL 90 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL 90 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 4555543 334445667777788888877777655422233432 345666777778888888888888754
No 253
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=80.98 E-value=23 Score=29.42 Aligned_cols=163 Identities=8% Similarity=-0.093 Sum_probs=97.3
Q ss_pred hhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHH--
Q 046547 152 SQSVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEM-- 228 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~-- 228 (343)
+++.+.-++.-.+.|---. ...|.++..-|.+.+++++|.+++..- ...+.+.|+...|-++
T Consensus 13 ~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~g---------------a~~ll~~~Q~~sa~DLa~ 77 (312)
T 2wpv_A 13 LAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQG---------------ALSFLKAKQGGSGTDLIF 77 (312)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHHHHH
Confidence 4444444444444441111 346777777777777777777665532 2345566887766554
Q ss_pred --HHHHHhcCCCCCchhHHHHHHHHHHhCccHH-HHHHHHHHHHH----cCC--CCchhhHHHHHHHHHhcccHhHHHHH
Q 046547 229 --MKEMVLNMGLMPRQGMVIKVAAALRANREMW-KAVEMIEFLER----KGC--PIGFQGYEVVVEGCLECREYILAGKT 299 (343)
Q Consensus 229 --~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~----~g~--~p~~~~~~~li~~~~~~g~~~~a~~~ 299 (343)
.+...+ .+++++......++..+.....-+ .=.++++.+.+ .|- .-+......+-..|.+.|++.+|...
T Consensus 78 llvev~~~-~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H 156 (312)
T 2wpv_A 78 YLLEVYDL-AEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERY 156 (312)
T ss_dssp HHHHHHHH-TTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHH-cCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Confidence 555554 689999988888888876633111 22445555543 222 22556677778889999999999887
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhcc---CChhHHHHH
Q 046547 300 VMGMTERGFIPYIKVRQKVVEGLAGV---GEWKLATVV 334 (343)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~a~~~ 334 (343)
|- .|-.-|...+..++.-+... |...++--+
T Consensus 157 ~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e~dlf 190 (312)
T 2wpv_A 157 FM----LGTHDSMIKYVDLLWDWLCQVDDIEDSTVAEF 190 (312)
T ss_dssp HH----TSCHHHHHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HH----hCCCccHHHHHHHHHHHHHhcCCCCcchHHHH
Confidence 75 12111355666666555555 666665443
No 254
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=80.98 E-value=24 Score=29.62 Aligned_cols=159 Identities=12% Similarity=0.014 Sum_probs=98.4
Q ss_pred hhHHHHHHHHHHhcCCc---c-CHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHH
Q 046547 152 SQSVADILLEMKSIGYH---P-DCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVE 227 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~---~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 227 (343)
.++.+.=++.-.+.|-- - -..+|.++..-|.+.+++++|.+++..- ...+.+.|+...|-+
T Consensus 12 ~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~G---------------A~~ll~~~Q~~sg~D 76 (336)
T 3lpz_A 12 IERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASV---------------SQTLLRSGQGGSGGD 76 (336)
T ss_dssp HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHH---------------HHHHHHCCCcchHHH
Confidence 34444444444454421 1 1256778888888888888888775432 234556688766655
Q ss_pred H----HHHHHhcCCCCCchhHHHHHHHHHHhCcc--HHHHHHHHHHHHHc----C--CCCchhhHHHHHHHHHhcccHhH
Q 046547 228 M----MKEMVLNMGLMPRQGMVIKVAAALRANRE--MWKAVEMIEFLERK----G--CPIGFQGYEVVVEGCLECREYIL 295 (343)
Q Consensus 228 ~----~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~----g--~~p~~~~~~~li~~~~~~g~~~~ 295 (343)
+ ++-..+ .++++|......++..+..... .+. ..+.+++.+. | -.-|......+-..|.+.+++.+
T Consensus 77 L~~llvevy~~-~~~~~~~~~~~rL~~L~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 77 LAVLLVDTFRQ-AGQRVDGASRGKLLGCLRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHH-HTCCCCHHHHHHHHHHHTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 4 455555 5999999988888888876653 222 4455555532 3 22345566677788999999999
Q ss_pred HHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHH
Q 046547 296 AGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLA 331 (343)
Q Consensus 296 a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a 331 (343)
|...|- . |-.+....|..++..+...+...++
T Consensus 155 Ae~H~i--l--g~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 155 AEKHLV--L--GTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp HHHHHT--T--SCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred HHHHHH--h--cCCchHHHHHHHHHHHHHhcCCccH
Confidence 998873 2 4344446775555555554444443
No 255
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=79.92 E-value=22 Score=31.00 Aligned_cols=61 Identities=11% Similarity=-0.061 Sum_probs=31.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCC--CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAE--CVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
+...+...|.+.|++++|.+.|.++.... ..--...+-.++..+...+++..+...+.+..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 44555555566666666666666555422 11123344455555555556665555555543
No 256
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=78.57 E-value=34 Score=30.01 Aligned_cols=187 Identities=11% Similarity=0.118 Sum_probs=112.2
Q ss_pred CChHHHHHHHHHHHhc-----CCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHh-cCCccCHhhHHHHHHHH----Hc
Q 046547 114 HPLPLALAILQRTLRS-----GCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKS-IGYHPDCGTCNYLVSSL----CA 183 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~-~g~~~~~~~~~~ll~~~----~~ 183 (343)
|+++.|++.+-.+.+. ....+......++..+.. .++++...+.+..+.+ +|..+.. ...++..+ ..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~-~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLAS-RNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHH-HSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHHHHhc
Confidence 7788898887766532 234455666777776545 4579888787776654 3433322 23333333 22
Q ss_pred cCcHHH--HHHHHHHhhhCCCCCC---H-----hhHHHHHHHHhcCCChhHHHHHHHHHHhc-CCCCCc---hhHHHHHH
Q 046547 184 IDQLVE--AAKVLKGMSSAECVPD---L-----ESYSIVIGAMSTARKTNDAVEMMKEMVLN-MGLMPR---QGMVIKVA 249 (343)
Q Consensus 184 ~~~~~~--a~~~~~~m~~~~~~~~---~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~p~---~~~~~~li 249 (343)
....+. -..+.+... .+... . .....|...+...|++.+|.+++.++... .|..+. ...|...+
T Consensus 107 ~~~~d~~~~~~~i~~l~--~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~ 184 (445)
T 4b4t_P 107 SKSLDLNTRISVIETIR--VVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQM 184 (445)
T ss_dssp HCTTHHHHHHHHHHCCS--SSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHHH--HHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 333222 222222221 12211 1 11246778888899999999999998753 122222 34567778
Q ss_pred HHHHhCccHHHHHHHHHHHHH----cCCCCc--hhhHHHHHHHHHhcccHhHHHHHHHHHhH
Q 046547 250 AALRANREMWKAVEMIEFLER----KGCPIG--FQGYEVVVEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 250 ~~~~~~~~~~~a~~~~~~m~~----~g~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+.|...+++.+|..+++.... ....|+ ..-|...+..+...+++.+|.+.|.+..+
T Consensus 185 rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 185 ELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 888889999999998888642 222222 22456667777788888888888877654
No 257
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=77.67 E-value=22 Score=27.30 Aligned_cols=90 Identities=9% Similarity=-0.049 Sum_probs=52.7
Q ss_pred hHHHHHHHHhcCCCCCCCChhhHHHHHHH--HhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHH
Q 046547 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSY--TLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVAD 157 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~--~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~ 157 (343)
..+++....+.......-|..-...-|.. .+ ..++..++..+|..|...|+--....|-.--..+....+++++|.+
T Consensus 58 ~lLErc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~ 136 (202)
T 3esl_A 58 STMERCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKV 136 (202)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 45666666665543344454444443420 22 1344678888888888777765554443333333444456888888
Q ss_pred HHHHHHhcCCccC
Q 046547 158 ILLEMKSIGYHPD 170 (343)
Q Consensus 158 ~~~~m~~~g~~~~ 170 (343)
+|+.-.+.+-+|-
T Consensus 137 Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 137 LLELGAENNCRPY 149 (202)
T ss_dssp HHHHHHHTTCBSH
T ss_pred HHHHHHHcCCccH
Confidence 8888877776663
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=74.87 E-value=11 Score=30.54 Aligned_cols=72 Identities=11% Similarity=0.052 Sum_probs=50.2
Q ss_pred HHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCC--CCCCHHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERG--FIPYIKVRQKVVEG 321 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g--~~p~~~~~~~li~~ 321 (343)
+..+.+.|++++|++....-++.. +-|...-..|++-+|-.|+++.|.+=++...+.. ..|...+|..+|.+
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a 77 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA 77 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH
Confidence 345667888888888888777643 3356666778888999999999988777665542 23445566666654
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=74.59 E-value=31 Score=30.08 Aligned_cols=118 Identities=8% Similarity=-0.047 Sum_probs=74.3
Q ss_pred hHHHHHHHHHHHhcCC-Cc-cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCc--cCHhhHHHHHHHHHccCcHHHHH
Q 046547 116 LPLALAILQRTLRSGC-VP-VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYH--PDCGTCNYLVSSLCAIDQLVEAA 191 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~-~p-~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~--~~~~~~~~ll~~~~~~~~~~~a~ 191 (343)
.++-.+.+....+... .. -..+...+-..|++.| ++++|.+.+.++...-.. --...+-.++..+...+++..+.
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~G-d~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~ 188 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIG-DKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVK 188 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHC-CCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Confidence 4444444454444221 12 2234566777777775 799999999999765322 23466778888999999999999
Q ss_pred HHHHHhhh---CCCCCCHhh--HHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 192 KVLKGMSS---AECVPDLES--YSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 192 ~~~~~m~~---~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
..+.+... .+..|+... ...-...+...+++..|.+.|-+...
T Consensus 189 ~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 189 EKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 99988753 333333321 12222334557788888888777664
No 260
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=73.81 E-value=31 Score=27.22 Aligned_cols=90 Identities=10% Similarity=-0.000 Sum_probs=45.4
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcC-CCCC----chhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHH
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNM-GLMP----RQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~-~~~p----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~ 286 (343)
-++.+....++++|..++++..... +.++ +...-...+..-.....-.-+..+.+++.. .++...-...+..
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~~---~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSILS---SNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHT---CSSHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCHHHHHHHHHH
Confidence 4666777777777777777665320 1111 112222333333444444444444444422 3334444455566
Q ss_pred HHhcccHhHHHHHHHHHh
Q 046547 287 CLECREYILAGKTVMGMT 304 (343)
Q Consensus 287 ~~~~g~~~~a~~~~~~m~ 304 (343)
+.+.|+.++|.++|=+..
T Consensus 101 L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 101 MIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHCCChhHHHHHHHHHH
Confidence 666777777776665543
No 261
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=73.39 E-value=21 Score=25.15 Aligned_cols=65 Identities=8% Similarity=0.117 Sum_probs=39.3
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCC
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCP 274 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~ 274 (343)
..+.++.-|...|+.++|.+.++++.. ...-...++.++..++-+.+ ..+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~--p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC--CccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 356677777777888888888887752 11122344455555555543 345667777777666554
No 262
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=72.22 E-value=19 Score=26.23 Aligned_cols=66 Identities=8% Similarity=0.116 Sum_probs=42.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhC--ccHHHHHHHHHHHHHcCCCC
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRAN--REMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~--~~~~~a~~~~~~m~~~g~~p 275 (343)
..+.++.-|...|+.++|.+.++++.. ...-...++.++..++-+. ...+.+..++..+.+.|+-+
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~--p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is 78 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEV--PHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTIT 78 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC--GGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCC--CcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcC
Confidence 456778888888888888888888753 1122334455555565553 23556777777777666543
No 263
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=72.20 E-value=37 Score=27.35 Aligned_cols=186 Identities=11% Similarity=-0.021 Sum_probs=86.6
Q ss_pred HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccH---HHHHHHHHH
Q 046547 68 SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVP---QIRLLLSSA 144 (343)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~ 144 (343)
|-+...+..|..+.++.+++....... ++ -++.|. ..+..|+.+-+..+ .+.|..++. ...+.|..+
T Consensus 33 t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~--g~t~L~--~A~~~g~~~~v~~L----l~~ga~~~~~d~~g~t~L~~A 102 (285)
T 3kea_A 33 SASYYAIADNNVRLVCTLLNAGALKNL--LE--NEFPLH--QAATLEDTKIVKIL----LFSGLDDSQFDDKGNTALYYA 102 (285)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTTGGGSC--CT--TCCHHH--HHTTSSSCHHHHHH----HHTTCCTTCCCTTSCCHHHHH
T ss_pred CHHHHHHHcCCHHHHHHHHhCCCCCCC--CC--CCCHHH--HHHHcCCHHHHHHH----HHCCCCCCCcCCCCCcHHHHH
Confidence 446666677777777777776433211 12 223333 34455665544333 345554432 233444443
Q ss_pred HHhccCchhHHHHHHHHHHhcCCccCHhh---HHHHHHHHHccCcHHHHHHHHHHhhhCCCCC-CHhhHHHHHHHHhcCC
Q 046547 145 WLERRCQSQSVADILLEMKSIGYHPDCGT---CNYLVSSLCAIDQLVEAAKVLKGMSSAECVP-DLESYSIVIGAMSTAR 220 (343)
Q Consensus 145 ~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~ 220 (343)
+..+ ..+ +.+.+.+.|..++... +.+.+...+..|+.+-+ +.+.+.|..+ +...-.+.+...+..|
T Consensus 103 -~~~g-~~~----~v~~Ll~~ga~~~~~~~~g~~t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~g~t~L~~A~~~g 172 (285)
T 3kea_A 103 -VDSG-NMQ----TVKLFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIV----SYFLSEIPSTFDLAILLSCIHITIKNG 172 (285)
T ss_dssp -HHTT-CHH----HHHHHHHHCGGGGGCSSSGGGSHHHHHHHTTCHHHH----HHHHTTSCTTCCCSTHHHHHHHHHHTT
T ss_pred -HHcC-CHH----HHHHHHhcCCCCCccCCCCCCCHHHHHHHcCCHHHH----HHHHhCCCccccccCCccHHHHHHHcC
Confidence 4443 343 3334444566555432 23445555566665543 3334444333 2212233444555667
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG 279 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 279 (343)
+.+-+.-+++.-.. ... .|..-.+..+...+..|+. ++.+.+.+.|..|+...
T Consensus 173 ~~~~v~~Ll~~gad-~n~-~~~~g~t~~L~~A~~~~~~----~~v~~Ll~~gad~~~~~ 225 (285)
T 3kea_A 173 HVDMMILLLDYMTS-TNT-NNSLLFIPDIKLAIDNKDI----EMLQALFKYDINIYSAN 225 (285)
T ss_dssp CHHHHHHHHHHHHH-TCT-TCCCBCCTTHHHHHHHTCH----HHHHHHTTSCBCSTTTT
T ss_pred hHHHHHHHHHcCCC-CCc-ccCCCCChHHHHHHHcCCH----HHHHHHHHcCCCCCCCC
Confidence 76655555544322 111 2222223323333444443 34555566677766554
No 264
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=71.95 E-value=17 Score=26.90 Aligned_cols=24 Identities=8% Similarity=0.036 Sum_probs=12.8
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHH
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEM 232 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m 232 (343)
+..+.+++...|++.+|...|++.
T Consensus 66 l~~ladalf~~~eyrrA~~~y~qA 89 (167)
T 3ffl_A 66 LVYHADSLFHDKEYRNAVSKYTMA 89 (167)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcccHHHHHHHHHHHH
Confidence 344445555555555555555553
No 265
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=71.09 E-value=11 Score=29.16 Aligned_cols=192 Identities=9% Similarity=-0.019 Sum_probs=96.0
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHH---HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQ---IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
|..-++.|. ..+..|+.+.+..+++.+.+.|..++.. ..+.|..+ +..+ +.+ +++.+.+.|..++....
T Consensus 6 d~~g~t~L~--~A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A-~~~~-~~~----~v~~Ll~~g~~~~~~~~ 77 (241)
T 1k1a_A 6 DEDGDTPLH--IAVVQGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLA-VITT-LPS----VVRLLVTAGASPMALDR 77 (241)
T ss_dssp -CTTCCHHH--HHHHTTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHH-HHTT-CHH----HHHHHHHTTCCTTCCCT
T ss_pred CCCCCcHHH--HHHHcCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHH-HHcC-CHH----HHHHHHHcCCCccccCC
Confidence 333344444 3455689888888888877777665443 34455444 4444 443 45555667766654321
Q ss_pred --HHHHHHHHccCcHHHHHHHHHHhhhCCCCC---CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhH---HH
Q 046547 175 --NYLVSSLCAIDQLVEAAKVLKGMSSAECVP---DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGM---VI 246 (343)
Q Consensus 175 --~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~---~~ 246 (343)
...+...+..|+.+-+..+++.....+..+ +....+.+. ..+..|+.+ +++.+.+ .|..++... -.
T Consensus 78 ~g~t~l~~A~~~~~~~~~~~Ll~~~~~~~~~~~~~~~~g~t~L~-~A~~~~~~~----~~~~Ll~-~g~~~~~~~~~~g~ 151 (241)
T 1k1a_A 78 HGQTAAHLACEHRSPTCLRALLDSAAPGTLDLEARNYDGLTALH-VAVNTECQE----TVQLLLE-RGADIDAVDIKSGR 151 (241)
T ss_dssp TSCCHHHHHHHTTCHHHHHHHHHHSCTTSCCTTCCCTTSCCHHH-HHHHHTCHH----HHHHHHH-TTCCTTCCCTTTCC
T ss_pred CCCCHHHHHHHcCCHHHHHHHHHcCCCccccccccCcCCCcHHH-HHHHcCCHH----HHHHHHH-cCCCcccccccCCC
Confidence 234455556788776666665543222222 222333333 333445543 4444444 355554321 22
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhH--HHHHHHHHhcccHhHHHHHHHHHhHCCCCCC
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGFQGY--EVVVEGCLECREYILAGKTVMGMTERGFIPY 311 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~ 311 (343)
+.+...+..|+.+-+ +.+.+.|..++.... .+.+...+..|+.+-+ +.+.+.|..|+
T Consensus 152 t~L~~A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~v----~~Ll~~ga~~~ 210 (241)
T 1k1a_A 152 SPLIHAVENNSLSMV----QLLLQHGANVNAQMYSGSSALHSASGRGLLPLV----RTLVRSGADSS 210 (241)
T ss_dssp CHHHHHHHTTCHHHH----HHHHHTTCCTTCBCTTSCBHHHHHHHHTCHHHH----HHHHHTTCCTT
T ss_pred cHHHHHHHcCCHHHH----HHHHHcCCCCCCcCCCCCCHHHHHHHcCCHHHH----HHHHhcCCCCC
Confidence 333444566666544 444455666543321 1234444556665533 33445565553
No 266
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=71.06 E-value=24 Score=24.78 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=45.3
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCch
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TNDAVEMMKEMVLNMGLMPRQ 242 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~ 242 (343)
..+.++.-|...|+.++|...++++..... ....+..++..++-+.++ .+.+..++..+... |+-+..
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~f-~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~-~~is~~ 78 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITID 78 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCcc-HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCHH
Confidence 356788889899999999999998863211 123455566666666543 45677788888763 554443
No 267
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=70.73 E-value=25 Score=24.89 Aligned_cols=46 Identities=11% Similarity=0.053 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhh
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSS 199 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 199 (343)
+++.+++++.+.+..-.....-.|--++.+.|++++|.+..+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4444444444433111122222333344455555555555554444
No 268
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=70.53 E-value=51 Score=28.34 Aligned_cols=163 Identities=10% Similarity=-0.069 Sum_probs=78.7
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhC-CCCC---CHhhHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCCCCchhHH--
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSA-ECVP---DLESYSIVIGAMSTAR-KTNDAVEMMKEMVLNMGLMPRQGMV-- 245 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~~---~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~~~~~-- 245 (343)
....|...|.+.|+.++..+++.....- +..| .......+++.+.... ..+.-.++..+..+- . .-+..+|
T Consensus 21 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~-a-~~~~r~flr 98 (394)
T 3txn_A 21 GILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEW-A-KQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHH-H-HHTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH-H-HHHHHHHHH
Confidence 3444556666666666666666554321 0111 1223445555555432 233333333333320 0 0011222
Q ss_pred ----HHHHHHHHhCccHHHHHHHHHHHHHcCCCCc-----hhhHHHHHHHHHhcccHhHHHHHHHHHhHC--CCCCCHHH
Q 046547 246 ----IKVAAALRANREMWKAVEMIEFLERKGCPIG-----FQGYEVVVEGCLECREYILAGKTVMGMTER--GFIPYIKV 314 (343)
Q Consensus 246 ----~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~ 314 (343)
.-+...|...|++.+|.+++..+.+.=-..| ...|-.-++.|...|++.++...+...... .+.|++.+
T Consensus 99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i 178 (394)
T 3txn_A 99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV 178 (394)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence 2466677777777777777776664211111 123444555677777777777777665432 22233332
Q ss_pred HHH----HHHHHh-ccCChhHHHHHHHH
Q 046547 315 RQK----VVEGLA-GVGEWKLATVVRQR 337 (343)
Q Consensus 315 ~~~----li~~~~-~~g~~~~a~~~~~~ 337 (343)
-.. -...+. ..++|..|...|-+
T Consensus 179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~e 206 (394)
T 3txn_A 179 QGALDLQSGILHAADERDFKTAFSYFYE 206 (394)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhccCHHHHHHHHHH
Confidence 211 112344 56777777665543
No 269
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=69.68 E-value=42 Score=26.99 Aligned_cols=51 Identities=14% Similarity=-0.055 Sum_probs=22.6
Q ss_pred HHHHhCccCcchHHHHHHHchhcCCCCChHHHhhhhhhcccchHHHHHHHHh
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEACQNPNPFSFLSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
+...+..|+.+.+..+++.-.... .++-.|-+...+..+..+.++.+++..
T Consensus 35 L~~A~~~g~~~~v~~Ll~~g~~~~-~~~g~t~L~~A~~~g~~~~v~~Ll~~g 85 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNAGALKN-LLENEFPLHQAATLEDTKIVKILLFSG 85 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHTTGGGS-CCTTCCHHHHHTTSSSCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCCCCCC-CCCCCCHHHHHHHcCCHHHHHHHHHCC
Confidence 333444555554444444311111 112233344445556666666666553
No 270
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=69.42 E-value=11 Score=28.25 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=9.0
Q ss_pred hhhhhhcccchHHHHHHHH
Q 046547 70 LSNFPQNHRIKVIDEMLES 88 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~ 88 (343)
+...+..+..+.++.+++.
T Consensus 43 L~~A~~~~~~~~v~~Ll~~ 61 (201)
T 3hra_A 43 LNIAVHNNDIEIAKALIDR 61 (201)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHc
Confidence 3334444555555555544
No 271
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=67.50 E-value=48 Score=26.78 Aligned_cols=114 Identities=9% Similarity=0.060 Sum_probs=64.8
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCch----hhHHHHHHHHHh
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGF----QGYEVVVEGCLE 289 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~li~~~~~ 289 (343)
....+.|++++|+.....-.+ .-+-|...-..|++.+|-.|+|++|.+-++...+. .|+. .+|..+|.+
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR--~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI~a--- 77 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKA--- 77 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHH---
T ss_pred HHHHhCCCHHHHHHHHHHHHH--hCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHHHH---
Confidence 345667777777777777664 44556667777777788888888887777766652 3332 233333322
Q ss_pred cccHhHHHHHHHHHhHCCCCC-----CHHHHHHHHHHHhc--cCChhHHHHHHHHHHhh
Q 046547 290 CREYILAGKTVMGMTERGFIP-----YIKVRQKVVEGLAG--VGEWKLATVVRQRFAEL 341 (343)
Q Consensus 290 ~g~~~~a~~~~~~m~~~g~~p-----~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~ 341 (343)
+..=.+....+-.| ...-...++.++.. .|+.++|.++-++..+.
T Consensus 78 -------E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 78 -------AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp -------HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 22222222222222 23334555555543 47777777777766543
No 272
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=67.40 E-value=20 Score=27.66 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=10.5
Q ss_pred HHHhCccCcchHHHHHHHchhcC
Q 046547 39 RAAVDAKDYQQIPELLGSFEEAC 61 (343)
Q Consensus 39 ~~~~~~~~~~~a~~~~~~m~~~~ 61 (343)
...++.|+.+.+..+++.+...|
T Consensus 14 ~~A~~~g~~~~v~~Ll~~~~~~~ 36 (241)
T 1k1a_A 14 HIAVVQGNLPAVHRLVNLFQQGG 36 (241)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC
Confidence 33444455555555554433333
No 273
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=67.22 E-value=61 Score=27.89 Aligned_cols=24 Identities=17% Similarity=0.088 Sum_probs=11.1
Q ss_pred HHHHHHHHHccCcHHHHHHHHHHh
Q 046547 174 CNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 174 ~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
|-.-+..|...+++.++...+...
T Consensus 142 ~lle~~~~~~~~n~~k~k~~l~~a 165 (394)
T 3txn_A 142 QLLESKTYHALSNLPKARAALTSA 165 (394)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHH
Confidence 333344444445555555444444
No 274
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=66.72 E-value=34 Score=24.84 Aligned_cols=68 Identities=10% Similarity=0.176 Sum_probs=46.6
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCch
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TNDAVEMMKEMVLNMGLMPRQ 242 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~ 242 (343)
..+.+|.-|...|+.++|...++++..... ....++.++..++-+.++ .+.+..++..+... ++-+..
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~f-~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~-~~is~~ 80 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKS-STITID 80 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGGG-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHT-TCSCHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCcc-hHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHC-CCcCHH
Confidence 457788999999999999999999863211 124455666667766433 45677888888763 554443
No 275
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=66.35 E-value=0.012 Score=51.86 Aligned_cols=136 Identities=17% Similarity=0.136 Sum_probs=84.1
Q ss_pred HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 171 CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 171 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
+..|..|-.+..+.+++.+|++.| .+. -|...|..++.+..+.|.+++-++++....++ . -++..=+.|+.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsy---IkA---~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~--ke~~IDteLi~ 124 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSY---IKA---DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-A--RESYVETELIF 124 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSS---CCC---SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-C--CSTTTTHHHHH
T ss_pred ccHHHHHHHHHHccCchHHHHHHH---HhC---CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-h--cccccHHHHHH
Confidence 456777777777777777665443 121 25566778888888888888888877766542 3 23344568888
Q ss_pred HHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhH
Q 046547 251 ALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKL 330 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 330 (343)
+|++.++..+-.+++. .||..-...+-+-|...|.++.|.-+|..+. .|..|-..+++.|++..
T Consensus 125 ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~is---------N~akLAstLV~L~~yq~ 188 (624)
T 3lvg_A 125 ALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQA 188 (624)
T ss_dssp HHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSC---------CCTTTSSSSSSCSGGGS
T ss_pred HHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCc---------cHHHHHHHHHHHHHHHH
Confidence 8888887654333322 3666666666777777777777766665332 23334444455555544
Q ss_pred H
Q 046547 331 A 331 (343)
Q Consensus 331 a 331 (343)
|
T Consensus 189 A 189 (624)
T 3lvg_A 189 A 189 (624)
T ss_dssp S
T ss_pred H
Confidence 4
No 276
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.27 E-value=27 Score=25.40 Aligned_cols=51 Identities=16% Similarity=0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 046547 154 SVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 204 (343)
++.++|..|..+|+-.. +..|...-..+-..|++++|.++|..-.+.+-.|
T Consensus 83 dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 83 DLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp CHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred CHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 35666666666554333 2345555555556666666666666666655555
No 277
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=64.95 E-value=16 Score=28.10 Aligned_cols=201 Identities=9% Similarity=-0.037 Sum_probs=98.7
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh---HHHHHHHHHc
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT---CNYLVSSLCA 183 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~---~~~ll~~~~~ 183 (343)
.+..|+++.+..++ +.|..++. ...+.+..+ +..+ +.+ +++.+.+.|..++... -...+...+.
T Consensus 16 A~~~g~~~~~~~Ll----~~g~~~~~~~~~g~t~L~~A-~~~~-~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~ 85 (240)
T 3eu9_A 16 ATQYGIYERCRELV----EAGYDVRQPDKENVTLLHWA-AINN-RID----LVKYYISKGAIVDQLGGDLNSTPLHWATR 85 (240)
T ss_dssp HHHTTCHHHHHHHH----HTTCCTTCCCTTSCCHHHHH-HHTT-CHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHH
T ss_pred HHHcCChHHHHHHH----HcCCCcCCCCCCCCCHHHHH-HHhC-CHH----HHHHHHHcCCcchhhcCCcCCChhHHHHH
Confidence 34558766554444 46655443 333444443 5554 454 4445555665443221 1233445556
Q ss_pred cCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHhCcc
Q 046547 184 IDQLVEAAKVLKGMSSAECVPDL---ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANRE 257 (343)
Q Consensus 184 ~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~ 257 (343)
.|+.+-+ +.+.+.|..++. ...+. +...+..|+.+ +++.+.+ .|..++. .-.+.+..+..+.+.
T Consensus 86 ~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~~~~----~~~~Ll~-~~~~~~~~~~~g~t~l~~a~~~~~~ 155 (240)
T 3eu9_A 86 QGHLSMV----VQLMKYGADPSLIDGEGCSC-IHLAAQFGHTS----IVAYLIA-KGQDVDMMDQNGMTPLMWAAYRTHS 155 (240)
T ss_dssp HTCHHHH----HHHHHTTCCTTCCCTTSCCH-HHHHHHTTCHH----HHHHHHH-TTCCTTCCCTTSCCHHHHHHHHCCS
T ss_pred cCCHHHH----HHHHHcCCCCcccCCCCCCH-HHHHHHcCHHH----HHHHHHh-cCCCccccCCCCCcHHHHHHHhCCh
Confidence 6776544 444455655443 22233 34445556654 4444444 3555533 334556655544443
Q ss_pred HHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHH--HHHHHHHHhccCChhHHH
Q 046547 258 MWKAVEMIEFLERKGCPIGFQG---YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKV--RQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~ 332 (343)
.+ +.+.+.+.|..++... -...+...+..|+.+-+..++ +.|..|+... -.+-+....+.|+.+-+.
T Consensus 156 ~~----~~~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll----~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~ 227 (240)
T 3eu9_A 156 VD----PTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL----EAGANVDAQNIKGESALDLAKQRKNVWMIN 227 (240)
T ss_dssp ST----THHHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHHHHH----HHTCCTTCBCTTSCBHHHHHHHTTCHHHHH
T ss_pred HH----HHHHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHHHHH----HcCCCCCCcCCCCCCHHHHHHHcCcHHHHH
Confidence 32 2333445555554322 113445556677766544444 4455553221 123455667778887777
Q ss_pred HHHHHH
Q 046547 333 VVRQRF 338 (343)
Q Consensus 333 ~~~~~m 338 (343)
.+++.-
T Consensus 228 ~L~~~~ 233 (240)
T 3eu9_A 228 HLQEAR 233 (240)
T ss_dssp HHHHHC
T ss_pred HHHHhh
Confidence 766643
No 278
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=64.62 E-value=38 Score=24.62 Aligned_cols=87 Identities=10% Similarity=0.103 Sum_probs=58.3
Q ss_pred hHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHH
Q 046547 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~ 159 (343)
..+++.++.+.......-|..-...-|. ++. ..+++..+|..|..+|+--....|-.--..+....+++++|.++|
T Consensus 49 ~lLErc~~~f~~~~~YknD~RyLklWl~--ya~--~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 124 (152)
T 4a1g_A 49 TLLEHLMKEFLDKKKYHNDPRFISYCLK--FAE--YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVL 124 (152)
T ss_dssp HHHHHHHHHHTTCGGGTTCHHHHHHHHH--HHT--TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHH--HHH--hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4556666666554444456666666664 222 234589999999999887665554444344444456799999999
Q ss_pred HHHHhcCCccC
Q 046547 160 LEMKSIGYHPD 170 (343)
Q Consensus 160 ~~m~~~g~~~~ 170 (343)
+.-.+.+-+|-
T Consensus 125 ~~Gi~~~A~P~ 135 (152)
T 4a1g_A 125 QRGIQNQAEPR 135 (152)
T ss_dssp HHHHHTTCBSH
T ss_pred HHHHHcCCccH
Confidence 99988887774
No 279
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=64.41 E-value=35 Score=25.48 Aligned_cols=20 Identities=10% Similarity=-0.084 Sum_probs=9.1
Q ss_pred CChHHHHHHHHHHHhcCCCc
Q 046547 114 HPLPLALAILQRTLRSGCVP 133 (343)
Q Consensus 114 ~~~~~a~~~~~~m~~~~~~p 133 (343)
|+.+.-.++.+.+.+.|..+
T Consensus 49 ~~~~~~~~iv~~Ll~~Gadv 68 (186)
T 3t8k_A 49 NNDEARYKISMFLINKGADI 68 (186)
T ss_dssp SCHHHHHHHHHHHHHTTCCS
T ss_pred CCcchHHHHHHHHHHCCCCC
Confidence 44444444444444555444
No 280
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=64.31 E-value=32 Score=27.16 Aligned_cols=90 Identities=8% Similarity=-0.055 Sum_probs=57.9
Q ss_pred HHHHHHccCcHHHHHHHHHHhhhC--CCCC----CHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHH
Q 046547 177 LVSSLCAIDQLVEAAKVLKGMSSA--ECVP----DLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 177 ll~~~~~~~~~~~a~~~~~~m~~~--~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~ 250 (343)
-+..+....++++|.+++++..+. +.++ +.......+..-.....-.-+..+.+++. . .++...-...+.
T Consensus 24 eLDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~--~--~~~~~~~r~~v~ 99 (235)
T 2d2s_A 24 EIDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL--S--SNEIVHLKSGTE 99 (235)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH--T--CSSHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH--h--cCCHHHHHHHHH
Confidence 578899999999999999987642 2332 11222233333333333333444555553 2 455666677788
Q ss_pred HHHhCccHHHHHHHHHHHHH
Q 046547 251 ALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 251 ~~~~~~~~~~a~~~~~~m~~ 270 (343)
.+.+-|+.++|.++|=+...
T Consensus 100 ~L~rLg~~~~A~~lfL~~rs 119 (235)
T 2d2s_A 100 NMIKLGLPEQALDLFLQNRS 119 (235)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHCCChhHHHHHHHHHHH
Confidence 89999999999999987765
No 281
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=64.28 E-value=46 Score=25.49 Aligned_cols=56 Identities=13% Similarity=0.178 Sum_probs=41.3
Q ss_pred CCChhHHHHHHHHHHhcCCCCCc-hhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCC
Q 046547 219 ARKTNDAVEMMKEMVLNMGLMPR-QGMVIKVAAALRANREMWKAVEMIEFLERKGCPI 275 (343)
Q Consensus 219 ~~~~~~a~~~~~~m~~~~~~~p~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 275 (343)
++...++.++|..|..+ |+--. ...|-.-...+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~-~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNK-GIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHH-TSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 44466888888888875 66443 4457777777788888888888888877777776
No 282
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=64.05 E-value=9 Score=30.34 Aligned_cols=53 Identities=13% Similarity=0.019 Sum_probs=31.9
Q ss_pred HHHHHhCccCcchHHHHHHHchhcCCCCChH---------HHhhhh---hhcccchHHHHHHHHh
Q 046547 37 TVRAAVDAKDYQQIPELLGSFEEACQNPNPF---------SFLSNF---PQNHRIKVIDEMLESF 89 (343)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---------~~~~~~---~~~~~~~~~~~~~~~~ 89 (343)
.+...++.|+.+.+..+++.+...|..++.. |-+... +..+..+.++.+++..
T Consensus 8 ~L~~A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 4555667788888888887666655544422 222222 2567777777777754
No 283
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=63.77 E-value=24 Score=22.13 Aligned_cols=61 Identities=13% Similarity=0.074 Sum_probs=39.2
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcc-cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECR-EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.+.+.|+.++..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556777766544 34555555554 5666778888887776555666766677777776643
No 284
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=63.70 E-value=44 Score=24.98 Aligned_cols=48 Identities=8% Similarity=0.102 Sum_probs=20.3
Q ss_pred HHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC
Q 046547 155 VADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203 (343)
Q Consensus 155 a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 203 (343)
+..++..+.+.|+--|..--...+....+.|.+ ....+-.++.+.|+.
T Consensus 52 ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~KGI~ 99 (177)
T 3e3v_A 52 ISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKKGID 99 (177)
T ss_dssp HHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTTTCC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHcCCC
Confidence 334444445555444444444444444333221 123334445555553
No 285
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=63.41 E-value=40 Score=25.81 Aligned_cols=20 Identities=10% Similarity=0.054 Sum_probs=10.4
Q ss_pred hhhhhhcccchHHHHHHHHh
Q 046547 70 LSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ 89 (343)
+...+..+..+.++.+++..
T Consensus 41 L~~A~~~g~~~~v~~Ll~~~ 60 (232)
T 2rfa_A 41 LHIAALYDNLEAAMVLMEAA 60 (232)
T ss_dssp HHHHHHTTCHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHcC
Confidence 44444555555555555543
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=63.04 E-value=30 Score=24.79 Aligned_cols=61 Identities=11% Similarity=-0.026 Sum_probs=36.9
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.+.+.|++++..= ..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3556676655432 334555555566667777887777766555655555555666666643
No 287
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=62.86 E-value=24 Score=26.36 Aligned_cols=13 Identities=23% Similarity=0.102 Sum_probs=6.8
Q ss_pred cCCChHHHHHHHH
Q 046547 112 SLHPLPLALAILQ 124 (343)
Q Consensus 112 ~~~~~~~a~~~~~ 124 (343)
..|+.+.+..++.
T Consensus 14 ~~g~~~~v~~ll~ 26 (201)
T 3hra_A 14 NQRDTKKVKEILQ 26 (201)
T ss_dssp HTTCHHHHHHHHT
T ss_pred HhccHHHHHHHHH
Confidence 3456555555554
No 288
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=62.30 E-value=72 Score=27.02 Aligned_cols=70 Identities=10% Similarity=0.007 Sum_probs=45.6
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcc--cHhHHHHHHHHHhHCCCCCCHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECR--EYILAGKTVMGMTERGFIPYIKVR 315 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~g~~p~~~~~ 315 (343)
.+.++.-|...++.++|.+.++++.--.+. ....+.++..++-+.+ ..+.+.+++..+...|+.+.....
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~fh-he~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~ 291 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHFH-HELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMK 291 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTCH-HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcch-HHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 577888888888999999988887532221 1234455555565543 345677888888887766544433
No 289
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.06 E-value=28 Score=25.72 Aligned_cols=52 Identities=10% Similarity=0.030 Sum_probs=32.1
Q ss_pred HHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC
Q 046547 154 SVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD 205 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~ 205 (343)
+...+|..|..+|+-.. +..|...-..+-..|++.+|.++|..-.+.+-.|-
T Consensus 78 ~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~ 130 (164)
T 2wvi_A 78 EPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPL 130 (164)
T ss_dssp CHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred CHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 45667777766665443 23455555556666777777777777666666664
No 290
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=59.34 E-value=26 Score=27.04 Aligned_cols=22 Identities=5% Similarity=-0.083 Sum_probs=13.4
Q ss_pred HHHHHhcccHhHHHHHHHHHhH
Q 046547 284 VEGCLECREYILAGKTVMGMTE 305 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~ 305 (343)
+......|+...++++.+.+.+
T Consensus 214 l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 214 LQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 3444566666667776666654
No 291
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=59.29 E-value=33 Score=24.73 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=36.0
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.+.+.|++++.. =..++..+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 17 ~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 17 SIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 455667665443 2344555556666677888888877766555666555555666666643
No 292
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=59.08 E-value=82 Score=26.65 Aligned_cols=29 Identities=17% Similarity=0.286 Sum_probs=22.4
Q ss_pred HHHHHHHHHhCccCcchHHHHHHHchhcC
Q 046547 33 TLEETVRAAVDAKDYQQIPELLGSFEEAC 61 (343)
Q Consensus 33 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 61 (343)
....+|.-|...++.++|...++++....
T Consensus 56 ~~~~ii~EYf~~~d~~Ea~~~l~eL~~p~ 84 (358)
T 3eiq_C 56 TLTPIIQEYFEHGDTNEVAEMLRDLNLGE 84 (358)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTTCCG
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHhCCch
Confidence 35667888888899999999998876433
No 293
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=58.85 E-value=52 Score=24.27 Aligned_cols=89 Identities=10% Similarity=-0.058 Sum_probs=58.7
Q ss_pred chHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHH
Q 046547 79 IKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADI 158 (343)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~ 158 (343)
...+++....+.......-|..-...-|. +.... +.+..+|..|..+|+--....|-.--..++...+++.+|.++
T Consensus 43 ~~lLErc~~~f~~~~~YknD~RyLklWl~-ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~I 118 (164)
T 2wvi_A 43 STLLERAVEALQGEKRYYSDPRFLNLWLK-LGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAI 118 (164)
T ss_dssp HHHHHHHHHHTTTCGGGTTCHHHHHHHHH-HHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhhhhhhhccCHHHHHHHHH-HHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence 34566677776654444446655555564 22222 447789999999988766655444444444555679999999
Q ss_pred HHHHHhcCCccCH
Q 046547 159 LLEMKSIGYHPDC 171 (343)
Q Consensus 159 ~~~m~~~g~~~~~ 171 (343)
|+.-.+.+-.|-.
T Consensus 119 y~~Gi~~~A~P~~ 131 (164)
T 2wvi_A 119 FQEGIQQKAEPLE 131 (164)
T ss_dssp HHHHHHTTCBSHH
T ss_pred HHHHHHcCCCcHH
Confidence 9999998888854
No 294
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.28 E-value=39 Score=27.91 Aligned_cols=59 Identities=14% Similarity=0.148 Sum_probs=39.5
Q ss_pred HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC--hhHHHHHHHHHH
Q 046547 280 YEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE--WKLATVVRQRFA 339 (343)
Q Consensus 280 ~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m~ 339 (343)
.+.++.-|...|+.++|.+.++++....+.+ ..+...+..++-+.++ .+.+.+++..+.
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~ 229 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLW 229 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHH
Confidence 4578888999999999999999986432222 3445556666666533 445566666654
No 295
>4fke_A Aminopeptidase N; zinc aminopeptidase, hydrolase; HET: NAG; 1.85A {Sus scrofa} PDB: 4fkh_A* 4fkk_A* 4fkn_A* 4fkf_A* 4f5c_A* 4fyt_A* 4fyr_A* 4fys_A* 4fyq_A*
Probab=58.09 E-value=1.4e+02 Score=29.00 Aligned_cols=144 Identities=11% Similarity=0.025 Sum_probs=76.8
Q ss_pred HHHHHHHHccCc---HHHHHHHHHHhhhCC----CCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 175 NYLVSSLCAIDQ---LVEAAKVLKGMSSAE----CVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 175 ~~ll~~~~~~~~---~~~a~~~~~~m~~~~----~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
..++...|..|. .+.|.+.|+.....+ +.||.. +.+...-.+.|.-++-..+++..... .+..--..
T Consensus 690 ~~~l~~ac~~g~~~c~~~a~~~f~~~~~~~~~~~i~~dlr--~~vy~~~~~~g~~~~~~~l~~~~~~~----~~~~ek~~ 763 (909)
T 4fke_A 690 INAISTACSNGLPQCENLAKTLFDQWMSDPENNPIHPNLR--STIYCNAIAQGGQDQWDFAWGQLQQA----QLVNEADK 763 (909)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTCTTSCCSCTTTH--HHHHHHHHHHSCHHHHHHHHHHHHHC----CSHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHhhCCCCCcCCHHHH--HHHHHHHHHhCCHHHHHHHHHHHHcc----CCHHHHHH
Confidence 345666777776 456777787765432 556644 22333344556655555566666541 23334567
Q ss_pred HHHHHHhCccHHHHHHHHHHHHHcC-CCCchhhHHHHHHHHHh-cccHhHHHHHHHHHhH---CCCCCCHHHHHHHHHHH
Q 046547 248 VAAALRANREMWKAVEMIEFLERKG-CPIGFQGYEVVVEGCLE-CREYILAGKTVMGMTE---RGFIPYIKVRQKVVEGL 322 (343)
Q Consensus 248 li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~---~g~~p~~~~~~~li~~~ 322 (343)
++.+++...+.+...++++...... +++. .... ++.+... .-..+.|.+++.+=-+ ..+......+..+|.+.
T Consensus 764 ll~aL~~~~d~~~l~~~L~~~l~~~~ir~q-d~~~-~~~~v~~n~~g~~~~~~f~~~n~~~l~~~~~~~~~~~~~~i~~~ 841 (909)
T 4fke_A 764 LRSALACSNEVWLLNRYLGYTLNPDLIRKQ-DATS-TINSIASNVIGQPLAWDFVQSNWKKLFQDYGGGSFSFSNLIQGV 841 (909)
T ss_dssp HHHHHTTCCCHHHHHHHHHHTTCTTTSCGG-GHHH-HHHHHHHSTTHHHHHHHHHHHHCTTTTTSSSSCCCCHHHHHHHH
T ss_pred HHHHhCCCCCHHHHHHHHHHHhCCCCCchh-hHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 8888888888888888887766533 4432 2222 3333332 2223455555544211 11222333455566555
Q ss_pred hccC
Q 046547 323 AGVG 326 (343)
Q Consensus 323 ~~~g 326 (343)
...-
T Consensus 842 ~~~~ 845 (909)
T 4fke_A 842 TRRF 845 (909)
T ss_dssp HTTC
T ss_pred HHhc
Confidence 5443
No 296
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=57.72 E-value=33 Score=24.23 Aligned_cols=59 Identities=12% Similarity=0.104 Sum_probs=30.4
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcc-cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 268 LERKGCPIGFQGYEVVVEGCLECR-EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 268 m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 9 l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 9 LRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp HHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred HHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 445565554322 23444444444 555666666666666544455554444455555553
No 297
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=57.54 E-value=66 Score=25.08 Aligned_cols=86 Identities=8% Similarity=0.047 Sum_probs=44.7
Q ss_pred hHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHH
Q 046547 80 KVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADIL 159 (343)
Q Consensus 80 ~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~ 159 (343)
..+++....+.......-|..-...-|. |+.. .+.+..+|..|...|+--....|-.--..++...+++.+|.++|
T Consensus 98 ~lLErc~~~F~~~~rYknD~RyLklWl~--Ya~~--~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy 173 (223)
T 4aez_C 98 TLLERCTREFVRNPLYKDDVRYLRIWMQ--YVNY--IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVY 173 (223)
T ss_dssp HHHHHHHHHTTTCGGGTTCHHHHHHHHH--HHTT--CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHhcccccccCCHHHHHHHHH--HHHc--cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 4555555555543333445555555553 2221 24566677777666665444443333333333334577777777
Q ss_pred HHHHhcCCcc
Q 046547 160 LEMKSIGYHP 169 (343)
Q Consensus 160 ~~m~~~g~~~ 169 (343)
+.-.+.+-.|
T Consensus 174 ~~Gi~~~A~P 183 (223)
T 4aez_C 174 QKGKRMKAKP 183 (223)
T ss_dssp HHHHHHTCBS
T ss_pred HHHHHcCCcc
Confidence 6666665555
No 298
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=57.11 E-value=90 Score=26.48 Aligned_cols=67 Identities=10% Similarity=0.092 Sum_probs=34.4
Q ss_pred HHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc----HHHHHHHHHHHHhcc-CchhHHHHHHHHHHhcCCccCHhhH
Q 046547 102 YDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV----PQIRLLLSSAWLERR-CQSQSVADILLEMKSIGYHPDCGTC 174 (343)
Q Consensus 102 ~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~~-~~~~~a~~~~~~m~~~g~~~~~~~~ 174 (343)
..++|..++ ..|++++|...++++.. |+ ...+..+..+ ..+. ..-+.+-.++..+...|+-+.....
T Consensus 15 ~~~ii~EY~-~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~a-Ler~~~~re~~~~LL~~L~~~~~ls~~~~~ 86 (364)
T 3l6a_A 15 TETVVTEYL-NSGNANEAVNGVREMRA----PKHFLPEMLSKVIILS-LDRSDEDKEKASSLISLLKQEGIATSDNFM 86 (364)
T ss_dssp HHHHHHHHH-HHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHH-HTSCHHHHHHHHHHHHHHHHTTSSCHHHHH
T ss_pred HHHHHHHHH-hCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHH-HCCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 445565444 44788888888888743 32 1222333333 3322 1123455666677666554443333
No 299
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=56.90 E-value=0.98 Score=40.12 Aligned_cols=188 Identities=9% Similarity=0.012 Sum_probs=106.8
Q ss_pred HHHHHHHHhcCCCCCCCChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHH
Q 046547 81 VIDEMLESFIPLRPRSRPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILL 160 (343)
Q Consensus 81 ~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~ 160 (343)
.+.++++.+++ . -|...|..+|. ...+.|.+++-.+.+...++..-.|. .=+.|+-+|++.++ ..+..+++
T Consensus 69 ~v~eAIdsyIk--A--~Dps~y~eVi~-~A~~~~~~edLv~yL~MaRk~~ke~~--IDteLi~ayAk~~r-L~elEefl- 139 (624)
T 3lvg_A 69 MVKEAIDSYIK--A--DDPSSYMEVVQ-AANTSGNWEELVKYLQMARKKARESY--VETELIFALAKTNR-LAELEEFI- 139 (624)
T ss_dssp SCTTTTTSSCC--C--SCCCSSSHHHH-HTTTSSCCTTHHHHHHTTSTTCCSTT--TTHHHHHHHHTSCS-SSTTTSTT-
T ss_pred chHHHHHHHHh--C--CChHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHhcccc--cHHHHHHHHHhhCc-HHHHHHHH-
Confidence 34455555543 1 25678888996 78888999999999887776543444 44578888888764 54322221
Q ss_pred HHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCC--------------------CCCCHhhHHHHHHHHhcCC
Q 046547 161 EMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAE--------------------CVPDLESYSIVIGAMSTAR 220 (343)
Q Consensus 161 ~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------------------~~~~~~~~~~ll~~~~~~~ 220 (343)
-.|+..-...+..-|...|.++.|.-+|..+..-. -.-++.||-.+-.+|+..+
T Consensus 140 ------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~ 213 (624)
T 3lvg_A 140 ------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGK 213 (624)
T ss_dssp ------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSC
T ss_pred ------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCch
Confidence 24666666667777777777776665554442211 1235567777777777777
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
.+.-|...--.+.-. || -...++..|-..|.+++.+.+++.-... -......|+-|--.|++-
T Consensus 214 EfrLAqicGLniIvh----ad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY 276 (624)
T 3lvg_A 214 EFRLAQMCGLHIVVH----AD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF 276 (624)
T ss_dssp TTTTTTHHHHHHHCC----SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHhcchhccc----HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc
Confidence 666554443333321 11 1223445555666666666665543321 122334555555455543
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=55.59 E-value=37 Score=24.47 Aligned_cols=61 Identities=13% Similarity=0.063 Sum_probs=35.0
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcc-cHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCCh
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECR-EYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEW 328 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~ 328 (343)
.+.+.|++++..= ..++..+...+ ..-.|.++++.+.+.+...+..|.-.-++.+...|-.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 3556666655432 23445555555 5666777777777766555555555555666666543
No 301
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=54.82 E-value=65 Score=27.63 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=10.3
Q ss_pred hhhhhhcccchHHHHHHHHh
Q 046547 70 LSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~ 89 (343)
+...+..|..+.++-+++..
T Consensus 84 L~~A~~~g~~~~v~~Ll~~g 103 (437)
T 1n11_A 84 LHCAARIGHTNMVKLLLENN 103 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHhCC
Confidence 44444555555555555543
No 302
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=54.50 E-value=30 Score=24.80 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=32.4
Q ss_pred HHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 267 FLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 267 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
.+.+.|++++..= ..+++.+...+ .-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 9 ~L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 9 DLRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 3445666655432 23344444444 56677777777666655555554444566665553
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=54.16 E-value=87 Score=25.66 Aligned_cols=102 Identities=7% Similarity=-0.042 Sum_probs=45.1
Q ss_pred HHhhhCCCCCCHhh--HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc---hhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 195 KGMSSAECVPDLES--YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR---QGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 195 ~~m~~~~~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~---~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
+-+.+.|..++... -.+.+...+..|..+.+..++.. .|..++ ..-.+.|..| ++.|+.+ +.+.+.
T Consensus 223 ~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~----~~~~vn~~d~~G~TpL~~A-~~~g~~~----iv~~Ll 293 (337)
T 4g8k_A 223 HLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQ----EHIEINDTDSDGKTALLLA-VELKLKK----IAELLC 293 (337)
T ss_dssp HHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTS----TTCCTTCBCTTSCBHHHHH-HHTTCHH----HHHHHH
T ss_pred HHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHh----cCCcccCcCCCCCCHHHHH-HHcCCHH----HHHHHH
Confidence 33445555443221 11233344556665554444332 233332 2223344443 4555544 334445
Q ss_pred HcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH
Q 046547 270 RKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312 (343)
Q Consensus 270 ~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 312 (343)
+.|..+|..+ . +..-++.|+.+ +.+-+.+.|-.||.
T Consensus 294 ~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 294 KRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp TTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 6676666554 2 33334555544 33445566655553
No 304
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=53.87 E-value=30 Score=21.69 Aligned_cols=32 Identities=13% Similarity=0.152 Sum_probs=15.0
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
.+.++++.+.+.+...+..|-.-.|..+.+.|
T Consensus 35 s~~el~~~l~~~~~~is~~TVyR~L~~L~~~G 66 (83)
T 2fu4_A 35 SAEDLYKRLIDMGEEIGLATVYRVLNQFDDAG 66 (83)
T ss_dssp CHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 35555555555444444444444444444443
No 305
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=53.00 E-value=1.4e+02 Score=27.47 Aligned_cols=116 Identities=10% Similarity=0.031 Sum_probs=65.2
Q ss_pred CcHHHHHHHHHHhhhCC-CCCCH--hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHH
Q 046547 185 DQLVEAAKVLKGMSSAE-CVPDL--ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKA 261 (343)
Q Consensus 185 ~~~~~a~~~~~~m~~~~-~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a 261 (343)
.+.+.|...|....+.. ..+.. .....+...+...+...++...+...... . ++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR-S--QSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT-C--CCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc-C--CChHHHHHHHHHHHHCCCHHHH
Confidence 36788888887775433 22221 12233333444445455666666665432 2 3333344444555577888888
Q ss_pred HHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHh
Q 046547 262 VEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMT 304 (343)
Q Consensus 262 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~ 304 (343)
...|+.|......-+.-.|. +-.++...|+.++|..+|..+.
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW-~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYW-QADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHH-HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHccccccccHhHHHH-HHHHHHHcCCHHHHHHHHHHHh
Confidence 88888775532221222343 3445667888888888887764
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=52.49 E-value=41 Score=25.67 Aligned_cols=13 Identities=8% Similarity=-0.220 Sum_probs=6.4
Q ss_pred CCChHHHHHHHHH
Q 046547 113 LHPLPLALAILQR 125 (343)
Q Consensus 113 ~~~~~~a~~~~~~ 125 (343)
.|+++....+++.
T Consensus 16 ~g~~~~v~~ll~~ 28 (231)
T 3aji_A 16 SGKLDELKERILA 28 (231)
T ss_dssp HTCHHHHHHHHHH
T ss_pred hCCHHHHHHHHHh
Confidence 3555555554443
No 307
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=52.48 E-value=50 Score=22.12 Aligned_cols=85 Identities=8% Similarity=-0.008 Sum_probs=57.3
Q ss_pred CChhHHHHHHHHHHhcCCCCCchhHHHHHH--HHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHH
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVA--AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 297 (343)
-..++|..|-+-+... +. . -...|| ..+...|++++|..+.+.+ ..||...|-+|-. .+.|-.+++.
T Consensus 20 H~HqEA~tIAdwL~~~-~~--~--E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le 88 (115)
T 2uwj_G 20 HCHEEALCIAEWLERL-GQ--D--EAARLIRISSLANQGRYQEALAFAHGN----PWPALEPWFALCE--WHLGLGAALD 88 (115)
T ss_dssp TCHHHHHHHHHHHHHT-TC--H--HHHHHHHHHHHHHTTCHHHHHGGGTTC----CCGGGHHHHHHHH--HHTTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--H--HHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHH
Confidence 4578888888888764 33 2 233444 4567888898888776643 4688888766643 4678888888
Q ss_pred HHHHHHhHCCCCCCHHHHH
Q 046547 298 KTVMGMTERGFIPYIKVRQ 316 (343)
Q Consensus 298 ~~~~~m~~~g~~p~~~~~~ 316 (343)
..+.++..+| .|....|.
T Consensus 89 ~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 89 RRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHHHTCS-SHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8887787776 45554443
No 308
>3l6a_A Eukaryotic translation initiation factor 4 gamma; C-terminal region, MA2 domain, W2 domain, EIF4G2, EIF family translation; HET: MES PG4; 2.00A {Homo sapiens}
Probab=52.28 E-value=87 Score=26.56 Aligned_cols=79 Identities=11% Similarity=0.162 Sum_probs=49.0
Q ss_pred hhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCC----HhhHHHHHHHHhcCCC-hhHHHHHHHHHHhcCCCCCchhHHH
Q 046547 172 GTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPD----LESYSIVIGAMSTARK-TNDAVEMMKEMVLNMGLMPRQGMVI 246 (343)
Q Consensus 172 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~p~~~~~~ 246 (343)
.....+|.-|...|+.++|...++++.. |+ ...+..+..++-+... .+.+..++..+..+ ++-+......
T Consensus 13 k~~~~ii~EY~~~~D~~Ea~~~l~eL~~----p~~~~~~~v~~~i~~aLer~~~~re~~~~LL~~L~~~-~~ls~~~~~~ 87 (364)
T 3l6a_A 13 KLTETVVTEYLNSGNANEAVNGVREMRA----PKHFLPEMLSKVIILSLDRSDEDKEKASSLISLLKQE-GIATSDNFMQ 87 (364)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHTC----CGGGHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHT-TSSCHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHhCC----chhhHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHC-CCCCHHHHHH
Confidence 3457788899999999999999999864 32 3344444445444321 24466777777763 6655555555
Q ss_pred HHHHHHHhC
Q 046547 247 KVAAALRAN 255 (343)
Q Consensus 247 ~li~~~~~~ 255 (343)
.+...+...
T Consensus 88 Gf~~lle~l 96 (364)
T 3l6a_A 88 AFLNVLDQC 96 (364)
T ss_dssp HHHHHHHTH
T ss_pred HHHHHHhhC
Confidence 554444433
No 309
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=52.23 E-value=65 Score=26.82 Aligned_cols=14 Identities=7% Similarity=0.154 Sum_probs=6.2
Q ss_pred ccCcHHHHHHHHHH
Q 046547 183 AIDQLVEAAKVLKG 196 (343)
Q Consensus 183 ~~~~~~~a~~~~~~ 196 (343)
..|+.+-+..+++.
T Consensus 93 ~~g~~~~v~~Ll~~ 106 (364)
T 3ljn_A 93 MANKTDLVVALVEG 106 (364)
T ss_dssp HTTCHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHh
Confidence 44444444444443
No 310
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=51.68 E-value=63 Score=23.05 Aligned_cols=62 Identities=10% Similarity=0.019 Sum_probs=37.9
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 124 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
+.+.+.|++++..= ..++..+....+ .-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 11 ~~l~~~g~r~T~qR-~~Il~~L~~~~~-~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 11 ETLKETGVRITPQR-HAILEYLVNSMA-HPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHHHCSS-CCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHH-HHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 44667787776655 334444444443 346888888887776666666655555666666543
No 311
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=51.26 E-value=52 Score=22.04 Aligned_cols=85 Identities=11% Similarity=0.040 Sum_probs=57.6
Q ss_pred CChhHHHHHHHHHHhcCCCCCchhHHHHHH--HHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHH
Q 046547 220 RKTNDAVEMMKEMVLNMGLMPRQGMVIKVA--AALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAG 297 (343)
Q Consensus 220 ~~~~~a~~~~~~m~~~~~~~p~~~~~~~li--~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 297 (343)
-..++|..|-+-+... +. . -...|| ..+...|++++|..+.+.+ ..||...|-+|-. .+.|-.+++.
T Consensus 21 H~HqEA~tIAdwL~~~-~~--~--E~v~lIR~sSLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le 89 (116)
T 2p58_C 21 HYHEEANCIAEWLHLK-GE--E--EAVQLIRLSSLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALE 89 (116)
T ss_dssp TCHHHHHHHHHHHHHT-TC--H--HHHHHHHHHHHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHH
T ss_pred hHHHHHHHHHHHHHhC-Cc--H--HHHHHHHHHHHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHH
Confidence 4578888888888764 33 2 233444 4567888999988877654 3788888776654 4677778888
Q ss_pred HHHHHHhHCCCCCCHHHHH
Q 046547 298 KTVMGMTERGFIPYIKVRQ 316 (343)
Q Consensus 298 ~~~~~m~~~g~~p~~~~~~ 316 (343)
..+.++..+| .|....|.
T Consensus 90 ~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 90 SRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHHTTCC-CHHHHHHH
T ss_pred HHHHHHHhCC-CHHHHHHH
Confidence 8887787776 45544443
No 312
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=50.64 E-value=49 Score=25.82 Aligned_cols=70 Identities=4% Similarity=-0.039 Sum_probs=41.9
Q ss_pred CCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC-HhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCCC
Q 046547 131 CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD-CGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECVP 204 (343)
Q Consensus 131 ~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 204 (343)
.+-|..-...-|. |+.. .++...+|..|..+|+-.. +..|...-..+-..|++.+|.++|..-.+.+-.|
T Consensus 113 YknD~RyLklWl~-Ya~~---~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 113 YKDDVRYLRIWMQ-YVNY---IDEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp GTTCHHHHHHHHH-HHTT---CSCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred ccCCHHHHHHHHH-HHHc---cCCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 3345544444443 3332 2456677777777765443 3445566666667777777777777777666666
No 313
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=50.46 E-value=1.5e+02 Score=27.20 Aligned_cols=117 Identities=12% Similarity=-0.105 Sum_probs=70.8
Q ss_pred ChhHHHHHHHHHHhcCCCCCchh--HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQG--MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGK 298 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~ 298 (343)
+.+.|...+........+.+... .+..+...+...+...++...+....... ++.....-.+....+.|+++.|..
T Consensus 229 d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~ 306 (618)
T 1qsa_A 229 DAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNT 306 (618)
T ss_dssp CHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHH
Confidence 67889999988875433333221 12223323334443445566666544432 333333444445557899999999
Q ss_pred HHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 299 TVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 299 ~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
.|..|......-+...| -+..++...|+.++|..+|+.+.+
T Consensus 307 ~~~~l~~~~~~~~r~~Y-W~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 307 WLARLPMEAKEKDEWRY-WQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHSCTTGGGSHHHHH-HHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHccccccccHhHHH-HHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99988664322222333 355677889999999999988764
No 314
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=49.79 E-value=69 Score=23.00 Aligned_cols=63 Identities=10% Similarity=0.004 Sum_probs=38.1
Q ss_pred HHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 123 LQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 123 ~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
-+.+.+.|++++..= ..++..+....+ .-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 15 ~~~l~~~g~r~T~qR-~~IL~~l~~~~~-~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 15 RMSIKKNGLKNSKQR-EEVVSVLYRSGT-HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp HHHHHHCC--CHHHH-HHHHHHHHHCSS-CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHcCCCCCHHH-HHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 344667888776654 344455555443 446888888888776666666655556667666643
No 315
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=48.97 E-value=55 Score=23.96 Aligned_cols=59 Identities=12% Similarity=0.035 Sum_probs=31.3
Q ss_pred HHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC--CCCCCHHHHHHHHHHHhccCC
Q 046547 268 LERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER--GFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 268 m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--g~~p~~~~~~~li~~~~~~g~ 327 (343)
+.+.|++++. .=..+++.+...+..-.|.++++.+.+. +...+..|.-.-++.+...|-
T Consensus 24 L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Gl 84 (162)
T 4ets_A 24 LRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEM 84 (162)
T ss_dssp HHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCC
Confidence 3345665543 2234455555555666666666666655 444454444444455555553
No 316
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=48.35 E-value=1.3e+02 Score=25.86 Aligned_cols=32 Identities=9% Similarity=-0.072 Sum_probs=19.3
Q ss_pred chhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 241 RQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 241 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
+..--..++.+++...+.+...++++......
T Consensus 266 ~~~ek~~ll~aL~~s~d~~ll~~~L~~~l~~~ 297 (419)
T 3rjo_A 266 SSTEKSQIEFALCRTQNKEKLQWLLDESFKGD 297 (419)
T ss_dssp CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHhCCC
Confidence 33345566666666666666666666655544
No 317
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=48.17 E-value=1.2e+02 Score=25.14 Aligned_cols=138 Identities=12% Similarity=-0.080 Sum_probs=73.3
Q ss_pred cCCChHHHHH----HHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHH----HhcCC--ccCHhhHHHHHHHH
Q 046547 112 SLHPLPLALA----ILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM----KSIGY--HPDCGTCNYLVSSL 181 (343)
Q Consensus 112 ~~~~~~~a~~----~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m----~~~g~--~~~~~~~~~ll~~~ 181 (343)
+.|+...|-+ +++...+.++++|......++..+..-......-.++++.+ .+.|- .-++.....+-..|
T Consensus 65 ~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~ 144 (312)
T 2wpv_A 65 KAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKL 144 (312)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHH
T ss_pred HCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHH
Confidence 3466555444 45566677888888777777765433221111122333333 33322 23667788888888
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcC---CChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH
Q 046547 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTA---RKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
.+.|++.+|...|- .|-.-|...+..++.-+... |...+ +|...-.+++ -|.-.++.
T Consensus 145 ~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~w~~~~~~~~~~e---------------~dlf~~RaVL-~yL~l~n~ 204 (312)
T 2wpv_A 145 LEGDFVYEAERYFM----LGTHDSMIKYVDLLWDWLCQVDDIEDST---------------VAEFFSRLVF-NYLFISNI 204 (312)
T ss_dssp HHTTCHHHHHHHHH----TSCHHHHHHHHHHHHHHHHHTTCCCHHH---------------HHHHHHHHHH-HHHHTTBH
T ss_pred hhcCCHHHHHHHHH----hCCCccHHHHHHHHHHHHHhcCCCCcch---------------HHHHHHHHHH-HHHHhcCH
Confidence 88888888887664 22111344555555433332 22111 1222222333 34456778
Q ss_pred HHHHHHHHHHH
Q 046547 259 WKAVEMIEFLE 269 (343)
Q Consensus 259 ~~a~~~~~~m~ 269 (343)
..|..+++...
T Consensus 205 ~~A~~~~~~f~ 215 (312)
T 2wpv_A 205 SFAHESKDIFL 215 (312)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888877664
No 318
>3c1d_A Protein ORAA, regulatory protein RECX; tandem repeats, helix-turn-helix, cytoplasm, DNA damage, DNA repair, SOS response, DNA binding protein; 1.80A {Escherichia coli}
Probab=47.53 E-value=79 Score=23.00 Aligned_cols=53 Identities=11% Similarity=0.097 Sum_probs=27.8
Q ss_pred cHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc
Q 046547 186 QLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 241 (343)
..+.+..+++.+.+.|.--|..--...+....+.| -....+-.++..+ |+.++
T Consensus 45 ~~~~i~~vl~~l~~~g~ldD~rfA~~~v~~~~~~g--~G~~~I~~eL~~K-GI~~~ 97 (159)
T 3c1d_A 45 TAEDYERVIAWCHEHGYLDDSRFVARFIASRSRKG--YGPARIRQELNQK-GISRE 97 (159)
T ss_dssp CHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHTT--CCHHHHHHHHHHT-TCCHH
T ss_pred CHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHhCC--ccHHHHHHHHHHc-CCCHH
Confidence 34555566666666666544444445555554433 2344555555554 66543
No 319
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=47.04 E-value=70 Score=22.47 Aligned_cols=62 Identities=10% Similarity=0.037 Sum_probs=36.8
Q ss_pred HHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 125 RTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 125 ~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
.+++.|++++..= ..++..+....+..-.|.++++.+.+.+...+..|.---|..+.+.|-+
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 69 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLV 69 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcE
Confidence 4567777776655 3334444443302346888888888776666666655555666665543
No 320
>1wty_A Hypothetical protein TTHA0048; structural genomics, riken structural genomics/proteomics in RSGI, unknown function; 2.20A {Thermus thermophilus} SCOP: a.24.16.2 PDB: 2ywa_A
Probab=46.82 E-value=67 Score=21.99 Aligned_cols=110 Identities=10% Similarity=-0.012 Sum_probs=64.6
Q ss_pred ChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH-cCCCCchhhHHHHHHHHHhcccHhHHHHH
Q 046547 221 KTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER-KGCPIGFQGYEVVVEGCLECREYILAGKT 299 (343)
Q Consensus 221 ~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~~a~~~ 299 (343)
.+.+|+.-+++... . ++|......++..+-. -++.|+++.+...+ .|+ ++.++.-.+....+.|-.+.. +.
T Consensus 3 ~~~~al~~L~e~~~--~-~~~~~~~dg~i~~fe~--t~Elawk~~k~~l~~~g~--~~~s~rd~~r~a~~~glI~~~-~~ 74 (119)
T 1wty_A 3 SLARAVERLKAALE--R-PKDEFIRDSAIQRFEF--TFELAWKTLKTFLELQGL--EARSPRAAIRGAFQVGLLPED-PF 74 (119)
T ss_dssp CHHHHHHHHHHHHS--S-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTC--CCSSHHHHHHHHHHHTSSCCC-HH
T ss_pred HHHHHHHHHHHHHh--c-CCCHHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC--CCCCHHHHHHHHHHcCCCCcH-HH
Confidence 56778888888764 2 4676677777776544 25566666665553 466 467788888888888877666 56
Q ss_pred HHHHhHCCCCCCHHHHHHHHHH--Hhc-cCChhHHHHHHHHHH
Q 046547 300 VMGMTERGFIPYIKVRQKVVEG--LAG-VGEWKLATVVRQRFA 339 (343)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~li~~--~~~-~g~~~~a~~~~~~m~ 339 (343)
|..|.+.. ...+++|+..... |.. ....+...++.+.|.
T Consensus 75 w~~m~~~R-N~~vH~Y~~~~a~~v~~~i~~~l~~~~~l~~~i~ 116 (119)
T 1wty_A 75 WLEMLELR-NLTNHTYDEALAERIYAELPKALERFQELLRRLE 116 (119)
T ss_dssp HHHHHHHH-HHGGGTTSHHHHHHHHTTHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHh-hHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66665432 1234555443221 111 134455555555544
No 321
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=46.81 E-value=1.2e+02 Score=24.82 Aligned_cols=266 Identities=14% Similarity=0.031 Sum_probs=122.5
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCCCCCh------HHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHH
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQNPNP------FSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSY 108 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~ 108 (343)
+..+...++.|+.+.+..+++. |..|+. .|-+..-+..|..+.++-+++....... .+......+..
T Consensus 26 ~t~L~~Av~~g~~~~V~~LL~~----Gadvn~~~~~~g~TpLh~A~~~g~~~iv~~Ll~~ga~~~~--~~~~~~~~~~~- 98 (337)
T 4g8k_A 26 NHLLIKAVQNEDVDLVQQLLEG----GANVNFQEEEGGWTPLHNAVQMSREDIVELLLRHGADPVL--RKKNGATPFIL- 98 (337)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH----TCCTTCCCTTTCCCHHHHHHHTTCHHHHHHHHHTTCCTTC--CCTTCCCHHHH-
T ss_pred ChHHHHHHHcCCHHHHHHHHHC----CCCCCccCCCCCcCHHHHHHHcCCHHHHHHHHHcCCchhh--hccCCCchhHH-
Confidence 3455566677888776666653 443332 2335556677888888888876543222 22222222221
Q ss_pred HhhcCCChHHHHHHHHHHHhcCCCc---cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh-------------
Q 046547 109 TLQSLHPLPLALAILQRTLRSGCVP---VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG------------- 172 (343)
Q Consensus 109 ~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~------------- 172 (343)
....+....... ....+..+ |..-++.+..+ +..+ ..+ +.+.+.+.|..++..
T Consensus 99 -~~~~~~~~~~~~----~~~~~~~~~~~d~~g~t~l~~A-~~~~-~~~----~~~~ll~~ga~~~~~~~~~~~~~~~~~~ 167 (337)
T 4g8k_A 99 -AAIAGSVKLLKL----FLSKGADVNECDFYGFTAFMEA-AVYG-KVK----ALKFLYKRGANVNLRRKTKEDQERLRKG 167 (337)
T ss_dssp -HHHHTCHHHHHH----HHTTTCCTTCBCTTCCBHHHHH-HHTT-CHH----HHHHHHHTTCCTTCCCCCC-----CTTC
T ss_pred -HHhcccchhhHH----hhhccchhhhhccCCCCHHHHH-HHcC-cHH----HHHHHHHcCCCcchhhccccccccccCC
Confidence 122233333222 23333322 22223344433 3433 343 333344455443321
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCH---hhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchh---HHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDL---ESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQG---MVI 246 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~ 246 (343)
-.+.| ...+..|+.+-+..++++ .|..++. .-.+.+..+.... .......+.+.+.+ .|..++.. -.+
T Consensus 168 g~T~L-~~A~~~g~~~~v~~LL~~---~gad~n~~d~~g~t~l~~~~~~~-~~~~~~~i~~lLl~-~gad~n~~d~~g~t 241 (337)
T 4g8k_A 168 GATAL-MDAAEKGHVEVLKILLDE---MGADVNACDNMGRNALIHALLSS-DDSDVEAITHLLLD-HGADVNVRGERGKT 241 (337)
T ss_dssp SCCHH-HHHHHHTCHHHHHHHHHH---SCCCTTCCCTTSCCHHHHHHHHS-CTTTHHHHHHHHHH-TTCCTTCCCGGGCC
T ss_pred CCcHH-HHHHHCCCHHHHHHHHhc---cCCCcCccCCCCCcHHHHHHHHc-CcccHHHHHHHHHH-CCCCCCCcCCCCCC
Confidence 12233 344566777655544433 3443332 2223333333222 22222334444454 37665432 233
Q ss_pred HHHHHHHhCccHHHHHHHHHHHHHcCCCCch---hhHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHh
Q 046547 247 KVAAALRANREMWKAVEMIEFLERKGCPIGF---QGYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLA 323 (343)
Q Consensus 247 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~ 323 (343)
.|. ..+..|..+.+..++. ..|..++. .-.+.|..+ ++.|+.+-+ +.+.+.|..||..+ .+...+
T Consensus 242 ~L~-~a~~~~~~~~v~~Ll~---~~~~~vn~~d~~G~TpL~~A-~~~g~~~iv----~~Ll~~GAd~n~~~---~L~~A~ 309 (337)
T 4g8k_A 242 PLI-LAVEKKHLGLVQRLLE---QEHIEINDTDSDGKTALLLA-VELKLKKIA----ELLCKRGASTDCGD---LVMTAR 309 (337)
T ss_dssp HHH-HHHHTTCHHHHHHHHT---STTCCTTCBCTTSCBHHHHH-HHTTCHHHH----HHHHTTSCSSTTCC---HHHHHH
T ss_pred HHH-HHHHhhhhHHHHHHHH---hcCCcccCcCCCCCCHHHHH-HHcCCHHHH----HHHHHCCCCCCCCC---HHHHHH
Confidence 444 4466777776655543 22443332 222344433 456665543 44456787776544 334445
Q ss_pred ccCChhHHHHHHH
Q 046547 324 GVGEWKLATVVRQ 336 (343)
Q Consensus 324 ~~g~~~~a~~~~~ 336 (343)
+.|+.+-+.-+++
T Consensus 310 ~~~~~~iv~~Ll~ 322 (337)
T 4g8k_A 310 RNYDHSLVKVLLS 322 (337)
T ss_dssp HTTCHHHHHHHHH
T ss_pred HcCCHHHHHHHHH
Confidence 6677665554443
No 322
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=46.65 E-value=65 Score=22.98 Aligned_cols=60 Identities=18% Similarity=0.083 Sum_probs=36.0
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc
Q 046547 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ 186 (343)
Q Consensus 124 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~ 186 (343)
+.+++.|++++..= ..++..+...+ .-.|.++++.+.+.+...+..|.-.-|..+...|-
T Consensus 8 ~~L~~~g~r~T~qR-~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 8 SDLRQRGYRLTPQR-QLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHHHTTTCCCCHHH-HHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 34566777776654 33344444433 33688888888777666666655555566666554
No 323
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=46.49 E-value=87 Score=23.22 Aligned_cols=27 Identities=4% Similarity=-0.203 Sum_probs=12.7
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDL 206 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~ 206 (343)
..+..|..+.-.++.+-+.+.|..++.
T Consensus 44 ~A~~~~~~~~~~~iv~~Ll~~Gadvn~ 70 (186)
T 3t8k_A 44 DVLRNNNDEARYKISMFLINKGADIKS 70 (186)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCCSSC
T ss_pred HHHHcCCcchHHHHHHHHHHCCCCCCC
Confidence 333444444444455555555554443
No 324
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=46.46 E-value=96 Score=23.70 Aligned_cols=35 Identities=11% Similarity=0.074 Sum_probs=16.0
Q ss_pred CchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 150 CQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 150 ~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
.+.+.|+-++-+|.+.| .|.-..-..++.+.-..|
T Consensus 28 SDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 28 SDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp TCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTG
T ss_pred CCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhcc
Confidence 34555555555555555 444333333333433333
No 325
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=45.90 E-value=65 Score=21.57 Aligned_cols=48 Identities=17% Similarity=0.068 Sum_probs=21.7
Q ss_pred HHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHH
Q 046547 180 SLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMV 233 (343)
Q Consensus 180 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 233 (343)
.+.+.|++++|..+.+.+ +.||...+-+| +-.+.|..+++...+..+.
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~AL--ce~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFAL--CEWHLGLGAALDRRLAGLG 95 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHH--HHHHTTCHHHHHHHHHHHH
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHH--HHHhcccHHHHHHHHHHHH
Confidence 344455555554433322 24555544333 2234455555555554444
No 326
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=45.56 E-value=1e+02 Score=23.85 Aligned_cols=49 Identities=12% Similarity=0.070 Sum_probs=21.6
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHhhhCCCC
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGMSSAECV 203 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 203 (343)
.+..+++.+.+.|.--|..--...+....+.+.+ ....+-.++.+.|+.
T Consensus 94 ~i~~vl~~L~~~g~ldD~rfA~~~v~~~~~~~~~-G~~~I~~eL~~KGI~ 142 (221)
T 3d5l_A 94 FVEPILKKLRGQQLIDDHAYAASYVRTMINTDLK-GPGIIRQHLRQKGIG 142 (221)
T ss_dssp HHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhccc-cHHHHHHHHHHcCCC
Confidence 3444555555555554444444444444331111 233344455555554
No 327
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=45.52 E-value=99 Score=23.57 Aligned_cols=94 Identities=13% Similarity=0.037 Sum_probs=0.0
Q ss_pred HHHHHHhc--cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc-----HHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 141 LSSAWLER--RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ-----LVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 141 li~~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
+|+++.+. |.+.+.|+-++-+|.+.|-.|.-..-..++.+.-..|. +.-|...++....-|.+--.......+
T Consensus 10 ~ISAf~KSiRGSDpDAAly~LaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 89 (201)
T 3bge_A 10 LISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCFTRVGAYEGERAIAQAI 89 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTTHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH
Q ss_pred HHHhcCCChhHHHHHHHHHHh
Q 046547 214 GAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~ 234 (343)
--++.+-+-..+...++...+
T Consensus 90 iyLA~aPKSNs~y~A~~~A~~ 110 (201)
T 3bge_A 90 IYLSVAPKSNAVYTAFNTAKQ 110 (201)
T ss_dssp HHHHHSCCCCHHHHHHHHHHH
T ss_pred HHHHcCCccHHHHHHHHHHHH
No 328
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=45.24 E-value=54 Score=27.49 Aligned_cols=24 Identities=4% Similarity=-0.281 Sum_probs=14.7
Q ss_pred hHHHHHHHHHhcccHhHHHHHHHH
Q 046547 279 GYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 279 ~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
....++..+.+....+.+.++|.+
T Consensus 143 fl~~vl~~l~~~~g~~~l~~~~~~ 166 (339)
T 1ug3_A 143 LLLEILGLLCKSMGPKKVGTLWRE 166 (339)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHH
Confidence 344455566666666777777764
No 329
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=45.18 E-value=36 Score=24.06 Aligned_cols=52 Identities=17% Similarity=0.006 Sum_probs=24.1
Q ss_pred HHHHHhCccCcchHHHHHHHch-hcC-CCCChHHHhhhhhhcccchHHHHHHHHh
Q 046547 37 TVRAAVDAKDYQQIPELLGSFE-EAC-QNPNPFSFLSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~-~~~-~~p~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
.+...++.|+.+.+..+++... ... ...+-.|.+.. +..+..+.+..+++..
T Consensus 5 ~L~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~-~~~~~~~~v~~Ll~~g 58 (156)
T 1bd8_A 5 RLSGAAARGDVQEVRRLLHRELVHPDALNRFGKTALQV-MMFGSTAIALELLKQG 58 (156)
T ss_dssp HHHHHHHHTCHHHHHHHHHTTCCCTTCCCTTSCCHHHH-SCTTCHHHHHHHHHTT
T ss_pred HHHHHHHhCCHHHHHHHHHhhCcCccccCCCCCcHHHH-HHcCCHHHHHHHHHCC
Confidence 3444555566666666665510 100 01122233444 5556666666655543
No 330
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=45.05 E-value=79 Score=22.68 Aligned_cols=63 Identities=11% Similarity=0.094 Sum_probs=37.1
Q ss_pred HHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcH
Q 046547 124 QRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 124 ~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
+.+.+.|++++..=. .++..+....+..-.|.++++.+.+.+...+..|.---|..+...|-+
T Consensus 6 ~~l~~~g~r~T~qR~-~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 6 QALKDAGLKVTLPRL-KILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp HHHHHTTCCCCHHHH-HHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHcCCCCCHHHH-HHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 346677777766553 333444333302346888888887776666666655555666666643
No 331
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=44.97 E-value=23 Score=25.14 Aligned_cols=13 Identities=15% Similarity=0.276 Sum_probs=5.8
Q ss_pred hccCChhHHHHHH
Q 046547 323 AGVGEWKLATVVR 335 (343)
Q Consensus 323 ~~~g~~~~a~~~~ 335 (343)
+..|+.+-+..++
T Consensus 141 ~~~~~~~~v~~Ll 153 (156)
T 1bd8_A 141 LQRGAQDLVDILQ 153 (156)
T ss_dssp HHSCCHHHHHHHH
T ss_pred HHcCcHHHHHHHH
Confidence 3445544444433
No 332
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=44.69 E-value=69 Score=21.50 Aligned_cols=12 Identities=8% Similarity=-0.028 Sum_probs=5.0
Q ss_pred HccCcHHHHHHH
Q 046547 182 CAIDQLVEAAKV 193 (343)
Q Consensus 182 ~~~~~~~~a~~~ 193 (343)
.+.|++++|..+
T Consensus 51 mNrG~Yq~Al~l 62 (116)
T 2p58_C 51 MNRGDYASALQQ 62 (116)
T ss_dssp HHTTCHHHHHHH
T ss_pred HcchhHHHHHHh
Confidence 334444444433
No 333
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=41.91 E-value=1e+02 Score=22.63 Aligned_cols=51 Identities=6% Similarity=-0.221 Sum_probs=28.0
Q ss_pred hcccHhHHHHHHHHHhHCCCCC--CHHHHHHHHH------HHhccCChhHHHHHHHHHH
Q 046547 289 ECREYILAGKTVMGMTERGFIP--YIKVRQKVVE------GLAGVGEWKLATVVRQRFA 339 (343)
Q Consensus 289 ~~g~~~~a~~~~~~m~~~g~~p--~~~~~~~li~------~~~~~g~~~~a~~~~~~m~ 339 (343)
..|++-+|.++|++.-...-.| ....|..||+ ...+.|++..|..++.+-.
T Consensus 44 n~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 44 NSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred hCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 3466666766666655443334 3444555555 1223566666666666554
No 334
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=41.51 E-value=96 Score=22.26 Aligned_cols=22 Identities=14% Similarity=-0.054 Sum_probs=11.7
Q ss_pred HHHHHhCccHHHHHHHHHHHHH
Q 046547 249 AAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 249 i~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.-++.+.|++++|.+..+.+.+
T Consensus 84 Avg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 84 TIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhhhHHHHHHHHHHHHh
Confidence 3345555555555555555554
No 335
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=41.02 E-value=1.3e+02 Score=24.95 Aligned_cols=45 Identities=7% Similarity=-0.135 Sum_probs=22.1
Q ss_pred HhCccHHHHHHHHHHHHHcCCCCchh---hHHHHHHHHHhcccHhHHHHHHHH
Q 046547 253 RANREMWKAVEMIEFLERKGCPIGFQ---GYEVVVEGCLECREYILAGKTVMG 302 (343)
Q Consensus 253 ~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~~~~g~~~~a~~~~~~ 302 (343)
+..|+.+-+ +.+.+.|..++.. -.+. +...+..|+.+-+..+++.
T Consensus 219 ~~~g~~~~v----~~Ll~~gad~~~~d~~g~tp-L~~A~~~g~~~~v~~Ll~~ 266 (364)
T 3ljn_A 219 ILINWEDVA----MRFVEMGIDVNMEDNEHTVP-LYLSVRAAMVLLTKELLQK 266 (364)
T ss_dssp HTTTCHHHH----HHHHTTTCCTTCCCTTSCCH-HHHHHHTCCHHHHHHHHHH
T ss_pred HHcCCHHHH----HHHHHcCCCCCCCCCCCCCH-HHHHHHhChHHHHHHHHHc
Confidence 455655433 3344455554432 2223 3334456776666666654
No 336
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=40.62 E-value=1.2e+02 Score=25.93 Aligned_cols=79 Identities=14% Similarity=0.082 Sum_probs=43.6
Q ss_pred HHHHHhCccCcchHHHHHHHchhcCCCCChH-----HHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhh
Q 046547 37 TVRAAVDAKDYQQIPELLGSFEEACQNPNPF-----SFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQ 111 (343)
Q Consensus 37 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~ 111 (343)
.+...+..|+.+.+..+++ .|..|+.. +-+..-+..|..+.++.+++....... .+....+.|. ..+
T Consensus 17 ~L~~Aa~~g~~~~v~~Ll~----~g~~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll~~g~~~~~--~~~~g~t~L~--~A~ 88 (437)
T 1n11_A 17 PLHVASFMGHLPIVKNLLQ----RGASPNVSNVKVETPLHMAARAGHTEVAKYLLQNKAKVNA--KAKDDQTPLH--CAA 88 (437)
T ss_dssp HHHHHHHHTCHHHHHHHHH----TTCCSCCSSSCCCCHHHHHHHHTCHHHHHHHHHHTCCSSC--CCTTSCCHHH--HHH
T ss_pred HHHHHHHCCCHHHHHHHHH----cCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHhCCCCCCC--CCCCCCCHHH--HHH
Confidence 4555666777765555554 34444432 346666778888888888887544322 2223333444 233
Q ss_pred cCCChHHHHHHH
Q 046547 112 SLHPLPLALAIL 123 (343)
Q Consensus 112 ~~~~~~~a~~~~ 123 (343)
..|+.+-+.-++
T Consensus 89 ~~g~~~~v~~Ll 100 (437)
T 1n11_A 89 RIGHTNMVKLLL 100 (437)
T ss_dssp HHTCHHHHHHHH
T ss_pred HCCCHHHHHHHH
Confidence 447655444333
No 337
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=39.90 E-value=1.1e+02 Score=22.36 Aligned_cols=70 Identities=11% Similarity=0.099 Sum_probs=43.7
Q ss_pred hHHHHHHHHH-HHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhc--CCccCHhhHHHHHHHHHccCcH
Q 046547 116 LPLALAILQR-TLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSI--GYHPDCGTCNYLVSSLCAIDQL 187 (343)
Q Consensus 116 ~~~a~~~~~~-m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~--g~~~~~~~~~~ll~~~~~~~~~ 187 (343)
.+.+++-+.+ +++.|++++..= ..++..+....+ .-.|.++++.+.+. +...+..|--.-|+.+...|-+
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~qR-~~IL~~L~~~~~-h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTKQR-EVLLKTLYHSDT-HYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCHHH-HHHHHHHHSCCS-CBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHhCCC-CCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 3444544444 567788876654 445555555543 45788899888877 6666666655555777777643
No 338
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.97 E-value=46 Score=27.88 Aligned_cols=67 Identities=7% Similarity=0.179 Sum_probs=40.5
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC-ChhHHHHHHHHHHhcCCCCCc
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR-KTNDAVEMMKEMVLNMGLMPR 241 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~p~ 241 (343)
-...++.-|...|+.++|...++++...+.. ...++..+..++-+.. ..+.+..++..+..+ |+-+.
T Consensus 13 ~~~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~-~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~-~~is~ 80 (339)
T 1ug3_A 13 KSKAIIEEYLHLNDMKEAVQCVQELASPSLL-FIFVRHGVESTLERSAIAREHMGQLLHQLLCA-GHLST 80 (339)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHTTCCGGGH-HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHT-TSSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCcccH-HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHC-CCCCH
Confidence 3567888899999999999999888632221 1233444444443322 234566777777753 54443
No 339
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=38.36 E-value=1.7e+02 Score=24.27 Aligned_cols=69 Identities=6% Similarity=0.030 Sum_probs=43.2
Q ss_pred ccHHHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH-HHHHHHHHHHhc
Q 046547 256 REMWKAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGFIPYI-KVRQKVVEGLAG 324 (343)
Q Consensus 256 ~~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~-~~~~~li~~~~~ 324 (343)
.+..+..++-.-+..-.+.|.-. +...-|....+.+++..|..+-+++.+.+-.|.. ..-..++..+-+
T Consensus 184 ~~~kR~lELAAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~~a~qArkil~~ce~ 255 (325)
T 3mv2_A 184 GNTVRMLELAAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGPRAEQARKIKNKADS 255 (325)
T ss_dssp TCHHHHHHHHHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSHHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhc
Confidence 34556666666666666666433 4445566688999999999999999887744332 223344444443
No 340
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=38.20 E-value=27 Score=20.65 Aligned_cols=15 Identities=7% Similarity=0.239 Sum_probs=7.7
Q ss_pred cHHHHHHHHHHhhhC
Q 046547 186 QLVEAAKVLKGMSSA 200 (343)
Q Consensus 186 ~~~~a~~~~~~m~~~ 200 (343)
+++.|...|.+++..
T Consensus 35 d~~~A~~~F~~l~~~ 49 (59)
T 1oai_A 35 DYTRSAQAFTHLKAK 49 (59)
T ss_dssp CHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHc
Confidence 455555555555443
No 341
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=37.72 E-value=30 Score=20.47 Aligned_cols=33 Identities=12% Similarity=-0.144 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHHhcCCCccHHHHHHHHHHH-Hhc
Q 046547 116 LPLALAILQRTLRSGCVPVPQIRLLLSSAW-LER 148 (343)
Q Consensus 116 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~ 148 (343)
.++|.+.|.+|++..-.++..||.-.|..+ ++.
T Consensus 2 ~eEae~aF~~lL~~~~V~s~wsweqamr~i~i~D 35 (59)
T 2b7e_A 2 AMEAEKEFITMLKENQVDSTWSFSRIISELGTRD 35 (59)
T ss_dssp TTHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHcCCCCCCcHHHHHHHhccCC
Confidence 367778888877555455667788888776 443
No 342
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=37.72 E-value=85 Score=20.57 Aligned_cols=13 Identities=8% Similarity=0.181 Sum_probs=5.3
Q ss_pred HHHHHHHHHHhhh
Q 046547 187 LVEAAKVLKGMSS 199 (343)
Q Consensus 187 ~~~a~~~~~~m~~ 199 (343)
.+.|.++++.+..
T Consensus 53 ~~~ar~Lld~L~~ 65 (97)
T 3ygs_P 53 RDQARQLIIDLET 65 (97)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444333
No 343
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=37.56 E-value=3e+02 Score=26.88 Aligned_cols=270 Identities=9% Similarity=0.007 Sum_probs=141.1
Q ss_pred HhCccCcchHHHHHHHchhcCC-------CCChH---HH--hhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHH--
Q 046547 41 AVDAKDYQQIPELLGSFEEACQ-------NPNPF---SF--LSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLL-- 106 (343)
Q Consensus 41 ~~~~~~~~~a~~~~~~m~~~~~-------~p~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li-- 106 (343)
+...|..+++.+++.......- .+... .+ -.++...++.+.++.+...+..- . +...+.+.+
T Consensus 421 li~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~eev~e~L~~~L~dd-~---~~~~~~AalAL 496 (963)
T 4ady_A 421 LIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSANIEVYEALKEVLYND-S---ATSGEAAALGM 496 (963)
T ss_dssp HHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHTC-C---HHHHHHHHHHH
T ss_pred HhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhcC-C---HHHHHHHHHHH
Confidence 3344554567776665443221 12232 22 22333445556666666665421 1 122222222
Q ss_pred HHHhhcCCChHHHHHHHHHHHhcCCCccHHHHHHHHH--HHHhccCchhHHHHHHHHHHhcCCccCHhhHH---HHHHHH
Q 046547 107 SYTLQSLHPLPLALAILQRTLRSGCVPVPQIRLLLSS--AWLERRCQSQSVADILLEMKSIGYHPDCGTCN---YLVSSL 181 (343)
Q Consensus 107 ~~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~--~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~---~ll~~~ 181 (343)
...+...|+-+....++..+.+.. .+ .....+.. ++...| +.+.+..+++.+... ..|.. -|. .+.-+|
T Consensus 497 Gli~vGTgn~~ai~~LL~~~~e~~--~e-~vrR~aalgLGll~~g-~~e~~~~li~~L~~~-~dp~v-Rygaa~alglAy 570 (963)
T 4ady_A 497 GLCMLGTGKPEAIHDMFTYSQETQ--HG-NITRGLAVGLALINYG-RQELADDLITKMLAS-DESLL-RYGGAFTIALAY 570 (963)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHCS--CH-HHHHHHHHHHHHHTTT-CGGGGHHHHHHHHHC-SCHHH-HHHHHHHHHHHT
T ss_pred hhhhcccCCHHHHHHHHHHHhccC--cH-HHHHHHHHHHHhhhCC-ChHHHHHHHHHHHhC-CCHHH-HHHHHHHHHHHh
Confidence 123445677777778887776532 22 22222222 333444 466777788887653 23322 233 334467
Q ss_pred HccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccH-HH
Q 046547 182 CAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREM-WK 260 (343)
Q Consensus 182 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~-~~ 260 (343)
+..|+.....+++..+.+.. ..+..-...+--++...|+.+.+.++++.+.+ ...|...--.++.-+....|.. .+
T Consensus 571 aGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~--~~d~~VR~gAalALGli~aGn~~~~ 647 (963)
T 4ady_A 571 AGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSK--SHNAHVRCGTAFALGIACAGKGLQS 647 (963)
T ss_dssp TTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGG--CSCHHHHHHHHHHHHHHTSSSCCHH
T ss_pred cCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhccCCCcHH
Confidence 77889888888888887642 23444444555566667888888888887774 3356665555555555555544 57
Q ss_pred HHHHHHHHHHcCCCCchhhHHHHHHH--HHhcc-------cHhHHHHHHHHHhHC-CCCCCHHHHHHHHHHHhccC
Q 046547 261 AVEMIEFLERKGCPIGFQGYEVVVEG--CLECR-------EYILAGKTVMGMTER-GFIPYIKVRQKVVEGLAGVG 326 (343)
Q Consensus 261 a~~~~~~m~~~g~~p~~~~~~~li~~--~~~~g-------~~~~a~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g 326 (343)
+.+++..+... +|..+-..-+.+ ..-.| ++...++.+...... .-.|+...-..+..+....|
T Consensus 648 aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~dk~~d~~~~fga~iAqGll~aG 720 (963)
T 4ady_A 648 AIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVITNKHQEGLAKFGACVAQGIMNAG 720 (963)
T ss_dssp HHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHTTG
T ss_pred HHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhcC
Confidence 78888888643 344433222223 23232 233334433333332 22344454555555665555
No 344
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=37.51 E-value=1.2e+02 Score=22.92 Aligned_cols=51 Identities=6% Similarity=0.021 Sum_probs=22.9
Q ss_pred HHHHhCccCcchHHHHHHHchhc--CCCCChHHHhhhhhhcccchHHHHHHHH
Q 046547 38 VRAAVDAKDYQQIPELLGSFEEA--CQNPNPFSFLSNFPQNHRIKVIDEMLES 88 (343)
Q Consensus 38 i~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~~~~~~~~~~~~~~~~~~ 88 (343)
+...++.|+.+.+..+++.-... ....+-.+.+...+..+..+.++.+++.
T Consensus 10 l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ 62 (231)
T 3aji_A 10 ICNLAYSGKLDELKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQL 62 (231)
T ss_dssp HHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 44445556666555555543221 1112222334444455555555555544
No 345
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.49 E-value=69 Score=24.98 Aligned_cols=57 Identities=11% Similarity=0.004 Sum_probs=30.9
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhh-------HHHHHHHHH--ccCcHHHHHHHHHHh
Q 046547 139 LLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGT-------CNYLVSSLC--AIDQLVEAAKVLKGM 197 (343)
Q Consensus 139 ~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~m 197 (343)
+.|..+ ++.| +.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 7 ~~L~~A-~~~g-~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 7 PILFDI-VSRG-SPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHHH-HHHT-CGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHHHH-HHhC-CHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 344444 4444 56767777777766666655332 344444432 456666555555543
No 346
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=37.46 E-value=61 Score=19.10 Aligned_cols=23 Identities=13% Similarity=-0.054 Sum_probs=16.0
Q ss_pred cCCChHHHHHHHHHHHhcCCCcc
Q 046547 112 SLHPLPLALAILQRTLRSGCVPV 134 (343)
Q Consensus 112 ~~~~~~~a~~~~~~m~~~~~~p~ 134 (343)
..|+++.|...+-+|...+..|+
T Consensus 35 ~~gdvd~aI~~LL~m~~~~~~~~ 57 (59)
T 1wgl_A 35 QRGNKDAAINSLLQMGEEPSGPS 57 (59)
T ss_dssp TTTCHHHHHHHHHHSSCCCCSCC
T ss_pred cCCCHHHHHHHHHcCcCCCCCCC
Confidence 45677777777777776666665
No 347
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=36.33 E-value=1.5e+02 Score=22.89 Aligned_cols=93 Identities=15% Similarity=0.109 Sum_probs=0.0
Q ss_pred HHHHHHhc--cCchhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCc-----HHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 141 LSSAWLER--RCQSQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQ-----LVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 141 li~~~~~~--~~~~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
+|+++.+. |.+.+.|+-++-+|.+.|-.|.-..-..++.+.-..|. +.-|...++....-|.+--.......+
T Consensus 38 ~ISAf~KSiRGSDpDAALywLaRMl~~GEDp~~IaRRLvi~AsEDIGlAdP~Al~~a~aa~~a~~~iG~PE~~i~Laqav 117 (213)
T 3ctd_A 38 VISAFIKSIRGSDPDATLYWLANMVEAGEDPNFIFRRLLISACEDIGLADPNAIVVVQSCCDAFDRVGFPEGLFFLSQAS 117 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGSTTHHHHHHHHHHHHHHHCTTTTHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q ss_pred HHHhcCCChhHHHHHHHHHHh
Q 046547 214 GAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~ 234 (343)
-.++.+-+-..+ ..++...+
T Consensus 118 iyLA~APKSNs~-~A~~~A~~ 137 (213)
T 3ctd_A 118 LYLAISPKSNST-KSIFKAME 137 (213)
T ss_dssp HHHHHSCCCCGG-GHHHHHHH
T ss_pred HHHHcCCccHHH-HHHHHHHH
No 348
>2qx5_A Nucleoporin NIC96; mRNA transport, nuclear pore complex, nucleus, protein transport, translocation, transport, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2rfo_A
Probab=35.87 E-value=2.7e+02 Score=25.85 Aligned_cols=81 Identities=11% Similarity=0.005 Sum_probs=45.7
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHh-
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRA- 254 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~- 254 (343)
.....+.-.|+++.|.+.+-.. ...+.+.+.+.+..|+-.+- ...++.. . .+ .| ..-+..||..|++
T Consensus 299 lYf~vLlLtgqFE~AI~~L~~~----~~vdAVH~AIaL~~~gLL~~---~~~lls~-~--~~-~~-~lN~arLI~~Yt~~ 366 (661)
T 2qx5_A 299 YYLQTLLLSGLYGLAIDYTYTF----SEMDAVHLAIGLASLKLFKI---DSSTRLT-K--KP-KR-DIRFANILANYTKS 366 (661)
T ss_dssp CHHHHHHHTTCHHHHHHHHHTT----CHHHHHHHHHHHHHTTC-------------------------CHHHHHHHHHTT
T ss_pred HHHHHHHHHhhHHHHHHHHHhc----CchhHHHHHHHHHHcCCccC---CCccccc-C--CC-cc-cccHHHHHHHHHHH
Confidence 4556677789999999887755 34667777777766554432 1111110 0 01 12 2337778877775
Q ss_pred --CccHHHHHHHHHHH
Q 046547 255 --NREMWKAVEMIEFL 268 (343)
Q Consensus 255 --~~~~~~a~~~~~~m 268 (343)
..++.+|.+.|--+
T Consensus 367 F~~td~~~Al~Y~~li 382 (661)
T 2qx5_A 367 FRYSDPRVAVEYLVLI 382 (661)
T ss_dssp TTTTCHHHHHHHHHGG
T ss_pred hhcCCHHHHHHHHHHH
Confidence 46788888877765
No 349
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=35.75 E-value=52 Score=22.97 Aligned_cols=45 Identities=11% Similarity=0.042 Sum_probs=22.8
Q ss_pred HHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 283 VVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 283 li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
+++.+...+..-.|.++++.+.+.+...+..|.-..++.+...|-
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 60 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGL 60 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCC
Confidence 344444444455566666666555444444444444455555543
No 350
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=35.36 E-value=1.4e+02 Score=22.49 Aligned_cols=24 Identities=4% Similarity=-0.278 Sum_probs=12.4
Q ss_pred HHHHhcccHhHHHHHHHHHhHCCC
Q 046547 285 EGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 285 ~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
...+..|+.+-+..+++.+.+.|.
T Consensus 159 ~~A~~~~~~~~~~~i~~~Ll~~g~ 182 (232)
T 2rfa_A 159 HILILQPNKTFACQMYNLLLSYDG 182 (232)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCChHHHHHHHHHHHhcCC
Confidence 334455555555555555555543
No 351
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.09 E-value=48 Score=23.49 Aligned_cols=46 Identities=20% Similarity=0.183 Sum_probs=24.3
Q ss_pred HHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCC
Q 046547 282 VVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGE 327 (343)
Q Consensus 282 ~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~ 327 (343)
.+++.+...+..-.|.++++.+.+.+...+..|.-.-++.+...|-
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Gl 63 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGE 63 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCC
Confidence 3444444545555566666666655544455544444455555553
No 352
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=33.52 E-value=1.7e+02 Score=22.73 Aligned_cols=49 Identities=12% Similarity=0.085 Sum_probs=29.2
Q ss_pred hhHHHHHHHHHHhcCCCCCch-hHH-----HHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 222 TNDAVEMMKEMVLNMGLMPRQ-GMV-----IKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p~~-~~~-----~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
.+.|+.+|+.+.....+..+. ... -..+..|.+.|.+++|.+++++...
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~ 142 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMS 142 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhc
Confidence 567888888888652222211 111 2334456777778888887777655
No 353
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=33.01 E-value=73 Score=25.13 Aligned_cols=62 Identities=15% Similarity=-0.032 Sum_probs=33.0
Q ss_pred ChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCc-------cHHHHHHHHHHHHh-ccCchhHHHHHHHH
Q 046547 98 PKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVP-------VPQIRLLLSSAWLE-RRCQSQSVADILLE 161 (343)
Q Consensus 98 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p-------~~~~~~~li~~~~~-~~~~~~~a~~~~~~ 161 (343)
|..-.+.|.. .+..|+.+.+..+++...+.+... |....+.|..+... ..+..+-+..+++.
T Consensus 10 d~~g~t~L~~--A~~~g~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~ 79 (273)
T 2pnn_A 10 RLYDRRSIFD--AVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDV 79 (273)
T ss_dssp -CCCHHHHHH--HHHTTCSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHH
T ss_pred CcccchHHHH--HHHcCCHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHh
Confidence 4445555653 345588888888888776665433 33344555554321 12345544444444
No 354
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=32.75 E-value=2.1e+02 Score=23.56 Aligned_cols=67 Identities=7% Similarity=0.066 Sum_probs=36.6
Q ss_pred HHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc--cHHHHHHHHHHHHHcCCCCch
Q 046547 209 YSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR--EMWKAVEMIEFLERKGCPIGF 277 (343)
Q Consensus 209 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~ 277 (343)
.+.++.-|...|+.++|.+.++++.. .... ...++.++..++-+.+ ..+...+++..+.+.|+-+..
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~-p~f~-~e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~~ls~~ 237 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEV-PHFH-HELVYEAIIMVLESTGESTFKMILDLLKSLWKSSTITVD 237 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCC-GGGH-HHHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHCSSCHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCC-Ccch-HHHHHHHHHHHHccCChHHHHHHHHHHHHHHHCCCCCHH
Confidence 45666667777777777777777652 1111 1233444444444432 245566677776665554433
No 355
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=32.63 E-value=95 Score=24.08 Aligned_cols=18 Identities=0% Similarity=-0.084 Sum_probs=9.2
Q ss_pred HHHHHhcccHhHHHHHHH
Q 046547 284 VEGCLECREYILAGKTVM 301 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~ 301 (343)
+...+..|+.+-+..+++
T Consensus 140 L~~A~~~~~~~~v~~Ll~ 157 (256)
T 2etb_A 140 LSLAACTKQWDVVTYLLE 157 (256)
T ss_dssp HHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHh
Confidence 334445677655444443
No 356
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=32.62 E-value=3.9e+02 Score=27.32 Aligned_cols=79 Identities=10% Similarity=-0.031 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHHcCCCCchh-hHHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHHHHHH
Q 046547 258 MWKAVEMIEFLERKGCPIGFQ-GYEVVVEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 258 ~~~a~~~~~~m~~~g~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~ 336 (343)
.++..+.|.++.+. +.++.. .....+.--...|++-.|++++.++.+.. |+...|..++..+...| |+....+.+
T Consensus 1265 ~~~~~~~~~el~k~-~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~k--~~~~~~~~~~~~~~~l~-w~h~~~~~~ 1340 (1354)
T 3lxu_X 1265 LAEINELYTEIIKF-VDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEEK--RTRDHFVELAAINGALG-HEHIRTVIN 1340 (1354)
T ss_dssp HHHHHHHHHHHTTS-SCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHT--CCHHHHHHHHHHHHHHS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHhh-cccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhcc--ccHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence 34455666666553 333322 22222223336888999999999988765 67888888877666555 776666666
Q ss_pred HHHh
Q 046547 337 RFAE 340 (343)
Q Consensus 337 ~m~~ 340 (343)
++.-
T Consensus 1341 ~~~~ 1344 (1354)
T 3lxu_X 1341 RMMI 1344 (1354)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 6543
No 357
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=32.50 E-value=79 Score=21.79 Aligned_cols=44 Identities=9% Similarity=-0.066 Sum_probs=29.4
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHhcccHhHHHHHHHHHhHC
Q 046547 263 EMIEFLERKGCPIGFQGYEVVVEGCLECREYILAGKTVMGMTER 306 (343)
Q Consensus 263 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 306 (343)
-+|+.+.+..+.|+...--.-|..+...++++.|.++...+...
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 35555556667665544444455577888999999998887654
No 358
>3e3v_A Regulatory protein RECX; PSI-II, NYSGXRC, structural genomics, protein initiative; 2.04A {Lactobacillus salivarius}
Probab=32.19 E-value=1.5e+02 Score=21.91 Aligned_cols=53 Identities=6% Similarity=0.061 Sum_probs=26.3
Q ss_pred HHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc
Q 046547 187 LVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR 241 (343)
Q Consensus 187 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~ 241 (343)
.+.+..+++.+.+.|.--|..--...+....+.|.+ ....+-.++..+ |+.++
T Consensus 49 ~~~ie~vl~~L~~~g~ldD~rfA~~~vr~~~~~~~~-G~~~I~~eL~~K-GI~~~ 101 (177)
T 3e3v_A 49 EDYISEIINKLIDLDLINDKNYAESYVRTMMNTSDK-GPKVIKLNLSKK-GIDDN 101 (177)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHCCC-CHHHHHHHHHTT-TCCHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcccc-cHHHHHHHHHHc-CCCHH
Confidence 445556666666666554444444445554443322 224445555554 65443
No 359
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=30.76 E-value=91 Score=18.83 Aligned_cols=42 Identities=7% Similarity=0.118 Sum_probs=20.4
Q ss_pred HHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHH
Q 046547 245 VIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGC 287 (343)
Q Consensus 245 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~ 287 (343)
++.+++.++...-+++++..+.+..+.|. .+..+|---++.+
T Consensus 5 ~~Qll~l~Aed~AieDaiy~L~~aL~~g~-I~l~~ylK~vR~L 46 (65)
T 2f6m_A 5 LNQLYNLVAQDYALTDTIEALSRMLHRGT-IPLDTFVKQGREL 46 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHH
Confidence 44555555555555555555555555543 2333443333333
No 360
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=30.27 E-value=2.3e+02 Score=23.42 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHcCCCCchh--hHHHHHHHHHhcccHhHHHHHHHHHhHCCC
Q 046547 259 WKAVEMIEFLERKGCPIGFQ--GYEVVVEGCLECREYILAGKTVMGMTERGF 308 (343)
Q Consensus 259 ~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~g~ 308 (343)
.+..++-.-+..-.+.|.-. +...-|....+.+++..|..+-+++.+.+-
T Consensus 178 kR~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 229 (320)
T 3mkr_B 178 KRICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGP 229 (320)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 34455555555555665432 344556668889999999999999888763
No 361
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=29.39 E-value=1.3e+02 Score=19.99 Aligned_cols=27 Identities=26% Similarity=0.224 Sum_probs=11.8
Q ss_pred HHHHHHHHcCCCCchhhHHHHHHHHHh
Q 046547 263 EMIEFLERKGCPIGFQGYEVVVEGCLE 289 (343)
Q Consensus 263 ~~~~~m~~~g~~p~~~~~~~li~~~~~ 289 (343)
++.++...-|+.|+..+..-++..|..
T Consensus 30 ~L~eEfdefGi~~~d~VldKc~ELC~~ 56 (101)
T 2keb_A 30 QLAEELQIFGLDCEEALIEKLVELCVQ 56 (101)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 333344444444444444444444433
No 362
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=29.03 E-value=84 Score=23.10 Aligned_cols=60 Identities=13% Similarity=0.176 Sum_probs=35.2
Q ss_pred hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCcc--HHHHHHHHHHHHH
Q 046547 208 SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANRE--MWKAVEMIEFLER 270 (343)
Q Consensus 208 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~ 270 (343)
....+|.-|...|+.++|..-++++.. ....| .....+|......++ -+.+-.++..+..
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~-p~~~~--~~V~~~I~~aldrk~~ere~~s~LL~~L~~ 73 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNL-GEMKS--GVPVLAVSLALEGKASHREMTSKLLSDLCG 73 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTC-SGGGG--HHHHHHHHHHHTSCHHHHHHHHHHHHHHBT
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCC-cccHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 346778888888999999998888763 12221 223333443333332 3345667776643
No 363
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=29.00 E-value=1.5e+02 Score=20.82 Aligned_cols=9 Identities=0% Similarity=0.032 Sum_probs=3.9
Q ss_pred HHHccCcHH
Q 046547 180 SLCAIDQLV 188 (343)
Q Consensus 180 ~~~~~~~~~ 188 (343)
..+..|+.+
T Consensus 48 ~A~~~~~~~ 56 (165)
T 3twr_A 48 FAAGYNRVS 56 (165)
T ss_dssp HHHHTTCHH
T ss_pred HHHHcChHH
Confidence 333445543
No 364
>1gp8_A Protein (scaffolding protein); coat protein-binding domain, helix- loop-helix motif, viral protein; NMR {Enterobacteria phage P22} SCOP: j.58.1.1 PDB: 2gp8_A
Probab=28.56 E-value=71 Score=16.87 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 312 IKVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 312 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
.....--|...|..|+++.+..+=.+++.+
T Consensus 10 I~aiEQqiyvA~seGd~etv~~Le~QL~~l 39 (40)
T 1gp8_A 10 KDAIRKQMDAAASKGDVETYRKLKAKLKGI 39 (40)
T ss_dssp HHHHHHHHHHHHTTSCHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Confidence 334455566667777777776666555443
No 365
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=28.54 E-value=55 Score=18.86 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=15.9
Q ss_pred HHHHhHCCCCCCHHHHHHHHHHHhccCC--hhHHHHHHHHH
Q 046547 300 VMGMTERGFIPYIKVRQKVVEGLAGVGE--WKLATVVRQRF 338 (343)
Q Consensus 300 ~~~m~~~g~~p~~~~~~~li~~~~~~g~--~~~a~~~~~~m 338 (343)
++.+.+.|+.+. ....++.+.|. .+.|.+.+.+|
T Consensus 13 lq~L~eMGFd~e-----rae~Alk~Tg~~Gle~AmewL~k~ 48 (54)
T 2cos_A 13 LQELVNAGCDQE-----MAGRALKQTGSRSIEAALEYISKM 48 (54)
T ss_dssp HHHHHHHHCCHH-----HHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHHcCCCHH-----HHHHHHHHhCcccHHHHHHHHHHh
Confidence 444444454432 22234444444 55555555554
No 366
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=27.75 E-value=1.9e+02 Score=21.54 Aligned_cols=38 Identities=13% Similarity=-0.053 Sum_probs=18.2
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchh
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQ 153 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~ 153 (343)
.+..|+.+-+.. +.+.|..++. ...+.+..+ +..+ +.+
T Consensus 32 A~~~g~~~~v~~----Ll~~g~~~~~~~~~g~t~L~~A-~~~~-~~~ 72 (223)
T 2f8y_A 32 AARYSRSDAAKR----LLEASADANIQDNMGRTPLHAA-VSAD-AQG 72 (223)
T ss_dssp HHHTTCHHHHHH----HHHTTCCTTCCCTTSCCHHHHH-HHTT-CHH
T ss_pred HHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHH-HHcC-CHH
Confidence 345577554444 4445655543 334455444 4443 443
No 367
>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}
Probab=27.42 E-value=1.7e+02 Score=23.16 Aligned_cols=184 Identities=9% Similarity=-0.002 Sum_probs=77.9
Q ss_pred CChhhHHHHHHHHhhcCCChHHHHHHHHHHHhcCCCcc-----------HHHHHHHHHHHHhccCchhHHHHHHHHHHhc
Q 046547 97 RPKIAYDYLLSYTLQSLHPLPLALAILQRTLRSGCVPV-----------PQIRLLLSSAWLERRCQSQSVADILLEMKSI 165 (343)
Q Consensus 97 p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~~~~p~-----------~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~ 165 (343)
.|......|+. ++ ..|+.+.+..+ .+.|..+. ....+.+..+ +..+ ....++..+.+.
T Consensus 7 kd~~~~~~L~~-A~-~~G~~~~v~~L----L~~~~~~~~~~~~~~~~~~~~~~t~L~~a-~~~~----~~~~~v~~Ll~~ 75 (269)
T 4b93_B 7 KDYREVEKLLR-AV-ADGDLEMVRYL----LEWTEEDLEDAEDTVSAADPEFCHPLCQC-PKCA----PAQKRLAKVPAS 75 (269)
T ss_dssp CCCHHHHHHHH-HH-HTTCHHHHHHH----HTCC---------------------------------------------C
T ss_pred cCccchhHHHH-HH-HcCCHHHHHHH----HHCCCcccccccccccccCccCCCHHHHH-HHhC----CHHHHHHHHHHC
Confidence 45566777885 44 45887655444 44443221 1112223322 2221 233456667788
Q ss_pred CCccCHh---hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHh---hHHHHHHHHhcCCChhHHHHHHHHHHhcCCCC
Q 046547 166 GYHPDCG---TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLE---SYSIVIGAMSTARKTNDAVEMMKEMVLNMGLM 239 (343)
Q Consensus 166 g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 239 (343)
|..++.. -++.| ...+..|+.+-+. .+.+.|..++.. -.+.+. ..+..+..+ +.+.+.+ .|..
T Consensus 76 Gadvn~~d~~G~TpL-h~A~~~g~~~~v~----~Ll~~~a~~~~~~~~g~t~l~-~a~~~~~~~----~~~~Ll~-~g~~ 144 (269)
T 4b93_B 76 GLGVNVTSQDGSSPL-HVAALHGRADLIP----LLLKHGANAGARNADQAVPLH-LACQQGHFQ----VVKCLLD-SNAK 144 (269)
T ss_dssp CCCTTCCCTTSCCHH-HHHHHTTCTTHHH----HHHHTTCCTTCCCTTCCCHHH-HHHHHTCHH----HHHHHHH-TTCC
T ss_pred CCCCCCcCCCCCCHH-HHHHHcCcHHHHH----HHHhcCCCcCccCCCCCCccc-cccccChHH----HHHHHHH-CCCC
Confidence 8777643 23444 3445567765443 334455444322 222232 333334433 3444444 3666
Q ss_pred Cchh---HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh---HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCH
Q 046547 240 PRQG---MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG---YEVVVEGCLECREYILAGKTVMGMTERGFIPYI 312 (343)
Q Consensus 240 p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~ 312 (343)
|+.. -.+.|..+ +..|+.+-+. .+.+.|..++... .+.| ...+..|+.+-+.- +.+.|..|+.
T Consensus 145 ~n~~d~~g~TpL~~A-~~~g~~~~v~----~Ll~~gadvn~~~~~g~t~L-h~A~~~g~~~~v~~----Ll~~Gad~~~ 213 (269)
T 4b93_B 145 PNKKDLSGNTPLIYA-CSGGHHELVA----LLLQHGASINASNNKGNTAL-HEAVIEKHVFVVEL----LLLHGASVQV 213 (269)
T ss_dssp SCCCCTTCCCHHHHH-HHTTCGGGHH----HHHHTTCCTTCBCTTSCBHH-HHHHHTTCHHHHHH----HHHTTCCSCC
T ss_pred CCCCCCCCCCHHHHH-HHCCCHHHHH----HHHHCCCCCCccccCCCcHH-HHHHHcCCHHHHHH----HHHCCCCCCC
Confidence 6532 23455544 4566665443 4445676665432 3333 44456677654433 4456766643
No 368
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=27.06 E-value=1e+02 Score=21.21 Aligned_cols=43 Identities=7% Similarity=-0.169 Sum_probs=29.8
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
-+|+.+.. ..+.|++...-.-|..+...++++.|.++.-.+..
T Consensus 47 ~LfdkLn~-~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAG-GKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHH-TCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhc-CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35666665 47766655544445556778899999999988775
No 369
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*
Probab=26.81 E-value=1.5e+02 Score=23.13 Aligned_cols=62 Identities=13% Similarity=-0.023 Sum_probs=34.0
Q ss_pred cHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCcc-------CHhhHHHHHHHHH--ccCcHHHHHHHHHHh
Q 046547 134 VPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHP-------DCGTCNYLVSSLC--AIDQLVEAAKVLKGM 197 (343)
Q Consensus 134 ~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~-------~~~~~~~ll~~~~--~~~~~~~a~~~~~~m 197 (343)
|..-.+.|..+ +..| +.+.+..+++...+.+... +..-++.|..+.. +.|+.+-+.-+++.-
T Consensus 10 d~~g~t~L~~A-~~~g-~~~~v~~Ll~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~~~~~g~~~~v~~Ll~~g 80 (273)
T 2pnn_A 10 RLYDRRSIFDA-VAQS-NCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAMLNLHNGQNDTIALLLDVA 80 (273)
T ss_dssp -CCCHHHHHHH-HHTT-CSSTTTTHHHHHHHSCCCTTSGGGSCTTTCCCHHHHHHHSCBTTBCHHHHHHHHHH
T ss_pred CcccchHHHHH-HHcC-CHHHHHHHHHHHhhcccccCCcccccCcCCCCHHHHHHHHHhcCChHHHHHHHHhh
Confidence 33345556555 4554 5777777777766665433 3344555555553 246666665555543
No 370
>2dod_A Transcription elongation regulator 1; FF domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.159.2.1
Probab=26.58 E-value=89 Score=19.88 Aligned_cols=30 Identities=17% Similarity=0.195 Sum_probs=15.2
Q ss_pred hhHHHHHHHHHHhcCCCCCchhHHHHHHHHH
Q 046547 222 TNDAVEMMKEMVLNMGLMPRQGMVIKVAAAL 252 (343)
Q Consensus 222 ~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~ 252 (343)
.++|...|.+|..+.++.|+. +|...+...
T Consensus 16 ~eea~~~Fk~LL~e~~V~p~~-tWe~~~~~i 45 (82)
T 2dod_A 16 LEARMKQFKDMLLERGVSAFS-TWEKELHKI 45 (82)
T ss_dssp HHHHHHHHHHHHHHTTCCSSS-CHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCcCCCC-CHHHHHHHH
Confidence 345555666655554555443 444444443
No 371
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=26.46 E-value=2.8e+02 Score=23.13 Aligned_cols=131 Identities=11% Similarity=-0.048 Sum_probs=70.6
Q ss_pred HHHHHHHHHhcCCCccHHHHHHHHHHHHhccCchhHHHHHHHHH----HhcC--CccCHhhHHHHHHHHHccCcHHHHHH
Q 046547 119 ALAILQRTLRSGCVPVPQIRLLLSSAWLERRCQSQSVADILLEM----KSIG--YHPDCGTCNYLVSSLCAIDQLVEAAK 192 (343)
Q Consensus 119 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m----~~~g--~~~~~~~~~~ll~~~~~~~~~~~a~~ 192 (343)
+.-+++...+.++++|..+..-++..+.........-..+++.+ .+.| ..-|+.....+-..|.+.+++.+|..
T Consensus 78 ~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~ 157 (336)
T 3lpz_A 78 AVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEK 157 (336)
T ss_dssp HHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 33334555667777777766666655433221111112233333 2223 23466777788888999999999888
Q ss_pred HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHH
Q 046547 193 VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLE 269 (343)
Q Consensus 193 ~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 269 (343)
.|- .|-.+...+|..++..+...+... .+|...-.+++. |.-.++...|..+++...
T Consensus 158 H~i----lg~~~s~~~~a~mL~ew~~~~~~~---------------e~dlfiaRaVL~-yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 158 HLV----LGTKESPEVLARMEYEWYKQDESH---------------TAPLYCARAVLP-YLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHT----TSCTTHHHHHHHHHHHHHHTSCGG---------------GHHHHHHHHHHH-HHHTTCHHHHHHHHHHHH
T ss_pred HHH----hcCCchHHHHHHHHHHHHHhcCCc---------------cHHHHHHHHHHH-HHHhCCHHHHHHHHHHHH
Confidence 772 233444467766665544433311 123333333343 445566777777666554
No 372
>1a1w_A FADD protein; apoptosis, death effector domain; NMR {Homo sapiens} SCOP: a.77.1.4 PDB: 1a1z_A
Probab=26.41 E-value=57 Score=21.25 Aligned_cols=74 Identities=19% Similarity=0.127 Sum_probs=42.8
Q ss_pred hhhhhhhhccccCCCCHHHHHHHHHHHhCcc---CcchHHHHHHHchhcCC-CCChHHH-hhhhhhcccchHHHHHHHH
Q 046547 15 FRPCLLQFSSLRSMSSLRTLEETVRAAVDAK---DYQQIPELLGSFEEACQ-NPNPFSF-LSNFPQNHRIKVIDEMLES 88 (343)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~-~p~~~~~-~~~~~~~~~~~~~~~~~~~ 88 (343)
|++.+..++..-+...+...--+...+.-.+ +...+.++|..+.+.+. .|+-..+ ...+..-+|.+.+.++...
T Consensus 4 fr~lL~~Ise~L~~eel~~LKFLc~d~i~~~kle~i~s~~dlf~~Le~~~~l~~~nl~~L~elL~~I~R~DLl~~v~~~ 82 (91)
T 1a1w_A 4 FLVLLHSVSSSLSSSELTELKYLCLGRVGKRKLERVQSGLDLFSMLLEQNDLEPGHTELLRELLASLRRHDLLRRVDDF 82 (91)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHHTCSHHHHHCSSSHHHHHHHHHTTSCBTTBCHHHHHHHHHHTCSHHHHHHHHH
T ss_pred HHHHHHHHHHHcCHHHHHHHHHHhHhhccchhhhccCCHHHHHHHHHHcCCCCcchHHHHHHHHHHCCHHHHHHHHHHh
Confidence 4455555554443333333333333333344 44455999999988765 4544444 5667777888887777665
No 373
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=26.21 E-value=2.6e+02 Score=22.56 Aligned_cols=76 Identities=8% Similarity=-0.019 Sum_probs=37.0
Q ss_pred HHHHHhhhCCCCCCHhhH--HHHHHHHhcCCChhHHHHHHHHHHhcCCCCCch---hHHHHHHHHHHhCccHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESY--SIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQ---GMVIKVAAALRANREMWKAVEMIE 266 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~---~~~~~li~~~~~~~~~~~a~~~~~ 266 (343)
++++.+.+.|..++.... .+.+...+..|+.+ +++.+.+ .|..++. .-.+.|..+ +..|+.+- .+
T Consensus 228 ~~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~-~ga~~n~~d~~g~t~L~~A-~~~~~~~~----v~ 297 (351)
T 3utm_A 228 QVAELLLRKGANVNEKNKDFMTPLHVAAERAHND----VMEVLHK-HGAKMNALDSLGQTALHRA-ALAGHLQT----CR 297 (351)
T ss_dssp HHHHHHHHTTCCTTCCCTTCCCHHHHHHHTTCHH----HHHHHHH-TTCCTTCCCTTSCCHHHHH-HHHTCHHH----HH
T ss_pred HHHHHHHHcCCCcCCcCCCCCCHHHHHHHcCCHH----HHHHHHH-CCCCCCCcCCCCCCHHHHH-HHcCcHHH----HH
Confidence 344555556655543211 12344455667764 3334444 3655543 223444444 45566554 44
Q ss_pred HHHHcCCCCch
Q 046547 267 FLERKGCPIGF 277 (343)
Q Consensus 267 ~m~~~g~~p~~ 277 (343)
.+.+.|..|+.
T Consensus 298 ~Ll~~gad~~~ 308 (351)
T 3utm_A 298 LLLSYGSDPSI 308 (351)
T ss_dssp HHHHTTCCTTC
T ss_pred HHHHcCCCCCC
Confidence 45556666554
No 374
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=26.09 E-value=1.1e+02 Score=19.94 Aligned_cols=21 Identities=14% Similarity=-0.040 Sum_probs=11.4
Q ss_pred HHHHHHHHhcccHhHHHHHHH
Q 046547 281 EVVVEGCLECREYILAGKTVM 301 (343)
Q Consensus 281 ~~li~~~~~~g~~~~a~~~~~ 301 (343)
...-+.+.+.|++++|++...
T Consensus 19 ~RrAe~ll~~gkydeAIech~ 39 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHR 39 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHH
Confidence 344445556666666655544
No 375
>2rg8_A Programmed cell death protein 4; MA3 domain, heat repeats, anti-oncogene, apoptosis, cell cycle, cytoplasm, nucleus, phosphorylation, polymorphism; 1.80A {Homo sapiens} PDB: 2kzt_A
Probab=26.00 E-value=89 Score=22.98 Aligned_cols=71 Identities=8% Similarity=0.142 Sum_probs=41.8
Q ss_pred hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCchhHHHH
Q 046547 173 TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK--TNDAVEMMKEMVLNMGLMPRQGMVIK 247 (343)
Q Consensus 173 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~~ 247 (343)
....+|.-|...++.++|...++++......| ..+ ..+|..-...++ .+.+..++..+. . ++-+.......
T Consensus 12 k~~~ii~EYf~~~D~~Ea~~~l~eL~~p~~~~-~~V-~~~I~~aldrk~~ere~~s~LL~~L~-~-~~ls~~~i~~G 84 (165)
T 2rg8_A 12 TLTPIIQEYFEHGDTNEVAEMLRDLNLGEMKS-GVP-VLAVSLALEGKASHREMTSKLLSDLC-G-TVMSTTDVEKS 84 (165)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCSGGGG-HHH-HHHHHHHHTSCHHHHHHHHHHHHHHB-T-TTBCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCcccHH-HHH-HHHHHHHHcCCHHHHHHHHHHHHHHH-H-CCCCHHHHHHH
Confidence 35678899999999999999999987433221 222 233333333333 234667777774 2 55444444333
No 376
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=25.68 E-value=1.1e+02 Score=19.95 Aligned_cols=38 Identities=18% Similarity=0.218 Sum_probs=20.3
Q ss_pred ccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhccCChhHHH
Q 046547 291 REYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGVGEWKLAT 332 (343)
Q Consensus 291 g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~~a~ 332 (343)
.+.+.|.++++.+..+| ...|..++.++...|...-|.
T Consensus 51 t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 34556666666555554 234555666665555544443
No 377
>3no6_A Transcriptional activator TENA; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.65A {Staphylococcus epidermidis} SCOP: a.132.1.0
Probab=25.67 E-value=2.5e+02 Score=22.15 Aligned_cols=24 Identities=4% Similarity=-0.177 Sum_probs=13.2
Q ss_pred ccCHhhHHHHHHHHHcc-CcHHHHH
Q 046547 168 HPDCGTCNYLVSSLCAI-DQLVEAA 191 (343)
Q Consensus 168 ~~~~~~~~~ll~~~~~~-~~~~~a~ 191 (343)
.|....|+..+...+.. |++.++.
T Consensus 126 ~p~~~aYt~~ll~~a~~~g~~~~~l 150 (248)
T 3no6_A 126 PPSGDHYIKHMYFNAFARENAAFTI 150 (248)
T ss_dssp CHHHHHHHHHHHHHHHHCSSTHHHH
T ss_pred CHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 33445566666665555 6655543
No 378
>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A
Probab=25.42 E-value=1.9e+02 Score=20.84 Aligned_cols=46 Identities=13% Similarity=0.188 Sum_probs=22.4
Q ss_pred HHhCccCcchHHHHHHHchhcCCCCCh-----HHHhhhhhhcccchHHHHHHHHh
Q 046547 40 AAVDAKDYQQIPELLGSFEEACQNPNP-----FSFLSNFPQNHRIKVIDEMLESF 89 (343)
Q Consensus 40 ~~~~~~~~~~a~~~~~~m~~~~~~p~~-----~~~~~~~~~~~~~~~~~~~~~~~ 89 (343)
..++.|+.+.+..+++ .|..|+. .|-+...+..+..+.+..+++..
T Consensus 10 ~Aa~~G~~~~v~~Ll~----~Gadvn~~d~~g~t~l~~a~~~~~~~~~~~ll~~g 60 (169)
T 4gpm_A 10 EAAENGNKDRVKDLIE----NGADVNASDSDGRTPLHHAAENGHKEVVKLLISKG 60 (169)
T ss_dssp HHHHTTCHHHHHHHHH----TTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHH----CCCCCCCcCCCCCCHHHHHHHcCCHHHHHHHHhcc
Confidence 3445676666555554 2333322 12244444555555555555543
No 379
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=24.98 E-value=1.6e+02 Score=22.27 Aligned_cols=53 Identities=8% Similarity=-0.112 Sum_probs=27.5
Q ss_pred HHHHHhcccHhHHHHHHHHHhHCCCCCCHH--HHHHHHHHHhccCChhHHHHHHHHHHh
Q 046547 284 VEGCLECREYILAGKTVMGMTERGFIPYIK--VRQKVVEGLAGVGEWKLATVVRQRFAE 340 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~ 340 (343)
+...++.|+.+-+..+ .+.|..++.. .-.+-+...+..|+.+.+.++.+.+.+
T Consensus 181 L~~A~~~~~~~~v~~L----l~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 181 LHIAARENRYDCVVLF----LSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHHHHHTTCHHHHHHH----HTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHhHHHHH----HHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3344455655443333 3444443211 112344556677777778777777665
No 380
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}
Probab=24.80 E-value=2.7e+02 Score=22.39 Aligned_cols=122 Identities=14% Similarity=0.151 Sum_probs=65.7
Q ss_pred HHHHHHHhCccCcchHHHHHHHchhcCCCCC--hHHHhhhhhhcccchHHHHHHHHhcCCCCCCCChhhHHHHHHHHhhc
Q 046547 35 EETVRAAVDAKDYQQIPELLGSFEEACQNPN--PFSFLSNFPQNHRIKVIDEMLESFIPLRPRSRPKIAYDYLLSYTLQS 112 (343)
Q Consensus 35 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~li~~~~~~ 112 (343)
...+...++.|+.+.+..++......-...+ -.|-+...+..|..+.++.+++..... ..+|...++.|. ..+.
T Consensus 25 ~~~L~~A~~~g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~g~~~--~~~~~~g~t~L~--~A~~ 100 (351)
T 3utm_A 25 KDELLEAARSGNEEKLMALLTPLNVNCHASDGRKSTPLHLAAGYNRVRIVQLLLQHGADV--HAKDKGGLVPLH--NACS 100 (351)
T ss_dssp HHHHHHHHHHTCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHHHTTCHHHHHHHHHTTCCT--TCCCTTCCCHHH--HHHH
T ss_pred chhHHHHHHcCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHHHcCCHHHHHHHHHcCCCC--CccCCCCCcHHH--HHHH
Confidence 3456667778888888877764221111112 234466667788888888888865432 223444444454 3344
Q ss_pred CCChHHHHHHHHHHHhcCCCccH---HHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccC
Q 046547 113 LHPLPLALAILQRTLRSGCVPVP---QIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPD 170 (343)
Q Consensus 113 ~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~ 170 (343)
.|+.+- ++.+.+.|..++. ..++.+..+ +..+ ..+ +.+.+.+.|..|+
T Consensus 101 ~g~~~i----v~~Ll~~g~~~~~~~~~g~t~L~~A-~~~~-~~~----~v~~Ll~~g~~~~ 151 (351)
T 3utm_A 101 YGHYEV----TELLLKHGACVNAMDLWQFTPLHEA-ASKN-RVE----VCSLLLSHGADPT 151 (351)
T ss_dssp TTCHHH----HHHHHHTTCCTTCCCTTCCCHHHHH-HHTT-CHH----HHHHHHHTTCCTT
T ss_pred CCCHHH----HHHHHHCCCCCCCCCCCCCCHHHHH-HHcC-CHH----HHHHHHHcCCCCc
Confidence 577554 4444455655443 233455444 4443 444 4444555666654
No 381
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A
Probab=24.26 E-value=1.6e+02 Score=21.95 Aligned_cols=177 Identities=8% Similarity=-0.078 Sum_probs=82.9
Q ss_pred HHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHh---hHHHHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHH
Q 046547 137 IRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCG---TCNYLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVI 213 (343)
Q Consensus 137 ~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 213 (343)
-.+.|..+ +..+ +.+ +++.+.+.|..++.. .++ .+...+..|+.+-+..+++.-...--..+..-.+.+.
T Consensus 25 g~t~L~~A-~~~g-~~~----~v~~Ll~~g~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~g~t~L~ 97 (223)
T 2f8y_A 25 GETALHLA-ARYS-RSD----AAKRLLEASADANIQDNMGRT-PLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLI 97 (223)
T ss_dssp CCCHHHHH-HHTT-CHH----HHHHHHHTTCCTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHBTTSCTTCCCTTCCCHHH
T ss_pred CCchHHHH-HHcC-CHH----HHHHHHHcCCCCCCcCCCCCC-HHHHHHHcCCHHHHHHHHHcCCCCcccCCCCCCcHHH
Confidence 34455544 5554 454 445555667666543 233 4455566777765544443211011112333344444
Q ss_pred HHHhcCCChhHHHHHHHHHHhcCCCCCchh---HHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchh---hHHHHHHHH
Q 046547 214 GAMSTARKTNDAVEMMKEMVLNMGLMPRQG---MVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQ---GYEVVVEGC 287 (343)
Q Consensus 214 ~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---~~~~li~~~ 287 (343)
.+ +..|+.+ +++.+.+ .|..++.. -.+.|.. .+..|+.+-+ +.+.+.|..++.. -.+. +...
T Consensus 98 ~A-~~~~~~~----~~~~Ll~-~g~~~~~~~~~g~t~L~~-A~~~~~~~~v----~~Ll~~g~~~~~~~~~g~t~-L~~A 165 (223)
T 2f8y_A 98 LA-ARLAVEG----MLEDLIN-SHADVNAVDDLGKSALHW-AAAVNNVDAA----VVLLKNGANKDMQNNREETP-LFLA 165 (223)
T ss_dssp HH-HHHTCHH----HHHHHHH-TTCCTTCBCTTSCBHHHH-HHHTTCHHHH----HHHHHTTCCTTCCCTTCCCH-HHHH
T ss_pred HH-HHhCcHH----HHHHHHH-cCCCCcCcCCCCCcHHHH-HHHcCCHHHH----HHHHHcCCCCCCcCCCCcCH-HHHH
Confidence 33 4445554 3444443 35555432 2334443 4566665544 4444556655433 2233 3444
Q ss_pred HhcccHhHHHHHHHHHhHCCCCCCHHH--HHHHHHHHhccCChhHHHHHHH
Q 046547 288 LECREYILAGKTVMGMTERGFIPYIKV--RQKVVEGLAGVGEWKLATVVRQ 336 (343)
Q Consensus 288 ~~~g~~~~a~~~~~~m~~~g~~p~~~~--~~~li~~~~~~g~~~~a~~~~~ 336 (343)
++.|+.+-+.. +.+.|..|+... -.+.+....+.|+.+-+..+++
T Consensus 166 ~~~~~~~~v~~----Ll~~ga~~~~~~~~g~t~l~~A~~~~~~~i~~~L~~ 212 (223)
T 2f8y_A 166 AREGSYETAKV----LLDHFANRDITDHMDRLPRDIAQERMHHDIVRLLDE 212 (223)
T ss_dssp HHHTCHHHHHH----HHHTTCCTTCCCTTCCCHHHHHHHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHH----HHHcCCCCccccccCCCHHHHHHHhcchHHHHHHHH
Confidence 56666654443 445555553221 1233445566676665554443
No 382
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=24.12 E-value=3.6e+02 Score=23.48 Aligned_cols=152 Identities=9% Similarity=-0.043 Sum_probs=0.0
Q ss_pred ChHHHHHHHHHHHh--------cCCCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCC----ccCHhhHHHHHHHHH
Q 046547 115 PLPLALAILQRTLR--------SGCVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGY----HPDCGTCNYLVSSLC 182 (343)
Q Consensus 115 ~~~~a~~~~~~m~~--------~~~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~----~~~~~~~~~ll~~~~ 182 (343)
..++...+++...+ .++..+......+... .+|+..++..+++.+..... .....+-..+-....
T Consensus 166 ~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~---~~Gd~R~lln~Le~a~~~a~~~~~~~~~It~e~v~~~l~ 242 (447)
T 3pvs_A 166 STEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAEL---VNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242 (447)
T ss_dssp CHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHH---HCSCHHHHHHHHHHHHHHSCBCTTSCEECCHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccccCCCCccCHHHHHHHHh
Q ss_pred cc------------------------CcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCCC-----hhHHHHHHHHHH
Q 046547 183 AI------------------------DQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTARK-----TNDAVEMMKEMV 233 (343)
Q Consensus 183 ~~------------------------~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-----~~~a~~~~~~m~ 233 (343)
+. ++.+.|+..+.+|.+.|..|....-..+..+.-..|. ...|...++...
T Consensus 243 ~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~ 322 (447)
T 3pvs_A 243 ERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFT 322 (447)
T ss_dssp CCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHH
T ss_pred hhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHH
Q ss_pred hcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHH
Q 046547 234 LNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 234 ~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
. -|.+-........+-.++.+-+...+..-++...+
T Consensus 323 ~-~g~pe~~~~l~~~~~~la~~pksn~~~~a~~~a~~ 358 (447)
T 3pvs_A 323 R-VGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALA 358 (447)
T ss_dssp H-SCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHH
T ss_pred H-hCCcHHHHHHHHHHHHHHcCCcchHHHHHHHHHHH
No 383
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.03 E-value=91 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.139 Sum_probs=15.2
Q ss_pred HHHHHHHHHHhcCCccCHhhHHHHHHHHHccC
Q 046547 154 SVADILLEMKSIGYHPDCGTCNYLVSSLCAID 185 (343)
Q Consensus 154 ~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~ 185 (343)
.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 28 sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 28 SAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp EHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred CHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 45555555555544444444333344444444
No 384
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=23.88 E-value=1.6e+02 Score=22.78 Aligned_cols=52 Identities=10% Similarity=-0.103 Sum_probs=29.5
Q ss_pred hhcCCChHHHHHHHHHHHhcCCCccH-------HHHHHHHHHHHhc--cCchhHHHHHHHHH
Q 046547 110 LQSLHPLPLALAILQRTLRSGCVPVP-------QIRLLLSSAWLER--RCQSQSVADILLEM 162 (343)
Q Consensus 110 ~~~~~~~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~--~~~~~~a~~~~~~m 162 (343)
.+..|+.+.+..+++.+.+.|..++. ...+.|..+ +.. .+..+-+..+++.-
T Consensus 9 A~~~g~~~~v~~ll~~l~~~g~~i~~~~~~~d~~g~t~L~~A-~~~~~~g~~~~v~~Ll~~g 69 (256)
T 2etb_A 9 VVSRGVPEELTGLLEYLRWNSKYLTDSAYTEGSTGKTCLMKA-VLNLQDGVNACIMPLLQID 69 (256)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSBTTTTBCHHHHH-HHTCBTTBCTTHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcCCCcccccccCCCCCCCHHHHH-HHccccchHHHHHHHHhcC
Confidence 34558888887888877777765443 334555544 333 13455444455443
No 385
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=23.81 E-value=3e+02 Score=22.57 Aligned_cols=91 Identities=10% Similarity=0.142 Sum_probs=54.0
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHH----HHhCccHHHHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAA----LRANREMWKAVEMIEF 267 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~----~~~~~~~~~a~~~~~~ 267 (343)
+++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+... |...-..+.-+++.. .....+.++...++..
T Consensus 209 ~L~~hL~~~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~-g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQ-GTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHHTTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHH-CTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHHcCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHC-CcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 45666777788888888888888888777788888888888764 544222222222222 2233467777776665
Q ss_pred HHHcCCCCchhhHHHHHHH
Q 046547 268 LERKGCPIGFQGYEVVVEG 286 (343)
Q Consensus 268 m~~~g~~p~~~~~~~li~~ 286 (343)
.... .+......++.-
T Consensus 288 ~~p~---~~~~di~~li~~ 303 (331)
T 3qye_A 288 TLPN---LGLVQMEKTINQ 303 (331)
T ss_dssp TTTC---CCHHHHHHHHHH
T ss_pred hCCC---CCHHHHHHHHHH
Confidence 3321 233344444543
No 386
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=23.54 E-value=1.5e+02 Score=20.87 Aligned_cols=45 Identities=16% Similarity=0.107 Sum_probs=23.3
Q ss_pred HHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 211 IVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 211 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
.++..+...+..-.|.++++.+.++ +...+..|.-.-++.+...|
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~-~~~is~aTVYR~L~~L~e~G 62 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHK-GDAVGLTTVYRTLQSLADAG 62 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHT-TCCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHh-CCCCCHHHHHHHHHHHHHCC
Confidence 4455555555555666666666653 44445544444444444444
No 387
>3r88_A Anthranilate phosphoribosyltransferase; anthranilic acids, M tryptophan, inhibitor, magnesium binding phosp pyrophosphate; HET: PRP 14F; 1.73A {Mycobacterium tuberculosis} PDB: 3qqs_A 3qs8_A* 3qsa_A* 3qr9_A* 3r6c_A* 3twp_A* 1zvw_A* 2bpq_A
Probab=23.14 E-value=3.5e+02 Score=23.00 Aligned_cols=66 Identities=12% Similarity=0.149 Sum_probs=46.9
Q ss_pred CHhhHHHHHHHHhcCCC--hhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Q 046547 205 DLESYSIVIGAMSTARK--TNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKG 272 (343)
Q Consensus 205 ~~~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 272 (343)
+..||..+|..+....+ .+++..+++.+.. |-.++...=..|+....|.-..++...+.+.|++.+
T Consensus 22 ~~~t~~~il~~l~~g~~Ls~eEa~~~~~~i~~--G~~~~~QiaAfL~Alr~kGet~eEi~g~~~am~~~~ 89 (377)
T 3r88_A 22 SVPSWPQILGRLTDNRDLARGQAAWAMDQIMT--GNARPAQIAAFAVAMTMKAPTADEVGELAGVMLSHA 89 (377)
T ss_dssp --CCHHHHHHHHHTTCCCCTTHHHHHHHHHHT--TCSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHC--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHhC
Confidence 34578888888777665 4678888888884 666777666666666777777888877777777654
No 388
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=22.02 E-value=2.4e+02 Score=20.83 Aligned_cols=109 Identities=16% Similarity=-0.085 Sum_probs=47.1
Q ss_pred CCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHH
Q 046547 204 PDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVV 283 (343)
Q Consensus 204 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 283 (343)
++..+-...+.++.+.|+.+ +...+..+.. .|+..+-...+.++.+.+..+ +...+..+.+ .++...-...
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~----d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a 163 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDER-AVEPLIKALK----DEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSA 163 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT----CSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHH-HHHHHHHHHh----CCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHH
Confidence 34444444555555555432 3333333332 244445555555555554432 2333333332 2344444445
Q ss_pred HHHHHhcccHhHHHHHHHHHhHCCCCCCHHHHHHHHHHHhcc
Q 046547 284 VEGCLECREYILAGKTVMGMTERGFIPYIKVRQKVVEGLAGV 325 (343)
Q Consensus 284 i~~~~~~g~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 325 (343)
+.++.+.+. +++...+.++.+. ++..+-...+.++.+.
T Consensus 164 ~~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~ 201 (211)
T 3ltm_A 164 ADALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETH 201 (211)
T ss_dssp HHHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC-
T ss_pred HHHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhc
Confidence 555555554 3344444444432 2334444444444443
No 389
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=22.01 E-value=4e+02 Score=23.90 Aligned_cols=43 Identities=9% Similarity=0.093 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHhcCCccCHhhHHHHHHHHHccCcHHHHHHHHHHh
Q 046547 152 SQSVADILLEMKSIGYHPDCGTCNYLVSSLCAIDQLVEAAKVLKGM 197 (343)
Q Consensus 152 ~~~a~~~~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m 197 (343)
..+|.++|++.... .+.........-|...+-++.|.++--..
T Consensus 51 L~eAl~Lf~~va~~---l~l~~L~~~c~~~~~l~~y~GaVeL~L~~ 93 (525)
T 3i5p_A 51 LKNATALLEQIVDD---LSIEKLKEAVSMMLSVNYYPKSIEFLLNI 93 (525)
T ss_dssp HHHHHC-------------CHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcc---CCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 45566666654321 12223334467777778888777765444
No 390
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=22.00 E-value=4.5e+02 Score=25.60 Aligned_cols=108 Identities=12% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHhcCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhh------------
Q 046547 212 VIGAMSTARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQG------------ 279 (343)
Q Consensus 212 ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~------------ 279 (343)
++..+...|..+-|.++..-+.. +...--.+-.+|...|++++|.+.|.+. ..|+..+...
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~------t~~~~yv~gr~~L~~ge~~~A~~~F~kA-A~gl~~~~~~~~~~~~~~~ll~ 888 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNS------DPIAVYLKALIYLKSKEAVKAVRCFKTT-SLVLYSHTSQFAVLREFQEIAE 888 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCS------SHHHHHHHHHHHHHTTCHHHHHHHHHTC-CCTTCSSCCSCGGGHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhcCC------ChHHHHHHHHHHHHcCCHHHHHHHHHHH-hhhcccCcccccchhhhhhccC
Q ss_pred -----------HHHHHHHHHhcccHhHHHHHHHHHhHCCCCCCHH----HHHHHHHHHhccC
Q 046547 280 -----------YEVVVEGCLECREYILAGKTVMGMTERGFIPYIK----VRQKVVEGLAGVG 326 (343)
Q Consensus 280 -----------~~~li~~~~~~g~~~~a~~~~~~m~~~g~~p~~~----~~~~li~~~~~~g 326 (343)
|..++..|-+.+-++.+.++-+..++.--.-|.. .|..++++.+..|
T Consensus 889 ~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 889 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp HTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred cccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
No 391
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.73 E-value=2.7e+02 Score=21.24 Aligned_cols=37 Identities=8% Similarity=-0.006 Sum_probs=22.7
Q ss_pred cCCChhHHHHHHHHHHhcCCCCCchhHHHHHHHHHHhCc
Q 046547 218 TARKTNDAVEMMKEMVLNMGLMPRQGMVIKVAAALRANR 256 (343)
Q Consensus 218 ~~~~~~~a~~~~~~m~~~~~~~p~~~~~~~li~~~~~~~ 256 (343)
+.++.|.|+-++-.|.+ .| .|....-..++-+.-..|
T Consensus 26 RGSDpDAAly~LaRml~-~G-Dp~~IaRRLvi~AsEDIG 62 (204)
T 2r9g_A 26 RGSDVDAALHYLARLVE-AG-DLASICRRLMVIGYEDIG 62 (204)
T ss_dssp HTTCHHHHHHHHHHHHH-HT-CHHHHHHHHHHHHHHTTG
T ss_pred hcCCHHHHHHHHHHHHH-cC-CHHHHHHHHHHHHHhhcc
Confidence 44667777777777776 36 665555555555555555
No 392
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=21.29 E-value=4.5e+02 Score=23.57 Aligned_cols=64 Identities=8% Similarity=0.040 Sum_probs=34.1
Q ss_pred HhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCC-CCch--hHHH-HHHHHHHhCccHHHHHHHHHHHHH
Q 046547 206 LESYSIVIGAMSTARKTNDAVEMMKEMVLNMGL-MPRQ--GMVI-KVAAALRANREMWKAVEMIEFLER 270 (343)
Q Consensus 206 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-~p~~--~~~~-~li~~~~~~~~~~~a~~~~~~m~~ 270 (343)
...+|.+++.|...+.++.|..+.....- ... .++. ..|. -+-..+.-.+++.+|.+.+.....
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~f-P~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~r 298 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEY-PHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIR 298 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCS-CTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcC-CcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34567777777777777777777776541 110 1111 1111 112233455677777776666554
No 393
>3m6y_A 4-hydroxy-2-oxoglutarate aldolase; structural genomics, MCSG, lyase, PSI-2, protein structure initiative; HET: MSE; 1.45A {Bacillus cereus} PDB: 3n73_A 3mux_A
Probab=20.99 E-value=79 Score=24.99 Aligned_cols=29 Identities=10% Similarity=0.121 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccCChhHHHHHHHHHHhh
Q 046547 313 KVRQKVVEGLAGVGEWKLATVVRQRFAEL 341 (343)
Q Consensus 313 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~ 341 (343)
+.|+++|+--...-+.++..+++..++++
T Consensus 242 HIYsSIIDk~TG~TrpedV~~ll~~~K~l 270 (275)
T 3m6y_A 242 HVYSSIIDKETGNTKVEAVRELLAVVKKL 270 (275)
T ss_dssp EECGGGBCTTTCCBCHHHHHHHHHHHHHH
T ss_pred cccceeccCCCCCCCHHHHHHHHHHHHHH
Confidence 44555555555555566666666655543
No 394
>2p22_A Suppressor protein STP22 of temperature- sensitive alpha-factor receptor and arginine...; endosome, trafficking complex, VPS23, VPS28, VPS37, MVB12; 2.70A {Saccharomyces cerevisiae} PDB: 2caz_A
Probab=20.77 E-value=1.8e+02 Score=21.66 Aligned_cols=50 Identities=6% Similarity=0.074 Sum_probs=31.5
Q ss_pred CchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHHHHhc
Q 046547 240 PRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEGCLEC 290 (343)
Q Consensus 240 p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~~~~~ 290 (343)
|....++.++..++...-++.++..+.+....|. .+..+|---++.+++.
T Consensus 109 ~~~~l~~Qll~l~Aed~AieDaIy~L~~al~~g~-I~ld~ylK~vR~LaRe 158 (174)
T 2p22_A 109 AKTDGLNQLYNLVAQDYALTDTIECLSRMLHRGT-IPLDTFVKQGRELARQ 158 (174)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS-SCHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHH
Confidence 4445567777777777777777777777777664 3455555555555443
No 395
>4fn6_A Thiaminase-2, thiaminase II; alpha-helix, vitamin B1, BI-functional enzyme, C of thiamine INTO HMP and THZ; HET: CME; 2.69A {Staphylococcus aureus}
Probab=20.76 E-value=2.9e+02 Score=21.26 Aligned_cols=90 Identities=7% Similarity=0.011 Sum_probs=40.4
Q ss_pred CccCHhhHHHHHHHHHcc-CcHHHHHH-----------HHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHh
Q 046547 167 YHPDCGTCNYLVSSLCAI-DQLVEAAK-----------VLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVL 234 (343)
Q Consensus 167 ~~~~~~~~~~ll~~~~~~-~~~~~a~~-----------~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~ 234 (343)
..|....|...+...+.. |++.++.. +...+.+.+..++...|..-|..|. ..+..+.+.+..+..
T Consensus 106 ~~p~~~aY~~~l~~~a~~~~~~~~~~aAl~pC~~~Y~~ig~~l~~~~~~~~~~~y~~WI~~y~--~~f~~~v~~~~~~ld 183 (229)
T 4fn6_A 106 WPPSGDHYIKHMYFQAHSRENAIYTIAAMAPCPYIYAELAKRSQSDHKLNREKDTAKWFDFYS--TEMDDIINVFESLMN 183 (229)
T ss_dssp CCHHHHHHHHHHHHHHHHCCSHHHHHHHHTHHHHHHHHHHHHHHTCTTCCTTSTHHHHHHHHT--TTTHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCChHHHHHHHHh--HHHHHHHHHHHHHHH
Confidence 344455566666666665 66555432 1222232222112345666677666 444444433333332
Q ss_pred cCCCCCchhHHHHHHHHHHhCccH
Q 046547 235 NMGLMPRQGMVIKVAAALRANREM 258 (343)
Q Consensus 235 ~~~~~p~~~~~~~li~~~~~~~~~ 258 (343)
+.+...+......+...+.+.-++
T Consensus 184 ~~~~~~~~~~~~~~~~~F~~a~~l 207 (229)
T 4fn6_A 184 KLAESMSDKELEQVKQVFLESCIH 207 (229)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred HHHhhCCHHHHHHHHHHHHHHHHH
Confidence 212222333444555554444333
No 396
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=20.59 E-value=2.3e+02 Score=23.48 Aligned_cols=76 Identities=4% Similarity=-0.043 Sum_probs=53.7
Q ss_pred HHHHHhhhCCCCCCHhhHHHHHHHHhcCCChhHHHHHHHHHHhcCCCCCc-hhHH--HHHHHH----HHhCccHHHHHHH
Q 046547 192 KVLKGMSSAECVPDLESYSIVIGAMSTARKTNDAVEMMKEMVLNMGLMPR-QGMV--IKVAAA----LRANREMWKAVEM 264 (343)
Q Consensus 192 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~p~-~~~~--~~li~~----~~~~~~~~~a~~~ 264 (343)
+++..+.+.|+.|...++.-++..+++.=.++.+.++|+.+... |.... ...| -+++.. .....+++++..+
T Consensus 230 ~L~~hL~~~~i~~~~f~~~W~~~lF~~~~p~~~~lrlWD~~l~~-g~~~~~~~~~v~~AiL~~~~~~ll~~~d~~~il~~ 308 (345)
T 2qfz_A 230 QVHRHLDQHEVRYLQFAFRWMNNLLMREVPLRCTIRLWDTYQSE-PDGFSHFHLYVCAAFLVRWRKEILEEKDFQELLLF 308 (345)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTTTTSCHHHHHHHHHHHTTS-TTTTTTHHHHHHHHHHHHTHHHHHHCCCHHHHHHH
T ss_pred HHHHHHHHcCCchhhHHHHHHHHHHcccCCHHHHHHHHHHHHhC-CCChhHHHHHHHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 45667777888888888888988888888899999999999874 54432 2222 233332 2346788888887
Q ss_pred HHHH
Q 046547 265 IEFL 268 (343)
Q Consensus 265 ~~~m 268 (343)
+..+
T Consensus 309 L~~~ 312 (345)
T 2qfz_A 309 LQNL 312 (345)
T ss_dssp HTSC
T ss_pred HHcC
Confidence 7764
No 397
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=20.53 E-value=3.6e+02 Score=22.14 Aligned_cols=96 Identities=5% Similarity=-0.005 Sum_probs=61.7
Q ss_pred HHHHHHHhcCCCCCchhHHHHHHHHHHhCccHHHHHHHHHHHHHcCCCCchhhHHHHHHH----HHhcccHhHHHHHHHH
Q 046547 227 EMMKEMVLNMGLMPRQGMVIKVAAALRANREMWKAVEMIEFLERKGCPIGFQGYEVVVEG----CLECREYILAGKTVMG 302 (343)
Q Consensus 227 ~~~~~m~~~~~~~p~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~li~~----~~~~g~~~~a~~~~~~ 302 (343)
+++..+.+ .|+.|...++..++..+++.=.++.+.++|+.+...|...-....-+++.. ..+..+.++...+++.
T Consensus 209 ~L~~hL~~-~~i~~~~~~~~W~l~lF~~~lp~~~~lrlwD~~l~~g~~~l~~valaiL~~~~~~ll~~~~~~~il~~l~~ 287 (331)
T 3qye_A 209 DLYNHLEE-HEIGPSLYAAPWFLTMFASQFPLGFVARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKS 287 (331)
T ss_dssp HHHHHHHH-TTCCGGGTSHHHHHSTTTTTSCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTHHHHHTCCSHHHHHHHHHH
T ss_pred HHHHHHHH-cCCChHHHHHHHHHHHhhhhCCHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence 56666776 599999999999999999988899999999999887754211122222322 2234467777777765
Q ss_pred HhHCCCCCCHHHHHHHHHHHhccC
Q 046547 303 MTERGFIPYIKVRQKVVEGLAGVG 326 (343)
Q Consensus 303 m~~~g~~p~~~~~~~li~~~~~~g 326 (343)
.... .+......++.-.....
T Consensus 288 ~~p~---~~~~di~~li~~A~~l~ 308 (331)
T 3qye_A 288 TLPN---LGLVQMEKTINQVFEMD 308 (331)
T ss_dssp TTTC---CCHHHHHHHHHHHHHCC
T ss_pred hCCC---CCHHHHHHHHHHHHhCC
Confidence 3221 23344555555444443
No 398
>3rjo_A Endoplasmic reticulum aminopeptidase 1; ERAP1, hydrolase; 2.30A {Homo sapiens}
Probab=20.01 E-value=4.1e+02 Score=22.69 Aligned_cols=141 Identities=7% Similarity=-0.006 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCC---hHHHHHHHHHHHhcC----CCccHHHHHHHHHHHHhccCchhHHHHHHHHHHhcCCccCHhhHH
Q 046547 103 DYLLSYTLQSLHP---LPLALAILQRTLRSG----CVPVPQIRLLLSSAWLERRCQSQSVADILLEMKSIGYHPDCGTCN 175 (343)
Q Consensus 103 ~~li~~~~~~~~~---~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~~~~~~~a~~~~~~m~~~g~~~~~~~~~ 175 (343)
..++. ..|..|+ .+.|.+.|++..+.+ +.||.... + ||...+..++-..+++..... .+..--.
T Consensus 201 ~~~l~-~ac~~g~~~c~~~A~~~f~~~~~~~~~~~i~~dlr~~--V---y~~~~~~~~~~~~l~~~y~~s---~~~~ek~ 271 (419)
T 3rjo_A 201 SQLLL-LACVHNYQPCVQRAEGYFRKWKESNGNLSLPVDVTLA--V---FAVGAQSTEGWDFLYSKYQFS---LSSTEKS 271 (419)
T ss_dssp HHHHH-HHHHTTCHHHHHHHHHHHHHHHHTTTCSCCCGGGHHH--H---HHHHTTSHHHHHHHHHHHHHC---CCHHHHH
T ss_pred HHHHH-HHHhcCCHHHHHHHHHHHHHHhhCCCCCCCCCCccee--E---EeeeeCCHHHHHHHHHHHhcC---CCHHHHH
Confidence 34444 4555565 456667777765432 55554431 1 121112222333455555443 3445566
Q ss_pred HHHHHHHccCcHHHHHHHHHHhhhCCCCCCHhhHHHHHHHHhcCC-ChhHHHHHHH----HHHhcCCCCCchhHHHHHHH
Q 046547 176 YLVSSLCAIDQLVEAAKVLKGMSSAECVPDLESYSIVIGAMSTAR-KTNDAVEMMK----EMVLNMGLMPRQGMVIKVAA 250 (343)
Q Consensus 176 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~----~m~~~~~~~p~~~~~~~li~ 250 (343)
.++.+++...+.+...++++......+........ ++.+.+.+. -.+.|.+++. .+.++ +.+.......+|.
T Consensus 272 ~ll~aL~~s~d~~ll~~~L~~~l~~~~ir~qD~~~-~~~~v~~n~~g~~~aw~fl~~nw~~l~~~--~~~~~~~~~~~i~ 348 (419)
T 3rjo_A 272 QIEFALCRTQNKEKLQWLLDESFKGDKIKTQEFPQ-ILTLIGRNPVGYPLAWQFLRKNWNKLVQK--FELGSSSIAHMVM 348 (419)
T ss_dssp HHHHHHTTCSCHHHHHHHHHHHHHTSSSCGGGHHH-HHHHHHTSTTTHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHcCCCCCHHHHHHHHHHHhCCCCCchhHHHH-HHHHHhcCcchHHHHHHHHHHHHHHHHHH--hCcCchhHHHHHH
Confidence 78888888888888888887776654322233333 333443322 2233444433 33332 2233355666666
Q ss_pred HHHhC
Q 046547 251 ALRAN 255 (343)
Q Consensus 251 ~~~~~ 255 (343)
.....
T Consensus 349 ~~~~~ 353 (419)
T 3rjo_A 349 GTTNQ 353 (419)
T ss_dssp HTTTT
T ss_pred HHhhc
Confidence 55443
Done!